Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 346 of 402
Found at i:31782063 original size:27 final size:26
Alignment explanation
Indices: 31782009--31782063 Score: 67
Period size: 27 Copynumber: 2.1 Consensus size: 26
31781999 TGGGTTGGCT
*
31782009 AGGCATTGGAGTTCATTCCATGTCTA
1 AGGCATTGGAGTTCATTCCATGTATA
*
31782035 AGGCATATGTAGTTCATTCCCA-GTATA
1 AGGCAT-TGGAGTTCATT-CCATGTATA
31782062 AG
1 AG
31782064 ATCGGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
26 6 0.24
27 16 0.64
28 3 0.12
ACGTcount: A:0.27, C:0.18, G:0.22, T:0.33
Consensus pattern (26 bp):
AGGCATTGGAGTTCATTCCATGTATA
Found at i:31782399 original size:342 final size:340
Alignment explanation
Indices: 31781600--31782553 Score: 955
Period size: 342 Copynumber: 2.8 Consensus size: 340
31781590 GTGGGCTGGT
* * ** * *
31781600 TCCTCGGCTTACGTATTCTGCCTCTTCGATCGGCTGAGCGCCCGCACTTTCATTTCATTGGTTGG
1 TCCTCGGCTTACGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGG
* * *
31781665 CTTAGGCATACAGAGTTCATTCCATGTCTAAGCATATAGAGTTCATTCCCAGTCTAAGATCGGAT
66 CTTAGGCATACAGAGTTCATTCCATGTCTAAGCATAGA-AGTTCATTCCCAGTATAAGATCGGAC
* * * *
31781730 CGGACCGAGGGTTG-AGCAGCAGGATCGACAGCACGTAGGGGGGATCGAGCTGATCCCCGGCTTG
130 CGAACCGAGGGTTGCAGCAGCAGGATCGACAGCACGCA-GGGGGACCGGGCTGATCCCCGGCTTG
* * * * * * * * * *
31781794 CGCATTCTAGCTCTCC-AATGGCTGAAAGCCCGCATGCCCATTTCGT-GGTTGTCTTAGGCATAG
194 CGCATTTTGGCTCTCCGGATGGTTGAACGCCCGCACGCTCATTTTGTGGGTTGGCTTAGGCATAC
* * ** * ** ** *
31781857 GGAGTTCATT-CCATGTCTAAGCCCTAGCCGGACTGAGGGTTGTGGCAGTGGATCGACAGCACGC
259 GGAGTTCATTCCCATATCTAAGACCTAGCCGGACCAAGGATTACGGCAGAAGATCGACAACACGC
31781921 AGAGGGGGCCAGGCCAA
324 AGAGGGGGCCAGGCCAA
* * * * * *
31781938 TCCTCGACTTACGCATTATGCCTCTCCGACCAGCTCAGCGCCC-CACCAGTCGTTCGTTTTATGG
1 TCCTCGGCTTACGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCA-C-G-C--TCGTTTCATGG
** *
31782002 GTTGGC-TAGGCAT-TGGAGTTCATTCCATGTCTAAGGCATATGTAGTTCATTCCCAGTATAAGA
61 GTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA-GCATA-GAAGTTCATTCCCAGTATAAGA
* * * * *
31782065 TCGGACCGAACCGAGGGTTGCAGTAGTAGTA-GGACCAGC-TGCAGGGGGACCGGGCTGATCCCC
124 TCGGACCGAACCGAGGGTTGCAGCAGCAGGATCGA-CAGCACGCAGGGGGACCGGGCTGATCCCC
* * * *
31782128 GGCTTGCGTATTTTGGCTCTCCGGTTGGTTGAACGCCTGCACGCTCATTTTGTGGGTTGGCTTGG
188 GGCTTGCGCATTTTGGCTCTCCGGATGGTTGAACGCCCGCACGCTCATTTTGTGGGTTGGCTTAG
* * *
31782193 GCATACAGAGTTCATTCCCA-ATCTAAGATC-AGACCGGACCAAGGATTACGGTAGCAAGATCGA
253 GCATACGGAGTTCATTCCCATATCTAAGACCTAG-CCGGACCAAGGATTACGGCAG-AAGATCGA
* *
31782256 CAACACGC-GGGGGAAGGACC-GGACCGA
316 CAACACGCAGAGGG--GG-CCAGG-CCAA
* *
31782283 TCC-CTGGCTTACGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCGTTTCACGGGTTG
1 TCCTC-GGCTTACGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTG
* *
31782347 GCTTAGGCATACAGAGATCATTCCATGTCTAAGCATACGAAGTTCATTCCCAGTGTAAGATCGGA
65 GCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATA-GAAGTTCATTCCCAGTATAAGATCGGA
* * * *
31782412 CCGAACCGAAGGTTGCAACAACAGGATCGACAGCACGCAGGGGCGACCGGGCCGATCCCCGGCTT
129 CCGAACCGAGGGTTGCAGCAGCAGGATCGACAGCACGCAGGGG-GACCGGGCTGATCCCCGGCTT
* * * * ** * * * * * *
31782477 ACACATTTTGCCTCTTCGGCCGGTTGAGCACCCGTACGCTCGTTTTATGGGTTGGCTTAGCCATA
193 GCGCATTTTGGCTCTCCGGATGGTTGAACGCCCGCACGCTCATTTTGTGGGTTGGCTTAGGCATA
31782542 CGGAGTTCATTC
258 CGGAGTTCATTC
31782554 TATGTCTAAG
Statistics
Matches: 496, Mismatches: 95, Indels: 44
0.78 0.15 0.07
Matches are distributed among these distances:
337 2 0.00
338 37 0.07
340 56 0.11
341 92 0.19
342 135 0.27
343 44 0.09
344 87 0.18
345 41 0.08
346 2 0.00
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (340 bp):
TCCTCGGCTTACGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGG
CTTAGGCATACAGAGTTCATTCCATGTCTAAGCATAGAAGTTCATTCCCAGTATAAGATCGGACC
GAACCGAGGGTTGCAGCAGCAGGATCGACAGCACGCAGGGGGACCGGGCTGATCCCCGGCTTGCG
CATTTTGGCTCTCCGGATGGTTGAACGCCCGCACGCTCATTTTGTGGGTTGGCTTAGGCATACGG
AGTTCATTCCCATATCTAAGACCTAGCCGGACCAAGGATTACGGCAGAAGATCGACAACACGCAG
AGGGGGCCAGGCCAA
Found at i:31782738 original size:355 final size:355
Alignment explanation
Indices: 31782301--31782944 Score: 847
Period size: 355 Copynumber: 1.8 Consensus size: 355
31782291 TTACGCATTC
* * * * * *
31782301 TGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCGTTTCACGGGTTGGCTTAGGCATACAGAGATC
1 TGCCTCTCCGGCCGACTGAGCACCCGCACGCTCATTCCACGGGTTGACTTAGGCATACAGAGATC
* * * *
31782366 ATTCCATGTCTAAGCATACGAAGTTCATTCCCAGTGTAAGATCGGACCGAACCGAAGGTTGCAAC
66 ATCCCAGGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAAGGTTGCAAC
* * * * *
31782431 AACAGGATCGACAGCACGCAGGGGCGACCGGGCCGATCCCCGGCTTACACATTTTGCCTCTTCGG
131 AACAGGATCGACAGCACGCAGGGGCGACCAGGCCGACCCCCGACTTACACATTCTGCCTCTCCGG
* ** * * *
31782496 CCGGTTGAGCACCCGTACGCTCGTTTTATGGGTTGGCTTAGCCATACGGAGTTCATTCTATGTCT
196 CCGATTGAGCACCCACACGCCCGTTTCATGGGTTGGCTTAGCCATACGGAGTTCATTCCATGTCT
**
31782561 AAGCCCCAGCTGGACCGAGGGTTGTGGCAGTAGGATCAGTAGTGGGATCAGCAGCATGCAGAAGG
261 AAGCCCCAGCCAGACCGAGGGTTGTGGCAGTAGGATCAGTAGTGGGATCAGCAGCATGCAGAAGG
31782626 GGATCGGGCTGATCCCCGGCTTGCGTACTA
326 GGATCGGGCTGATCCCCGGCTTGCGTACTA
* ** * * *
31782656 TGCCTCTCTGGCCGACTGAGCACCCGCACGCTCATTCCGTGGGTTGACTTAGGCATACGGAGTTG
1 TGCCTCTCCGGCCGACTGAGCACCCGCACGCTCATTCCACGGGTTGACTTAGGCATACAGAGATC
* * * * * * *
31782721 ATCCCCGGTCTAAGCATACGGAGTTCATTTCCAGTCTAAGATCAGACCGGATCGATGGTTGCGAC
66 ATCCCAGGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAAGGTTGCAAC
** * * * *
31782786 AGTAGGATCGACAGCACGCAGGGGGGATCAGGCCGACCCCCGACTTGCGCATTCTGCCTCTCCGG
131 AACAGGATCGACAGCACGCAGGGGCGACCAGGCCGACCCCCGACTTACACATTCTGCCTCTCCGG
* * * * * *
31782851 CCGATTGAGCGCCCACATGCCCGTTTCGTGGGTTGGTTTAGGCATAGGGAGTTCATTCCATGTCT
196 CCGATTGAGCACCCACACGCCCGTTTCATGGGTTGGCTTAGCCATACGGAGTTCATTCCATGTCT
*
31782916 AAGCCCCAGCCAGATCGAGGGTTGTGGCA
261 AAGCCCCAGCCAGACCGAGGGTTGTGGCA
31782945 ACGGGACCTG
Statistics
Matches: 240, Mismatches: 49, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
355 240 1.00
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.23
Consensus pattern (355 bp):
TGCCTCTCCGGCCGACTGAGCACCCGCACGCTCATTCCACGGGTTGACTTAGGCATACAGAGATC
ATCCCAGGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAAGGTTGCAAC
AACAGGATCGACAGCACGCAGGGGCGACCAGGCCGACCCCCGACTTACACATTCTGCCTCTCCGG
CCGATTGAGCACCCACACGCCCGTTTCATGGGTTGGCTTAGCCATACGGAGTTCATTCCATGTCT
AAGCCCCAGCCAGACCGAGGGTTGTGGCAGTAGGATCAGTAGTGGGATCAGCAGCATGCAGAAGG
GGATCGGGCTGATCCCCGGCTTGCGTACTA
Found at i:31782757 original size:26 final size:26
Alignment explanation
Indices: 31782708--31782760 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
31782698 GTTGACTTAG
* *
31782708 GCATACGGAGTTGATCCCCGGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
**
31782734 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
31782760 G
1 G
31782761 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:31783293 original size:159 final size:159
Alignment explanation
Indices: 31782794--31783378 Score: 473
Period size: 159 Copynumber: 3.7 Consensus size: 159
31782784 ACAGTAGGAT
* * * *
31782794 CGACAGCACGCAG-GGGGGA-TCAGGCCGACCCCCGACTTGCGCATTCTGCCTCTCCGGCC-GAT
1 CGACAGCACGCAGAGGGGGACTCAGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGACCAG-C
* * * **
31782856 TGAGCGCCCACATGCCCGTTTCGTGGGTTGGTTTAGGCATAGGGAGTTCATTCCATGTCTAAGCC
65 TCAGCACCCACACGCCCGTTTCGTGGGTTGACTTAGGCATAGGGAGTTCATTCCATGTCTAAGCC
* *
31782921 CCAGCCAGA-TCGAGGGTTGTGGCAACGGGAC
130 CCAG-CAGACT-GAGGGTTGTGGCAGCGGGTC
* * * * *
31782952 CTG-CAGCACGTAGAGGGGGAC-CAGGTCGATCCCCGACTTACGCATTATGCCTCTTCGACTAGC
1 C-GACAGCACGCAGAGGGGGACTCAGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGACCAGC
* *** * ** * * ** * *
31783015 TCCGTGTCCGCACGTTCGTTTCATGGTTTGACTTTTGCATACGGAGTTC-TTTCATGTCT-A---
65 TCAGCACCCACACGCCCGTTTCGTGGGTTGACTTAGGCATAGGGAGTTCATTCCATGTCTAAGCC
* * ** * *
31783075 --AGCATACCGAGGGTTACGGCAGTAGGAT-
130 CCAGCAGACTGAGGGTTGTGGCAG-CGGGTC
** * * * * ** * * *
31783103 CGGTAGCACGCAGCGAGGGAC-CGGGCTGATCCTTGGCTTGCGCATTCTACCTCTCCGACCAGCT
1 CGACAGCACGCAGAGGGGGACTCAGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGACCAGCT
* *
31783167 AAGCACCCACACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCC
66 CAGCACCCACACGCCCGTTTCGTGGGTTGACTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCC
31783232 CAGCAGGACTGAGGGTTGTGGCAGCGGGTC
131 CAGCA-GACTGAGGGTTGTGGCAGCGGGTC
* * ***
31783262 CGACAGCACGCAGAGGGGGACTGA-GCCGATCCCCGGCTTGCGCATTATGCCTCTCCGATTGGCT
1 CGACAGCACGCAGAGGGGGACTCAGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGACCAGCT
* * * * * *
31783326 CATCACCCAAACGCTCATTTCGTGGGATGACTTAGGCATATGGAGTTCATTCC
66 CAGCACCCACACGCCCGTTTCGTGGGTTGACTTAGGCATAGGGAGTTCATTCC
31783379 CAATCTAAGA
Statistics
Matches: 319, Mismatches: 91, Indels: 33
0.72 0.21 0.07
Matches are distributed among these distances:
150 1 0.00
151 95 0.30
152 13 0.04
153 1 0.00
157 1 0.00
158 26 0.08
159 181 0.57
160 1 0.00
ACGTcount: A:0.19, C:0.29, G:0.29, T:0.23
Consensus pattern (159 bp):
CGACAGCACGCAGAGGGGGACTCAGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGACCAGCT
CAGCACCCACACGCCCGTTTCGTGGGTTGACTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCC
CAGCAGACTGAGGGTTGTGGCAGCGGGTC
Found at i:31784042 original size:159 final size:160
Alignment explanation
Indices: 31783809--31784256 Score: 434
Period size: 159 Copynumber: 2.8 Consensus size: 160
31783799 TTGCGACAGT
* * * * *
31783809 AGGATCGACAGCACGCAG-GGGGGATCGAGAC-GATCCCCGACTTGCGCATTCTGCCTCTCCGAT
1 AGGACCGATAGCACGCAGAGGGGGATCG-GGCTGATCCCCGGCTTGTGCATTCTGCCTCTCCGAT
* * * * *
31783872 CGGCTGAGCGCCCGCACTCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTCCATTCCATGTCTA
65 CGGCTTAGCGCCCGTACTCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
* *
31783937 AGCCCCAG-CCAGATCGAGGGTTGGGGTAGC
130 AGCCCCAGACCAGATCGAAGGTTGCGGTAGC
* * * *
31783967 -GGCCCCGATAGTACGCAGAGGGGGATCGGGCTGATCCCCGGCTTGTGCATTATGCCTCTCCG-G
1 AGG-ACCGATAGCACGCAGAGGGGGATCGGGCTGATCCCCGGCTTGTGCATTCTGCCTCTCCGAT
* * * * *
31784030 CTGGCTTAGCGCCTGTA-TGCTCATTTCGTGGGATGACTTAGGCATACGGAGTTCATTCCCA-AT
65 C-GGCTTAGCGCCCGTACT-CTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGT
**** *
31784093 CTAAG-GTTGGACCGGATCGAAGGTTGCGGTAGC
127 CTAAGCCCCAGACCAGATCGAAGGTTGCGGTAGC
* * * * *
31784126 AGGATCGATAGCACGTA-AGGGGGAATCGGG-TCGATTCTCGGCTTGTGCATTCTACCTCTCCGA
1 AGGACCGATAGCACGCAGAGGGGG-ATCGGGCT-GATCCCCGGCTTGTGCATTCTGCCTCTCCGA
* * *
31784189 TCGG-TTGAACGCCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
64 TCGGCTT-AGCGCCCGTACTCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
31784253 -AAGC
128 TAAGC
31784257 ATACAGAGTT
Statistics
Matches: 232, Mismatches: 43, Indels: 29
0.76 0.14 0.10
Matches are distributed among these distances:
157 2 0.01
158 31 0.13
159 193 0.83
160 6 0.03
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.24
Consensus pattern (160 bp):
AGGACCGATAGCACGCAGAGGGGGATCGGGCTGATCCCCGGCTTGTGCATTCTGCCTCTCCGATC
GGCTTAGCGCCCGTACTCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
GCCCCAGACCAGATCGAAGGTTGCGGTAGC
Found at i:31784417 original size:194 final size:196
Alignment explanation
Indices: 31784123--31784478 Score: 513
Period size: 194 Copynumber: 1.8 Consensus size: 196
31784113 AGGTTGCGGT
* * * * *
31784123 AGCAGGATCGATAGCACGTAAGGGGGAATCGGGTCGATTCTCGGCTTGTGCATTCTACCTCTCCG
1 AGCAGGATCGATAGCACG-AAGGGGGAACCGGGCCGATCCTCAGCTTGCGCATTCTACCTCTCCG
* * *
31784188 ATCGGTTGAACGCCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
65 ATCGGCTGAACGCCCGCACGCTCGTTTCATGGGTTGGCTTAGACATACGGAGTTCATTCCATGTC
31784253 -AAGCATACAG-AGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGTGTTACGGTAGCAGGACT
130 TAAGCATAC-GTAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGTGTTACGGTAGCAGGACT
31784316 AGC
194 AGC
* * *
31784319 AGCAGGATCGATAGCAC-ACATGGGG-ACCGGGCCGATCCTCAGCTTGCGCATTTTGCCTCTCCG
1 AGCAGGATCGATAGCACGA-AGGGGGAACCGGGCCGATCCTCAGCTTGCGCATTCTACCTCTCCG
* * **
31784382 ATCGGCTGAGCGCCTGCACGCTCGTTTTGTGGGTTGGCTTAGACATACGGAGTTCATTCCATGTC
65 ATCGGCTGAACGCCCGCACGCTCGTTTCATGGGTTGGCTTAGACATACGGAGTTCATTCCATGTC
*
31784447 TAAGCATACGTAGTTCATTCCTAGTCTAAGAT
130 TAAGCATACGTAGTTCATTCCCAGTCTAAGAT
31784479 TTTGCACCAG
Statistics
Matches: 141, Mismatches: 16, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
194 91 0.65
195 33 0.23
196 17 0.12
ACGTcount: A:0.22, C:0.25, G:0.27, T:0.26
Consensus pattern (196 bp):
AGCAGGATCGATAGCACGAAGGGGGAACCGGGCCGATCCTCAGCTTGCGCATTCTACCTCTCCGA
TCGGCTGAACGCCCGCACGCTCGTTTCATGGGTTGGCTTAGACATACGGAGTTCATTCCATGTCT
AAGCATACGTAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGTGTTACGGTAGCAGGACTAG
C
Found at i:31784461 original size:26 final size:26
Alignment explanation
Indices: 31784425--31784476 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
31784415 TTGGCTTAGA
31784425 CATACGGAGTTCATTCC-ATGTCTAAG
1 CATACGGAGTTCATTCCTA-GTCTAAG
*
31784451 CATACGTAGTTCATTCCTAGTCTAAG
1 CATACGGAGTTCATTCCTAGTCTAAG
31784477 ATTTTGCACC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.33
Consensus pattern (26 bp):
CATACGGAGTTCATTCCTAGTCTAAG
Found at i:31785167 original size:25 final size:26
Alignment explanation
Indices: 31785138--31785187 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
31785128 GTTAACTTAG
*
31785138 GCATAC-GAGTTCATCCCCAGTCTAC
1 GCATACGGAGTTCATCCCCAATCTAC
*
31785163 GCATACGGAGTTCATTCCCAATCTA
1 GCATACGGAGTTCATCCCCAATCTA
31785188 AGATCAAATC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 6 0.27
26 16 0.73
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAC
Found at i:31785677 original size:26 final size:25
Alignment explanation
Indices: 31785641--31785692 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 25
31785631 GTTGGCTTAG
31785641 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCA-GTCTAA
31785667 GCATACGGAGTTCATTCCAGTCTAA
1 GCATACGGAGTTCATTCCAGTCTAA
31785692 G
1 G
31785693 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 7 0.27
26 19 0.73
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCAGTCTAA
Found at i:31786405 original size:159 final size:159
Alignment explanation
Indices: 31786021--31786419 Score: 400
Period size: 159 Copynumber: 2.5 Consensus size: 159
31786011 AGTGCCTTCA
* *
31786021 TGGGTTGG-TTAGGCATAAGGGAGTTCATTCCATGTCTACA-CCCCAACTGGACCGAGGGTTGTG
1 TGGGTTGGCTTAGGCAT-ACGGAGTTCATTCCATGTCTA-AGCCCCAACCGGACCGAGGGTTGTG
* * * *
31786084 GCAGCGGGATCGACATCATGCAGAGGGGGACCGGGCTGATCCCCGACTTGCGCATTATGCCTCTC
64 GTAGCAGGATCGACAGCATGCAGAGGGGGACCGGGCTGATCCCCGACTTACGCATTATGCCTCTC
*
31786149 CAACTGGCTTAGCACCTGAACGCTCGTTTCG
129 CAACTGGCTTAGCACCCGAACGCTCGTTTCG
* * * * ** * * *
31786180 TGGGTTGACTTAGGCAAACAGAGTTCATTCCCA-ATCTAAG-ATCAGACCAGACCGAGAGTTGCG
1 TGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCA-ACCGGACCGAGGGTTGTG
* * * ** * * * *
31786243 GTAGCAGGATCGATAGCATGCAG-GAGGGGACCGAG-TCGGTCCTTGGCTTACGTATTCTTCCTC
64 GTAGCAGGATCGACAGCATGCAGAG-GGGGACCGGGCT-GATCCCCGACTTACGCATTATGCCTC
* * *
31786306 TCCGA-TCGG-TTGAGCACCCGCATGCTCGTTTCG
127 TCCAACT-GGCTT-AGCACCCGAACGCTCGTTTCG
*
31786339 TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCAAGGGTTGTGGT
1 TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTGTGGT
*
31786404 AGCAGGACCGACAGCA
66 AGCAGGATCGACAGCA
31786420 GGATCGGTAA
Statistics
Matches: 190, Mismatches: 40, Indels: 20
0.76 0.16 0.08
Matches are distributed among these distances:
158 11 0.06
159 167 0.88
160 12 0.06
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.23
Consensus pattern (159 bp):
TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTGTGGT
AGCAGGATCGACAGCATGCAGAGGGGGACCGGGCTGATCCCCGACTTACGCATTATGCCTCTCCA
ACTGGCTTAGCACCCGAACGCTCGTTTCG
Found at i:31786565 original size:27 final size:27
Alignment explanation
Indices: 31786535--31786586 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
31786525 GTTGACTTAG
*
31786535 GCATACGGAGTTCATCCCCAGTCTATA
1 GCATACGAAGTTCATCCCCAGTCTATA
*
31786562 GCATACGAAGTTCATTCCCAGTCTA
1 GCATACGAAGTTCATCCCCAGTCTA
31786587 AGATCGGACC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.27, C:0.29, G:0.17, T:0.27
Consensus pattern (27 bp):
GCATACGAAGTTCATCCCCAGTCTATA
Found at i:31787842 original size:26 final size:26
Alignment explanation
Indices: 31787794--31787843 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
31787784 NNNGTTGACT
* *
31787794 TAAGCATACGGAGTTCGTCCCCAGTC
1 TAAGCATACGAAGTTCATCCCCAGTC
*
31787820 TAAGCATACGAAGTTCATTCCCAG
1 TAAGCATACGAAGTTCATCCCCAG
31787844 AGTAAGATCA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (26 bp):
TAAGCATACGAAGTTCATCCCCAGTC
Found at i:31787849 original size:26 final size:26
Alignment explanation
Indices: 31787794--31787849 Score: 67
Period size: 26 Copynumber: 2.2 Consensus size: 26
31787784 NNNGTTGACT
* * *
31787794 TAAGCATACGGAGTTCGTCCCCAGTC
1 TAAGCATACGAAGTTCATCCCCAGAC
* *
31787820 TAAGCATACGAAGTTCATTCCCAGAG
1 TAAGCATACGAAGTTCATCCCCAGAC
31787846 TAAG
1 TAAG
31787850 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.23
Consensus pattern (26 bp):
TAAGCATACGAAGTTCATCCCCAGAC
Found at i:31788156 original size:159 final size:158
Alignment explanation
Indices: 31787823--31788324 Score: 516
Period size: 158 Copynumber: 3.2 Consensus size: 158
31787813 CCCAGTCTAA
* ** * *
31787823 GCATACGAAGTTCATTCCCA-GAGTAAGATCAGACTGGACCGAGGGTTGCGGTAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAAACTGGACCGAGGGTTGCGGCAGCAGGATCGAC
* * * * * *
31787887 AGCACGCAGAGGGGACTGGGTCGAT-CCCGAGCTTGCGCATTCTGCCTCTCCTGCCGGCTGAGCA
65 AGCACGCAGAGGGGACCGAGCCGATCCCCG-GCTTGCGCATTATGCCTCTCCCGTCGGCTGAGCA
* * **
31787951 CCTGGACGCCCGTTTCGTGGGTT-AGCTTAG
129 CCCGCACGCTTGTTTCGTGGGTTGA-CTTAG
* * * * *
31787981 GCATA-GGAAGTACATTCCATGTCTAAG-TCCCAGCTGGACCGAGGGTTGTGGCAGCAGGACCGA
1 GCATACGG-AGTTCATTCCATGTCTAAGAT-CAAACTGGACCGAGGGTTGCGGCAGCAGGATCGA
* * *
31788044 CAGCGA-GCAGAGGGGGACCGAGCCGATCCCCGGCTTGCCCATTATGCCTCTCCCGTTGGCTCAG
64 CAGC-ACGCAGA-GGGGACCGAGCCGATCCCCGGCTTGCGCATTATGCCTCTCCCGTCGGCTGAG
* *
31788108 CGCCCACACGCTTGTTTCGTGGGTTGACTTAG
127 CACCCGCACGCTTGTTTCGTGGGTTGACTTAG
* ** *
31788140 GCGTACGGAGTTCATTCCCA-GTCTAAGATCAAACCAGACCAAGGGTTGCGGCAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAAACTGGACCGAGGGTTGCGGCAGCAGGATCGAC
*** * * * * *
31788204 AGCACGCTCTGGGGACC-AGGCCCATCCCCAGCTTGCGCATTTTGCCTCTCCGGTCGGTTGAGCA
65 AGCACGCAGAGGGGACCGA-GCCGATCCCCGGCTTGCGCATTATGCCTCTCCCGTCGGCTGAGCA
*
31788268 CCCGCACGCTTGTTTCGTGGGTTGGCTTAG
129 CCCGCACGCTTGTTTCGTGGGTTGACTTAG
*
31788298 GCATACGGAGTTCATTCCTTGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
31788325 CATATGGAGT
Statistics
Matches: 281, Mismatches: 50, Indels: 26
0.79 0.14 0.07
Matches are distributed among these distances:
157 8 0.03
158 148 0.53
159 114 0.41
160 11 0.04
ACGTcount: A:0.19, C:0.29, G:0.30, T:0.22
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAAACTGGACCGAGGGTTGCGGCAGCAGGATCGACA
GCACGCAGAGGGGACCGAGCCGATCCCCGGCTTGCGCATTATGCCTCTCCCGTCGGCTGAGCACC
CGCACGCTTGTTTCGTGGGTTGACTTAG
Found at i:31788334 original size:26 final size:26
Alignment explanation
Indices: 31788298--31788350 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
31788288 GTTGGCTTAG
**
31788298 GCATACGGAGTTCATTCCTTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
31788324 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
31788350 G
1 G
31788351 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:31789048 original size:26 final size:26
Alignment explanation
Indices: 31789011--31789063 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
31789001 GTTGACTTAG
*
31789011 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
31789037 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
31789063 G
1 G
31789064 ATCAAACTTG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:31789397 original size:159 final size:157
Alignment explanation
Indices: 31789037--31789537 Score: 498
Period size: 158 Copynumber: 3.2 Consensus size: 157
31789027 CCCAGTCTAA
* * * * *
31789037 GCATACGAAGTTCATTCCCA-GTCTAAGATCAAACTTGACCGAGGGTTGCGATAGCAGGATCGGC
1 GCATACGGAGTTCATT-CCATGTCTAAGAT-AGACTAGATCGAGGGTTGCGGTAGCAGGATCGGC
* * * *
31789101 AGCACGCAGGGGGGACCGGATCGATCCCCGGCTTGCGCATTCTGCCTCTCCAGTCGGCTGAGCAC
64 AGCACGCAGGGGGGACCGGGTCGAT-CCCGACTTGCGCATTCTACCTCTCCGGTCGGCTGAGCAC
*
31789166 CCGCA-GC-CTGTTTCATGGGTTGGCTTAG
128 CCGCACGCTCGGTTTCATGGGTTGGCTTAG
* ** * * * *
31789194 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCAGATTGAGGGTTGTGGTAGCGGGA-CTGG
1 GCATACGGAGTTCATTCCATGTCTAAG--ATAGACTAGATCGAGGGTTGCGGTAGCAGGATC-GG
* * *
31789257 CAGCACGCAGAGGAGGG-CCGGGTCGGTCCCTGACTTGCGCATTATACCTCTCCGGTCGGCTCAG
63 CAGCACGCAG-GG-GGGACCGGGTCGATCCC-GACTTGCGCATTCTACCTCTCCGGTCGGCTGAG
* *
31789321 CACCCGCACGCTC-GTTTCGTGGGTTGACTTAG
125 CACCCGCACGCTCGGTTTCATGGGTTGGCTTAG
* * * * *
31789353 GCATACAGAGTTCATTCCCA-GTCTAAGATAGGACTGGATCGAGGGCTGCAGTAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATA-GACTAGATCGAGGGTTGCGGTAGCAGGATCGGC
* * * * * * ** *
31789417 AGCATGCAGGGGGGACTGAGCCGATCCCCAGCTTACGCATTCTACCTCTCCGACCGGCTGAGCGC
64 AGCACGCAGGGGGGACCGGGTCGATCCCGA-CTTGCGCATTCTACCTCTCCGGTCGGCTGAGCAC
*
31789482 CCACACGCTCGGTTT-ATGGGTTGGCTTAG
128 CCGCACGCTCGGTTTCATGGGTTGGCTTAG
31789511 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
31789538 CATACAGAGT
Statistics
Matches: 278, Mismatches: 49, Indels: 33
0.77 0.14 0.09
Matches are distributed among these distances:
156 4 0.01
157 63 0.23
158 130 0.47
159 76 0.27
160 5 0.02
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATAGACTAGATCGAGGGTTGCGGTAGCAGGATCGGCAG
CACGCAGGGGGGACCGGGTCGATCCCGACTTGCGCATTCTACCTCTCCGGTCGGCTGAGCACCCG
CACGCTCGGTTTCATGGGTTGGCTTAG
Found at i:31789547 original size:26 final size:26
Alignment explanation
Indices: 31789511--31789563 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31789501 GTTGGCTTAG
*
31789511 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
31789537 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
31789563 G
1 G
31789564 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:31790263 original size:26 final size:26
Alignment explanation
Indices: 31790234--31790286 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
31790224 GTTGGCTTAG
* *
31790234 GCATATGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCACGTCTAA
*
31790260 GCATACGGAGTTCATTCCCCGTCTAA
1 GCATACGGAGTTCATTCCACGTCTAA
31790286 G
1 G
31790287 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCACGTCTAA
Found at i:31791526 original size:26 final size:26
Alignment explanation
Indices: 31791497--31791549 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
31791487 GTTGGCTTAG
31791497 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
31791523 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
31791549 G
1 G
31791550 ATCGAACTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:31791604 original size:21 final size:21
Alignment explanation
Indices: 31791556--31791597 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
31791546 TAAGATCGAA
31791556 CTGGACCGAGGGTTGCGGTAG
1 CTGGACCGAGGGTTGCGGTAG
31791577 CTGGACCGAGGGTTGCGGTAG
1 CTGGACCGAGGGTTGCGGTAG
31791598 TAGGACCATG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.14, C:0.19, G:0.48, T:0.19
Consensus pattern (21 bp):
CTGGACCGAGGGTTGCGGTAG
Found at i:31791931 original size:26 final size:26
Alignment explanation
Indices: 31791895--31791947 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
31791885 GTTGACTTAG
31791895 GCATACGAAGTTCATCCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* * *
31791921 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
31791947 G
1 G
31791948 ATCGGTCCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:31791975 original size:398 final size:387
Alignment explanation
Indices: 31791262--31791975 Score: 876
Period size: 388 Copynumber: 1.8 Consensus size: 387
31791252 CCAATCCCTG
* **
31791262 GCTTGCGCATTCTACCTCTCCGGCCGGCTGAGCACCCGCACGCTCATTTCGTGGGTTGGCTTAGG
1 GCTTGCGCATTCTACCTCTCCGACCGGCTGAGCACCCGCACGCTCATTTCAAGGGTTGGCTTAGG
** * *
31791327 CATACGAAGTTCATTCCATGTCTAAGCCCCATTCGGACCGAGGGTTGTGGCTGCAAGACCGACAG
66 CATACGAAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAAGGTTATGGC-GCAAGACCGACAG
* * * **
31791392 CGAGATCAGTAGCATGCAGAGGGGGATCGGGCTGATCCCTGGTTTACACATTATGCCTCTCCGGT
130 CGAGATCAGTAGCACGCAGAGGGGGACCGGGCTGATCCCCGACTTACACATTATGCCTCTCCGGT
** * * * *
31791457 CGACTGAGCACCCGTACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
195 CGACTGAGCACCCCCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCATATCTA
* * *
31791522 AGCATACGGAGTTCATTCCCAGTCTAAGATCGAACTGGACCGAGGGTTGCGGTAGCTGGACCGAG
260 AGCATACGAAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTCCGGTAGCTGGACCGAG
31791587 GGTTGCGGTAGTAGGACCATGAGCAGGATCAGCAGCATGCAGGGGGGACCTGGTCGATCCTAA
325 GGTTGCGGTAGTAGGACCATGAGCAGGATCAGCAGCATGCAGGGGGGACCTGGTCGATCCTAA
* * * ** * *
31791650 GCTTGCGCATTTTGCCTCTCCGACCGGCTGCGTGCCCGTACGCTCGTTTCAAGGGTTGGCTTAGG
1 GCTTGCGCATTCTACCTCTCCGACCGGCTGAGCACCCGCACGCTCATTTCAAGGGTTGGCTTAGG
* * * ** *
31791715 CATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAAGGTTAT-G-GCAGGATCGGTAGT
66 CATACGAAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAAGGTTATGGCGCAAGACCGACAGC
* * * *
31791778 GGGATCGGTAGCACGCAGAGGGGGACCGGGTTGATCCCCGACTTACGCATTATGCCTCTCCGACC
131 GAGATCAGTAGCACGCAGAGGGGGACCGGGCTGATCCCCGACTTACACATTATGCCTCTCCG---
* *
31791843 GACCTCTCCGGCCGGTTGAGCACCCCCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTC
193 G-----T-C-GAC---TGAGCACCCCCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTC
* ** *
31791908 ATCCCCA-ATCTAAGCATATGAAGTTCATTCCCAGTCTAAGATCGGTCCGGATCGAGGGTTCCGG
248 AT-CCCATATCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTCCGG
31791972 TAGC
312 TAGC
31791976 AGGATCGGTA
Statistics
Matches: 268, Mismatches: 44, Indels: 18
0.81 0.13 0.05
Matches are distributed among these distances:
385 62 0.23
387 1 0.00
388 99 0.37
393 1 0.00
394 1 0.00
395 2 0.01
398 99 0.37
399 3 0.01
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (387 bp):
GCTTGCGCATTCTACCTCTCCGACCGGCTGAGCACCCGCACGCTCATTTCAAGGGTTGGCTTAGG
CATACGAAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAAGGTTATGGCGCAAGACCGACAGC
GAGATCAGTAGCACGCAGAGGGGGACCGGGCTGATCCCCGACTTACACATTATGCCTCTCCGGTC
GACTGAGCACCCCCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCATATCTAA
GCATACGAAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTCCGGTAGCTGGACCGAGG
GTTGCGGTAGTAGGACCATGAGCAGGATCAGCAGCATGCAGGGGGGACCTGGTCGATCCTAA
Found at i:31792425 original size:26 final size:26
Alignment explanation
Indices: 31792395--31792447 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31792385 GTTGGCTTAG
*
31792395 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
31792421 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
31792447 G
1 G
31792448 ATCAAACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:31792547 original size:184 final size:184
Alignment explanation
Indices: 31792237--31792606 Score: 452
Period size: 184 Copynumber: 2.0 Consensus size: 184
31792227 GTTGACTTAG
* * * * * *
31792237 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCAGCAGTAAGATCGATA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAAACCAGACAGAGGGTTGCAGCAGCAAGATCGACA
* * ** * * **
31792302 GCACGTAGGAGGGACCGGGCCGATCCCCGACTTGCGCATTCTTTCTCTCTATCTGGCTGAGCGCC
66 GCACGCAGGAGGGACCGGGCCGATCCCCGACTTACGCATTCTACCTCTCCAGCCAGCTGAGCGCC
* *
31792367 CGCACGCCCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
131 CGCACACCCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAA
** * *
31792421 GCATACGAAGTTCATTCCCAGTCTAAGATCAAACCAGACAGAGGGTTGGGGTAGCAGGATCGACA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAAACCAGACAGAGGGTTGCAGCAGCAAGATCGACA
* * * * *
31792486 GCACGCAGGGGGGATCGGGTCGATCCCCGACTTACGTATTCTACCTCTCCGGCCAGCTGAGCGCC
66 GCACGCAGGAGGGACCGGGCCGATCCCCGACTTACGCATTCTACCTCTCCAGCCAGCTGAGCGCC
* * * ** * *
31792551 TGCATACCCGTTTTGTGTGTTGACTTAGGCATATGGAGTTCATTCCATGTCTAA
131 CGCACACCCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAA
31792605 GC
1 GC
31792607 CCCAGCCGGA
Statistics
Matches: 154, Mismatches: 32, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
184 154 1.00
ACGTcount: A:0.22, C:0.26, G:0.27, T:0.24
Consensus pattern (184 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCAAACCAGACAGAGGGTTGCAGCAGCAAGATCGACA
GCACGCAGGAGGGACCGGGCCGATCCCCGACTTACGCATTCTACCTCTCCAGCCAGCTGAGCGCC
CGCACACCCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAA
Found at i:31792781 original size:159 final size:158
Alignment explanation
Indices: 31792421--31792784 Score: 356
Period size: 159 Copynumber: 2.3 Consensus size: 158
31792411 CCATGTCTAA
* * * ** *
31792421 GCATACGAAGTTCATTCCCAGTCTAAGATCAAACCAGACAGAGGGTTGGGGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGGGACAACAGGATCGACA
* * ** *
31792486 GCACGCAGGGGGGATCGGGTCGATCCCCGACTTACGTATTCTACCTCTCCGGCCAGCTGAGCGCC
66 GCACGCAGGGGAGATCGGGCCGATCCCCGACTTACCCATTCTACCTCTCCGGCCAGCTCAGCGCC
* * * *
31792551 TGCATACCCGTTTTGTGTGTTGACTTAG
131 TGCACACCCATTTTATGGGTTGACTTAG
* ** * * * * *
31792579 GCATATGGAGTTCATT-CCATGTCTAAGCCCCAG-CCGGATCGAGGGTTGTGACAACGGGATCGG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCAGACCGAGGGTTGGGACAACAGGATCGA
* * * * * * *
31792642 TAGCACGCAGAGGGAGA-CTGGGCCGATCCGCGACTTGCCCATTTTGCCTCTTCGGCCGGCTCAG
64 CAGCACGCAG-GGGAGATC-GGGCCGATCCCCGACTTACCCATTCTACCTCTCCGGCCAGCTCAG
* * * * *
31792706 TGCCTGGACGCTCATTTTATGGGTTGACTTAT
127 CGCCTGCACACCCATTTTATGGGTTGACTTAG
31792738 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTT
31792785 CAGGAATGAC
Statistics
Matches: 160, Mismatches: 40, Indels: 11
0.76 0.19 0.05
Matches are distributed among these distances:
157 3 0.02
158 55 0.34
159 99 0.62
160 3 0.02
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGGGACAACAGGATCGACA
GCACGCAGGGGAGATCGGGCCGATCCCCGACTTACCCATTCTACCTCTCCGGCCAGCTCAGCGCC
TGCACACCCATTTTATGGGTTGACTTAG
Found at i:31792918 original size:26 final size:26
Alignment explanation
Indices: 31792889--31792941 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
31792879 GTTGACTTAG
*
31792889 GCATACGAAATTCATCCCCAGTTTAA
1 GCATACGAAATTCATCCCCAGTCTAA
* * *
31792915 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAATTCATCCCCAGTCTAA
31792941 G
1 G
31792942 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAATTCATCCCCAGTCTAA
Found at i:31794078 original size:159 final size:159
Alignment explanation
Indices: 31793890--31794429 Score: 468
Period size: 158 Copynumber: 3.4 Consensus size: 159
31793880 CTCTGGCTGG
** *
31793890 CTGAGCGCCTACACGC-CCATTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG
1 CTGAGCGCCCGCACGCTCC-TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG
** * * *
31793954 CCCCAGTCGGACCGAGGGTTGTGGCAGCATGACCGACAGCATGCAGAAGGGGACCGAGCCGATCC
65 CCCCAACCGGACTGAGGGTTGTGGCAGCAGGACCGACAGCACGCAGAAGGGGACCGAGCCGATCC
**
31794019 TCGGCTTGTGCATTCTGCCTCTCCGACCGA
130 TCGGCTTACGCATTCTGCCTCTCCGACCGA
* * *
31794049 CTGAGCGCCCGCACGCTCCTTTCGTGGGTTGGCTAATGCATAGGGA-TTCATTCCATATCTAAGC
1 CTGAGCGCCCGCACGCTCCTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
** * * * *
31794113 CCCAACCGGACTGAGGGTTGTGGCAGTGGGACTTG-CAGCACGCAGATA-AGGATC-AGGTCGAT
66 CCCAACCGGACTGAGGGTTGTGGCAGCAGGAC-CGACAGCACGCAGA-AGGGGACCGA-GCCGAT
** * ***
31794175 CCTCGAATTACGCATTATGCCTCTCCGGTTGGA
128 CCTCGGCTTACGCATTCTGCCTCTCC-GACCGA
* * * * ** *
31794208 -TCAACGCTCGCACGCTCGTTTCGTGGGTTGATTTAGGCATATGGAGTTCATTCCCA-GTCTAAG
1 CTGAGCGCCCGCACGCTCCTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAG
** * * * ** * * * * * * *
31794271 ATCGAACCAGACTGAGGGTTGCGATAGCAGGATCGATAGCACGTA-AGGGGGACTGGGCCGGTCC
65 CCCCAACCGGACTGAGGGTTGTGGCAGCAGGACCGACAGCACGCAGAAGGGGACCGAGCCGATCC
* *
31794335 -CTAGCTTACGCATTCTGCCTCTCCGACCGG
130 TC-GGCTTACGCATTCTGCCTCTCCGACCGA
* * * * * *
31794365 TTGAGCGCCTGCATGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCGTTCCATGTCTAAGC
1 CTGAGCGCCCGCACGCTCCTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
31794430 ATATAGAGTT
Statistics
Matches: 294, Mismatches: 74, Indels: 27
0.74 0.19 0.07
Matches are distributed among these distances:
157 7 0.02
158 197 0.67
159 85 0.29
160 5 0.02
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.25
Consensus pattern (159 bp):
CTGAGCGCCCGCACGCTCCTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
CCCAACCGGACTGAGGGTTGTGGCAGCAGGACCGACAGCACGCAGAAGGGGACCGAGCCGATCCT
CGGCTTACGCATTCTGCCTCTCCGACCGA
Found at i:31794432 original size:26 final size:25
Alignment explanation
Indices: 31794402--31794453 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 25
31794392 GTTGGCTTAG
* *
31794402 GCATACGGAGTTCGTTCCATGTCTAA
1 GCATACAGAGTTCATTCCA-GTCTAA
*
31794428 GCATATAGAGTTCATTCCAGTCTAA
1 GCATACAGAGTTCATTCCAGTCTAA
31794453 G
1 G
31794454 ATTGAACCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31
Consensus pattern (25 bp):
GCATACAGAGTTCATTCCAGTCTAA
Found at i:31795173 original size:26 final size:26
Alignment explanation
Indices: 31795123--31795175 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
31795113 CTTAGCATAG
* *
31795123 GCATATGGAGTTCATTCCACGTCTAA
1 GCATACGGAGTTCATTCCACATCTAA
31795149 GCATACGGAGTTCATTCC-CAATCTAA
1 GCATACGGAGTTCATTCCAC-ATCTAA
31795175 G
1 G
31795176 ATCAAATTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCACATCTAA
Found at i:31795362 original size:26 final size:26
Alignment explanation
Indices: 31795332--31795382 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
31795322 GTTGACTTAG
*
31795332 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
31795358 GCATACGAAGTTCATTCCCAGTCTA
1 GCATACGAAGTTCATCCCCAGTCTA
31795383 GGATTAGACC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.29, G:0.18, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:31797355 original size:26 final size:26
Alignment explanation
Indices: 31797319--31797371 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
31797309 GTTGGCTTAG
31797319 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
31797345 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
31797371 G
1 G
31797372 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:31797716 original size:26 final size:26
Alignment explanation
Indices: 31797686--31797738 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
31797676 GTTGACTTAG
31797686 GCATACGGAGTTCA-TCTCCAGTCTAA
1 GCATACGGAGTTCATTC-CCAGTCTAA
31797712 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
31797738 G
1 G
31797739 ATCTGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:31798017 original size:158 final size:158
Alignment explanation
Indices: 31797807--31798214 Score: 480
Period size: 158 Copynumber: 2.6 Consensus size: 158
31797797 TGATCCCTGG
* * *
31797807 CTTGCGCATTCTGCCTCTCCGGTCGACTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGC
1 CTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGC
** * * * *
31797872 ATAGGGAGTTCATTCCGTGTCTAAGCCCCAGTC-GGACCGAGGGTTGCGGTAGCGGGACCGACAA
66 ATACAGAGTTCATTCC-TGTCTAAGCACCAGACTGAACCGAGGGTTGCGGTAGCAGGACCGACAA
31797936 CACGTAGAAGGGGA-CGGGCTGAACCCCGA
130 CACGTA-AAGGGGATCGGGCTGAACCCCGA
* * * * * * * *
31797965 CTTGTGCATTATGCCTCTCCGACCGGCTCAGCGCCCGAACGCTCGTTCCGTGGGTCGACTTAGGC
1 CTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGC
* * *
31798030 ATACAGAGTTCATTCCTAGTCTAAG-ATCAGACTGAACCGAGGGTTGCGGTAGCAGGATCGACAG
66 ATACAGAGTTCATTCCT-GTCTAAGCACCAGACTGAACCGAGGGTTGCGGTAGCAGGACCGACAA
* ** *
31798094 CACGTAAGGGGGATCGGGCTGGTCCCCGG
130 CACGTAAAGGGGATCGGGCTGAACCCCGA
* * * * * *
31798123 CTTACGCATTCTACCTCTCTGGCTGGCTGAACGCCCGCACGCTTGTTTCGTGGGTTGGCTTAGGC
1 CTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGC
*
31798188 ATACAAAGTTCATTCCATGTCTAAGCA
66 ATACAGAGTTCATTCC-TGTCTAAGCA
31798215 TACAGAGTTC
Statistics
Matches: 206, Mismatches: 39, Indels: 9
0.81 0.15 0.04
Matches are distributed among these distances:
157 11 0.05
158 193 0.94
159 2 0.01
ACGTcount: A:0.18, C:0.29, G:0.30, T:0.23
Consensus pattern (158 bp):
CTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGC
ATACAGAGTTCATTCCTGTCTAAGCACCAGACTGAACCGAGGGTTGCGGTAGCAGGACCGACAAC
ACGTAAAGGGGATCGGGCTGAACCCCGA
Found at i:31798223 original size:26 final size:26
Alignment explanation
Indices: 31798186--31798238 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31798176 GTTGGCTTAG
31798186 GCATACAAAGTTCATT-CCATGTCTAA
1 GCATACAAAGTTCATTCCCA-GTCTAA
*
31798212 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
31798238 G
1 G
31798239 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAGTCTAA
Found at i:31798412 original size:26 final size:26
Alignment explanation
Indices: 31798382--31798434 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
31798372 GTTGACTTGG
*
31798382 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
31798408 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
31798434 G
1 G
31798435 ATTAAATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:31799247 original size:159 final size:159
Alignment explanation
Indices: 31799034--31799621 Score: 441
Period size: 159 Copynumber: 3.7 Consensus size: 159
31799024 GCACGCAGGG
* * *
31799034 GGGATCAGGG-CGATCCCC-AGCTTACACATTCTGCCTCTCCGGTCGGCTGAGCACCCGTATGCC
1 GGGATC-GGGCCGATCCCCGA-CTTGCACATTCTGCCTCTCCGGTCGGCTGAGCACCCGCACGCC
* * * * *
31799097 CGTTTTATGGGTTGGCTTTGGCATAGTGAGTTCATTCCATGTCTAAGCCCCAACCAGA-TCGAGG
64 CGTTTCATGGGTTAGCTTAGGCATAGGGAGTTCATTCCATGTCGAAGCCCCAACCAGACT-GAGG
* *
31799161 GTTGTGGCAGCAAGACCGATAAAAAGTAGAGA
128 GTTGTGGCAGCAAGACCGACAAAAAGCAGAGA
* * * *
31799193 GGGATCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGGTTGAGCACCTGCACGCTCG
1 GGGATCGGGCCGATCCCCGACTTGCACATTCTGCCTCTCCGGTCGGCTGAGCACCCGCACGCCCG
** *
31799258 TTTCATGGGTTAGCTTAGGCATAGGGAGTTCATTCCATGTCGAAGCCCCAGTCGGACTGAGGGTT
66 TTTCATGGGTTAGCTTAGGCATAGGGAGTTCATTCCATGTCGAAGCCCCAACCAGACTGAGGGTT
** * * *
31799323 GTGGCAGCGGGACCGACAATACGCAGAGG
131 GTGGCAGCAAGACCGACAAAAAGCAGAGA
* * * * * * * * * * * **
31799352 GGGACCGGGCCGATCCTCGGCTTGCATATTATGCCTCTTCGATCAGCTCAACGCCCGCACGCTTG
1 GGGATCGGGCCGATCCCCGACTTGCACATTCTGCCTCTCCGGTCGGCTGAGCACCCGCACGCCCG
* * * * * ** * *
31799417 TTTCGTGGGTT-GACTTATGCATACGGAGTTCATTCCCA-ATCTAAGATCGAACCAGACCGAGGG
66 TTTCATGGGTTAG-CTTAGGCATAGGGAGTTCATT-CCATGTCGAAGCCCCAACCAGACTGAGGG
* * * * * * * * * *
31799480 TTGAGGTAGCAGGATCAACCACACGTAG-GG
129 TTGTGGCAGCAAGACCGACAAAAAGCAGAGA
* * * * ** * ** * *
31799510 GGAGACCGGGCTGATCCCCAACTTGCGCATTCTGCCTCTCCGACCGGTTGAGTGCCCGCATGCTC
1 GG-GATCGGGCCGATCCCCGACTTGCACATTCTGCCTCTCCGGTCGGCTGAGCACCCGCACGCCC
* * * * * *
31799575 ATTTCGTTGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
65 GTTTCATGGGTTAGCTTAGGCATAGGGAGTTCATTCCATGTCGAAGC
31799622 ATACAGAGTT
Statistics
Matches: 343, Mismatches: 78, Indels: 16
0.78 0.18 0.04
Matches are distributed among these distances:
158 11 0.03
159 326 0.95
160 6 0.02
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (159 bp):
GGGATCGGGCCGATCCCCGACTTGCACATTCTGCCTCTCCGGTCGGCTGAGCACCCGCACGCCCG
TTTCATGGGTTAGCTTAGGCATAGGGAGTTCATTCCATGTCGAAGCCCCAACCAGACTGAGGGTT
GTGGCAGCAAGACCGACAAAAAGCAGAGA
Found at i:31799296 original size:553 final size:536
Alignment explanation
Indices: 31798103--31799303 Score: 1339
Period size: 537 Copynumber: 2.2 Consensus size: 536
31798093 GCACGTAAGG
* * * * * * * *
31798103 GGGATCGGGCTGGTCCCCGGCTTACGCATTCTACCTCTCTGGCTGGCTGAACGCCCGCACGCTTG
1 GGGATCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGC-GGCTGAGCGCCCGCACGCTCG
* **
31798168 TTTCGTGGGTTGGCTTAGGCATACAAAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAG
65 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAG
* * ** *
31798233 TCTAAGATCAGATCGGACCAAGGGTCGCAACAGCAGGACCAGCAGTAGGATCGGTAGCACGCAGG
130 TCTAAGATCAGACCGGACCAAGGGTCACAACAGCAGGACCAGCAACAGGATCAGTAGCACGCAGG
* * *
31798298 GGGGATCGGGTCGATCCCCAACTTTTGCATTCCACCTCTCCGATCGGCTAAACCCCCACACGCTC
195 GGGGATCGGGCCGATCCCCAACTTTTGCATTCCACCTCTCCGATCGGCTAAACACCCACACACTC
** * * *
31798363 GTTTCATGGGTTGACTTGGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCA
260 GTTTCATAAGTTGACTTAGGCATACGGAGTTCATCCCCAATATAAGCATACAGAGTTCATTCCCA
* *
31798428 GTCTAAGATTAAATCAGACTGAGGGTTACAACAATAGGATCGACAGCATGCAGGGGGATCGGGTC
325 GTCTAAGATTAAATCAGACTGAGGGTTACAACAACAGGATCGACAGCACGCAGGGGGATCGGGTC
* * * * * *
31798493 GATCCCCGGCTTGCGCATTCTGCCTCTTCAATCGACTCAGCGCCCATATGCCCGTTTCGTGGGTT
390 GATCCCCAGCTTACACATTCTGCCTCTCCAATCGACTCAGCACCCATATGCCCGTTTCATGGGTT
** * * * *
31798558 GGCTTAGGCATGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAAGGTTGTGGTAGTAGGA
455 GGCTTAGGCATGGGAGTTCATTCCATGTCTAAGCCCCAACCAGACCGAAGGTTGTGGCAGCAAGA
* * *
31798623 TCGACAAAACGCAGAGG
520 CCGACAAAAAGCAGAGA
* * * * * * * ** *
31798640 GGGATCAGACCGATCCTCGATTTGTGCATTTTGTCTCTCCGGCCTACTGAGCGCCCGTACGCTCG
1 GGGATCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGG-CGGCTGAGCGCCCGCACGCTCG
* * *
31798705 TTTCATGGGTTGGCTTAGGCATACGGAGCGT-ATTCCATGTCTAAGCATACTGAGTTGATTCCCA
65 TTTCATGGGTTGGCTTAGGCATACGGAG-TTCATTCCATGTCTAAGCATACAGAGTTCATTCCCA
* * * *
31798769 GTCTAAGATCAGACCGGACCGAGGGTTACGACAGCAGGACCAGCAACAGGATCAGTAGCACGTAG
129 GTCTAAGATCAGACCGGACCAAGGGTCACAACAGCAGGACCAGCAACAGGATCAGTAGCACGCAG
* * ***
31798834 GGGTGGATCGGGCCGATCCCCGACTTTTGTATTTTGCCTCTCCGATCGGCATATCCGGCTAGAAG
194 GGG-GGATCGGGCCGATCCCCAACTTTTGCATTCCACCTCT-C---C-G---AT-CGGCT--AA-
** * *
31798899 AGCACCCGTACACTCGTTTCGTAAGTTGATTTAGGCATACGGAGTTCATCCCCAATATAAGCATA
246 A-CACCCACACACTCGTTTCATAAGTTGACTTAGGCATACGGAGTTCATCCCCAATATAAGCATA
* * ** * **
31798964 CGGAGTTCATTCCCAGTCTAAGATTGAA-CTAGA-TCGAGGGTTACGGCAGCAGGATCGGTAGCA
310 CAGAGTTCATTCCCAGTCTAAGATTAAATC-AGACT-GAGGGTTACAACAACAGGATCGACAGCA
** * * *
31799027 CGCAGGGGGGATCAGGG-CGATCCCCAGCTTACACATTCTGCCTCTCCGGTCGGCTGAGCACCCG
373 CGCA-GGGGGATC-GGGTCGATCCCCAGCTTACACATTCTGCCTCTCCAATCGACTCAGCACCCA
* * * *
31799091 TATGCCCGTTTTATGGGTTGGCTTTGGCATAGTGAGTTCATTCCATGTCTAAGCCCCAACCAGAT
436 TATGCCCGTTTCATGGGTTGGCTTAGGCAT-GGGAGTTCATTCCATGTCTAAGCCCCAACCAGAC
* * *
31799156 CGAGGGTTGTGGCAGCAAGACCGATAAAAAGTAGAGA
500 CGAAGGTTGTGGCAGCAAGACCGACAAAAAGCAGAGA
* * *
31799193 GGGATCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGGTTGAGCACCTGCACGCTCG
1 GGGATCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGG-CGGCTGAGCGCCCGCACGCTCG
* * *
31799258 TTTCATGGGTTAGCTTAGGCATAGGGAGTTCATTCCATGTCGAAGC
65 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
31799304 CCCAGTCGGA
Statistics
Matches: 538, Mismatches: 104, Indels: 28
0.80 0.16 0.04
Matches are distributed among these distances:
537 160 0.30
538 33 0.06
539 1 0.00
542 1 0.00
543 1 0.00
546 2 0.00
547 5 0.01
549 2 0.00
550 3 0.01
551 106 0.20
552 73 0.14
553 151 0.28
ACGTcount: A:0.22, C:0.26, G:0.27, T:0.24
Consensus pattern (536 bp):
GGGATCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCGGCTGAGCGCCCGCACGCTCGT
TTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGT
CTAAGATCAGACCGGACCAAGGGTCACAACAGCAGGACCAGCAACAGGATCAGTAGCACGCAGGG
GGGATCGGGCCGATCCCCAACTTTTGCATTCCACCTCTCCGATCGGCTAAACACCCACACACTCG
TTTCATAAGTTGACTTAGGCATACGGAGTTCATCCCCAATATAAGCATACAGAGTTCATTCCCAG
TCTAAGATTAAATCAGACTGAGGGTTACAACAACAGGATCGACAGCACGCAGGGGGATCGGGTCG
ATCCCCAGCTTACACATTCTGCCTCTCCAATCGACTCAGCACCCATATGCCCGTTTCATGGGTTG
GCTTAGGCATGGGAGTTCATTCCATGTCTAAGCCCCAACCAGACCGAAGGTTGTGGCAGCAAGAC
CGACAAAAAGCAGAGA
Found at i:31799623 original size:26 final size:26
Alignment explanation
Indices: 31799594--31799646 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31799584 GTTGGCTTAG
*
31799594 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
31799620 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
31799646 G
1 G
31799647 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:31801012 original size:26 final size:26
Alignment explanation
Indices: 31800969--31801021 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
31800959 TGGGTTGACT
**
31800969 TAAGCATACGGAGGTCATCCCCAGTC
1 TAAGCATACAAAGGTCATCCCCAGTC
* * *
31800995 TAAGCATACAAAGTTCATTCCCTGTC
1 TAAGCATACAAAGGTCATCCCCAGTC
31801021 T
1 T
31801022 TCGATCAGAC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
TAAGCATACAAAGGTCATCCCCAGTC
Found at i:31803109 original size:26 final size:26
Alignment explanation
Indices: 31803073--31803125 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
31803063 GTTGACTTAG
31803073 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
31803099 GCATACGGAGTTCATTCCCATTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
31803125 G
1 G
31803126 TTCAAATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:31803993 original size:26 final size:26
Alignment explanation
Indices: 31803943--31803994 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
31803933 TTGGCTTACA
**
31803943 CATACGGAGTTCATTCCATGTCTAAG
1 CATACGGAGTTCATTCCATAACTAAG
31803969 CATACGGAGTTCATTCCCA-AACTAAG
1 CATACGGAGTTCATT-CCATAACTAAG
31803995 ATTGGACTGG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATTCCATAACTAAG
Found at i:31804174 original size:26 final size:26
Alignment explanation
Indices: 31804138--31804190 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
31804128 GTTGACTTAG
* *
31804138 GCATACGGAGTTCATACCTAGTCTAA
1 GCATACAGAGTTCATACCCAGTCTAA
*
31804164 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATACCCAGTCTAA
31804190 G
1 G
31804191 ATTGAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATACCCAGTCTAA
Found at i:31804192 original size:196 final size:197
Alignment explanation
Indices: 31803833--31804194 Score: 503
Period size: 196 Copynumber: 1.8 Consensus size: 197
31803823 GAGTGTTACG
* * * *
31803833 GTAGCAGGATCGATAGCACATAAGGGGGGATTGGACCAATCCCCAGCTTGCGCATTCTGCCTCTT
1 GTAGCAGGATCGATAGCACAGAAGGGGGGATCGGACCAATCCCCAGCTTACGCATTCTGCCTCTC
** * * *
31803898 TGGTCGGTTGAGCACCCGCACACTCGTTTTGTGGGTTGGCTTACACATACGGAGTTCATTCCATG
66 CAGTCGGCTGAGCACCCGCACACTCGTTTTGTGGGTTGACTTACACATACGGAGTTCATACCATG
*
31803963 TCTAAGCATACGGAGTTCATTCCCAAACTAAGATTGGACTGGACTGAGGCTGGCGGCAGTAGAAC
131 TCTAAGCATACAGAGTTCATTCCCAAACTAAGATTGGACTGGACTGAGGCTGGCGGCAGTAGAAC
31804028 CA
196 CA
* * * * * * *
31804030 GTAGCAGGATCGGTAGCAC-GCAGGGGGGATCGGGCCGATCCTCAGCTTATGCATTTTGCCTCTC
1 GTAGCAGGATCGATAGCACAGAAGGGGGGATCGGACCAATCCCCAGCTTACGCATTCTGCCTCTC
* **
31804094 CAGTCGGCTGAGCACCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATACC-TA
66 CAGTCGGCTGAGCACCCGCACACTCGTTTTGTGGGTTGACTTACACATACGGAGTTCATACCAT-
**
31804158 GTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATTG
130 GTCTAAGCATACAGAGTTCATTCCCAAACTAAGATTG
31804195 AACCAGACCG
Statistics
Matches: 142, Mismatches: 22, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
195 1 0.01
196 123 0.87
197 18 0.13
ACGTcount: A:0.22, C:0.25, G:0.28, T:0.25
Consensus pattern (197 bp):
GTAGCAGGATCGATAGCACAGAAGGGGGGATCGGACCAATCCCCAGCTTACGCATTCTGCCTCTC
CAGTCGGCTGAGCACCCGCACACTCGTTTTGTGGGTTGACTTACACATACGGAGTTCATACCATG
TCTAAGCATACAGAGTTCATTCCCAAACTAAGATTGGACTGGACTGAGGCTGGCGGCAGTAGAAC
CA
Found at i:31805210 original size:26 final size:26
Alignment explanation
Indices: 31805181--31805233 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
31805171 GTTGACTTAG
31805181 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
31805207 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
31805233 G
1 G
31805234 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:31805523 original size:159 final size:157
Alignment explanation
Indices: 31805207--31805868 Score: 652
Period size: 159 Copynumber: 4.2 Consensus size: 157
31805197 CCCAGTCTAA
** * * *
31805207 GCATACGGAGTTCATTCCCA-GTCTAAGATC-AGACCAGACCGAGGGTTGTGGCAGCAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGCCCTAG-TCAGACCGAGGGTTGTGACAGCAGGACCGA
* * * *
31805270 CAGCACGTAGGGGGGATCGGGCCGATCCCCGACTTACGCATTTTGCCTCTCCGGTCGGTTGAGCG
64 CAGCACGCAGGGGGGATCGGGCTGATCCCCGACTTACGCATTCTACCTCTCCGGTCGGTTGAGCG
* *
31805335 CCCGGATGCCTATTTCATGGGTTGGCTTAG
129 CCCGCATGTC-ATTTCATGGGTTGGCTTAG
* * * ** *
31805365 GCATAGGGAGTTCAATCCATGTCTAAGCCCTAGTCAGACCGAGGGTTGTGGCAGTGGGCCCGACA
1 GCATACGGAGTTCATTCCATGTCTAAGCCCTAGTCAGACCGAGGGTTGTGACAGCAGGACCGACA
* * * ** * *
31805430 GCACGCAGAGGGGGATCGGGCTGATCCCC-AGCTTATGCATTCTGCCTCTTCGACCGGTTCAGCA
66 GCACGCAG-GGGGGATCGGGCTGATCCCCGA-CTTACGCATTCTACCTCTCCGGTCGGTTGAGCG
* *
31805494 CCCGCATGATCATTTCGTGGGTTGACTTAG
129 CCCGCATG-TCATTTCATGGGTTGGCTTAG
* ** * * ** * **
31805524 GAATACGGAGTTCATTCCCA-GTCTAAGATCTAATCAGACCAAGGGTTACGATAGCAGGATTGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGCCCTAGTCAGACCGAGGGTTGTGACAGCAGGACCGAC
* * * *
31805588 AGCACGCAGGGGGGATCGGGCTGATCCCCGACTTACGAATTTTACCTCTCCGGTTGGGTGAGCGC
65 AGCACGCAGGGGGGATCGGGCTGATCCCCGACTTACGCATTCTACCTCTCCGGTCGGTTGAGCGC
* * *
31805653 CCGCACGTCATTTTCGTGGGTTGGCGTAG
130 CCGCATGTCA-TTTCATGGGTTGGCTTAG
* * * * * * * **
31805682 GCATAGGGACTTCATTCCATGTCTACG-CCTCAGCCGGACCGAGGGTTGTGATAGCGGGACCGGT
1 GCATACGGAGTTCATTCCATGTCTAAGCCCT-AGTCAGACCGAGGGTTGTGACAGCAGGACCGAC
* ** **
31805746 AGCACGCAGAGGGGGATCGGG-TCGATCCCTGACTTGTGCATTCTACCTCTCCGGTCGACTGAGC
65 AGCACGCAG-GGGGGATCGGGCT-GATCCCCGACTTACGCATTCTACCTCTCCGGTCGGTTGAGC
*
31805810 GCTCGCATGCTCATTTCATGGGTTGGCTTAG
128 GCCCGCATG-TCATTTCATGGGTTGGCTTAG
31805841 GCATACGGAGTTCATTCCATGTCTAAGC
1 GCATACGGAGTTCATTCCATGTCTAAGC
31805869 ATATGGAGTT
Statistics
Matches: 407, Mismatches: 83, Indels: 26
0.79 0.16 0.05
Matches are distributed among these distances:
157 11 0.03
158 173 0.43
159 216 0.53
160 7 0.02
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGCCCTAGTCAGACCGAGGGTTGTGACAGCAGGACCGACA
GCACGCAGGGGGGATCGGGCTGATCCCCGACTTACGCATTCTACCTCTCCGGTCGGTTGAGCGCC
CGCATGTCATTTCATGGGTTGGCTTAG
Found at i:31805788 original size:317 final size:317
Alignment explanation
Indices: 31805209--31805867 Score: 826
Period size: 317 Copynumber: 2.1 Consensus size: 317
31805199 CAGTCTAAGC
* ** *
31805209 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGACAGC
1 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACGACAGCAGGATCGACAGC
* * * *
31805274 ACGTAGGGGGGATCGGGCCGATCCCCGACTTACGCATTTTGCCTCTCCGGTCGGTTGAGCGCCCG
66 ACGCAGGGGGGATCGGGCCGATCCCCGACTTACGAATTTTACCTCTCCGGTCGGGTGAGCGCCCG
* * * * * *
31805339 GATGCCTATTTCATGGGTTGGCTTAGGCATAGGGAGTTCAATCCATGTCTAAGCCCTAGTCAGAC
131 CACGCATATTTCATGGGTTGGCGTAGGCATAGGGACTTCAATCCATGTCTAAGCCCTAGCCAGAC
* * *
31805404 CGAGGGTTGTGGCAGTGGGCCCGACAGCACGCAGAGGGGGATCGGGCTGATCCCCAGCTTATGCA
196 CGAGGGTTGTGACAGCGGGACCGACAGCACGCAGAGGGGGATCGGGCTGATCCCCAGCTTATGCA
* * ** *
31805469 TTCTGCCTCTTCGACCGGTTCAGCACCCGCATGATCATTTCGTGGGTTGACTTAGGA
261 TTCTACCTCTCCGACCGACTCAGCACCCGCATGATCATTTCATGGGTTGACTTAGGA
* * *
31805526 ATACGGAGTTCATTCCCAGTCTAAGATCTA-ATCAGACCAAGGGTTACGATAGCAGGATTGACAG
1 ATACGGAGTTCATTCCCAGTCTAAGATC-AGACCAGACCAAGGGTTACGACAGCAGGATCGACAG
* *
31805590 CACGCAGGGGGGATCGGGCTGATCCCCGACTTACGAATTTTACCTCTCCGGTTGGGTGAGCGCCC
65 CACGCAGGGGGGATCGGGCCGATCCCCGACTTACGAATTTTACCTCTCCGGTCGGGTGAGCGCCC
* * * *
31805655 GCACGTCAT-TTTCGTGGGTTGGCGTAGGCATAGGGACTTCATTCCATGTCTACG-CCTCAGCCG
130 GCACG-CATATTTCATGGGTTGGCGTAGGCATAGGGACTTCAATCCATGTCTAAGCCCT-AGCCA
* ** *
31805718 GACCGAGGGTTGTGATAGCGGGACCGGTAGCACGCAGAGGGGGATCGGG-TCGAT-CCCTGACTT
193 GACCGAGGGTTGTGACAGCGGGACCGACAGCACGCAGAGGGGGATCGGGCT-GATCCCCAG-CTT
* ** * * * * * *
31805781 GTGCATTCTACCTCTCCGGTCGACTGAGCGCTCGCATGCTCATTTCATGGGTTGGCTTAGGC
256 ATGCATTCTACCTCTCCGACCGACTCAGCACCCGCATGATCATTTCATGGGTTGACTTAGGA
31805843 ATACGGAGTTCATT-CCATGTCTAAG
1 ATACGGAGTTCATTCCCA-GTCTAAG
31805868 CATATGGAGT
Statistics
Matches: 292, Mismatches: 44, Indels: 12
0.84 0.13 0.03
Matches are distributed among these distances:
316 11 0.04
317 278 0.95
318 3 0.01
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (317 bp):
ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACGACAGCAGGATCGACAGC
ACGCAGGGGGGATCGGGCCGATCCCCGACTTACGAATTTTACCTCTCCGGTCGGGTGAGCGCCCG
CACGCATATTTCATGGGTTGGCGTAGGCATAGGGACTTCAATCCATGTCTAAGCCCTAGCCAGAC
CGAGGGTTGTGACAGCGGGACCGACAGCACGCAGAGGGGGATCGGGCTGATCCCCAGCTTATGCA
TTCTACCTCTCCGACCGACTCAGCACCCGCATGATCATTTCATGGGTTGACTTAGGA
Found at i:31806250 original size:26 final size:26
Alignment explanation
Indices: 31806220--31806272 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
31806210 GTTGACTTAG
*
31806220 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAATTCATCCCCAGTCTAA
* *
31806246 GCATACGGAATTCATTCCCAGTCTAA
1 GCATACAGAATTCATCCCCAGTCTAA
31806272 G
1 G
31806273 ATCAAACTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAATTCATCCCCAGTCTAA
Found at i:31806887 original size:316 final size:318
Alignment explanation
Indices: 31806318--31807036 Score: 791
Period size: 316 Copynumber: 2.3 Consensus size: 318
31806308 CTGGCTTGCG
* * * * * * * * * * *
31806318 CATTCTACCTCTCTGGCTGACTGAGTGCCTGCACGCCCATTTCATGGGTTGGGTTAGGCATAGGG
1 CATTCTGCCTCTCTGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGG
*
31806383 AGTTTATTCCATGTCTAAGCCCCAGCCAGACTGAGGGTTGTGGCAACGGTACCGGCAGCACGCAG
66 AGTTCATTCCATGTCTAAGCCCCAGCCAGACTGAGGGTTGTGGCAACGGTACCGGCAGCACGCAG
** * * * ** **
31806448 AGGGGGACCGGATCGATCCTCGATTTGCGCATTATGCCTTTCCGACTAGCTCAGTGCCCGAATGC
131 AGAAGGACCGGACCGATCCCCGACTTGCGCATTATGCCTTTCCGACTAGCTCAACGCCCGAACAC
* * * * *
31806513 TTATTTCGTGGGTCGACTTGGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGG
196 TCATTTCATGGGTCGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGG
* * * * * *
31806578 GTTGCGA-CGCAGGATCGACAGCACGCAGG-GGGGACCAGGCCGGTCCTTGGCTTGTG
261 GTTGCGATAGCAAGATCAACAGCACGCAGGAGGGGACCAGGCCGATCCTCGGCTTGTA
* * * * *
31806634 CATTCTGCCTCTCTGGCCGGCTGAGCGCTCGTACGCTTGTTTCGTGGGTTGGCTTAGGCGTACGG
1 CATTCTGCCTCTCTGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGG
* * * *
31806699 AGTTCATTCCATGTCTAAGCCCCAGTC-GAACTGAGGGTTGTGGCAGCGAG-ACTGGCAGCATGC
66 AGTTCATTCCATGTCTAAGCCCCAGCCAG-ACTGAGGGTTGTGGCAACG-GTACCGGCAGCACGC
** * * * * *
31806762 AGAGAAGGATTGGGCCGATCCCCGACTTGCGCATTATGCCTTTTCG-GTCGGCTCAACGCCCGCA
129 AGAGAAGGACCGGACCGATCCCCGACTTGCGCATTATGCCTTTCCGACT-AGCTCAACGCCCGAA
* * * *
31806826 CACTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTTTAAGATCGGACCAGACCA
193 CACTCATTTCATGGGTCGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCA
** * * * * *
31806891 AGGGTTTTGATAGCAAGATCAATAGCACGTAGGAGGGGATCGGGTCGATCCTCGGCTTGTA
258 AGGGTTGCGATAGCAAGATCAACAGCACGCAGGAGGGGACCAGGCCGATCCTCGGCTTGTA
* * * * * *
31806952 CATTCTGTCTCTCTGACTGGCTGAGTGCCCGCATGCTCGTTTTGTGGGTTGGCTTAGGCATGCGG
1 CATTCTGCCTCTCTGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGG
31807017 AGTTCATTCCATGTCTAAGC
66 AGTTCATTCCATGTCTAAGC
31807037 ATATGGAGTT
Statistics
Matches: 330, Mismatches: 68, Indels: 8
0.81 0.17 0.02
Matches are distributed among these distances:
315 2 0.01
316 215 0.65
317 18 0.05
318 95 0.29
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.26
Consensus pattern (318 bp):
CATTCTGCCTCTCTGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGG
AGTTCATTCCATGTCTAAGCCCCAGCCAGACTGAGGGTTGTGGCAACGGTACCGGCAGCACGCAG
AGAAGGACCGGACCGATCCCCGACTTGCGCATTATGCCTTTCCGACTAGCTCAACGCCCGAACAC
TCATTTCATGGGTCGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGG
GTTGCGATAGCAAGATCAACAGCACGCAGGAGGGGACCAGGCCGATCCTCGGCTTGTA
Found at i:31807919 original size:25 final size:26
Alignment explanation
Indices: 31807890--31807939 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 26
31807880 TTGACTTAAG
*
31807890 CATACAGAGTTCA-TCCCAGTCTAAA
1 CATACAGAGTTCATTCCAAGTCTAAA
*
31807915 CATACGGAGTTCATTCCAAGTCTAA
1 CATACAGAGTTCATTCCAAGTCTAA
31807940 GATCTAATGG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 12 0.55
26 10 0.45
ACGTcount: A:0.34, C:0.26, G:0.14, T:0.26
Consensus pattern (26 bp):
CATACAGAGTTCATTCCAAGTCTAAA
Found at i:31808060 original size:183 final size:184
Alignment explanation
Indices: 31807732--31808097 Score: 468
Period size: 183 Copynumber: 2.0 Consensus size: 184
31807722 TTGACTTAGG
* * * *
31807732 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCAGGATCGATGG
1 CATACGGAGTTCATTCCAAGTCTAAGATCGAACCGGACCGAGGGTTACGACAGCAGGATCGATAG
* * * * * *
31807797 CACGTAGGGGGGACCAGGCAGATCCTCGACTTGCGTATTCTGCCTCTCCGACCGACTGAGCGCAT
66 CACGCAGGGGGGACCAGACAGATCCCCGACTTACGAATTCTGCCTCTCCGACCGACTGAGCGCAC
* *
31807862 GCACGCTCGTTTCATGGGTTGACTTAAGCATACA-GAGTTCATCCCA-GTCTAAA
131 GCACGCCCGTTTCATGGATTGACTTAAGCATA-AGGAGTTCATCCCATGTCTAAA
* **
31807915 CATACGGAGTTCATTCCAAGTCTAAGATCTAATGGGACCGAGGGTTACGACAGCAGGATCGATAG
1 CATACGGAGTTCATTCCAAGTCTAAGATCGAACCGGACCGAGGGTTACGACAGCAGGATCGATAG
* * ** * *
31807980 CACGCAGGGGGGACC-GAACCGATCCCCGACTTACGAATTCTGCCTCTTCGACCGGGTGTGCGCC
66 CACGCAGGGGGGACCAG-ACAGATCCCCGACTTACGAATTCTGCCTCTCCGACCGACTGAGCGCA
* * * *
31808044 CGCACGCCCTTTTCATGGATTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAA
130 CGCACGCCCGTTTCATGGATTGACTTAAGCATAAGGAGTTCATCCCATGTCTAA
31808098 GCCCCAGCCC
Statistics
Matches: 155, Mismatches: 25, Indels: 5
0.84 0.14 0.03
Matches are distributed among these distances:
182 2 0.01
183 147 0.95
184 6 0.04
ACGTcount: A:0.23, C:0.27, G:0.27, T:0.22
Consensus pattern (184 bp):
CATACGGAGTTCATTCCAAGTCTAAGATCGAACCGGACCGAGGGTTACGACAGCAGGATCGATAG
CACGCAGGGGGGACCAGACAGATCCCCGACTTACGAATTCTGCCTCTCCGACCGACTGAGCGCAC
GCACGCCCGTTTCATGGATTGACTTAAGCATAAGGAGTTCATCCCATGTCTAAA
Found at i:31808268 original size:26 final size:26
Alignment explanation
Indices: 31808232--31808281 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
31808222 GGCTTAGGCA
31808232 TACGGAGTTCATT-CCATGTCTAAGCG
1 TACGGAGTTCATTCCCA-GTCTAAGCG
31808258 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
31808282 AGTTTCAGCC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCG
Found at i:31809489 original size:26 final size:26
Alignment explanation
Indices: 31809437--31809489 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
31809427 GTTGGCTTAG
* * *
31809437 GCATACGGAGTTTATTCCATGTCTAA
1 GCATACGAAGTTCATTCCATGTATAA
31809463 GCATACGAAGTTCATTCCCA-GTATAA
1 GCATACGAAGTTCATT-CCATGTATAA
31809489 G
1 G
31809490 ATCGGATCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATGTATAA
Found at i:31809842 original size:26 final size:26
Alignment explanation
Indices: 31809806--31809858 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
31809796 GTTGAATTAG
31809806 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
31809832 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
31809858 G
1 G
31809859 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:31810342 original size:26 final size:26
Alignment explanation
Indices: 31810305--31810357 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31810295 GTTAGCTTAT
*
31810305 GCATACGGAGTTCATTC-CATGTCTAA
1 GCATACGAAGTTCATTCTCA-GTCTAA
31810331 GCATACGAAGTTCATTCTCAGTCTAA
1 GCATACGAAGTTCATTCTCAGTCTAA
31810357 G
1 G
31810358 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCTCAGTCTAA
Found at i:31810714 original size:25 final size:26
Alignment explanation
Indices: 31810685--31810736 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
31810675 GTTGACTTAG
31810685 GCATAC-GAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
31810710 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
31810736 G
1 G
31810737 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 6 0.25
26 18 0.75
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:31811170 original size:368 final size:366
Alignment explanation
Indices: 31810486--31811288 Score: 916
Period size: 368 Copynumber: 2.2 Consensus size: 366
31810476 CACTCTTGTT
* * *
31810486 TCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATATCTAAGCCCCAGCCAGACCGAGGGTTGT
1 TCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCAGACCGAGGGTTGT
* * *
31810551 GGCAGCAGGACCGATAGCGGGATCAACAGCACGCAAAAGGGATCGAGCTGATCCCTGACTTACGC
66 GGCAGCAGAACCGACAACGGGATCAACAGCACGCAAAAGGGATCGAGCTGATCCCTGACTTACGC
* **** * * *
31810616 ATTATACCTCTCCAGTCGACCTCTCTGGCCGGTTGAGCACCCGCACGCTCGTTTCATGGGTTGAC
131 ATTATACCTCTCCAGCCGACCTCTCTGGCCGACACAGCACCCGCACGATCATTTCATGAGTTGAC
* *
31810681 TTAGGCATACGAGTTCATCCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCG
196 TTAGGCATACGAGTTCACCCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAATCG
* * * * *
31810746 GACCGAGGGTTGTGACAGCAGGATCGGTAATATGCAGGGGGGATCGAGTCGATCCCTGACTTGCG
261 GACCGAGGGTTGCGACAGCAGGATCGGCAACACGCAGGGGGGATCAAGTCGATCCCTGACTTGCG
* **
31810811 CATTCTGCCTCTTC-GGTCGACTAAGCACCCATACGTTCGTC
326 CATTCTACCTCTTCAACT-GACTAAGCACCCATACGTTCGTC
* * ** *
31810852 TCGTGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACTGGATCGAGGGTTGT
1 TCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCAGACCGAGGGTTGT
* * * * ** **
31810917 GGCAGCAGAACTGGCAACGGGATCAGCAGCATGCAGAGGGGGATCGAGCTGATCCCCTG-CTTGT
66 GGCAGCAGAACCGACAACGGGATCAACAGCACGCA-AAAGGGATCGAGCTGAT-CCCTGACTTAC
* * * * * * *
31810981 GCATTATGCCTCTTCGGCC-AGCCTCT-TCGGTCGACACAGCGCCCGTACGATCATTTCGTGAGT
129 GCATTATACCTCTCCAGCCGA-CCTCTCT-GGCCGACACAGCACCCGCACGATCATTTCATGAGT
* * * *
31811044 TGACTTAGGCATACGGAGTTCGCCCCCAGTCTAAGCATATGGAGTTCATTCCTAGTCTAAGATCA
192 TGACTTAGGCATAC-GAGTTCACCCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCA
* * *
31811109 AATCGGACCGAGGTTTGCGACAGTAGGATCGGCAGCACGCAGGGGGG-TCCAAG-CTGATCCCTG
256 AATCGGACCGAGGGTTGCGACAGCAGGATCGGCAACACGCAGGGGGGAT-CAAGTC-GATCCCTG
* * * * * *
31811172 ACTTTCGCATTCTACCTTTTCAACTGGCTGAGCACCTATACGTTCGTT
319 ACTTGCGCATTCTACCTCTTCAACTGACTAAGCACCCATACGTTCGTC
** * * * * *
31811220 TCATGGGTTGGCTTAGGCATTGGGAGTTTATTCCATGTCTAAGCCCTAGCCAGACTGAAGGTTGT
1 TCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCAGACCGAGGGTTGT
31811285 GGCA
66 GGCA
31811289 ACAGGACTGG
Statistics
Matches: 360, Mismatches: 69, Indels: 14
0.81 0.16 0.03
Matches are distributed among these distances:
366 87 0.24
367 78 0.22
368 194 0.54
369 1 0.00
ACGTcount: A:0.22, C:0.26, G:0.27, T:0.25
Consensus pattern (366 bp):
TCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCAGACCGAGGGTTGT
GGCAGCAGAACCGACAACGGGATCAACAGCACGCAAAAGGGATCGAGCTGATCCCTGACTTACGC
ATTATACCTCTCCAGCCGACCTCTCTGGCCGACACAGCACCCGCACGATCATTTCATGAGTTGAC
TTAGGCATACGAGTTCACCCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAATCG
GACCGAGGGTTGCGACAGCAGGATCGGCAACACGCAGGGGGGATCAAGTCGATCCCTGACTTGCG
CATTCTACCTCTTCAACTGACTAAGCACCCATACGTTCGTC
Found at i:31812164 original size:879 final size:882
Alignment explanation
Indices: 31810855--31812493 Score: 1950
Period size: 879 Copynumber: 1.9 Consensus size: 882
31810845 GTTCGTCTCG
*
31810855 TGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACTGGATCGAGGGTTGTGGC
1 TGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACTGGACCGAGGGTTGTGGC
* * * * *
31810920 AGCAGAACTGGCAACGGGATCAGCAGCATGCAGAGGGGGATCGAGCTGATCCCCTGCTTGTGCAT
66 AGCAGAACTGGCAACGAGATCAGCAGCACGCAGAGAGGGACCGAGCTGATCCCCTGCTTGCGCAT
* * * * * * * *
31810985 TATGCCTCTTCGGCCAGCCTCTTCGGTCGACACAGCGCCCGTACGATCATTTCGTGAGTTGACTT
131 TATACCTCTCCGACCAGCCTCTTCGGCCGACACAACACCCGCACGATCATTTCATGAGTTGACTT
* * * *
31811050 AGGCATACGGAGTTCGCCCCCAGTCTAAGCATATGGAGTTCATTCCTAGTCTAAGATCAAATCGG
196 AGGCATACGGAGTTCACCCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAATCGG
* * *
31811115 ACCGAGGTTTGCGACAGTAGGATCGGCAGCACGCAGGGGGGTCCAAGCTGATCCCTGACTTTCGC
261 ACCGAGGGTTGCGACAGCAGGATCGGCAGCACGCAGGGGGGTCCAAGCTGATCCCTGACTTGCGC
* * * * * * * *
31811180 ATTCTACCTTTTCAACTGGCTGAGCACCTATACGTTCGTTTCATGGGTTGGCTTAGGCATTGGGA
326 ATTATACCTTCTCAACCGACTGAGCACCCATACGCTCGTTTCATGGGTTGACTTAGGCATAGGGA
* * * * * *
31811245 GTTTATTCCATGTCTAAGCCCTAGCCAGACTGAAGGTTGTGGCA-ACAGGACTGGCAGCATGCAG
391 GTTCATTCCATGTCTAAGCCCCAGCCAGACAGAAGGTTGTGGCATACA-GACCGACAGCACGCAG
* * * * * * * *
31811309 AGGGGGA-TCGGGTTGATCC-CTGGCTGGCGCATTATGCCTCT-CTGATCGGCTTAGCACCCGAA
455 AAGGGGACT-GGGTCGATCCTC-AGCTGGCGCATTATGCCTCTCCAG-CCGACTCAACACCCGAA
* * *
31811371 CGCTAATTTCGTGGGTTGACTTAGGCATACTGAGTTCATTCCCAGTCTAAGATCGGA-TCAGACC
517 CGCTAATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACT-AGACC
* * * * * *
31811435 GAGGGTTGCAGCA-A-TAGGATCGATAGCACGCA-GGGGGATCGGGTCGGT-CCTTGGCTTACGC
581 AAGGGTTG-AG-ATAGCAGGATCGACAACACGCAGGGGGGATCGGGTCGATACC-CGGCTTACGC
* * * ** ** *
31811496 ATTCAGCCTCTGCGATCGGTTGAGCACCCGCACTCTCATTTCGTGGGTTGGCTTAATCATACAGA
643 ATTCAGCCTCTCCGACCGGCTGAGCACCCGCAAGCTCATTTCACGGGTTGGCTTAAGCATACAGA
* * ** * *
31811561 GTTCATTCCATGTTTAATCATATGGAGTTCATTCCTATTATAAGATCGGACCGGACCAAGGGTTA
708 GTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTATAAGATCGGACCGGACCAAGGGTTA
31811626 TGGCAGCAGGACTAGTAGCAGGATTGGCAGCATACAGAGGGGCATCGGGCTGATCCTCGACATAC
773 TGGCAGCAGGACTAGTAGCAGGATTGGCAGCATACAGAGGGGCATCGGGCTGATCCTCGACATAC
31811691 GCATTTTGCCTCTCCGGCTGACTGATCGCCCACACTCTTGTTTCA
838 GCATTTTGCCTCTCCGGCTGACTGATCGCCCACACTCTTGTTTCA
* *
31811736 TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCC-AGTCGGACCGAGGGTTGTGG
1 TGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACT-GGACCGAGGGTTGTGG
* * * * *
31811800 TAGCAGGACTGGTAGCGAGATCAGGAGCACGCAGA-AGGGACCGAGCTGATCCCC-GACTTGCGC
65 CAGCAGAACTGGCAACGAGATCAGCAGCACGCAGAGAGGGACCGAGCTGATCCCCTG-CTTGCGC
* ** * * * *
31811863 ATTATACCTCTCCGACC-GACCTC-TCTGGCCGGCTGAACACCCGCATGCTCGTTTCATGGGTTG
129 ATTATACCTCTCCGACCAG-CCTCTTC-GGCCGACACAACACCCGCACGATCATTTCATGAGTTG
* * *
31811926 ACTTAGGCATA-TGAGTTCATCCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
192 ACTTAGGCATACGGAGTTCACCCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAA
* * * *
31811990 TCGGACTGAGGGTTGCGACAGCAGGATCGGCAGCACGCAGGGGGGAT-C-GGGTCGAT-CCTCGG
257 TCGGACCGAGGGTTGCGACAGCAGGATCGGCAGCACGCAGGGGGG-TCCAAGCT-GATCCCT-GA
* * * * *
31812052 CTTGCGCATTATGCC-TCTCTGACCGACTGAGCTCCCGTAGGC-CTGTTTCATGGGTTGACTTAG
319 CTTGCGCATTATACCTTCTC-AACCGACTGAGCACCCATACGCTC-GTTTCATGGGTTGACTTAG
* * * * *
31812115 GCATAGGGAGTTCATTCTATGTCTAAGCCCCAGTCGGACAGACGGTTGTGGCATTCAGACCGACA
382 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACAGAAGGTTGTGGCATACAGACCGACA
* * * **
31812180 GCACGCAGAAGGGGACTGGGTCGATTCTCAGCTTGCGTATTATGCCTCTCCAGCCGACTCAATGC
447 GCACGCAGAAGGGGACTGGGTCGATCCTCAGCTGGCGCATTATGCCTCTCCAGCCGACTCAACAC
* * * *
31812245 CCGAACGCTTATTTCATTGGTTGACTTAGGCATACGGAGTTCGTTCCCAGTCTAAGATCAGACTG
512 CCGAACGCTAATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTA
* **
31812310 GACCAAGGGTTGTGATAGCAGGATCGACAACACGCAGGGGGGGATCGGGTCGATACCCGGCTTGT
577 GACCAAGGGTTGAGATAGCAGGATCGACAACACGCA-GGGGGGATCGGGTCGATACCCGGCTTAC
* * * *
31812375 GCATTCTGCCTCTCCGACCGGCTGAGCACCCGCAAGCTCGTTTCACGGGTTGGCTTAGGCATACG
641 GCATTCAGCCTCTCCGACCGGCTGAGCACCCGCAAGCTCATTTCACGGGTTGGCTTAAGCATACA
*
31812440 GAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACC
706 GAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTATAAGATCGGACC
31812494 AGATCGAGGG
Statistics
Matches: 625, Mismatches: 114, Indels: 38
0.80 0.15 0.05
Matches are distributed among these distances:
877 1 0.00
878 11 0.02
879 318 0.51
880 87 0.14
881 206 0.33
882 2 0.00
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.25
Consensus pattern (882 bp):
TGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACTGGACCGAGGGTTGTGGC
AGCAGAACTGGCAACGAGATCAGCAGCACGCAGAGAGGGACCGAGCTGATCCCCTGCTTGCGCAT
TATACCTCTCCGACCAGCCTCTTCGGCCGACACAACACCCGCACGATCATTTCATGAGTTGACTT
AGGCATACGGAGTTCACCCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAATCGG
ACCGAGGGTTGCGACAGCAGGATCGGCAGCACGCAGGGGGGTCCAAGCTGATCCCTGACTTGCGC
ATTATACCTTCTCAACCGACTGAGCACCCATACGCTCGTTTCATGGGTTGACTTAGGCATAGGGA
GTTCATTCCATGTCTAAGCCCCAGCCAGACAGAAGGTTGTGGCATACAGACCGACAGCACGCAGA
AGGGGACTGGGTCGATCCTCAGCTGGCGCATTATGCCTCTCCAGCCGACTCAACACCCGAACGCT
AATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCAAGGG
TTGAGATAGCAGGATCGACAACACGCAGGGGGGATCGGGTCGATACCCGGCTTACGCATTCAGCC
TCTCCGACCGGCTGAGCACCCGCAAGCTCATTTCACGGGTTGGCTTAAGCATACAGAGTTCATTC
CATGTCTAAGCATACAGAGTTCATTCCCAGTATAAGATCGGACCGGACCAAGGGTTATGGCAGCA
GGACTAGTAGCAGGATTGGCAGCATACAGAGGGGCATCGGGCTGATCCTCGACATACGCATTTTG
CCTCTCCGGCTGACTGATCGCCCACACTCTTGTTTCA
Found at i:31812298 original size:159 final size:158
Alignment explanation
Indices: 31811957--31812459 Score: 420
Period size: 159 Copynumber: 3.2 Consensus size: 158
31811947 CCCAATCTAA
* * * * *
31811957 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTGCGACAGCAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGACCAGATCGGACAGACGGTTGCGACAGCAGGACCGACA
* * * * *
31812022 GCACGCAGGGGGGATCGGGTCGATCCTCGGCTTGCGCATTATGCCTCTCTGACCGACTGAGCTCC
66 GCACGCAGAGGGGATCGGGTCGATCCTCAGCTTGCGCATTATGCCTCTCAGACCGACTCAGATCC
* * *
31812087 CGTAGGCCTGTTTCATGGGTTGACTTAG
131 CGAACGCCTATTTCATGGGTTGACTTAG
* * * * * *
31812115 GCATAGGGAGTTCATT-CTATGTCTAAGCCCCAG-TCGGACAGACGGTTGTGGCATTCA-GACCG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ACCAGATCGGACAGACGGTTGCGACA-GCAGGACCG
* *
31812177 ACAGCACGCAGAAGGGGA-CTGGGTCGATTCTCAGCTTGCGTATTATGCCTCTCCAG-CCGACTC
63 ACAGCACGCAG-AGGGGATC-GGGTCGATCCTCAGCTTGCGCATTATGCCTCT-CAGACCGACTC
* *
31812240 A-ATGCCCGAACGCTTATTTCATTGGTTGACTTAG
125 AGAT-CCCGAACGCCTATTTCATGGGTTGACTTAG
* * * * * *
31812274 GCATACGGAGTTCGTTCCCAGTCTAAGATCAGA-CTGGACCA-AGGGTTGTGATAGCAGGATCGA
1 GCATACGGAGTTCATTCCCAGTCTAAGACCAGATC-GGA-CAGACGGTTGCGACAGCAGGACCGA
* * * * * * * *
31812337 CAACACGCAGGGGGGGATCGGGTCGATACC-CGGCTTGTGCATTCTGCCTCTCCGACCGGCTGAG
64 CAGCACGCA-GAGGGGATCGGGTCGAT-CCTCAGCTTGCGCATTATGCCTCTCAGACCGACTCAG
* * *
31812401 CA-CCCGCAA-G-CTCGTTTCACGGGTTGGCTTAG
127 -ATCCCG-AACGCCT-ATTTCATGGGTTGACTTAG
31812433 GCATACGGAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
31812460 CATACAGAGT
Statistics
Matches: 275, Mismatches: 49, Indels: 41
0.75 0.13 0.11
Matches are distributed among these distances:
157 2 0.01
158 66 0.24
159 195 0.71
160 11 0.04
161 1 0.00
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGACCAGATCGGACAGACGGTTGCGACAGCAGGACCGACA
GCACGCAGAGGGGATCGGGTCGATCCTCAGCTTGCGCATTATGCCTCTCAGACCGACTCAGATCC
CGAACGCCTATTTCATGGGTTGACTTAG
Found at i:31812462 original size:26 final size:26
Alignment explanation
Indices: 31812433--31812485 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31812423 GTTGGCTTAG
*
31812433 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
31812459 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
31812485 G
1 G
31812486 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:31812659 original size:26 final size:26
Alignment explanation
Indices: 31812629--31812681 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
31812619 GTTTACTTAG
* *
31812629 GCATACATAGTTCATCCCCAGTTTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
31812655 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
31812681 G
1 G
31812682 ATCGGGTCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:31812967 original size:698 final size:684
Alignment explanation
Indices: 31811909--31813860 Score: 2077
Period size: 698 Copynumber: 2.8 Consensus size: 684
31811899 ACACCCGCAT
*
31811909 GCTCGTTTCATGGGTTGACTTAGGCAT--ATGAGTTCATCCCCAATCTAAGCATACGGAGTTCAT
1 GCTCGTTTCATGGGTTGACTTAGGCATACAT-AGTTCATCCCCAGTCTAAGCATACGGAGTTCAT
* * * * *
31811972 TCCCAGTCTAAGATCAGATCGGACTGAGGGTTGCGACAGCAGGATCGGCAGCACGCAGGGGGGA-
65 TCCCAGTCTAAGATCGGATCGGACCGAGGGTTACGGCAGCAGGATCGACAGCACGCAGGGGGGAC
* * * * * * * *
31812036 TCGGGTCGATCCTCGGCTTGCGCATTATGCCTCTCTGACCGACTGAGCTCCCGTAGGCCTGTTTC
130 T-GGGCCGATCCTCGGCTTGCGCATTCTGCCTCTC-AACTGGCTGAGCGCCCGCACGCCTGTTTC
* * * *
31812101 ATGGGTTGACTTAGGCATAGGGAGTTCATTCTATGTCTAAGCCCC-AGTCGGACAGACGGTTGTG
193 ATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACT-GGACAGAGGGTTGTG
* * * * * * * * *
31812165 GCATTC-AGACCGACAGCACGCAGAAGGGGACTGGGTCGATTCTCAGCTTGCGTATTATGCCTCT
257 GCA-ACGGGACCGGCAGCACGCAGAGGGGGACCGGG-CCAGTCTCGGCTTGCGCATTATGCCTCT
* * *
31812229 CCAGCCGACTCAATGCCCGAACGCTTATTTCATTGGTTGACTTAGGCATACGGAGTTCGTTCCCA
320 CCAGCCGACTCAATGCCCGAACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA
* *
31812294 GTCTAAGATCAGA-CTGGACCAAGGGTTGTGATAGCAGGATCGACAACACGCAGGGGGGGATCGG
385 GTCTAAGATCAGATC-GGACCGAGGGTTGTGA-AGCAGGATCGACAGCACGCA-GGGGGGATCGG
* * * * *
31812358 GTCGATACCCGGCTTGTGCATTCTGCCTCTCCGACCGGCTGAGCACCCGCAAGCTCGTTTCACGG
447 GTCGATCCCCGGCTTGCGCATTCTGCCTCTACGACCGGCTGAGCACCCGCACGCTCGTTTCATGG
31812423 GTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGAT
512 GTTGGCTTAGGCATACGGAGTTCATTCCATGT-TAAGCATACAGAGTTCATTCCCAG--T--GAT
*
31812488 CGGACCAGATCGAGGGTTG-CAGTAGCAGGACCAGCAGCAGAATCGACAGCACGCAGAAAAGGAC
572 C-G----GATCAAGGGTTGCCA-TAGCAGGACCAGCAGCAGAATCGACAGCACGCAG-AAAGGAC
* * * * * * *
31812552 CGGGCTGATCCCCGGCTTGCACTTTCTATCTCTCCGACCAGTT-AGTGCCCGTAC
630 CGAGCCGATCCCCGACTTGCACATCCTACCTCTCCGACCAGTTGAGCGCCCGTAC
* * *
31812606 GCTCGTTTCATGGGTTTACTTAGGCATACATAGTTCATCCCCAGTTTAAGCATACAGAGTTCATT
1 GCTCGTTTCATGGGTTGACTTAGGCATACATAGTTCATCCCCAGTCTAAGCATACGGAGTTCATT
* * * *
31812671 CCCAGTCTAAGATCGGGTCGGACCGAGGGTTACGGCAGTAGGATCAACAGCACGCAGGGGAGACT
66 CCCAGTCTAAGATCGGATCGGACCGAGGGTTACGGCAGCAGGATCGACAGCACGCAGGGGGGACT
* * * * **
31812736 GGGCCGATCCCCGACTTGCGCATTCTGCCTTTTCAACTGGCTGAGCGCCCGCATGCCTGTTTCGC
131 GGGCCGATCCTCGGCTTGCGCATTCTGCC-TCTCAACTGGCTGAGCGCCCGCACGCCTGTTTCAT
* * *
31812801 GGGTTGGCTTAGGCATAGGGAGTTCATTCCATGACTAAACCCCAACTGGACTGAGGGTTGTGGCA
195 GGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACTGGACAGAGGGTTGTGGCA
* * *
31812866 ACGGGACCGGCAGCACGCAGAGGGGGACCGAGCCAGTCTTCGGCTTGTGCATTATGCCTCTCCAA
260 ACGGGACCGGCAGCACGCAGAGGGGGACCGGGCCAGTC-TCGGCTTGCGCATTATGCCTCTCCAG
* ** * * *
31812931 CCGACTCAACGCCCGGGCGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTTATTCCCAATCT
324 CCGACTCAATGCCCGAACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
* * ** * *
31812996 AAGATCGGATCGGACTGAGGGTTGTGGGGTAGGATCGACAGCACGCAAGGGGGATCGGGTCGATC
389 AAGATCAGATCGGACCGAGGGTTGTGAAGCAGGATCGACAGCACGCAGGGGGGATCGGGTCGATC
* * * **
31813061 CCCGGCTTGCGCATTCTACCTCTACGACCGACTGAGCACCCGCACGCTCATTTCATGGGTTACCT
454 CCCGGCTTGCGCATTCTGCCTCTACGACCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGGCT
31813126 TAGGCATACGGAGTTCATTCCATG-T---C-T--A-AG---ATT----G-GATCGGATCAAGGGT
519 TAGGCATACGGAGTTCATTCCATGTTAAGCATACAGAGTTCATTCCCAGTGATCGGATCAAGGGT
* * * * * * *
31813175 TGCCATAGCAGGACCAGCAGCAGCATCGGCAGCATGTAGGAGGGACCGAGCCGATCCCTGACTTG
584 TGCCATAGCAGGACCAGCAGCAGAATCGACAGCACGCAGAAAGGACCGAGCCGATCCCCGACTTG
* * * * *
31813240 CGCATCCTGCCTCTCCGATCGGTTGAGCGCTCGTAC
649 CACATCCTACCTCTCCGACCAGTTGAGCGCCCGTAC
* * ** *
31813276 GCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAAGCATACGGAGTTCAT
1 GCTCGTTTCATGGGTTGACTTAGGCATACATAGTTCATCCCCA-GTCTAAGCATACGGAGTTCAT
* * *
31813340 TCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGATAGCAGGACGAGCAGCAGGATTGACAGCA
65 TCCCAGTCTAAGATCGGATCGGACCGAGGG-T----T------ACG-GCAGCAGGATCGACAGCA
* * * ***
31813405 CGCAGGGGGGACCGGGCCGATCTTCGGCTTGCTCATTCTGCCTCTCCGGTAGGCTGAGCGCCCGC
118 CGCAGGGGGGACTGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCAACT-GGCTGAGCGCCCGC
* * * * * *
31813470 ACGTCTGTTGCATGGGTTGGCTTAGACATAGGGTGTTCATTCCATGTCTAAGCCCCAGCTGGACC
182 ACGCCTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACTGGACA
* * * * * *
31813535 GAGGGTTGTGGCAGCGGGACTGGCAGCACGCAAAGGGGGACCGGGCC-GATCCCCGGCTTACACA
247 GAGGGTTGTGGCAACGGGACCGGCAGCACGCAGAGGGGGACCGGGCCAG-T-CTCGGCTTGCGCA
* * * * * ** *
31813599 TTATGCCTCTTCAGCCGGCTCAATGCCCGCACACGCATTTTGTGGGTTGACTTATGCATACGGAG
310 TTATGCCTCTCCAGCCGACTCAATGCCCGAACGCTCATTTCATGGGTTGACTTAGGCATACGGAG
* ** **
31813664 TTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGTGAAGGCAGGATCGGTAGCACATAGGG
375 TTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGTGAA-GCAGGATCGACAGCACGCAGGG
* * * * *
31813729 GGGACCGGG-CTGATCCCCGGCTTGCACATTCTGCCTCTTCGATCGGCTGAGCGCCCGCACGCTC
439 GGGATCGGGTC-GATCCCCGGCTTGCGCATTCTGCCTCTACGACCGGCTGAGCACCCGCACGCTC
** *
31813793 GTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTTTAAGCATACGGAGTTCATTCCCA
503 GTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATG-TTAAGCATACAGAGTTCATTCCCA
31813858 GTG
567 GTG
31813861 TAAAATTTTG
Statistics
Matches: 1037, Mismatches: 173, Indels: 87
0.80 0.13 0.07
Matches are distributed among these distances:
669 40 0.04
670 129 0.12
671 3 0.00
674 1 0.00
675 5 0.00
680 1 0.00
681 8 0.01
682 260 0.25
683 107 0.10
684 3 0.00
685 1 0.00
687 2 0.00
688 2 0.00
689 1 0.00
690 1 0.00
691 1 0.00
692 2 0.00
694 1 0.00
695 3 0.00
696 96 0.09
697 48 0.05
698 311 0.30
699 10 0.01
700 1 0.00
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (684 bp):
GCTCGTTTCATGGGTTGACTTAGGCATACATAGTTCATCCCCAGTCTAAGCATACGGAGTTCATT
CCCAGTCTAAGATCGGATCGGACCGAGGGTTACGGCAGCAGGATCGACAGCACGCAGGGGGGACT
GGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCAACTGGCTGAGCGCCCGCACGCCTGTTTCATG
GGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACTGGACAGAGGGTTGTGGCAA
CGGGACCGGCAGCACGCAGAGGGGGACCGGGCCAGTCTCGGCTTGCGCATTATGCCTCTCCAGCC
GACTCAATGCCCGAACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
GATCAGATCGGACCGAGGGTTGTGAAGCAGGATCGACAGCACGCAGGGGGGATCGGGTCGATCCC
CGGCTTGCGCATTCTGCCTCTACGACCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTA
GGCATACGGAGTTCATTCCATGTTAAGCATACAGAGTTCATTCCCAGTGATCGGATCAAGGGTTG
CCATAGCAGGACCAGCAGCAGAATCGACAGCACGCAGAAAGGACCGAGCCGATCCCCGACTTGCA
CATCCTACCTCTCCGACCAGTTGAGCGCCCGTAC
Found at i:31813328 original size:26 final size:26
Alignment explanation
Indices: 31813299--31813351 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
31813289 GTTGGCTTAG
31813299 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
31813325 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
31813351 G
1 G
31813352 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:31813465 original size:196 final size:196
Alignment explanation
Indices: 31813129--31813522 Score: 488
Period size: 196 Copynumber: 2.0 Consensus size: 196
31813119 GTTACCTTAG
* * * *
31813129 GCATACGGAGTTCATTCCATGTCTAAGATTGGATCGGATCAAGGGTTGCCATAGCAGGACCAGCA
1 GCATACGGAGTTCATTCCATGTCTAAGATCGGACCAGACCAAGGGTTGCCATAGCAGGACCAGCA
* * *
31813194 GCAGCATCGGCAGCATGTAGGAGGGACCGAGCCGATCCCTGACTTGCGCATCCTGCCTCTCCGAT
66 GCAGCATCGACAGCACGCAGGAGGGACCGAGCCGATCCCTGACTTGCGCATCCTGCCTCTCCGAT
* * * * * * *
31813259 CGGTTGAGCGCTCGTACG-CTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
131 AGGCTGAGCGCCCGCACGTCT-GTTGCATGGGTTGGCTTAGACATACGGAGTTCATTCCATGTCT
31813323 AA
195 AA
* * *
31813325 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGACCAGACCGAGGGTTGCGATAGCAGGACGAGC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCGGACCAGACCAAGGGTTGCCATAGCAGGACCAGC
* * * * * * * *
31813389 AGCAGGATTGACAGCACGCAGGGGGGACCGGGCCGAT-CTTCGGCTTGCTCATTCTGCCTCTCCG
65 AGCAGCATCGACAGCACGCAGGAGGGACCGAGCCGATCCCT-GACTTGCGCATCCTGCCTCTCCG
* * *
31813453 GTAGGCTGAGCGCCCGCACGTCTGTTGCATGGGTTGGCTTAGACATAGGGTGTTCATTCCATGTC
129 ATAGGCTGAGCGCCCGCACGTCTGTTGCATGGGTTGGCTTAGACATACGGAGTTCATTCCATGTC
31813518 TAA
194 TAA
31813521 GC
1 GC
31813523 CCCAGCTGGA
Statistics
Matches: 167, Mismatches: 28, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
195 2 0.01
196 160 0.96
197 5 0.03
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.23
Consensus pattern (196 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCGGACCAGACCAAGGGTTGCCATAGCAGGACCAGCA
GCAGCATCGACAGCACGCAGGAGGGACCGAGCCGATCCCTGACTTGCGCATCCTGCCTCTCCGAT
AGGCTGAGCGCCCGCACGTCTGTTGCATGGGTTGGCTTAGACATACGGAGTTCATTCCATGTCTA
A
Found at i:31813606 original size:682 final size:671
Alignment explanation
Indices: 31812459--31813838 Score: 1590
Period size: 682 Copynumber: 2.0 Consensus size: 671
31812449 CCATGTCTAA
* *
31812459 GCATACAGAGTTCATTCCCA-GTCTAAGATCGGACCAGATCGAGGGTTGCAGTAGCAGGACCAGC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCGGACCAGATCAAGGGTTGCAGTAGCAGGACCAGC
* * * * * *
31812523 AGCAGAATCGACAGCACGCAGAAAAGGACCGGGCTGATCCCCGGCTTGCACTTTCTATCTCTCCG
65 AGCAGAATCGACAGCACGCAGAAAAGGACCGAGCCGATCCCCGACTTGCACATCCTACCTCTCCG
* * * *
31812588 ACCAGTTAGTGCCCGTACGCTCGTTTCATGGGTTTACTTAGGCATACATAGTTCATCCCCAGTTT
130 ACCAGTTAGCGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCT
** * *
31812653 AAGCATACAGAGTTCATTCCCAGTCTAAGATCGGGTCGGACCGAGGGTTACGGCAGTAGGATCAA
195 AAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCAGGATCAA
* *
31812718 CAGCACGCAGGGGAGACTGGGCCGATCCCCGACTTGCGCATTCTGCCTTTTCAACTGGCTGAGCG
260 CAGCACGCAGGGGAGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTTCTCAACTGGCTGAGCG
* * * *
31812783 CCCGCATGCCTGTTTCGCGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGACTAAACCCCAACT
325 CCCGCACGCCTGTTGCACGGGTTGGCTTAGACATAGGGAGTTCATTCCATGACTAAACCCCAACT
* * ** *
31812848 GGACTGAGGGTTGTGGCAACGGGACCGGCAGCACGCAGAGGGGGACCGAGCCAGTCTTCGGCTTG
390 GGACCGAGGGTTGTGGCAACGGGACCGGCAGCACGCAAAGGGGGACCGAGCCAGTCCCCGGCTTA
** ** * * *
31812913 TGCATTATGCCTCTCCAACCGACTCAACGCCCGGGCGCTCGTTTCATGGGTTGACTTAGGCATAC
455 CACATTATGCCTCTCCAACCGACTCAACGCCCGCACACGCATTTCATGGGTTGACTTAGGCATAC
* * * * *
31812978 GGAGTTTATTCCCAATCTAAGATCGGATCGGA-CTGAGGGTTGTG-GGGTAGGATCGACAGCACG
520 GGAGTTCATTCCCAATCTAAGATCAGATCGGATC-GAGGGTTGTGAAGGCAGGATCGACAGCACA
* *
31813041 CAAGGGGGATCGGG-TCGATCCCCGGCTTGCGCATTCTACCTCTACGACCGACTGAGCACCCGCA
584 CAAGGGGGACCGGGCT-GATCCCCGGCTTGCACATTCTACCTCTACGACCGACTGAGCACCCGCA
31813105 CGCTCATTTCATGGGTTACCTTAG
648 CGCTCATTTCATGGGTTACCTTAG
* * *
31813129 GCATACGGAGTTCATTCCATGTCTAAGATTGGATCGGATCAAGGGTTGCCA-TAGCAGGACCAGC
1 GCATACGGAGTTCATTCCATGTCTAAGATCGGACCAGATCAAGGGTTG-CAGTAGCAGGACCAGC
* * * * * * * * *
31813193 AGCAGCATCGGCAGCATGTAG-GAGGGACCGAGCCGATCCCTGACTTGCGCATCCTGCCTCTCCG
65 AGCAGAATCGACAGCACGCAGAAAAGGACCGAGCCGATCCCCGACTTGCACATCCTACCTCTCCG
* * * * * * *
31813257 ATCGGTTGAGCGCTCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGT
130 ACCAGTT-AGCGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCA-GT
*
31813321 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGATAGCAGGACG
193 CTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGG-T----T------ACG
** * ** * *
31813386 AGCAGCAGGATTGACAGCACGCAGGGGGGACCGGGCCGATCTTCGGCTTGCTCATTCTGCC-TCT
247 -GCAGCAGGATCAACAGCACGCAGGGGAGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTTCT
*** * * *
31813450 CCGGTAGGCTGAGCGCCCGCACGTCTGTTGCATGGGTTGGCTTAGACATAGGGTGTTCATTCCAT
311 CAACT-GGCTGAGCGCCCGCACGCCTGTTGCACGGGTTGGCTTAGACATAGGGAGTTCATTCCAT
* * * * * *
31813515 GTCTAAGCCCCAGCTGGACCGAGGGTTGTGGCAGCGGGACTGGCAGCACGCAAAGGGGGACCGGG
375 GACTAAACCCCAACTGGACCGAGGGTTGTGGCAACGGGACCGGCAGCACGCAAAGGGGGACCGAG
* * * * **
31813580 CC-GATCCCCGGCTTACACATTATGCCTCTTCAGCCGGCTCAATGCCCGCACACGCATTTTGTGG
440 CCAG-TCCCCGGCTTACACATTATGCCTCTCCAACCGACTCAACGCCCGCACACGCATTTCATGG
* *
31813644 GTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGTGAAGGC
504 GTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGATCGGATCGAGGGTTGTGAAGGC
** * * * * *
31813709 AGGATCGGTAGCACATAGGGGGGACCGGGCTGATCCCCGGCTTGCACATTCTGCCTCTTCGATCG
569 AGGATCGACAGCACACAAGGGGGACCGGGCTGATCCCCGGCTTGCACATTCTACCTCTACGACCG
* * * ** **
31813774 GCTGAGCGCCCGCACGCTCGTTTTGTGGGTTGGCTTAG
634 ACTGAGCACCCGCACGCTCATTTCATGGGTTACCTTAG
*
31813812 GCATACGGAGTTCATTCCATGTTTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
31813839 CATACGGAGT
Statistics
Matches: 586, Mismatches: 103, Indels: 29
0.82 0.14 0.04
Matches are distributed among these distances:
669 43 0.07
670 157 0.27
671 3 0.01
675 1 0.00
681 8 0.01
682 260 0.44
683 113 0.19
684 1 0.00
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.23
Consensus pattern (671 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCGGACCAGATCAAGGGTTGCAGTAGCAGGACCAGCA
GCAGAATCGACAGCACGCAGAAAAGGACCGAGCCGATCCCCGACTTGCACATCCTACCTCTCCGA
CCAGTTAGCGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTA
AGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCAGGATCAAC
AGCACGCAGGGGAGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTTCTCAACTGGCTGAGCGC
CCGCACGCCTGTTGCACGGGTTGGCTTAGACATAGGGAGTTCATTCCATGACTAAACCCCAACTG
GACCGAGGGTTGTGGCAACGGGACCGGCAGCACGCAAAGGGGGACCGAGCCAGTCCCCGGCTTAC
ACATTATGCCTCTCCAACCGACTCAACGCCCGCACACGCATTTCATGGGTTGACTTAGGCATACG
GAGTTCATTCCCAATCTAAGATCAGATCGGATCGAGGGTTGTGAAGGCAGGATCGACAGCACACA
AGGGGGACCGGGCTGATCCCCGGCTTGCACATTCTACCTCTACGACCGACTGAGCACCCGCACGC
TCATTTCATGGGTTACCTTAG
Found at i:31814572 original size:26 final size:26
Alignment explanation
Indices: 31814536--31814588 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
31814526 GTTGACTTAG
*
31814536 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
31814562 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
31814588 G
1 G
31814589 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:31815035 original size:158 final size:156
Alignment explanation
Indices: 31814562--31815062 Score: 499
Period size: 159 Copynumber: 3.2 Consensus size: 156
31814552 CCCAGTCTAA
* * * *
31814562 GCATACGGAGTTCATTCCCA-ATCTAAGATCGGACCAGACCGCGGGTTGC-GCAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAG-AGGATCAAC
* * *
31814625 AGCACGCAAGGGGGACCAGGGCGATCCCCGACTTGCGCATTCTACCTCTTCAGCCGGTTGAGAGC
64 AGCACGCAGGGGGGACC-GGGCGATCCCCGACTTGCGCATTCTGCCTCTCCAGCCGGTTGAGAGC
*
31814690 CCGCACACCCGTTTCATGGGTTGGCTTAG
128 CCGCACGCCCGTTTCATGGGTTGGCTTAG
* ** ** * * * *
31814719 GCATAGGGAGTTCATTCCATGTCTAAGCCCTAG-CTGGATCGAGGGTTGTGGCAGCGAGA-CAGG
1 GCATACGGAGTTCATTCCATGTCTAAGATC-AGACCAGACCGAGGGTTGCGGCAGAG-GATCA-A
* * * * * * * * *
31814782 CATCATGCAGTGGGGGATCGGGCTGATCCCCGACTTGCGCATTATGCCTCTCTAGCCAGCTCAGT
63 CAGCACGCAG-GGGGGACCGGGC-GATCCCCGACTTGCGCATTCTGCCTCTCCAGCCGGTTGAGA
* * * *
31814847 GCCCGCACGCTCATTTTATGGGTTGACTTAG
126 GCCCGCACGCCCGTTTCATGGGTTGGCTTAG
*
31814878 GCATACGGTGTTCATTCC-TAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGTAGGATCAAC
1 GCATACGGAGTTCATTCCAT-GTCTAAGATCAGACCAGACCGAGGGTTGCGGCAG-AGGATCAAC
* * * ** * *
31814942 AGCACGTAGGGGGGACCGGGTCGATCCCTGGCTTATGCATTCTGCCTCTCCAACCGGTTGAGCGC
64 AGCACGCAGGGGGGACCGGG-CGATCCCCGACTTGCGCATTCTGCCTCTCCAGCCGGTTGAGAGC
* * *
31815007 CCGCACGCGCGTTTCGTTGGTTGGCTTAG
128 CCGCACGCCCGTTTCATGGGTTGGCTTAG
31815036 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
31815063 CATACGGAGT
Statistics
Matches: 269, Mismatches: 62, Indels: 25
0.76 0.17 0.07
Matches are distributed among these distances:
156 3 0.01
157 35 0.13
158 110 0.41
159 118 0.44
160 3 0.01
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.23
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGAGGATCAACAG
CACGCAGGGGGGACCGGGCGATCCCCGACTTGCGCATTCTGCCTCTCCAGCCGGTTGAGAGCCCG
CACGCCCGTTTCATGGGTTGGCTTAG
Found at i:31815072 original size:26 final size:26
Alignment explanation
Indices: 31815036--31815088 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
31815026 GTTGGCTTAG
31815036 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
31815062 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
31815088 G
1 G
31815089 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:31815190 original size:184 final size:184
Alignment explanation
Indices: 31814878--31815247 Score: 535
Period size: 184 Copynumber: 2.0 Consensus size: 184
31814868 GTTGACTTAG
* * * *
31814878 GCATACGGTGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGTAGGATCAACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAAGATCAACA
* * * * * *
31814943 GCACGTAGGGGGGACCGGGTCGATCCCTGGCTTATGCATTCTGCCTCTCCAACCGGTTGAGCGCC
66 GCACGCAGGGGGGACCGGGCCGATCCCTGACTTACGCATTCTACCTCTCCAACCGGCTGAGCGCC
* *
31815008 CGCACGCGCGTTTCGTTGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
131 CGCACGCGCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
*
31815062 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAAGATCGAA-
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAAGATC-AAC
* * * *
31815126 AGCATGCAGGGGGGATCGGGCCGATCCCTGACTTACGCATTCTACCTCTCCGATCGGCTGAGCGC
65 AGCACGCAGGGGGGACCGGGCCGATCCCTGACTTACGCATTCTACCTCTCCAACCGGCTGAGCGC
* * * *
31815191 CCGTACGCTCGTTTCATGGGTTGGCTTTGGCATACGGAGTTCATTCTATGTCTAA
130 CCGCACGCGCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
31815246 GC
1 GC
31815248 CCTAGCCAGA
Statistics
Matches: 164, Mismatches: 21, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
184 162 0.99
185 2 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (184 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAAGATCAACA
GCACGCAGGGGGGACCGGGCCGATCCCTGACTTACGCATTCTACCTCTCCAACCGGCTGAGCGCC
CGCACGCGCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
Found at i:31815600 original size:26 final size:26
Alignment explanation
Indices: 31815550--31815602 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
31815540 GTTGGCTTAG
* *
31815550 GCATACGGAGTTCATCCCATTTCTAA
1 GCATACGAAGTTCATCCCATGTCTAA
31815576 GCATACGAAGTTCATTCCCA-GTCTAA
1 GCATACGAAGTTCA-TCCCATGTCTAA
31815602 G
1 G
31815603 ATCAGACTTG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCATGTCTAA
Found at i:31815854 original size:514 final size:499
Alignment explanation
Indices: 31814525--31815934 Score: 1499
Period size: 514 Copynumber: 2.8 Consensus size: 499
31814515 TCCTTTCGTG
* * *
31814525 GGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGCATACGGAGTTCATTCCCAATCTAAG
1 GGTTGGCTTAGGCATACGGAGTTCAT-CCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAG
* * * * * * *
31814589 ATCGGACCAGACCGCGGGTTGC-GCAGCAGGATCGACAGCACGCAAGGGGGACC-AGGGCGATCC
65 ATCAGACCGGACCGAGGGTTGCGGCAGCAAGATCGAAAGCACGCAGGGGGGACCGA-GCCGATCC
* * * * * * * * * *
31814652 CCGACTTGCGCATTCTACCTCTTC-AGCCGGTTGAGAGCCCGCACACCCGTTTCATGGGTTGGCT
129 CCCACTTACACATTCTACCTCTCCGA-TCGGCTGAGCGCCCG-ACGCTCATTTCATGGGTTGGCT
** * * *
31814716 TAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCTGGATCGAGGGTTGTGGCAGCGAGACAG
192 TAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCAGATCGAGGGTTGTGGCAGTGGGACCG
* * * * * *
31814781 GCA-TCATGCAGTGGGGGATCGGGCTGATCCCCGACTTGCGCATTATGCCTCTCTAGCCAGCTCA
257 ACAGT-ACGCAGAGGGGGACCGGGCTGATCCCCG-CTTGCACATTATGCCTCTCCAGCCAGCTCA
* * * * *
31814845 GTGCCCGCACGCTCATTTTATGGGTTGACTTAGGCATACGGTGTTCATTCCTAGTCTAAGATCAG
320 GTGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAA
* ** * * * *
31814910 ACCAGACCGAGGGTTGCGGCAGTAGGATCAACAGCACGTAGGGGGGACCGGGTCGATCCCTGGCT
385 ACCAGACCGAGGGTTGCGGCAGCAGGATCAACAGCACCCAGAGGGGACCGGGTCAATCCCCGACT
*
31814975 TATGCATTCTGCCTCTCCAACCGGTTGAGCGCCCGCACGCGCGTTTCGTT
450 TATGCATTCTGCCTCTCCAACCGGTTGAGCGCCCGCACGCGCGTTTCATT
* *
31815025 GGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
1 GGTTGGCTTAGGCATACGGAGTTCATCCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGA
* * * *
31815090 TCAGACCGGACCGAGGGTTGCGGCAGCAAGATCGAAAGCATGCAGGGGGGATCGGGCCGATCCCT
66 TCAGACCGGACCGAGGGTTGCGGCAGCAAGATCGAAAGCACGCAGGGGGGACCGAGCCGATCCCC
* * * *
31815155 GACTTACGCATTCTACCTCTCCGATCGGCTGAGCGCCCGTACGCTCGTTTCATGGGTTGGCTTTG
131 CACTTACACATTCTACCTCTCCGATCGGCTGAGCGCCCG-ACGCTCATTTCATGGGTTGGCTTAG
* * * *
31815220 GCATACGGAGTTCATTCTATGTCTAAGCCCTAGCCAGATTGAGGGTTGTGGCAGTAGGACCGACA
195 GCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCAGATCGAGGGTTGTGGCAGTGGGACCG--A
* * * *
31815285 GCGGGATCGATAGCATCCAGAGGGGGACTGGGCTGATCCTCGGCTTGCACATTATGCCTCTCCGG
258 -C---A--G-TA-C--GCAGAGGGGGACCGGGCTGATCC-CCGCTTGCACATTATGCCTCTCCAG
* * * * *
31815350 CCAGCTGAGTGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCT
312 CCAGCTCAGTGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
** * * * *
31815415 AAGATCAAACTGGATCGAGGGTTGCGGTAGCAGGATCAATAGCACACCAGAGGGGACTGGGTCAA
377 AAGATCAAACCAGACCGAGGGTTGCGGCAGCAGGATCAACAGCAC-CCAGAGGGGACCGGGTCAA
** * * * *
31815480 TCCCCGACTTATGCATTCTGCCTCTCTGATCGGTTGAGCGCCCGTACTCTCGTTTCA-T
441 TCCCCGACTTATGCATTCTGCCTCTCCAACCGGTTGAGCGCCCGCACGCGCGTTTCATT
*
31815538 GTGTTGGCTTAGGCATACGGAGTTCATCCCATTTCTAAGCATACGAAGTTCATTCCCAGTCTAAG
1 G-GTTGGCTTAGGCATACGGAGTTCATCCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAG
** *
31815603 ATCAGACTTGACCGAGGGTTGCGGCAGCAGGACCAGTAGCAGGATCGACAGCACGCAGGGGGGAC
65 ATCAGACCGGACCGAGGGTTGC-G--GCA-G--C---A--A-GATCGAAAGCACGCAGGGGGGAC
** * *
31815668 CGAGTTGATCCCCCAGTTACACATTCTGCCTCTCCGA-CTGGCTGAGCGACCACG-CGC-CAATT
118 CGAGCCGATCCCCCACTTACACATTCTACCTCTCCGATC-GGCTGAGCG-CC-CGACGCTC-ATT
* * *
31815730 TCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTAT
179 TCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCAGATCGAGGGTTGT
* * *
31815795 GGCAGTGGGACCGACAGTACGCAGAGAGGGACC-GGATCGATCCCCAGCTTGCCCATTATGCCTC
244 GGCAGTGGGACCGACAGTACGCAGAGGGGGACCGGGCT-GATCCCC-GCTTGCACATTATGCCTC
* * ** * *
31815859 TTCAGCTAGCTCAACGCCCGCACGCTTGTTTCATGGGTTGACTTAAGCATACGGAGTTCATTCCC
307 TCCAGCCAGCTCAGTGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCC
31815924 AGTCTAAGATC
372 AGTCTAAGATC
31815935 GGATCGAACC
Statistics
Matches: 757, Mismatches: 115, Indels: 62
0.81 0.12 0.07
Matches are distributed among these distances:
499 3 0.00
500 76 0.10
501 141 0.19
502 1 0.00
504 1 0.00
507 1 0.00
510 1 0.00
511 1 0.00
513 138 0.18
514 240 0.32
515 1 0.00
516 1 0.00
517 5 0.01
518 2 0.00
520 2 0.00
523 2 0.00
524 1 0.00
525 3 0.00
526 133 0.18
527 2 0.00
528 2 0.00
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (499 bp):
GGTTGGCTTAGGCATACGGAGTTCATCCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGA
TCAGACCGGACCGAGGGTTGCGGCAGCAAGATCGAAAGCACGCAGGGGGGACCGAGCCGATCCCC
CACTTACACATTCTACCTCTCCGATCGGCTGAGCGCCCGACGCTCATTTCATGGGTTGGCTTAGG
CATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCAGATCGAGGGTTGTGGCAGTGGGACCGACAG
TACGCAGAGGGGGACCGGGCTGATCCCCGCTTGCACATTATGCCTCTCCAGCCAGCTCAGTGCCC
GCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGA
CCGAGGGTTGCGGCAGCAGGATCAACAGCACCCAGAGGGGACCGGGTCAATCCCCGACTTATGCA
TTCTGCCTCTCCAACCGGTTGAGCGCCCGCACGCGCGTTTCATT
Found at i:31815950 original size:514 final size:497
Alignment explanation
Indices: 31814525--31816101 Score: 1479
Period size: 514 Copynumber: 3.1 Consensus size: 497
31814515 TCCTTTCGTG
* * *
31814525 GGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGCATACGGAGTTCATTCCCAATCTAAG
1 GGTTGGCTTAGGCATACGGAGTTCAT-CCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAG
* * * * * * *
31814589 ATCGGACCAGACCGCGGGTTGC-GCAGCAGGATCGACAGCACGCAAGGGGGACC-AGGGCGATCC
65 ATCAGACCGGACCGAGGGTTGCGGCAGCAAGATCGAAAGCACGCAGGGGGGACCGA-GCCGATCC
* * * * * * * * * *
31814652 CCGACTTGCGCATTCTACCTCTTC-AGCCGGTTGAGAGCCCGCACACCCGTTTCATGGGTTGGCT
129 CCCACTTACACATTCTACCTCTCCGA-TCGGCTGAGCGCCCG-ACGCTCATTTCATGGGTTGGCT
** * * *
31814716 TAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCTGGATCGAGGGTTGTGGCAGCGAGACAG
192 TAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCAGATCGAGGGTTGTGGCAGTGGGACCG
* * * * *
31814781 GCA-TCATGCAGTGGGGGATCGGGCTGATCCCCGACTTGCGCATTATGCCTC-TCTAGCCAGCTC
257 ACAGT-ACGCAGAGGGGGACCGGGCTGATCCCCG-CTTGCACATTATGCCTCTTC-AGCCAGCTC
* * * *
31814844 AGTGCCCGCACGCTCATTTTATGGGTTGACTTAGGCATACGGTGTTCATTCCTAGTCTAAGATCA
319 AGTGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-
* * * ** * * * *
31814909 GACCAGACCGAGGGTTGCGGCAGTAGGATCAACAGCACGTAGGGGGGACCGGGTCGATCCCTGGC
383 GACGA-ACCGAGGGTTGCGGTAGCAGGATCAACAGCACCCAGAGGGGACCGGGTCAATCCCCGAC
*
31814974 TTATGCATTCTGCCTCTCCAACCGGTTGAGCGCCCGCACGCGCGTTTCGTT
447 TTATGCATTCTGCCTCTCCAACCGGTTGAGCGCCCGCACGCGCGTTTCATT
* *
31815025 GGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
1 GGTTGGCTTAGGCATACGGAGTTCATCCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGA
* * * *
31815090 TCAGACCGGACCGAGGGTTGCGGCAGCAAGATCGAAAGCATGCAGGGGGGATCGGGCCGATCCCT
66 TCAGACCGGACCGAGGGTTGCGGCAGCAAGATCGAAAGCACGCAGGGGGGACCGAGCCGATCCCC
* * * *
31815155 GACTTACGCATTCTACCTCTCCGATCGGCTGAGCGCCCGTACGCTCGTTTCATGGGTTGGCTTTG
131 CACTTACACATTCTACCTCTCCGATCGGCTGAGCGCCCG-ACGCTCATTTCATGGGTTGGCTTAG
* * * *
31815220 GCATACGGAGTTCATTCTATGTCTAAGCCCTAGCCAGATTGAGGGTTGTGGCAGTAGGACCGACA
195 GCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCAGATCGAGGGTTGTGGCAGTGGGACCG--A
* * * * *
31815285 GCGGGATCGATAGCATCCAGAGGGGGACTGGGCTGATCCTCGGCTTGCACATTATGCCTCTCCGG
258 -C---A--G-TA-C--GCAGAGGGGGACCGGGCTGATCC-CCGCTTGCACATTATGCCTCTTCAG
* * * * *
31815350 CCAGCTGAGTGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCT
312 CCAGCTCAGTGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
* * * * *
31815415 AAGATCAAACTGGATCGAGGGTTGCGGTAGCAGGATCAATAGCACACCAGAGGGGACTGGGTCAA
377 AAGATC-GAC-GAACCGAGGGTTGCGGTAGCAGGATCAACAGCAC-CCAGAGGGGACCGGGTCAA
** * * * *
31815480 TCCCCGACTTATGCATTCTGCCTCTCTGATCGGTTGAGCGCCCGTACTCTCGTTTCA-T
439 TCCCCGACTTATGCATTCTGCCTCTCCAACCGGTTGAGCGCCCGCACGCGCGTTTCATT
*
31815538 GTGTTGGCTTAGGCATACGGAGTTCATCCCATTTCTAAGCATACGAAGTTCATTCCCAGTCTAAG
1 G-GTTGGCTTAGGCATACGGAGTTCATCCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAG
** *
31815603 ATCAGACTTGACCGAGGGTTGCGGCAGCAGGACCAGTAGCAGGATCGACAGCACGCAGGGGGGAC
65 ATCAGACCGGACCGAGGGTTGC-G--GCA-G--C---A--A-GATCGAAAGCACGCAGGGGGGAC
** * *
31815668 CGAGTTGATCCCCCAGTTACACATTCTGCCTCTCCGA-CTGGCTGAGCGACCACG-CGC-CAATT
118 CGAGCCGATCCCCCACTTACACATTCTACCTCTCCGATC-GGCTGAGCG-CC-CGACGCTC-ATT
* * *
31815730 TCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTAT
179 TCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCAGATCGAGGGTTGT
* * *
31815795 GGCAGTGGGACCGACAGTACGCAGAGAGGGACC-GGATCGATCCCCAGCTTGCCCATTATGCCTC
244 GGCAGTGGGACCGACAGTACGCAGAGGGGGACCGGGCT-GATCCCC-GCTTGCACATTATGCCTC
* ** * *
31815859 TTCAGCTAGCTCAACGCCCGCACGCTTGTTTCATGGGTTGACTTAAGCATACGGAGTTCATTCCC
307 TTCAGCCAGCTCAGTGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCC
* * * *
31815924 AGTCTAAGATCGGATCGAACCGAGGGTTGTGATAGCAGGACCAGCAGCAGGATCGTCAGCAAGCA
372 AGTCTAAGATC-GA-CGAACCGAGGGTTGCGGTAGCAGGATCA--A-CAGCA-C--C--C-AG-A
* * * * ** * *
31815989 GGGGGGACCGGGTCGATCCTCGACTTACGCATT-TAGCCTCTCCAGCCGACTGAGCACCCGC-TG
425 --GGGGACCGGGTCAATCCCCGACTTATGCATTCT-GCCTCTCCAACCGGTTGAGCGCCCGCACG
* * *
31816052 CTCGTTTCGTG
487 CGCGTTTCATT
* * *
31816063 GGTTGGCTTAGCCATGCGGAGTTCATTCCATGTCTAAGC
1 GGTTGGCTTAGGCATACGGAGTTCATCCCATGTCTAAGC
31816102 CCCAGTCAGA
Statistics
Matches: 878, Mismatches: 145, Indels: 84
0.79 0.13 0.08
Matches are distributed among these distances:
499 3 0.00
500 76 0.09
501 141 0.16
502 1 0.00
504 1 0.00
507 1 0.00
510 1 0.00
511 1 0.00
513 135 0.15
514 264 0.30
515 2 0.00
516 2 0.00
517 8 0.01
518 3 0.00
519 1 0.00
520 2 0.00
521 1 0.00
522 2 0.00
523 3 0.00
524 44 0.05
525 49 0.06
526 133 0.15
527 2 0.00
528 2 0.00
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (497 bp):
GGTTGGCTTAGGCATACGGAGTTCATCCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGA
TCAGACCGGACCGAGGGTTGCGGCAGCAAGATCGAAAGCACGCAGGGGGGACCGAGCCGATCCCC
CACTTACACATTCTACCTCTCCGATCGGCTGAGCGCCCGACGCTCATTTCATGGGTTGGCTTAGG
CATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCAGATCGAGGGTTGTGGCAGTGGGACCGACAG
TACGCAGAGGGGGACCGGGCTGATCCCCGCTTGCACATTATGCCTCTTCAGCCAGCTCAGTGCCC
GCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGACGAACC
GAGGGTTGCGGTAGCAGGATCAACAGCACCCAGAGGGGACCGGGTCAATCCCCGACTTATGCATT
CTGCCTCTCCAACCGGTTGAGCGCCCGCACGCGCGTTTCATT
Found at i:31817788 original size:26 final size:26
Alignment explanation
Indices: 31817751--31817803 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
31817741 GTTGGCTTAG
31817751 GCATACGTAGTTAATT-CCATGTCTAA
1 GCATACGTAGTTAATTCCCA-GTCTAA
*
31817777 GCATACAG-AGTTCATTCCCAGTCTAA
1 GCATAC-GTAGTTAATTCCCAGTCTAA
31817803 G
1 G
31817804 ATCAGATTGG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGTAGTTAATTCCCAGTCTAA
Found at i:31818119 original size:171 final size:170
Alignment explanation
Indices: 31817809--31818132 Score: 427
Period size: 171 Copynumber: 1.9 Consensus size: 170
31817799 CTAAGATCAG
* *
31817809 ATTGGACCGATGGTTGCGATAGCAGGACCAGTAGCAGGATCGACAACACGCAGGGGGGACCGGTC
1 ATTGGACCGAGGGTTGCGACAGCAGGACCAGTAGCAGGATCGACAACACGCAGGGGGGACCGGTC
* * * * *
31817874 CAATCCCTGGCTTGTGCATTCTGCCTCTCCGGTCGGTTGAGCCACCGCACGTTGGTTTCATGGAT
66 CAATCCCCGGCTTGCGCATTATGCCTCTCCGGTCGGTTGAGCCACCGCACGCTCGTTTCATGGAT
* * *
31817939 TGGCTTAGGCATATGGAGTTCATTCCATGTCTAATCCCCA
131 TGACTTAGGCATACGAAGTTCATTCCATGTCTAATCCCCA
* * * * * *
31817979 ATTGGACCGAGGGTTGTGGCAGTAGGACCGGTAGCAGGATCGACAGCATGCAGAGGGGGACCAGG
1 ATTGGACCGAGGGTTGCGACAGCAGGACCAGTAGCAGGATCGACAACACGCAG-GGGGGACC-GG
* * *
31818044 -CTAATCCCCGGCTTGCGCATTATGCCTTTCCGGTCGGTTGAGCGC-CCGCACGCTCGTTTCGTG
64 TCCAATCCCCGGCTTGCGCATTATGCCTCTCCGGTCGGTTGAGC-CACCGCACGCTCGTTTCATG
*
31818107 GGTTGACTTAGGCATACGAAGTTCAT
128 GATTGACTTAGGCATACGAAGTTCAT
31818133 CCCCAGTCTA
Statistics
Matches: 131, Mismatches: 20, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
170 45 0.34
171 83 0.63
172 3 0.02
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (170 bp):
ATTGGACCGAGGGTTGCGACAGCAGGACCAGTAGCAGGATCGACAACACGCAGGGGGGACCGGTC
CAATCCCCGGCTTGCGCATTATGCCTCTCCGGTCGGTTGAGCCACCGCACGCTCGTTTCATGGAT
TGACTTAGGCATACGAAGTTCATTCCATGTCTAATCCCCA
Found at i:31818155 original size:26 final size:26
Alignment explanation
Indices: 31818115--31818168 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
31818105 TGGGTTGACT
*
31818115 TAGGCATACGAAGTTCATCCCCAGTC
1 TAGGCATACGAAGTTCATCCCCAATC
* *
31818141 TAGGCATACGGAGTTCATTCCCAATC
1 TAGGCATACGAAGTTCATCCCCAATC
31818167 TA
1 TA
31818169 AGATCAGACC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
TAGGCATACGAAGTTCATCCCCAATC
Found at i:31818656 original size:26 final size:26
Alignment explanation
Indices: 31818620--31818672 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31818610 GTTGGCTTAG
*
31818620 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTAATTCCCA-GTCTAA
31818646 GCATACGGAGTTAATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
31818672 G
1 G
31818673 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAGTCTAA
Found at i:31819880 original size:159 final size:157
Alignment explanation
Indices: 31819377--31819880 Score: 492
Period size: 160 Copynumber: 3.2 Consensus size: 157
31819367 CTCGATCTAA
* * * * * *
31819377 GCATACGGAGTTC-ATTCATAGTCTAAGATCGGTCCGGATCGAAGGTTGCGATAGTAGGATCGAC
1 GCATACGGAGTTCAATCCAT-GTCTAAGATCAGTCAGAAT-GAAGGTTGCGACACTAGGATCGAC
* * * * * * * *
31819441 AGCACGCAAGGGGGATTGGGCCGATCCCCTACTTGCACATTCTACCTCTTCGGCCGGCTGAGTGC
64 AGCACGCAGGGGGGATCGGGCCGATCCCCAACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGC
* *
31819506 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
129 CCGTACGCTCGTTTTGTGGGTTGGCTTAG
* * ** * * * * * *
31819535 GCATAGGGAGTTCATTCCATGTCTAAGCCCTAGTCGGATTGACGGTTGTGGCAGC-GGGATCGAC
1 GCATACGGAGTTCAATCCATGTCTAAGATC-AGTCAGAATGAAGGTTGCGACA-CTAGGATCGAC
**** * * *
31819599 AGCACGCAGAGGGGGATCGGGCCGATCCTTGGCTTGCGCATTATGCCTTTCCGACCGTGCTCAGC
64 AGCACGCAG-GGGGGATCGGGCCGATCCCCAACTTGCGCATTCTGCCTCTCCGACCG-GCTGAGC
* * * * *
31819664 GCCTGTACGCTCATTTTATTGGTTGACTTAG
127 GCCCGTACGCTCGTTTTGTGGGTTGGCTTAG
* * * * *
31819695 GCATATGAAGTTCATTCCCA-GTCTAAGATCAGATCAGAATGAGGGTTGCGACACTAGGATCGAT
1 GCATACGGAGTTCAAT-CCATGTCTAAGATCAG-TCAGAATGAAGGTTGCGACACTAGGATCGAC
* *
31819759 AGCACGTAGGGAGGGATCGGGCTGATCCCCAACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCG
64 AGCACGCAGGG-GGGATCGGGCCGATCCCCAACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCG
31819824 CCCGTACGCTCGTTTTGTGGGTTGGCTTAG
128 CCCGTACGCTCGTTTTGTGGGTTGGCTTAG
*
31819854 GCATACAGAGTTCAATCCATGTCTAAG
1 GCATACGGAGTTCAATCCATGTCTAAG
31819881 CATACAGAGT
Statistics
Matches: 271, Mismatches: 65, Indels: 19
0.76 0.18 0.05
Matches are distributed among these distances:
158 48 0.18
159 101 0.37
160 119 0.44
161 3 0.01
ACGTcount: A:0.20, C:0.25, G:0.30, T:0.25
Consensus pattern (157 bp):
GCATACGGAGTTCAATCCATGTCTAAGATCAGTCAGAATGAAGGTTGCGACACTAGGATCGACAG
CACGCAGGGGGGATCGGGCCGATCCCCAACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCC
GTACGCTCGTTTTGTGGGTTGGCTTAG
Found at i:31821647 original size:159 final size:159
Alignment explanation
Indices: 31821474--31821830 Score: 384
Period size: 158 Copynumber: 2.3 Consensus size: 159
31821464 CCGTTTTGTG
* * * * ** * *
31821474 GGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCGAAGCCCCAG-TCGGACTGAGGGTTGTGGTA
1 GGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAAACCGAGGGTTGTGATA
* * * * *
31821538 GCAGGACCGACAGCACGTAGAGGGGGATCGAGCCAAT-CCTAGGCTTGCACATTATGCCTCTCCG
66 GCAAGACCGACAACACGTAG-GGGGGACCGAGCCAATCCCT-GGCTTGCACAATATGCCGCTCCG
31821602 G-CTAGCTCAA-CGCCCACACGCTCATTTCATA
129 GCCTA-CT-AAGCGCCCACACGCTCATTTCATA
* *
31821633 GGTTGGCTTAGGCATACGGAGTTCATTCCCA-GTCTATG-ATCAGACCAAACCGAGGGTTGTGAT
1 GGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCAAACCGAGGGTTGTGAT
* * ** *
31821696 AGCAAGATCGACAACACGTAGGGGGGACCGGGCTGATCCCTGGCTTGCACAATCTGCCGCTCCGG
65 AGCAAGACCGACAACACGTAGGGGGGACCGAGCCAATCCCTGGCTTGCACAATATGCCGCTCCGG
* * * *
31821761 CCTACTAAGCGCCTACATGCTCATTTCGTG
130 CCTACTAAGCGCCCACACGCTCATTTCATA
* * *
31821791 GGTTGGCTTAGGCATATGGAGTGCTTTCCATGTCTAAGCA
1 GGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
31821831 TACCGAGTTC
Statistics
Matches: 163, Mismatches: 28, Indels: 14
0.80 0.14 0.07
Matches are distributed among these distances:
157 5 0.03
158 85 0.52
159 70 0.43
160 3 0.02
ACGTcount: A:0.22, C:0.26, G:0.29, T:0.24
Consensus pattern (159 bp):
GGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAAACCGAGGGTTGTGATA
GCAAGACCGACAACACGTAGGGGGGACCGAGCCAATCCCTGGCTTGCACAATATGCCGCTCCGGC
CTACTAAGCGCCCACACGCTCATTTCATA
Found at i:31823591 original size:26 final size:26
Alignment explanation
Indices: 31823552--31823604 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
31823542 GTTGGCTTAG
*
31823552 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
31823578 GCATACGAATTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
31823604 G
1 G
31823605 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:31834115 original size:159 final size:158
Alignment explanation
Indices: 31833722--31834115 Score: 458
Period size: 159 Copynumber: 2.5 Consensus size: 158
31833712 CAGTTGAGCG
* *
31833722 CCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGA
1 CCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCTCAG-
* * *
31833785 TCGGATCGAGGGTTGCGGCAACAGGATCGACAGCATGCAAGGGGGACCGGGCCAATCCCCGGCTT
64 TCGGATCGAGGGTTGCGGCAACAGGATCGACAGCACGCAAAGGGGAACGGGCCAATCCCCGGCTT
* *
31833850 GTGCATTCTACCTCTTCGATCGGCTAAGCA
129 GCGCATTATACCTCTTCGATCGGCTAAGCA
* * * * *
31833880 CCCGCACGC-CAGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTGAGCCCCAGT
1 CCCGCACGCTCA-TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCTCAGT
* * * * * * *
31833944 CGGACCGAGGGTTGTGGCAGC-GAGATCGGCAGCACGCAGAAGGGGAACGGGTCGATCCTCGGCT
65 CGGATCGAGGGTTGCGGCAACAG-GATCGACAGCACGCA-AAGGGGAACGGGCCAATCCCCGGCT
* * *
31834008 TGCGCATTATGCCTCTTCG-GCTGGCTCAGCA
128 TGCGCATTATACCTCTTCGATC-GGCTAAGCA
* *
31834039 CCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCATGTCTAAGCCTCAG-C
1 CCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCTCAGTC
*
31834103 TTGATCGAGGGTT
66 -GGATCGAGGGTT
31834116 TTGACAATAG
Statistics
Matches: 197, Mismatches: 31, Indels: 15
0.81 0.13 0.06
Matches are distributed among these distances:
157 6 0.03
158 79 0.40
159 110 0.56
160 2 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (158 bp):
CCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCTCAGTC
GGATCGAGGGTTGCGGCAACAGGATCGACAGCACGCAAAGGGGAACGGGCCAATCCCCGGCTTGC
GCATTATACCTCTTCGATCGGCTAAGCA
Found at i:31834283 original size:26 final size:26
Alignment explanation
Indices: 31834253--31834305 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
31834243 GTTGACTTAG
*
31834253 GCATACGTAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
31834279 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
31834305 G
1 G
31834306 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:31834807 original size:525 final size:526
Alignment explanation
Indices: 31833752--31834871 Score: 1613
Period size: 525 Copynumber: 2.1 Consensus size: 526
31833742 GTTGACTTAG
* * *
31833752 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCGGCAACAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCAGGATCGACA
* * *
31833817 GCATGCAAGGGGGACCGGGCCAATCCCCGGCTTGTGCATTCTACCTCTTCGATCGGCTAAGCACC
66 GCACGCAAGGGGGACCAGGCCAATCCCCAGCTTGTGCATTCTACCTCTTCGATCGGCTAAGCACC
* * * *
31833882 CGCACGCCAGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTGAGCCCCAGTCGG
131 CGCACGCCAATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAG
* * * * *
31833947 ACCGAGGGTTGTGGCAGCGAGATCGGCAGCACGCAGAAGGGGAACGGGTCGATCCTCGGCTTGCG
196 ACCGAGGGTTGTAGCAACGAGATCGACAGCACGCAG-AGGGGAACGGGTCGATCCCCGGCTTACG
* *
31834012 CATTATGCCTCTTCGGCTGGCTCAGCACCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAG
260 CATTATGCCTCTCCGGCTGGCTCAGCACCCGCACACTCATTTCATGGGTTGACTTAGGCATACAG
* * * * *
31834077 AGTTCATTCCATGTCTAAGCCTCAGCTTGATCGAGGGTTTTGACAATAGTACCGGCAACGGGATC
325 AGTTCATTCCATGTCTAAGCCCCAGCCTAACCGAGGGTTTTGACAATAGGACCGGCAACGGGATC
* * * *
31834142 GGCAGCACGCAGAGGGGGATCGGGCTAATCCCTGGCTTGCGCATTATGCCTCTCCTGTCGGCCTC
390 GACAGCACGCAGAGGGGGACCGAGCTAATCCCTGGCTTACGCATTATGCCTCTCCTGTCGGCCTC
* * * *
31834207 TCCGGCTGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGTAGTTCATCCCC
455 TCCGGCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATCCAC
*
31834272 AGTCTAA
520 AATCTAA
* * * *
31834279 GCATACGGAGTTCATTCTCAGTCTAAGATCGGACCGGATCGAGGGTTGCGACAGTAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCAGGATCGACA
* *
31834344 GCACGCAGGGGGGATCAGGCCAATCCCCAGCTTGTGCATTCTACCTCTTCGA-CTGGCTAAGCAC
66 GCACGCAAGGGGGACCAGGCCAATCCCCAGCTTGTGCATTCTACCTCTTCGATC-GGCTAAGCAC
*
31834408 CCGCACGCCAATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGTCA
130 CCGCACGCCAATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCA
*
31834473 GACCGAGGGTTGTAGCAAC-AGGATCGACAGCACGCAG-GGGGACCGGGTCGATCCCCGGCTTAC
195 GACCGAGGGTTGTAGCAACGA-GATCGACAGCACGCAGAGGGGAACGGGTCGATCCCCGGCTTAC
* * * * * * *
31834536 GCATTCTGCCTCTCCGG-TGGATTGAGCGCCTGCACACTCGTTTCGTGGGTT-AGCTTAGGCATA
259 GCATTATGCCTCTCCGGCTGG-CTCAGCACCCGCACACTCATTTCATGGGTTGA-CTTAGGCATA
* * *
31834599 CGGAGTTCATTCCATGTCTAAGCCCCAGCCTAACCGAGGGTTTTGACAATAGGACTGGCAGCGGG
322 CAGAGTTCATTCCATGTCTAAGCCCCAGCCTAACCGAGGGTTTTGACAATAGGACCGGCAACGGG
* * *
31834664 ATTGACAGCACGTAGAGGGGGACCGAGCTGAT-CCTCGGCTTACGCATTATGCCTCTCCTGTCGG
387 ATCGACAGCACGCAGAGGGGGACCGAGCTAATCCCT-GGCTTACGCATTATGCCTCTCCTGTCGG
* * *
31834728 CCTCTTCGGCCGGCTGAGCACCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCAT
451 CCTCTCCGGCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCAT
31834793 CCACAATCTAA
516 CCACAATCTAA
* * * *
31834804 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCAGGATCGACA
31834869 GCA
66 GCA
31834872 TGCTAGGCTT
Statistics
Matches: 525, Mismatches: 63, Indels: 12
0.88 0.10 0.02
Matches are distributed among these distances:
524 7 0.01
525 309 0.59
526 2 0.00
527 207 0.39
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (526 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCAGGATCGACA
GCACGCAAGGGGGACCAGGCCAATCCCCAGCTTGTGCATTCTACCTCTTCGATCGGCTAAGCACC
CGCACGCCAATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAG
ACCGAGGGTTGTAGCAACGAGATCGACAGCACGCAGAGGGGAACGGGTCGATCCCCGGCTTACGC
ATTATGCCTCTCCGGCTGGCTCAGCACCCGCACACTCATTTCATGGGTTGACTTAGGCATACAGA
GTTCATTCCATGTCTAAGCCCCAGCCTAACCGAGGGTTTTGACAATAGGACCGGCAACGGGATCG
ACAGCACGCAGAGGGGGACCGAGCTAATCCCTGGCTTACGCATTATGCCTCTCCTGTCGGCCTCT
CCGGCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATCCACA
ATCTAA
Found at i:31836037 original size:26 final size:26
Alignment explanation
Indices: 31835985--31836037 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
31835975 GTTGGCTTAG
* *
31835985 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCAGGTATAA
*
31836011 GCATATGGAGTTCATTCTC-GGTATAA
1 GCATACGGAGTTCATTC-CAGGTATAA
31836037 G
1 G
31836038 ATCGGATCAG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAGGTATAA
Found at i:31836708 original size:343 final size:344
Alignment explanation
Indices: 31835727--31837052 Score: 1120
Period size: 355 Copynumber: 3.8 Consensus size: 344
31835717 CAGCGGGACT
* * * * * * * * *
31835727 GGCAGCACGCAGAGGGGGACTG-GGCCAATCCTCAGCTTACGCATTATGCCTCTCCGGTCGGCTC
1 GGCAGCACGCAG-GGGGGACCGAGGTCGATCCTCGGCTTACGCATTCTACCTCTTCGGCCGGCTG
* * * * * * * * *
31835791 AACGCCCACACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-ATCTAAGATC
65 AGCACCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAG-CC
* * ** ** * * * *
31835855 AAATCAGACCGAGGGTTGTGGCAGCAAGATTGACAGCACGTA-AGGGGGGACCAGGCTGAT-CCT
128 CAATCGGACCGAGGGTTGTGGCAGCGGGACCGGCAGCACGCAGA-GGGGGACCGGGTTGATCCCT
** * * * * * * * *
31835918 CGGCTTGCCACATTCTACCT-TTCCGACTGGTTGAGCGCCCGTATGCTCGTTTCATGGGTTGGCT
192 -GGCTTG-TGCATTATGCCTCTTCAG-TTGGCTCAGCGCCCGAATGCTCGTTTCATGGGTTGACT
* * * * * *
31835982 TAGGCATACGGAGTTCATTCCATGTCTAAGCATATGGAGTTCATTCTCGGTATAAGATCGGATCA
254 TAGGCATACGGAGTTCATTCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGATCG
* *
31836047 GACCGAGGGTTGC-AGCAGCAGGATC
319 GACCGAGGGTTGCGACCAACAGGATC
* * ** * * *
31836072 GGCAGCACGCA-GGGGGACC-AGGTCGATCCTCAGTTTGTGCATTCTACCTCTTTGGCCGGTTAA
1 GGCAGCACGCAGGGGGGACCGAGGTCGATCCTCGGCTTACGCATTCTACCTCTTCGGCCGGCTGA
** * * * *
31836135 GCACCCATACGCTCGTTTCATGGGTTGGCTTAGGCATA-CGATGTTCATTCTATGTCTAAGCCCT
66 GCACCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGA-GTTCATTCCATGTCTAAGCCC-
*
31836199 AATCGGACCGAGGGTTGTGGCAGCAGGACCTGTAGCGAGATCGACAGCACGCAGAAGGGGACCGG
129 AATCGGACCGAGGGTTGTGGCAGCGGGACC-G--GC-AG--C-AC-GCA-G-AG--GGGGACCGG
* * * * * * * * *
31836264 GTTGATCCCTGGCTTATGCAATATGCCTTTTCGGTTGGCTGAGTGCCCGCACT-CTGGTTTCGTG
182 GTTGATCCCTGGCTTGTGCATTATGCCTCTTCAGTTGGCTCAGCGCCCG-AATGCTCGTTTCATG
* * *
31836328 GGTTGACTTAGGCATATGGAGTTCA-TCCGTAGTCTAAGCATACGAAGTTCATTCCCAGTCTGAG
246 GGTTGACTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCATACGAAGTTCATTCCCAGTCTAAG
* *
31836392 ATCGGATCGGACCGAGGGTTGCGA-CAATAGGATT
310 ATCGGATCGGACCGAGGGTTGCGACCAACAGGATC
** * * **
31836426 GGCTTCACGCAGGGGGGACCGAGCT-GATCCCCGGCTTACGCATTCTACCT-TTCCGGCCAACTG
1 GGCAGCACGCAGGGGGGACCGAGGTCGATCCTCGGCTTACGCATTCTACCTCTT-CGGCCGGCTG
* * * *
31836489 AGCGCCCGCATGCCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTGATTCCATGTCTAAGCGCC
65 AGCACCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC-CC
* * *
31836554 AGTCGGACCGAGGGTTGTGGTAGCGGGACCGGCAGCACGCAGAGGGAGACCGGGTTGATCCCTGG
129 AATCGGACCGAGGGTTGTGGCAGCGGGACCGGCAGCACGCAGAGGGGGACCGGGTTGATCCCTGG
* * * **
31836619 CTTGTGCATTATCCCTCTTCAGTTGGCTCAGCGCCCGGATGCTCGTTTTATGGGTTGACTTTTGC
194 CTTGTGCATTATGCCTCTTCAGTTGGCTCAGCGCCCGAATGCTCGTTTCATGGGTTGACTTAGGC
** * *
31836684 ATACGGAGTTCATTCCATGTCTAAGCATAC-AGAGTTCATTCCCAGTCTAAGATCAAATTGGATC
259 ATACGGAGTTCATTCCATGTCTAAGCATACGA-AGTTCATTCCCAGTCTAAGATCGGATCGGACC
31836748 GAGGGTTACAGCAGCAGGACCAGCAGCAGGATC
323 GAGGGTT------GC--GACCA--A-CAGGATC
* * ** * *
31836781 GACAGCACGTAGGGGGGAATG-GGTCGATCCTCGGCTTACGCTTTCTGCCTCTTCGGCCGGCTGA
1 GGCAGCACGCAGGGGGGACCGAGGTCGATCCTCGGCTTACGCATTCTACCTCTTCGGCCGGCTGA
*
31836845 GCACCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCTCA
66 GCACCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCC-CA
* * * * * *
31836910 ACCGGACCGAGGGTTGTGGCAGCGAGACCGACAGCACGCAGAGGGGGACCGAGCTG-TTCCTCGG
130 ATCGGACCGAGGGTTGTGGCAGCGGGACCGGCAGCACGCAGAGGGGGACCGGGTTGATCCCT-GG
* * * ** * * *
31836974 CTTGCGTATTATGCCTCTGCAGTCAGCTCAACGCCCGAACGCTCGTTTCGTGGGTTGACTTAGGC
194 CTTGTGCATTATGCCTCTTCAGTTGGCTCAGCGCCCGAATGCTCGTTTCATGGGTTGACTTAGGC
*
31837039 ATACGAAGTTCATT
259 ATACGGAGTTCATT
31837053 ACCCAATCTA
Statistics
Matches: 786, Mismatches: 149, Indels: 82
0.77 0.15 0.08
Matches are distributed among these distances:
342 7 0.01
343 235 0.30
344 5 0.01
345 13 0.02
346 2 0.00
347 5 0.01
348 2 0.00
349 4 0.01
350 2 0.00
351 6 0.01
352 4 0.01
353 5 0.01
354 127 0.16
355 357 0.45
356 12 0.02
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.25
Consensus pattern (344 bp):
GGCAGCACGCAGGGGGGACCGAGGTCGATCCTCGGCTTACGCATTCTACCTCTTCGGCCGGCTGA
GCACCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCAA
TCGGACCGAGGGTTGTGGCAGCGGGACCGGCAGCACGCAGAGGGGGACCGGGTTGATCCCTGGCT
TGTGCATTATGCCTCTTCAGTTGGCTCAGCGCCCGAATGCTCGTTTCATGGGTTGACTTAGGCAT
ACGGAGTTCATTCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAG
GGTTGCGACCAACAGGATC
Found at i:31836718 original size:26 final size:26
Alignment explanation
Indices: 31836682--31836734 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31836672 GTTGACTTTT
*
31836682 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
31836708 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
31836734 G
1 G
31836735 ATCAAATTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:31837232 original size:26 final size:26
Alignment explanation
Indices: 31837195--31837247 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31837185 GTGGGCTTAG
*
31837195 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
31837221 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
31837247 G
1 G
31837248 ATCAGACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:31838995 original size:157 final size:157
Alignment explanation
Indices: 31838614--31838998 Score: 377
Period size: 159 Copynumber: 2.4 Consensus size: 157
31838604 CCGCTCCGAC
* * * * **
31838614 CGACTAAGCACCCGCATGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGAGTA
1 CGACTCAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
* * ***
31838679 AGCCCCAACCGGACTGAGGGTTGTGGTAGTGGGATCGACAGCACGCAGAGGGGGACCCAGCCTGT
66 AGCACCAACCGGACTGAGGGTTGAGGTAACAGGATCGACAGCACGCAGAGGGGG--CCAGCCTGT
31838744 CCCTCGCTTGCGCATTATGCCTCTCCGGT
129 CCCTCGCTTGCGCATTATGCCTCTCCGGT
* * * * * *
31838773 CGACTCAGCACCCGTACGCTCATTTCATGGGTTGACTTAGGCATATGGATTTCATTCTCA-ATCT
1 CGACTCAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTC-CATGTCT
* * * ** *
31838837 AAG-ATCAGATCGGACTGAGGGTTGCAGG-AACAGGATTGACAGCACGCAG-GGGGG-TGGGCTG
65 AAGCACCA-ACCGGACTGAGGGTTG-AGGTAACAGGATCGACAGCACGCAGAGGGGGCCAGCCT-
* * *
31838898 GTTCCTCGGCTTGCGCATTCTGCCTCT-TGGAT
127 GTCCCTC-GCTTGCGCATTATGCCTCTCCGG-T
* * ** *
31838930 CGACTGAGCGCCCGCACTTTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTA
1 CGACTCAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
31838995 AGCA
66 AGCA
31838999 TATAGAGGTC
Statistics
Matches: 182, Mismatches: 36, Indels: 17
0.77 0.15 0.07
Matches are distributed among these distances:
155 3 0.02
156 10 0.05
157 72 0.40
158 8 0.04
159 85 0.47
160 4 0.02
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (157 bp):
CGACTCAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
AGCACCAACCGGACTGAGGGTTGAGGTAACAGGATCGACAGCACGCAGAGGGGGCCAGCCTGTCC
CTCGCTTGCGCATTATGCCTCTCCGGT
Found at i:31840042 original size:26 final size:26
Alignment explanation
Indices: 31840006--31840058 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
31839996 GTTGACTTAG
*
31840006 GCATACGGAGTTGATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
**
31840032 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
31840058 G
1 G
31840059 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:31840061 original size:355 final size:355
Alignment explanation
Indices: 31838930--31840588 Score: 942
Period size: 355 Copynumber: 4.8 Consensus size: 355
31838920 CCTCTTGGAT
** * * * *
31838930 CGACTGAGCGCCCGCACTTTCGTTTC-ATGGGTTGGCTTAGGCATAC-GAAGTTCATTCCATGTC
1 CGACTGAGCGCCCGCACGCTCG-TTCAATGGGTTGACTTAGGCATACAG-AGATCATCCCATCTC
* * * * * * * *
31838993 TAAGCATA-TAGAGGTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGTAGGATC
64 TAAGCATACGA-AGTTCATTCCCAGTCTAAGATCAGACCGAAACGAAGGTTACGACAGCAGGATC
* * * * * * * ** * ** *
31839057 GACAGCACGTAGGAGGGATCGAGCTGATCCCCGGCTTGTGCATTCTACCTCTCCAACTGGCTGAA
128 GACAGCACGCAGGAGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGATTGAG
* * * * * * * * * *
31839122 AGCCCGCATGCCCATTTCGTGGGTTGTCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAG
193 CGCCCACACGCCCATTTCATGGGTTGGCTTAGCCATACGGAGTTCATTCCAGGTCTAAGCCCCAA
* * * * * * *
31839187 CCGGACTGAGGGTTGTGGCAGT--G---GG-ACT--GA-CAGCA-C--GCAGAGGGGG-CCAGGC
258 CCAGACCGAGGGTTGTGGCAGTAGGATCGGTAGTGGGATCAGCAGCATACAGAGGGGGATCGGGT
** * * ***
31839239 CAATCCCCGGCTTACGCATTATGCCTCTCCAAT
323 TGATCCCCGACTTACGCACTATGCCTCTCCGGC
* * * ** * * * * *
31839272 CGGCTCAACGCCCGCACGCTCGTTTTATGGGTTGGCTTAGGCATACGGAGTTCATTCCATATCTA
1 CGACTGAGCGCCCGCACGCTCGTTCAATGGGTTGACTTAGGCATACAGAGATCATCCCATCTCTA
* * * * * * * *
31839337 AGCATATGGAGTTCATTCCCAGTATAAGATCGGACCGAACCGAGGGTT--G-CAGCAGTA-GGAC
66 AGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGAAACGAAGGTTACGACAGCAGGATCGA-
* * * * * * * * * * *
31839398 CAGC-TGTAGGGGGGATCGGGCTGATCCCCGGCTTGCGTATTTTGCCTCTCCGGCTGGTTGAACG
130 CAGCACGCAGGAGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGATTGAGCG
** * * * * * ** *
31839462 CCTGCACACTCATTTTATGGGTTGGCTTAGGCATACGGAGTTCATTCCCA-ATCTAAGATCAAAC
195 CCCACACGCCCATTTCATGGGTTGGCTTAGCCATACGGAGTTCATT-CCAGGTCTAAGCCCCAAC
* * * * * * * * * ** * * ***
31839526 CGGATCGA-GGAT-T-ACGGTAGCA--AG-A-T-CGA-CAGCA-CGT-GGGA-AGGGACCGGACC
259 CAGACCGAGGGTTGTGGCAGTAGGATCGGTAGTGGGATCAGCAGCATACAGAGGGGGATCGGGTT
* * * * *
31839579 GATCCCTGGCTTACGCATTCTGCCTCTCCGGT
324 GATCCCCGACTTACGCACTATGCCTCTCCGGC
* * * * *
31839611 CGGCTTAGCGCCCGCACGCTCGTTTAATGGGTTGGCTTAGGCATACAGAGATCATTCCATCTCTA
1 CGACTGAGCGCCCGCACGCTCGTTCAATGGGTTGACTTAGGCATACAGAGATCATCCCATCTCTA
* * * * *
31839676 AGCATACGAAGTTCATTCCCAGTGTAAGATCGGATCGAAAGGAAGGTTGC-AGCAGCAGGATCGA
66 AGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGAAACGAAGGTTACGA-CAGCAGGATCGA
* * * * *
31839740 CAGCACGCAGGAGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTTTTCGGTCGGTTGAGCG
130 CAGCACGCAGGAGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGATTGAGCG
* * * * * * *
31839805 -CCAGTATGCTCGTTTTATGGGTTGGCTTAGCCATACGGAGTTCATTCTAGGTCTAAGTCCCAAC
195 CCCA-CACGCCCATTTCATGGGTTGGCTTAGCCATACGGAGTTCATTCCAGGTCTAAGCCCCAAC
**
31839869 TGGACCGAGGGTTGTGGCAGTAGGATCGGTAGTGGGATCAGCAGCATACAGAGGGGGATCGGGTT
259 CAGACCGAGGGTTGTGGCAGTAGGATCGGTAGTGGGATCAGCAGCATACAGAGGGGGATCGGGTT
*
31839934 GATCCCCGACTTACGCACTATGCCTCTCTGGC
324 GATCCCCGACTTACGCACTATGCCTCTCCGGC
** * * * *
31839966 CGACTGAGCGCCCGCACGCTCGTTCCGTGGGTTGACTTAGGCATACGGAGTTGATCCCCA-GTCT
1 CGACTGAGCGCCCGCACGCTCGTTCAATGGGTTGACTTAGGCATACAGAGATCAT-CCCATCTCT
* * * * * *
31840030 AAGCATACGGAGTTCATTTCCAGTCTAAGATCAGACCGGATCGATGGTTACGACAGTAGGATCGA
65 AAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGAAACGAAGGTTACGACAGCAGGATCGA
* *
31840095 CAGCACGCAGGGGGGATCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGATTGAGCG
130 CAGCACGCAGGAGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGATTGAGCG
* * * * *
31840160 CCCACACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCC
195 CCCACACGCCCATTTCATGGGTTGGCTTAGCCATACGGAGTTCATTCCAGGTCTAAGCCCCAACC
* * * * * * *
31840225 AGATCGAGGGTTGTGGC---A--A-CGGGACCT--G--CAGCA-CGT--AGAGGGGGACCAGGTC
260 AGACCGAGGGTTGTGGCAGTAGGATCGGTA-GTGGGATCAGCAGCATACAGAGGGGGATCGGGTT
* * * *
31840277 GATCCCTGACTTGCGCATTATGCCTCTTCGGC
324 GATCCCCGACTTACGCACTATGCCTCTCCGGC
* ** *** * ** * * * * *
31840309 CGGCTCCGTATCCGCACGCTCGTTTC-ATGGTTTGACTTTTGCATACGGAGTTCTTTCCATGTCT
1 CGACTGAGCGCCCGCACGCTCG-TTCAATGGGTTGACTTAGGCATACAGAGATCATCCCATCTCT
* * * * * *
31840373 AAGCATACGAAGTTCATTCCCAGTCTAAGATCCA-ACTGTATCGAGGGTTATGGCAGCAGGATC-
65 AAGCATACGAAGTTCATTCCCAGTCTAAGAT-CAGACCGAAACGAAGGTTACGACAGCAGGATCG
* * * * * * * * *
31840436 AGCCGCACGTAACGAGGGACCGGGCTGATCCTCGGCTTTGCGCATTCTACCTTTCCGGCC-AGCT
129 A-CAGCACG-CAGGAGGGACCGGGCCGATCCCCGAC-TTGCGCATTCTGCCTCTCCGGCCGA-TT
* * * * * * * *
31840500 AAGCACCCACACGCCCGTTTCGTGGATTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCC
190 GAGCGCCCACACGCCCATTTCATGGGTTGGCTTAGCCATACGGAGTTCATTCCAGGTCTAAGCCC
* ** *
31840565 CAGCGGGACTGAGGGTTGTGGCAG
255 CAACCAGACCGAGGGTTGTGGCAG
31840589 CGGGACCGAC
Statistics
Matches: 1060, Mismatches: 212, Indels: 85
0.78 0.16 0.06
Matches are distributed among these distances:
335 3 0.00
336 1 0.00
337 4 0.00
338 117 0.11
339 147 0.14
340 1 0.00
341 2 0.00
342 113 0.11
343 245 0.23
344 28 0.03
345 104 0.10
346 11 0.01
348 2 0.00
349 5 0.00
350 3 0.00
351 2 0.00
352 6 0.01
353 2 0.00
354 2 0.00
355 255 0.24
356 7 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (355 bp):
CGACTGAGCGCCCGCACGCTCGTTCAATGGGTTGACTTAGGCATACAGAGATCATCCCATCTCTA
AGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGAAACGAAGGTTACGACAGCAGGATCGAC
AGCACGCAGGAGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGATTGAGCGC
CCACACGCCCATTTCATGGGTTGGCTTAGCCATACGGAGTTCATTCCAGGTCTAAGCCCCAACCA
GACCGAGGGTTGTGGCAGTAGGATCGGTAGTGGGATCAGCAGCATACAGAGGGGGATCGGGTTGA
TCCCCGACTTACGCACTATGCCTCTCCGGC
Found at i:31840386 original size:26 final size:26
Alignment explanation
Indices: 31840349--31840401 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
31840339 TTTGACTTTT
* *
31840349 GCATACGGAGTTC-TTTCCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
31840375 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
31840401 G
1 G
31840402 ATCCAACTGT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:31840431 original size:698 final size:695
Alignment explanation
Indices: 31839280--31840588 Score: 1497
Period size: 698 Copynumber: 1.9 Consensus size: 695
31839270 ATCGGCTCAA
** * * *
31839280 CGCCCGCACGCTCGTTTTATGGGTTGGCTTAGGCATACGGAGTTCATTCCATATCTAAGCATATG
1 CGCCCGCACGCTCGTTCCATGGGTTGACTTAGGCATACGGAGTTCATCCCATATCTAAGCATACG
* * * *
31839345 GAGTTCATTCCCAGTATAAGATCGGACCGAACCGAGGGTTGCAGCAGTAGGACCAGCTGTAGGGG
66 GAGTTCATTCCCAGTATAAGATCAGACCGAACCGAGGGTTACAGCAGTAGGACCAGCCGCAGGGG
* * * * * * ** *
31839410 GGATCGGGCTGATCCCCGGCTTGCGTATTTTGCCTCTCCGGCTGGTTGAACGCCTGCACACTCAT
131 GGATCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGATTGAACGCCCACACACCCAT
* * *
31839475 TTTATGGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAAACCGGATCGAGGATTA
196 TTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGACCAAACCAGATCGAGGATTA
* * * * *
31839540 CGGTAGCAAGATCGACAGCACGTGGGAAGGGACCGGACCGATCCCTGGCTTACGCATTCTGCCTC
261 CGGCAACAAGACCGACAGCACGTGGG-AGGGACCGGACCGATCCCTGACTTACGCATTATGCCTC
* * * *
31839605 TCCGGTCGGCTTAGCGCCCGCACGCTCGTTTAATGGGTTGGCTTAGGCATACAGAGATCATTCCA
325 TCCGGCCGGCTCAGCACCCGCACGCTCGTTTAATGGGTTGACTTAGGCATACAGAGATCATTCCA
* ** * *
31839670 TCTCTAAGCATACGAAGTTCATTCCCAGTGTAAGATCGGATCGAAAGGAAGGTTGCAGCAGCAGG
390 TCTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCCAATCGAAACGAAGGTTACAGCAGCAGG
* * * * * *
31839735 ATC-GACAGCACG-CAGGAGGGACCGGGCCGATCCCCGGC-TTGCGCATTCTGCCTTTTCGGTCG
455 ATCAG-CAGCACGTAACGAGGGACCGGGCCGATCCCCGGCTTTGCGCATTCTACCTTTCCGGCCA
* * * * * * * * *
31839797 GTTGAGC-GCCAGTATGCTCGTTTTATGGGTTGGCTTAGCCATACGGAGTTCATTCTAGGTCTAA
519 GCTAAGCACCCA-CACGCCCGTTTCATGGATTGGCTTAGCCATACGGAGTTCATTCCAGGTCTAA
* *
31839861 GTCCCAACTGGACCGAGGGTTGTGGCAGTAGGATCGGTAGTGGGATCAGCAGCATACAGAGGGGG
583 GCCCCAACGGGACCGAGGGTTGTGGCAGTAGGATCGGTAGTGGGATCAGCAGCATACAGAGGGGG
31839926 ATCGGGTTGATCCCCGACTTACGCACTATGCCTCTCTGGCCGACTGAG
648 ATCGGGTTGATCCCCGACTTACGCACTATGCCTCTCTGGCCGACTGAG
* * *
31839974 CGCCCGCACGCTCGTTCCGTGGGTTGACTTAGGCATACGGAGTTGATCCCCA-GTCTAAGCATAC
1 CGCCCGCACGCTCGTTCCATGGGTTGACTTAGGCATACGGAGTTCAT-CCCATATCTAAGCATAC
* * * * *
31840038 GGAGTTCATTTCCAGTCTAAGATCAGACCGGATCGATGGTTAC-GACAGTAGGATCGACAGCACG
65 GGAGTTCATTCCCAGTATAAGATCAGACCGAACCGAGGGTTACAG-CAGTAGGA-C--CAGC-CG
*
31840102 CAGGGGGGATCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGATTGAGCGCCCACAC
125 CAGGGGGGATCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGATTGAACGCCCACAC
* * * * * * *
31840167 GCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCCAGCCAGATCG
190 ACCCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCA-ATCTAAGACCAAACCAGATCG
* ** ** * *
31840231 AGGGTTGTGGCAACGGGACCTG-CAGCACGTAGAGG-GGGACCAGG-TCGATCCCTGACTTGCGC
254 AGGATTACGGCAACAAGACC-GACAGCACGT-G-GGAGGGACC-GGACCGATCCCTGACTTACGC
* * * * * * ** *
31840293 ATTATGCCTCTTCGGCCGGCTCCGTATCCGCACGCTCGTTTCATGGTTTGACTTTTGCATACGGA
315 ATTATGCCTCTCCGGCCGGCTCAGCACCCGCACGCTCGTTTAATGGGTTGACTTAGGCATACAGA
* * * * * *
31840358 GTTCTTTCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCCAA-CTGTATCGAGGGTT
380 GATCATTCCATCTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCCAATC-GAAACGAAGGTT
** * * *
31840422 ATGGCAGCAGGATCAGCCGCACGTAACGAGGGACCGGGCTGATCCTCGGCTTTGCGCATTCTACC
444 ACAGCAGCAGGATCAGCAGCACGTAACGAGGGACCGGGCCGATCCCCGGCTTTGCGCATTCTACC
* * *
31840487 TTTCCGGCCAGCTAAGCACCCACACGCCCGTTTCGTGGATTGGCTTAGGCATAGGGAGTTCATTC
509 TTTCCGGCCAGCTAAGCACCCACACGCCCGTTTCATGGATTGGCTTAGCCATACGGAGTTCATTC
* * *
31840552 CATGTCTAAGCCCCAGCGGGACTGAGGGTTGTGGCAG
574 CAGGTCTAAGCCCCAACGGGACCGAGGGTTGTGGCAG
31840589 CGGGACCGAC
Statistics
Matches: 498, Mismatches: 101, Indels: 26
0.80 0.16 0.04
Matches are distributed among these distances:
693 1 0.00
694 96 0.19
695 4 0.01
697 8 0.02
698 266 0.53
699 27 0.05
700 93 0.19
701 3 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (695 bp):
CGCCCGCACGCTCGTTCCATGGGTTGACTTAGGCATACGGAGTTCATCCCATATCTAAGCATACG
GAGTTCATTCCCAGTATAAGATCAGACCGAACCGAGGGTTACAGCAGTAGGACCAGCCGCAGGGG
GGATCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGATTGAACGCCCACACACCCAT
TTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGACCAAACCAGATCGAGGATTA
CGGCAACAAGACCGACAGCACGTGGGAGGGACCGGACCGATCCCTGACTTACGCATTATGCCTCT
CCGGCCGGCTCAGCACCCGCACGCTCGTTTAATGGGTTGACTTAGGCATACAGAGATCATTCCAT
CTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCCAATCGAAACGAAGGTTACAGCAGCAGGA
TCAGCAGCACGTAACGAGGGACCGGGCCGATCCCCGGCTTTGCGCATTCTACCTTTCCGGCCAGC
TAAGCACCCACACGCCCGTTTCATGGATTGGCTTAGCCATACGGAGTTCATTCCAGGTCTAAGCC
CCAACGGGACCGAGGGTTGTGGCAGTAGGATCGGTAGTGGGATCAGCAGCATACAGAGGGGGATC
GGGTTGATCCCCGACTTACGCACTATGCCTCTCTGGCCGACTGAG
Found at i:31841811 original size:26 final size:26
Alignment explanation
Indices: 31841775--31841826 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
31841765 TTGGCTTGGA
31841775 CATACGGAGTTCATTCC-ATGTCTAAG
1 CATACGGAGTTCATTCCTA-GTCTAAG
31841801 CATACGGAGTTCATTCCTAGTCTAAG
1 CATACGGAGTTCATTCCTAGTCTAAG
31841827 ATTTTGGGCC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (26 bp):
CATACGGAGTTCATTCCTAGTCTAAG
Found at i:31842518 original size:26 final size:26
Alignment explanation
Indices: 31842488--31842538 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
31842478 GTTGACTTAG
*
31842488 GCATACGGAGTTCATCCCCAGTCTAC
1 GCATACGGAGTTCATCCCCAATCTAC
*
31842514 GCATACGGAGTTCATTCCCAATCTA
1 GCATACGGAGTTCATCCCCAATCTA
31842539 AGATCAGACT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.31, G:0.18, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAC
Found at i:31843707 original size:159 final size:158
Alignment explanation
Indices: 31843332--31843737 Score: 381
Period size: 159 Copynumber: 2.6 Consensus size: 158
31843322 CCCACAGGCC
* * * *
31843332 CATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTACACCCCAGCCGGACCGAGGG
1 CATTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTA-AGCCCAGCCGGACCGAGGG
* * * ** *
31843397 TTGTGGCAGCGGGATCGACATCATGCAGAGGGGGATTGGGCCGATCCCCGACTTGCGCATTATGC
65 TTGTAGCAGCAGGATCGACAGCATGCAGAGGGGGACCGGGCCGATCCCCGACTTACGCATTATGC
31843462 CTCTCCAGCTGGCTTAGCACCCGAACGCT
130 CTCTCCAGCTGGCTTAGCACCCGAACGCT
* * * * **
31843491 CGTTTCGTGGGTTGACTTAGGCAAAC-AGAGTTCATTCCCA-ATCTAAGATCAGACCGGACCGAG
1 CATTTCGTGGGTTGGCTTAGGCATACGA-AGTTCATT-CCATGTCTAAGCCCAG-CCGGACCGAG
* * * * * ** *
31843554 TGTT-TCAGTAGCAGGATCGATAGCATGCA-AGAGGGGACCGGGTCGGTCCTTGGCTTACGCATT
63 GGTTGT-AGCAGCAGGATCGACAGCATGCAGAG-GGGGACCGGGCCGATCCCCGACTTACGCATT
* * * * * ***
31843617 CTTCCTCTCCGGTTGG-TTGAGCGCCCGCTTGCT
126 ATGCCTCTCCAGCTGGCTT-AGCACCCGAACGCT
*
31843650 CATTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCTAGCCGGACCAAGGG
1 CATTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCC-AGCCGGACCGAGGG
* * *
31843715 TTGTGGCAGCAGGACCGGCAGCA
65 TTGTAGCAGCAGGATCGACAGCA
31843738 GGATCGGCAA
Statistics
Matches: 192, Mismatches: 45, Indels: 20
0.75 0.18 0.08
Matches are distributed among these distances:
158 12 0.06
159 173 0.90
160 7 0.04
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (158 bp):
CATTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCAGCCGGACCGAGGGT
TGTAGCAGCAGGATCGACAGCATGCAGAGGGGGACCGGGCCGATCCCCGACTTACGCATTATGCC
TCTCCAGCTGGCTTAGCACCCGAACGCT
Found at i:31844181 original size:158 final size:158
Alignment explanation
Indices: 31843879--31844212 Score: 379
Period size: 158 Copynumber: 2.1 Consensus size: 158
31843869 CCCAGTCTAA
* * * *
31843879 GCATACGAAGTTCATTCCCAGTCTAAGATCGGATTGGACCGAGGGTTGCGGCAACAGGATTGATA
1 GCATACGAAGTTCATTCCCAGTATAAGATCGGATCGGACCGAGGGTTGCGGCAACAGGATCGACA
* *** *
31843944 GCACGCAAGGGGGACCGGGCTGATCACCGGCTTGTGTATTATGCCTCTCCAACCGACTCAATGCC
66 GCACGCAAGGGGGACCGGGCTGATCACCAGCTTGCACATTATACCTCTCCAACCGACTCAATGCC
31844009 CGAACACTCATTTCATGGGTTAACTTAG
131 CGAACACTCATTTCATGGGTTAACTTAG
* * *
31844037 GCATACGAAGTTCATTCCCAGTATAAGATTGGATCGGACCGAGGGTTGCGGTAGCAGGATCGACA
1 GCATACGAAGTTCATTCCCAGTATAAGATCGGATCGGACCGAGGGTTGCGGCAACAGGATCGACA
* * * * * * *
31844102 GCACG-TAGGAGGGACCGGG-TCGGTCCCCAGCTTGCACATTTTACCTCTCCGACCGGCT-GA-G
66 GCACGCAAGG-GGGACCGGGCT-GATCACCAGCTTGCACATTATACCTCTCCAACCGACTCAATG
* ** * *
31844163 CACTCGCATGCTCGTTTCATGGGTTAGCTTAG
129 C-C-CGAACACTCATTTCATGGGTTAACTTAG
*
31844195 GCATACGGAGTTCATTCC
1 GCATACGAAGTTCATTCC
31844213 ATGGCAAAGT
Statistics
Matches: 147, Mismatches: 25, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
156 2 0.01
157 6 0.04
158 139 0.95
ACGTcount: A:0.23, C:0.26, G:0.28, T:0.24
Consensus pattern (158 bp):
GCATACGAAGTTCATTCCCAGTATAAGATCGGATCGGACCGAGGGTTGCGGCAACAGGATCGACA
GCACGCAAGGGGGACCGGGCTGATCACCAGCTTGCACATTATACCTCTCCAACCGACTCAATGCC
CGAACACTCATTTCATGGGTTAACTTAG
Found at i:31845149 original size:26 final size:26
Alignment explanation
Indices: 31845111--31845161 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
31845101 GTTGACTTAG
* * *
31845111 GCATACGGTGTTCATCCCCAGTCTAT
1 GCATACCGAGTTCATCCCCAATCTAT
*
31845137 GCATACCGAGTTCATTCCCAATCTA
1 GCATACCGAGTTCATCCCCAATCTA
31845162 AGATCATATC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.24, C:0.31, G:0.16, T:0.29
Consensus pattern (26 bp):
GCATACCGAGTTCATCCCCAATCTAT
Found at i:31845641 original size:26 final size:26
Alignment explanation
Indices: 31845612--31845664 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
31845602 ATTGGCTTAG
* *
31845612 GCATACGGAGTTTATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
31845638 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
31845664 G
1 G
31845665 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:31845837 original size:26 final size:26
Alignment explanation
Indices: 31845808--31845860 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
31845798 GTTGACTTAG
31845808 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
31845834 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
31845860 G
1 G
31845861 ATCAGACAGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:31846290 original size:26 final size:26
Alignment explanation
Indices: 31846254--31846306 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
31846244 GTTGGCTTAG
31846254 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
31846280 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
31846306 G
1 G
31846307 ATCAGACCAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:31846492 original size:26 final size:25
Alignment explanation
Indices: 31846463--31846540 Score: 120
Period size: 26 Copynumber: 3.0 Consensus size: 25
31846453 GTTGACTTAG
*
31846463 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCA-TCTAA
31846489 GCATACAGAGTTCATCCCCACTCTAA
1 GCATACAGAGTTCATCCCCA-TCTAA
*
31846515 GCATACAGAGTTCATTCCCATCTAA
1 GCATACAGAGTTCATCCCCATCTAA
31846540 G
1 G
31846541 ATCGGACCGG
Statistics
Matches: 49, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
25 6 0.12
26 43 0.88
ACGTcount: A:0.29, C:0.31, G:0.15, T:0.24
Consensus pattern (25 bp):
GCATACAGAGTTCATCCCCATCTAA
Found at i:31846869 original size:159 final size:150
Alignment explanation
Indices: 31846515--31846924 Score: 367
Period size: 159 Copynumber: 2.7 Consensus size: 150
31846505 CCCACTCTAA
* * *
31846515 GCATACAGAGTTCATTCCCA-TCTAAGATCGGACCGGACCGAGGGTTTCGGTAGTACGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTT-GGCAGTAGGATCGACA
* * * * * * ** * * *
31846579 GCACGCAGCGAGGATCAGGCCGATCCCTAGCTTGTGCATTCTGCCTCTCCGACCCTTTCACACGC
65 GCACGCAGGGGGGATCGGGCTGATCCTTGGCTTACGCACTATGCCTCTCCGACCCTTCCACACGC
* *
31846644 TCGTTTCGTGGGTTGGCTTAG
130 TCGTTTCATGGGTTGACTTAG
* * ** ** * * *
31846665 GCATAGGGAGTTCATT-CTATGTCTAAGCCCCAACCGGACCAAGGGTTGTGGCAGTGGGATCGGC
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGACCGGACCGAGGGTT-TGGCAGTAGGATCGAC
*
31846729 AGCACGCAGAGGGGGATCGGGCTGATCCTTGGCTTACGCACTATGCCTCTCCGGCCAGCTTAGCG
64 AGCACGCAG-GGGGGATCGGGCTGATCCTTGGCTTACGCACTATGCCTCTCCGACC--CTT----
* *
31846794 CCCACATGCTTGTTTCATGGGTTGACTTAG
122 -CCACACGCTCGTTTCATGGGTTGACTTAG
* * * *
31846824 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTATGACAGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTT-TGGCAGTAGGATCGACA
* * *
31846889 GTACGCAGGGGGGATCGGG-TCGGTCCTCGGCTTACG
65 GCACGCAGGGGGGATCGGGCT-GATCCTTGGCTTACG
31846925 TATTCTACCT
Statistics
Matches: 202, Mismatches: 45, Indels: 18
0.76 0.17 0.07
Matches are distributed among these distances:
149 2 0.01
150 14 0.07
151 41 0.20
152 36 0.18
154 3 0.01
157 1 0.00
158 24 0.12
159 79 0.39
160 2 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (150 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTTGGCAGTAGGATCGACAG
CACGCAGGGGGGATCGGGCTGATCCTTGGCTTACGCACTATGCCTCTCCGACCCTTCCACACGCT
CGTTTCATGGGTTGACTTAG
Found at i:31847447 original size:26 final size:26
Alignment explanation
Indices: 31847417--31847469 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
31847407 GTTGACTTAG
31847417 GCATAC-AGAGTTCA-TCCCTAGTCTAA
1 GCATACGA-AGTTCATTCCC-AGTCTAA
31847443 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
31847469 G
1 G
31847470 ATCTAACTGG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:31848331 original size:26 final size:26
Alignment explanation
Indices: 31848301--31848353 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
31848291 GTTGACTTAG
31848301 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
31848327 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
31848353 G
1 G
31848354 ATCGGATAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:31848804 original size:157 final size:159
Alignment explanation
Indices: 31848549--31848860 Score: 391
Period size: 157 Copynumber: 2.0 Consensus size: 159
31848539 GTGGGACCAG
**** *
31848549 CAGCACGCAGAGGGGGATCGAGTCGATCCTTGGCTTGCGCATTATGCCTCTCTGGCCGGCTCAAT
1 CAGCACGCAGAGGGGGATCGAGTCGATCCCCAACTTGCGCATTATGCCTCTCCGGCCGGCTCAAT
*
31848614 GCCCGAACGCTCATTTCGTGGGTTGACTTAGGCATACAAAATTCATTCCCAGTCTAAGATCAGA-
66 GCCCGAACGCTCATTTCATGGGTTGACTTAGGCATACAAAATTCATTCCCAGTCTAAGATCAGAC
*
31848678 TCGGATCGAGGGTTGTGATAGCAGGATCGA
131 T-GGATCGAGGGTTGCGATAGCAGGATCGA
* * * *
31848708 CAGCACGCAG-GGGGGATCGGGTCGGTCCCCAACTTGTGCATTATGCCTCTCCGGTC-GCT-AA-
1 CAGCACGCAGAGGGGGATCGAGTCGATCCCCAACTTGCGCATTATGCCTCTCCGGCCGGCTCAAT
* * * * * **
31848769 GCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTGG
66 G--CCCGAACGCTCATTTCATGGGTTGACTTAGGCATACAAAATTCATTCCCAGTCTAAGATCAG
*
31848834 ACTGGATCGAGGGTTGCGATAGTAGGA
129 ACTGGATCGAGGGTTGCGATAGCAGGA
31848861 CTAGCAACAG
Statistics
Matches: 131, Mismatches: 19, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
155 1 0.01
156 2 0.02
157 80 0.61
158 38 0.29
159 10 0.08
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.24
Consensus pattern (159 bp):
CAGCACGCAGAGGGGGATCGAGTCGATCCCCAACTTGCGCATTATGCCTCTCCGGCCGGCTCAAT
GCCCGAACGCTCATTTCATGGGTTGACTTAGGCATACAAAATTCATTCCCAGTCTAAGATCAGAC
TGGATCGAGGGTTGCGATAGCAGGATCGA
Found at i:31849022 original size:26 final size:26
Alignment explanation
Indices: 31848985--31849063 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
31848975 GTTGACTTAG
31848985 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
31849011 GCATACGAAGTTCATCCCCACTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
31849037 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
31849063 G
1 G
31849064 ATCAGACCAA
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.28, C:0.30, G:0.18, T:0.24
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:31850399 original size:159 final size:157
Alignment explanation
Indices: 31850073--31850416 Score: 385
Period size: 159 Copynumber: 2.2 Consensus size: 157
31850063 CCAGTCTAAG
* * * *
31850073 CATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGACAGCAGGATCGACGG
1 CATACGGAGTTCATTCCCAGTCTAAGACCAGACCGGACCAAGGGTTACGACAGCAGGATCGACGG
* * ** *
31850138 CACGCAGGGGGGACCGGGCCGATCCTCGACTAGCGCATTCTGCCTCTCCGGCCTACTGAGCGCCC
66 CACACAGGGGGGACCGGGCCGATCCCCGACTAGCGCATTCTGCCTCTCC-GAATACAGAGCGCCC
** * **
31850203 GTACGCCTATTTCGTGGGTTGGCTTAGG
130 ACACGCCTATTTCATGGGTTGGCTTACA
* *
31850231 CATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCGGACCAAGGGTTACGACAGCAGGATCGA-
1 CATACGGAGTTCATTCCCA-GTCTAAG-ACCAGACCGGACCAAGGGTTACGACAGCAGGATCGAC
* * *
31850293 GAGCACATAGGGGGGGACCGGGTCGATCCCCGGCTTA-CGCATTCTGCCTCTCC-AATAGGCAGA
64 G-GCACACA-GGGGGGACCGGGCCGATCCCCGAC-TAGCGCATTCTGCCTCTCCGAATA--CAGA
*
31850356 GCGCCCACACG-CTCGTTTCATGGGTTGGCTTACA
124 GCGCCCACACGCCT-ATTTCATGGGTTGGCTTACA
31850390 CATACGGAGTTCATTCCCAGTCTAAGA
1 CATACGGAGTTCATTCCCAGTCTAAGA
31850417 TTTTGAGCCA
Statistics
Matches: 155, Mismatches: 22, Indels: 18
0.79 0.11 0.09
Matches are distributed among these distances:
157 6 0.04
158 55 0.35
159 89 0.57
160 5 0.03
ACGTcount: A:0.21, C:0.29, G:0.29, T:0.20
Consensus pattern (157 bp):
CATACGGAGTTCATTCCCAGTCTAAGACCAGACCGGACCAAGGGTTACGACAGCAGGATCGACGG
CACACAGGGGGGACCGGGCCGATCCCCGACTAGCGCATTCTGCCTCTCCGAATACAGAGCGCCCA
CACGCCTATTTCATGGGTTGGCTTACA
Found at i:31851136 original size:26 final size:26
Alignment explanation
Indices: 31851084--31851136 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
31851074 GTTGACTTAG
* *
31851084 GCATACGGAGTTCATCCCCAGTGTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* * *
31851110 GCATACGAATTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
31851136 G
1 G
31851137 ATCGAACCGC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:31851305 original size:26 final size:26
Alignment explanation
Indices: 31851268--31851320 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31851258 GTTGGCTTAG
31851268 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
31851294 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
31851320 G
1 G
31851321 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:31851684 original size:26 final size:26
Alignment explanation
Indices: 31851648--31851698 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
31851638 GTTGACTTAG
*
31851648 GCATATGGAGTTCATCCCCAGTCTAC
1 GCATAGGGAGTTCATCCCCAGTCTAC
*
31851674 GCATAGGGAGTTCATTCCCAGTCTA
1 GCATAGGGAGTTCATCCCCAGTCTA
31851699 AGATCGGATC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.27
Consensus pattern (26 bp):
GCATAGGGAGTTCATCCCCAGTCTAC
Found at i:31851862 original size:26 final size:26
Alignment explanation
Indices: 31851831--31851883 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
31851821 GTTGACTTAG
31851831 GCATAC-AGAGTTCATGCCCAGTCTAA
1 GCATACGA-AGTTCATGCCCAGTCTAA
* *
31851857 GCATACGAAGTTCATTCCCAGTTTAA
1 GCATACGAAGTTCATGCCCAGTCTAA
31851883 G
1 G
31851884 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATGCCCAGTCTAA
Found at i:31852018 original size:26 final size:26
Alignment explanation
Indices: 31851989--31852041 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
31851979 GTTGACTTAG
31851989 GCATACGGAGTTTATCCCCAGTCTAA
1 GCATACGGAGTTTATCCCCAGTCTAA
*
31852015 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTTATCCCCAGTCTAA
31852041 G
1 G
31852042 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTTATCCCCAGTCTAA
Found at i:31852088 original size:158 final size:158
Alignment explanation
Indices: 31851795--31852098 Score: 446
Period size: 158 Copynumber: 1.9 Consensus size: 158
31851785 TCTGACCGGC
* * *
31851795 TGAGCGCCCACACGCTTATTTCATGGGTTGACTTAGGCATACAGAGTTCATGCCCAGTCTAAGCA
1 TGAGCGCCCAAACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCA
* * *
31851860 TACGAAGTTCATTCCCAGTTTAAGATCAGACCGGACCAAGGGTTACAGCAGCAGGATCGATAGCA
66 TACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTACAGCAGCAGGATCGACAACA
*
31851925 TGCAGGGGGGACCGGGTCGATCCCCGAT
131 AGCAGGGGGGACCGGGTCGATCCCCGAT
* * * *
31851953 TGAGCGCCCAAATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTTATCCCCAGTCTAAGCA
1 TGAGCGCCCAAACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCA
* * * * * * *
31852018 TACGGAGTTTATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCAGGATCGACAACA
66 TACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTACAGCAGCAGGATCGACAACA
31852083 AGCAGGGGGGACCGGG
131 AGCAGGGGGGACCGGG
31852099 CCTATACCCG
Statistics
Matches: 128, Mismatches: 18, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
158 128 1.00
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.21
Consensus pattern (158 bp):
TGAGCGCCCAAACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCA
TACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTACAGCAGCAGGATCGACAACA
AGCAGGGGGGACCGGGTCGATCCCCGAT
Found at i:31852211 original size:26 final size:26
Alignment explanation
Indices: 31852173--31852224 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
31852163 GTTGGCTTAG
* *
31852173 GCATACGGTGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
31852199 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
31852225 CATCAGACCG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.23, G:0.19, T:0.33
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:31852259 original size:342 final size:341
Alignment explanation
Indices: 31851625--31852245 Score: 834
Period size: 342 Copynumber: 1.8 Consensus size: 341
31851615 GCTCCCGCAC
* * * *
31851625 GCTCATTTTATGGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCTACGCATAGGGAGTTCATT
1 GCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATT
* ** * *
31851690 CCCAGTCTAAGATCGGATCGGATCGAGCGTTGCGACAGCAGGATCGGTAGCACACAGGGGGTCCG
66 CCCAGTCTAAGATCGGATCGGACCGAGCGTTGCGACAGCAGGATCGACAACACACAGGGGGACCG
** * * *
31851755 AACCGATCCTCGACTTGTGCATTCTACCTCTCTGACCGGCTGAGCGCCCACACGCTTATTTCATG
131 AACCGATCCTCGACTTACGCATTCTACCTCTCTGACCGGCTGAACGCCCACACACTCATTTCATG
* *
31851820 GGTTGACTTAGGCATACAGAGTTCATGCCCAGTCTAAGCATACGAAGTTCATTCCCAGTTTAAGA
196 GGTTGACTTAGGCATACAGAGTTCATGCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAACA
*
31851885 TCAGACCGGACCAAGGGTTACAGCAGCAGGATCGATAGCATGCAGGGGGGACCGGGTCGATCCCC
261 TCAGACCGGACCAAGAGTTACAGCAGCAGGATCGATAGCATGCAGGGGGGACCGGGTCGATCCCC
31851950 GATTGAGCGCCCAAAT
326 GATTGAGCGCCCAAAT
* * *
31851966 GCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTTATCCCCAGTCTAAGCATACGGAGTTTATT
1 GCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATT
* *
31852031 CCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCAGGATCGACAACA-AGCAGGGGGGAC
66 CCCAGTCTAAGATCGGATCGGACCGAGCGTTGCGACAGCAGGATCGACAACACA-CA-GGGGGAC
** * * * *
31852095 CGGGCCTATACC-CGACTTACGCATTCTGCCTCT-TCGACCGGCTGAACGTCCGCACACTCATTT
129 CGAACCGAT-CCTCGACTTACGCATTCTACCTCTCT-GACCGGCTGAACGCCCACACACTCATTT
** * * * * * * *
31852158 TGTGGGTTGGCTTAGGCATACGGTGTTCATTCCTAGTCTAAGCATATGGAGTTCATTCCCAGTCT
192 CATGGGTTGACTTAGGCATACAGAGTTCATGCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCT
* *
31852223 AACATCAGACCGGATCGAGAGTT
257 AACATCAGACCGGACCAAGAGTT
31852246 GTGACAGCAG
Statistics
Matches: 237, Mismatches: 39, Indels: 7
0.84 0.14 0.02
Matches are distributed among these distances:
340 1 0.00
341 107 0.45
342 127 0.54
343 2 0.01
ACGTcount: A:0.23, C:0.26, G:0.27, T:0.24
Consensus pattern (341 bp):
GCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATT
CCCAGTCTAAGATCGGATCGGACCGAGCGTTGCGACAGCAGGATCGACAACACACAGGGGGACCG
AACCGATCCTCGACTTACGCATTCTACCTCTCTGACCGGCTGAACGCCCACACACTCATTTCATG
GGTTGACTTAGGCATACAGAGTTCATGCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAACA
TCAGACCGGACCAAGAGTTACAGCAGCAGGATCGATAGCATGCAGGGGGGACCGGGTCGATCCCC
GATTGAGCGCCCAAAT
Found at i:31852371 original size:183 final size:181
Alignment explanation
Indices: 31851969--31852382 Score: 458
Period size: 184 Copynumber: 2.3 Consensus size: 181
31851959 CCCAAATGCT
* * * * *
31851969 CGTTTCATGGGTTGACTTAGGCATACGGAGTTTATCCCCAGTCTAAGCATACGGAGTTTATTCCC
1 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT-TCCAGTCTAAGCATACGGAGTTCATTCCC
* * * * *
31852034 AGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCAGGATCGACAACAAGCAGGGGGGACCGGG
65 AGTCTAACATCAGACCGGACCGAGAGTTGCGACAGCAGGATCGACAAC-AGCAGGGGGGACCGGG
* * *
31852099 CCTATACCCGACTTACGCATTCTGCCTCTTCGACCGGCTGAACGTCCGCACACT
129 -CTAGACCCGACTTACGCATTCTGCCTCTTCGACCGGCTGAACGCCCGCACACC
* * * *
31852153 CATTTTGTGGGTTGGCTTAGGCATACGGTGTTCATTCCTAGTCTAAGCATATGGAGTTCATTCCC
1 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCC-AGTCTAAGCATACGGAGTTCATTCCC
* * ** *
31852218 AGTCTAACATCAGACCGGATCGAGAGTTGTGACAGCAGGATCAGTTATAC-GTA-GGGGGACCGG
65 AGTCTAACATCAGACCGGACCGAGAGTTGCGACAGCAGGATC-GACA-ACAGCAGGGGGGACCGG
* ** * *
31852281 G-TAGATCCGCAGCTTGTGCATTCTGCCTCTTCGGCCGGCT-AAGCGCCCGCACGCC
128 GCTAGACCCG-A-CTTACGCATTCTGCCTCTTCGACCGGCTGAA-CGCCCGCACACC
*
31852336 CGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG
1 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCA-GTCTAAG
31852383 ACCCAGCCGG
Statistics
Matches: 192, Mismatches: 31, Indels: 15
0.81 0.13 0.06
Matches are distributed among these distances:
181 6 0.03
182 4 0.02
183 88 0.46
184 90 0.47
185 2 0.01
186 2 0.01
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.25
Consensus pattern (181 bp):
CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAGTCTAAGCATACGGAGTTCATTCCCA
GTCTAACATCAGACCGGACCGAGAGTTGCGACAGCAGGATCGACAACAGCAGGGGGGACCGGGCT
AGACCCGACTTACGCATTCTGCCTCTTCGACCGGCTGAACGCCCGCACACC
Found at i:31852675 original size:158 final size:156
Alignment explanation
Indices: 31852199--31852690 Score: 521
Period size: 159 Copynumber: 3.1 Consensus size: 156
31852189 CCTAGTCTAA
* * * *
31852199 GCATATGGAGTTCATTCCCAGTCTAACATCAGACCGGATCGAGAGTTGTGACAGCAGGA-TCAGT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTG-CAGCAGGACTCAG-
* * * * *
31852263 TATAC-GTAGGGGGACCGGGTAGATCCGCAGCTTGTGCATTCTGCCTCT-TCGGCCGGCTAAGCG
64 CATGCAG-AGGGGGACCGGGTCGATCCCCAACTTGTGCATTCTGCCTCTCT-GGCCGGCTAAGCG
* *
31852326 CCCGCACGCCCGTTTCGTGGGTTGGCTTAG
127 CCCACACGCTCGTTTCGTGGGTTGGCTTAG
* * * * *
31852356 GCATAGGGAGTTCATT-CCATGTCTAAGACCCAG-CCGGACTGAGGGTTGTGGCAGCGGGACCGG
1 GCATACGGAGTTCATTCCCA-GTCTAAGA-TCAGACCGGACCGAGGGTTGT-GCAGCAGGA-C-T
* * ** * * *
31852419 CAGCATGCAGAGGGGGACCGGGCCGATCCCCGACTTACGCATTATGCCTCTCCGGCCGGCTCAGC
61 CAGCATGCAGAGGGGGACCGGGTCGATCCCCAACTTGTGCATTCTGCCTCTCTGGCCGGCTAAGC
* * *
31852484 GCCCGA-ACGCTCATTTCGTGGGTTGACTGAG
126 GCCC-ACACGCTCGTTTCGTGGGTTGGCTTAG
*
31852515 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTAGCAGCAGGATCTACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGT-GCAGCAGGA-CT-CA
* * * * *
31852580 GCATGCAG-GGGGGATCGGGTCGGTCCCCAACTTGTGCATTCTGCCTCTCTGACCGACTGAGCGC
63 GCATGCAGAGGGGGACCGGGTCGATCCCCAACTTGTGCATTCTGCCTCTCTGGCCGGCTAAGCGC
*
31852644 CCACGCGCTCGTTTCGTGGGTTGGCTTAG
128 CCACACGCTCGTTTCGTGGGTTGGCTTAG
31852673 GCATACGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
31852691 ATGTTTAAGC
Statistics
Matches: 274, Mismatches: 48, Indels: 25
0.79 0.14 0.07
Matches are distributed among these distances:
156 3 0.01
157 43 0.16
158 93 0.34
159 128 0.47
160 7 0.03
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.22
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGCAGCAGGACTCAGCA
TGCAGAGGGGGACCGGGTCGATCCCCAACTTGTGCATTCTGCCTCTCTGGCCGGCTAAGCGCCCA
CACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:31852725 original size:26 final size:26
Alignment explanation
Indices: 31852673--31852725 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
31852663 GTTGGCTTAG
* *
31852673 GCATACGGAGTTCATTCCATGTTTAA
1 GCATACGAAGTTCATTCCATGTCTAA
31852699 GCATACGAAGTTCATTCCCA-GTCTAA
1 GCATACGAAGTTCATT-CCATGTCTAA
31852725 G
1 G
31852726 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATGTCTAA
Found at i:31853707 original size:159 final size:158
Alignment explanation
Indices: 31853452--31853921 Score: 461
Period size: 159 Copynumber: 3.0 Consensus size: 158
31853442 ATAAGATCGG
* * * * * * *
31853452 ACCGGATCGAGGGTTGTGGCAGTAGGA-TGGCAGCACGTAG-GAGGGATCGGGTCATTCCCCGGC
1 ACCGGATCGAGGGTTGTGGCAGTGGGACCGACAGCATGTAGAGGGGGATCGGGCCA-TCCCCGAC
* * * * *
31853515 TTGCGCATTCTGCCTCTTCAGCTGGCTGAGCACCCGCAC-GCTTGTTTCATGGGTTGGCTTAGGC
65 TTGCGCATTATGCCTCATCAGCAGGCTCAGCACCCGCACGGC-CGTTTCATGGGTTGGCTTAGGC
31853579 ATAGAGAGTTCATTCCATGTCTAAGCCCCA
129 ATAGAGAGTTCATTCCATGTCTAAGCCCCA
* * * *
31853609 ATCGGATTGAGGGTTATGGCAGTGGGACCGACAGCATGTAGAGGGGGATCGGGCCGATCCCTGAC
1 ACCGGATCGAGGGTTGTGGCAGTGGGACCGACAGCATGTAGAGGGGGATCGGGCC-ATCCCCGAC
* * * *
31853674 TTGCGCCTTATGCCTCATCGGCAGGCTCAGCACCCGTACGGCCGTTTTATGGGTTGGCTTAGGCA
65 TTGCGCATTATGCCTCATCAGCAGGCTCAGCACCCGCACGGCCGTTTCATGGGTTGGCTTAGGCA
* *
31853739 TAGGGAGTTCATTCCATGTCTAAGCTCCA
130 TAGAGAGTTCATTCCATGTCTAAGCCCCA
* * * *
31853768 ACCGGATCGAGGGTTGTGGTAGCGGGACC-AGCAGCATGCAGAGGGGGATCGGGCCAATCCCCGG
1 ACCGGATCGAGGGTTGTGGCAGTGGGACCGA-CAGCATGTAGAGGGGGATCGGGCC-ATCCCCGA
** * * * * ** ** *
31853832 CTTAAGCATTACGCC-CCTCCGGTC-GACTCAGCGTCCGCACGTTCGTTTCATGGGTTGACTTAG
64 CTTGCGCATTATGCCTCAT-CAG-CAGGCTCAGCACCCGCACGGCCGTTTCATGGGTTGGCTTAG
*
31853895 GCATACG-GAGTTTATTCC-TAGTCTAAG
127 GCATA-GAGAGTTCATTCCAT-GTCTAAG
31853922 ATCGGACCAG
Statistics
Matches: 259, Mismatches: 45, Indels: 16
0.81 0.14 0.05
Matches are distributed among these distances:
157 23 0.09
158 14 0.05
159 217 0.84
160 5 0.02
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (158 bp):
ACCGGATCGAGGGTTGTGGCAGTGGGACCGACAGCATGTAGAGGGGGATCGGGCCATCCCCGACT
TGCGCATTATGCCTCATCAGCAGGCTCAGCACCCGCACGGCCGTTTCATGGGTTGGCTTAGGCAT
AGAGAGTTCATTCCATGTCTAAGCCCCA
Found at i:31853940 original size:159 final size:158
Alignment explanation
Indices: 31853716--31854119 Score: 441
Period size: 159 Copynumber: 2.5 Consensus size: 158
31853706 CCCGTACGGC
* * * ** * *
31853716 CGTTTTATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCTCCAACCGGATCGAGGG
1 CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCA-GTCTAAGATCGGACCGGACCAAGGG
* * * *
31853781 TTGTGGTAGCGGGACCAGCAGCATGCAGAGGGGGATCGGGCCAATCCCCGGCTTAAGCATTAC-G
65 TTGCGGTAGCAGGACCAGCAGCACGCAGAGGGGGATCGGGCCAATCCCCAGCTTAAGCATT-CTG
** ** * *
31853845 CCCCTCCGGTCGACTCAGCGTCCGCACGTT
129 CCCCTCCGACCGACTCAAAGCCCGCACGCT
* * *
31853875 CGTTTCATGGGTTGACTTAGGCATACGGAGTTTATTCCTAGTCTAAGATCGGACCAGACCAAGGG
1 CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCC-AGTCTAAGATCGGACCGGACCAAGGG
* * * * * * * *
31853940 TTGCAGCAGCAGGATCAACAGCACGCAGGGGGGGCTCGGGCCAGTCCCCAGCTTACGCATTCTGC
65 TTGCGGTAGCAGGACCAGCAGCACGCAGAGGGGGATCGGGCCAATCCCCAGCTTAAGCATTCTGC
* * * *
31854005 CTCTCCGACCGATTGAAAGCCCGCATGCT
130 CCCTCCGACCGACTCAAAGCCCGCACGCT
* * *
31854034 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTAAAGG
1 CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCAGTCTAAGATCGGACCGGACCAAGGG
*
31854099 TTACGGTAGCAGGACCAGCAG
65 TTGCGGTAGCAGGACCAGCAG
31854120 TAGGATCAAC
Statistics
Matches: 199, Mismatches: 43, Indels: 6
0.80 0.17 0.02
Matches are distributed among these distances:
158 1 0.01
159 195 0.98
160 3 0.02
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.22
Consensus pattern (158 bp):
CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAGTCTAAGATCGGACCGGACCAAGGGT
TGCGGTAGCAGGACCAGCAGCACGCAGAGGGGGATCGGGCCAATCCCCAGCTTAAGCATTCTGCC
CCTCCGACCGACTCAAAGCCCGCACGCT
Done.