Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 347 of 402
Found at i:31855458 original size:158 final size:156
Alignment explanation
Indices: 31855020--31855464 Score: 405
Period size: 159 Copynumber: 2.8 Consensus size: 156
31855010 GTTCCTAGTC
* * * ** * * *
31855020 TAAGATAGGATCGGATCGAGGGTTACGGTAGCAGGATCGGTAGCATGCAGGGGGGATCGGGCCGA
1 TAAGATCGGATCGGATCGAGGGTTGCGGCAG-AGGATCGACAGCACGCAGGGGGGACCGAGCCGA
** * * * * * *
31855085 TCCCCGACTTGTACATTCTACCTCTCCGGCCTGCTGAGCGCCCGCACGCCCGTTTT-ATGGGTTG
65 TCCCCG-CTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCTGCACGCTC-TTTTCATGGGTTA
* * * *
31855149 GCTTAGGCATAGGGAGTTCATTCCATGTC
128 ACTTAGGCATAGAGAGTTCATTCCATCTA
* ** * * * * * **
31855178 TAAG-CCCCAGCCGGATAGAGGGTTGTGGCAGCGAGACCGACAGCACGCAGAGGGGGACCGAATC
1 TAAGATCGGA-TCGGATCGAGGGTTGCGGCAGAG-GATCGACAGCACGCAG-GGGGGACCGAGCC
* * * *
31855242 GATCCCCGGCTTGCGCATTAC-GCATCTTCGGTCGGCTCAACGCCTGCACGCT-TGTTTCATGGG
63 GATCCCC-GCTTGCGCATT-CTGCCTCTCCGGTCGGCTGAGCGCCTGCACGCTCT-TTTCATGGG
* *
31855305 TTAACTTATGCATATAGAGTTCATTCCCA-CTA
125 TTAACTTAGGCATAGAGAGTTCATT-CCATCTA
* *
31855337 TAAGATCGGATCGGACCGAGGGTTGCGGCAGTAGGATCGACAGCACGCAGGGGGGACCGAGCCAA
1 TAAGATCGGATCGGATCGAGGGTTGCGGCAG-AGGATCGACAGCACGCAGGGGGGACCGAGCCGA
31855402 TCCCCAGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCTGCACGCTCTTTTCATGGGTT
65 TCCCC-GCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCTGCACGCTCTTTTCATGGGTT
31855465 GGCTTAGTTA
Statistics
Matches: 222, Mismatches: 53, Indels: 24
0.74 0.18 0.08
Matches are distributed among these distances:
157 4 0.02
158 101 0.45
159 109 0.49
160 8 0.04
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.22
Consensus pattern (156 bp):
TAAGATCGGATCGGATCGAGGGTTGCGGCAGAGGATCGACAGCACGCAGGGGGGACCGAGCCGAT
CCCCGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCTGCACGCTCTTTTCATGGGTTAACT
TAGGCATAGAGAGTTCATTCCATCTA
Found at i:31855499 original size:158 final size:155
Alignment explanation
Indices: 31855001--31855500 Score: 431
Period size: 158 Copynumber: 3.2 Consensus size: 155
31854991 GTCTACGCAA
* * * * * **
31855001 ATAGG-GTTCGTTCCTAGTCTAAGATAGGATCGGATCGAGGGTTACGGTAGCAGGATCGGTAGCA
1 ATAGGAGTTCATTCCTCGTCTAAGATCGGATCGGATCGAGGGTTGCGGCAG-AGGATCGACAGCA
* * * ** * * * *
31855065 TGCAGGGGGGATCGGGCCGATCCCCGACTTGTACATTCTACCTCTCCGGCCTGCTGAGCGCCCGC
65 CGCAGGGGGGACCGAGCCGATCCCCG-CTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCTGC
* **
31855130 ACGCCCGTTTT-ATGGGTTGGCTTAGGC
129 ACGCTC-TTTTCATGGGTTGGCTTAGAT
* ** * * * * *
31855157 ATAGGGAGTTCATTCCAT-GTCTAAG-CCCCAGCCGGATAGAGGGTTGTGGCAGCGAGACCGACA
1 ATA-GGAGTTCATTCC-TCGTCTAAGATCGGA-TCGGATCGAGGGTTGCGGCAGAG-GATCGACA
** * * * *
31855220 GCACGCAGAGGGGGACCGAATCGATCCCCGGCTTGCGCATTAC-GCATCTTCGGTCGGCTCAACG
62 GCACGCAG-GGGGGACCGAGCCGATCCCC-GCTTGCGCATT-CTGCCTCTCCGGTCGGCTGAGCG
**
31855284 CCTGCACGCT-TGTTTCATGGGTTAACTTATGCAT
124 CCTGCACGCTCT-TTTCATGGGTTGGCTTA-G-AT
* * *
31855318 ATA-GAGTTCATTCC-CACTATAAGATCGGATCGGACCGAGGGTTGCGGCAGTAGGATCGACAGC
1 ATAGGAGTTCATTCCTC-GTCTAAGATCGGATCGGATCGAGGGTTGCGGCAG-AGGATCGACAGC
*
31855381 ACGCAGGGGGGACCGAGCCAATCCCCAGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCTG
64 ACGCAGGGGGGACCGAGCCGATCCCC-GCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCTG
*
31855446 CACGCTCTTTTCATGGGTTGGCTTAGTT
128 CACGCTCTTTTCATGGGTTGGCTTAGAT
31855474 ATACGGAGTTCATTCCTCGTCTAAGAT
1 ATA-GGAGTTCATTCCTCGTCTAAGAT
31855501 TTTGAGCCAT
Statistics
Matches: 265, Mismatches: 58, Indels: 40
0.73 0.16 0.11
Matches are distributed among these distances:
156 7 0.03
157 7 0.03
158 134 0.51
159 108 0.41
160 6 0.02
161 3 0.01
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (155 bp):
ATAGGAGTTCATTCCTCGTCTAAGATCGGATCGGATCGAGGGTTGCGGCAGAGGATCGACAGCAC
GCAGGGGGGACCGAGCCGATCCCCGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCTGCAC
GCTCTTTTCATGGGTTGGCTTAGAT
Found at i:31856198 original size:26 final size:26
Alignment explanation
Indices: 31856169--31856247 Score: 115
Period size: 26 Copynumber: 3.0 Consensus size: 26
31856159 GTTGACTTAG
*
31856169 GCATACGGAGTTTATCCCTAGTCTAA
1 GCATACAGAGTTTATCCCTAGTCTAA
*
31856195 GCATACAGAGTTTACCCCTAGTCTAA
1 GCATACAGAGTTTATCCCTAGTCTAA
*
31856221 GCATACAGAGTTCAAT-CCTAGTCTAA
1 GCATACAGAGTT-TATCCCTAGTCTAA
31856247 G
1 G
31856248 ATCAGATCGG
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
26 47 0.98
27 1 0.02
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTTATCCCTAGTCTAA
Found at i:31858052 original size:159 final size:159
Alignment explanation
Indices: 31857699--31858238 Score: 477
Period size: 159 Copynumber: 3.4 Consensus size: 159
31857689 TCTCTGGTCA
** * * * *
31857699 GCTGAGCATCCGCACGCTCGTTTCATGGGTTGACTTAGGCATATGGAATTCATTCC-TAGTCTAA
1 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAA
* ** * * * * * ** * * *
31857763 GATCAGATCGGACCAAGGGTTACGA-CAGTAGGATCGGCAGCACGCA--TGGGGA-TCAGGCCGA
65 GACCCCACCAGACCGAGGGTT-CTAGCAGCAGGATCAACAGCACGTAGGAGGGGACT-GGGCCGA
31857824 TCCCCAACTTGCGCATTCTGCCTCTCCGACCG
128 TCCCCAACTTGCGCATTCTGCCTCTCCGACCG
* * * ** * *
31857856 GCTGAACGCCAGCATGC-CTGTTTTATGGGTTGGCTTAGGCATAGGGAGTTCATTCAATGTCTAA
1 GCTGAGCGCCCGCACGCTC-GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* * * * * **
31857920 -ACCCCAGCCGGACTGAGGGTTCTAGCAGCGGGATCGACAGCACGTA-GAGGGGGATTGGGTTGA
65 GACCCCA-CCAGACCGAGGGTTCTAGCAGCAGGATCAACAGCACGTAGGA-GGGGACTGGGCCGA
* ***
31857983 TCCCCAACTTGCGCATTATGCCTCTCCGGTTG
128 TCCCCAACTTGCGCATTCTGCCTCTCCGACCG
* * *
31858015 GCTTAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GCCTAA
1 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAA
**** * * * *
31858079 GATTGGACCAGACCGAGGGTTTTGGTAGCAGGATCAACAGCGCGTAGGAGGGGACTGGGCCGATC
65 GACCCCACCAGACCGAGGGTTCTAGCAGCAGGATCAACAGCACGTAGGAGGGGACTGGGCCGATC
* * * *
31858144 CCCGACTTACGCATTCTGCCTTTCCGCCCG
130 CCCAACTTGCGCATTCTGCCTCTCCGACCG
*
31858174 GCTGAGCGCCCGCACGCTCGTTCCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
1 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
31858239 CATACGGAGT
Statistics
Matches: 306, Mismatches: 65, Indels: 22
0.78 0.17 0.06
Matches are distributed among these distances:
156 6 0.02
157 78 0.25
158 4 0.01
159 210 0.69
160 8 0.03
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (159 bp):
GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
ACCCCACCAGACCGAGGGTTCTAGCAGCAGGATCAACAGCACGTAGGAGGGGACTGGGCCGATCC
CCAACTTGCGCATTCTGCCTCTCCGACCG
Found at i:31858936 original size:26 final size:26
Alignment explanation
Indices: 31858906--31858958 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
31858896 GTTGACTTAG
*
31858906 GCATATAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
31858932 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
31858958 G
1 G
31858959 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:31859403 original size:156 final size:154
Alignment explanation
Indices: 31858932--31859451 Score: 537
Period size: 158 Copynumber: 3.3 Consensus size: 154
31858922 CCCAGTCTAA
* * * * * * *
31858932 GCATACAGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGTGTTGC-AGCAGCAGGATCGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGACCGGATCGGACCGAGGGTTGCGA-CAGCAGGATTGAC
* * *
31858996 AGCATGCAGGGAGGACAGGGCCGATCCCCGACTTGCGCATTTTGCCTGTCCGACTGGCTGAACGG
65 AGCATGCAGGG-GGACA-GGCCGATCCCCGGCTTGCGCATTTTGCCTCTCCGACCGGCTG-A-GG
* * *
31859061 CCGCACGCCCGTTTCATGGGTTGGTTTAG
126 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
* ** * * * * *
31859090 GCATAGGGAGTTCATT-CCATGTCTAAG-CCCCAGTCAGACCGAGGGTTGTGGCAAC-GAGACTG
1 GCATACGGAGTTCATTCCCA-GTCTAAGACCGGA-TCGGACCGAGGGTTGCGACAGCAG-GATTG
* * * *
31859152 ACAGCATGCAGAGGGGGATCGGGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGACCGGCTCAG
63 ACAGCATGC--AGGGGGA-CAGGCCGATCCCCGGCTTGCGCATTTTGCCTCTCCGACCGGCTGAG
*
31859217 CGCCCGCACGCTCG-TTCGTGGGTTGACTTAG
125 -G-CCGCACGCTCGTTTCGTGGGTTGGCTTAG
31859248 GCATACGGAGTTCATTCCCAGTCTAAGACCGGATCGGACCGAGGGTTGCGACAGCAGGATTGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGACCGGATCGGACCGAGGGTTGCGACAGCAGGATTGACA
* * * * * *
31859313 GCACGCAGGGGGACCAGGCCGGTCCCTGGCTTGTGCATTTTGCCTCTCCGGCCGGCTGAGTGCTG
66 GCATGCAGGGGGA-CAGGCCGATCCCCGGCTTGCGCATTTTGCCTCTCCGACCGGCTGAG-GCCG
*
31859378 CACGCTCGTTTTGTGGGTTGGCTTAG
129 CACGCTCGTTTCGTGGGTTGGCTTAG
* * * *
31859404 TCATACGAAGTTCATTCCCAGTCTAAGATCGGATTGGACCGAGGGTTG
1 GCATACGGAGTTCATTCCCAGTCTAAGACCGGATCGGACCGAGGGTTG
31859452 TGGCCGTAGG
Statistics
Matches: 298, Mismatches: 51, Indels: 28
0.79 0.14 0.07
Matches are distributed among these distances:
155 10 0.03
156 105 0.35
157 7 0.02
158 115 0.39
159 56 0.19
160 5 0.02
ACGTcount: A:0.19, C:0.28, G:0.32, T:0.22
Consensus pattern (154 bp):
GCATACGGAGTTCATTCCCAGTCTAAGACCGGATCGGACCGAGGGTTGCGACAGCAGGATTGACA
GCATGCAGGGGGACAGGCCGATCCCCGGCTTGCGCATTTTGCCTCTCCGACCGGCTGAGGCCGCA
CGCTCGTTTCGTGGGTTGGCTTAG
Found at i:31859617 original size:26 final size:26
Alignment explanation
Indices: 31859588--31859640 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
31859578 GTTGACTTAG
31859588 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCAGTCCC-AGTCTAA
31859614 GCATACGGAGTTCAGTCCCAGTCTAA
1 GCATACGGAGTTCAGTCCCAGTCTAA
31859640 G
1 G
31859641 ATCCAACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCAGTCCCAGTCTAA
Found at i:31860683 original size:26 final size:26
Alignment explanation
Indices: 31860654--31860706 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
31860644 GTTGACTTAG
31860654 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
31860680 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
31860706 G
1 G
31860707 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:31861154 original size:158 final size:158
Alignment explanation
Indices: 31860680--31861169 Score: 536
Period size: 158 Copynumber: 3.1 Consensus size: 158
31860670 CCCAGTCTAA
* * * * * * * *
31860680 GCATATGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGATAGTAAGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGACAGCAGGATCGACA
** * * *
31860745 GCACGCAGGGGGGACCTA-TCCGATCCCTGGCTTGTGCATTCTGCCTCTCCGACCGGTTGAGCGC
66 GCACGCAGGGGGGACC-AGGGCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGC
* *
31860809 CCGCACGCCCGTTTCATGGGTTGGCTTAG
130 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * ** * * * *
31860838 GCATAGGGAGTTCATTCCAAGTCTAAGCCCCAG-CTGGACCGAGGGTTGTGGCAGCGGGACCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAG-ATCAGACCGGACCGAGGGTTGTGACAGCAGGATCGAC
** * ** * * * *
31860902 AGCTTGCAGAGGGGGATC-GGGCCGATCCCCAGCTTGCACATTATGCCTCTCCGGCCGGCTCAGT
65 AGCACGCAG-GGGGGACCAGGG-CGATCCCTGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGC
* *
31860966 GCCCGTACGCTCGTTTCGTGGGTTGACTTAG
128 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* *
31860997 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGACAGCAGGATCAACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGACAGCAGGATCGACA
* * * *
31861062 GCACGCAGGGGGGACCAGGGCGGTCCTTGGCTTGCGCATTCTGCCTCTCCGGTCGACTGAGCGCC
66 GCACGCAGGGGGGACCAGGGCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCC
*
31861127 CGCACGCTCATTTCGTGGGTTGGCTTAG
131 CGCACGCTCGTTTCGTGGGTTGGCTTAG
**
31861155 GCATACATAGTTCAT
1 GCATACGGAGTTCAT
31861170 CCATGTCTAA
Statistics
Matches: 265, Mismatches: 61, Indels: 12
0.78 0.18 0.04
Matches are distributed among these distances:
158 136 0.51
159 129 0.49
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGACAGCAGGATCGACA
GCACGCAGGGGGGACCAGGGCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCC
CGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:31862925 original size:26 final size:26
Alignment explanation
Indices: 31862877--31862927 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
31862867 TGGCTTAGGT
*
31862877 ATACGGAGTTCATTCCATGTCTAAGC
1 ATACGGAGTTCATTCCATATCTAAGC
31862903 ATACGGAGTTCATTCCCA-ATCTAAG
1 ATACGGAGTTCATT-CCATATCTAAG
31862928 AGTTTGAGCC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCATATCTAAGC
Found at i:31866092 original size:26 final size:26
Alignment explanation
Indices: 31866042--31866094 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
31866032 GTTGACTTAG
*
31866042 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* *
31866068 GCATACAGAGTTCATTCCTAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
31866094 G
1 G
31866095 ATCGAACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:31866548 original size:77 final size:77
Alignment explanation
Indices: 31866456--31866608 Score: 270
Period size: 77 Copynumber: 2.0 Consensus size: 77
31866446 GATAGCACGT
* *
31866456 AGGGGGGATCGGGCCAATCCCCGGCTTGTGCATTCTACCTCTCCGACCGGCTGAGCGACTGTATG
1 AGGGGGGATCGGGCCAATCCCCGGCTTGTGCATTCTACCTCTCCGACCGGCTGAGCGACCGCATG
31866521 CCCGCTTCGTGC
66 CCCGCTTCGTGC
* *
31866533 AGGGGGGATCGGGCCAATCCCCGGCTTGTGCATTCTACCTCTCCGACCGGTTGAGCGCCCGCATG
1 AGGGGGGATCGGGCCAATCCCCGGCTTGTGCATTCTACCTCTCCGACCGGCTGAGCGACCGCATG
31866598 CCCGCTTCGTG
66 CCCGCTTCGTG
31866609 GGTTGGCTTA
Statistics
Matches: 72, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
77 72 1.00
ACGTcount: A:0.12, C:0.35, G:0.31, T:0.22
Consensus pattern (77 bp):
AGGGGGGATCGGGCCAATCCCCGGCTTGTGCATTCTACCTCTCCGACCGGCTGAGCGACCGCATG
CCCGCTTCGTGC
Found at i:31867562 original size:158 final size:159
Alignment explanation
Indices: 31867292--31867726 Score: 516
Period size: 159 Copynumber: 2.7 Consensus size: 159
31867282 CGGACTGTGT
* ** * * * *
31867292 CGAGGGTTGCGGCAGCCAGATCGACAGCACGCAGA-GGGGACCAGGCTGATCCCTGACTTGCGCA
1 CGAGGGTTGTGGCAGCGGGACCAACAGCATGCAGAGGGGGACCGGGCTGATCCCTGACTTGCGCA
* * * * * * * * * *
31867356 TTCTGCCTCTCCGGCAGGCTGAGTGTCCGCACGCCCGTTTCGTTGGTTGGCTTAGGCAG-GGGAG
66 TTATGCCTCTCTGGCTGACTCAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCAGAGGGAG
* *
31867420 TTCATCCCATGTCTAAGCCCCAGTC-AGAC
131 TTCATCCCATGTATAAGCCCCAATCGA-AC
** * *
31867449 CGAGGGTTGTGGCAGCGGGACCAGTAGCATGCAGAGGGGGACCGGGCTAATCCCCGACTTGCGCA
1 CGAGGGTTGTGGCAGCGGGACCAACAGCATGCAGAGGGGGACCGGGCTGATCCCTGACTTGCGCA
* *
31867514 TTATGCCTCTCTGGCTGACTCAGCGCCCGCACGTTCATTTCATGGGTTGGCTTAGGCAGAGGGAG
66 TTATGCCTCTCTGGCTGACTCAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCAGAGGGAG
* ** *
31867579 TTCATTCCATGTATAAGCTGCAATCGAAT
131 TTCATCCCATGTATAAGCCCCAATCGAAC
* * * * *
31867608 CGAGGGTTGTGGTAGCGGGACCAACAGCATGCAGAGGGGGATCGGGCCGATCCCTGGCTTACGCA
1 CGAGGGTTGTGGCAGCGGGACCAACAGCATGCAGAGGGGGACCGGGCTGATCCCTGACTTGCGCA
* *
31867673 TTATGCCTCTCTGGCTGACTCAGCGCCCGCACGCTAATTTCGTGGGTTGACTTA
66 TTATGCCTCTCTGGCTGACTCAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTA
31867727 AGCATACGAA
Statistics
Matches: 233, Mismatches: 42, Indels: 4
0.84 0.15 0.01
Matches are distributed among these distances:
157 27 0.12
158 73 0.31
159 132 0.57
160 1 0.00
ACGTcount: A:0.18, C:0.28, G:0.32, T:0.22
Consensus pattern (159 bp):
CGAGGGTTGTGGCAGCGGGACCAACAGCATGCAGAGGGGGACCGGGCTGATCCCTGACTTGCGCA
TTATGCCTCTCTGGCTGACTCAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCAGAGGGAG
TTCATCCCATGTATAAGCCCCAATCGAAC
Found at i:31867769 original size:159 final size:159
Alignment explanation
Indices: 31867444--31867780 Score: 419
Period size: 159 Copynumber: 2.1 Consensus size: 159
31867434 AAGCCCCAGT
* ** *
31867444 CAGACCGAGGGTTGTGGCAGCGGGACCAGTAGCATGCAGAGGGGGACCGGGCTAATCCCCGACTT
1 CAGATCGAGGGTTGTGGCAGCGGGACCAACAGCATGCAGAGGGGGACCGGGCCAATCCCCGACTT
* * * * *
31867509 GCGCATTATGCCTCTCTGGCTGACTCAGCGCCCGCACGTTCATTTCATGGGTTGGCTTAGGCAGA
66 ACGCATTATGCCTCTCTGGCTGACTCAGCGCCCGCACGCTAATTTCATGGGTTGACTTAAGCAGA
* * * * *
31867574 GGGAGTTCATTCCATGTATAAGCTGCAAT
131 CGAACTTCATTCCATGTATAAGATGCAAC
* * * * *
31867603 C-GAATCGAGGGTTGTGGTAGCGGGACCAACAGCATGCAGAGGGGGATCGGGCCGATCCCTGGCT
1 CAG-ATCGAGGGTTGTGGCAGCGGGACCAACAGCATGCAGAGGGGGACCGGGCCAATCCCCGACT
* *
31867667 TACGCATTATGCCTCTCTGGCTGACTCAGCGCCCGCACGCTAATTTCGTGGGTTGACTTAAGCAT
65 TACGCATTATGCCTCTCTGGCTGACTCAGCGCCCGCACGCTAATTTCATGGGTTGACTTAAGCAG
*
31867732 ACGAACTTCATTCCCA-GTCTAAGAT-CAGAC
130 ACGAACTTCATT-CCATGTATAAGATGCA-AC
*
31867762 CAGATCGAGGGTTGCGGCA
1 CAGATCGAGGGTTGTGGCA
31867781 ACAGGATCGA
Statistics
Matches: 150, Mismatches: 24, Indels: 8
0.82 0.13 0.04
Matches are distributed among these distances:
158 3 0.02
159 143 0.95
160 4 0.03
ACGTcount: A:0.21, C:0.26, G:0.31, T:0.22
Consensus pattern (159 bp):
CAGATCGAGGGTTGTGGCAGCGGGACCAACAGCATGCAGAGGGGGACCGGGCCAATCCCCGACTT
ACGCATTATGCCTCTCTGGCTGACTCAGCGCCCGCACGCTAATTTCATGGGTTGACTTAAGCAGA
CGAACTTCATTCCATGTATAAGATGCAAC
Found at i:31867918 original size:26 final size:26
Alignment explanation
Indices: 31867889--31867940 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
31867879 TTACTTACGC
31867889 ATACGGAGTTCATT-CCATGTCTAAGA
1 ATACGGAGTTCATTCCCA-GTCTAAGA
31867915 ATACGGAGTTCATTCCCAGTCTAAGA
1 ATACGGAGTTCATTCCCAGTCTAAGA
31867941 TCGGACCGGA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.31, C:0.21, G:0.19, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGA
Found at i:31868304 original size:26 final size:26
Alignment explanation
Indices: 31868267--31868319 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
31868257 GTTGACTTAG
*
31868267 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
31868293 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
31868319 G
1 G
31868320 ATCGAACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:31868620 original size:159 final size:158
Alignment explanation
Indices: 31868421--31868795 Score: 403
Period size: 158 Copynumber: 2.4 Consensus size: 158
31868411 CGACTGAGTG
* * *
31868421 CCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAG-C
1 CCCGCACACTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCC-AGAC
** * * * * *
31868485 CAGACTGAGGGTTGTGGCAACGGGACAGGCAACACGCAGAGGGGGACCAGGTCGATCCGCGACTT
65 CAGACCAAGGGTTGTGGCAACAGGACAGACAACACACAG-GGGGGACCAGGCCGATCCCCGACTT
* *
31868550 GCACATTATGCCTCTTCAGCCTGCTCAGCA
129 GCACATTATGCCTCTTCAGCCAGCTAAGCA
* * * * * **
31868580 TCCGTACACTCGTTTCATGGGTTGCCTTATGCATACGGAGTTTATTCC-TAGTCTAAGATCAGAC
1 CCCGCACACTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCCCAGAC
* ** * *
31868644 CAGACCAAGGGTTGTGGCAGCAGGATTGACAACACATAGGGGGGACCAGGCCGATCCCCGGCTTG
65 CAGACCAAGGGTTGTGGCAACAGGACAGACAACACACAGGGGGGACCAGGCCGATCCCCGACTTG
* * * *
31868709 CGCATTCTGCCTCTTCGGCCAGCTAAGCG
130 CACATTATGCCTCTTCAGCCAGCTAAGCA
** * * * *
31868738 CCCGCATGCTCATTTCGTGGCTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGC
1 CCCGCACACTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
31868796 ATACGAAGTT
Statistics
Matches: 173, Mismatches: 40, Indels: 7
0.79 0.18 0.03
Matches are distributed among these distances:
158 93 0.54
159 80 0.46
ACGTcount: A:0.21, C:0.28, G:0.27, T:0.24
Consensus pattern (158 bp):
CCCGCACACTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAGACC
AGACCAAGGGTTGTGGCAACAGGACAGACAACACACAGGGGGGACCAGGCCGATCCCCGACTTGC
ACATTATGCCTCTTCAGCCAGCTAAGCA
Found at i:31868779 original size:158 final size:157
Alignment explanation
Indices: 31868363--31868794 Score: 447
Period size: 159 Copynumber: 2.7 Consensus size: 157
31868353 CGATAGCACG
* * * * *
31868363 CAGGGGGGACCAGGTC-AGTCCCCGGTTTACGCATTCTGCCTCTTCGGTCGACTGAGTGCCCGCA
1 CAGGGGGGACCAGGTCGA-TCCCCGGCTTGCGCATTCTGCCTCTTCGGCCG-CTAAGCGCCCGCA
* * * **
31868427 CGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCAGACTG
64 CGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCTAGCCAGACCA
* * *
31868492 AGGGTTGTGGCAACGGGACAGGCAACACG
129 AGGGTTGTGGCAACAGGACAGACAACACA
* * * * * * ** *
31868521 CAGAGGGGGACCAGGTCGATCCGCGACTTGCACATTATGCCTCTTCAGCCTGCTCAGCATCCGTA
1 CAG-GGGGGACCAGGTCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGCC-GCTAAGCGCCCGCA
* * * * *
31868586 CACTCGTTTCATGGGTTGCCTTATGCATACGGAGTTTATTCC-TAGTCTAAGATC-AGACCAGAC
64 CGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGACCTAG-CCAGAC
* **
31868649 CAAGGGTTGTGGCAGCAGGATTGACAACACA
127 CAAGGGTTGTGGCAACAGGACAGACAACACA
* * *
31868680 TAGGGGGGACCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGCCAGCTAAGCGCCCGCAT
1 CAGGGGGGACCAGGTCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGCC-GCTAAGCGCCCGCAC
* * * *
31868745 GCTCATTTCGTGGCTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAG
65 GCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
31868795 CATACGAAGT
Statistics
Matches: 218, Mismatches: 50, Indels: 12
0.78 0.18 0.04
Matches are distributed among these distances:
158 96 0.44
159 120 0.55
160 2 0.01
ACGTcount: A:0.20, C:0.28, G:0.28, T:0.24
Consensus pattern (157 bp):
CAGGGGGGACCAGGTCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGCCGCTAAGCGCCCGCACG
CTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCTAGCCAGACCAAG
GGTTGTGGCAACAGGACAGACAACACA
Found at i:31868797 original size:26 final size:26
Alignment explanation
Indices: 31868768--31868820 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
31868758 CTTGGCTTAG
31868768 GCATAC-AGAGTTCATT-CCATGTCTAA
1 GCATACGA-AGTTCATTCCCA-GTCTAA
31868794 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
31868820 G
1 G
31868821 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:31872015 original size:24 final size:26
Alignment explanation
Indices: 31871987--31872037 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
31871977 GTTGACTTAG
31871987 GCATAC-GAGTTCA-TCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
31872011 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
31872037 G
1 G
31872038 ATCAGACCGA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
24 6 0.24
25 7 0.28
26 12 0.48
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:31874855 original size:159 final size:158
Alignment explanation
Indices: 31874493--31874857 Score: 356
Period size: 159 Copynumber: 2.3 Consensus size: 158
31874483 CCCATTCTAA
* * * * * * * *
31874493 GCATACGAAGTTCATTCCTAGTCTAAGATCGGGCCAGACCGAGGGTTGTGGTAGTAGTATCAGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGTAGGATCAGCA
* ** * * * *
31874558 GCACGGAGGGGGGATTGGGCCAATCCCTGGCTTATGCATTCTACCTCTCCGACCGACTAAGCGCC
66 GCACGCAGGGGGGACCGGGCCAATCCCTCGCTTACGCATTATACCTCTCCGACCGACTAAGCACC
* * *
31874623 CGCATGCCCGTTTCATGGGTTGGCTTAG
131 CGCACGCCCATTTCATGGGTTGACTTAG
* ** ** * * *
31874651 GCATAGGGAGTTCATT-CCATGAGTAAGCCCCA-ACCGGATCGAGGGTTGTGGCAGTGGGATCGG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTGTGGCAGTAGGATCAG
* * * * ** *
31874714 CAGCACGCAGAGGGGGACCGGGCCGATCCCTCGCTTGCGCGTTATGCCTCTCCGGTCGACTCAGC
64 CAGCACGCAG-GGGGGACCGGGCCAATCCCTCGCTTACGCATTATACCTCTCCGACCGACTAAGC
* *
31874779 ACCCGTACGCTCATTTCATGGGTTGACTTAG
128 ACCCGCACGCCCATTTCATGGGTTGACTTAG
* *
31874810 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCAAGGGTTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTG
31874858 CAGCAGCAGG
Statistics
Matches: 159, Mismatches: 43, Indels: 9
0.75 0.20 0.04
Matches are distributed among these distances:
157 2 0.01
158 53 0.33
159 101 0.64
160 3 0.02
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGTAGGATCAGCA
GCACGCAGGGGGGACCGGGCCAATCCCTCGCTTACGCATTATACCTCTCCGACCGACTAAGCACC
CGCACGCCCATTTCATGGGTTGACTTAG
Found at i:31875002 original size:26 final size:26
Alignment explanation
Indices: 31874967--31875019 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31874957 GTTGGCTTAG
31874967 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
31874993 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
31875019 G
1 G
31875020 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:31876585 original size:159 final size:159
Alignment explanation
Indices: 31876086--31876670 Score: 464
Period size: 159 Copynumber: 3.7 Consensus size: 159
31876076 ACAGTAGGAT
* * * *
31876086 CGACAGCACGCAG-GGGGGA-TCAGGCCGACCCCCGACTTGCGCATTCTGCCTCTCCGGCC-GAT
1 CGACAGCACGCAGAGGGGGACTCAGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGACCAG-C
* * * **
31876148 TGAGCGCCCACATGCCCGTTTCGTGGGTTGGTTTAGGCATAGGGAGTTCATTCCATGTCTAAGCC
65 TCAGCACCCACACGCCCGTTTCGTGGGTTGACTTAGGCATAGGGAGTTCATTCCATGTCTAAGCC
* * *
31876213 CCAGCCAGA-TCAGGGTTGTGGCAAACGGGAC
130 CCAG-CAGACTGAGGGTTGTGGC-AGCGGGTC
* * * * *
31876244 CTG-CAGCACGTAGAGGGGGAC-CAGGTCGATCCCCGACTTACGCATTATGCCTCTTCGACTAGC
1 C-GACAGCACGCAGAGGGGGACTCAGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGACCAGC
* *** * ** * * ** * *
31876307 TCCGTGTCCGCACGTTCGTTTCATGGTTTGACTTTTGCATACGGAGTTC-TTTCATGTCT-A---
65 TCAGCACCCACACGCCCGTTTCGTGGGTTGACTTAGGCATAGGGAGTTCATTCCATGTCTAAGCC
* * ** * *
31876367 --AGCATACCGAGGGTTACGGCAGTAGGAT-
130 CCAGCAGACTGAGGGTTGTGGCAG-CGGGTC
** * * * * ** * * *
31876395 CGGTAGCACGCAGCGAGGGAC-CGGGCTGATCCTTGGCTTGCGCATTCTACCTCTCCGACCAGCT
1 CGACAGCACGCAGAGGGGGACTCAGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGACCAGCT
* *
31876459 AAGCACCCACACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCC
66 CAGCACCCACACGCCCGTTTCGTGGGTTGACTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCC
31876524 CAGCAGGACTGAGGGTTGTGGCAGCGGGTC
131 CAGCA-GACTGAGGGTTGTGGCAGCGGGTC
* * ***
31876554 CGACAGCACGCAGAGGGGGACTGA-GCCGATCCCCGGCTTGCGCATTATGCCTCTCCGATTGGCT
1 CGACAGCACGCAGAGGGGGACTCAGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGACCAGCT
* * * * * *
31876618 CATCACCCAAACGCTCATTTCGTGGGATGACTTAGGCATATGGAGTTCATTCC
66 CAGCACCCACACGCCCGTTTCGTGGGTTGACTTAGGCATAGGGAGTTCATTCC
31876671 CAATCTAAGA
Statistics
Matches: 318, Mismatches: 92, Indels: 33
0.72 0.21 0.07
Matches are distributed among these distances:
150 1 0.00
151 85 0.27
152 22 0.07
153 1 0.00
157 1 0.00
158 26 0.08
159 181 0.57
160 1 0.00
ACGTcount: A:0.19, C:0.29, G:0.29, T:0.23
Consensus pattern (159 bp):
CGACAGCACGCAGAGGGGGACTCAGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGACCAGCT
CAGCACCCACACGCCCGTTTCGTGGGTTGACTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCC
CAGCAGACTGAGGGTTGTGGCAGCGGGTC
Found at i:31877331 original size:159 final size:160
Alignment explanation
Indices: 31877098--31877545 Score: 434
Period size: 159 Copynumber: 2.8 Consensus size: 160
31877088 TTGCGACAGT
* * * * *
31877098 AGGATCGACAGCACGCAG-GGGGGATCGAGAC-GATCCCCGACTTGCGCATTCTGCCTCTCCGAT
1 AGGACCGATAGCACGCAGAGGGGGATCG-GGCTGATCCCCGGCTTGTGCATTCTGCCTCTCCGAT
* * * * *
31877161 CGGCTGAGCGCCCGCACTCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTCCATTCCATGTCTA
65 CGGCTTAGCGCCCGTACTCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
* *
31877226 AGCCCCAG-CCAGATCGAGGGTTGGGGTAGC
130 AGCCCCAGACCAGATCGAAGGTTGCGGTAGC
* * * *
31877256 -GGCCCCGATAGTACGCAGAGGGGGATCGGGCTGATCCCCGGCTTGTGCATTATGCCTCTCCG-G
1 AGG-ACCGATAGCACGCAGAGGGGGATCGGGCTGATCCCCGGCTTGTGCATTCTGCCTCTCCGAT
* * * * *
31877319 CTGGCTTAGCGCCTGTA-TGCTCATTTCGTGGGATGACTTAGGCATACGGAGTTCATTCCCA-AT
65 C-GGCTTAGCGCCCGTACT-CTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGT
**** *
31877382 CTAAG-GTTGGACCGGATCGAAGGTTGCGGTAGC
127 CTAAGCCCCAGACCAGATCGAAGGTTGCGGTAGC
* * * * *
31877415 AGGATCGATAGCACGTA-AGGGGGAATCGGG-TCGATTCTCGGCTTGTGCATTCTACCTCTCCGA
1 AGGACCGATAGCACGCAGAGGGGG-ATCGGGCT-GATCCCCGGCTTGTGCATTCTGCCTCTCCGA
* * *
31877478 TCGG-TTGAACGCCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
64 TCGGCTT-AGCGCCCGTACTCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
31877542 -AAGC
128 TAAGC
31877546 ATACAGAGTT
Statistics
Matches: 232, Mismatches: 43, Indels: 29
0.76 0.14 0.10
Matches are distributed among these distances:
157 2 0.01
158 31 0.13
159 193 0.83
160 6 0.03
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.24
Consensus pattern (160 bp):
AGGACCGATAGCACGCAGAGGGGGATCGGGCTGATCCCCGGCTTGTGCATTCTGCCTCTCCGATC
GGCTTAGCGCCCGTACTCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
GCCCCAGACCAGATCGAAGGTTGCGGTAGC
Found at i:31877751 original size:26 final size:26
Alignment explanation
Indices: 31877715--31877766 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
31877705 TTGGCTTAGA
31877715 CATACGGAGTTCATTCC-ATGTCTAAG
1 CATACGGAGTTCATTCCTA-GTCTAAG
*
31877741 CATACGTAGTTCATTCCTAGTCTAAG
1 CATACGGAGTTCATTCCTAGTCTAAG
31877767 ATTTTGCACC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.33
Consensus pattern (26 bp):
CATACGGAGTTCATTCCTAGTCTAAG
Found at i:31878459 original size:26 final size:26
Alignment explanation
Indices: 31878429--31878479 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
31878419 GTTAACTTAG
*
31878429 GCATACGAAGTTCATCCCCAGTCTAT
1 GCATACGAAGTTCATCCCCAATCTAT
* *
31878455 GCATACGGAGTTCATTCCCAATCTA
1 GCATACGAAGTTCATCCCCAATCTA
31878480 AGATCAAATC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.29, G:0.16, T:0.27
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAT
Found at i:31878967 original size:26 final size:26
Alignment explanation
Indices: 31878931--31878983 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
31878921 GTTGGCTTAG
31878931 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
31878957 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
31878983 G
1 G
31878984 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:31879686 original size:159 final size:159
Alignment explanation
Indices: 31879294--31879697 Score: 417
Period size: 159 Copynumber: 2.5 Consensus size: 159
31879284 CACAGGCCCA
* * *
31879294 TTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTACA-CCCCAACTGGACCGAGGGT
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA-AGCCCCAACCGGACCGAGGGT
* * *
31879358 TGTGGCAGCGGGATCGACATCATGCAGAGGGGGACCGGGCTGATCCCCGACTTGCGCATTATGCC
65 TGTGGCAGCAGGATCGACAGCATGCAGAGGGGGACCGGGCTGATCCCCGACTTACGCATTATGCC
*
31879423 TCTCCAACTGGCTTAGCACCTGAACGCTCG
130 TCTCCAACTGGCTTAGCACCCGAACGCTCG
* * * * ** * *
31879453 TTTCGTGGGTTGACTTAGGCAAACAGAGTTCATTCCCA-ATCTAAG-ATCAGACCAGACCGAGAG
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCA-ACCGGACCGAGGG
* * * * * ** * * *
31879516 TTGCGGTAGCAGGATCGATAGCATGCAG-GAGGGGACCGAG-TCGGTCCTTGGCTTACGTATTCT
64 TTGTGGCAGCAGGATCGACAGCATGCAGAG-GGGGACCGGGCT-GATCCCCGACTTACGCATTAT
* * * *
31879579 TCCTCTCCGA-TCGG-TTGAGCACCCGCATGCTCG
127 GCCTCTCCAACT-GGCTT-AGCACCCGAACGCTCG
*
31879612 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCAAGGGTT
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTT
*
31879677 GTGGCAGCAGGACCGACAGCA
66 GTGGCAGCAGGATCGACAGCA
31879698 GGATCGGTAA
Statistics
Matches: 194, Mismatches: 42, Indels: 18
0.76 0.17 0.07
Matches are distributed among these distances:
158 11 0.06
159 178 0.92
160 5 0.03
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (159 bp):
TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTT
GTGGCAGCAGGATCGACAGCATGCAGAGGGGGACCGGGCTGATCCCCGACTTACGCATTATGCCT
CTCCAACTGGCTTAGCACCCGAACGCTCG
Found at i:31879843 original size:26 final size:26
Alignment explanation
Indices: 31879813--31879865 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
31879803 GTTGACTTAG
*
31879813 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
31879839 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
31879865 G
1 G
31879866 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:31880348 original size:26 final size:26
Alignment explanation
Indices: 31880312--31880364 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
31880302 GTTGACTTAG
*
31880312 GCATGCGGAGTT-AATCCACAGTCTAA
1 GCATACGGAGTTCAATCC-CAGTCTAA
*
31880338 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCAATCCCAGTCTAA
31880364 G
1 G
31880365 ATCAAACAAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.28, C:0.25, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCAATCCCAGTCTAA
Found at i:31881087 original size:26 final size:26
Alignment explanation
Indices: 31881049--31881101 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
31881039 GTTGACTTAG
* *
31881049 GCATACGGTGTTCA-TCTCCAGTCTAA
1 GCATACCGAGTTCATTC-CCAGTCTAA
31881075 GCATACCGAGTTCATTCCCAGTCTAA
1 GCATACCGAGTTCATTCCCAGTCTAA
31881101 G
1 G
31881102 ATCAGATCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACCGAGTTCATTCCCAGTCTAA
Found at i:31881775 original size:26 final size:26
Alignment explanation
Indices: 31881746--31881798 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
31881736 GTTGACTTAG
*
31881746 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
31881772 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
31881798 G
1 G
31881799 ATCAAATAGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:31882228 original size:26 final size:26
Alignment explanation
Indices: 31882192--31882244 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31882182 GTTGGCTTAG
31882192 GCATAAGGAGTTCATT-CCATGTCTAA
1 GCATAAGGAGTTCATTCCCA-GTCTAA
*
31882218 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAGTCTAA
31882244 G
1 G
31882245 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCCAGTCTAA
Found at i:31882431 original size:26 final size:26
Alignment explanation
Indices: 31882401--31882453 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
31882391 GTTGACTTAG
*
31882401 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
31882427 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
31882453 G
1 G
31882454 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:31882755 original size:650 final size:640
Alignment explanation
Indices: 31881520--31882765 Score: 1513
Period size: 650 Copynumber: 1.9 Consensus size: 640
31881510 CGGTTGAGCG
*
31881520 CCCGCACGCTCGTTTCATGGATTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCATACAGA
1 CCCGCACGCTCGTTTCATGGATTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCATACAGA
* * **
31881585 GTTCATTCCCAGTCTAAGATCAGGCCGGATCGAGGGTTGCGGTAGCAGGACCAACAACAGGATCG
66 GTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTCACGGTAGCAGGACCAACAACAGGATCG
* * * **
31881650 ACAGCATGCAAGGGGGACCTAACCGATCCCCGACTTGCGCATTATGCCTCTCCGATTGGCTGAGC
131 ACAGCATGCAAGGGGGACCGAACCGATCCCCGACTTGCACATTATGCCTCTCCAACCGGCTGAGC
** * * *
31881715 GCCCGTACGCACGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAG
196 GCCCACACACACGTTCCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAG
* * * *
31881780 AGTTCATTCCCAGTCTAAGATCAAATAGACCGAAGGTTGCGGCAGCAGGATCGATAGCACGATGG
261 AGTTCATTCCCAGTCTAAGATCAAACAGACCGAAGGTTGCGGCAGCAAGATCGACAGCACGAGGG
* * *
31881845 GGGATCGGGCTGATCCCCGACTTACGCATTCTGCCTCTTCGATCTACTGAGTGCCAGCATGCCTG
326 GGGATCAGGCTGATCCCCGACTTACGCATTCTGCCTCTCCGATCTACT--GTGCCAGCACGCCTG
* *
31881910 TTTCGTGGCTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAACCGGATCGAGGGTT
389 TTTCGTGGCTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCAAGGGTT
* ** * * * *
31881975 GTGGTAGCGGGATCGGCAGCATGCAGAGGGGGACCGAACCGATCCTCGGCTTGCGTATTATGCCT
454 GTGGCAGCGGGATCGGCAGCACACAGAAGGGGACCGAACCGATCCTCAGCTTGCGCACTATGCCT
* * * *
31882040 CTTCGATCGACTCAGCTCCCGAACGTACGTTTCGTAGGTTGACTTAGGCATACGAAGTTCATTCC
519 CTCCGACCGACTCAGCGCCCGAACGTACGTTTCATAGGTTGACTTAGGCATACGAAGTTCATTCC
31882105 CAGTCTAAGATCGGATTGGATCAAGGGTTACGGTAGCAGGATCGACAGCACTCGATC
584 CAGTCTAAGATCGGATTGGATCAAGGGTTACGGTAGCAGGATCGACAGCACTCGATC
* * *
31882162 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCATACGGA
1 CCCGCACGCTCGTTTCATGGATTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCATACAGA
* * *
31882227 GTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTCACGGTAGTAGGACCATCAGCAGGATCG
66 GTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTCACGGTAGCAGGACCAACAACAGGATCG
* * * * ** *
31882292 ATAGCATGTAGGGGGGATCGAGTCGATCCCCGGCTTGCACATTTTACCTCTCTGGCCGGCTTCTC
131 ACAGCATGCAAGGGGGACCGAACCGATCCCCGACTTGCACA--TTA------T-G-C--C-TCTC
* * * *
31882357 CAACCGGTTGAGCTCCCACATACTCGTTCCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAG
183 CAACCGGCTGAGCGCCCACACACACGTTCCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAG
* * * * * * * *
31882422 TCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTTCGGTAGTAAGAT
248 TCTAAGCATACAGAGTTCATTCCCAGTCTAAGATC-AAACAGACCGAAGGTTGCGGCAGCAAGAT
* * * *
31882487 CGACAGCACGCAGGGGGGATCAGGCTGATCCCTGGCTTGCGCATTCTGCCTCTCCGA-C-CCT-T
312 CGACAGCACG-AGGGGGGATCAGGCTGATCCCCGACTTACGCATTCTGCCTCTCCGATCTACTGT
* * * * *
31882549 -CCA-TACG-CTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCTATGTCTAAGCCCCAG
376 GCCAGCACGCCT-GTTTCGTGGCTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAA
* * * *
31882611 CCGGACCAAGGGTTGTGGCAGTGGGATCGGCAGCACACAGAAGGGGATCGAGCTGATCC-CTAGC
440 CCGGACCAAGGGTTGTGGCAGCGGGATCGGCAGCACACAGAAGGGGACCGAACCGATCCTC-AGC
* * * * *
31882675 TTGCGCACTATGCCTCTCCGGCC-AGCTTAGCGCCC-ACATGCT-TGTTTCATGGGTTGACTTAG
504 TTGCGCACTATGCCTCTCCGACCGA-CTCAGCGCCCGA-ACG-TACGTTTCATAGGTTGACTTAG
*
31882737 GCATACGGAGTTCATTCCCAGTCTAAGAT
566 GCATACGAAGTTCATTCCCAGTCTAAGAT
31882766 TGGACCAGAC
Statistics
Matches: 505, Mismatches: 79, Indels: 32
0.82 0.13 0.05
Matches are distributed among these distances:
642 151 0.30
644 3 0.01
649 5 0.01
650 175 0.35
651 5 0.01
652 2 0.00
654 1 0.00
655 94 0.19
656 29 0.06
657 40 0.08
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.24
Consensus pattern (640 bp):
CCCGCACGCTCGTTTCATGGATTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCATACAGA
GTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTCACGGTAGCAGGACCAACAACAGGATCG
ACAGCATGCAAGGGGGACCGAACCGATCCCCGACTTGCACATTATGCCTCTCCAACCGGCTGAGC
GCCCACACACACGTTCCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAG
AGTTCATTCCCAGTCTAAGATCAAACAGACCGAAGGTTGCGGCAGCAAGATCGACAGCACGAGGG
GGGATCAGGCTGATCCCCGACTTACGCATTCTGCCTCTCCGATCTACTGTGCCAGCACGCCTGTT
TCGTGGCTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCAAGGGTTGT
GGCAGCGGGATCGGCAGCACACAGAAGGGGACCGAACCGATCCTCAGCTTGCGCACTATGCCTCT
CCGACCGACTCAGCGCCCGAACGTACGTTTCATAGGTTGACTTAGGCATACGAAGTTCATTCCCA
GTCTAAGATCGGATTGGATCAAGGGTTACGGTAGCAGGATCGACAGCACTCGATC
Found at i:31882783 original size:159 final size:151
Alignment explanation
Indices: 31882427--31882817 Score: 367
Period size: 159 Copynumber: 2.5 Consensus size: 151
31882417 CCCAGTCTAA
* * *
31882427 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTTCGGTAGTAAGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTTCGGCAGTAAGATCGACA
* * * * * *
31882492 GCACGCAGGGGGGATCAGGCTGATCCCTGGCTTGCGCATTCTGCCTCTCCGACCCTTCCATACGC
66 GCACACAGAGGGGATCAGGCTGATCCCTAGCTTGCGCACTATGCCTCTCCGACCCTTCCACACGC
* *
31882557 TCGTTTCGTGGGTTGGCTTAG
131 TCGTTTCATGGGTTGACTTAG
* * * ** * **
31882578 GCATAGGGAGTTCATT-CTATGTCTAAG-CCCCAGCCGGACCAAGGGTTGT-GGCAGTGGGATCG
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGA-CCGGACCGAGGGTT-TCGGCAGTAAGATCG
* *
31882640 GCAGCACACAGAAGGGGATC-GAGCTGATCCCTAGCTTGCGCACTATGCCTCTCCGGCCAGCTTA
63 ACAGCACACAG-AGGGGATCAG-GCTGATCCCTAGCTTGCGCACTATGCCTCTCCGACC--CTT-
* *
31882704 GCGCCCACATGCTTGTTTCATGGGTTGACTTAG
123 ----CCACACGCTCGTTTCATGGGTTGACTTAG
* * * * * *
31882737 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTACGACAGTAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTTCGGCAGTAAGATCGACA
* *
31882802 GCACGCAGGGGGGATC
66 GCACACAGAGGGGATC
31882818 GGGCCGGTCC
Statistics
Matches: 187, Mismatches: 38, Indels: 23
0.75 0.15 0.09
Matches are distributed among these distances:
150 4 0.02
151 53 0.28
152 40 0.21
154 3 0.02
158 7 0.04
159 77 0.41
160 3 0.02
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.23
Consensus pattern (151 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTTCGGCAGTAAGATCGACA
GCACACAGAGGGGATCAGGCTGATCCCTAGCTTGCGCACTATGCCTCTCCGACCCTTCCACACGC
TCGTTTCATGGGTTGACTTAG
Found at i:31883333 original size:26 final size:26
Alignment explanation
Indices: 31883303--31883355 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
31883293 GTTAACTTAG
*
31883303 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* *
31883329 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
31883355 G
1 G
31883356 ATCTAACTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:31884223 original size:26 final size:26
Alignment explanation
Indices: 31884187--31884239 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
31884177 CTTGACTTAG
*
31884187 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* *
31884213 GCATATGAAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
31884239 G
1 G
31884240 ATCGGATAGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:31884577 original size:159 final size:158
Alignment explanation
Indices: 31884404--31884755 Score: 366
Period size: 158 Copynumber: 2.2 Consensus size: 158
31884394 TAAGCCCCAG
* * * * ** ***
31884404 CCGAACTGAGGGTTGTGGTAGTGGGACCAGCAGCACGCAGAGGGGGATTGGGTCGATCCCTGGCT
1 CCGAACCGAGGGTTGCGATAGTAGGACCAGCAGCACGCAG-GGGGGACCGGGTCGATCCCCAACT
* * * ** *
31884469 TGCACATTATGCCTC-TCTGGTCGGCTCAGTGCCCAAACGCTCATTTCGTGGGTTGACTTAGGCA
65 TGCACATTAGGCCTCTTC-GGCCGGCTAAGCACCCAAACGCTCATTTCATGGGTTGACTTAGGCA
31884533 TACGAAATTCATTCCCAGTCTAAAATCAGA
129 TACGAAATTCATTCCCAGTCTAAAATCAGA
* * *
31884563 CCGAACCGAGGGTTGCGATAGCAGGATC-GACAGCACGCAGGGGGGACCGGGTCGGTCCCCAACT
1 CCGAACCGAGGGTTGCGATAGTAGGACCAG-CAGCACGCAGGGGGGACCGGGTCGATCCCCAACT
** ** * * *
31884627 TGTGCATTAGGCCTCTTCGGCCGGCTAAGCACCCGTACGTTCGTTTCATGGGTTGGCTTAGGCAT
65 TGCACATTAGGCCTCTTCGGCCGGCTAAGCACCCAAACGCTCATTTCATGGGTTGACTTAGGCAT
* * * *
31884692 ACGGAGTTCATTCCCAGTCTAAGATCGGA
130 ACGAAATTCATTCCCAGTCTAAAATCAGA
* * * *
31884721 CTGGATCGAGGGTTGCGATAGTAGGACTAGCAGCA
1 CCGAACCGAGGGTTGCGATAGTAGGACCAGCAGCA
31884756 AGATTGACAG
Statistics
Matches: 155, Mismatches: 35, Indels: 7
0.79 0.18 0.04
Matches are distributed among these distances:
158 120 0.77
159 35 0.23
ACGTcount: A:0.21, C:0.25, G:0.31, T:0.23
Consensus pattern (158 bp):
CCGAACCGAGGGTTGCGATAGTAGGACCAGCAGCACGCAGGGGGGACCGGGTCGATCCCCAACTT
GCACATTAGGCCTCTTCGGCCGGCTAAGCACCCAAACGCTCATTTCATGGGTTGACTTAGGCATA
CGAAATTCATTCCCAGTCTAAAATCAGA
Found at i:31884908 original size:26 final size:26
Alignment explanation
Indices: 31884871--31884975 Score: 167
Period size: 26 Copynumber: 4.0 Consensus size: 26
31884861 GTTGACTTAG
*
31884871 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
31884897 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
31884923 GCATACGAAGTTCA-TCCGCAGTCTAA
1 GCATACGAAGTTCATTCC-CAGTCTAA
*
31884949 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
31884975 G
1 G
31884976 ATCAGACCAA
Statistics
Matches: 73, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
25 2 0.03
26 68 0.93
27 3 0.04
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:31885992 original size:26 final size:26
Alignment explanation
Indices: 31885955--31886008 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
31885945 GGGTTGACTT
31885955 AGCATACAGAGTTCATCCCCAGTCTA
1 AGCATACAGAGTTCATCCCCAGTCTA
* * *
31885981 AGCATACGGAGTTCATTCCCATTCTA
1 AGCATACAGAGTTCATCCCCAGTCTA
31886007 AG
1 AG
31886009 ATCAGATTGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
AGCATACAGAGTTCATCCCCAGTCTA
Found at i:31886333 original size:26 final size:26
Alignment explanation
Indices: 31886299--31886350 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
31886289 TTTGCTTACA
*
31886299 CATATGGAGTTCATT-CCATGTCTAAG
1 CATACGGAGTTCATTCCCA-GTCTAAG
31886325 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
31886351 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAG
Found at i:31887239 original size:26 final size:26
Alignment explanation
Indices: 31887202--31887254 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
31887192 GTTGGATTAG
31887202 GCATACGAAGTTCATTCC-ATGTCTAA
1 GCATACGAAGTTCATTCCTA-GTCTAA
31887228 GCATAC-AGAGTTCATTCCTAGTCTAA
1 GCATACGA-AGTTCATTCCTAGTCTAA
31887254 G
1 G
31887255 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 1 0.04
26 23 0.92
27 1 0.04
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCTAGTCTAA
Found at i:31887396 original size:32 final size:32
Alignment explanation
Indices: 31887355--31887458 Score: 199
Period size: 32 Copynumber: 3.2 Consensus size: 32
31887345 CTACCTCTAC
31887355 GGTTGGCTGAGCACCCGCACGCTCGTTTTGTG
1 GGTTGGCTGAGCACCCGCACGCTCGTTTTGTG
31887387 GGTTGGCTGAGCACCCGCACGCTCGTTTTGTG
1 GGTTGGCTGAGCACCCGCACGCTCGTTTTGTG
*
31887419 GGTTGGCTGAGCACCCTCACGCTCGTTTTGTG
1 GGTTGGCTGAGCACCCGCACGCTCGTTTTGTG
31887451 GGTTGGCT
1 GGTTGGCT
31887459 TAAGCATACG
Statistics
Matches: 71, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
32 71 1.00
ACGTcount: A:0.09, C:0.27, G:0.35, T:0.30
Consensus pattern (32 bp):
GGTTGGCTGAGCACCCGCACGCTCGTTTTGTG
Found at i:31887686 original size:26 final size:26
Alignment explanation
Indices: 31887646--31887698 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
31887636 GGTGACTTAG
*
31887646 GCATATGGAGGTCATCCCCAGTCTAA
1 GCATAGGGAGGTCATCCCCAGTCTAA
* *
31887672 GCATAGGGAGTTCATTCCCAGTCTAA
1 GCATAGGGAGGTCATCCCCAGTCTAA
31887698 G
1 G
31887699 ATCGAACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.25
Consensus pattern (26 bp):
GCATAGGGAGGTCATCCCCAGTCTAA
Found at i:31887861 original size:26 final size:26
Alignment explanation
Indices: 31887830--31887882 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31887820 GTTGACTTAG
31887830 GCATAC-AGAGTTCATGCCCAGTCTAA
1 GCATACGA-AGTTCATGCCCAGTCTAA
*
31887856 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATGCCCAGTCTAA
31887882 G
1 G
31887883 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATGCCCAGTCTAA
Found at i:31888017 original size:26 final size:26
Alignment explanation
Indices: 31887988--31888040 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
31887978 GTTGACTTAG
31887988 GCATACGGAGTTTATCCCCAGTCTAA
1 GCATACGGAGTTTATCCCCAGTCTAA
* *
31888014 GCATATGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTTATCCCCAGTCTAA
31888040 G
1 G
31888041 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTTATCCCCAGTCTAA
Found at i:31888203 original size:26 final size:26
Alignment explanation
Indices: 31888173--31888228 Score: 80
Period size: 26 Copynumber: 2.2 Consensus size: 26
31888163 GTTGGCTTAG
31888173 GCATACGG-TGTTCATTCCCAGTCTAA
1 GCATACGGAT-TTCATTCCCAGTCTAA
*
31888199 GCATATGGATTTCATTCCCAGTCTAA
1 GCATACGGATTTCATTCCCAGTCTAA
31888225 -CATA
1 GCATA
31888229 AGACCGAATC
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
25 4 0.14
26 23 0.82
27 1 0.04
ACGTcount: A:0.27, C:0.25, G:0.16, T:0.32
Consensus pattern (26 bp):
GCATACGGATTTCATTCCCAGTCTAA
Found at i:31888279 original size:342 final size:342
Alignment explanation
Indices: 31887623--31888245 Score: 829
Period size: 342 Copynumber: 1.8 Consensus size: 342
31887613 GCTCTCGCAC
** *
31887623 GCTCGTTTTGTGGGGTGACTTAGGCATATGGAGGTCATCCCCAGTCTAAGCATAGGGAGTTCATT
1 GCTCGTTTCATGGGGTGACTTAGGCATACGGAGGTCATCCCCAGTCTAAGCATAGGGAGTTCATT
* ** *
31887688 CCCAGTCTAAGATCGAACCGGACCGAGCGTTGCGACAGCAGGATCGGTAGCACACAGGGGGTCCG
66 CCCAGTCTAAGATCGAACCGGACCAAGCGTTGCGACAGCAGGATCGACAGCACACAGGGGGACCG
* * * * * * **
31887753 AACCGATCCTCGACTTATGCATTCTACCTCTTTGATCGGCTGAGCGTTCCACACGCTTGTTTCAT
131 AACCGATCCTCGACTTACGCATTCTACCTCTTCGACCGGCTGAACGTCCCACACACTCATTTCAT
*
31887818 GGGTTGACTTAGGCATACAGAGTTCATGCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAG
196 GGGTTGACTTAGGCATACAGAGTTCATGCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAC
* * * *
31887883 ATCAGACCGGACCGAGGGTTACAGCAGCAGGATCGATAGCATGCAGGGGGGACCGGGTCGATCCC
261 ATAAGACCGAACCGAGGGTTACAGCAGCAGGATCGATAGCACGCAGGGGGGACCGGGTAGATCCC
31887948 CGATTGAGCGCCCAAAT
326 CGATTGAGCGCCCAAAT
* * * * *
31887965 GCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTTATCCCCAGTCTAAGCATATGGAGTTTATT
1 GCTCGTTTCATGGGGTGACTTAGGCATACGGAGGTCATCCCCAGTCTAAGCATAGGGAGTTCATT
* * *
31888030 CCCAGTCTAAGATC-AGACCGGACCAAGGGTTGTGACAGCAGGATCGACAGCACGCAGGGGGGGA
66 CCCAGTCTAAGATCGA-ACCGGACCAAGCGTTGCGACAGCAGGATCGACAGCACACA--GGGGGA
** * *
31888094 CCGGGCCTATACC-CGACTTACGCATTCTACCTCTTCGACCGGCTGAACG-CCCGCACACTCATT
128 CCGAACCGAT-CCTCGACTTACGCATTCTACCTCTTCGACCGGCTGAACGTCCCACACACTCATT
* * * * * * *
31888157 TCATGGGTTGGCTTAGGCATACGGTGTTCATTCCCAGTCTAAGCATATGGATTTCATTCCCAGTC
192 TCATGGGTTGACTTAGGCATACAGAGTTCATGCCCAGTCTAAGCATACGAAGTTCATTCCCAGTC
*
31888222 TAACATAAGACCGAATCGAGGGTT
257 TAACATAAGACCGAACCGAGGGTT
31888246 GCGATAGCAG
Statistics
Matches: 239, Mismatches: 38, Indels: 7
0.84 0.13 0.02
Matches are distributed among these distances:
341 1 0.00
342 105 0.44
343 87 0.36
344 44 0.18
345 2 0.01
ACGTcount: A:0.23, C:0.26, G:0.27, T:0.24
Consensus pattern (342 bp):
GCTCGTTTCATGGGGTGACTTAGGCATACGGAGGTCATCCCCAGTCTAAGCATAGGGAGTTCATT
CCCAGTCTAAGATCGAACCGGACCAAGCGTTGCGACAGCAGGATCGACAGCACACAGGGGGACCG
AACCGATCCTCGACTTACGCATTCTACCTCTTCGACCGGCTGAACGTCCCACACACTCATTTCAT
GGGTTGACTTAGGCATACAGAGTTCATGCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAC
ATAAGACCGAACCGAGGGTTACAGCAGCAGGATCGATAGCACGCAGGGGGGACCGGGTAGATCCC
CGATTGAGCGCCCAAAT
Found at i:31888663 original size:158 final size:160
Alignment explanation
Indices: 31888270--31888693 Score: 441
Period size: 158 Copynumber: 2.7 Consensus size: 160
31888260 AGTTATACGT
* * * * * *
31888270 AGGGGGACCGTGTAGATCCTCAGCTTGTGCATTTTGCCTCTTCGGCCGGCTAAGCGCCCACACGC
1 AGGGGGATCGAGTCGATCCCCAGCTTGTGCATTTTGCCTCTCCGGCCGGCTAAGCGCCCGCACGC
* * *
31888335 CCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAACACCCAGCCAGACTGAG
66 TCATTTCGTGGGTTGGCTGAGGCATACGGAGTTCATTCCCATGTCTAACACCCAGCCAGACTGAG
* ** **
31888399 GGTTGTGGCAGTGGGATCGGTAGCACGCAG
131 GGTTGTAGCAGCAGGATCGACAGCACGCAG
* ** * * * *
31888429 AGGGGGATCGGGTCGATCCCC-GACTTACGCATTATGCCTCTCCGGTCGGCTCAGCGCCCGAACG
1 AGGGGGATCGAGTCGATCCCCAG-CTTGTGCATTTTGCCTCTCCGGCCGGCTAAGCGCCCGCACG
* * * * *
31888493 -TCGTTTCATGGGTTGACTGAGGCATACGGAGTTCATTCCCA-GTCTAAGA-TCAGACCAGACTG
65 CTCATTTCGTGGGTTGGCTGAGGCATACGGAGTTCATTCCCATGTCTAACACCCAG-CCAGACTG
* *
31888555 AGGGTTGTAGCAGCAGGATCTACAGCATGCAG
129 AGGGTTGTAGCAGCAGGATCGACAGCACGCAG
* * * * ** * *
31888587 -GGGGGATCGAGTGGGTCCCCAGCTTGTGCATTTTACCTCTCCGACCAACTGAGCGCCCGCGCGC
1 AGGGGGATCGAGTCGATCCCCAGCTTGTGCATTTTGCCTCTCCGGCCGGCTAAGCGCCCGCACGC
31888651 TCATTTCGTGGGTTGGC-GTAGGCATACGGAGTTCATT-CCATGT
66 TCATTTCGTGGGTTGGCTG-AGGCATACGGAGTTCATTCCCATGT
31888694 TTAAGCATAC
Statistics
Matches: 214, Mismatches: 44, Indels: 15
0.78 0.16 0.05
Matches are distributed among these distances:
157 54 0.25
158 107 0.50
159 53 0.25
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.24
Consensus pattern (160 bp):
AGGGGGATCGAGTCGATCCCCAGCTTGTGCATTTTGCCTCTCCGGCCGGCTAAGCGCCCGCACGC
TCATTTCGTGGGTTGGCTGAGGCATACGGAGTTCATTCCCATGTCTAACACCCAGCCAGACTGAG
GGTTGTAGCAGCAGGATCGACAGCACGCAG
Found at i:31888724 original size:26 final size:26
Alignment explanation
Indices: 31888672--31888724 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31888662 GTTGGCGTAG
*
31888672 GCATACGGAGTTCATTCCATGTTTAA
1 GCATACGGAGTTCATTCCATGTCTAA
31888698 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
31888724 G
1 G
31888725 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:31889839 original size:161 final size:160
Alignment explanation
Indices: 31889564--31889965 Score: 420
Period size: 161 Copynumber: 2.5 Consensus size: 160
31889554 ATGGGTTGGC
* ** ** * *
31889564 TCATTCCATGTCTAAGCCCCAATCGGATTGAGGGTTGTGGCAGTGGGACC-GACAGCATGTAGAG
1 TCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTGTGGCAGCAGGACCAG-TAGCATGCAGAG
* * * *
31889628 GGGGATCGGGCCGAT-CCTCGACTTGTGCATTATACCTCAGCGGCCGGCTCAGCACCCGTACGCC
65 GGGGATCGGGCCAATCCCTCGACTTATGCATTATACCTCA-CGGCCGGCTCAGCACCCGCACACC
* * * **
31889692 CGTTTTATGGGTTGGCTTAGGCATAGGGAGTT
129 CATTTCATGGGTTGACTTAGGCATACAGAGTT
31889724 TCATTCCATGTCTAAGCCCCCAACCGGACCGAGGGTTGTGGCAGCAGGACCAGTAGCATGCAGAG
1 TCATTCCATGTCTAAG-CCCCAACCGGACCGAGGGTTGTGGCAGCAGGACCAGTAGCATGCAGAG
* ** *
31889789 GGGGATCGGGCCAATCCCT-GACTTATGCATTATATCCCTC-CGGTCGGCTCAGCGTCCGCACAT
65 GGGGATCGGGCCAATCCCTCGACTTATGCATTATA--CCTCACGGCCGGCTCAGCACCCGCACAC
*
31889852 TCATTTCATGGGTTGACTTAGGCATACAGAGTT
128 CCATTTCATGGGTTGACTTAGGCATACAGAGTT
** ** * * * * * *
31889885 T-ATTCCCA-GTCTAAGATCGGACCAGACCAAGGGTTGTGGCAGCAGGATCAATAGCACGCAGGG
1 TCATT-CCATGTCTAAGCCCCAACCGGACCGAGGGTTGTGGCAGCAGGACCAGTAGCATGCAGAG
*
31889948 GGGGATCGGGCCAGTCCC
65 GGGGATCGGGCCAATCCC
31889966 CAGCTTGCGC
Statistics
Matches: 204, Mismatches: 32, Indels: 13
0.82 0.13 0.05
Matches are distributed among these distances:
159 55 0.27
160 26 0.13
161 115 0.56
162 4 0.02
163 4 0.02
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.22
Consensus pattern (160 bp):
TCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTGTGGCAGCAGGACCAGTAGCATGCAGAGG
GGGATCGGGCCAATCCCTCGACTTATGCATTATACCTCACGGCCGGCTCAGCACCCGCACACCCA
TTTCATGGGTTGACTTAGGCATACAGAGTT
Found at i:31889978 original size:159 final size:160
Alignment explanation
Indices: 31889594--31890071 Score: 387
Period size: 159 Copynumber: 3.0 Consensus size: 160
31889584 AATCGGATTG
** * * * * * **
31889594 AGGGTTGTGGCAGTGGGACCGACAGCATGTAGAGGGGGATCGGGCCGATCCTC-GACTTGTGCAT
1 AGGGTTGTGGCAGCAGGACCAATAGCACGCAGAGGGGGATCGGGCCAATCC-CAGACTTACGCAT
** * * * * * * * * * *
31889658 TATACCTCAGCGGCCGGCTCAGCA-CCCGTACGCCCGTTTTATGGGTTGGCTTAGGCATAGGGAG
65 TATACCTCTCCGACCGGCTCA-AAGCCCGCACACTCATTTCATGGGTTGACTTAGGCATACGAAG
** * * *
31889722 TTTCATT-CCATGTCTAAGCCCCCAA-CCGGACCG
129 -TTCATTCCCA-GTCTAAG-ATCGAACCCAGACCA
* * * *
31889755 AGGGTTGTGGCAGCAGGACCAGTAGCATGCAGAGGGGGATCGGGCCAATCCCTGACTTATGCATT
1 AGGGTTGTGGCAGCAGGACCAATAGCACGCAGAGGGGGATCGGGCCAATCCCAGACTTACGCATT
** ** * *
31889820 ATATCC-CTCCGGTCGGCTCAGCGTCCGCACATTCATTTCATGGGTTGACTTAGGCATAC-AGAG
66 ATA-CCTCTCCGACCGGCTCAAAGCCCGCACACTCATTTCATGGGTTGACTTAGGCATACGA-AG
* *
31889883 TTTATTCCCAGTCTAAGATCGGA-CCAGACCA
129 TTCATTCCCAGTCTAAGATCGAACCCAGACCA
* * * *
31889914 AGGGTTGTGGCAGCAGGATCAATAGCACGCAGGGGGGGATCGGGCCAGTCCCCAG-CTTGCGCAT
1 AGGGTTGTGGCAGCAGGACCAATAGCACGCAGAGGGGGATCGGGCCAAT-CCCAGACTTACGCAT
* * ** * * *
31889978 TCTACCTCTCCGACCGGCTGAAAGCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGT
65 TATACCTCTCCGACCGGCTCAAAGCCCGCACACTCATTTCATGGGTTGACTTAGGCATACGAAGT
31890043 TCATTCCCAGTCTAAGATCGAACCCAGAC
130 TCATTCCCAGTCTAAGATCGAACCCAGAC
31890072 TGAAGGTTAG
Statistics
Matches: 255, Mismatches: 53, Indels: 19
0.78 0.16 0.06
Matches are distributed among these distances:
158 2 0.01
159 126 0.49
160 24 0.09
161 101 0.40
162 2 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.22
Consensus pattern (160 bp):
AGGGTTGTGGCAGCAGGACCAATAGCACGCAGAGGGGGATCGGGCCAATCCCAGACTTACGCATT
ATACCTCTCCGACCGGCTCAAAGCCCGCACACTCATTTCATGGGTTGACTTAGGCATACGAAGTT
CATTCCCAGTCTAAGATCGAACCCAGACCA
Found at i:31890230 original size:172 final size:169
Alignment explanation
Indices: 31889924--31890311 Score: 435
Period size: 172 Copynumber: 2.3 Consensus size: 169
31889914 AGGGTTGTGG
* *
31889924 CAGCAGGATCAATAGCACGCAGGGGGGGATCGGGCC-AGTCCCCAGCTTGCGCATTCTACCTCTC
1 CAGCAGGATCAACAGCACGCA-GGGGGGATCGGGCCGA-TCCCCAGCTTGCACATTCTACCTCTC
* * *
31889988 CGACCGGCTGAAAGCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCCAG
64 CGACCGGCT-AAAGCCCGCACGCTCGTTTCGTGGGTTGACCTAGGCATACGAAGTTCATTCCCAG
* * * *
31890053 TCTAAGATCGAACCCAGACTGAAGGTTA-GGATAGCAGGACCAA
128 TCTAAGACCCAA-CCAGACCGAAGGTTATGG-TAGCAAGACCAA
*
31890096 CAGCAGGAATCAACAGCACGCAGGGGGGATCGGGCCGATCCCTAGCTTGCACATTCTACCTCTCC
1 CAGCAGG-ATCAACAGCACGCAGGGGGGATCGGGCCGATCCCCAGCTTGCACATTCTACCTCTCC
* * * *
31890161 GACTGGCT-AAGTTCCTGCACGCTCGTTTCGTGGTTTGACCTAGGCATAC-AGAGTTCATT-GCA
65 GACCGGCTAAAG--CCCGCACGCTCGTTTCGTGGGTTGACCTAGGCATACGA-AGTTCATTCCCA
* * * **
31890223 TGTCTAAGCCCCAATCGGACCGAAGGTTATGGTAGCAAGACCGG
127 -GTCTAAGACCCAACCAGACCGAAGGTTATGGTAGCAAGACCAA
** * *
31890267 CAGCAGGATTGACAGCACGCAGAAGGGGATCGGGCTGATCCCCAG
1 CAGCAGGATCAACAGCACGCAG-GGGGGATCGGGCCGATCCCCAG
31890312 TCTTAGGCAT
Statistics
Matches: 184, Mismatches: 24, Indels: 17
0.82 0.11 0.08
Matches are distributed among these distances:
170 16 0.09
171 50 0.27
172 104 0.57
173 14 0.08
ACGTcount: A:0.24, C:0.28, G:0.29, T:0.20
Consensus pattern (169 bp):
CAGCAGGATCAACAGCACGCAGGGGGGATCGGGCCGATCCCCAGCTTGCACATTCTACCTCTCCG
ACCGGCTAAAGCCCGCACGCTCGTTTCGTGGGTTGACCTAGGCATACGAAGTTCATTCCCAGTCT
AAGACCCAACCAGACCGAAGGTTATGGTAGCAAGACCAA
Found at i:31890665 original size:26 final size:26
Alignment explanation
Indices: 31890635--31890687 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
31890625 GTTGGCTTAG
31890635 GCATACAAAGTTCATT-CCATGTCTAA
1 GCATACAAAGTTCATTCCCA-GTCTAA
***
31890661 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
31890687 G
1 G
31890688 ATCGGATCAG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAGTCTAA
Found at i:31892651 original size:26 final size:26
Alignment explanation
Indices: 31892614--31892666 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
31892604 GTTGACTTAG
* *
31892614 GCATACGAAGTTCGTCCCTAGTCTAA
1 GCATACGAAGTTCATCCCTAATCTAA
*
31892640 GCATACTG-AGTTCATTCCTAATCTAA
1 GCATAC-GAAGTTCATCCCTAATCTAA
31892666 G
1 G
31892667 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCTAATCTAA
Found at i:31895327 original size:26 final size:26
Alignment explanation
Indices: 31895297--31895348 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
31895287 TGACTTCGCC
*
31895297 ATACGGAGTTCATCCCCAA-TCTAAGA
1 ATACGAAGTTCAT-CCCAAGTCTAAGA
*
31895323 ATACGAAGTTCATTCCAAGTCTAAGA
1 ATACGAAGTTCATCCCAAGTCTAAGA
31895349 TCGAACCGGA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 4 0.17
26 19 0.83
ACGTcount: A:0.37, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
ATACGAAGTTCATCCCAAGTCTAAGA
Found at i:31895825 original size:26 final size:26
Alignment explanation
Indices: 31895795--31895847 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
31895785 GTTGACTTAG
31895795 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
31895821 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
31895847 G
1 G
31895848 ATCGAACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:31895965 original size:184 final size:184
Alignment explanation
Indices: 31895637--31895993 Score: 412
Period size: 184 Copynumber: 1.9 Consensus size: 184
31895627 GTTGACTTAT
* * * * *
31895637 GCATACAGAGTTCATTCCCAGTCCTAGATTGGACCGGACCGAGGGTTGCAACGGCAAGATCGATA
1 GCATACAGAGTTCATTCCCAGTCCTAGATCGAACCGGACCGAGGGTTGCAACAGCAAGATCAACA
* * * * * *
31895702 GCACACAGGGGGGATCGAGCCGATCCTCGACTTACGCATTCTGCCTTTCCGGCCGGCTGAGCGTC
66 GCACACAGAGGGGATCGAGCCGATCCCCGACTTACGCATTCTGCCTCTCCGACCGGCTGAACGCC
*
31895767 CACACACTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAA
131 CACACACCCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAA
* * * * *
31895821 GCATACGGAGTTCATTCCCAGT-CTAAGATCGAACTGGACCGAGGGTTGCGACAGCAGGGTCAAC
1 GCATACAGAGTTCATTCCCAGTCCT-AGATCGAACCGGACCGAGGGTTGCAACAGCAAGATCAAC
** * * * * * *
31895885 AGCACGTAGAGGGGACTGGA-CTGATCCCCGGCTTGCGCATTCTGCCTCTCTGACCTGCTGAACG
65 AGCACACAGAGGGGA-TCGAGCCGATCCCCGACTTACGCATTCTGCCTCTCCGACCGGCTGAACG
* * * **
31895949 CCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCAT
129 CCCACACACCCGTTTCATGGGTTGACTTAGGCATACAGAGTTCAT
31895994 TCCATGTTTA
Statistics
Matches: 141, Mismatches: 30, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
183 2 0.01
184 136 0.96
185 3 0.02
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.22
Consensus pattern (184 bp):
GCATACAGAGTTCATTCCCAGTCCTAGATCGAACCGGACCGAGGGTTGCAACAGCAAGATCAACA
GCACACAGAGGGGATCGAGCCGATCCCCGACTTACGCATTCTGCCTCTCCGACCGGCTGAACGCC
CACACACCCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAA
Found at i:31896137 original size:159 final size:158
Alignment explanation
Indices: 31895821--31896641 Score: 550
Period size: 159 Copynumber: 5.2 Consensus size: 158
31895811 CCCAGTCTAA
* ** * * * *
31895821 GCATACGGAGTTCATTCCCA-GTCTAAGATCGAACTGGACCGAGGGTTGCGACAGCAGGG-TCAA
1 GCATACGAAGTTCATT-CCATGTCTAAGCCCCAACTGGACCGAGGGTTGTGGCAGC-GGGATCGA
* * * * * * * * ** * *
31895884 CAGCACGTAGA-GGGGACTGGACTGATCCCCGGCTTGCGCATTCTGCCTCTCTGACCTG-CTGAA
64 CAGCACGCAGAGGGGGACCGG-CCGATCCCTGGCTTGGGTATTATGCCTCTCCGGTC-GACTCAG
* * ** *
31895947 CGCCCGCACGCCCGTTTCATGGGTTGGCTTAG
127 CGCCCGCACGCTCATTTTGTGGGTTGACTTAG
* * * * * *
31895979 GCATAGGGAGTTCATTCCATGTTTAAGCCCCAACTGGACCGAGGGTTGTGGCAGTGGGATTGGCA
1 GCATACGAAGTTCATTCCATGTCTAAGCCCCAACTGGACCGAGGGTTGTGGCAGCGGGATCGACA
* *
31896044 ACACGCAGAGGGGGACCGAGCCGATCCCTGGCTTGGGTATTATGCCTCTCCGGTCGACTCAGCAC
66 GCACGCAGAGGGGGACCG-GCCGATCCCTGGCTTGGGTATTATGCCTCTCCGGTCGACTCAGCGC
*
31896109 CTGCACGCTCATTTTGTGGGTTGACTTAG
130 CCGCACGCTCATTTTGTGGGTTGACTTAG
* * * ***** ** * ** ** * *
31896138 GCATACGGAGCTCATTCCAGGTCTAAGATTGGACCAGACTGAGGGTTACGATAGCAGGATCGATA
1 GCATACGAAGTTCATTCCATGTCTAAGCCCCAACTGGACCGAGGGTTGTGGCAGCGGGATCGACA
* * * * * * * * * *
31896203 GCACACAG-GAGGGATCGGACAGATCCCTGGCTTGCGTATTTTGCCTCTCCAG-CCAGTTGAGCG
66 GCACGCAGAGGGGGACCGG-CCGATCCCTGGCTTGGGTATTATGCCTCTCCGGTCGA-CTCAGCG
* *
31896266 CCCGCACGCTCATTTTGTGGGTTGGCCTAG
129 CCCGCACGCTCATTTTGTGGGTTGACTTAG
* * * *
31896296 GCATACAAAGTTCATTCCATGTCTAAGCCCCAGCTGGACCAAGGGGTGTGGCAGCGGGATCGACA
1 GCATACGAAGTTCATTCCATGTCTAAGCCCCAACTGGACCGAGGGTTGTGGCAGCGGGATCGACA
* * * * * * *
31896361 GCATGCAGAGGGGGACTGGGCCAATCCCCGGCTTGCGG-ATTATGCCTCTCCGATCGGCTCAGTG
66 GCACGCAGAGGGGGAC-CGGCCGATCCCTGGCTTG-GGTATTATGCCTCTCCGGTCGACTCAGCG
31896425 CCCGCACGCTCATTTTGTGGGTTGACTTAG
129 CCCGCACGCTCATTTTGTGGGTTGACTTAG
** ** * *
31896455 GCATACGAAGTTCATTCTCA-GTCTAAG-ATCAGACCAGACCGAGGGTTGCT-GTAGCAGGATCG
1 GCATACGAAGTTCATTC-CATGTCTAAGCCCCA-ACTGGACCGAGGGTTG-TGGCAGCGGGATCG
* * * * * * * * * ** *
31896517 ACAGCACGCAG-GGTGGATCGAGTCGATCCCCTAGCTTGTGCATTCTGCCTTTCCCG-CAGGTTG
63 ACAGCACGCAGAGGGGGACCG-GCCGAT-CCCTGGCTTGGGTATTATGCCTCTCCGGTC-GACTC
* * * * *
31896580 AGCGCCCGCACACTCGTTTCGGGGGTTGGCTTAG
125 AGCGCCCGCACGCTCATTTTGTGGGTTGACTTAG
*
31896614 GCATACGAACTTCATTCCATGTCTAAGC
1 GCATACGAAGTTCATTCCATGTCTAAGC
31896642 ATACGGAGTT
Statistics
Matches: 504, Mismatches: 139, Indels: 38
0.74 0.20 0.06
Matches are distributed among these distances:
157 10 0.02
158 186 0.37
159 300 0.60
160 8 0.02
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (158 bp):
GCATACGAAGTTCATTCCATGTCTAAGCCCCAACTGGACCGAGGGTTGTGGCAGCGGGATCGACA
GCACGCAGAGGGGGACCGGCCGATCCCTGGCTTGGGTATTATGCCTCTCCGGTCGACTCAGCGCC
CGCACGCTCATTTTGTGGGTTGACTTAG
Found at i:31896289 original size:501 final size:500
Alignment explanation
Indices: 31895257--31896323 Score: 1218
Period size: 501 Copynumber: 2.1 Consensus size: 500
31895247 TCTCCAATCG
* * * * * *
31895257 GTTGAGCACCCGCATGCTCGTTTCATGGGTTGACTTCGCCATACGGAGTTCATCCCCAATCTAAG
1 GTTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAG
* * *
31895322 AATACGAAGTTCATTCCAAGTCTAAGATCGAACCGGATCGAGGGTTGCAGCAGCAGTACCAACAG
66 CATACGAAGTTCATTCCAAGTCTAAGATCGAACCGGACCGAGGGTTGCAGCAGCAGGACCAACAG
* * * * **
31895387 CACACAGGAGGGACTGGGTCGATCCCTGGCTTGCGCATTCTGTCTCTCCAGTCGACTGAGTGCCC
131 CACACAGGAGGGACTGGCTCGATCCCCGGCTTGCGCATTCTGCCTCTCCACTCGACTGAACGCCC
* ** * * *
31895452 GCAGGCGTGTTTCGTGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGACCTAGCCAGAC
196 GCACGCCCGTTTCATGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGACCCAACCAGAC
* * * * *
31895517 CGAGTGTTGTGGCAGCGGGACTGGCAGCACACTGAAAGGGATCGGGCCGATCCCTGGCTTGCGCA
261 CGAGGGTTGTGGCAGCGGGACTGGCAACACACAGAAAGGGACCGAGCCGATCCCTGGCTTGCGCA
* * * * * *
31895582 TTATGCCTCTTCGATCGGCTCAGCGCCCGCACGCTCGTTTCGTTGGTTGACTTATGCATACAGAG
326 TTATGCCTCTCCGATCGACTCAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAG
* * * * *
31895647 TTCATTCCCAGTCCTAGATTGGACCGGACCGAGGGTTGCAACGGCAAGATCGATAGCACACAGGG
391 CTCATTCCCAGTCCTAGATTGGACCAGACCGAGGGTTACAACAGCAAGATCGATAGCACACAGGA
* * * *
31895712 GGGATCGAGCCGATCCTCGACTTACGCATTCTGCCTTTCCGGCCG
456 GGGATCGAGCAGATCCTCGACTTACGCATTCTGCCTCTCCAGCCA
* * * *
31895757 GCTGAGCGTCCACACACTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAG
1 GTTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAG
* * * **
31895822 CATACGGAGTTCATTCCCAGTCTAAGATCGAACTGGACCGAGGGTTGC-GACAGCAGGGTCAACA
66 CATACGAAGTTCATTCCAAGTCTAAGATCGAACCGGACCGAGGGTTGCAG-CAGCAGGACCAACA
** *
31895886 GCACGTA-GAGGGGACTGGACT-GATCCCCGGCTTGCGCATTCTGCCTCTCTGAC-CTG-CTGAA
130 GCACACAGGA-GGGACTGG-CTCGATCCCCGGCTTGCGCATTCTGCCTCTC-CACTC-GACTGAA
* *
31895947 CGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTTTAAGCCCCAA
191 CGCCCGCACGCCCGTTTCAT-GGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGACCCAA
** * * * **
31896012 CTGGACCGAGGGTTGTGGCAGTGGGATTGGCAACACGCAGAGGGGGACCGAGCCGATCCCTGGCT
255 CCAGACCGAGGGTTGTGGCAGCGGGACTGGCAACACACAGAAAGGGACCGAGCCGATCCCTGGCT
* * * * *
31896077 TGGGTATTATGCCTCTCCGGTCGACTCAGCACCTGCACGCTCATTTTGTGGGTTGACTTAGGCAT
320 TGCGCATTATGCCTCTCCGATCGACTCAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCAT
* * * * *
31896142 ACGGAGCTCATT-CCAGGT-CTAAGATTGGACCAGACTGAGGGTTACGATAGCAGGATCGATAGC
385 ACAGAGCTCATTCCCA-GTCCT-AGATTGGACCAGACCGAGGGTTACAACAGCAAGATCGATAGC
* * * *
31896205 ACACAGGAGGGATCG-GACAGATCC-CTGGCTTGCGTATTTTGCCTCTCCAGCCA
448 ACACAGGAGGGATCGAG-CAGATCCTC-GACTTACGCATTCTGCCTCTCCAGCCA
* ** * * * *
31896258 GTTGAGCGCCCGCACGCTCATTTTGTGGGTTGGCCTAGGCATACAAAGTTCAT-TCCATGTCTAA
1 GTTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCA-GTCTAA
31896322 GC
65 GC
31896324 CCCAGCTGGA
Statistics
Matches: 469, Mismatches: 87, Indels: 21
0.81 0.15 0.04
Matches are distributed among these distances:
499 3 0.01
500 178 0.38
501 288 0.61
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (500 bp):
GTTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAG
CATACGAAGTTCATTCCAAGTCTAAGATCGAACCGGACCGAGGGTTGCAGCAGCAGGACCAACAG
CACACAGGAGGGACTGGCTCGATCCCCGGCTTGCGCATTCTGCCTCTCCACTCGACTGAACGCCC
GCACGCCCGTTTCATGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGACCCAACCAGAC
CGAGGGTTGTGGCAGCGGGACTGGCAACACACAGAAAGGGACCGAGCCGATCCCTGGCTTGCGCA
TTATGCCTCTCCGATCGACTCAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAG
CTCATTCCCAGTCCTAGATTGGACCAGACCGAGGGTTACAACAGCAAGATCGATAGCACACAGGA
GGGATCGAGCAGATCCTCGACTTACGCATTCTGCCTCTCCAGCCA
Found at i:31896405 original size:317 final size:316
Alignment explanation
Indices: 31895902--31896641 Score: 907
Period size: 317 Copynumber: 2.3 Consensus size: 316
31895892 AGAGGGGACT
* * * * * * *
31895902 GGACTGATCCCCGGCTTGCGCATTCTGCCTCT-CTGACCTGCTGAACGCCCGCACGCCCGTTTCA
1 GGAC-GATCCCTGGCTTGCGCATTCTGCCTCTCCAG-CCAGTTGAGCGCCCGCACGCTCGTTTCG
* * * * *
31895966 TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTTTAAGCCCCAACTGGACCGAGGGTTGTGGC
64 TGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAACTGGACCAAGGGGTGTGGC
* * * * *
31896031 AGTGGGATTGGCAACACGCAGAGGGGGACCGAGCCGATCCCTGGCTTGGGTATTATGCCTCTCCG
129 AGCGGGATCGACAACACGCAGAGGGGGACCGAGCCAATCCCCGGCTTGGGTATTATGCCTCTCCG
* * *
31896096 GTCGACTCAGCACCTGCACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGCTCATTC-CAGGT
194 ATCGACTCAGCACCCGCACGCTCATTTTGTGGGTTGACTTAGGCATACGAAGCTCATTCTCA-GT
** * *
31896160 CTAAGATTGGACCAGACTGAGGGTTAC-GATAGCAGGATCGATAGCACACAGGAG-GGATC
258 CTAAGATCAGACCAGACCGAGGGTTACTG-TAGCAGGATCGACAGCACACAGG-GTGGATC
* * * *
31896219 GGACAGATCCCTGGCTTGCGTATTTTGCCTCTCCAGCCAGTTGAGCGCCCGCACGCTCATTTTGT
1 GGAC-GATCCCTGGCTTGCGCATTCTGCCTCTCCAGCCAGTTGAGCGCCCGCACGCTCGTTTCGT
* * *
31896284 GGGTTGGCCTAGGCATACAAAGTTCATTCCATGTCTAAGCCCCAGCTGGACCAAGGGGTGTGGCA
65 GGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAACTGGACCAAGGGGTGTGGCA
* * * *
31896349 GCGGGATCGACAGCATGCAGAGGGGGACTGGGCCAATCCCCGGCTTGCGG-ATTATGCCTCTCCG
130 GCGGGATCGACAACACGCAGAGGGGGACCGAGCCAATCCCCGGCTTG-GGTATTATGCCTCTCCG
* ** *
31896413 ATCGGCTCAGTGCCCGCACGCTCATTTTGTGGGTTGACTTAGGCATACGAAGTTCATTCTCAGTC
194 ATCGACTCAGCACCCGCACGCTCATTTTGTGGGTTGACTTAGGCATACGAAGCTCATTCTCAGTC
* *
31896478 TAAGATCAGACCAGACCGAGGGTTGCTGTAGCAGGATCGACAGCACGCAGGGTGGATC
259 TAAGATCAGACCAGACCGAGGGTTACTGTAGCAGGATCGACAGCACACAGGGTGGATC
* * * * * *
31896536 GAGTCGATCCCCTAGCTTGTGCATTCTGCCTTTCCCG-CAGGTTGAGCGCCCGCACACTCGTTTC
1 G-GACGAT-CCCTGGCTTGCGCATTCTGCCTCTCCAGCCA-GTTGAGCGCCCGCACGCTCGTTTC
* *
31896600 GGGGGTTGGCTTAGGCATACGAACTTCATTCCATGTCTAAGC
63 GTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGC
31896642 ATACGGAGTT
Statistics
Matches: 359, Mismatches: 56, Indels: 15
0.83 0.13 0.03
Matches are distributed among these distances:
316 1 0.00
317 268 0.75
318 90 0.25
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.24
Consensus pattern (316 bp):
GGACGATCCCTGGCTTGCGCATTCTGCCTCTCCAGCCAGTTGAGCGCCCGCACGCTCGTTTCGTG
GGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAACTGGACCAAGGGGTGTGGCAG
CGGGATCGACAACACGCAGAGGGGGACCGAGCCAATCCCCGGCTTGGGTATTATGCCTCTCCGAT
CGACTCAGCACCCGCACGCTCATTTTGTGGGTTGACTTAGGCATACGAAGCTCATTCTCAGTCTA
AGATCAGACCAGACCGAGGGTTACTGTAGCAGGATCGACAGCACACAGGGTGGATC
Found at i:31896653 original size:26 final size:26
Alignment explanation
Indices: 31896614--31896666 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
31896604 GTTGGCTTAG
31896614 GCATACGAACTTCATT-CCATGTCTAA
1 GCATACGAACTTCATTCCCA-GTCTAA
* *
31896640 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAACTTCATTCCCAGTCTAA
31896666 G
1 G
31896667 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAACTTCATTCCCAGTCTAA
Found at i:31896833 original size:26 final size:26
Alignment explanation
Indices: 31896797--31896849 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31896787 GTTGGCTTAG
*
31896797 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATAAGGAGTTCATTCCTA-GTCTAA
31896823 GCATAAGGAGTTCATTCCTAGTCTAA
1 GCATAAGGAGTTCATTCCTAGTCTAA
31896849 G
1 G
31896850 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCTAGTCTAA
Found at i:31897043 original size:26 final size:26
Alignment explanation
Indices: 31897007--31897059 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
31896997 GTTGACTTAG
31897007 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
31897033 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
31897059 G
1 G
31897060 ATAGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:31897228 original size:26 final size:26
Alignment explanation
Indices: 31897194--31897243 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
31897184 GGCTTAGGCA
*
31897194 TACGGAGTTCATT-CCATGTCTAAGCC
1 TACGAAGTTCATTCCCA-GTCTAAGCC
31897220 TACGAAGTTCATTCCCAGTCTAAG
1 TACGAAGTTCATTCCCAGTCTAAG
31897244 ATTAGACCAG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.30
Consensus pattern (26 bp):
TACGAAGTTCATTCCCAGTCTAAGCC
Found at i:31897321 original size:393 final size:387
Alignment explanation
Indices: 31896578--31897988 Score: 1481
Period size: 393 Copynumber: 3.6 Consensus size: 387
31896568 TCCCGCAGGT
* * * * * *
31896578 TGAGCGCCCGCACACTCGTTTCGGGGGTTGGCTTAGGCATACGAACTTCAT-TCCATGTCTAAGC
1 TGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCA-GTCTAAGC
* * *
31896642 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAACAGGATTGACAGC
65 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCAGGATCGACAGC
* * * * * * *
31896707 ACGCAGGGTGGACCGGGCCGAT-CCTCGCCTTGC-GATTCTACCTCTCCG-GTCGGCTGAGCGCC
130 ACGCAGGGGGGACCGAGCCGATCCCT-GACTTGCACATTCTGCCTCTCCGACT-GACTGAGCGCC
* * * *
31896769 CGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATAAGGAGT
193 CGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGAAGT
* * * * *
31896834 TCATTCCTAGTCTAAGATCAGATCGGACCGAGGGTTGCGACAGCAGGACCAGCAGTAGGATCGAT
258 TCATTCCCAGTCTAAGATCAGATC-GACCGAGGGTTGCGGCAGTAGGACCAGCAG-AAGATCGAC
* * *
31896899 AGCATACAAGGGGGGATCGGGCTGATCCCTGGCTTGCGTATTCTGCCTCTTCGATCGGGCTCTCT
321 AGCAT-C--GGGGGGATCGGGCTGATCCCTGGCTTACGCATTCTGCCTCTTCGA-CGGGCTCTCC
31896964 AGTCGAC
382 AG-CGAC
* *
31896971 TGAGCACCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCA
1 TGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCA
* *
31897036 TATGGAGTTCATTCCCAGTCTAAGAT-AGGACCGGATCGAGGGTTACGGCAGCAGGATCGACAGC
66 TACGGAGTTCATTCCCAGTCTAAGATCA-GACCGGACCGAGGGTTACGGCAGCAGGATCGACAGC
* * * * * *
31897100 ACGCAGGGGGGATCGGGTCAATCCCTGACTTGCACATTCTGCCTCT-CTAGCTGACTGAGTGCCC
130 ACGCAGGGGGGACCGAGCCGATCCCTGACTTGCACATTCTGCCTCTCCGA-CTGACTGAGCGCCC
* * *
31897164 GCACGTTCGTTTCATTGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCTACGAAGTT
194 GCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGAAGTT
* * * *
31897229 CATTCCCAGTCTAAGATTAGACCAGACCGAGGGTTGTGGTAGTAGGACCAGCAGCAAGATCGACA
259 CATTCCCAGTCTAAGATCAGATC-GACCGAGGGTTGCGGCAGTAGGACCAGCAG-AAGATCGACA
* * * * * * *
31897294 GCATGCGGGGGGGATTGGGCCGATCCCTGACTTTCGCATTCTACCTC-TCGACCGGCATCTCCGG
322 GCAT-C-GGGGGGATCGGGCTGATCCCTGGCTTACGCATTCTGCCTCTTCGACGGGC-TCTCCAG
31897358 CCGAC
384 -CGAC
* * * * *
31897363 TGAGCGCCCGCACGCTTGTTTCATGGGTTAACTTAGGCATACGAAGTTCATCCCCAATCTAAGCA
1 TGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCA
* * * * *
31897428 TACGAAGTTCATTCCCAGTCTAAGATCAAACTGGACCGAGGGTTACGG-ATCCCCGGATCGACAG
66 TACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCA--GCAGGATCGACAG
* * * * * * * * * *
31897492 CTCACAGGGGGGACCGAGCCGGTCCCCGGCTTGCATATTCTTCCTCTCCGATTGGCTGAGCACCC
129 CACGCAGGGGGGACCGAGCCGATCCCTGACTTGCACATTCTGCCTCTCCGACTGACTGAGCGCCC
* ** * *
31897557 GCACGCTCGTTTCGTGGGTTCACTTACGCATATGGAGTTCATTCCATGTCTAAGCATACGAAGTT
194 GCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGAAGTT
** * * * *
31897622 CATTCCCAAACTAAGATCAGATTCGACCAAGGGCTGCGGCAGTAGGATC-G-A-TAGA---AC-G
259 CATTCCCAGTCTAAGATCAGA-TCGACCGAGGGTTGCGGCAGTAGGACCAGCAGAAGATCGACAG
* * * * * * *
31897680 CA--AGGGGGATCGGGCTGATCCCCGGCTTATGCATTTTGCCTCTTCGGCCGGCCTCTCCAGCTA
323 CATCGGGGGGATCGGGCTGATCCCTGGCTTACGCATTCTGCCTCTTC-GACGGGCTCTCCAGCGA
31897743 GC
387 -C
* * * * * *
31897745 TGAGTGCCCACAGGTTTGGTTCGTGGGTTGGCTTAGGCATACGAAGTTCATCCCCAGTCTAAGCA
1 TGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCA
* * * * * * ** *
31897810 TACGGACTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGACAGCAAGATCCCCAACA
66 TACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCAGGATCGACAGCA
* * * *
31897875 CGCA-GGGGGACCGAGTCGATCCCTGACTTGCGCATTCTGCCTCTCCGACTGACTGAACGCTCGC
131 CGCAGGGGGGACCGAGCCGATCCCTGACTTGCACATTCTGCCTCTCCGACTGACTGAGCGCCCGC
* **
31897939 ACACTCGTTTCATGGGTTGGCTTAGGCATACAAAGTTCATTCCATGTCTA
196 ACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
31897989 GATCTAAGCC
Statistics
Matches: 841, Mismatches: 161, Indels: 45
0.80 0.15 0.04
Matches are distributed among these distances:
380 90 0.11
381 44 0.05
382 105 0.12
383 5 0.01
385 3 0.00
386 2 0.00
389 3 0.00
391 6 0.01
392 114 0.14
393 322 0.38
394 146 0.17
395 1 0.00
ACGTcount: A:0.21, C:0.28, G:0.27, T:0.24
Consensus pattern (387 bp):
TGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCA
TACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCAGGATCGACAGCA
CGCAGGGGGGACCGAGCCGATCCCTGACTTGCACATTCTGCCTCTCCGACTGACTGAGCGCCCGC
ACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGAAGTTCA
TTCCCAGTCTAAGATCAGATCGACCGAGGGTTGCGGCAGTAGGACCAGCAGAAGATCGACAGCAT
CGGGGGGATCGGGCTGATCCCTGGCTTACGCATTCTGCCTCTTCGACGGGCTCTCCAGCGAC
Found at i:31897429 original size:26 final size:26
Alignment explanation
Indices: 31897399--31897451 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
31897389 GTTAACTTAG
31897399 GCATACGAAGTTCATCCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* *
31897425 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
31897451 G
1 G
31897452 ATCAAACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:31897810 original size:26 final size:26
Alignment explanation
Indices: 31897781--31897833 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
31897771 GTTGGCTTAG
*
31897781 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAACTTCATCCCCAGTCTAA
* *
31897807 GCATACGGACTTCATTCCCAGTCTAA
1 GCATACGAACTTCATCCCCAGTCTAA
31897833 G
1 G
31897834 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.30, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAACTTCATCCCCAGTCTAA
Found at i:31898476 original size:26 final size:26
Alignment explanation
Indices: 31898440--31898492 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
31898430 GTTGGCTTAG
*
31898440 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACAGAGTTCATTCCAAGTCTAA
*
31898466 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCAAGTCTAA
31898492 G
1 G
31898493 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCAAGTCTAA
Found at i:31899172 original size:26 final size:26
Alignment explanation
Indices: 31899136--31899188 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
31899126 GTTGGCTTAG
31899136 GCATACAGAGTTCATTCCAAGTCTAA
1 GCATACAGAGTTCATTCCAAGTCTAA
*
31899162 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCAAGTCTAA
31899188 G
1 G
31899189 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCAAGTCTAA
Found at i:31899895 original size:26 final size:26
Alignment explanation
Indices: 31899858--31899910 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
31899848 GTTGGCTTAG
*
31899858 GCATACAGAGTTCATTCCCTGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
31899884 GCATAC-GAAGTTCATTCTCAGTCTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
31899910 G
1 G
31899911 ATCTGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:31901127 original size:26 final size:26
Alignment explanation
Indices: 31901097--31901149 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
31901087 GTTGACTTAG
*
31901097 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
31901123 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
31901149 G
1 G
31901150 ATCAGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:31901608 original size:158 final size:156
Alignment explanation
Indices: 31901193--31901623 Score: 407
Period size: 159 Copynumber: 2.7 Consensus size: 156
31901183 TGGCAGCAGA
* * * *
31901193 AGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTACCTTTCTGGCCGACTGAGTGCCCGCACA
1 AGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTC-CGCCGGCTGAGTGCCCGCACA
* * * * ***** *
31901258 C-CTGTTTCATGGGTTGGCTTAGGAATAGGGAGTTCATTCCATGTCTAAGCCCCTGTCGAACCAA
65 CTC-GTTTCATGGG-TAGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACAAAACCAAACCAA
* * * * *
31901322 GGGTTGTGGCAGCGGGATTGGTAGCACGC
128 GGGTTGTGACAGCAGGATCGATAGCACAC
* * * * * * * **
31901351 AGAGGGGGATCCGGCCGATCCTCGGCTTGCACATTATGCCTCTCCGGCTGGCTCAACGCCCGCAC
1 AG-GGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCC-GCCGGCTGAGTGCCCGCAC
* * * * * *
31901416 GCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCA-GTCTAAGATAAAACCAAACCA
64 ACTCGTTTCATGGGTAG-CTTAGGCATACGGAGTTCATT-CCATGTCTAAGACAAAACCAAACCA
*
31901480 AGGGTTGTGACAGCAGGATCGATAGCACAT
127 AGGGTTGTGACAGCAGGATCGATAGCACAC
* * * * *
31901510 AGGGGGGATCGGGTCGGTCCCCGGCTTACGCATTCTGCCTCTCCGATCGGTTGAGTGCCTGCACA
1 AGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCG-CCGGCTGAGTGCCCGCACA
31901575 CTCGTTTCATGGGCTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
65 CTCGTTTCATGGG-TAGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
31901624 CATACAGAGT
Statistics
Matches: 212, Mismatches: 53, Indels: 16
0.75 0.19 0.06
Matches are distributed among these distances:
157 4 0.02
158 88 0.42
159 116 0.55
160 4 0.02
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.24
Consensus pattern (156 bp):
AGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGCCGGCTGAGTGCCCGCACAC
TCGTTTCATGGGTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACAAAACCAAACCAAGGG
TTGTGACAGCAGGATCGATAGCACAC
Found at i:31901627 original size:26 final size:26
Alignment explanation
Indices: 31901597--31901649 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31901587 GCTAGCTTAG
*
31901597 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
31901623 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
31901649 G
1 G
31901650 ATCAGGCCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:31901977 original size:171 final size:170
Alignment explanation
Indices: 31901693--31902016 Score: 427
Period size: 171 Copynumber: 1.9 Consensus size: 170
31901683 CAGTAGTAGG
* ** * *
31901693 ATCGACAGCACACAGGGGGGACCGAGCCGATCCCCGGCTTGTGCATTCTACCTCTTCAACCGACT
1 ATCGACAGCACACAGGGGGGACCGAGCCGATCCCCGACTTACGCATTATACCTCTCCAACCGACT
* * *
31901758 GAGTGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCAAGTCTAAGCC-
66 GAGTACCCGCACGCCCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCAAGTCTAAGCCA
* * *
31901822 CTAGTCGGACCGAGGGTTGTGGCAACAGGACTGGTAGCGGT
131 C-AGTCGAACAGAGGGTTATGGCAACAGGACTGGTAGCGGT
* * * * *
31901863 ATCGACAGCACGCAGAGGGGGACC-AGACTGATCCCTGACTTACGCATTATGCCTCTCCGACCGA
1 ATCGACAGCACACAG-GGGGGACCGAG-CCGATCCCCGACTTACGCATTATACCTCTCCAACCGA
* ** *
31901927 CTGAGTACCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
64 CTGAGTACCCGCACGCCCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCAAGTCTAAGC
31901992 CACAGTCGAACAGAGGGTTATGGCA
129 CACAGTCGAACAGAGGGTTATGGCA
31902017 GTGGGACCGA
Statistics
Matches: 131, Mismatches: 20, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
170 16 0.12
171 114 0.87
172 1 0.01
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.22
Consensus pattern (170 bp):
ATCGACAGCACACAGGGGGGACCGAGCCGATCCCCGACTTACGCATTATACCTCTCCAACCGACT
GAGTACCCGCACGCCCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCAAGTCTAAGCCA
CAGTCGAACAGAGGGTTATGGCAACAGGACTGGTAGCGGT
Found at i:31902167 original size:159 final size:157
Alignment explanation
Indices: 31901907--31902309 Score: 445
Period size: 159 Copynumber: 2.5 Consensus size: 157
31901897 CTGACTTACG
* * * **
31901907 CATTATGCCTCTCCGACCGACTGAGTACCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGG
1 CATTATGCCTCTCCGACCGGCTGAGTACCCGAACGCTCATTTCGTGGGTTGGCTTAGGCATACAG
* * * * *
31901972 AGTTCATTCCATGTCTAAGCCACAGTCGAACAGAGGGTTATGGCAGTGGGACCGACCGCACGCAG
66 AGTTCATTCCATGTCTAAG-CACAATCGAACAGAGGGTTACGGCAGTAGGACCGACAGCACGAAG
**
31902037 AGGCGGAACGGGTCGATCCCCGGCTTGCA
130 -GGCGGAACAAGTCGATCCCCGGCTTGCA
* * * * *
31902066 CATTATTCCTCTTCGACCGGCTCAGTGCCCGAACGCTCATTTCGTGGGTTGACTTAGGCATACAG
1 CATTATGCCTCTCCGACCGGCTGAGTACCCGAACGCTCATTTCGTGGGTTGGCTTAGGCATACAG
* * * *
31902131 AGTTCATTCCCA-GTCTAAG-ATCGAATC-AGACCGAGGGTTGCGGCAGTAGGATCGATAGCACG
66 AGTTCATT-CCATGTCTAAGCA-C-AATCGA-ACAGAGGGTTACGGCAGTAGGACCGACAGCACG
* * *
31902193 AAGGGTGGATCAAGTCGATCCCCGGCTTGCG
127 AAGGGCGGAACAAGTCGATCCCCGGCTTGCA
* * * * * *
31902224 CATTCTGCCTCTCCTG-TCGGTTGAGCACCCGTACGCTCATTTTGTGGGTTGGCTTAGGCATACA
1 CATTATGCCTCTCC-GACCGGCTGAGTACCCGAACGCTCATTTCGTGGGTTGGCTTAGGCATACA
31902288 GAGTTCATTCCATGTCTAAGCA
65 GAGTTCATTCCATGTCTAAGCA
31902310 TATGGAGTTC
Statistics
Matches: 202, Mismatches: 35, Indels: 14
0.80 0.14 0.06
Matches are distributed among these distances:
157 4 0.02
158 92 0.46
159 103 0.51
160 3 0.01
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (157 bp):
CATTATGCCTCTCCGACCGGCTGAGTACCCGAACGCTCATTTCGTGGGTTGGCTTAGGCATACAG
AGTTCATTCCATGTCTAAGCACAATCGAACAGAGGGTTACGGCAGTAGGACCGACAGCACGAAGG
GCGGAACAAGTCGATCCCCGGCTTGCA
Found at i:31903383 original size:26 final size:26
Alignment explanation
Indices: 31903344--31903399 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
31903334 TGGCTTAGCT
*
31903344 TAAGCATACGGAGTTCATT-CCATGTC
1 TAAGCATACAGAGTTCATTCCCA-GTC
31903370 TAAGCATACAGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTCATTCCCAGTC
31903396 TAAG
1 TAAG
31903400 AGTTTGAGCC
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 25 0.89
27 3 0.11
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.29
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATTCCCAGTC
Found at i:31904108 original size:26 final size:26
Alignment explanation
Indices: 31904059--31904111 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
31904049 GTTGACTTAG
*
31904059 GCATACGAAGTTCATCCTCGGTCTAA
1 GCATACGAAGTTCATCCTCAGTCTAA
*
31904085 GCATACGGAGTTCATTCCT-AGTCTAA
1 GCATACGAAGTTCA-TCCTCAGTCTAA
31904111 G
1 G
31904112 ATCATATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATCCTCAGTCTAA
Found at i:31904977 original size:26 final size:26
Alignment explanation
Indices: 31904941--31904993 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
31904931 GTTGGCTTAG
31904941 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
31904967 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
31904993 G
1 G
31904994 ATCAAACTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:31905122 original size:184 final size:183
Alignment explanation
Indices: 31904740--31905152 Score: 461
Period size: 184 Copynumber: 2.3 Consensus size: 183
31904730 CACACGATCG
** * * *
31904740 TTTCATGGGTTGAATTAGGCATACGGAGTTCATCCCCA-GTCTAAGCATATGGAGTTCATTCTAG
1 TTTCATGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAAGCATACGGAGTTCATTCCAG
* * * * * *
31904804 TCTAAGATCAGACCGGACCAAGGGTTGCGACAGAAGGTTCGGCAGCACGCAAGGGGGATCGGGCT
65 TCTAAGATCAAACCGGACCAAGGGTTACGACAGAAGGATCGGCAGCACACAAGGGGGACCGGCCT
* * ** * * * *
31904869 GATCCTCGGCTTATGCATTCTGCATCTCCGGCCAGCTTAGCACTCGCACGCCCG
130 GATCCCCGACTTACACATTCTGCATCTCCGGCCAGCTGAGCACCCGCACACCCA
*
31904923 TTTTATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAG
1 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATT-CCAG
* * * * * *
31904988 TCTAAGATCAAACTGGATCGAGGGTTACGACAGTAGGATCGGCAGCACACAGGGGGGCCCAGGCC
65 TCTAAGATCAAACCGGACCAAGGGTTACGACAGAAGGATCGGCAGCACACAAGGGGGACC-GGCC
* * * * **
31905053 T-ATCCCCGACTTGCACATTCTGCCTCTCCGGTCTGCTGAGTGCCCGCACACCCA
129 TGATCCCCGACTTACACATTCTGCATCTCCGGCCAGCTGAGCACCCGCACACCCA
* ** *
31905107 TTTCATGGTTTGGCTTAGTTATAGGGAGTTCATTCCATGTCTAAGC
1 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
31905153 CCCAGTTAGA
Statistics
Matches: 190, Mismatches: 37, Indels: 5
0.82 0.16 0.02
Matches are distributed among these distances:
182 3 0.02
183 51 0.27
184 132 0.69
185 4 0.02
ACGTcount: A:0.22, C:0.26, G:0.27, T:0.26
Consensus pattern (183 bp):
TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCAGT
CTAAGATCAAACCGGACCAAGGGTTACGACAGAAGGATCGGCAGCACACAAGGGGGACCGGCCTG
ATCCCCGACTTACACATTCTGCATCTCCGGCCAGCTGAGCACCCGCACACCCA
Found at i:31905348 original size:159 final size:159
Alignment explanation
Indices: 31905185--31905490 Score: 364
Period size: 159 Copynumber: 1.9 Consensus size: 159
31905175 GTAACGGGAC
* * * * * *
31905185 CGACAGCACGTAGAGAGGGATCGGGCC-GATCCCCGACTTATGCATTATGCCTTTCCGGCTAGCT
1 CGACAGCACATAGAGAAGGACCGGGCCTG-TCCCCGACTTATGCATTATGCCTCTCCGACCAGCT
** ** * *
31905249 CTGTGCCCATACG-TTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGAT
65 AAGCACCCATACGCTT-GTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* *
31905313 CAGACTGGACGGAGGGTTGCGACAGTAGGAT
129 CAGACCGGACCGAGGGTTGCGACAGTAGGAT
* * * * *
31905344 CGACAGCACATAGGGAAGGACCGGGCCTGTCCCCGGCTTGTGCATTCTGCCTCTCCGACCGGCTA
1 CGACAGCACATAGAGAAGGACCGGGCCTGTCCCCGACTTATGCATTATGCCTCTCCGACCAGCTA
** * **
31905409 AGCACCTGTACGCTTGTTTCATGGGTTGCCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTG
66 AGCACCCATACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
31905474 GACCGGACCGAGGGTTG
131 GACCGGACCGAGGGTTG
31905491 TGGCTGCAGG
Statistics
Matches: 121, Mismatches: 24, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
159 118 0.98
160 3 0.02
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (159 bp):
CGACAGCACATAGAGAAGGACCGGGCCTGTCCCCGACTTATGCATTATGCCTCTCCGACCAGCTA
AGCACCCATACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
GACCGGACCGAGGGTTGCGACAGTAGGAT
Found at i:31905800 original size:171 final size:169
Alignment explanation
Indices: 31905339--31905811 Score: 506
Period size: 170 Copynumber: 2.8 Consensus size: 169
31905329 TTGCGACAGT
** * *
31905339 AGGATCGACAGCACATAGGGAAGGACCGGGCCTG-TCCCCGGCTTGTGCATTCTGCCTCTCCGAC
1 AGGATCGACAGCACGCAGGG-GGGACCGGG-CTGAT-CCCAGCTTGTGCATTCTGCCTCTCCGAC
* * * * *
31905403 CGGCTAAGCACCTGTACGCTTGTTTCATGGGTTGCCTTAGGCATACGGAGTTCATTCCCA-GTCT
63 TGGTTAAGCACCTGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATT-CCATGTCT
*** * * **
31905467 AAGATTGGACCGGACCGAGGGTTGTGGCTGCAGGACCAGCAGC
127 AAGACCAGACCAGACCGAAGGTTGTGGCAACAGGACCAGCAGC
* * * * **
31905510 AGGATCGACAGCATGCAGGGGGGACCGGGCTGATCCCCGATT-TACACATTCTGGTTCTCCGACT
1 AGGATCGACAGCACGCAGGGGGGACCGGGCTGATCCCAGCTTGT--GCATTCTGCCTCTCCGACT
* * *
31905574 GGTTAAGCACCTGCACGCTGGTTTCATGGGTTGGCTTAGGCATACTGAGTTCATTCCATGTCTAA
64 GGTTAAGCACCTGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAA
* * *
31905639 GCCCCAG-CCAGACCGAATGTTGTGGCAACAGGACCGGCAGC
129 G-ACCAGACCAGACCGAAGGTTGTGGCAACAGGACCAGCAGC
* *
31905680 AGGATTGACAGCACGCAGAGGGGGACCGGGCTGATCTCCAGCTTGTGCATTATGCCTCTCCGACT
1 AGGATCGACAGCACGCAG-GGGGGACCGGGCTGATC-CCAGCTTGTGCATTCTGCCTCTCCGACT
* * * * *
31905745 GGTTGAGCGCCTGCACGCTCGTTTCGTGGGTTAACTTAGTCATACGGAGTTCATTCC-TAGTCTA
64 GGTTAAGCACCTGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCAT-GTCTA
31905809 AGA
128 AGA
31905812 TCGAACCGGA
Statistics
Matches: 251, Mismatches: 42, Indels: 19
0.80 0.13 0.06
Matches are distributed among these distances:
168 1 0.00
169 12 0.05
170 126 0.50
171 106 0.42
172 5 0.02
173 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (169 bp):
AGGATCGACAGCACGCAGGGGGGACCGGGCTGATCCCAGCTTGTGCATTCTGCCTCTCCGACTGG
TTAAGCACCTGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGA
CCAGACCAGACCGAAGGTTGTGGCAACAGGACCAGCAGC
Found at i:31906293 original size:26 final size:26
Alignment explanation
Indices: 31906259--31906308 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
31906249 GGCTTAGGCA
31906259 TACGAAGTTCATT-CCATGTCTAAGCG
1 TACGAAGTTCATTCCCA-GTCTAAGCG
*
31906285 TACGGAGTTCATTCCCAGTCTAAG
1 TACGAAGTTCATTCCCAGTCTAAG
31906309 ATCGAACTGG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (26 bp):
TACGAAGTTCATTCCCAGTCTAAGCG
Found at i:31906652 original size:26 final size:26
Alignment explanation
Indices: 31906622--31906674 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
31906612 GTTGACTTAG
*
31906622 GCATACGGAGTTCATCCCCAGTTTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
31906648 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
31906674 G
1 G
31906675 ATTGGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:31907175 original size:26 final size:26
Alignment explanation
Indices: 31907123--31907175 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
31907113 GTTGGATTAG
* * *
31907123 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCATATATAA
31907149 GCATACGAAGTTCATTCCCA-ATATAA
1 GCATACGAAGTTCATT-CCATATATAA
31907175 G
1 G
31907176 ATCAGATCAG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.32, C:0.23, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATATATAA
Found at i:31907521 original size:26 final size:26
Alignment explanation
Indices: 31907479--31907528 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
31907469 GACTTAGGCA
31907479 TACGGAGTTCATCCCCAGCCTAAGCG
1 TACGGAGTTCATCCCCAGCCTAAGCG
* * *
31907505 TACGGAGTTTATTCCCAGTCTAAG
1 TACGGAGTTCATCCCCAGCCTAAG
31907529 ATCGAACCTG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (26 bp):
TACGGAGTTCATCCCCAGCCTAAGCG
Found at i:31908176 original size:26 final size:26
Alignment explanation
Indices: 31908127--31908179 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
31908117 GTTGGCTTAG
*
31908127 GCATACGGAGTTCATTTCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
31908153 GCATATGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
31908179 G
1 G
31908180 ATCAGATCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:31908366 original size:26 final size:26
Alignment explanation
Indices: 31908337--31908389 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
31908327 GTTGACTTAG
* *
31908337 GCATATGGAGTTCATCCCCAGTGTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
31908363 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
31908389 G
1 G
31908390 ATCGAACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:31909985 original size:26 final size:26
Alignment explanation
Indices: 31909946--31910017 Score: 108
Period size: 26 Copynumber: 2.8 Consensus size: 26
31909936 TGGGTTGGCT
*
31909946 TAAGCATACAGAGTTCATTCTATGTC
1 TAAGCATACGGAGTTCATTCTATGTC
31909972 TAAGCATACGGAGTTCATTCTATGTC
1 TAAGCATACGGAGTTCATTCTATGTC
** *
31909998 TAAGTGTATGGAGTTCATTC
1 TAAGCATACGGAGTTCATTC
31910018 CCAGTCTAAA
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 42 1.00
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.36
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCTATGTC
Found at i:31910726 original size:26 final size:26
Alignment explanation
Indices: 31910679--31910730 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
31910669 GTTGACTTAG
* *
31910679 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCACAGTCTAA
**
31910705 GCATACAGAGTTCATTTACAGTCTAA
1 GCATACAGAGTTCATCCACAGTCTAA
31910731 ATCGGATTGG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATCCACAGTCTAA
Found at i:31913940 original size:26 final size:26
Alignment explanation
Indices: 31913901--31913972 Score: 108
Period size: 26 Copynumber: 2.8 Consensus size: 26
31913891 TGGGTTGGCT
*
31913901 TAAGCATACAGAGTTCATTCTATGTC
1 TAAGCATACGGAGTTCATTCTATGTC
31913927 TAAGCATACGGAGTTCATTCTATGTC
1 TAAGCATACGGAGTTCATTCTATGTC
** *
31913953 TAAGTGTATGGAGTTCATTC
1 TAAGCATACGGAGTTCATTC
31913973 CCAGTCTAAA
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 42 1.00
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.36
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCTATGTC
Found at i:31914698 original size:26 final size:26
Alignment explanation
Indices: 31914651--31914703 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
31914641 GTTGACTTAG
* *
31914651 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCACAGTCTAA
**
31914677 GCATACAGAGTTCATTTACAGTCTAA
1 GCATACAGAGTTCATCCACAGTCTAA
31914703 G
1 G
31914704 ATCGGATTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCACAGTCTAA
Found at i:31914985 original size:159 final size:156
Alignment explanation
Indices: 31914817--31915176 Score: 368
Period size: 156 Copynumber: 2.3 Consensus size: 156
31914807 AGCACGCCCA
* * * * * *
31914817 TTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTATGCCCCCG-TCGGACCAAGGCT
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG-ACCCGACCAGACCAAGG-T
* *
31914881 TG-TCGCAGC-GAGACCGACAGCACGCAGAGGGGGACCAGACCGATCCTCGGCTTACGCATTATG
64 TGCT-GCA-CAG-GACCGACAGCACGCAG-GGGGGACCAGACCGATCCTCAGCTTACGCATTATC
* * *
31914944 CCTCTCCGACCGGCTCAACGCCCGTACGCTCG
125 CCTCTCCGACCGGCTCAACGCCCGCACACACG
* * * * *
31914976 TTTCGTGGGTTGACTTAGGCATACGGATTTCATTCCCA-GTCTAAGATCGGACCAGACCGAGGTT
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGACCCGACCAGACCAAGGTT
* * * ** * *
31915040 GCTGCACAGGATCGACAGCATGCAGGGGGGATCAGGTCGGTCCTCAGCTTACGCATTCTCCCTCT
65 GCTGCACAGGACCGACAGCACGCAGGGGGGACCAGACCGATCCTCAGCTTACGCATTATCCCTCT
* * * * *
31915105 CTGGCCGGCTGAGCGCCTGCACACACG
130 CCGACCGGCTCAACGCCCGCACACACG
*
31915132 TTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
31915177 CATACAGAGT
Statistics
Matches: 165, Mismatches: 31, Indels: 13
0.79 0.15 0.06
Matches are distributed among these distances:
155 3 0.02
156 90 0.55
157 15 0.09
158 9 0.05
159 45 0.27
160 3 0.02
ACGTcount: A:0.19, C:0.29, G:0.29, T:0.24
Consensus pattern (156 bp):
TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCCGACCAGACCAAGGTTG
CTGCACAGGACCGACAGCACGCAGGGGGGACCAGACCGATCCTCAGCTTACGCATTATCCCTCTC
CGACCGGCTCAACGCCCGCACACACG
Found at i:31915113 original size:156 final size:157
Alignment explanation
Indices: 31914895--31915176 Score: 370
Period size: 156 Copynumber: 1.8 Consensus size: 157
31914885 GCAGCGAGAC
* *
31914895 CGACAGCACGCAGAGGGGGACCAGACCGATCCTCGGCTTACGCATTATGCCTCTCCGACCGGCTC
1 CGACAGCACGCAGAGGGGGACCAGACCGATCCTCAGCTTACGCATTATCCCTCTCCGACCGGCTC
* * * *
31914960 AACGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGATTTCATTCCCA-GTCTAAGATC
66 AACGCCCGCACACACGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAAGATC
31915024 GGACCAGACCGAGGTTGCTGCACAGGAT
130 GGACCAGACCGAGGTTGCTGCACAGGAT
* * ** * * * * *
31915052 CGACAGCATGCAG-GGGGGATCAGGTCGGTCCTCAGCTTACGCATTCTCCCTCTCTGGCCGGCTG
1 CGACAGCACGCAGAGGGGGACCAGACCGATCCTCAGCTTACGCATTATCCCTCTCCGACCGGCTC
* * * *
31915116 AGCGCCTGCACACACGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
66 AACGCCCGCACACACGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAG
31915177 CATACAGAGT
Statistics
Matches: 105, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
155 3 0.03
156 90 0.86
157 12 0.11
ACGTcount: A:0.19, C:0.29, G:0.28, T:0.23
Consensus pattern (157 bp):
CGACAGCACGCAGAGGGGGACCAGACCGATCCTCAGCTTACGCATTATCCCTCTCCGACCGGCTC
AACGCCCGCACACACGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGATCG
GACCAGACCGAGGTTGCTGCACAGGAT
Found at i:31915186 original size:26 final size:26
Alignment explanation
Indices: 31915150--31915202 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31915140 GTTGGCTTAG
*
31915150 GCATACGGAGTTCATTC-CATGTCTAA
1 GCATACAGAGTTCATTCGCA-GTCTAA
31915176 GCATACAGAGTTCATTCGCAGTCTAA
1 GCATACAGAGTTCATTCGCAGTCTAA
31915202 G
1 G
31915203 ATTGGATCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCGCAGTCTAA
Found at i:31915546 original size:184 final size:182
Alignment explanation
Indices: 31915004--31915546 Score: 583
Period size: 185 Copynumber: 3.0 Consensus size: 182
31914994 GCATACGGAT
* *
31915004 TTCATTCCCAGTCTAAGATCGGACCAGACCGA-GGTTGCTGCA-CAGGATCGACAGCATGCAGGG
1 TTCATTCCCAGTCTAAGATCGGACTAGACTGAGGGTTGC-GCAGCAGGATCGACAGCATGCAGGG
* * *
31915067 GGGATCAGGTCGGTCCTCAGCTTACGCATTCTCCCTCTCTGGCCGGCTGAGCGCCTGCACACACG
65 GGGATCAGGCCGATCCTCAGCTTACGCATTCTGCCTCTCTGGCCGGCTGAGCGCC-GCACACACG
* * *
31915132 TTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAG
129 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCTATGTCTAAGCATACAAAG
* * * * * * * *
31915186 TTCATTCGCAGTCTAAGATTGGA-TCGAATTGAGGGTTGCGGCAGCAGGA-CCAGTAGCACGTAA
1 TTCATTCCCAGTCTAAGATCGGACTAG-ACTGAGGGTTGC-GCAGCAGGATCGA-CAGCATG-CA
** * * * * *** * *
31915249 AAGGGGATCAGGCTGATTCTCGGCTTACGCATTTTGCCTCTCTGATTGACTGAGCACCCGCACAC
62 GGGGGGATCAGGCCGATCCTCAGCTTACGCATTCTGCCTCTCTGGCCGGCTGAGC-GCCGCACAC
* * **
31915314 TCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCACCCT-TAGTCTAAGCATACAAAG
126 ACGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCTAT-GTCTAAGCATACAAAG
* *
31915371 TTCATTCCCATTCTAAGATCGGACTAGACTGAGGGTTGCGATAGCAGGATCGACAGCATGCAGGG
1 TTCATTCCCAGTCTAAGATCGGACTAGACTGAGGGTTGCG-CAGCAGGATCGACAGCATGCAGGG
* * ** * * * *
31915436 GGGATCGGGCCAATCCTCAGCTTGGGCATTCTGCCTCTGTGGCCGGTTGAGCGCTCGCACGCCCG
65 GGGATCAGGCCGATCCTCAGCTTACGCATTCTGCCTCTCTGGCCGGCTGAGCGC-CGCACACACG
*
31915501 TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCTATGTCTAAGC
129 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCTATGTCTAAGC
31915547 CTCAGTCAGA
Statistics
Matches: 284, Mismatches: 65, Indels: 22
0.77 0.18 0.06
Matches are distributed among these distances:
181 1 0.00
182 24 0.08
183 12 0.04
184 100 0.35
185 141 0.50
186 6 0.02
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.26
Consensus pattern (182 bp):
TTCATTCCCAGTCTAAGATCGGACTAGACTGAGGGTTGCGCAGCAGGATCGACAGCATGCAGGGG
GGATCAGGCCGATCCTCAGCTTACGCATTCTGCCTCTCTGGCCGGCTGAGCGCCGCACACACGTT
TCGTGGGTTGGCTTAGGCATACGGAGTTCATTCTATGTCTAAGCATACAAAG
Found at i:31915872 original size:342 final size:341
Alignment explanation
Indices: 31915305--31916045 Score: 839
Period size: 342 Copynumber: 2.2 Consensus size: 341
31915295 TGACTGAGCA
* * * *
31915305 CCCGCACACTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCA-CCCTTAGTCTAAGCATACAA
1 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCT-GTCTAAGCATACAA
* * * * *
31915369 AGTTCATTCCCATTCTAAGATCGGACTAGACTGAGGGTTGCGATAGCAGGATCGACAGCATGCAG
65 ACTTCATTCCCAGTCTAAGATCGAACTAGACCGAGGGTTACGATAGCAGGATCGACAGCATGCAG
* * * ** * * * *
31915434 GGGGGATCGGGCCAATCCTCAGCTTGGGCATTCTGCCTCTGTGGCCGGTTGAGCGCTCGCACGCC
130 GGGGAACCAGGCCAATCCTCAGCTTGGGCATTCTGCCTCTCCGACCGGCTGAGCACCCGCACGCC
* * *
31915499 CGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCTATGTCTAAGCCTCAG-TCAGACCGAGG
195 CGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCT-AGACCGAGG
* * ** * *
31915563 GTAGTGGCAGCAGGACCGGTAC-CACGCA-AAGGGGGATTGGGTCGATCCTTGGCTTGTGCATTC
259 GTAGT-GCAACAGGACC--TACACACGCAGAA-GAGGACCGGGTCGATCCTCGGCTTGTGCATTA
* * *
31915626 TGCCTTTCTGGCCAGCTGAGTG
320 TGCCTCTCCGGCCAGCTCAGTG
* * ***
31915648 CCCGCACGCTCGTTTCGTGGGTTGACTTAGACAAACGGAGTTCATCCCCTGTCTAAGCATATGGA
1 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCTGTCTAAGCATACAAA
*
31915713 CTTCATTCCCAGTCTATGATCGAA-TCAGACCGA-GGTTACGATAGCAGGATCGACAGCATGCAG
66 CTTCATTCCCAGTCTAAGATCGAACT-AGACCGAGGGTTACGATAGCAGGATCGACAGCATGCAG
** * * * **
31915776 GGGGAACCAGGCTGAT-TTCTGACTTGTGCATTCTGCCTCTCCGACCGGCTGAGCACCCGCATTC
130 GGGGAACCAGGCCAATCCTCAG-CTTGGGCATTCTGCCTCTCCGACCGGCTGAGCACCCGCACGC
*
31915840 CCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACCGAGG
194 CCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTAGACCGAGG
* * *
31915905 GTTGTGCAACGGGACCTACAGCACGCAGAAGAGGACCGGGTCGATCCTCGGTTTGTGCATTATGC
259 GTAGTGCAACAGGACCTACA-CACGCAGAAGAGGACCGGGTCGATCCTCGGCTTGTGCATTATGC
* *
31915970 CTCTCCGGTCGGCTCAGTG
323 CTCTCCGGCCAGCTCAGTG
* ** * ** * *
31915989 CCCGAACGCTTATTTTGTGGGTTGACTTAGGCATACAAAGTTCATTCCCAGTCTAAG
1 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCTGTCTAAG
31916046 ATCAGACTAG
Statistics
Matches: 332, Mismatches: 59, Indels: 16
0.82 0.14 0.04
Matches are distributed among these distances:
339 3 0.01
341 108 0.33
342 139 0.42
343 78 0.23
344 4 0.01
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (341 bp):
CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCTGTCTAAGCATACAAA
CTTCATTCCCAGTCTAAGATCGAACTAGACCGAGGGTTACGATAGCAGGATCGACAGCATGCAGG
GGGAACCAGGCCAATCCTCAGCTTGGGCATTCTGCCTCTCCGACCGGCTGAGCACCCGCACGCCC
GTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTAGACCGAGGGT
AGTGCAACAGGACCTACACACGCAGAAGAGGACCGGGTCGATCCTCGGCTTGTGCATTATGCCTC
TCCGGCCAGCTCAGTG
Found at i:31916386 original size:185 final size:184
Alignment explanation
Indices: 31916027--31916389 Score: 458
Period size: 185 Copynumber: 2.0 Consensus size: 184
31916017 AGGCATACAA
* * * * * *
31916027 AGTTCATTCCCAGTCTAAGATCAGACTAGAGCGAGGGTTGCGACAGCAAGATTGACAGCACGTAG
1 AGTTCATTCCCAGTCGAAGATCAAACCAGACCGAGGGTTGCGACAGCAAGATCGACAACACGTAG
* * * * * *
31916092 GGGGGATCAAATCGGTCCCTGACTTGCGCATTCTACCTCTTCGACCGGCTAAGCGCCTGCACGCT
66 GGGGGACCAAACCGATCCCTGACTTGCGCATTCTACCTCTCCGACCGACTAAGCGCCCGCACGCT
* *
31916157 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCAATGTCTAAGCATAAGG
131 CATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCAATGTCTAAGCATAAGG
* *
31916211 AGTTCATTCCCAGTCGAAGATCAAACCGGACCGAGGGTTGCGACAGCAGGATCGACAACACGTAG
1 AGTTCATTCCCAGTCGAAGATCAAACCAGACCGAGGGTTGCGACAGCAAGATCGACAACACGTA-
*** * * * * * * *
31916276 GGGGGGACCGGGCCGAT-CCTCGGCTTGCGCATTCTGCCTCTCCGGCTGACTGAGTGCCCGTACG
65 GGGGGGACCAAACCGATCCCT-GACTTGCGCATTCTACCTCTCCGACCGACTAAGCGCCCGCACG
*
31916340 CTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
129 CTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCAATGTCTAAGC
31916390 CCCAGTCCGA
Statistics
Matches: 150, Mismatches: 27, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
184 59 0.39
185 91 0.61
ACGTcount: A:0.22, C:0.26, G:0.29, T:0.23
Consensus pattern (184 bp):
AGTTCATTCCCAGTCGAAGATCAAACCAGACCGAGGGTTGCGACAGCAAGATCGACAACACGTAG
GGGGGACCAAACCGATCCCTGACTTGCGCATTCTACCTCTCCGACCGACTAAGCGCCCGCACGCT
CATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCAATGTCTAAGCATAAGG
Found at i:31916564 original size:26 final size:26
Alignment explanation
Indices: 31916534--31916586 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
31916524 GTTGACATAG
31916534 GCATATGGAGTTCATCCCTAGCCTAA
1 GCATATGGAGTTCATCCCTAGCCTAA
31916560 GCATATGGAGTTCATCCCTAGCCTAA
1 GCATATGGAGTTCATCCCTAGCCTAA
31916586 G
1 G
31916587 ATCGATCCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATATGGAGTTCATCCCTAGCCTAA
Found at i:31917344 original size:26 final size:26
Alignment explanation
Indices: 31917308--31917360 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
31917298 GTTGGCTTAG
31917308 GCATACAGAGTCCATCCCCAGTCTAA
1 GCATACAGAGTCCATCCCCAGTCTAA
* * *
31917334 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTCCATCCCCAGTCTAA
31917360 G
1 G
31917361 ATCAAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.30, G:0.19, T:0.23
Consensus pattern (26 bp):
GCATACAGAGTCCATCCCCAGTCTAA
Found at i:31917578 original size:159 final size:159
Alignment explanation
Indices: 31917334--31917679 Score: 428
Period size: 159 Copynumber: 2.2 Consensus size: 159
31917324 CCCAGTCTAA
** * * *
31917334 GCATACGGAGTTCATTCCCA-GTCTAAGATCAAACCAGACCGAGGGTTGTGGTAGCAAGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGTAGCAAGACCGAC
* * * *
31917398 AGCACGCAGGGGGGGACCGGGTCGAT-CCTCGACTTACGCATTCTGCCTCTTCGGCCGGCTGAGC
65 AGCACGCAGAGGGGGACCGGGTCGATCCCT-AACTTACGCATTCTACCTCTCCGGCCGGCTGAGC
*
31917462 ACCCGCACACCT-GTTTCGTGGGTTGGCTTTG
129 ACCCGCAC-CCTCGTTTCGTGGGTTGGCTTAG
* * ***
31917493 GCATAGGGAGTTCATTTCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGTAGTGGGACCGACA
1 GCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGTAGCAAGACCGACA
* * ** * **
31917558 GCACGCAGAGGGGGATCGGGTTGATCCCTAACTTGTGCATTCTACCTCTCCGGTCGGCTGAGTGC
66 GCACGCAGAGGGGGACCGGGTCGATCCCTAACTTACGCATTCTACCTCTCCGGCCGGCTGAGCAC
* *
31917623 CCGCACGCTCGTTTTGTGGGTTGGCTTAG
131 CCGCACCCTCGTTTCGTGGGTTGGCTTAG
31917652 GCATACGGAGTTCATTCCATGTCTAAGC
1 GCATACGGAGTTCATTCCATGTCTAAGC
31917680 GTACAGAGTT
Statistics
Matches: 158, Mismatches: 26, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
158 4 0.03
159 151 0.96
160 3 0.02
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.24
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGTAGCAAGACCGACA
GCACGCAGAGGGGGACCGGGTCGATCCCTAACTTACGCATTCTACCTCTCCGGCCGGCTGAGCAC
CCGCACCCTCGTTTCGTGGGTTGGCTTAG
Found at i:31919562 original size:11 final size:11
Alignment explanation
Indices: 31919546--31919577 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
31919536 CTCGGGGCAC
*
31919546 CATCGTTGGAG
1 CATCGTCGGAG
31919557 CATCGTCGGAG
1 CATCGTCGGAG
31919568 CATCGTCGGA
1 CATCGTCGGA
31919578 TAGCCTAACC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.19, C:0.25, G:0.34, T:0.22
Consensus pattern (11 bp):
CATCGTCGGAG
Found at i:31920193 original size:26 final size:26
Alignment explanation
Indices: 31920157--31920209 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
31920147 GTTGACTTAG
*
31920157 GCATAAGGAGTTCATCCCCAGTGTAA
1 GCATAAGGAGTTCATCCCCAGTCTAA
* *
31920183 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATCCCCAGTCTAA
31920209 G
1 G
31920210 ATCGGATCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATAAGGAGTTCATCCCCAGTCTAA
Found at i:31920884 original size:182 final size:182
Alignment explanation
Indices: 31920574--31920928 Score: 489
Period size: 182 Copynumber: 2.0 Consensus size: 182
31920564 TGAGGGTTGC
** * *
31920574 AGTAGCAAGACTAGCAACAGGATCGACAGCATTCAGGGGTGGACCGAGTTGATCCTCGACTTTCG
1 AGTAGCAAGACTAGCAACAGGATCGACAGCATTCAGGGGTGGACCGAACTGATCCCCGACTTTCA
* * ** *
31920639 CATTCTGCCTCTCCAGCTGGCCTCTTCGGCCTACTGAGCACTTGCACGCTCGTTTCATGGGTTGA
66 CATTCTACCTCTCCAGCCGGCCTCTTCGGCCTACTGAGCACCCGCACACTCGTTTCATGGGTTGA
* * *
31920704 CTTAGGCATATAGAGTTCGTCCCCAGTCTAAGATCGGATCGAGGGTTGTAGT
131 CTTAGGCATACAGAGCTCATCCCCAGTCTAAGATCGGATCGAGGGTTGTAGT
* * *
31920756 AGTAGCAGGACTAGCAGCAGGATCGACAGCATGT-AGGGGTGGACTGAACTGATCCCCGACTTTC
1 AGTAGCAAGACTAGCAACAGGATCGACAGCAT-TCAGGGGTGGACCGAACTGATCCCCGACTTTC
* * ** *
31920820 ACATTCTACCTCTTC-GACCGGCCTCTTCGGCCTGCTGAGTGCCCGCACACTCGTTTCGTGGGTT
65 ACATTCTACCTCTCCAG-CCGGCCTCTTCGGCCTACTGAGCACCCGCACACTCGTTTCATGGGTT
*
31920884 GACTTAGGCATACGGAGCTCATCCCCAGTCTAAGATCGGATCGAG
129 GACTTAGGCATACAGAGCTCATCCCCAGTCTAAGATCGGATCGAG
31920929 CTGAGGGTTG
Statistics
Matches: 150, Mismatches: 21, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
181 1 0.01
182 148 0.99
183 1 0.01
ACGTcount: A:0.21, C:0.27, G:0.27, T:0.25
Consensus pattern (182 bp):
AGTAGCAAGACTAGCAACAGGATCGACAGCATTCAGGGGTGGACCGAACTGATCCCCGACTTTCA
CATTCTACCTCTCCAGCCGGCCTCTTCGGCCTACTGAGCACCCGCACACTCGTTTCATGGGTTGA
CTTAGGCATACAGAGCTCATCCCCAGTCTAAGATCGGATCGAGGGTTGTAGT
Found at i:31921086 original size:26 final size:26
Alignment explanation
Indices: 31921050--31921101 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
31921040 TTGACTTAGA
31921050 CATACAGAGTTC-ATCCCCAGTCTAAG
1 CATACAGAGTTCAAT-CCCAGTCTAAG
*
31921076 CATACGGAGTTCAATCCCAGTCTAAG
1 CATACAGAGTTCAATCCCAGTCTAAG
31921102 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.31, C:0.29, G:0.17, T:0.23
Consensus pattern (26 bp):
CATACAGAGTTCAATCCCAGTCTAAG
Found at i:31921676 original size:26 final size:26
Alignment explanation
Indices: 31921646--31921698 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
31921636 GTTGAACTAG
31921646 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* * *
31921672 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
31921698 G
1 G
31921699 ATCGAACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:31922177 original size:26 final size:26
Alignment explanation
Indices: 31922148--31922217 Score: 131
Period size: 26 Copynumber: 2.7 Consensus size: 26
31922138 GTTGCCTTAG
*
31922148 GCATACGGAGTTCATTCCTTGTCTAA
1 GCATACAGAGTTCATTCCTTGTCTAA
31922174 GCATACAGAGTTCATTCCTTGTCTAA
1 GCATACAGAGTTCATTCCTTGTCTAA
31922200 GCATACAGAGTTCATTCC
1 GCATACAGAGTTCATTCC
31922218 CAGTCAAAGA
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 43 1.00
ACGTcount: A:0.26, C:0.24, G:0.17, T:0.33
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTTGTCTAA
Found at i:31922886 original size:158 final size:158
Alignment explanation
Indices: 31922641--31923239 Score: 519
Period size: 158 Copynumber: 3.8 Consensus size: 158
31922631 AGCAAGATTG
* * * * * * *
31922641 GCAGCACGCAGGGGGGATTGGGCCGATCCCCGACTTGGGCATTCTGCCTC-TCTGGCCTGCTGAG
1 GCAGCACGCAGAGGGGATCGGGTCGATCCCCGACTTGCGCATTATGCCTCTTC-GGCTTGCTCAG
* * * *
31922705 CGCCTGCATGCCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG
65 CGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG
* * *
31922770 CCTA-ACCAAGGGTTGTGGTAGTTGGACCA
130 CC-AGACCAAGAGTTGTGGCAGTAGGACCA
* *
31922799 GCAGCACGCAGAGGGGATCGGATCGATCCCCGACTTGCGCATTATGCCTCTTCGGCTTACTCAGC
1 GCAGCACGCAGAGGGGATCGGGTCGATCCCCGACTTGCGCATTATGCCTCTTCGGCTTGCTCAGC
* * *
31922864 TCCCGCGCGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGC
66 GCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGC
* *
31922929 CAGACCAAGAGTTGTGGCAGTAGGATCG
131 CAGACCAAGAGTTGTGGCAGTAGGACCA
* * * * * * *
31922957 GCGGCACGTAGAGGGGGACCGGGTCGATCCTCGGCTTGCGCATTATACCTCTTCGG-TCGGCTCA
1 GCAGCACGCAGA-GGGGATCGGGTCGATCCCCGACTTGCGCATTATGCCTCTTCGGCT-TGCTCA
* * * * ** * ***
31923021 GCGCCCGCACACTCATTTCGTGGGTTGACTTATGCATACAGAGTTCATTCCCA-ATCTAAG-ATT
64 GCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCC
* * * * ** * *
31923084 GGACCAGATCGAGGGTTGCAGCAGCAGGATCA
128 AG-CCAGACCAAGAGTTGTGGCAGTAGGACCA
* * * ** * * ** *
31923116 ACAGCACGCAG-GGGAGACCAGGTCGATCCCCTG-CTTATGCATTCTGCCTCTCCGGCCGGCTGA
1 GCAGCACGCAGAGGG-GATCGGGTCGATCCCC-GACTTGCGCATTATGCCTCTTCGGCTTGCTCA
* * * * * *
31923179 GCGCCCGCACACTCGTTTCATGGGTTGGCTTAGGTATACGGAGTTCATTCCATGTCTAAGC
64 GCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
31923240 ATACGGAGTT
Statistics
Matches: 360, Mismatches: 70, Indels: 21
0.80 0.16 0.05
Matches are distributed among these distances:
157 7 0.02
158 229 0.64
159 121 0.34
160 3 0.01
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.24
Consensus pattern (158 bp):
GCAGCACGCAGAGGGGATCGGGTCGATCCCCGACTTGCGCATTATGCCTCTTCGGCTTGCTCAGC
GCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGC
CAGACCAAGAGTTGTGGCAGTAGGACCA
Found at i:31923071 original size:159 final size:158
Alignment explanation
Indices: 31922724--31923239 Score: 538
Period size: 158 Copynumber: 3.3 Consensus size: 158
31922714 GCCCGTTTTG
*
31922724 TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCTA-ACCAAGGGTTGTGG
1 TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCC-AGACCAAGGGTTGTGG
* * * * * *
31922788 TAGTTGGACCAGCAGCACGCAGA-GGGGATCGGATCGATCCCCGACTTGCGCATTATGCCTCTTC
65 CAGTAGGATCAGCAGCACGCAGAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTTC
** * * * *
31922852 GGCTTACTCAGCTCCCGCGCGCCCATTTCA
130 GGC-GGCTCAGCGCCCGCACACTCATTTCA
* *
31922882 TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAGAGTTGTGGC
1 TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAGGGTTGTGGC
* * * * *
31922947 AGTAGGATCGGCGGCACGTAGAGGGGGACCGGGTCGATCCTCGGCTTGCGCATTATACCTCTTCG
66 AGTAGGATCAGCAGCACGCAGAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTTCG
*
31923012 GTCGGCTCAGCGCCCGCACACTCATTTCG
131 G-CGGCTCAGCGCCCGCACACTCATTTCA
* * * * **** * * **
31923041 TGGGTTGACTTATGCATACAGAGTTCATTCCCA-ATCTAAG-ATTGGACCAGATCGAGGGTTGCA
1 TGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAG-CCAGACCAAGGGTTGTG
* * * * * ** * *
31923104 GCAGCAGGATCAACAGCACGCAG-GGGAGACCAGGTCGATCCCCTGCTTATGCATTCTGCCTCTC
64 GCAGTAGGATCAGCAGCACGCAGAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTT
* *
31923168 CGGCCGGCTGAGCGCCCGCACACTCGTTTCA
129 CGG-CGGCTCAGCGCCCGCACACTCATTTCA
*
31923199 TGGGTTGGCTTAGGTATACGGAGTTCATTCCATGTCTAAGC
1 TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
31923240 ATACGGAGTT
Statistics
Matches: 295, Mismatches: 56, Indels: 13
0.81 0.15 0.04
Matches are distributed among these distances:
157 4 0.01
158 169 0.57
159 118 0.40
160 4 0.01
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.24
Consensus pattern (158 bp):
TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAGGGTTGTGGC
AGTAGGATCAGCAGCACGCAGAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTTCG
GCGGCTCAGCGCCCGCACACTCATTTCA
Found at i:31924120 original size:26 final size:26
Alignment explanation
Indices: 31924091--31924143 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31924081 GTTGGCTTAG
31924091 GCATACGGAGTTCATT-CCACGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
31924117 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
31924143 G
1 G
31924144 ATCGGACTAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:31924799 original size:159 final size:158
Alignment explanation
Indices: 31924634--31925158 Score: 481
Period size: 159 Copynumber: 3.3 Consensus size: 158
31924624 CCGGTACACC
*
31924634 CATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCGTGTCTAAGCCCCAGCCGGACCGAGGG
1 CATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGG
**
31924699 TTGTGGCAGCTGGACCAGCAACACACAGAGGGGGATCGGGCCGATCCCTGGCTTGCGCATTATGC
66 TTGTGGCAGCTGGACCAG-AACATGCAGAGGGGGATCGGGCCGATCCCTGGCTTGCGCATTATGC
** * *
31924764 CTCTTCGGCTTGCTCAGCACCCTCACGCC
130 CTCTTCGGCCAGCTCAGCACCCACACGCT
* * * * *
31924793 CGTTTCGTGGGTTGGCTTAGGTATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACCAAAGG
1 CATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGG
* * * * * **
31924858 TTGTGGCTG-TGGGACC-GATAGCATGCATAAGGGGATCAGGTCGAT-CCTCGGCTTATGCATTA
66 TTGTGGCAGCT-GGACCAGA-A-CATGCAGAGGGGGATCGGGCCGATCCCT-GGCTTGCGCATTA
* * * * * *
31924920 TGCCTCTTCGACCGGCTCAGCTCCCGCTCGTT
127 TGCCTCTTCGGCCAGCTCAGCACCCACACGCT
* * * *** ** *
31924952 CATTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCA-GTCTAAGATTGCA-CCAAATCGAG
1 CATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAG-CCCCAGCCGGACCGAG
* * * ** *
31925015 GGTTGTGGCAGCAGGATCA-ATAGCATGCAG-GGAGGGATCGGGCCAATCCCCAGCTTGCACATT
64 GGTTGTGGCAGCTGGACCAGA-A-CATGCAGAGG-GGGATCGGGCCGATCCCTGGCTTGCGCATT
* * *
31925078 CTGCCTC-TCTGGCCAGTTGAGCACCCACACGCT
126 ATGCCTCTTC-GGCCAGCTCAGCACCCACACGCT
** *
31925111 CATTTTATGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGC
1 CATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
31925159 ATATGGAGTT
Statistics
Matches: 289, Mismatches: 65, Indels: 25
0.76 0.17 0.07
Matches are distributed among these distances:
157 1 0.00
158 12 0.04
159 269 0.93
160 7 0.02
ACGTcount: A:0.19, C:0.26, G:0.29, T:0.26
Consensus pattern (158 bp):
CATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGG
TTGTGGCAGCTGGACCAGAACATGCAGAGGGGGATCGGGCCGATCCCTGGCTTGCGCATTATGCC
TCTTCGGCCAGCTCAGCACCCACACGCT
Found at i:31925167 original size:26 final size:26
Alignment explanation
Indices: 31925131--31925183 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
31925121 GTTGGCTTAG
31925131 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATATGGAGTTCATTCCCA-GTCTAA
31925157 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
31925183 G
1 G
31925184 ATTTTAAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:31925865 original size:26 final size:26
Alignment explanation
Indices: 31925835--31925887 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
31925825 GTTGACTTAG
*
31925835 GCATACGTAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
31925861 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
31925887 G
1 G
31925888 ACGGACTGGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:31926342 original size:26 final size:26
Alignment explanation
Indices: 31926292--31926344 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
31926282 GTTGGCTTAG
* *
31926292 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATATCTAA
31926318 GCATACAGAGTTCATTCCCA-ATCTAA
1 GCATACAGAGTTCATT-CCATATCTAA
31926344 G
1 G
31926345 ATCGGACCGC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Found at i:31926499 original size:184 final size:181
Alignment explanation
Indices: 31926266--31926858 Score: 575
Period size: 184 Copynumber: 3.3 Consensus size: 181
31926256 CACCCGTACA
*
31926266 CACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTC
1 CACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTC
* *
31926331 ATTCCCAATCTAAGATCGGACCGCACCGAGGGTCGGGGTAGCAGGATCGACAGCACGCAGGGGGG
66 ATTCCCAGTCTAAGAT-GGA-CGCACCGAGGGTCGCGGTAGCAGGATCGACAGCACGCAGGGGGG
* *
31926396 ACTAGACCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCG
129 ACT-GGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCG
* * ** *
31926450 CACGCTCATTTCATGGGTTGGCTTAGGCATATGGAGTTCATTGCATGTCTAAG---ACCCAG-CC
1 CACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTC
** ** ** * * * * * *
31926511 AGACTGAGGGT-TG-TGGTA-GCA---A--GAC-CGATAGCGGGATCAACAGCACGTAGAGGGGG
66 ATTCCCAGTCTAAGATGG-ACGCACCGAGGGTCGCGGTAGCAGGATCGACAGCACGCAG-GGGGG
* * * * ** *
31926567 ACCGGGCTGATCCCTGACTTGCGCATTATGCCTCTCCGACCGGTTGAGCGCCCG
129 A-CTGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCG
* * * *
31926621 CACGCTCATTTTATGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGCATACGGAGTT
1 CACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAAGCATACAGAGTT
* * * * * * *
31926685 CATTCCCAGTCTAAGATTGAACTGGACCGAGGGTTGTGGTAGTAGGATCGGCAGCACGCAAGGGG
65 CATTCCCAGTCTAAGA-TGGAC-GCACCGAGGGTCGCGGTAGCAGGATCGACAGCACGCAGGGGG
* *
31926750 GATCTGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCTGGTCGGCTGAGTGCCCG
128 GA-CTGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCG
** * * *
31926805 CGTGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
1 CACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
31926859 CCCAGCCGAA
Statistics
Matches: 315, Mismatches: 74, Indels: 40
0.73 0.17 0.09
Matches are distributed among these distances:
170 20 0.06
171 95 0.30
172 3 0.01
173 1 0.00
174 4 0.01
175 6 0.02
176 4 0.01
177 3 0.01
178 4 0.01
179 3 0.01
180 5 0.02
181 4 0.01
182 1 0.00
183 3 0.01
184 142 0.45
185 17 0.05
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (181 bp):
CACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTC
ATTCCCAGTCTAAGATGGACGCACCGAGGGTCGCGGTAGCAGGATCGACAGCACGCAGGGGGGAC
TGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCG
Found at i:31926683 original size:26 final size:26
Alignment explanation
Indices: 31926647--31926699 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
31926637 GTTGACTTAG
31926647 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
31926673 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
31926699 G
1 G
31926700 ATTGAACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:31926686 original size:355 final size:342
Alignment explanation
Indices: 31926266--31927016 Score: 957
Period size: 355 Copynumber: 2.2 Consensus size: 342
31926256 CACCCGTACA
* *
31926266 CACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTC
1 CACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCA-GTCTAAGCATACAGAGTTC
* *
31926331 ATTCCCAATCTAAGATCGGACCGCACCGAGGGTCGGGGTAGCAGGATCGACAGCACGCAGGGGGG
65 ATTCCCAATCTAAGATCGAACCGCACCGAGGGTCGGGGTAGCAGGATCGACAGCACGCAAGGGGG
*
31926396 A-CTAGACCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCATT
130 ATCT-GACCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCCCATT
* *
31926460 TCATGGGTTGGCTTAGGCATATGGAGTTCATTGCATGTCTAAGACCCAGCC-AGACTGAGGGTTG
194 TCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGACCCAGCCGA-ACTGAGGGTTG
* * * *
31926524 TGGTAGCAAGACCGATAGCGGGATCAACAGCACGTAGAGGGGGACCGGGCTGATCCCTGACTTGC
258 TGGTAGC-AG---G--A-CGGG-----CAGCACGCAGAGGGGGACCGGGCTAATCCCCGACTGGC
* *
31926589 GCATTATGCCTCTCCGACCGGTTGAGCGCCCG
311 GCATTATGCCTCTCCGACCGGCTCAGCGCCCG
* * *
31926621 CACGCTCATTTTATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTC
1 CACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT-CCCAGTCTAAGCATACAGAGTTC
* * * * * * * *
31926686 ATTCCCAGTCTAAGATTGAACTGGACCGAGGGTTGTGGTAGTAGGATCGGCAGCACGCAAGGGGG
65 ATTCCCAATCTAAGATCGAACCGCACCGAGGGTCGGGGTAGCAGGATCGACAGCACGCAAGGGGG
* * * * **
31926751 ATCTGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCTGGTCGGCTGAGTGCCCGCGTGCCCATTT
130 ATCTGACCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCCCATTT
* * *
31926816 CGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACTGAGGGTTGTT
195 CATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGACCCAGCCGAACTGAGGGTTGTG
* * * *
31926881 GTAGCAGGACTGGCAGCACGCAGATGGGGACCGGGCTAATCCCCGGCTGGCGCATTATGCCTCTT
260 GTAGCAGGACGGGCAGCACGCAGAGGGGGACCGGGCTAATCCCCGACTGGCGCATTATGCCTCTC
* * *
31926946 TGACTGGCTCAGTGCCCG
325 CGACCGGCTCAGCGCCCG
* *
31926964 CACGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAG
1 CACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCA-TCCCAGTCTAAG
31927017 ATCATACCAG
Statistics
Matches: 348, Mismatches: 44, Indels: 20
0.84 0.11 0.05
Matches are distributed among these distances:
343 105 0.30
344 1 0.00
348 3 0.01
349 1 0.00
351 1 0.00
354 2 0.01
355 229 0.66
356 6 0.02
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (342 bp):
CACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCAGTCTAAGCATACAGAGTTCA
TTCCCAATCTAAGATCGAACCGCACCGAGGGTCGGGGTAGCAGGATCGACAGCACGCAAGGGGGA
TCTGACCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCCCATTTC
ATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGACCCAGCCGAACTGAGGGTTGTGG
TAGCAGGACGGGCAGCACGCAGAGGGGGACCGGGCTAATCCCCGACTGGCGCATTATGCCTCTCC
GACCGGCTCAGCGCCCG
Found at i:31926977 original size:159 final size:160
Alignment explanation
Indices: 31926709--31927176 Score: 517
Period size: 159 Copynumber: 3.0 Consensus size: 160
31926699 GATTGAACTG
* * *
31926709 GACCGAGGGTTGTGGTAGTAGGATCGGCAGCACGCA-AGGGGGATCTGGCTGATCCCCGGCTTGC
1 GACCGAGGGTTGTGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCGGGCTGATCCCCGGCTTGC
* * ** *
31926773 GCATTCTGCCTCTCTGGTCGGCTGAGTGCCCGCGTGCCCATTTCGTGGGTTGGCTTAGGCATAGG
66 GCATTATGCCTCTCTGGTCGGCTCAGTGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATAGG
* *
31926838 GAGTTCATTCCATGTCTAAGCCCCA-GCC-
131 GAGTTCATTCCATGTCTAAGCACCATACCA
* * * * *
31926866 GAACTGAGGGTTGTTGTAGCAGGA-CTGGCAGCACGCAGATGGGGACCGGGCTAATCCCCGGCTG
1 G-ACCGAGGGTTGTGGTAGCAGGATC-GGCAGCACGCAGAGGGGGACCGGGCTGATCCCCGGCTT
* * * * *
31926930 GCGCATTATGCCTCT-TTGACTGGCTCAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTATGCAT
64 GCGCATTATGCCTCTCTGGTC-GGCTCAGTGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCAT
* *
31926994 ACGGAGTTCATTCCCA-GTCTAAG-ATCATACCA
128 AGGGAGTTCATT-CCATGTCTAAGCACCATACCA
* * *
31927026 GACCAAGGGTTGTGGCAGCAGGATCGGCAGCACGTAG-GGGGGACCGGG-TCGATCCCCGGCTTG
1 GACCGAGGGTTGTGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCGGGCT-GATCCCCGGCTTG
* * * * * *
31927089 CACGTTTTGCTTCTCCGGTCGG-TCGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCAT-
65 CGCATTATGCCTCTCTGGTCGGCTC-AGTGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATA
31927152 GCGGAGTTCATTCCATGTCTAAGCA
129 G-GGAGTTCATTCCATGTCTAAGCA
31927177 TACGGAGCTC
Statistics
Matches: 255, Mismatches: 42, Indels: 26
0.79 0.13 0.08
Matches are distributed among these distances:
157 8 0.03
158 119 0.47
159 123 0.48
160 5 0.02
ACGTcount: A:0.16, C:0.27, G:0.32, T:0.24
Consensus pattern (160 bp):
GACCGAGGGTTGTGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCGGGCTGATCCCCGGCTTGC
GCATTATGCCTCTCTGGTCGGCTCAGTGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATAGG
GAGTTCATTCCATGTCTAAGCACCATACCA
Found at i:31927157 original size:158 final size:156
Alignment explanation
Indices: 31926673--31927174 Score: 523
Period size: 158 Copynumber: 3.2 Consensus size: 156
31926663 CCCAGTCTAA
* * *
31926673 GCATACGGAGTTCATTCCCA-GTCTAAGATTGAACTGGACCGAGGGTTGTGGTAGTAGGATCGGC
1 GCATACGGAGTTCATT-CCATGTCTAAGA-TCAAC-CGACCGAGGGTTGTGGTAGCAGGATCGGC
* * * *
31926737 AGCACGCAAGGGGGATCTGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCTGGTCGG-CTGAGTG
63 AGCACGCAGGGGGGACCGGGCTGATCCCCGGCTTGCGCATTATGCCTCTCTGGTCGGTC-GAGTG
** *
31926801 CCCGCGTGCCCATTTCGTGGGTTGGCTTAG
127 CCCGCACGCTCATTTCGTGGGTTGGCTTAG
* ** * * *
31926831 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACTGAGGGTTGTTGTAGCAGGA-CTGGC
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAACCG-ACCGAGGGTTGTGGTAGCAGGATC-GGC
* * * * *
31926895 AGCACGCAGATGGGGACCGGGCTAATCCCCGGCTGGCGCATTATGCCTCT-TTGACTGGCTC-AG
63 AGCACGCAG-GGGGGACCGGGCTGATCCCCGGCTTGCGCATTATGCCTCTCTGGTC-GG-TCGAG
* * *
31926958 TGCCCGCACGCTCGTTTCGTGGGTTGACTTAT
125 TGCCCGCACGCTCATTTCGTGGGTTGGCTTAG
* *
31926990 GCATACGGAGTTCATTCCCA-GTCTAAGATCATACCAGACCAAGGGTTGTGGCAGCAGGATCGGC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCA-ACC-GACCGAGGGTTGTGGTAGCAGGATCGGC
* * * * * * *
31927054 AGCACGTAGGGGGGACCGGG-TCGATCCCCGGCTTGCACGTTTTGCTTCTCCGGTCGGTCGAGCG
63 AGCACGCAGGGGGGACCGGGCT-GATCCCCGGCTTGCGCATTATGCCTCTCTGGTCGGTCGAGTG
31927118 CCCGCACGCTCATTTCGTGGGTTGGCTTAG
127 CCCGCACGCTCATTTCGTGGGTTGGCTTAG
*
31927148 GCATGCGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
31927175 CATACGGAGC
Statistics
Matches: 280, Mismatches: 48, Indels: 32
0.78 0.13 0.09
Matches are distributed among these distances:
157 11 0.04
158 144 0.51
159 119 0.43
160 5 0.02
161 1 0.00
ACGTcount: A:0.17, C:0.26, G:0.32, T:0.25
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAACCGACCGAGGGTTGTGGTAGCAGGATCGGCAGC
ACGCAGGGGGGACCGGGCTGATCCCCGGCTTGCGCATTATGCCTCTCTGGTCGGTCGAGTGCCCG
CACGCTCATTTCGTGGGTTGGCTTAG
Done.