Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 348 of 402
Found at i:31927918 original size:26 final size:26
Alignment explanation
Indices: 31927881--31927959 Score: 97
Period size: 26 Copynumber: 3.0 Consensus size: 26
31927871 GTTGACTTAG
*
31927881 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
** *
31927907 GCATACGAAGTTCATCCGTAATCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
31927933 GCATAC-AGAGTTCATTCCCAGTCTAA
1 GCATACGA-AGTTCATCCCCAGTCTAA
31927959 G
1 G
31927960 ATCAGATCGG
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
25 1 0.02
26 43 0.98
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:31928395 original size:158 final size:156
Alignment explanation
Indices: 31927933--31928430 Score: 524
Period size: 158 Copynumber: 3.2 Consensus size: 156
31927923 CGTAATCTAA
* * * *
31927933 GCATACAGAGTTCATTCCCA-GTCTAAGATCAGATCGGAGA-GAGGGTTGCGACAGCAGGATCAA
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGA-CCGA-ACGAGGGTTGCGACAGCAGGACCGA
* * * * **
31927996 CAGCACGCAGGGGGGACCGGACCGATCCCCGGCTT-GTACATTCTGCCTCTCCGGTCGATTGAGT
63 CAGCACGCAGGGGGGATCGGGCCGATCCTCGGCTTCG--CATTCTGCCTCTCCGGCCGGCTGAGT
* *
31928060 GCCCGCACGCCCGTTCCATGGGTTGGCTTAG
126 GCCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * ** * * * * *
31928091 GCATAGGGAGTACATTCCATGTCTAAGCCCCAGTCGGATCGAGGGTTGTGGC-GC--GACCGACA
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGACCGAACGAGGGTTGCGACAGCAGGACCGACA
* * * *
31928153 GCACGCAGAGGGGGATCGGGCCAATCCTCGGCTTCGCATTATGCCTCTCTGGCCGGCTCAGTGCC
65 GCACGCAG-GGGGGATCGGGCCGATCCTCGGCTTCGCATTCTGCCTCTCCGGCCGGCTGAGTGCC
* *
31928218 CGCACTCTCGTTTCATGGGTTGACTTAG
129 CGCACGCTCGTTTCATGGGTTGGCTTAG
** *
31928246 GCATACGGAGTTCATTCCCA-GTCTAAGATTGGACCAAACTGAGGGTTGCGACAGCAGGACCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCGAAC-GAGGGTTGCGACAGCAGGACCGAC
* * * *
31928310 AGCACGTAGGGGGGATCGGGTCGATCCTCGGCTTACGCATTCTGCCTCTCCGGGCGGCTGACTGC
64 AGCACGCAGGGGGGATCGGGCCGATCCTCGGCTT-CGCATTCTGCCTCTCCGGCCGGCTGAGTGC
* * *
31928375 CTGCACGCTCGTTTCGTGGGTTGGCTTTG
128 CCGCACGCTCGTTTCATGGGTTGGCTTAG
31928404 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
31928431 CATATGGAGT
Statistics
Matches: 278, Mismatches: 50, Indels: 24
0.79 0.14 0.07
Matches are distributed among these distances:
154 4 0.01
155 92 0.33
156 26 0.09
157 32 0.12
158 121 0.44
159 3 0.01
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.22
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACCGAACGAGGGTTGCGACAGCAGGACCGACAG
CACGCAGGGGGGATCGGGCCGATCCTCGGCTTCGCATTCTGCCTCTCCGGCCGGCTGAGTGCCCG
CACGCTCGTTTCATGGGTTGGCTTAG
Found at i:31928440 original size:26 final size:26
Alignment explanation
Indices: 31928404--31928456 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31928394 GTTGGCTTTG
31928404 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
31928430 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
31928456 G
1 G
31928457 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:31929160 original size:26 final size:26
Alignment explanation
Indices: 31929123--31929175 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31929113 TTGAGGTTAG
31929123 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
*
31929149 GCATA-GGAAGTTCATTCCCAGTCTAA
1 GCATATGG-AGTTCATCCCCAGTCTAA
31929175 G
1 G
31929176 ATTGAACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 2 0.08
26 23 0.92
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATATGGAGTTCATCCCCAGTCTAA
Found at i:31937577 original size:158 final size:156
Alignment explanation
Indices: 31936919--31937580 Score: 499
Period size: 158 Copynumber: 4.2 Consensus size: 156
31936909 CCCAATCTAA
** * * * * * *
31936919 GCATACGGAGTTCATTCC-TAGTCTAAG-ATCAGTCCGGACCGAGGGTTACGGCAGTAGGATTGG
1 GCATACGGAGTTCATTCCAT-GTCTAAGCCCCAG-CTGGACCGAGGGTTGCGACAGCAGGATCGA
* * *
31936982 CAGCACACAG-GAGGGACCGGGCCGATCCCAAGCTTGCACATTCTGCCTCTCCGTCTGGCTGAGC
64 CAGCACGCAGAG-GGGACCGGGCCGATCCC-AGCTTGCGCATTCTGCCTCTCCG-CCGGCTGAGC
* * * *
31937046 ACCCGTACACTCGTTTCCTGGGTTGGCTTAG
126 GCCCGCACACTCATTTCGTGGGTTGGCTTAG
* * * * *
31937077 GCATAAGGAGGTT-ATTCCATGTCTAAGCCCCAGCTGGACTGAGGGTTGTG-TA--TGGATCGAC
1 GCATACGGA-GTTCATTCCATGTCTAAGCCCCAGCTGGACCGAGGGTTGCGACAGCAGGATCGAC
* * * *
31937138 AGGCACGCA-AGGGGACCGGGGTCGATCCC-CCTTGCGCATTCTACCGAAGTTTGCCTCTCGCTG
65 A-GCACGCAGAGGGGACC-GGGCCGATCCCAGCTTGCGCATTCTGCC------T--CTC-CGCCG
* * *
31937201 GCTGAGCGCCCGCACACCCATTTCGTTGGTTTGCTTA-
119 GCTGAGCGCCCGCACACTCATTTCGTGGGTTGGCTTAG
* * * * * * *
31937238 GC-TA-GGAGTTCATTTCATGGCTAAGCCCCAGCTGGACCAAGGGTTGTGGCAGCGGGA-CCAGC
1 GCATACGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACCGAGGGTTGCGACAGCAGGATCGA-C
* * * * * * *
31937300 AGCACGCAGAGGGGGATCGGGCCGATCCCCAACTTGCGAATTATGCCTCTTCGGTCGGCTTAGCG
65 AGCACGCAGA-GGGGACCGGGCCGAT-CCCAGCTTGCGCATTCTGCCTC-TCCGCCGGCTGAGCG
* * * *
31937365 CCCGCACGCTCATTTCATGGGTTGACTTAT
127 CCCGCACACTCATTTCGTGGGTTGGCTTAG
* * * ** * * *
31937395 GCGTACAGAGTTCATTTCGA-GTCTAAG-ATCGGACTAGACCGAGGGTTGCGACAGCAAGATCGA
1 GCATACGGAGTTCA-TTCCATGTCTAAGCCCCAG-CTGGACCGAGGGTTGCGACAGCAGGATCGA
31937458 CAGCACGCAGAGGGGACCGGGCCGATCCCTAGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCG
64 CAGCACGCAGAGGGGACCGGGCCGATCCC-AGCTTGCGCATTCTGCCTCTCCG-CCGGCTGAGCG
* *
31937523 CCCGCACGCTCATTTCGTAGGTTGGCTTAG
127 CCCGCACACTCATTTCGTGGGTTGGCTTAG
31937553 GCATACGGAGTTCATTCCATGTCTAAGC
1 GCATACGGAGTTCATTCCATGTCTAAGC
31937581 ATACGGAGTT
Statistics
Matches: 395, Mismatches: 74, Indels: 69
0.73 0.14 0.13
Matches are distributed among these distances:
154 13 0.03
155 13 0.03
156 50 0.13
157 15 0.04
158 125 0.32
159 87 0.22
160 9 0.02
161 11 0.03
162 49 0.12
163 11 0.03
164 12 0.03
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.23
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACCGAGGGTTGCGACAGCAGGATCGACA
GCACGCAGAGGGGACCGGGCCGATCCCAGCTTGCGCATTCTGCCTCTCCGCCGGCTGAGCGCCCG
CACACTCATTTCGTGGGTTGGCTTAG
Found at i:31937603 original size:26 final size:26
Alignment explanation
Indices: 31937553--31937605 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31937543 GTTGGCTTAG
*
31937553 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
31937579 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
31937605 G
1 G
31937606 ATTTTAAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:31938019 original size:11 final size:13
Alignment explanation
Indices: 31937994--31938025 Score: 50
Period size: 11 Copynumber: 2.6 Consensus size: 13
31937984 ATTTGGGGAC
31937994 AAAAATCTTTCTA
1 AAAAATCTTTCTA
31938007 AAAAAT-TTT-TA
1 AAAAATCTTTCTA
31938018 AAAAATCT
1 AAAAATCT
31938026 CGAACCGTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 8 0.44
12 4 0.22
13 6 0.33
ACGTcount: A:0.53, C:0.09, G:0.00, T:0.38
Consensus pattern (13 bp):
AAAAATCTTTCTA
Found at i:31938301 original size:26 final size:26
Alignment explanation
Indices: 31938264--31938316 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
31938254 GTTGACTTTG
31938264 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
31938290 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
31938316 G
1 G
31938317 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:31938599 original size:159 final size:158
Alignment explanation
Indices: 31938290--31938721 Score: 384
Period size: 159 Copynumber: 2.7 Consensus size: 158
31938280 CCCAGTCTAA
* * * * * * * * * *
31938290 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACAGAGGGTTGCGGTAGTAGGATCGACA
1 GCATAGGGAGTTCATTCCCAATCCAAGACCAGACCAGACCGAGGGTTGTGGCAGCAGGACCGACA
* * * * ** * * * * **
31938355 GCATGCAAGG-GGGACCAGGCCTATCCCCGGCTTGAACATTCTGCCTCTCC-GATCGGCTGAGCG
66 GCACGC-AGGAGGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCAG-CCGGGTCAATG
* * * * **
31938418 TTCGCAGGCCCGTTTCGTGGGTTGGCTTAG
129 TCCGCACGCTCGTTTCATGGGTTAACTTAG
* * * * * *
31938448 GCATAGGGAGTTCATTCCTAGTCCAAGCCCCA-ACCGGACCGAGGGTTGTTGCAGCGGGACCGAC
1 GCATAGGGAGTTCATTCCCAATCCAAG-ACCAGACCAGACCGAGGGTTGTGGCAGCAGGACCGAC
* * ** *
31938512 AGCACGCAGAGGGGGATTGGGTTGATCCCCGGCTTGTGCATTATGCCTCTCCAGCCGGGTCAATG
65 AGCACGCAG-GAGGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCAGCCGGGTCAATG
31938577 TCCGCACGCTCGTTTCATGGGTTAACTTAG
129 TCCGCACGCTCGTTTCATGGGTTAACTTAG
* * * * * *
31938607 GCATATGGAGTTCATTCCCAATCTAAGATCAGACCAGACTGAGGGTTGTGGTAGCAGGATCGACA
1 GCATAGGGAGTTCATTCCCAATCCAAGACCAGACCAGACCGAGGGTTGTGGCAGCAGGACCGACA
* *
31938672 GCACGCAGGAGGGATCGGGCCGGTCCCCGGCTTGCGCATTCTGCCTCTCC
66 GCACGCAGGAGGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCC
31938722 GATCGGCTGA
Statistics
Matches: 217, Mismatches: 52, Indels: 10
0.78 0.19 0.04
Matches are distributed among these distances:
157 2 0.01
158 93 0.43
159 121 0.56
160 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.31, T:0.22
Consensus pattern (158 bp):
GCATAGGGAGTTCATTCCCAATCCAAGACCAGACCAGACCGAGGGTTGTGGCAGCAGGACCGACA
GCACGCAGGAGGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCAGCCGGGTCAATGTC
CGCACGCTCGTTTCATGGGTTAACTTAG
Found at i:31938775 original size:158 final size:157
Alignment explanation
Indices: 31938290--31938791 Score: 506
Period size: 158 Copynumber: 3.2 Consensus size: 157
31938280 CCCAGTCTAA
* *
31938290 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACAGAGGGTTGCGGTAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACAGAGGGTTGTGGTAGCAGGATCGACA
* * * * * *
31938355 GCATGCAAGGGGGACCAGGCCTATCCCCGGCTTGAACATTCTGCCTCTCCGATCGGCTGAGCGTT
66 GCACGC-AGGGGGATCGGGCCGATCCCCGGCTTGAGCATTCTGCCTCTCCGATCGGCTGAGCGTC
* *
31938420 CGCAGGCCCGTTTCGTGGGTTGGCTTAG
130 CGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * ** * * * * *
31938448 GCATAGGGAGTTCATTCCTAGTCCAAGCCCCA-ACCGGACCGAGGGTTGTTGCAGCGGGACCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAG-ATCAGACCGGACAGAGGGTTGTGGTAGCAGGATCGAC
* ** * * * * * **
31938512 AGCACGCAGAGGGGGATTGGGTTGATCCCCGGCTTGTGCATTATGCCTCTCC-AGCCGGGTCAAT
65 AGCACGC--AGGGGGATCGGGCCGATCCCCGGCTTGAGCATTCTGCCTCTCCGA-TCGGCTGAGC
* **
31938576 GTCCGCACGCTCGTTTCATGGGTTAACTTAG
127 GTCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * *
31938607 GCATATGGAGTTCATTCCCAATCTAAGATCAGACCAGACTGAGGGTTGTGGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACAGAGGGTTGTGGTAGCAGGATCGACA
* * **
31938672 GCACGCAGGAGGGATCGGGCCGGTCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCACC
66 GCACGCAGG-GGGATCGGGCCGATCCCCGGCTTGAGCATTCTGCCTCTCCGATCGGCTGAGCGTC
* * * *
31938737 CGTACGCTCATTTTGTGGGTTGGCTTTG
130 CGCACGCTCGTTTCGTGGGTTGGCTTAG
*
31938765 TCATACGGAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
31938792 CATACGGAGT
Statistics
Matches: 268, Mismatches: 69, Indels: 14
0.76 0.20 0.04
Matches are distributed among these distances:
157 6 0.02
158 139 0.52
159 123 0.46
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACAGAGGGTTGTGGTAGCAGGATCGACA
GCACGCAGGGGGATCGGGCCGATCCCCGGCTTGAGCATTCTGCCTCTCCGATCGGCTGAGCGTCC
GCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:31938795 original size:26 final size:26
Alignment explanation
Indices: 31938766--31938844 Score: 124
Period size: 26 Copynumber: 3.0 Consensus size: 26
31938756 TTGGCTTTGT
31938766 CATACGGAGTTCATTCCATGTCTAAG
1 CATACGGAGTTCATTCCATGTCTAAG
*
31938792 CATACGGAGTTCATTCCCA-GTCTAGG
1 CATACGGAGTTCATT-CCATGTCTAAG
*
31938818 CATAGGGAGTTCATTCCATGTCTAAG
1 CATACGGAGTTCATTCCATGTCTAAG
31938844 C
1 C
31938845 CCCAGCCAGA
Statistics
Matches: 48, Mismatches: 3, Indels: 4
0.87 0.05 0.07
Matches are distributed among these distances:
25 3 0.06
26 42 0.88
27 3 0.06
ACGTcount: A:0.25, C:0.24, G:0.22, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCATGTCTAAG
Found at i:31938990 original size:210 final size:210
Alignment explanation
Indices: 31938604--31939001 Score: 500
Period size: 211 Copynumber: 1.9 Consensus size: 210
31938594 TGGGTTAACT
* * * *
31938604 TAGGCATATGGAGTTCATTCCCAATCTAAGATCAGACCAGACTGAGGGTTGTGGTAGCAGGATCG
1 TAGGCATAGGGAGTTCATTCCCAATCTAAGACCAGACCAGACCGAGGGTTGTGGCAGCAGGATCG
* * * *
31938669 ACAGCACGCAGGAGGGATCGGGCCGGTCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGC
66 ACAGCACGCAGGAGGGATCGGGCCGATCCCCGGCTTACGCATTATGCCTCTCCGATCGGCTCAGC
* * * * *
31938734 ACCCGTACGCTCATTTTGTGGGTTGGCTTTGTCATACGGAGTTCATT-CCATGTCTAAGCATACG
131 ACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGCATACG
31938798 GAGTTCATTCCCAGTC
195 GAGTTCATTCCCAGTC
* * **
31938814 TAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCAGACCGAGGGTTGTGGCAGTGGGAT
1 TAGGCATAGGGAGTTCATTCCCA-ATCTAAG-ACCAGACCAGACCGAGGGTTGTGGCAGCAGGAT
* * * * * *
31938877 CGACAGCA-GATAGAGGGGGATCGGGTCGATCCTCGGCTTACGCATTATGCCTCTTCGATTGGCT
64 CGACAGCACG-CAG-GAGGGATCGGGCCGATCCCCGGCTTACGCATTATGCCTCTCCGATCGGCT
*
31938941 CAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG-GTTCATTCCCAGTCTAAG
127 CAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
31939002 ATCAGATCGG
Statistics
Matches: 159, Mismatches: 24, Indels: 10
0.82 0.12 0.05
Matches are distributed among these distances:
209 4 0.03
210 71 0.45
211 84 0.53
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (210 bp):
TAGGCATAGGGAGTTCATTCCCAATCTAAGACCAGACCAGACCGAGGGTTGTGGCAGCAGGATCG
ACAGCACGCAGGAGGGATCGGGCCGATCCCCGGCTTACGCATTATGCCTCTCCGATCGGCTCAGC
ACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
AGTTCATTCCCAGTC
Found at i:31939153 original size:368 final size:369
Alignment explanation
Indices: 31938445--31939160 Score: 940
Period size: 368 Copynumber: 1.9 Consensus size: 369
31938435 TGGGTTGGCT
* *
31938445 TAGGCATAGGGAGTTCATTCCTAGTCCAAGCCCCAACCGGACCGAGGGTTGTTGCAGCGGGACCG
1 TAGGCATAGGGAGTTCATTCCTAGTCCAAGCCCCAACCAGACCGAGGGTTGTGGCAGCGGGACCG
* * ** *
31938510 ACAGCACGCAGAGGGGGATTGGGTTGATCCCCGGCTTGTGCATTATGCCTCTCCAGCCGGGTCAA
66 ACAGCACGCAGAGGGGGATCGGGTCGATCCCCGGCTTACGCATTATGCCTCTCCAGCCGGCTCAA
*** *
31938575 TGTCCGCACGCTCGTTTCATGGGTTAACTTAGGCATATGGAGTTCATTCCCAATCTAAGATCAGA
131 CACCCGCACGCTCGTTTCATGGGTTAACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGA
* * * * * *
31938640 CCAGACTGAGGGTTGTGGTAGCAGGATCGACAGCACGCAGGAGGGATCGGGCCGGTCCCCGGCTT
196 CCAGACAGACGGTTGAGGTAGCAGGATCGACAGCACGCAGGAGGGATCAGGCCAGTCCCCGACTT
* * * * *
31938705 GCGCATTCTGCCTCTCCGATCGGCTGAGCACCCGTACGCTCATTTTGTGGGTTGGCTTTGTCATA
261 GCGCATTCTACCTCTCCGACCGGCTGAGCACCCGCACGCTCATTTCGTGGGTTGGCTTGGTCATA
* *
31938770 CGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTC
326 CAGACTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTC
* * * *
31938814 TAGGCATAGGGAGTTCATTCC-ATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGTGGGATC
1 TAGGCATAGGGAGTTCATTCCTA-GTCCAAGCCCCAACCAGACCGAGGGTTGTGGCAGCGGGACC
* * * **
31938878 GACAGCA-GATAGAGGGGGATCGGGTCGATCCTCGGCTTACGCATTATGCCTCTTC-GATTGGCT
65 GACAGCACG-CAGAGGGGGATCGGGTCGATCCCCGGCTTACGCATTATGCCTCTCCAG-CCGGCT
* * * *
31938941 CAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG-GTTCATTCCCAGTCTAAGATC
128 CAACACCCGCACGCTCGTTTCATGGGTTAACTTAGGCATACGGAGTTCATTCCCAATCTAAGATC
* * * *
31939005 AGATCGGACAGACGGTTGAGGTAGCAGGATCGACAGCACGCAGG-GGGAATCAGGCTAGTCCCTG
193 AGACCAGACAGACGGTTGAGGTAGCAGGATCGACAGCACGCAGGAGGG-ATCAGGCCAGTCCCCG
* * * *
31939069 ACTTGCGCATTCTACCTCTCCTACCGGCTGAGCGCCTGCACGCTCGTTTCGTGGGTTGGCTTAGG
257 ACTTGCGCATTCTACCTCTCCGACCGGCTGAGCACCCGCACGCTCATTTCGTGGGTTGGCTT-GG
31939134 T-ATACAGACTTCATTCCATGTCTAAGC
321 TCATACAGACTTCATTCCATGTCTAAGC
31939161 CCAGTCGGAC
Statistics
Matches: 297, Mismatches: 45, Indels: 11
0.84 0.13 0.03
Matches are distributed among these distances:
367 3 0.01
368 151 0.51
369 143 0.48
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (369 bp):
TAGGCATAGGGAGTTCATTCCTAGTCCAAGCCCCAACCAGACCGAGGGTTGTGGCAGCGGGACCG
ACAGCACGCAGAGGGGGATCGGGTCGATCCCCGGCTTACGCATTATGCCTCTCCAGCCGGCTCAA
CACCCGCACGCTCGTTTCATGGGTTAACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGA
CCAGACAGACGGTTGAGGTAGCAGGATCGACAGCACGCAGGAGGGATCAGGCCAGTCCCCGACTT
GCGCATTCTACCTCTCCGACCGGCTGAGCACCCGCACGCTCATTTCGTGGGTTGGCTTGGTCATA
CAGACTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTC
Found at i:31939197 original size:157 final size:157
Alignment explanation
Indices: 31938827--31939198 Score: 369
Period size: 157 Copynumber: 2.4 Consensus size: 157
31938817 GCATAGGGAG
* * * *
31938827 TTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGTGGGATCGACAGCAGATAGAG
1 TTCATTCCATGTCTAAG-CCCAGTCGGACCGAGGGTTGTGGCAGTAGGATCGACAGCAGACAGAG
* * * * * * **
31938892 GGGGATCGGGTCGATCCTCGGCTTACGCATTATGCCTCTTCGATTGGCTCAGCACCCGCACGCTC
65 GGGAATCGGCTAGATCCTCGACTTACGCATTATACCTCTCCGACCGGCTCAGCACCCGCACGCTC
**
31938957 GTTTCGTGGGTTGACTTAGGCATACGGG
130 GTTTCGTGGGTTGACTTAGGCATACGAC
** * * * * *
31938985 TTCATTCCCA-GTCTAAGATCAGATCGGACAGACGGTTGAGGTAGCAGGATCGACAGCACG-CAG
1 TTCATT-CCATGTCTAAGCCCAG-TCGGACCGAGGGTTGTGGCAGTAGGATCGACAGCA-GACAG
* * * * * *
31939048 -GGGGAATCAGGCTAG-TCC-CTGACTTGCGCATTCTACCTCTCCTACCGGCTGAGCGCCTGCAC
63 AGGGGAATC-GGCTAGATCCTC-GACTTACGCATTATACCTCTCCGACCGGCTCAGCACCCGCAC
* *
31939110 GCTCGTTTCGTGGGTTGGCTTAGGTATACAGAC
126 GCTCGTTTCGTGGGTTGACTTAGGCATAC-GAC
31939143 TTCATTCCATGTCTAAGCCCAGTCGGACCGAGGGTTGTGGCAGTAGGA-CTGACAGC
1 TTCATTCCATGTCTAAGCCCAGTCGGACCGAGGGTTGTGGCAGTAGGATC-GACAGC
31939199 GAGATTTGCA
Statistics
Matches: 170, Mismatches: 36, Indels: 17
0.76 0.16 0.08
Matches are distributed among these distances:
156 2 0.01
157 101 0.59
158 63 0.37
159 4 0.02
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (157 bp):
TTCATTCCATGTCTAAGCCCAGTCGGACCGAGGGTTGTGGCAGTAGGATCGACAGCAGACAGAGG
GGAATCGGCTAGATCCTCGACTTACGCATTATACCTCTCCGACCGGCTCAGCACCCGCACGCTCG
TTTCGTGGGTTGACTTAGGCATACGAC
Found at i:31939348 original size:26 final size:26
Alignment explanation
Indices: 31939318--31939369 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
31939308 TGACTTAGGC
* * *
31939318 ATACGGAGTTCATCCCCAGTCTAAGA
1 ATACGGAGCTAATCCCCAATCTAAGA
*
31939344 ATACGGAGCTAATTCCCAATCTAAGA
1 ATACGGAGCTAATCCCCAATCTAAGA
31939370 TCAGACTAGA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.35, C:0.25, G:0.17, T:0.23
Consensus pattern (26 bp):
ATACGGAGCTAATCCCCAATCTAAGA
Found at i:31940222 original size:502 final size:502
Alignment explanation
Indices: 31939272--31940350 Score: 1172
Period size: 502 Copynumber: 2.1 Consensus size: 502
31939262 TCGGCCTTTT
* *
31939272 CGACCGGCTGAGCGCCCGTAAGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCA-
1 CGACCGGCTGAGCGCCCGTAAGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT-TCCAT
* *
31939336 GTCTAAGAATACGGAGCTAATTCCCAATCTAAGATCAGACTAGACCGAAGGTTGCGACAGCAGGA
65 GTCTAAGCATAAGGAGCTAATTCCCAATCTAAGATCAGACTAGACCGAAGGTTGCGACAGCAGGA
*** * * * * * * * *
31939401 TCAGCAGCATGTAGGGGGGACCGGGTCGATCCCTAGCTTGTGCATTCTGCCTCTCTGGTTGGCTG
130 TCAGCAGCACACAGAGGGGACCGGGTCGAACCCCAGCTAGCGCATTCTGCCTCTCCGGTCGACTG
* **
31939466 TGCACCCACACACCTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCC
195 AGCACCCACACACCTGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCC
* * * * ** * * *
31939531 AGCCGGACTGACGGTTGTGGCAGTGGGACTAACAGCACGCAGAGGGGGATCGGGCTGATCCTCGG
260 AGCCGAACCGACGGTTGTGGCAGGGGGACTAACAGAAAACAGAGAGGGATCGGGCCGATCCTCAG
* * * * * *
31939596 CTTGTGCGTTATTCCTCTACGATCGGTTCAATGCCCGAACACTCGTTTCATGGGTTGACTTAGGC
325 CTTGTGCATTATGCCTCTACGACCAGCTCAATGCCCAAACACTCGTTTCATGGGTTGACTTAGGC
* * ** * * * **
31939661 ATACGGAGTTCTTTCCCAGTCTAAGATTTGACCGTATCGGGGGTTGTGATAGCAGGATCGACAGC
390 ATACGGAGTTCATTCCCAATCTAAGATCAGACAGTACCGAGGGTTACGATAGCAGGATCGACAGC
** ** * *
31939726 ATGCAGGG-GGGACCGATTC-GATCCCCGGTTTGCGCATTCTGCCTCTC
455 ACACAGGGTGGGACCGAACCTG-TCCCCGGCTTGCGCATTCTACCTCTC
* * * * * * *
31939773 CGGCTGGCTGAGCACCCGCATGCTCGTTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCATG
1 CGACCGGCTGAGCGCCCGTAAGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATG
* * * * * *
31939838 TCTAAGCATAAGGAGCTTATTCCCAGTCTTAAGGTTAGA-TCAGACC-AAGGGTTGCGATAGTAG
66 TCTAAGCATAAGGAGCTAATTCCCAATC-TAAGATCAGACT-AGACCGAA-GGTTGCGACAGCAG
* * * * *
31939901 GAT-TGACAGCACACAGAGGGGATCGGGTTGAACCCCGGCTAGCGCATTCTGCCTTTCCGGTCGA
128 GATCAG-CAGCACACAGAGGGGACCGGGTCGAACCCCAGCTAGCGCATTCTGCCTCTCCGGTCGA
** * *
31939965 CTGAGTGCCCACAC-GCTCGTTTCGTTGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAG
192 CTGAGCACCCACACACCT-GTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAG
* ** *
31940029 CCCCAGCCGAACCGAGGGTTGTGGCAGCGGGGA-TCGCAGAAAATAGAGAGGGA-CTGGGCCGAT
256 CCCCAGCCGAACCGACGGTTGTGGCAG-GGGGACTAACAGAAAACAGAGAGGGATC-GGGCCGAT
* * * * * *
31940092 CC-CTAGCTTGTGCATTATGCCTCTCCGGCCAGCTCAGTGCCCAAACGCTCGTTTCGTGGGTTGG
319 CCTC-AGCTTGTGCATTATGCCTCTACGACCAGCTCAATGCCCAAACACTCGTTTCATGGGTTGA
* * *
31940156 CTTAGGCATACGGAGTTCATTCCCAATCTTAGATCAGATCAG-ACCGAGGGTTACGGTAGTAGGA
383 CTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGA-CAGTACCGAGGGTTACGATAGCAGGA
* *
31940220 TCGACAGCACACAGGGTGGGATCGAACCTGTCCTCGGCTTGCGCATTCTACCTCTC
447 TCGACAGCACACAGGGTGGGACCGAACCTGTCCCCGGCTTGCGCATTCTACCTCTC
* * * * *
31940276 CGACCGACTGAGCGCCCGTACGCTCGTTTTATGGGTTGGCTTAGGCATACAGAGTTCATTCCATG
1 CGACCGGCTGAGCGCCCGTAAGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATG
31940341 TCTAAGCATA
66 TCTAAGCATA
31940351 CGAAGTTCAT
Statistics
Matches: 470, Mismatches: 96, Indels: 22
0.80 0.16 0.04
Matches are distributed among these distances:
500 3 0.01
501 84 0.18
502 281 0.60
503 101 0.21
504 1 0.00
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.25
Consensus pattern (502 bp):
CGACCGGCTGAGCGCCCGTAAGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATG
TCTAAGCATAAGGAGCTAATTCCCAATCTAAGATCAGACTAGACCGAAGGTTGCGACAGCAGGAT
CAGCAGCACACAGAGGGGACCGGGTCGAACCCCAGCTAGCGCATTCTGCCTCTCCGGTCGACTGA
GCACCCACACACCTGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCA
GCCGAACCGACGGTTGTGGCAGGGGGACTAACAGAAAACAGAGAGGGATCGGGCCGATCCTCAGC
TTGTGCATTATGCCTCTACGACCAGCTCAATGCCCAAACACTCGTTTCATGGGTTGACTTAGGCA
TACGGAGTTCATTCCCAATCTAAGATCAGACAGTACCGAGGGTTACGATAGCAGGATCGACAGCA
CACAGGGTGGGACCGAACCTGTCCCCGGCTTGCGCATTCTACCTCTC
Found at i:31940357 original size:26 final size:26
Alignment explanation
Indices: 31940320--31940372 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
31940310 GTTGGCTTAG
31940320 GCATACAGAGTTCATTCC-ATGTCTAA
1 GCATACAGAGTTCATTCCTA-GTCTAA
31940346 GCATAC-GAAGTTCATTCCTAGTCTAA
1 GCATACAG-AGTTCATTCCTAGTCTAA
31940372 G
1 G
31940373 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 1 0.04
26 23 0.92
27 1 0.04
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:31940894 original size:159 final size:157
Alignment explanation
Indices: 31940492--31940901 Score: 392
Period size: 159 Copynumber: 2.6 Consensus size: 157
31940482 GAGCACCCGC
* * * *
31940492 ACACTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGATCGGACC
1 ACACTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCAGTCTAAGATCAGATCCGACC
* * ** ** ** *
31940557 GAGGGTTGTGGCAGTAGGATCAACAGCACGTAGGGGGGACCTGACCGGTCCCCGGCTTACGCATT
65 GAGGGTTGTGGTAGTAGGACCGGCAGCACACAGGGGGGACAGGACCGATCCCCGGCTTACGCATT
* * * * * * *
31940622 CTGCCTTTCTGATTGGCTGAGTGCCCAT
130 ATGCCTCTCTGACTGACTCAGCGCCCAA
** * * * ** *
31940650 ACGTTAATTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCA-AGCCGAAC
1 ACACTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCA-GTCTAAGATCAGATCCG-AC
* * * * * * *
31940714 CTAGTGTTGTGGTAGTGGGACCGGCAGCACACAGAGGGGGATAGGGCCGATCCCTGGCTTGCGCA
64 CGAGGGTTGTGGTAGTAGGACCGGCAGCACACAG-GGGGGACAGGACCGATCCCCGGCTTACGCA
31940779 TTATGCCTCTCT-AGCTGACTCAGCGCCCAA
128 TTATGCCTCTCTGA-CTGACTCAGCGCCCAA
* *
31940809 ACACTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCGTTCCTAGTCTAAGATCGGATCCGACC
1 ACACTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC-AGTCTAAGATCAGATCCGACC
* * *
31940874 GAGGGTTGCGATAGCAGGACCGGCAGCA
65 GAGGGTTGTGGTAGTAGGACCGGCAGCA
31940902 GGACCAACAG
Statistics
Matches: 195, Mismatches: 51, Indels: 11
0.76 0.20 0.04
Matches are distributed among these distances:
157 6 0.03
158 70 0.36
159 114 0.58
160 5 0.03
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.25
Consensus pattern (157 bp):
ACACTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCAGTCTAAGATCAGATCCGACCG
AGGGTTGTGGTAGTAGGACCGGCAGCACACAGGGGGGACAGGACCGATCCCCGGCTTACGCATTA
TGCCTCTCTGACTGACTCAGCGCCCAA
Found at i:31941309 original size:341 final size:340
Alignment explanation
Indices: 31940661--31941384 Score: 843
Period size: 341 Copynumber: 2.1 Consensus size: 340
31940651 CGTTAATTTT
* * *
31940661 GTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAAGCCGAACCTAGTGTTGTGG
1 GTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCAAGCCGAACCTAGTGCTATGG
** * * * *
31940726 TAGTGGGACCGGCAGCACACAGAGGGGGATAGGGCCGATCCCTGGCTTGCGCATTATGCCTCTCT
66 TAGCAGGACCGACAGCACACAGAGGGGGATAGGGCCAATCCCTGGCTTACGCATTATGACTCTCT
* *
31940791 AGCTGACTCAGCGCCCAAACACTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCGTTCCTAGT
131 AGCAGACTCAGCGCCCAAACACTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGT
* * *
31940856 CTAAGATCGGATCCGACCGAGGGTTGCGATAGCAGGACCGGCAGCAGGACCAACAGCAAGATCGA
196 CTAAGATCGGATCCGACCGAGGGTTACGATAGCAGGACCAGCAGCAGGACCAACAGCAAGAGCGA
** * * * * *
31940921 CAGCACGCAGGGGGGACCGAGTCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCG
261 CAGCACGCAGGGCCGACCCAGTCGAGCCTCGGCTTGCG-AGTCTGCCTCCCCGGCCGACTAAGCG
31940986 CCCACACGCCCGTTTC
325 CCCACACGCCCGTTTC
* * *
31941002 GTGGATTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCAAGCCGGA-CTGAGTGCTATG
1 GTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCAAGCCGAACCT-AGTGCTATG
* *
31941066 GTAGCAGGATCGACAGCACACAGAGGGGGATAGGGCCAATTCCTGGCTTACGCATTATGACTCTC
65 GTAGCAGGACCGACAGCACACAGAGGGGGATAGGGCCAATCCCTGGCTTACGCATTATGACTCTC
* **
31941131 TAGCCAG-CTCAGCGCCCAAAC-GTTTTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTA
130 TAG-CAGACTCAGCGCCCAAACACTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTA
* * * * * *
31941194 GTCTAAGATTGGATCGGACCGAGGGTTACGATAGCAGGACCAGTAGTAGGATCAACAGCACGTAG
194 GTCTAAGATCGGATCCGACCGAGGGTTACGATAGCAGGACCAGCAGCAGGACCAACAGCAAG-AG
* ** * * * * * *
31941259 GGGGAG-A-TC-GGGCCGATCCCCAGCTTGCGCCTTCTGCTCTTCG-GTCTGCCTCCCCGGTCGA
258 CGACAGCACGCAGGGCCGA--CCCAG-TCGAGCC-TCGGCT-TGCGAGTCTGCCTCCCCGGCCGA
* ** *
31941320 CTAAGTGCCTGCACGCTCGTTTC
318 CTAAGCGCCCACACGCCCGTTTC
* * *
31941343 ATGGGTTGACTTAGGCATAAGGAGTTCATCCCCA-GTCTAAGC
1 GTGGGTTGGCTTAGGCATAAGGAGTTCAT-TCCATGTCTAAGC
31941385 ATTTGGAGTT
Statistics
Matches: 322, Mismatches: 52, Indels: 18
0.82 0.13 0.05
Matches are distributed among these distances:
338 5 0.02
339 1 0.00
340 99 0.31
341 204 0.63
342 10 0.03
343 3 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (340 bp):
GTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCAAGCCGAACCTAGTGCTATGG
TAGCAGGACCGACAGCACACAGAGGGGGATAGGGCCAATCCCTGGCTTACGCATTATGACTCTCT
AGCAGACTCAGCGCCCAAACACTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGT
CTAAGATCGGATCCGACCGAGGGTTACGATAGCAGGACCAGCAGCAGGACCAACAGCAAGAGCGA
CAGCACGCAGGGCCGACCCAGTCGAGCCTCGGCTTGCGAGTCTGCCTCCCCGGCCGACTAAGCGC
CCACACGCCCGTTTC
Found at i:31941548 original size:26 final size:26
Alignment explanation
Indices: 31941478--31941550 Score: 110
Period size: 26 Copynumber: 2.8 Consensus size: 26
31941468 TGATCCTCGA
*
31941478 CTTGCGCATTCTACCTCTCCGACTGG
1 CTTGCGCATTCTACCTCTTCGACTGG
**
31941504 CTTATGCATTCTACCTCTTCGACTGG
1 CTTGCGCATTCTACCTCTTCGACTGG
*
31941530 CTTGCGCATTCTGCCTCTTCG
1 CTTGCGCATTCTACCTCTTCG
31941551 GCCGGTTGAG
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 41 1.00
ACGTcount: A:0.11, C:0.36, G:0.18, T:0.36
Consensus pattern (26 bp):
CTTGCGCATTCTACCTCTTCGACTGG
Found at i:31941776 original size:159 final size:158
Alignment explanation
Indices: 31941529--31942093 Score: 497
Period size: 159 Copynumber: 3.6 Consensus size: 158
31941519 TCTTCGACTG
* ** * *
31941529 GCTTGCGCATTCTGCCTCT-TCGGCCGGTTGAGCGCCCCCACGCTCATTTCATGGGTTGGCTTAG
1 GCTTACGCATTCTGCCTCTCT-GGCCGACTGAGCGCCCGCACGCTCATTTCATAGGTTGGCTTAG
* *
31941593 GCATACGGAGTTCATTCCCAGTCTAACATCAGACCGGAACGAGGGTTGCGGTAGCAGGATCGATA
65 GCATACAGAGTTCATTCCCAGTCTAACATCAGACCGGAACGAGGGTTGCGGCAGCAGGATCGATA
*
31941658 GCACGCAGGGAGGGACCGAGTCGGTCCCCT
130 GCACGCAGGG-GGGACCGAGCCGGTCCCCT
* * * * *
31941688 GCTTACGCATTCTACCTCTCTGGCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGG
1 GCTTACGCATTCTGCCTCTCTGGCCGACTGAGCGCCCGCACGCTCATTTCATAGGTTGGCTTAGG
** * * *
31941753 CATACAGAGTTCATT-CCATGTCTAAGCCCCA-ACC-GAACCGAGGGTTGTGGCAGCGGGA-CCA
66 CATACAGAGTTCATTCCCA-GTCTAA-CATCAGACCGGAA-CGAGGGTTGCGGCAGCAGGATCGA
* * * *
31941814 CAGCATGCAGAGGGGGACTG-GGCGGAT-CCCT
128 TAGCACGCAG-GGGGGACCGAGCCGG-TCCCCT
* * * * * ** * *
31941845 AGCTTGCGCATTATGCCTCTCCGGCC-AGCTCAGTGCCCAAACGCTCATTTCGTAGGTTGACTTA
1 -GCTTACGCATTCTGCCTCTCTGGCCGA-CTGAGCGCCCGCACGCTCATTTCATAGGTTGGCTTA
* * * * * * *
31941909 GGCATAC-GAAGTTCATTCCCAATCTTAGATCAGATCGGACCGAGGGTTGCGACAGTAGGATCGA
64 GGCATACAG-AGTTCATTCCCAGTCTAACATCAGACCGGAACGAGGGTTGCGGCAGCAGGATCGA
* * *
31941973 TAGCACGCAGGGTGGGATCGAGCCGATCCTC-
128 TAGCACGCAGGG-GGGACCGAGCCGGTCCCCT
* * * * * * *
31942004 GACTTATGCATTCTGCCTCTCTGACCGGCTGAGCGCCCGTACGCTCGTTTTATAGGTTGGTTTAG
1 G-CTTACGCATTCTGCCTCTCTGGCCGACTGAGCGCCCGCACGCTCATTTCATAGGTTGGCTTAG
31942069 GCATACA-AGTTCATT-CCATGTCTAA
65 GCATACAGAGTTCATTCCCA-GTCTAA
31942094 GCATACGGAG
Statistics
Matches: 319, Mismatches: 67, Indels: 41
0.75 0.16 0.10
Matches are distributed among these distances:
157 15 0.05
158 124 0.39
159 171 0.54
160 9 0.03
ACGTcount: A:0.20, C:0.28, G:0.28, T:0.24
Consensus pattern (158 bp):
GCTTACGCATTCTGCCTCTCTGGCCGACTGAGCGCCCGCACGCTCATTTCATAGGTTGGCTTAGG
CATACAGAGTTCATTCCCAGTCTAACATCAGACCGGAACGAGGGTTGCGGCAGCAGGATCGATAG
CACGCAGGGGGGACCGAGCCGGTCCCCT
Found at i:31942459 original size:26 final size:26
Alignment explanation
Indices: 31942423--31942475 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31942413 GTTGGCTTAG
*
31942423 GCATACGGAGTTCATTC-CATGTCTAA
1 GCATACAGAGTTCATTCTCA-GTCTAA
31942449 GCATACAGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATTCTCAGTCTAA
31942475 G
1 G
31942476 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCTCAGTCTAA
Found at i:31942583 original size:184 final size:184
Alignment explanation
Indices: 31942265--31942634 Score: 476
Period size: 184 Copynumber: 2.0 Consensus size: 184
31942255 GTTGACTTAG
* *
31942265 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCAAGGGTTGCGACAGCAGCATCGACA
1 GCATACAGAGTTCATTCCTAGTCTAAGATCAGACCGGACCAAGGGTTGCGACAGAAGCATCGACA
* * * * * * * * *
31942330 GCACGCAGGGGGGATCGGGCTGGTCCCCAATTTACGCATTTTGCCTTTTCGGTCGGTTGAGCGCC
66 GCACGCAGGGGGGATCGGGCTAGTCCCCAACTCACGCATTCTACCTCTCCGGCCGGTTGAGCACC
* *
31942395 CGCACGCTCGTTTTG-TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
131 CGCACGCTC-ATTTGATGGGTTGGCTTAGGCATACCGAGTTCATTCCATGTCTAA
* * ** *
31942449 GCATACAGAGTTCATT-CTCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGTAGAAGTATCGAC
1 GCATACAGAGTTCATTCCT-AGTCTAAGATCAGACCGGACCAAGGGTTGCGACAGAAGCATCGAC
* ** ** *
31942513 AGCACGCAGGGGGGATCGAG-TCAGTCCCCGGCTCGTGCATTCTACCTCTCCTGCCGGTTGAGCA
65 AGCACGCAGGGGGGATCGGGCT-AGTCCCCAACTCACGCATTCTACCTCTCCGGCCGGTTGAGCA
31942577 CCCGCACGCTCATTTGATGGGTTGGCTTAGGCATACCGAGTTCATTCCATGTCTAA
129 CCCGCACGCTCATTTGATGGGTTGGCTTAGGCATACCGAGTTCATTCCATGTCTAA
31942633 GC
1 GC
31942635 CCCAGCCAGA
Statistics
Matches: 159, Mismatches: 24, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
183 7 0.04
184 152 0.96
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (184 bp):
GCATACAGAGTTCATTCCTAGTCTAAGATCAGACCGGACCAAGGGTTGCGACAGAAGCATCGACA
GCACGCAGGGGGGATCGGGCTAGTCCCCAACTCACGCATTCTACCTCTCCGGCCGGTTGAGCACC
CGCACGCTCATTTGATGGGTTGGCTTAGGCATACCGAGTTCATTCCATGTCTAA
Found at i:31942745 original size:13 final size:13
Alignment explanation
Indices: 31942727--31942754 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
31942717 TGTGTATTAT
31942727 GCCTCTCCGATCG
1 GCCTCTCCGATCG
31942740 GCCTCTCCGATCG
1 GCCTCTCCGATCG
31942753 GC
1 GC
31942755 TGAACGCCCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.07, C:0.46, G:0.25, T:0.21
Consensus pattern (13 bp):
GCCTCTCCGATCG
Found at i:31942841 original size:26 final size:26
Alignment explanation
Indices: 31942791--31942843 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
31942781 GTTGACTTAG
*
31942791 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCACTCTAA
* *
31942817 GCATACGGAGTTCATTCCTACTCTAA
1 GCATACGGAGTTCATCCCCACTCTAA
31942843 G
1 G
31942844 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCACTCTAA
Found at i:31943344 original size:26 final size:26
Alignment explanation
Indices: 31943308--31943360 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
31943298 GTTGACTTAG
*
31943308 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATAAGGAGTTCATCCCCAGTCTAA
*
31943334 GCATAAGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATCCCCAGTCTAA
31943360 G
1 G
31943361 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATAAGGAGTTCATCCCCAGTCTAA
Found at i:31943878 original size:26 final size:26
Alignment explanation
Indices: 31943848--31943900 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
31943838 GTTGGCTTAG
**
31943848 GCATATGGAGTTCATTCCGTGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
31943874 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
31943900 G
1 G
31943901 ATTTTAAGCC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.32
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:31943950 original size:11 final size:11
Alignment explanation
Indices: 31943934--31943979 Score: 65
Period size: 11 Copynumber: 4.2 Consensus size: 11
31943924 TGGGCTCCGA
31943934 AGCATCACCGG
1 AGCATCACCGG
*
31943945 AGCATCATCGG
1 AGCATCACCGG
*
31943956 AGCATCATCGG
1 AGCATCACCGG
*
31943967 AGCATCGCCGG
1 AGCATCACCGG
31943978 AG
1 AG
31943980 AGCCTAACCG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 32 1.00
ACGTcount: A:0.26, C:0.30, G:0.30, T:0.13
Consensus pattern (11 bp):
AGCATCACCGG
Found at i:31945467 original size:26 final size:26
Alignment explanation
Indices: 31945437--31945489 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
31945427 GTTGACTTAG
*
31945437 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
31945463 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
31945489 G
1 G
31945490 GTTGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:31945673 original size:26 final size:26
Alignment explanation
Indices: 31945621--31945673 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
31945611 GTTGGCTTAG
* * *
31945621 GCATACGGAGTTCATTCCATTTTTAA
1 GCATAAGGAGTTCATTCCATGTCTAA
31945647 GCATAAGGAGTTCATTCCCA-GTCTAA
1 GCATAAGGAGTTCATT-CCATGTCTAA
31945673 G
1 G
31945674 AGTTTGAGCC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCATGTCTAA
Found at i:31946332 original size:905 final size:884
Alignment explanation
Indices: 31943957--31946546 Score: 3300
Period size: 880 Copynumber: 2.9 Consensus size: 884
31943947 CATCATCGGA
* * * *
31943957 GCATCATCGGAGCATCGCCGGAGAGCCTAACCGGTGGCATTGGGGGTTCCGACGATTGGGGGGGC
1 GCATCGTCGGAGCATCGCCGGAGGGCCTAACCGGTGGCATTGGGGTTTCAG-CGATTGGGGGGGC
** * * * *
31944022 TGGGGGGTGTGCGCATATGATGTGCGATGGGTGATGGTACTTCGCCCTTATGTTGGCCCCATATC
65 CAGGGGGTGT-CGCACATGATGTGCGATGGGTGCTGGTACTTAGCCCTTATATTGGCCCCATATC
* *
31944087 CCTCATCAAACGTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGTT
129 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGTC
*
31944152 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACGTTCACAAAATCTCCTCCACTT
194 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACGTTCACAAAATCTTCTCCACTT
31944217 CGATTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACCTCTACCAAATTT
259 CGATTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACCTCTACCAAATTT
*
31944282 GGGGACAAAAATCTTTCAAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCAT
324 GGGGACAAAAATCTTTCTAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCAT
* *
31944347 GAAAAATAGAAAATGGGTCGTCTTGCCACGAAACTTCACATGAA-ATCGTAGGGGACCATTGTAT
389 GAAAAATAGAAAACGGGTCGTCTTGCCACGAAACTTCACATGAAGGT-GTAGGGGACCATTGTAT
* * * *
31944411 GAATTTCCAAGCCAAAAAAATGGCATTGGCACGGTAGAAATATGAAGATGTGCTTGAACCCACCT
453 GAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCTTGAACCCACCT
*
31944476 ACCACCCGTTCGATCCCCGGCTTGCGCATCCTGCCTCTCTGGTCGACTGAGCGTCGCACGCCCGT
518 ACCACCCGTTCGATCCCCGGCTTGCGCATCCTGCCTCTCTGGTCGACTGAGCGTCGCACGCTCGT
* * * ** *
31944541 TTCGTGGATTGACTTCGGCATACCAAGTTCAT-CCCATAAAAGCATACAGGAGTTCA-T-CC-AG
583 TTCATGG-TTGACTTAGGCATACAAAGTTCATCCCCATCTAAGCATAC-GGAGTTCATTCCCAAT
** * * * *
31944602 CTAA-G-TGGACTGGACCAGGATGCGACAGCA-GAT-CAGAAT-CAGGGGGACCG-GGTCATCCT
646 CTAAGGTTGGACCAGACCAGGTTGCGACAGTAGGATCCAGAATGCAGGGGGACCGAGCTGATCCT
* ** * * * * *
31944661 GCGACTTCGCATTCTGCCTCT-CGGTG-CCGAGCACCC-TACACTCGTTCTGTGGGTT---TCAG
711 -CGGCTTCGCATTCTGCCTCTCCGCCGACTGAGCGCCCGTACGCTCTTTC-GTGGGTTGGCTTAG
*
31944720 GCATAACCGTA-TTCATTCCA-TGAAGCATACAGAGCATTCAGTCTAGAGTTTGAGCCAGTGCAC
774 GCAT-A-CGGAGTTCATTCCATTGAAGCATACAGAGCATTCAGTCTAGAGTTTGAGCCAGTGCAC
*
31944783 ATGCTAGGCTCGACATGTGCTTGCCACATTTTTTTCGCCCGGGGCACCATCAC
837 ATGCTAGGCTCGACATGTGCTTGCCACATTTTTTTCGCCCAGGG---C--CAC
* * ** *
31944836 TGGAGCATCGTCGGAGCATCACC-GAGAGGCCTAACTGGTGGCATTGGGGTTTTGGCAATTGGGG
1 ----GCATCGTCGGAGCATCGCCGGAG-GGCCTAACCGGTGGCATTGGGGTTTCAGCGATTGGGG
* *
31944900 GGGCCAGAGGTGTGT-GCACATGATGTGCTG-TGGGTGCTGGTACTTAGCTCTTATATTGGCCCC
61 GGGCCAG-GGGGTGTCGCACATGATGTGC-GATGGGTGCTGGTACTTAGCCCTTATATTGGCCCC
* * *
31944963 TTATCCCTCATCGAACCTCGAGAGCTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTG
124 ATATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTG
*
31945028 CTG-CTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTGAAACGTTCACAAAATCTTCT
189 CTGTC-AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACGTTCACAAAATCTTCT
* *
31945092 CCACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCC-AAAAAAATACAAGGATCACCTCTACC
253 CCACTTCGATTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACCTCTACC
* * **
31945156 AAATTTGGGGACAAAATTCTTTCTAAAAAAATTTAAAAAAATCCTAAACCGTAAAAAGTTTCAAA
318 AAATTTGGGGACAAAAATCTTTCTAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAA
* *
31945221 AATCATGAAAAATAGAAAACGGGTCGTCTTGCCATGAAACTTCACATGAAGGCGTAGGGGACCAT
383 AATCATGAAAAATAGAAAACGGGTCGTCTTGCCACGAAACTTCACATGAAGGTGTAGGGGACCAT
* *
31945286 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCATGAATC
448 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCTTGAACC
*
31945351 CACCTACCACCCGTTCGATCCCCGGCTTGCGCATCCTGCCTCTCTGGTCGACTGAGCGTCCGCAT
513 CACCTACCACCCGTTCGATCCCCGGCTTGCGCATCCTGCCTCTCTGGTCGACTGAGCGT-CGCAC
* **
31945416 GCTCATTTCAT-GTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTC
577 GCTCGTTTCATGGTTGACTTAGGCATACAAAGTTCATCCCCA-TCTAAGCATACGGAGTTCATTC
*
31945480 CCAATCTAAGGTTGGACCAGACCAAGTGTTGCGACAGTAGGATCGGCAGCATGCAGGGGGGACCG
641 CCAATCTAAGGTTGGACCAGACC-AG-GTTGCGACAGTAGGATC--CAGAATGCA-GGGGGACCG
* * *
31945545 AGCTGATCCTCGGCTTGTGAATTCTACCTCTCCGACCGACTGAGCGCCCGTACGCTCATTTCGTG
701 AGCTGATCCTCGGCTT-CGCATTCTGCCTCTCCG-CCGACTGAGCGCCCGTACGCTC-TTTCGTG
*
31945610 GGTTGGCTTAGGCATACGGAGTTCATTCCATTTTTAAGCATA-AGGAGTTCATTCCCAGTCTAAG
763 GGTTGGCTTAGGCATACGGAGTTCATTCCA--TTGAAGCATACA-GAG--CATT--CAGTCT-AG
* * * * * *
31945674 AGTTTGAGCCACGGTGCATATGCTGGGCTCGGGCATGTTCTGGTGTCACATTTTTTTCGCTCAGG
820 AGTTTGAGCCA--GTGCACATGCTAGGCTC-GACATGTGCT--TGCCACATTTTTTTCGCCCAGG
31945739 G-CAC
880 GCCAC
** *
31945743 -CATCGTCGGAGCATCGCCGGAGGGCCTAACCGACGGCAATAGGGGTTTCAGCGATTGGGGGGGC
1 GCATCGTCGGAGCATCGCCGGAGGGCCTAACCGGTGGC-ATTGGGGTTTCAGCGATTGGGGGGGC
* *
31945807 CAGGGGGTGTACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
65 CAGGGGGTGT-CGCACATGATGTGCGATGGGTGCTGGTACTTAGCCCTTATATTGGCCCCATATC
* *
31945872 CCTCATCAAACCTCAAGAACTCACACCTCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGTC
129 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGTC
* ** * * *
31945937 AGTAGCCATTAAACTGTCTGAAATGCAGACACATTTTTCAAATGGTCACAAAATCTTCTCCACTT
194 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACGTTCACAAAATCTTCTCCACTT
* * *
31946002 CAATTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATATAAGGATCACCTCAACCAAATTT
259 CGATTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACCTCTACCAAATTT
*
31946067 GGGGACAAAACGT-TTTCTAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCA
324 GGGGACAAAA-ATCTTTCTAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCA
*
31946131 TGAAAAATAGAAAACGGGTCATCTTGCCACGAAACTTCAC-TCGAAGGTGTAGGGGACCATTGTA
388 TGAAAAATAGAAAACGGGTCGTCTTGCCACGAAACTTCACAT-GAAGGTGTAGGGGACCATTGTA
**
31946195 TGAATTTACAAGCCATAAAAATGGCATTTACATGGCAGAAATATGAAGATGTGCTTGAACCCACC
452 TGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCTTGAACCCACC
* ** *
31946260 TACCACCCGTTCGATCCCTGATTTGCGCATCCTGCCTCTCTGGTC-AGCTGAGCGTCTGCACACT
517 TACCACCCGTTCGATCCCCGGCTTGCGCATCCTGCCTCTCTGGTCGA-CTGAGCGTC-GCACGCT
* *
31946324 CGTTTCATGGGTTGACTTAGGCATACAAAGTTCATCCTCAATCTAAGCATACGGAGTTCATCCCC
580 CGTTTCAT-GGTTGACTTAGGCATACAAAGTTCATCC-CCATCTAAGCATACGGAGTTCATTCCC
* * ** * * * * * * * *
31946389 AGTCTAAGATCAGATCAAACCGAGGGTTGCAACCA-TAGGATCAACAGTACGTAAGAGGACCGAG
643 AATCTAAGGTTGGACCAGACC-A-GGTTGCGA-CAGTAGGATC--CAGAATGCAGGGGGACCGAG
* * * * * *
31946453 CTGATCCCCGGCTTACGCATTCTGCCTCTCCGGTCGACTGATCGCCCGTATGCCCGTTTCATGGG
703 CTGATCCTCGGCTT-CGCATTCTGCCTCTCC-GCCGACTGAGCGCCCGTACGCTC-TTTCGTGGG
31946518 TTGGCTTAGGCATACGGAGTTCATTCCAT
765 TTGGCTTAGGCATACGGAGTTCATTCCAT
31946547 GTCTAAGCCC
Statistics
Matches: 1492, Mismatches: 152, Indels: 105
0.85 0.09 0.06
Matches are distributed among these distances:
879 21 0.01
880 277 0.19
881 220 0.15
882 19 0.01
883 51 0.03
884 1 0.00
885 9 0.01
886 2 0.00
887 10 0.01
888 3 0.00
891 5 0.00
892 2 0.00
893 14 0.01
894 18 0.01
895 2 0.00
896 1 0.00
897 8 0.01
898 13 0.01
899 6 0.00
900 10 0.01
901 7 0.00
902 36 0.02
903 40 0.03
904 198 0.13
905 275 0.18
906 90 0.06
907 93 0.06
908 18 0.01
910 15 0.01
911 8 0.01
913 20 0.01
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (884 bp):
GCATCGTCGGAGCATCGCCGGAGGGCCTAACCGGTGGCATTGGGGTTTCAGCGATTGGGGGGGCC
AGGGGGTGTCGCACATGATGTGCGATGGGTGCTGGTACTTAGCCCTTATATTGGCCCCATATCCC
TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGTCAG
TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACGTTCACAAAATCTTCTCCACTTCG
ATTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACCTCTACCAAATTTGG
GGACAAAAATCTTTCTAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGA
AAAATAGAAAACGGGTCGTCTTGCCACGAAACTTCACATGAAGGTGTAGGGGACCATTGTATGAA
TTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCTTGAACCCACCTACC
ACCCGTTCGATCCCCGGCTTGCGCATCCTGCCTCTCTGGTCGACTGAGCGTCGCACGCTCGTTTC
ATGGTTGACTTAGGCATACAAAGTTCATCCCCATCTAAGCATACGGAGTTCATTCCCAATCTAAG
GTTGGACCAGACCAGGTTGCGACAGTAGGATCCAGAATGCAGGGGGACCGAGCTGATCCTCGGCT
TCGCATTCTGCCTCTCCGCCGACTGAGCGCCCGTACGCTCTTTCGTGGGTTGGCTTAGGCATACG
GAGTTCATTCCATTGAAGCATACAGAGCATTCAGTCTAGAGTTTGAGCCAGTGCACATGCTAGGC
TCGACATGTGCTTGCCACATTTTTTTCGCCCAGGGCCAC
Found at i:31946374 original size:26 final size:26
Alignment explanation
Indices: 31946344--31946396 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
31946334 GTTGACTTAG
*
31946344 GCATACAAAGTTCATCCTCAATCTAA
1 GCATACAAAGTTCATCCCCAATCTAA
** *
31946370 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAATCTAA
31946396 G
1 G
31946397 ATCAGATCAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACAAAGTTCATCCCCAATCTAA
Found at i:31949298 original size:26 final size:26
Alignment explanation
Indices: 31949264--31949316 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31949254 GTTGACATAG
*
31949264 GCATGCGGAGTTCA-TCTCCAGTCTAA
1 GCATACGGAGTTCATTC-CCAGTCTAA
31949290 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
31949316 G
1 G
31949317 ATCAGATCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:31949791 original size:26 final size:26
Alignment explanation
Indices: 31949761--31949813 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31949751 GTTGGCTTAG
*
31949761 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGCAGTTCATTCCTA-GTCTAA
31949787 GCATACGCAGTTCATTCCTAGTCTAA
1 GCATACGCAGTTCATTCCTAGTCTAA
31949813 G
1 G
31949814 ATCAGACTAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGCAGTTCATTCCTAGTCTAA
Found at i:31950178 original size:26 final size:26
Alignment explanation
Indices: 31950141--31950193 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
31950131 GTTGACTTAG
*
31950141 GCATACGTAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
**
31950167 GCATACGGAGTTCATTGCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
31950193 G
1 G
31950194 ATTGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:31951176 original size:159 final size:158
Alignment explanation
Indices: 31950899--31951202 Score: 376
Period size: 159 Copynumber: 1.9 Consensus size: 158
31950889 TGGATTGGAT
** * * *
31950899 CGAGGGTTGCGGCAGCAGGATCGGTAGCACGCAAGGGGGATCGGGCCGATCTCTGGCTTGCGCAT
1 CGAGGGTTGCGGCAGCAGGATCGACAGCACGAAAGGGGGATCGGGCCGATCCCTGACTTGCGCAT
* * * * * * * * * *
31950964 TCTGCCTCTCGGATCGGCTGAGCGCCCACACGCCCATTTTGTGGGTTGGCTTAGGCTTAGGGAGT
66 TATGCCTCTCCGATCGGCTCAACACCCACACACCCATTTCGTGGGTTGACTTAGGCATACGGAGT
31951029 TCATT-CCATGTCTAATCCCGAGCCAAAC
131 TCATTCCCA-GTCTAATCCCGAGCCAAAC
* * *
31951057 CGAGGGTTGTGGCAGCGGGATCGACAGCACGAAGAGGGGGATCGGGCCGATCCCTGACTTGCGTA
1 CGAGGGTTGCGGCAGCAGGATCGACAGCACGAA-AGGGGGATCGGGCCGATCCCTGACTTGCGCA
* * * * *
31951122 TTATGCCTCTCCGATTGGCTCAACACCCGCACACTCGTTTCGTGGGTTTACTTAGGCATACGGAG
65 TTATGCCTCTCCGATCGGCTCAACACCCACACACCCATTTCGTGGGTTGACTTAGGCATACGGAG
31951187 TTCATTCCCAGTCTAA
130 TTCATTCCCAGTCTAA
31951203 GATCGGACCG
Statistics
Matches: 121, Mismatches: 23, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
158 28 0.23
159 90 0.74
160 3 0.02
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.23
Consensus pattern (158 bp):
CGAGGGTTGCGGCAGCAGGATCGACAGCACGAAAGGGGGATCGGGCCGATCCCTGACTTGCGCAT
TATGCCTCTCCGATCGGCTCAACACCCACACACCCATTTCGTGGGTTGACTTAGGCATACGGAGT
TCATTCCCAGTCTAATCCCGAGCCAAAC
Found at i:31951473 original size:171 final size:170
Alignment explanation
Indices: 31951066--31951474 Score: 378
Period size: 171 Copynumber: 2.4 Consensus size: 170
31951056 CCGAGGGTTG
* * *
31951066 TGGCAGCGGGATCGACAGCACGAAGAGGGGGATCGGGCCGATCCCTGACTTGCGTATTATGCCTC
1 TGGCAGCAGGATCGACAGCACGAAGAGGAGGATC-GGCCGATCCCTGACTTGCGCATTATGCCTC
* * * **
31951131 TCCGATTGGCTCAACACCCGCACACTCGTTTCGTGGGTTTACTTAGGCATACGGAGTTCATTCCC
65 TCCAACTGGCTCAACACCCGCACACTCGTTTCATGGGTTTACTTAGGCATACAAAGTTCATTCCC
* * * * *
31951196 AGTCTAAGATCGGACCGGACAGAGGTTTACAGTAGCAGGAC
130 AGTCTAAGACCAGACCAGACAGAGGGTTACAGCAGCAGGAC
*** * * ** * * * * *
31951237 CAACAGCAGGATCGACAGCAAGCAGAAAAGAATCGGACCGGTCCC-CAGCTTGCTCATTCTGCCT
1 TGGCAGCAGGATCGACAGCACGAAGAGGAGGATCGG-CCGATCCCTGA-CTTGCGCATTATGCCT
* * * *
31951301 CTCCAACCT-GCTGAACGCCCTCACGCTCGTTTCATGGG-TTAGCTTAGGCATACAAAGTTCATT
64 CTCCAA-CTGGCTCAACACCCGCACACTCGTTTCATGGGTTTA-CTTAGGCATACAAAGTTCATT
* * ***
31951364 -CCACGTCTAAGCCCTAG-CCAGACCGAGGGTTGTGGCAGCAGGAC
127 CCCA-GTCTAAGACC-AGACCAGACAGAGGGTTACAGCAGCAGGAC
* * *
31951408 TGGCAGCTGGATCGACAGCACGTAGAGGAGGATCGCGCTGATCCCTGACTTGCGCATTATGCCTC
1 TGGCAGCAGGATCGACAGCACGAAGAGGAGGATCG-GCCGATCCCTGACTTGCGCATTATGCCTC
31951473 TC
65 TC
31951475 AAGCGGGCCT
Statistics
Matches: 182, Mismatches: 48, Indels: 16
0.74 0.20 0.07
Matches are distributed among these distances:
170 9 0.05
171 169 0.93
172 4 0.02
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (170 bp):
TGGCAGCAGGATCGACAGCACGAAGAGGAGGATCGGCCGATCCCTGACTTGCGCATTATGCCTCT
CCAACTGGCTCAACACCCGCACACTCGTTTCATGGGTTTACTTAGGCATACAAAGTTCATTCCCA
GTCTAAGACCAGACCAGACAGAGGGTTACAGCAGCAGGAC
Found at i:31951562 original size:26 final size:26
Alignment explanation
Indices: 31951532--31951584 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
31951522 GTTGACTTAG
*
31951532 GCATACGAAGTTCATCCCCAATCTAA
1 GCATAAGAAGTTCATCCCCAATCTAA
* * *
31951558 GCATAAGGAGTTCATTCCCAGTCTAA
1 GCATAAGAAGTTCATCCCCAATCTAA
31951584 G
1 G
31951585 ATTGGATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATAAGAAGTTCATCCCCAATCTAA
Found at i:31951766 original size:703 final size:696
Alignment explanation
Indices: 31949933--31951926 Score: 2051
Period size: 703 Copynumber: 2.9 Consensus size: 696
31949923 GAGGGCCCGT
* ** *** * * *
31949933 ACGCTCGTTTCGTGGGTTTTCTTAGGCATATGGAGTTCATTCCATGTCTAAGCCCTC-GTCGGAC
1 ACGCTCGTTTCATGGGTTAGCTTAGGCATACAAAGTTCATTCCACGTCTAA-CCC-CAGCCAGAC
* * * * ** *
31949997 CGAGGGTTAG-GGCACCAAGACCGGC-T-ATGGGATCGGCAGCACGCAGAGGGGGACCGTGCTAG
64 CGAGGGTT-GTGGCAGCAAGA--TGCATAATGGGATCGACAGCACGCAGAGGAGGACCACGCTAA
* * * * * * * * * *
31950059 T-CCTCGGCTCGTGCATTATGCCTCTCCGA-CTGGCCCT-CTGGCTGGCTGAGCACCCGCGCGCT
126 TCCCT-GACTTGCGCATTATGCCTCTCCAAGC-GGCCCTCCAGTCT-GCTAAGCACCCACACACT
* * * * *
31950121 CGTTTCGTAGGTTGACTTAGGCATACGTAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTGCC
188 CATTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCCAATCTAAGCATACGGAGTTCATTGCC
* *
31950186 AGTCTAAGATTGGATC-G--GACCGAGGGTTGCGACAGCAGGATCGGTAGCACGCAGGAGGGATC
253 AGTCTAAGATTGGATCGGATGACCGAGGGTTGCGGCAGCAGGATCGGTAGCACGCAGGGGGGATC
* ** * * * *
31950248 GA-CCGATCCCCAACTTGCGCATTCTGCCTCTCCAGTCAGCTAAGGGCCCGCACA-CCCGTTTCG
318 GAGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGTCAGCTGA-CGCCCGCA-AGCCCATTTCG
* *
31950311 TGGGTTGGCTTAGGCTTAAGGAGTTCATTCCACGTCTAAGCCCCAGCCAGACTGAGGGTTGTGGC
381 TGGGTTGGCTTAGGCTTAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGAC-GAGGGTTGTGGC
* ** * * *
31950376 AGTGGGATC-ACAACACGTAAAATGGGATCAGGTCAATCCCTGACTTGCACATTATGCCTCTCCG
445 AGTGGGATCGACAGCACGTAAAGGGGGATCGGGTCGATCCCTGACTTGCGCATTATGCCTCTCCG
* * * * *
31950440 ACTGGCTCAGCGCTCGTACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATC
510 ATTGGCTCAGCGCTCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* ** * * * * * * * * ***
31950505 TAAGATCAGATTGGACTGAGGGTTGCGGTAGTAGGACTAGCAGTAGGATCGACAGCACGCAGGGG
575 TAAGATCGGACCGGACAGAGGGTTACAGTAGCAGGACCAACAGCAGGATCGACAGCAAGCAGAAA
* *** * * * * **
31950570 GGATCGGGTTGATCCCCGGCTTGCATATTTTACCTCTCCGATCGACTGAGTGACCGC
640 GAATCGGACCGATCCCCAGCTTGCATATTCTACCTCTCCAACCGACTGAACGACCGC
* ** * *
31950627 ACGCTCGTTTCGTGGGTTTTCTTAGGCATACGAAGTTCATTCCATGTCTAACCCCAGCCAGACCG
1 ACGCTCGTTTCATGGGTTAGCTTAGGCATACAAAGTTCATTCCACGTCTAACCCCAGCCAGACCG
* * * * * *
31950692 AGGGTTGTGGTAGCAAGATTCATAATGGGATCGGCAGCATGCAGAGGGGGACCATGCTAATCCCT
66 AGGGTTGTGGCAGCAAGATGCATAATGGGATCGACAGCACGCAGAGGAGGACCACGCTAATCCCT
* * * * * * * *
31950757 GGCTTGCGCATTATGCCTTTCCGATCGGCCCTCCGGTCTGCTGAGCACCCACACACTCGTTTCGT
131 GACTTGCGCATTATGCCTCTCCAAGCGGCCCTCCAGTCTGCTAAGCACCCACACACTCATTTCAT
*
31950822 GGGTTGACTTAGGCATAC-ATAGTTCATCCCCAATCTAAGCATACGGAGTTCAATGCCAGTCTAA
196 GGGTTGACTTAGGCATACGA-AGTTCATCCCCAATCTAAGCATACGGAGTTCATTGCCAGTCTAA
* * *
31950886 GATTGGATTGGAT---CGAGGGTTGCGGCAGCAGGATCGGTAGCACGCAAGGGGGATCGGGCCGA
260 GATTGGATCGGATGACCGAGGGTTGCGGCAGCAGGATCGGTAGCACGCAGGGGGGATCGAGCCGA
* * * *
31950948 T-CTCTGGCTTGCGCATTCTGCCTCT-CGGATCGGCTGAGCGCCCACACGCCCATTTTGTGGGTT
325 TCCTC-GGCTTGCGCATTCTGCCTCTCCGG-TCAGCTGA-CGCCCGCAAGCCCATTTCGTGGGTT
* * * *
31951011 GGCTTAGGCTTAGGGAGTTCATTCCATGTCTAATCCCGAGCCAAACCGAGGGTTGTGGCAGCGGG
387 GGCTTAGGCTTAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGA-CGAGGGTTGTGGCAGTGGG
* *
31951076 ATCGACAGCACG-AAGAGGGGGATCGGGCCGATCCCTGACTTGCGTATTATGCCTCTCCGATTGG
451 ATCGACAGCACGTAA-AGGGGGATCGGGTCGATCCCTGACTTGCGCATTATGCCTCTCCGATTGG
* * * * * *
31951140 CTCAACACCCGCACACTCGTTTCGTGGGTTTACTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
515 CTCAGCGCTCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
*
31951205 TCGGACCGGACAGAGGTTTACAGTAGCAGGACCAACAGCAGGATCGACAGCAAGCAGAAAAGAAT
580 TCGGACCGGACAGAGGGTTACAGTAGCAGGACCAACAGCAGGATCGACAGCAAGCAG-AAAGAAT
* * * *
31951270 CGGACCGGTCCCCAGCTTGC-TCATTCTGCCTCTCCAACCTG-CTGAACGCCCTC
644 CGGACCGATCCCCAGCTTGCAT-ATTCTACCTCTCCAACC-GACTGAACGACCGC
*
31951323 ACGCTCGTTTCATGGGTTAGCTTAGGCATACAAAGTTCATTCCACGTCTAAGCCCTAGCCAGACC
1 ACGCTCGTTTCATGGGTTAGCTTAGGCATACAAAGTTCATTCCACGTCTAA-CCCCAGCCAGACC
* ** * * * *
31951388 GAGGGTTGTGGCAGCAGGACTGGCA-GCT-GGATCGACAGCACGTAGAGGAGGATCGCGCTGATC
65 GAGGGTTGTGGCAGCAAGA-T-GCATAATGGGATCGACAGCACGCAGAGGAGGACCACGCTAATC
* *** *
31951451 CCTGACTTGCGCATTATGCCTCT-CAAGCGGGCCTCTTCAG-CTGGCTAAGCACCTGTACGCTCA
128 CCTGACTTGCGCATTATGCCTCTCCAAGC-GGCC-CTCCAGTCT-GCTAAGCACCCACACACTCA
* *
31951514 TTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCCAATCTAAGCATAAGGAGTTCATTCCCAG
190 TTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCCAATCTAAGCATACGGAGTTCATTGCCAG
** * * **** *
31951579 TCTAAGATTGGATCGGATCGAACCGAGGGTTATGGCAGAAGGTTTTACAGCATGCAGGGGGGATC
255 TCTAAGATTGGATCGGAT-G-ACCGAGGGTTGCGGCAGCAGGATCGGTAGCACGCAGGGGGGATC
* *
31951644 GAGCCGATCCTCGGCTTGTGCATTCTGCCTCTCCGGCCAGCTGACTGCCCGCAAGCCCATTTCGT
318 GAGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGTCAGCTGAC-GCCCGCAAGCCCATTTCGT
* * *
31951709 GGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCAGATCGAGGGTTGTGACA
382 GGGTTGGCTTAGGCTTAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGA-CGAGGGTTGTGGCA
* * * * * **
31951774 ATGGGACCGGCAGCACGTAAAGGGGGATCGGGTCGATCCCCGGCTTATGCATTATGCCTCTCCGA
446 GTGGGATCGACAGCACGTAAAGGGGGATCGGGTCGATCCCTGACTTGCGCATTATGCCTCTCCGA
* * * * *
31951839 TCGGCTCAGCGGTCGAACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCA
511 TTGGCTCAGCGCTCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
* * *
31951904 AAGATCGGATCAGACTGAGGGTT
576 AAGATCGGACCGGACAGAGGGTT
31951927 GCGACAGAAG
Statistics
Matches: 1087, Mismatches: 176, Indels: 65
0.82 0.13 0.05
Matches are distributed among these distances:
691 1 0.00
692 3 0.00
693 219 0.20
694 169 0.16
695 151 0.14
696 88 0.08
697 84 0.08
698 96 0.09
699 3 0.00
702 1 0.00
703 264 0.24
704 8 0.01
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (696 bp):
ACGCTCGTTTCATGGGTTAGCTTAGGCATACAAAGTTCATTCCACGTCTAACCCCAGCCAGACCG
AGGGTTGTGGCAGCAAGATGCATAATGGGATCGACAGCACGCAGAGGAGGACCACGCTAATCCCT
GACTTGCGCATTATGCCTCTCCAAGCGGCCCTCCAGTCTGCTAAGCACCCACACACTCATTTCAT
GGGTTGACTTAGGCATACGAAGTTCATCCCCAATCTAAGCATACGGAGTTCATTGCCAGTCTAAG
ATTGGATCGGATGACCGAGGGTTGCGGCAGCAGGATCGGTAGCACGCAGGGGGGATCGAGCCGAT
CCTCGGCTTGCGCATTCTGCCTCTCCGGTCAGCTGACGCCCGCAAGCCCATTTCGTGGGTTGGCT
TAGGCTTAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACGAGGGTTGTGGCAGTGGGATCGA
CAGCACGTAAAGGGGGATCGGGTCGATCCCTGACTTGCGCATTATGCCTCTCCGATTGGCTCAGC
GCTCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
CGGACAGAGGGTTACAGTAGCAGGACCAACAGCAGGATCGACAGCAAGCAGAAAGAATCGGACCG
ATCCCCAGCTTGCATATTCTACCTCTCCAACCGACTGAACGACCGC
Found at i:31951864 original size:159 final size:159
Alignment explanation
Indices: 31951636--31952382 Score: 491
Period size: 159 Copynumber: 4.7 Consensus size: 159
31951626 CAGCATGCAG
* * ** * ** * * *
31951636 GGGGGATCGAGCCGATCCTCGGCTTGTGCATTCTGCCTCTCCGGCCAGCTGACTGCCCGCAA-GC
1 GGGGGATCGGGCCGATCCCCGGCTTACGCATTATGCCTCTCCGATCGGCTCAGTGCCC-CAACGC
* * * * * *
31951700 CCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAG-CCAGATCGAG
65 TCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCC-AGACCAGATCAAG
*
31951764 GGTTGTGACAATGGGACCGGCAGCACGTAAA
129 GGTTGTGACAATGGGACCGACAGCACGTAAA
* * * ** *
31951795 GGGGGATCGGGTCGATCCCCGGCTTATGCATTATGCCTCTCCGATCGGCTCAGCGGTCGAACGCT
1 GGGGGATCGGGCCGATCCCCGGCTTACGCATTATGCCTCTCCGATCGGCTCAGTGCCCCAACGCT
* ** * ** * * *
31951860 CATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCAAAGATCGGATCAGA-CTGAG
66 CGTTTCATGGGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCAGACCAGATC-AAG
* * ** ** *
31951923 GGTTGCGACAGA-AGGTTCGGTAGCACG-CAA
129 GGTTGTGACA-ATGGGACCGACAGCACGTAAA
* * * * * * * * *
31951953 -GGGGATAGGGCCAATCCCCGGCTTGCGTATTCTGCCTCTCCCG-CCAGCTGAG-GACCCACACG
1 GGGGGATCGGGCCGATCCCCGGCTTACGCATTATGCCTCT-CCGATCGGCTCAGTGCCCCA-ACG
* * * * *
31952015 CCCGTTTCATGGGTCGACTTAGGCATAGGGAGTTCATTCCATGTCTAAACCCCAG-CC-GAACCA
64 CTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCT-AAGCCCAGACCAG-ATCA
** ** * *
31952078 AGGGTTGTGGTAGCGGGACCGACAGCACGCAGA
127 AGGGTTGTGACAATGGGACCGACAGCACGTAAA
* * * * * * *
31952111 GGGGGATCGGGCCGATCCTCAGCTTGCACATTATGCCTCTCCGGTCGGCTCAATGCCCAAACGCT
1 GGGGGATCGGGCCGATCCCCGGCTTACGCATTATGCCTCTCCGATCGGCTCAGTGCCCCAACGCT
* ** * *
31952176 CGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCTCA-GTCTAAGATCAGACCGGATTAAGG
66 CGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTC-CATGTCTAAGCCCAGACCAGATCAAGG
* **
31952240 G-T-TG-CAATAGCAGGATCGACAGCACGTAGG
130 GTTGTGACAAT-G--GGACCGACAGCACGTAAA
* * * * * * * * * *
31952270 GGGGGACCAGGTCGGTCCCCGACTTACGCATTCTGCCTCTCC-AGCAGGCTGAGTGCCCCCACAC
1 GGGGGATCGGGCCGATCCCCGGCTTACGCATTATGCCTCTCCGATC-GGCTCAGTGCCCCAACGC
*
31952334 TCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
65 TCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGC
31952383 ATATGGAGTT
Statistics
Matches: 450, Mismatches: 114, Indels: 48
0.74 0.19 0.08
Matches are distributed among these distances:
156 8 0.02
157 100 0.22
158 27 0.06
159 304 0.68
160 11 0.02
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (159 bp):
GGGGGATCGGGCCGATCCCCGGCTTACGCATTATGCCTCTCCGATCGGCTCAGTGCCCCAACGCT
CGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAGACCAGATCAAGGG
TTGTGACAATGGGACCGACAGCACGTAAA
Found at i:31952243 original size:316 final size:316
Alignment explanation
Indices: 31951650--31952380 Score: 795
Period size: 316 Copynumber: 2.3 Consensus size: 316
31951640 GATCGAGCCG
* * * * * * * *
31951650 ATCCTCGGCTTGTGCATTCTGCCTCTCCGGCCAGCTGACTGCCCGCAAGCCCATTTCGTGGGTTG
1 ATCCCCGGCTTGCGCATTCTGCCTCTCCAGCCAGCTGA-GGCCCACACGCCCGTTTCATGGGTTG
* * * * *
31951715 GCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCAGATCGAGGGTTGTGACAATGGGA
65 GCTTAGGCATAGGGAGTTCATTCCATGTCTAAACCCCAGCCAGACCAAGGGTTGTGACAACGGGA
* * * * **
31951780 CCGGCAGCACGTAAAGGGGGATCGGGTCGATCCCCGGCTTATGCATTATGCCTCTCCGATCGGCT
130 CCGACAGCACGCAAAGGGGGATCGGGCCGATCCCCAGCTTACACATTATGCCTCTCCGATCGGCT
* ** * ** *
31951845 CAGCGGTCGAACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCAAAGATC
195 CAACGCCCAAACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCAAAGATC
* * * * * ** *
31951910 GGATCAGACTGAGGGTTGCGACAGAAGGTTCGGTAGCACGCA-AGGGGA-TAGGGCCA
260 AGACCAGACTAAGGGTTGCAACAGAAGGATCGACAGCACGCAGAGGGGACCA-GGCCA
* * *
31951966 ATCCCCGGCTTGCGTATTCTGCCTCTCCCGCCAGCTGAGGACCCACACGCCCGTTTCATGGGTCG
1 ATCCCCGGCTTGCGCATTCTGCCTCTCCAGCCAGCTGAGG-CCCACACGCCCGTTTCATGGGTTG
* ** *
31952031 ACTTAGGCATAGGGAGTTCATTCCATGTCTAAACCCCAGCC-GAACCAAGGGTTGTGGTAGCGGG
65 GCTTAGGCATAGGGAGTTCATTCCATGTCTAAACCCCAGCCAG-ACCAAGGGTTGTGACAACGGG
* * * *
31952095 ACCGACAGCACGCAGAGGGGGATCGGGCCGATCCTCAGCTTGCACATTATGCCTCTCCGGTCGGC
129 ACCGACAGCACGCAAAGGGGGATCGGGCCGATCCCCAGCTTACACATTATGCCTCTCCGATCGGC
* * * *
31952160 TCAATGCCCAAACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCTCAGTCTAAGAT
194 TCAACGCCCAAACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCAAAGAT
* * * * * * * *
31952225 CAGACCGGATTAAGGGTTGCAATAGCAGGATCGACAGCACGTAGGGGGGGACCAGGTCG
259 CAGACCAGACTAAGGGTTGCAACAGAAGGATCGACAGCACGCA-GAGGGGACCAGGCCA
* * * * * *
31952284 GTCCCCGACTTACGCATTCTGCCTCTCCAG-CAGGCTGAGTGCCCCCACACTCGTTTCATGGGTT
1 ATCCCCGGCTTGCGCATTCTGCCTCTCCAGCCA-GCTGAG-GCCCACACGCCCGTTTCATGGGTT
*
31952348 GGCTTAGGCATACGGAGTTCATTCCATGTCTAA
64 GGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
31952381 GCATATGGAG
Statistics
Matches: 341, Mismatches: 67, Indels: 12
0.81 0.16 0.03
Matches are distributed among these distances:
315 2 0.01
316 246 0.72
317 2 0.01
318 89 0.26
319 2 0.01
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.23
Consensus pattern (316 bp):
ATCCCCGGCTTGCGCATTCTGCCTCTCCAGCCAGCTGAGGCCCACACGCCCGTTTCATGGGTTGG
CTTAGGCATAGGGAGTTCATTCCATGTCTAAACCCCAGCCAGACCAAGGGTTGTGACAACGGGAC
CGACAGCACGCAAAGGGGGATCGGGCCGATCCCCAGCTTACACATTATGCCTCTCCGATCGGCTC
AACGCCCAAACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCAAAGATCA
GACCAGACTAAGGGTTGCAACAGAAGGATCGACAGCACGCAGAGGGGACCAGGCCA
Found at i:31952385 original size:26 final size:26
Alignment explanation
Indices: 31952355--31952407 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31952345 GTTGGCTTAG
31952355 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
31952381 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
31952407 G
1 G
31952408 ATCGGACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:31952730 original size:158 final size:165
Alignment explanation
Indices: 31952457--31952891 Score: 474
Period size: 158 Copynumber: 2.6 Consensus size: 165
31952447 CAGGATCAAT
* * * * * * ***
31952457 AGCACGCAG-GGGGGACAGGGCCGATCCCCGGCTTACGCATTTTGCCTGTCCGGCCGGCTGAATG
1 AGCACGCAGAGGAGGACCGGGCC-ATCCCCGGCTTACACATTATGCCTCTCCGACCGGCTGAGCA
* * *
31952521 CCCGCATGCCCGTGTCATGGGTTGGCTTAGGCATA-AGGAGTTCATTCCATGTCTAAGCCCCAGT
65 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACA-GAGTTCATTCCATGTCTAAGCCCCAGT
* * * *
31952585 TGGACCGAGGGTTATGGCAG-CGG-G-A-C-CGAT-G
129 CGGACCGACGGTTATGGCAGTAGGAGCAGCAAGATAG
* * * *
31952616 -GCGCGCAGAGGAGGATCGGGCCATCCTCGGCTTGCACATTATGCCTCTCCGACCGGCTGAGCAC
1 AGCACGCAGAGGAGGACCGGGCCATCCCCGGCTTACACATTATGCCTCTCCGACCGGCTGAGCAC
* *
31952680 CCGCACGCTCGTTTCGTGGGTTGGCTTAGACATACAGAGTTCATTCCATGTCTAAGCCCCAGTCG
66 CCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGTCG
31952745 GACCGACGGTTATGGCAGTAGGACCAGCAGCAAGATCAG
131 GACCGACGGTTATGGCAGTAGG---AGCAGCAAGAT-AG
* * * *
31952784 CAGCACGCAGAGGGGGACCGGGCTGATCCCCGGCTTACACATTATGCCTCTCCAACGGGCTGAGC
1 -AGCACGCAGAGGAGGACCGGGC-CATCCCCGGCTTACACATTATGCCTCTCCGACCGGCTGAGC
* * *
31952849 ACCCGCACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTT
64 ACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTT
31952892 TATCCCCAGT
Statistics
Matches: 226, Mismatches: 35, Indels: 18
0.81 0.13 0.06
Matches are distributed among these distances:
158 114 0.50
159 13 0.06
163 1 0.00
164 1 0.00
165 1 0.00
166 3 0.01
168 1 0.00
170 18 0.08
171 74 0.33
ACGTcount: A:0.19, C:0.29, G:0.31, T:0.21
Consensus pattern (165 bp):
AGCACGCAGAGGAGGACCGGGCCATCCCCGGCTTACACATTATGCCTCTCCGACCGGCTGAGCAC
CCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGTCG
GACCGACGGTTATGGCAGTAGGAGCAGCAAGATAG
Found at i:31952912 original size:26 final size:26
Alignment explanation
Indices: 31952883--31952932 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
31952873 GACTTAGGCA
* * *
31952883 TACGGAGTTTATCCCCAGTCTAAGCG
1 TACGAAGTTCATCCCCAGCCTAAGCG
*
31952909 TACGAAGTTCATTCCCAGCCTAAG
1 TACGAAGTTCATCCCCAGCCTAAG
31952933 ATAGGACCGA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (26 bp):
TACGAAGTTCATCCCCAGCCTAAGCG
Found at i:31953414 original size:26 final size:26
Alignment explanation
Indices: 31953378--31953433 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
31953368 TGGGTTGGCT
31953378 TAAGTATACGGACTTCATT-CCATGTC
1 TAAGTATACGGACTTCATTCCCA-GTC
*
31953404 TAAGTATACGGAGTTCATTCCCAGTC
1 TAAGTATACGGACTTCATTCCCAGTC
31953430 TAAG
1 TAAG
31953434 ATCAGACCGG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 25 0.89
27 3 0.11
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.32
Consensus pattern (26 bp):
TAAGTATACGGACTTCATTCCCAGTC
Found at i:31953554 original size:514 final size:507
Alignment explanation
Indices: 31951943--31953624 Score: 1650
Period size: 514 Copynumber: 3.3 Consensus size: 507
31951933 GAAGGTTCGG
* * * * *
31951943 TAGCACGCA-AGGGGATAGGGCCAATCCCCGGCTTGCGTATTCTGCCTCTCCCGCC-AGCTGAG-
1 TAGCACGCAGGGGGGACAGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGA-CTGAGC
* * * *
31952005 GACCCACACGCCCGTTTCATGGGTCGACTTAGGCATAGGGAGTTCATTCCATGTCTAAACCCCAG
65 G-CCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG
* * * * * * *
31952070 CCGAACCAAGGGTTGTGGTAGCGGGACCGACAGCACGCAGAGGGGGATCGGGCCGATCCTCAGCT
129 TCGGACCGAGGGTTGTGGCAGCGGGACTGGCAGCA--CAGAGGGGGATCGGGCCGATCCTCGGCT
* *
31952135 TGCACATTATGCCTCTCCGGTCGGCTCAATGCCCAAACGCTCGTTTCATGGGTTGACTTAGGCAT
192 TGCACATTATGCCTCTCCGGTCGGCTCAGTGCCCGAACGCTCGTTTCATGGGTTGACTTAGGCAT
* ** * * * *
31952200 ACAGAGTTCATTCTCAGTCTAAGATCAGACCGGA-TTAAGGGTTGCAATAGCAGGATCGACAGCA
257 ACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAA-GGTTGCGACAACAGGATTGACAGCA
** * * *
31952264 CGTAGGGGGGGACCAGGTCGGTCCCCGACTTACGCATTCTGCCTCTCCAGCAGGCTGAGTGCCCC
321 CACA-GGGGGGACC-GGTCGGTCCCCGACTTAAGCATTCTGCCTCTCCAACAGGCTGAGTGCCCG
* *
31952329 CACACTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATGGAGTTC
384 CACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTC
* * * * * *
31952394 ATTCCCAGTCTAAGATCGGACCGAATCGAGAGTTGCAGCAACAGGACCAGTAGCAGGATCAA
449 ATTCCCAGTCTAAGATCAGACCGAATCGAGGGTTG-AGCAGCAAGACCAGCAG--GGATCGA
* * * * **
31952456 TAGCACGCAGGGGGGACAGGGCCGATCCCCGGCTTACGCATTTTGCCTGTCCGGCCGGCTGAATG
1 TAGCACGCAGGGGGGACAGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCG
* * * *
31952521 CCCGCATGCCCGTGTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGTT
66 CCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTC
* * *
31952586 GGACCGAGGGTTATGGCAGCGGGACCGATGGC-GCGCAGAGGAGGATCGGGCC-ATCCTCGGCTT
131 GGACCGAGGGTTGTGGCAGCGGGA-C--TGGCAGCACAGAGGGGGATCGGGCCGATCCTCGGCTT
** * ** * * * *
31952649 GCACATTATGCCTCTCCGACCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGACATA
193 GCACATTATGCCTCTCCGGTCGGCTCAGTGCCCGAACGCTCGTTTCATGGGTTGACTTAGGCATA
** * *
31952714 CAGAGTTCATT-CCATGTCTAAGCCCCAG-TCGGACCGACGGTTATGGCAGTAGGACCAGCAGCA
258 CAGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCGAAGG-T-T-GC-----GA-CA--A-CA
* * * * * * *
31952777 AGA-TCAGCAGCACGCAGAGGGGGACCGGGCTGATCCCCGGCTTACA-CATTATGCCTCTCCAAC
309 GGATTGA-CAGCACACAG-GGGGGACCGGTC-GGTCCCCGACTTA-AGCATTCTGCCTCTCCAAC
* ** * * * *
31952840 GGGCTGAGCACCCGCACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTTATCCCCA-GTCT
370 AGGCTGAGTGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCT
* * *
31952904 AAGCGTACGAAGTTCATTCCCAGCCTAAGAT-AGGACCGAATCGAGGGTT-----GC-A-A-CAG
434 AAGCATACGGAGTTCATTCCCAGTCTAAGATCA-GACCGAATCGAGGGTTGAGCAGCAAGACCAG
31952960 CA-GGATCGA
498 CAGGGATCGA
* * * * * * * * *
31952969 TAGTACGTAGGGGGGATTA-GGCTGATCCTCAGCTTGCGCACTCTGCCTCTCCGGCAGGCTGAGC
1 TAGCACGCAGGGGGGA-CAGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGC
* * * * *
31953033 CCCCGCACGTCCATTTCGTGTGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGT
65 GCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGT
** * *
31953098 CGGATTGAGGGTTGTGGCAGCGGGACTGGCAGCACATAGAGGGGGATCGAGCCGATCCCCGGCTT
130 CGGACCGAGGGTTGTGGCAGCGGGACTGGCAGCAC--AGAGGGGGATCGGGCCGATCCTCGGCTT
* * ** * *
31953163 ACGCATTATGCCTCTTTGGTCGGCTCAGTGCCCGGACGCTTGTTTCATGGGTTGACTTAGGCATA
193 GCACATTATGCCTCTCCGGTCGGCTCAGTGCCCGAACGCTCGTTTCATGGGTTGACTTAGGCATA
31953228 CAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAAGGTTGCGACAACAGGATTGACAGCACA
258 CAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAAGGTTGCGACAACAGGATTGACAGCACA
* * * * *
31953293 CTGGGGGGATCGGATCGGTCCCCGACTTAAGCATTCTACCTCTCCGATC-GGTTGAGTGCCCGCA
323 CAGGGGGGACCGG-TCGGTCCCCGACTTAAGCATTCTGCCTCTCC-AACAGGCTGAGTGCCCGCA
* * * * *
31953357 CGCTCGTTTCGTGGGTTGGCTTAAGTATACGGACTTCATTCCATGTCTAAGTATACGGAGTTCAT
386 CGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCAT
*
31953422 TCCCAGTCTAAGATCAGACCGGA-CTGAGGGTTGAGGCAGCAAGACCAGCAGTGGGATCGA
451 TCCCAGTCTAAGATCAGACCGAATC-GAGGGTTGA-GCAGCAAGACCAGCA--GGGATCGA
* * * * *
31953482 CAACACGCAGGGGGGGACCGGGCCGATCCCCGGTTTGTGCATTCTGCCTCTCCGGCCGACTGAGC
1 TAGCACGCA-GGGGGGACAGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGC
**** * *
31953547 GCCCGCACATTTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGC
65 GCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGT
31953612 CAGG-CCGAGGGTT
130 C-GGACCGAGGGTT
31953625 TTGGTAGCAG
Statistics
Matches: 936, Mismatches: 177, Indels: 111
0.76 0.14 0.09
Matches are distributed among these distances:
500 5 0.01
501 120 0.13
502 16 0.02
503 3 0.00
505 2 0.00
506 2 0.00
507 2 0.00
508 1 0.00
509 1 0.00
510 9 0.01
511 5 0.01
512 4 0.00
513 260 0.28
514 337 0.36
515 8 0.01
516 8 0.01
517 3 0.00
519 1 0.00
521 1 0.00
522 1 0.00
524 5 0.01
525 139 0.15
526 3 0.00
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.22
Consensus pattern (507 bp):
TAGCACGCAGGGGGGACAGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCG
CCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTC
GGACCGAGGGTTGTGGCAGCGGGACTGGCAGCACAGAGGGGGATCGGGCCGATCCTCGGCTTGCA
CATTATGCCTCTCCGGTCGGCTCAGTGCCCGAACGCTCGTTTCATGGGTTGACTTAGGCATACAG
AGTTCATTCCCAGTCTAAGATCAGACCGGACCGAAGGTTGCGACAACAGGATTGACAGCACACAG
GGGGGACCGGTCGGTCCCCGACTTAAGCATTCTGCCTCTCCAACAGGCTGAGTGCCCGCACGCTC
GTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCA
GTCTAAGATCAGACCGAATCGAGGGTTGAGCAGCAAGACCAGCAGGGATCGA
Found at i:31953716 original size:13 final size:13
Alignment explanation
Indices: 31953698--31953725 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
31953688 TTCGTATTAT
31953698 GCCTCTCCGATCG
1 GCCTCTCCGATCG
31953711 GCCTCTCCGATCG
1 GCCTCTCCGATCG
31953724 GC
1 GC
31953726 TGAATGCCCG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.07, C:0.46, G:0.25, T:0.21
Consensus pattern (13 bp):
GCCTCTCCGATCG
Found at i:31954318 original size:158 final size:158
Alignment explanation
Indices: 31953861--31954322 Score: 425
Period size: 158 Copynumber: 2.9 Consensus size: 158
31953851 TAGCACGTAG
* * * * * * * *
31953861 GGGGGACCAGGCCGATCC-CTGACTTACGCATTCTACCTCTTCGGCTGGCTGAGCACCTGTACGC
1 GGGGGACCTGGTCGATCCTC-GACTTACGCATTCTGCCTCTCCGACCGGCTGAGCGCC-GAACGC
* * * * *
31953925 CCGTTTCGTGGGTTGGATTAGGCATAGGGAGTTCATTCCATGTCTAAACCCCAG-CCGAACTGAA
64 TCGTTTCGTGGGTTGGATTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCAGAA-TGAG
* * ** *
31953989 AGTTGTGGCAGCGGGACTGGCAACACGTAGA
128 GGTTGTGGCAGCAGGACTAACAACACGCAGA
* * * * *
31954020 GGGGGACTTGGTCGATCCTCGGCTTACGCATTATGCCTCTCCGATCGGCTCAGCGCCCGAACGCT
1 GGGGGACCTGGTCGATCCTCGACTTACGCATTCTGCCTCTCCGACCGGCTGAGCG-CCGAACGCT
** * ** *
31954085 TATTTCGTGGGTT-GACTTAGGCATACGGAGTTCATTCCCA-GACTAAG-ATCGGATCAGAATGA
65 CGTTTCGTGGGTTGGA-TTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAG-TCAGAATGA
** * *
31954147 GGGTTACGACAGCAGGA-TCAACAGCACGCAG-
127 GGGTTGTGGCAGCAGGACT-AACAACACGCAGA
* * * *
31954178 GGGGGACCTGGTCGGTCTTCGACTTACACATTCTGCCTCTCCGACCGGCTGAGCGCTCGCACGCT
1 GGGGGACCTGGTCGATCCTCGACTTACGCATTCTGCCTCTCCGACCGGCTGAGCGC-CGAACGCT
* * * *
31954243 CGTTTCGTGGGTTGGATTAGGCATACGGCGTTCATTTCATGTCTAAGCCCCAGTCGGAAGGAGGG
65 CGTTTCGTGGGTTGGATTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCAGAATGAGGG
31954308 TTGTGGCAGCAGGAC
130 TTGTGGCAGCAGGAC
31954323 CGGTAGCGGG
Statistics
Matches: 236, Mismatches: 55, Indels: 24
0.75 0.17 0.08
Matches are distributed among these distances:
157 3 0.01
158 116 0.49
159 107 0.45
160 10 0.04
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (158 bp):
GGGGGACCTGGTCGATCCTCGACTTACGCATTCTGCCTCTCCGACCGGCTGAGCGCCGAACGCTC
GTTTCGTGGGTTGGATTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCAGAATGAGGGT
TGTGGCAGCAGGACTAACAACACGCAGA
Found at i:31954872 original size:684 final size:684
Alignment explanation
Indices: 31953521--31954974 Score: 2004
Period size: 684 Copynumber: 2.1 Consensus size: 684
31953511 CCGGTTTGTG
* * * * *
31953521 CATTCTGCCTCTCCGGCCGACTGAGCGCCCGCACATTTGTTTCATGGGTTGGCTTAGGCATACGG
1 CATTCTGCCTCTCCGACCGGCTGAGCG-CCGCACGTTCGTTTCGTGGGTTGGCTTAGGCATACGG
* * * *
31953586 AGTTCATTCCATGTCTAAGCCCCAGCCAGGCCGAGGGTTTTGGTAGCAGGACCGACAGCGGGATC
65 AGTTCATTTCATGTCTAAGCCCCAGCCAGGACGAGGGTTGTGGCAGCAGGACCGACAGCGGGATC
* * *
31953651 GGCAGCAAGCAAAGGAAGACCAGGCTGATCCTCGACTTTCGTATTATGCCTCTCCGATCGGCCTC
130 GACAGCAAGCAAAAGAAGACCAGGCTGATCCTCGACTTACGTATTATGCCTCTCCGATCGGCCTC
* * * *
31953716 TCCGATCGGCTGAATGCCCGTATGCTTGTTTCATGTGTTGACTTAGGCATACGGAGTTCACCCCC
195 TCCGATCGGCTGAATGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCACCCCC
* *
31953781 AGTCTAAGCATACAGAGTTCATTCCTAGTCTAAGATTGAACTGGATCGAGGGTTGCAACAACAGG
260 AGTCTAAGCATACAGAGTTCATTCCTAGTCTAAGATCGAACTGGACCGAGGGTTGCAACAACAGG
** * * * * * *
31953846 ATTGGTAGCACGTAGGGGGGACCAGGCCGATCCCTGACTTACGCATTCTACCTCTTCGGCTGGCT
325 ATTGACACCACGTAAGGGGGACCAGGCCGATCCCCGACTTACGCATTCTACCTCTCCGACCGGCT
* *
31953911 GAGCACCTGTACGCCCGTTTCGTGGGTTGGATTAGGCATAGGGAGTTCATTCCATGTCTAAACCC
390 GAGCACCCGTACGCCCGTTTCATGGGTTGGATTAGGCATAGGGAGTTCATTCCATGTCTAAACCC
* ** * * *
31953976 CAGCCGAACTGAAAGTTGTGGCAGCGGGACTGGCAACACGTAGAGGGGGACTTGGTCGATCCTCG
455 CAGCCGAACTGAAAGTTGTGGCAGCGAGACCAGCAACACGCAGAGAGGGACCTGGTCGATCCTCG
* * * *
31954041 GCTTACGCATTATGCCTCTCCGATCGGCTCAGCGCCCGAACGCTTATTTCGTGGGTTGACTTAGG
520 ACTTACGCATTATGCCTCTCCGATCGGCTCAACGCCAGAACGCTCATTTCGTGGGTTGACTTAGG
*
31954106 CATACGGAGTTCATTCCCAGACTAAGATCGGATCAGAATGAGGGTTACGACAGCAGGATCAACAG
585 CATACGGAGTTCATTCCCAGACTAAGATCAGATCAGAATGAGGGTTACGACAGCAGGATCAACAG
* *
31954171 CACGCAGGGGGGACCTGGTCGGT-CTTCGACTTACA
650 CACGCAGGGGGGACCTGGCCGGTCCCT-GACTTACA
* *
31954206 CATTCTGCCTCTCCGACCGGCTGAGCGCTCGCACGCTCGTTTCGTGGGTTGGATTAGGCATACGG
1 CATTCTGCCTCTCCGACCGGCTGAGCGC-CGCACGTTCGTTTCGTGGGTTGGCTTAGGCATACGG
* * * **
31954271 CGTTCATTTCATGTCTAAGCCCCAGTC-GGAAGGAGGGTTGTGGCAGCAGGACCGGTAGCGGGAT
65 AGTTCATTTCATGTCTAAGCCCCAGCCAGG-ACGAGGGTTGTGGCAGCAGGACCGACAGCGGGAT
* * *
31954335 CGACAGTAGGCAAAAGAGGACCAGGCTGATCCTC-AGCTTACGTATTATGCCTCTCCGATCGGCC
129 CGACAGCAAGCAAAAGAAGACCAGGCTGATCCTCGA-CTTACGTATTATGCCTCTCCGATCGGCC
* * *
31954399 TTTTCGA-CTGGCTGAGTGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCACC
193 TCTCCGATC-GGCTGAATGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCACC
* * * *
31954463 CCCAGTCTAAGCATACGGAGTTTATTCCTAGTCTAAGATCGAACTGGACCGAGGGTTGCGAC-GC
257 CCCAGTCTAAGCATACAGAGTTCATTCCTAGTCTAAGATCGAACTGGACCGAGGGTTGCAACAAC
* * *
31954527 AGGATTGACACCACGTAAGGGGGACCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCG
322 AGGATTGACACCACGTAAGGGGGACCAGGCCGATCCCCGACTTACGCATTCTACCTCTCCGACCG
** *
31954592 GCTGAGCACCCGTACGCTTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAA
387 GCTGAGCACCCGTACGCCCGTTTCATGGGTTGGATTAGGCATAGGGAGTTCATTCCATGTCTAAA
* * *
31954657 CCCTAGCCAGATC-GAGAGTTGTGGCAGCGAGACCAGCAACACGCAGAGAGGGACCTGGTCGATC
452 CCCCAGCC-GAACTGAAAGTTGTGGCAGCGAGACCAGCAACACGCAGAGAGGGACCTGGTCGATC
* * * *
31954721 CTCGACTTACGCATTATGCCTCTTCGATCGGCTCAATGCCATAACGCTCGTTTCGTGGGTTGACT
516 CTCGACTTACGCATTATGCCTCTCCGATCGGCTCAACGCCAGAACGCTCATTTCGTGGGTTGACT
* * * * * *
31954786 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTGCGATAGCAGGATCG
581 TAGGCATACGGAGTTCATTCCCAGACTAAGATCAGATCAGAATGAGGGTTACGACAGCAGGATCA
* * * * *
31954851 ACAGTATGCAGGGGTGACCTGGCCGGTCCCTGACTTGCG
646 ACAGCACGCAGGGGGGACCTGGCCGGTCCCTGACTTACA
* * * *
31954890 CATTCTGCCTCTTCGATCGGTTGAGCGCCTGCACGTTCATTTCGTGGGTTGGCTTAGGCATACGG
1 CATTCTGCCTCTCCGACCGGCTGAGCGCC-GCACGTTCGTTTCGTGGGTTGGCTTAGGCATACGG
31954955 AGTTCA-TTCTATGTCTAAGC
65 AGTTCATTTC-ATGTCTAAGC
31954975 ATATGGAGTC
Statistics
Matches: 672, Mismatches: 89, Indels: 17
0.86 0.11 0.02
Matches are distributed among these distances:
683 4 0.01
684 387 0.58
685 281 0.42
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.24
Consensus pattern (684 bp):
CATTCTGCCTCTCCGACCGGCTGAGCGCCGCACGTTCGTTTCGTGGGTTGGCTTAGGCATACGGA
GTTCATTTCATGTCTAAGCCCCAGCCAGGACGAGGGTTGTGGCAGCAGGACCGACAGCGGGATCG
ACAGCAAGCAAAAGAAGACCAGGCTGATCCTCGACTTACGTATTATGCCTCTCCGATCGGCCTCT
CCGATCGGCTGAATGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCACCCCCA
GTCTAAGCATACAGAGTTCATTCCTAGTCTAAGATCGAACTGGACCGAGGGTTGCAACAACAGGA
TTGACACCACGTAAGGGGGACCAGGCCGATCCCCGACTTACGCATTCTACCTCTCCGACCGGCTG
AGCACCCGTACGCCCGTTTCATGGGTTGGATTAGGCATAGGGAGTTCATTCCATGTCTAAACCCC
AGCCGAACTGAAAGTTGTGGCAGCGAGACCAGCAACACGCAGAGAGGGACCTGGTCGATCCTCGA
CTTACGCATTATGCCTCTCCGATCGGCTCAACGCCAGAACGCTCATTTCGTGGGTTGACTTAGGC
ATACGGAGTTCATTCCCAGACTAAGATCAGATCAGAATGAGGGTTACGACAGCAGGATCAACAGC
ACGCAGGGGGGACCTGGCCGGTCCCTGACTTACA
Found at i:31955184 original size:26 final size:26
Alignment explanation
Indices: 31955155--31955207 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
31955145 GTTGGTTTAG
*
31955155 GCATACGGATTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
31955181 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
31955207 G
1 G
31955208 ATCGAATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:31955514 original size:26 final size:26
Alignment explanation
Indices: 31955461--31955516 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
31955451 TAGGTTGGCT
*
31955461 TAAGCATACAGAGTTCATTCCATGTC
1 TAAGCATACAGAGTTCATTCCATATC
**
31955487 TAAGCATATGGAGTTCATTCTCA-ATC
1 TAAGCATACAGAGTTCATTC-CATATC
31955513 TAAG
1 TAAG
31955517 ATCATACCAG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATTCCATATC
Found at i:31956166 original size:159 final size:159
Alignment explanation
Indices: 31955998--31956361 Score: 371
Period size: 158 Copynumber: 2.3 Consensus size: 159
31955988 CGTACGCCCA
* * * * * *
31955998 TTTCATGGGTCGGCTTAGGCATAAGGAGTTAATTCCATGTCTAAGCCCCAGCT-AGATCGAGGGT
1 TTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCACCAGATCAGACCAAGGGT
* * * * * *
31956062 TGTGGCAGCAGGACCGGCAGCACATAGAGGGGGATCAGGCC-GATCCCTGACTTTTGCATTATGC
66 TGCGGCAGCAGGACCGACAGCACACAG-GGGGGACCAGGCCAG-TCCCCGACTTATGCATTATGC
* * *
31956126 CTCTCCGGTCGGTTGAGCGCCCGCACGA-TCG
129 CTCTCCAGCCGGTTGAGCACCCGCAC-ATTCG
** * * *
31956157 TTTTGTGGGTTGACTTAGGCATACA-GAGTTCATTCCCA-GTCTAAG-ATCAGATCGGACCAAGG
1 TTTCATGGGTTGGCTTAGGCATA-AGGAGTTCATT-CCATGTCTAAGCACCAGATCAGACCAAGG
* * * * * *
31956219 GTTGCGGTAGCAGGATCGACAGCACGCAGGGGGGACCGGGCCAGTCCCCGGCTTATGCATTTTGC
64 GTTGCGGCAGCAGGACCGACAGCACACAGGGGGGACCAGGCCAGTCCCCGACTTATGCATTATGC
*
31956284 CTCTCCAGCCGGTTGAGCACCTGCACATTCG
129 CTCTCCAGCCGGTTGAGCACCCGCACATTCG
* * *
31956315 TTTCACGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTATAAGCA
1 TTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCA
31956362 TGTAGAGTTC
Statistics
Matches: 164, Mismatches: 33, Indels: 16
0.77 0.15 0.08
Matches are distributed among these distances:
157 4 0.02
158 91 0.55
159 65 0.40
160 4 0.02
ACGTcount: A:0.21, C:0.25, G:0.30, T:0.24
Consensus pattern (159 bp):
TTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCACCAGATCAGACCAAGGGT
TGCGGCAGCAGGACCGACAGCACACAGGGGGGACCAGGCCAGTCCCCGACTTATGCATTATGCCT
CTCCAGCCGGTTGAGCACCCGCACATTCG
Found at i:31956746 original size:26 final size:26
Alignment explanation
Indices: 31956710--31956763 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
31956700 TGGGTTGACT
31956710 TAGGCATACGGAGTTCATCCCCAGTC
1 TAGGCATACGGAGTTCATCCCCAGTC
* *
31956736 TAGGCATACGGAGTTCATTCCTAGTC
1 TAGGCATACGGAGTTCATCCCCAGTC
31956762 TA
1 TA
31956764 AGATCAGACC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (26 bp):
TAGGCATACGGAGTTCATCCCCAGTC
Found at i:31957005 original size:880 final size:867
Alignment explanation
Indices: 31955285--31957312 Score: 2227
Period size: 880 Copynumber: 2.3 Consensus size: 867
31955275 CCTGCCCGCC
* * ***
31955285 CATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCCA-ACCGGATCAAG
1 CATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGAATCAGACCGGATCAAG
* * * * * * * * * *
31955348 GGTTGTGGTAGCGGGACCGACAACACGCAGAAGGGGACTGGTCCGATCCTCGGCTTGCGTATTTT
65 GGTTGCGGTAGCAGGATCGACAGCACGCAG-GGGGGACCGGGCCG-TCCCCGGCTTGTGCATTTT
* ** * * * * * *
31955413 ACCTCTCCGGTTGGTTGAGCGCCTGCACGCTCGTTTCGTAGGTTGGCTTAAGCATACAGAGTTCA
128 GCCTCTCC-GCCGGTTGAGCACCTGCACACTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCA
* * *
31955478 TTCCATGTCTAAGCATATGGAGTTCATTCTCAATCTAAGATCATACCAGACCGAGGGTTGCGGTA
192 TTCCATGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGA-CGAGGGTTGCGGTA
* * * * *
31955543 GGAGGACTAGCAGTAGGATTGGTAGCACACAAAGGGGGACCGGGCCTATCCCTGGCTTACCCATT
256 GCAGGACCAGCAGCAGGATCGGTAGCACACAAAGGGGGACCGGGCCGATCCCTGGCTTACCCATT
* * * *
31955608 CTGCCTCTCCGGTCGACTGAGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCGTACGAAGTT
321 CTGCCTCTCCGATCGACTGAGCGCCCGTACACTCATTTCGTGGGTTGGCTTAGGCATACGAAGTT
*
31955673 CATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCAGGATCGGCAACACGCAGAGGA
386 CATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCAGGATCGACAACACGCAGAGGA
* * * *
31955738 GGACCGGGCTGATCCTCGACTTGCATATTATGCCTCTTCGATCGGCCTCTCGGCCTGCTGAATGC
451 GGACCGAGCTGATCCTCGACTTGCACATTATGCCTCTCCAATCGGCCTCTCGGCCTGCTGAATGC
* **
31955803 CCACATGCACGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATGTGGAG
516 CCACACGCACGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAG
* * **
31955868 TTCATTCCCAGTCTAAGATCGAATCAGACCGAGGGTTACGGCAGCTGGATCGATAGCACGCAGGA
581 TTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTACGACAGCAAGATCGATAGCACGCAGGA
* * * * * * * *
31955933 GGGATCGGGCCGATCCCTGCCTTGCGCATTCTGCCTTTCTGGCCGGCTGAGTGCCCGTACGCCCA
646 GGGACCGAGCCGATCCCTGCCTTGCACATTCTGCCTTTCCGACCGACTGAGTGCACGCACGCCCA
* * * * *
31955998 TTTCATGGGTCGGCTTAGGCATAAGGAGTTAATTCCATGTCTAAGCCCCAGCTAGATCGAGGGTT
711 CTTCATGCGTCGGCTTAGGCATAAGGAGTTAATTCCATGTCTAAGCCCCAGCGAGACCAAGGGTT
* * * * * **
31956063 GTGGCAGCAGGACCGGCAGCACATAGAGGGGGATCAGGCCGATCCCTGACTTTTGCATTATGCCT
776 GTGGCAGCAGGACCGACAGCACATAGAAGAGGATCAGGCCAATCCCAGACTTGCGCATTATGCCT
** * * **
31956128 CTCCGGTCGG-TTGAGCGCCCGCACGAT
841 CTCCGACCGGCTCGA-CACCCAAACGAT
* * * * *
31956155 CGTTTTGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAG-ATCAGATCGGACCAAGG
1 CATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGAATCAGACCGGATCAAGG
*
31956219 GTTGCGGTAGCAGGATCGACAGCACGCAGGGGGGACCGGGCCAGTCCCCGGCTTATGCATTTTGC
66 GTTGCGGTAGCAGGATCGACAGCACGCAGGGGGGACCGGGCC-GTCCCCGGCTTGTGCATTTTGC
* *
31956284 CTCTCCAGCCGGTTGAGCACCTGCACATTCGTTTCACGGGTTGGCTTAGGCATACGGAGTTCATT
130 CTCTCC-GCCGGTTGAGCACCTGCACACTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT
* * * * *
31956349 CCATGTATAAGCATGTAGAGTTCATTCCCAGTCTCAA-ATCAGATCGGATCGAGGGTTGCGGTAG
194 CCATGTCTAAGCATATGGAGTTCATTCCCAGTCT-AAGATCAGACCAGA-CGAGGGTTGCGGTAG
* ** * * * *
31956413 TAGGACCAG-AGCAGGATCGGTAGCATGCAAGGGGGGATCGGGCCGATCCCTGGCTTGCGCATTC
257 CAGGACCAGCAGCAGGATCGGTAGCACACAAAGGGGGACCGGGCCGATCCCTGGCTTACCCATTC
* *
31956477 TGCCTCTCCGATCGGCTGAGCGCCCGTACACTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTC
322 TGCCTCTCCGATCGACTGAGCGCCCGTACACTCATTTCGTGGGTTGGCTTAGGCATACGAAGTTC
* * *
31956542 ATTCCATGTCTAAGCTCCAGTCGGACCGAGGGTTTTGGCAGGAGGACCGACAGCGGGATCGACAG
387 ATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGC------A--G-CA---GGATCGACAA
* * *
31956607 CACGCAGAGGTGGACCGAGCTGATCCTGGGCTTGCACATTATGCCTCTCCAA-CTGGCCTCTCCG
440 CACGCAGAGGAGGACCGAGCTGATCCTCGACTTGCACATTATGCCTCTCCAATC-GGCCTCT-CG
* * *** * *
31956671 GTC-GACTGAGTGCTTGCACGC-TGATATT-ATGGGTTGACTTAGGCATACGGAGTTCATCCCCA
503 GCCTG-CTGAATGCCCACACGCACG-T-TTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCA
* * *
31956733 GTCTAGGCATACGGAGTTCATTCCTAGTCTAAGATC-AGACCAGACCGGGGGTTACGACAGCAAG
565 GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCAGACCGAGGGTTACGACAGCAAG
* * * * *
31956797 ATCGATGGCATGCAGG-GGGACCGAGTCGATACCC-GGCTTGCACATTCTGCCTTTCCGATCGAC
629 ATCGATAGCACGCAGGAGGGACCGAGCCGAT-CCCTGCCTTGCACATTCTGCCTTTCCGACCGAC
* * * * * * *
31956860 TGAGTGCACGCACGCCCGCTTCGTGCGTTGGCTTAGGCATAGGGAGTTCATTTCGTGTCTAAGCC
693 TGAGTGCACGCACGCCCACTTCATGCGTCGGCTTAGGCATAAGGAGTTAATTCCATGTCTAAGCC
* * * * *
31956925 CCAGCCGA-ACCAAGGGTTGTGGTAGCGGGACCGACAGCTCATAGAAGAGGA-CTGGGCTAATCC
758 CCAG-CGAGACCAAGGGTTGTGGCAGCAGGACCGACAGCACATAGAAGAGGATC-AGGCCAATCC
* *
31956988 TCAG-CTTGCGCATTATGCCTCTCTGACCGGCTCGACACCCAAACGCT
821 -CAGACTTGCGCATTATGCCTCTCCGACCGGCTCGACACCCAAACGAT
* * *
31957035 CATTTCGTGGGTTGACTTAAGCATACGGAGTTCATTCCCAGTCTAAGAAT-GGACCGGATCGAGG
1 CATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGAATCAGACCGGATCAAGG
* * * * * * * * * * *
31957099 GTTACGATAGTAGGATCGACCGCACGCAGGAGTGGATCGAGCCGGTCCCTGGTTTGTACATTCTG
66 GTTGCGGTAGCAGGATCGACAGCACGCAGG-GGGGACCGGGCC-GTCCCCGGCTTGTGCATTTTG
* * * *
31957164 CCTCTCCGACCGGCTGAGCACCCGCACACTCCTTTCATGGGTTGGCTTAGGCATACGGAGTTGAT
129 CCTCTCCG-CCGGTTGAGCACCTGCACACTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCAT
* * **
31957229 TCCATGTCTAAGCATATGGAGTTCATTCCCTGTCTAAGATCAGACCAGACTAAGGGTTATGGTAG
193 TCCATGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC-GAGGGTTGCGGTAG
*
31957294 CAGGACCAGTAGCAGGATC
257 CAGGACCAGCAGCAGGATC
31957313 AACAGCACGT
Statistics
Matches: 957, Mismatches: 168, Indels: 54
0.81 0.14 0.05
Matches are distributed among these distances:
868 142 0.15
869 141 0.15
870 76 0.08
871 3 0.00
874 1 0.00
876 1 0.00
877 2 0.00
879 2 0.00
880 309 0.32
881 269 0.28
882 11 0.01
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (867 bp):
CATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGAATCAGACCGGATCAAGG
GTTGCGGTAGCAGGATCGACAGCACGCAGGGGGGACCGGGCCGTCCCCGGCTTGTGCATTTTGCC
TCTCCGCCGGTTGAGCACCTGCACACTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCC
ATGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACGAGGGTTGCGGTAGCAGG
ACCAGCAGCAGGATCGGTAGCACACAAAGGGGGACCGGGCCGATCCCTGGCTTACCCATTCTGCC
TCTCCGATCGACTGAGCGCCCGTACACTCATTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTC
CATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCAGGATCGACAACACGCAGAGGAGGACC
GAGCTGATCCTCGACTTGCACATTATGCCTCTCCAATCGGCCTCTCGGCCTGCTGAATGCCCACA
CGCACGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCAT
TCCCAGTCTAAGATCGAACCAGACCGAGGGTTACGACAGCAAGATCGATAGCACGCAGGAGGGAC
CGAGCCGATCCCTGCCTTGCACATTCTGCCTTTCCGACCGACTGAGTGCACGCACGCCCACTTCA
TGCGTCGGCTTAGGCATAAGGAGTTAATTCCATGTCTAAGCCCCAGCGAGACCAAGGGTTGTGGC
AGCAGGACCGACAGCACATAGAAGAGGATCAGGCCAATCCCAGACTTGCGCATTATGCCTCTCCG
ACCGGCTCGACACCCAAACGAT
Found at i:31957250 original size:26 final size:26
Alignment explanation
Indices: 31957214--31957266 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
31957204 GTTGGCTTAG
*
31957214 GCATACGGAGTTGATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
* *
31957240 GCATATGGAGTTCATTCCCTGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
31957266 G
1 G
31957267 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:31957446 original size:26 final size:26
Alignment explanation
Indices: 31957409--31957461 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
31957399 GTTGACTTAG
*
31957409 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
31957435 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
31957461 G
1 G
31957462 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:31957983 original size:286 final size:284
Alignment explanation
Indices: 31957400--31957957 Score: 625
Period size: 286 Copynumber: 2.0 Consensus size: 284
31957390 ATTTTTTAGG
* * *
31957400 TTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATC
1 TTGACTTACGCATTCGGAGTGCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATC
* * * * ** *
31957465 GGATCGGATCGAGGGTTACGACAGAAGGATCGACAACACACAAGGGGATTGGGCCTATCCCCGGC
66 AGACCAGATCGAAGGTTACGACAGAAGGATCGACAACACACAAGGGGACCGGGCCAATCCCCGGC
* ** * ** *
31957530 TTACGCATTCTGCCTCTCCGGCCAGCTGAGTGCCCGCACGCTTGTTTTGTGGGTTGGCTTAGGCA
131 TTACGCATTCTACCTCTCCGGCCAGCTGAGCACCCGCACACCCGTTTCGTGGGTTGGCTTAGGCA
* ** * * **
31957595 TAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCGAGGGTTGTGGCAGTGAGACTGGTAGCA
196 TAGGGAATTCATTAAATGTCTAAGCCCCAGCCGAACCGAGGGTTGTGGCAGAGAGACCGACAGCA
**
31957660 CGTAGAGGGGGACCAAGTCAGTCC
261 CACAGAGGGGGACCAAGTCAGTCC
** * * *
31957684 CCGACTTACGCATTCTGGAGTGCATCCCCAGTCTAAGCTTATGGAGTTCATTCCCAGTCTAAGAT
1 TTGACTTACGCATTC-GGAGTGCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGAT
* * ** * * **
31957749 CAGACCAGATCGAAGGTTACGGCAGTAGGATCGGTAGCACACAGGGGGGACCGGGCCAATCCTTG
65 CAGACCAGATCGAAGGTTACGACAGAAGGATCGACAACACACA-AGGGGACCGGGCCAATCCCCG
* * * * * **
31957814 GCTTGCGTATTTTACCTTTTCGATC-GACTGAGCACCCGCACACCCGTTTCGTGGGTTGGCTTAG
129 GCTTACGCATTCTACCTCTCCGGCCAG-CTGAGCACCCGCACACCCGTTTCGTGGGTTGGCTTAG
*
31957878 GCATAGGGAATTCATTAAATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCAG-GACCGAC
193 GCATAGGGAATTCATTAAATGTCTAAGCCCCAGCCGAACCGAGGGTTGTGGCAG-AGAGACCGAC
*
31957942 AGCATACAGAGAGGGG
257 AGCACACAGAG-GGGG
31957958 TCGGGCTGAT
Statistics
Matches: 221, Mismatches: 48, Indels: 7
0.80 0.17 0.03
Matches are distributed among these distances:
284 11 0.05
285 80 0.36
286 125 0.57
287 5 0.02
ACGTcount: A:0.23, C:0.26, G:0.29, T:0.22
Consensus pattern (284 bp):
TTGACTTACGCATTCGGAGTGCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATC
AGACCAGATCGAAGGTTACGACAGAAGGATCGACAACACACAAGGGGACCGGGCCAATCCCCGGC
TTACGCATTCTACCTCTCCGGCCAGCTGAGCACCCGCACACCCGTTTCGTGGGTTGGCTTAGGCA
TAGGGAATTCATTAAATGTCTAAGCCCCAGCCGAACCGAGGGTTGTGGCAGAGAGACCGACAGCA
CACAGAGGGGGACCAAGTCAGTCC
Found at i:31958455 original size:159 final size:157
Alignment explanation
Indices: 31958046--31958508 Score: 484
Period size: 159 Copynumber: 2.9 Consensus size: 157
31958036 AATGGGCTGA
* *
31958046 ACGCTCGTTTCATGGGTTGACTTAGGCATATAGAGTTCATTCCCAGTCTAAGATCAAATCGGACT
1 ACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATC-AATCGGACC
* * * *
31958111 GAGGGTTGTGGCAGCAGGATCGACAGCACGTAGGAGGGATTGGGCCGATCCCCGGCTTGCGCATT
65 GAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATT
* *
31958176 CTGCCTC-TCTGG-CTGGCTGAGCACCCGC
130 CTGCCTCTTC-GGTC-GGCTCAACACCCGC
* * ** * * ** *
31958204 ACGCTCGTTTCGTGGGTTAACTTAGGCATAGGGAATTCATT-CCATGTCTCAGCCCCAATCAGAC
1 ACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCA-GTCTAAG-ATCAATCGGAC
* * * *
31958268 CGAGGGTTGTGGCAGCGGGACCGGCAGCACACAGAGGGGGATCGGGTCGATCCCCGGCTTGCGCA
64 CGAGGGTTGTGGCAGCAGGATCGACAGCACGCAG-GGGGGATCGGGTCGATCCCCGGCTTGCGCA
* ** *
31958333 TTATGCCTCTTCGGTCGGCTCAATGCCTGC
128 TTCTGCCTCTTCGGTCGGCTCAACACCCGC
* *
31958363 ACGCTCGTTTCATGGGTTGACTTATGCAAACAGAGTTCATTCCCAGTCTAAGATCAGA-CTGGAC
1 ACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCA-ATC-GGAC
** * * * * * *
31958427 CGAGGGTTACGACAGCAAGATCAACAGCACGCAGGGGGCGATCGGGTCAATCCCAGACTTGCGCA
64 CGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGG-GATCGGGTCGATCCCCGGCTTGCGCA
* *
31958492 TTCTACCTCTCCGGTCG
128 TTCTGCCTCTTCGGTCG
31958509 ACTGAGCGCC
Statistics
Matches: 246, Mismatches: 50, Indels: 17
0.79 0.16 0.05
Matches are distributed among these distances:
157 3 0.01
158 84 0.34
159 153 0.62
160 6 0.02
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (157 bp):
ACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAATCGGACCG
AGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTC
TGCCTCTTCGGTCGGCTCAACACCCGC
Found at i:31958851 original size:26 final size:26
Alignment explanation
Indices: 31958814--31958866 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
31958804 GTTGGCGTAG
* *
31958814 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
*
31958840 GCATACGAAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
31958866 G
1 G
31958867 GTCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:31959493 original size:353 final size:341
Alignment explanation
Indices: 31958786--31959695 Score: 894
Period size: 353 Copynumber: 2.7 Consensus size: 341
31958776 GTTGAGCGTT
* * * *
31958786 CGCACTCTCATTTCGTGGGTTGGCGTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGT
1 CGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCAT-TCCAGTCTAAGCATACGAAGT
* *
31958851 TCATTCCCAATCTAAGGTCGGACCGGACTGAGGGTTGCAGCAGCAGGATCGACAGCACGCAGGAG
65 TCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCAGGATCGACAGCACGCAGGAG
* * * *
31958916 GGATCGGGGCCATCCCTGACTTACGCATTCTGCCTCTCCGATCGGGTGAGCGCCCGCACGCCCAT
130 GGATCCGGGCCATCCCTGACTTACGCATTCTGCCTCTCCGACCGGCTGAGCACCCGCACGCCCAT
31958981 TTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACTGAGGGTTG
195 TTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACTGAGGGTTG
* * *
31959046 TGGTAGCGGGACCGACAGTACGCAGAGGGGATCGAGCCGATCCCAGGTTTACTAATTATGCCTCT
260 TGGTAGCGGGACCGACAGCACGCAGAGGGGATAGAGCCGATCCCAGGCTTACTAATTATGCCTCT
* *
31959111 CCGACCGGCTGAGCGCC
325 CCGACCGACTCAGCGCC
*
31959128 CGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAGGCATACGAAGT
1 CGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCA-GTCTAAGCATACGAAGT
*
31959193 TCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCTGCAGGACCAACAGCAGGATCGAC
65 TCATTCCCAATCTAAGATCGGACCGGACCGA-GG--GT---TGCA-G-----CAGCAGGATCGAC
* * * ** * *
31959258 AGCACGTAGG-GGGA-CCGGGCTGATCCCTGGCTTGTGGATTCTGCCTCTTCGACCGGCTGAGCA
118 AGCACGCAGGAGGGATCCGGGC-CATCCCTGACTTACGCATTCTGCCTCTCCGACCGGCTGAGCA
* ** ** *
31959321 CCCGCATGCCCATTTCGTGGGTTGGCTTA-GCATAGGGAGTTCATTCCATGTCTAATTCCTGGTC
182 CCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCC
* * *
31959385 G-ATTCGAGGGTTGTGGTAGCGGGACCGATAGCACGCAGAGGGGGACTAG-GCTGATCCCCA-GC
247 GAACT-GAGGGTTGTGGTAGCGGGACCGACAGCACGCAGA-GGGGA-TAGAGCCGAT-CCCAGGC
* * * * *
31959447 TTGCTGATTATGCCTCTCCGATCGACTCAGTGTC
308 TTACTAATTATGCCTCTCCGACCGACTCAGCGCC
* *
31959481 CGTATGCTCATTTCAT--G--GG--T-----T---GA---C-TT--AG-----GCATACGAAGTT
1 CGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAGTCTAAGCATACGAAGTT
* * * * * * *
31959521 CATTCCCCATCTAAGATCAGATCGGACTGAGGGTTGCGGTAGCAGGATCGACAGCACGCAGGGAA
66 CATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCAGGATCGACAGCACGCA-GGAG
* * * * * * * *
31959586 GGAT-CGGGTCGATCCCCGGCTTGCCCATTCTGCCTCTCCGACCGGTTGAGCACCCGCACGCTCG
130 GGATCCGGG-CCATCCCTGACTTACGCATTCTGCCTCTCCGACCGGCTGAGCACCCGCACGCCCA
* *
31959650 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
194 TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
31959696 ATACGGAGTT
Statistics
Matches: 483, Mismatches: 62, Indels: 70
0.79 0.10 0.11
Matches are distributed among these distances:
315 19 0.04
316 2 0.00
317 68 0.14
318 26 0.05
320 1 0.00
321 3 0.01
324 2 0.00
326 2 0.00
327 37 0.08
332 1 0.00
333 1 0.00
335 2 0.00
336 1 0.00
339 2 0.00
341 3 0.01
342 85 0.18
343 2 0.00
345 2 0.00
347 1 0.00
348 4 0.01
349 3 0.01
351 3 0.01
352 68 0.14
353 117 0.24
354 28 0.06
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (341 bp):
CGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAGTCTAAGCATACGAAGTT
CATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCAGGATCGACAGCACGCAGGAGG
GATCCGGGCCATCCCTGACTTACGCATTCTGCCTCTCCGACCGGCTGAGCACCCGCACGCCCATT
TCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACTGAGGGTTGT
GGTAGCGGGACCGACAGCACGCAGAGGGGATAGAGCCGATCCCAGGCTTACTAATTATGCCTCTC
CGACCGACTCAGCGCC
Found at i:31959693 original size:159 final size:158
Alignment explanation
Indices: 31959246--31959694 Score: 451
Period size: 159 Copynumber: 2.8 Consensus size: 158
31959236 CAGGACCAAC
* * * ** *
31959246 AGCAGGATCGACAGCACGTAGGGGGACCGGG-CTGATCCCTGGCTTGTGGATTCTGCCTCTTCGA
1 AGCAGGATCGACAGCACGCAGGGGGATCGGGTC-GATCCCCGGCTTGCCGATTCTGCCTCTCCGA
* * *
31959310 CCGGCTGAGCACCCGCATGCCCATTTCGTGGGTTGGCTTA-GCATAGGGAGTTCATTCCATGTCT
65 CCGGCTGAGCACCCGCATGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
* * * * *
31959374 AA-TTCCTGGTCGATTCGAGGGTTGTGGT
130 AAGATCCAGATCGACTCGAGGGTTGCGGT
* * * * * * * *
31959402 AGCGGGACCGATAGCACGCAGAGGGGGACTAGGCT-GATCCCCAGCTTGCTGATTATGCCTCTCC
1 AGCAGGATCGACAGCACGC--AGGGGGA-TCGGGTCGATCCCCGGCTTGCCGATTCTGCCTCTCC
* * * *** * * * ***
31959466 GATCGACTCAGTGTCCGTATGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCCAT
63 GACCGGCTGAGCACCCGCATGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
31959531 CTAAGAT-CAGATCGGACT-GAGGGTTGCGGT
128 CTAAGATCCAGATC-GACTCGAGGGTTGCGGT
*
31959561 AGCAGGATCGACAGCACGCAGGGAAGGATCGGGTCGATCCCCGGCTTGCCCATTCTGCCTCTCCG
1 AGCAGGATCGACAGCACGCAGGG--GGATCGGGTCGATCCCCGGCTTGCCGATTCTGCCTCTCCG
* * *
31959626 ACCGGTTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
64 ACCGGCTGAGCACCCGCATGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
31959691 TAAG
129 TAAG
31959695 CATACGGAGT
Statistics
Matches: 226, Mismatches: 57, Indels: 17
0.75 0.19 0.06
Matches are distributed among these distances:
156 15 0.07
157 4 0.02
158 66 0.29
159 137 0.61
160 4 0.02
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.25
Consensus pattern (158 bp):
AGCAGGATCGACAGCACGCAGGGGGATCGGGTCGATCCCCGGCTTGCCGATTCTGCCTCTCCGAC
CGGCTGAGCACCCGCATGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
AGATCCAGATCGACTCGAGGGTTGCGGT
Found at i:31959718 original size:26 final size:26
Alignment explanation
Indices: 31959668--31959720 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31959658 GTTGGCTTAG
*
31959668 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
31959694 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
31959720 G
1 G
31959721 ATTAGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:31960067 original size:26 final size:26
Alignment explanation
Indices: 31960038--31960088 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
31960028 TGACTTAGGT
31960038 ATACGGAGTTCATCCCCAGTCTAAGC
1 ATACGGAGTTCATCCCCAGTCTAAGC
**
31960064 ATACGGAGTTCATTTCCAGTCTAAG
1 ATACGGAGTTCATCCCCAGTCTAAG
31960089 ATTAGACTAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATCCCCAGTCTAAGC
Found at i:31960353 original size:159 final size:157
Alignment explanation
Indices: 31960062--31960561 Score: 497
Period size: 159 Copynumber: 3.2 Consensus size: 157
31960052 CCCAGTCTAA
* * ** * * *
31960062 GCATACGGAGTTCATTTCCAGTCTAAGATTAGACTAGACCGAGGGTTGCGACAGTAGGATCGGTA
1 GCATACGGAGTTCA-TTCCTGTCTAACACCAGACCAGACCGAGGGTTGTGGCAGTAGGATCGGTA
* ** *
31960127 GCATGCA-A-GGGGATCGGGCTGATCCCCGGTTTACGCATTCTACCTCTTCGGCCGGCTGAGGGC
65 GCATGCAGAGGGGGATCGGGCTGATCCTCGACTTACGCATTCTACCTCTTC-GCCGGCTGAGCGC
*
31960190 CTGCATGCCCGTTTCGTGGGTTGGCTTAG
129 CTGCATGCTCGTTTCGTGGGTTGGCTTAG
* * **
31960219 GCATAGGGAGTTCATTCCATGTCTCATCACCAG-CCAGACCGAGGGTTGTGGCAGCGGGATCGGT
1 GCATACGGAGTTCATTCC-TGTCT-AACACCAGACCAGACCGAGGGTTGTGGCAGTAGGATCGGT
* * * * * * *
31960283 AGCATGTAGAGGGGGATCGGGTTGATCCTCGACTTGCGCATTATGCCTCTTCGACCGGCTCAGCA
64 AGCATGCAGAGGGGGATCGGGCTGATCCTCGACTTACGCATTCTACCTCTTCG-CCGGCTGAGCG
* *
31960348 CCTGCACGCTCGTTTCGTGGGTTGAG-TTAT
128 CCTGCATGCTCGTTTCGTGGGTTG-GCTTAG
* * * * * * * * *
31960378 GCAAACGGAGTTCATTCCTCGTCTAAGATCGGATCGGACTGAGGGTTGTGGCAGTAGGATTGATA
1 GCATACGGAGTTCATTCCT-GTCTAACACCAGACCAGACCGAGGGTTGTGGCAGTAGGATCGGTA
* * * * * *
31960443 GCACGCAG-GGGGGATCGGGCCGATCCTTGACTTACGCATTCTACCTCTCCCGCTGGTTGAGCGC
65 GCATGCAGAGGGGGATCGGGCTGATCCTCGACTTACGCATTCTACCTCT-TCGCCGGCTGAGCGC
* *
31960507 CTGCATGCTCATTTCATGGGTTGGCTTAG
129 CTGCATGCTCGTTTCGTGGGTTGGCTTAG
*
31960536 GCATATGGAGTTCATTCCGTGTCTAA
1 GCATACGGAGTTCATTCC-TGTCTAA
31960562 GGATACGGAG
Statistics
Matches: 275, Mismatches: 57, Indels: 21
0.78 0.16 0.06
Matches are distributed among these distances:
156 4 0.01
157 51 0.19
158 98 0.36
159 121 0.44
160 1 0.00
ACGTcount: A:0.18, C:0.24, G:0.31, T:0.26
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCTGTCTAACACCAGACCAGACCGAGGGTTGTGGCAGTAGGATCGGTAG
CATGCAGAGGGGGATCGGGCTGATCCTCGACTTACGCATTCTACCTCTTCGCCGGCTGAGCGCCT
GCATGCTCGTTTCGTGGGTTGGCTTAG
Found at i:31966995 original size:26 final size:26
Alignment explanation
Indices: 31966958--31967010 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
31966948 GTTGACTTAG
31966958 GCATACAGAGTTCATCTCC-AGTCTAA
1 GCATACAGAGTTCAT-TCCAAGTCTAA
31966984 GCATAC-GAAGTTCATTCCAAGTCTAA
1 GCATACAG-AGTTCATTCCAAGTCTAA
31967010 G
1 G
31967011 ATCGAACCAG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 4 0.16
26 21 0.84
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCAAGTCTAA
Found at i:31967871 original size:26 final size:26
Alignment explanation
Indices: 31967841--31967893 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
31967831 GTTGACTTAG
31967841 GCATAC-GAAGTTCATCCCCAATCTAA
1 GCATACAG-AGTTCATCCCCAATCTAA
* *
31967867 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
31967893 G
1 G
31967894 ATTGGATCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:31968156 original size:159 final size:158
Alignment explanation
Indices: 31967968--31968356 Score: 442
Period size: 159 Copynumber: 2.4 Consensus size: 158
31967958 CTAGCGTGCG
* * *
31967968 CATTCTGCCTCTCTGGCCGGCTGAGCGCCCTGTACGCCCGTTTCGTGGGTTGGCTTAGGCATAAG
1 CATTCTGCCTCTCCGACC-GCTGAGCGCCC-GCACGCCCGTTTCGTGGGTTGGCTTAGGCATAAG
*** * *
31968033 GAGTTCAATCCATGTCTAAGCCCCAGTTGGACTAAGGGTTGTGGCAGCGAGA-TCGACAGAACAT
64 GAGTTCAATCCATGTCTAAGCCCCAGCCAGACCAAGGGTTGTGGCAACGAGACT-GACAGAACAT
*
31968097 A-AGGGGGATCGGGCTGATCCCCGACTT-TCA
128 AGAGGGGGATCGGGCTGAACCCCGACTTGT-A
* * * * * *
31968127 CATTCTCCCTCTCCGACCAGCTGAGCGCCCGCGCACCCATTTCGTGGATTGGCTTAGGCATAGGG
1 CATTCTGCCTCTCCGACC-GCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAAGG
* ** * *
31968192 AGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAGGGTTGTGGCAACGAGACTGGTAGCACGTAG
65 AGTTCAATCCATGTCTAAGCCCCAGCCAGACCAAGGGTTGTGGCAACGAGACTGACAGAACATAG
*
31968257 AGGGGGATCGGGCTGAACCCCGACTTGTG
130 AGGGGGATCGGGCTGAACCCCGACTTGTA
* * * * * * * *
31968286 CATTGTGCCTCTTCGACCGACTCAGCGCCCGCATGCTCGTTTGGTGGGTTGACTTAGGCATATGG
1 CATTCTGCCTCTCCGACCG-CTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAAGG
31968351 AGTTCA
65 AGTTCA
31968357 TCCCCAGTCT
Statistics
Matches: 191, Mismatches: 35, Indels: 8
0.82 0.15 0.03
Matches are distributed among these distances:
158 82 0.43
159 108 0.57
160 1 0.01
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.24
Consensus pattern (158 bp):
CATTCTGCCTCTCCGACCGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAAGGA
GTTCAATCCATGTCTAAGCCCCAGCCAGACCAAGGGTTGTGGCAACGAGACTGACAGAACATAGA
GGGGGATCGGGCTGAACCCCGACTTGTA
Found at i:31970615 original size:26 final size:26
Alignment explanation
Indices: 31970577--31970629 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
31970567 GGCTTAAAAT
* *
31970577 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
31970603 CTTAGACAT-GGAATAAACTCCGTATG
1 CTTAGAC-TGGGAATAAACTCCGTATG
31970629 C
1 C
31970630 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:31971496 original size:26 final size:26
Alignment explanation
Indices: 31971458--31971509 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
31971448 CCGGTCCGAT
31971458 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCTGTATG
31971484 CTTAGAC-ATGGAATGAACTCTGTATG
1 CTTAGACTA-GGAATGAACTCTGTATG
31971510 TCTAAGCCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.31, C:0.15, G:0.23, T:0.31
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCTGTATG
Found at i:31971911 original size:159 final size:158
Alignment explanation
Indices: 31971483--31971911 Score: 441
Period size: 159 Copynumber: 2.7 Consensus size: 158
31971473 AACTCTGTAT
* * * * *
31971483 GCTTAGACATGGAATGAACTCTGTATGTCTAAGCCAACCCATGAAACAAGCGTACGGGCGATAAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTAAG
* * * * * *
31971548 GCGGTCGGAGAGGCAGAATGCGCATGTCGGGGATCGACCCGATCCCCCCCAACGTGCTATCGATC
66 CCGGTCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCAG-TCCCCCCCAACGTGCTACCGATC
* *
31971613 CTGCTACCACAACCATCGGTCTGGTCTGA
130 CCGCTACCACAACCATCAGTCTGGTCTGA
* * * * * * * *
31971642 TCTTAGAC-TGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAATGAACGTGCAGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTAA
* * * * * **
31971706 GCCGATCGGAA-AGGCATAATGCGCAAGCCAGGGATCGACTCGGTCCCCCTCTGCGTGCTACCGA
65 GCCGGTC-GAAGAGGCAGAATGCGCAAGCCGGGGATCGAC-CAGTCCCCCCCAACGTGCTACCGA
* * * *
31971770 TCCCGCTGCCACAACCCTCAGTTTGG-CTGGG
128 TCCCGCTACCACAACCATCAGTCTGGTCT-GA
* * * * * *
31971801 GCTTAGACATGGAATGAACTCCCTATACCTAAGCCAACCCACGAAACGGGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTAAG
31971866 CCGGTCGAAGAGGCAGAATGCGCAAGCCGGGGATCGATCCAGTCCC
66 CCGGTCGAAGAGGCAGAATGCGCAAGCCGGGGATCGA-CCAGTCCC
31971912 TCCTACGTGT
Statistics
Matches: 215, Mismatches: 48, Indels: 14
0.78 0.17 0.05
Matches are distributed among these distances:
158 6 0.03
159 203 0.94
160 6 0.03
ACGTcount: A:0.25, C:0.29, G:0.28, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTAAG
CCGGTCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCAGTCCCCCCCAACGTGCTACCGATCC
CGCTACCACAACCATCAGTCTGGTCTGA
Found at i:31972729 original size:26 final size:26
Alignment explanation
Indices: 31972678--31972730 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
31972668 CACTCAAAAT
* *
31972678 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
31972704 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
31972730 C
1 C
31972731 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:31973059 original size:159 final size:158
Alignment explanation
Indices: 31972703--31973118 Score: 401
Period size: 159 Copynumber: 2.6 Consensus size: 158
31972693 AACTTCGTAT
* ** *
31972703 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAA
* * *
31972768 CCAGTCGAAGAGACAGAATGCACAAGCTGAGGATCGGCCCGGTCCCCCCTACGTGCTGTCGATCC
66 CCAGTCGAAGAGACAGAATGCACAAGCTGAGGATCGACCCAGTCCCCCCTACGTGCTGCCGATCC
* *
31972833 TGCTACCGCAATCCTCAGTTCGGTCTGA
131 CGCTACCACAATCCTCAGTTCGGTCTGA
* * * * * *
31972861 TCTTAGACCA-GGAATGAACTCCGTATGCATAAGTCAACCCATGAAATGAGCGTGCGGGCACTGA
1 GCTTAGA-CATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCA
* * * * * * *
31972925 ACC-GGCTGGAGAGGCATAATGCAGAAGCTGGGGATCGACCCAGTCCCCCTCTGCGTGCTGCC-A
65 ACCAGTC-GAAGAGACAGAATGCACAAGCTGAGGATCGACCCAGTCCCCC-CTACGTGCTGCCGA
* * * *
31972988 GTCCCGCTGCCACAA-CACTCGGTTTGG-CTGGG
128 -TCCCGCTACCACAATC-CTCAGTTCGGTCT-GA
* * * ** **
31973020 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGTGGGTGCTCGG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAA
* * * * *
31973085 CCAGTTGGAGAGGCAGAATGCGCAAGCCGAGGAT
66 CCAGTCGAAGAGACAGAATGCACAAGCTGAGGAT
31973119 TAGTCCGATC
Statistics
Matches: 205, Mismatches: 45, Indels: 15
0.77 0.17 0.06
Matches are distributed among these distances:
157 2 0.01
158 95 0.46
159 107 0.52
160 1 0.00
ACGTcount: A:0.25, C:0.29, G:0.29, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAA
CCAGTCGAAGAGACAGAATGCACAAGCTGAGGATCGACCCAGTCCCCCCTACGTGCTGCCGATCC
CGCTACCACAATCCTCAGTTCGGTCTGA
Found at i:31973131 original size:159 final size:157
Alignment explanation
Indices: 31972703--31973198 Score: 457
Period size: 158 Copynumber: 3.1 Consensus size: 157
31972693 AACTTCGTAT
* *
31972703 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCGG
* * * * ** * * *
31972768 CCAGTCGAAGAGACAGAATGCACAAGCTGAGGATCGGCCCGGTCCCCCCTACGTGCTGTC-GATC
66 CCAGTTGGAGAGGCAGAATGCGCAAGCTGAGGATTAGACCGATCCCCCCTGCGTGCTGTCAG-TC
* * *
31972832 CTGCTACCGCAATCCTCAGTTCGGTCTGA
130 CAGCTGCCGCAA-CCTCGGTTCGGTCTGA
* * * * * **
31972861 TCTTAGACCA-GGAATGAACTCCGTATGCATAAGTCAACCCATGAAATGAGCGTGCGGGCACT-G
1 GCTTAGA-CATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCG
* * * * * * * *
31972924 AACCGGCTGGAGAGGCATAATGCAG-AAGCTGGGGA-TCGACCCAGTCCCCCTCTGCGTGCTGCC
65 -GCCAGTTGGAGAGGCAGAATGC-GCAAGCTGAGGATTAGACCGA-TCCCCC-CTGCGTGCTGTC
* * * *
31972987 AGTCCCGCTGCCACAACACTCGGTTTGG-CTGGG
126 AGTCCAGCTGCCGCAAC-CTCGGTTCGGTCT-GA
* * *
31973020 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGTGGGTGCTCGG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCGG
* * *
31973085 CCAGTTGGAGAGGCAGAATGCGCAAGCCGAGGATTAGTCCGATCCCCCCTGCGTGCTGTCAATCC
66 CCAGTTGGAGAGGCAGAATGCGCAAGCTGAGGATTAGACCGATCCCCCCTGCGTGCTGTCAGTCC
* *
31973150 AGCTGCCGCAACCCTCGGTCCGGTCTAA
131 AGCTGCCGCAA-CCTCGGTTCGGTCTGA
* *
31973178 TCTTACAC-TGGGAATGAACTC
1 GCTTAGACAT-GGAATGAACTC
31973199 TGTATGCTTA
Statistics
Matches: 264, Mismatches: 59, Indels: 30
0.75 0.17 0.08
Matches are distributed among these distances:
157 4 0.02
158 136 0.52
159 117 0.44
160 7 0.03
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCGG
CCAGTTGGAGAGGCAGAATGCGCAAGCTGAGGATTAGACCGATCCCCCCTGCGTGCTGTCAGTCC
AGCTGCCGCAACCTCGGTTCGGTCTGA
Found at i:31974820 original size:26 final size:26
Alignment explanation
Indices: 31974782--31974834 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
31974772 GGCTCAAAAT
31974782 CTTAGACTAGGAATGAAC-TCTGTATG
1 CTTAGACTAGGAATGAACTTC-GTATG
31974808 CTTAGAC-ATGGAATGAACTTCGTATG
1 CTTAGACTA-GGAATGAACTTCGTATG
31974834 C
1 C
31974835 GTAAGCAAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 1 0.04
26 22 0.88
27 2 0.08
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTTCGTATG
Found at i:31975016 original size:26 final size:26
Alignment explanation
Indices: 31974965--31975017 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
31974955 CTGATCCAAT
* *
31974965 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
31974991 CTTATACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
31975017 C
1 C
31975018 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:31975329 original size:158 final size:158
Alignment explanation
Indices: 31975003--31975436 Score: 518
Period size: 158 Copynumber: 2.7 Consensus size: 158
31974993 TATACTGGGG
* * * * * *
31975003 ATGAACTCCATATGCCTAAGTCAACCCACCAAA-TGAGCGTGCGGGTGCTGAGCCGATC-GAAGA
1 ATGAACTCCCTATGCCTAAGCCAACCCACGAAACAG-GCGTGCGGGTGCTCAGCCGGTCAG-AGA
* * * * * * *
31975066 GGCATAATGCACAAGTCAGGGATGGGCCCGATCCTCCTCTGCGTGCTGTCGGTCCCGCTGCCACA
64 GGCAGAATACGCAAGCCAGGGAT-CGCCCGATCCTCCTCTACGTGCTGTCGATCCCGCTGCCACA
31975131 ACCCTCGGTCTAGCTGGGGCTTAAACATGGA
128 ACCCTCGGTCTAGCTGGGGCTTAAACATGGA
* *
31975162 ATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGCGTGTGGGTGCTCAGCTGGTCAGAGAGG
1 ATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGCGTGCGGGTGCTCAGCCGGTCAGAGAGG
* * *
31975227 CAGAATACGCAAGCCGGGGATCAGCCCGATCC-CCTCTACGTTCTGTCGATCTCGCTGCCACAAC
66 CAGAATACGCAAGCCAGGGATC-GCCCGATCCTCCTCTACGTGCTGTCGATCCCGCTGCCACAAC
* *
31975291 CCTTGGTCT-GACTGGGGCTTAGACATGGA
130 CCTCGGTCTAG-CTGGGGCTTAAACATGGA
* * * * * ** *
31975320 ATGAACTCCCTATGCCTAAGCCAACTCACGAAACGGGCATACAGGCACTCAGCCGGCCAGAGAGG
1 ATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGCGTGCGGGTGCTCAGCCGGTCAGAGAGG
*
31975385 TAGAATACGCAAGCCAGGGATCGACCCGATCCTCC-CTACGTGCTGTCGATCC
66 CAGAATACGCAAGCCAGGGATCG-CCCGATCCTCCTCTACGTGCTGTCGATCC
31975437 TACTGTCGCA
Statistics
Matches: 235, Mismatches: 34, Indels: 13
0.83 0.12 0.05
Matches are distributed among these distances:
157 2 0.01
158 151 0.64
159 80 0.34
160 2 0.01
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.18
Consensus pattern (158 bp):
ATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGCGTGCGGGTGCTCAGCCGGTCAGAGAGG
CAGAATACGCAAGCCAGGGATCGCCCGATCCTCCTCTACGTGCTGTCGATCCCGCTGCCACAACC
CTCGGTCTAGCTGGGGCTTAAACATGGA
Found at i:31975470 original size:158 final size:158
Alignment explanation
Indices: 31975063--31975492 Score: 395
Period size: 158 Copynumber: 2.7 Consensus size: 158
31975053 AGCCGATCGA
* * * * ** * * * *
31975063 AGAGGCATAATGCACAAGTCAGGGATGGGCCCGATCCTCCTCTGCGTGCTGTCGGTCCCGCTGCC
1 AGAGGCAGAATACGCAAGCCAGGGATCAGCCCGATCC-CCTCTACGTGCTGTCGATCTCACTGCC
* * *** *
31975128 ACAACCCTCGGT-CTAGCTGGGGCTTAAACATGGAATGAACTCCCTATGCCTAAGCCAACCCACG
65 ACAACCCTCAGTCCGA-CTCAAGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACG
* *** ** * *
31975192 AAACAGGCGTGTGGGTGCTCAGCTGGTCAG
129 AAACAGGCATACAGGCACTCAGCCGGCCAG
* * *
31975222 AGAGGCAGAATACGCAAGCCGGGGATCAGCCCGATCCCCTCTACGTTCTGTCGATCTCGCTGCCA
1 AGAGGCAGAATACGCAAGCCAGGGATCAGCCCGATCCCCTCTACGTGCTGTCGATCTCACTGCCA
** * *** *
31975287 CAACCCTTGGTCTGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACTCACGAA
66 CAACCCTCAGTCCGACTCAAGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAA
*
31975352 ACGGGCATACAGGCACTCAGCCGGCCAG
131 ACAGGCATACAGGCACTCAGCCGGCCAG
*
31975380 AGAGGTAGAATACGCAAGCCAGGGATC-GACCCGATCCTCC-CTACGTGCTGTCGATC-CTACTG
1 AGAGGCAGAATACGCAAGCCAGGGATCAG-CCCGATCC-CCTCTACGTGCTGTCGATCTC-ACTG
* * * *
31975442 TCGCAACCCTCAGTCCGA-TCCAATCTTAGAC-TGGAAATGAACTCCGTATGC
63 CCACAACCCTCAGTCCGACT-CAAGCTTAGACATGG-AATGAACTCCCTATGC
31975493 TTAGATTGGG
Statistics
Matches: 226, Mismatches: 39, Indels: 13
0.81 0.14 0.05
Matches are distributed among these distances:
157 6 0.03
158 187 0.83
159 33 0.15
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (158 bp):
AGAGGCAGAATACGCAAGCCAGGGATCAGCCCGATCCCCTCTACGTGCTGTCGATCTCACTGCCA
CAACCCTCAGTCCGACTCAAGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAA
ACAGGCATACAGGCACTCAGCCGGCCAG
Found at i:31975862 original size:26 final size:26
Alignment explanation
Indices: 31975833--31975883 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
31975823 CGGTTCGATC
31975833 TTAGAC-TGGGAATGAACTCCGTATGG
1 TTAGACAT-GGAATGAACTCCGTATGG
*
31975859 TTAGACATGGAATGAACTCTGTATG
1 TTAGACATGGAATGAACTCCGTATG
31975884 CCTAAGCCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.29
Consensus pattern (26 bp):
TTAGACATGGAATGAACTCCGTATGG
Found at i:31976370 original size:26 final size:26
Alignment explanation
Indices: 31976334--31976386 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31976324 CTGGTCTGAT
31976334 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
*
31976360 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
31976386 C
1 C
31976387 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:31983294 original size:159 final size:159
Alignment explanation
Indices: 31983000--31983501 Score: 451
Period size: 159 Copynumber: 3.2 Consensus size: 159
31982990 ACTCCGTATG
* **
31983000 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGAGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACAAAACGAGCGTACGAGCGCTCAGC
* * * * * * * * * **
31983065 TGGTAGGAGAGGTAGAATGTGTAAGTCGGGGATCGACCCGATCCCCCTCTACGTGCTGTCGATCC
66 CGGCAGAAGAGGCAGAATGCGCAAGTCGAGGATCAACCCGATCCCCCTCTACATGCTACCGATCC
*
31983130 TGCTGCCACAACCCTCGGTCCGATCCAAT
131 CGCTGCCACAACCCTCGGTCCGATCCAAT
* * * * * *
31983159 CTTAGAC-TAGGAATGAACTTCGTTTGCATAAGTCAACCCACAAAATGAGCGTACGAGCGTTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCATAAGCCAACCCACAAAACGAGCGTACGAGCGCTCAG
* *
31983223 CCGGCCGAAGAGGCATAATGCGCAAGTCGAGGATCAACCCGATCCCCCTCTACATGCTACCGATC
65 CCGGCAGAAGAGGCAGAATGCGCAAGTCGAGGATCAACCCGATCCCCCTCTACATGCTACCGATC
* * ***
31983288 CCGCTGCCACAACCCTCGGTCTG-GCTGGT
130 CCGCTGCCACAACCCTCGGTCCGATCCAAT
* * * * * * * * *
31983317 GATGAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGC-AGGCCCTCA
1 -CTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACAAAACGAGCGTACGA-GCGCTCA
* * * ** * * *
31983381 GCCGGCCGAAGAGGTAGAATGCGTAAACCGGGGATCAGCCCGAT-CCCCT-TGCATGCTACCGAT
64 GCCGGCAGAAGAGGCAGAATGCGCAAGTCGAGGATCAACCCGATCCCCCTCTACATGCTACCGAT
** * * * *
31983444 CCTACTGTCGCAACCCTCGGT-CTAGTCTAAT
129 CCCGCTGCCACAACCCTCGGTCCGA-TCCAAT
31983475 CTTAGAC-TGGGAATGAACTCCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
31983502 TTAGACTGGG
Statistics
Matches: 273, Mismatches: 63, Indels: 16
0.78 0.18 0.05
Matches are distributed among these distances:
156 1 0.00
157 52 0.19
158 12 0.04
159 207 0.76
160 1 0.00
ACGTcount: A:0.25, C:0.30, G:0.25, T:0.20
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACAAAACGAGCGTACGAGCGCTCAGC
CGGCAGAAGAGGCAGAATGCGCAAGTCGAGGATCAACCCGATCCCCCTCTACATGCTACCGATCC
CGCTGCCACAACCCTCGGTCCGATCCAAT
Found at i:31983511 original size:26 final size:26
Alignment explanation
Indices: 31983475--31983525 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
31983465 CTAGTCTAAT
31983475 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
31983501 CTTAGACTGGGGATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
31983526 ACCTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:31983901 original size:184 final size:184
Alignment explanation
Indices: 31983684--31984053 Score: 460
Period size: 184 Copynumber: 2.0 Consensus size: 184
31983674 CCGGTTTGGG
* * *
31983684 GCTTAGACATGGAATGAGCTCCGTATGCCTAAGCCAACCTATGAAATGAGCGTGT-GGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGT-TCGGGCGCTCA
* * * * * * *
31983748 ACCGGCCGGAGAGGCAGAATACGTAAGTCGGGGATC-AGCCCGGTCC-CCTCTGCTTGCTGTCTA
65 ACCGGCCGGAGAGGCAGAATACGCAAGCCGGGGATCGA-CCCGATCCTCCCCTACGTGCTGTCAA
** * *
31983811 TCCTGCTGCCACAACCTTTTGTCCAG-TCTGATCTTAGATTGGGAATGAACTCCGTAT
129 TCCTGCTGCCACAACC-TCAGT-CAGATCCGATCTTAGATGGGGAATGAACTCCGTAT
* * *
31983868 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTTCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTTCGGGCGCTCAA
* * **
31983933 TCGGTCGGAGAGGCAGAATGGGCAAGCCGGGGATCGACCCGATCCTCCCCTACGTGCTGTCAATC
66 CCGGCCGGAGAGGCAGAATACGCAAGCCGGGGATCGACCCGATCCTCCCCTACGTGCTGTCAATC
* * *
31983998 CTGCTGCCGCAACCTCAGTCTGATCCGATCTTAGATGGGGAATGAACTTCGTAT
131 CTGCTGCCACAACCTCAGTCAGATCCGATCTTAGATGGGGAATGAACTCCGTAT
31984052 GC
1 GC
31984054 CTAAGTCAAC
Statistics
Matches: 158, Mismatches: 24, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
183 3 0.02
184 126 0.80
185 29 0.18
ACGTcount: A:0.23, C:0.27, G:0.27, T:0.23
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTTCGGGCGCTCAA
CCGGCCGGAGAGGCAGAATACGCAAGCCGGGGATCGACCCGATCCTCCCCTACGTGCTGTCAATC
CTGCTGCCACAACCTCAGTCAGATCCGATCTTAGATGGGGAATGAACTCCGTAT
Found at i:31984682 original size:158 final size:158
Alignment explanation
Indices: 31984385--31984688 Score: 421
Period size: 158 Copynumber: 1.9 Consensus size: 158
31984375 TCCGTATGCC
* *
31984385 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAGCCG
1 TAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCACCCG
* * * * * *
31984450 GCCGGAGAGGCATAATTCGTAAGCCTGGGATCGGCTCGATCCCCCCTGCGTACTGCCGGTCCCGC
66 ACCGGAGAGGCAGAATGCGTAAGCCAGGGATCGGCCCGATCCCCCCTGCGTACTGCCGATCCCGC
31984515 TACCACAACCCTCAGTTCGGCTGGGGCT
131 TACCACAACCCTCAGTTCGGCTGGGGCT
* *
31984543 TAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTCACCCG
1 TAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCACCCG
* * * * * *
31984608 ATCGGAGAGGCAGAATGCGTAAGTCAGGGAT-GGCCCCGATCCCTCCTGCGTGCTGTCGATCCTG
66 ACCGGAGAGGCAGAATGCGTAAGCCAGGGATCGG-CCCGATCCCCCCTGCGTACTGCCGATCCCG
* **
31984672 CTGCTGCAACCCTCAGT
130 CTACCACAACCCTCAGT
31984689 CCGGTCCGAC
Statistics
Matches: 126, Mismatches: 19, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
157 2 0.02
158 124 0.98
ACGTcount: A:0.22, C:0.32, G:0.28, T:0.18
Consensus pattern (158 bp):
TAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCACCCG
ACCGGAGAGGCAGAATGCGTAAGCCAGGGATCGGCCCGATCCCCCCTGCGTACTGCCGATCCCGC
TACCACAACCCTCAGTTCGGCTGGGGCT
Found at i:31984725 original size:158 final size:158
Alignment explanation
Indices: 31984385--31984725 Score: 409
Period size: 158 Copynumber: 2.2 Consensus size: 158
31984375 TCCGTATGCC
*
31984385 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAGCCG
1 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCACCCG
* * * * * *
31984450 GCCGGAGAGGCATAATTCGTAAGCCTGGGATCGGCTCGATCCCCCCTGCGTACTGCCGGTCCCGC
66 ACCGGAGAGGCAGAATGCGTAAGCCAGGGATCGGCCCGATCCCCCCTGCGTACTGCCGATCCCGC
* * **
31984515 TACCACAACCCTCAGTTCGGCTGGGGCT
131 TACCACAACCCTCAGTCCGGCTCGACCT
* * *
31984543 TAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTCACCCG
1 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCACCCG
* * * * * *
31984608 ATCGGAGAGGCAGAATGCGTAAGTCAGGGAT-GGCCCCGATCCCTCCTGCGTGCTGTCGATCCTG
66 ACCGGAGAGGCAGAATGCGTAAGCCAGGGATCGG-CCCGATCCCCCCTGCGTACTGCCGATCCCG
* **
31984672 CTGCTGCAACCCTCAGTCCGG-TCCGACCT
130 CTACCACAACCCTCAGTCCGGCT-CGACCT
* *
31984701 TAGA-TTGGGAATGAACTTCGTATGC
1 TAGACAT-GGAATGAACTCCGTATGC
31984726 TTAGACTGGG
Statistics
Matches: 154, Mismatches: 26, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
157 4 0.03
158 150 0.97
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.19
Consensus pattern (158 bp):
TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCACCCG
ACCGGAGAGGCAGAATGCGTAAGCCAGGGATCGGCCCGATCCCCCCTGCGTACTGCCGATCCCGC
TACCACAACCCTCAGTCCGGCTCGACCT
Found at i:31984750 original size:26 final size:26
Alignment explanation
Indices: 31984699--31984751 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
31984689 CCGGTCCGAC
* * *
31984699 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
31984725 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
31984751 C
1 C
31984752 CTATGCCAAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:31985508 original size:158 final size:159
Alignment explanation
Indices: 31985150--31985519 Score: 370
Period size: 158 Copynumber: 2.3 Consensus size: 159
31985140 AATCAGGTCC
* * * * *
31985150 GATCTTAGACTGGGAATGAACTCCGTTTG-CATAAGTCAACCCACAAAATGAGTGTGCGGGCGCT
1 GATCTTAGAATGGGAATGAACTCCGTATGCCA-AAGTCAACCCACGAAACGAGCGTGCGGGCGCT
* * * * * * ***
31985214 GAGCCGACTGAAGAGGCATAATGCGCATGTCGGGGATCGACCCGATCCCCCTCTGTGTGCTGCCG
65 CAGCCGACAGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCAATCCCCCTCTACCTGCTGCCG
* * *
31985279 GTCCCGCTGCCACAACCCTCGGTCTGATTG
130 ATCCCGCTGCCACAACCCTCAGTCCGATTG
** * * * * * *
31985309 GGGCTGAGACAT-GGAATGAATTCCCTATGCCTAAGTTAACCCACGAAACGAGCGTGCGGGTGCT
1 GATCTTAGA-ATGGGAATGAACTCCGTATGCCAAAGTCAACCCACGAAACGAGCGTGCGGGCGCT
* * * * *
31985373 CAGCCAGCCAG-AGAGGCAGAATGCGCAAGCCGTGGATTGGCCCAAT-CCCCTCTACCTGCTGTC
65 CAGCC-GACAGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCAATCCCCCTCTACCTGCTGCC
* * *
31985436 GATCCTGCTGCCACAACCTTCAGTCCGATTT
129 GATCCCGCTGCCACAACCCTCAGTCCGATTG
* *
31985467 GATCTTAGATTGGGAATGAACTCTGTATGCCAAAGTCAACCCACGAAACGAGC
1 GATCTTAGAATGGGAATGAACTCCGTATGCCAAAGTCAACCCACGAAACGAGC
31985520 ATTCGACCCG
Statistics
Matches: 165, Mismatches: 42, Indels: 9
0.76 0.19 0.04
Matches are distributed among these distances:
157 1 0.01
158 80 0.48
159 79 0.48
160 5 0.03
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (159 bp):
GATCTTAGAATGGGAATGAACTCCGTATGCCAAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC
AGCCGACAGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCAATCCCCCTCTACCTGCTGCCGA
TCCCGCTGCCACAACCCTCAGTCCGATTG
Found at i:31986365 original size:26 final size:26
Alignment explanation
Indices: 31986313--31986365 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
31986303 CCAGCCTGAT
* *
31986313 CTTAGACAGGGAATGAACTCTGCATG
1 CTTAGACAGGGAATAAACTCCGCATG
* *
31986339 CTTAGACATGGAATAAACTCCGTATG
1 CTTAGACAGGGAATAAACTCCGCATG
31986365 C
1 C
31986366 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.21, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACAGGGAATAAACTCCGCATG
Found at i:31987566 original size:159 final size:158
Alignment explanation
Indices: 31987218--31987575 Score: 373
Period size: 158 Copynumber: 2.3 Consensus size: 158
31987208 AACTCTACAT
* ** *
31987218 GCTTATACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAATGTGCAGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAATGTGCAGGCGCTCAA
* * * * * *
31987283 CCGGCTGGAGAGGCAGAATGCATAAGCCGGGGACTGGCCCGGTCCCCCCTGCGTGCTGTCGATCC
66 CCGGCCGGAGAGGCAGAATGCAAAAGCCAGGGACTGGCCCGATCCCCCCTACGTGCTGCCGATCC
* ** * *
31987348 TGCTGCTGCAACCCTTGGTCCGGTCTGA
131 CGCTGCCACAACCCTCGGTCCGGACTGA
* * * **
31987376 TCTTAGAC-TGGGAATGAACTCTGTATGCCTAAGTCAACCCACAAAACG-ATCGTGGGGGCGCTC
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAAT-GTGCAGGCGCTC
* * * * *
31987439 AACTGGCCGGAGAGGCATAATGCAAAAGTCAGGGA-TCGGCCTGATCCCCCTCTATGTGCTGCCG
64 AACCGGCCGGAGAGGCAGAATGCAAAAGCCAGGGACT-GGCCCGATCCCCC-CTACGTGCTGCCG
* *
31987503 GTCCCGCTGCCACAACCCTCGGTCC-GACTGGG
127 ATCCCGCTGCCACAACCCTCGGTCCGGACT-GA
* * *
31987535 GCTTAGACATGGAATTAACTCCCTATGCCTAAGCCGACCCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA
31987576 TGAAATGGGC
Statistics
Matches: 161, Mismatches: 33, Indels: 11
0.79 0.16 0.05
Matches are distributed among these distances:
157 4 0.02
158 92 0.57
159 64 0.40
160 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAATGTGCAGGCGCTCAA
CCGGCCGGAGAGGCAGAATGCAAAAGCCAGGGACTGGCCCGATCCCCCCTACGTGCTGCCGATCC
CGCTGCCACAACCCTCGGTCCGGACTGA
Found at i:31988422 original size:26 final size:26
Alignment explanation
Indices: 31988372--31988422 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
31988362 CGATTTCGAT
*
31988372 CTTAGACTAGGAATGAACTCCGTATA
1 CTTAGACTAGGAATGAAATCCGTATA
* * *
31988398 CTTAGACTGGGGATGAAATCTGTAT
1 CTTAGACTAGGAATGAAATCCGTAT
31988423 GCCTAAGCCA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGAATGAAATCCGTATA
Found at i:31989523 original size:684 final size:682
Alignment explanation
Indices: 31988605--31990067 Score: 2020
Period size: 684 Copynumber: 2.1 Consensus size: 682
31988595 AACTCCATAT
* * * * * *
31988605 GCTTAGACATAGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAACGTGCAGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * *
31988670 CCGATTGGAGAGGTAGAATGCGCAAGTCAGGGACCGGCCAGGTCGTCCCTGCGTACTGTCGATCC
66 CCGGTCGGAGAGGCAGAATGCGCAAGTCAGAGACCGACCAGGTCCTCCCTGCATACTGTCGATCC
* *
31988735 TGCTATCGCAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACACTGTATGCCTAAGTCAA
131 TGCTATCGCAACCCTCGGTCTGGTCCGATCTTAGACTAGGAATGAACACCGTATGCCTAAGTCAA
* * *
31988800 CCCACGAAACGAGCGTTCGAACATTGAGCCGACCGAAGAGGCATAATGCGTAAGTCGAGGATCAA
196 CCCACAAAACGAGCGTTCGAACACTGAGCCGACCGAAGAGGCATAATGCGTAAGCCGAGGATCAA
* * ** * * *
31988865 ATAGGTCC-CTCTCTGCGTGTTGCTGGTCTCGCTGCCGCAACCCTTGGTCCGACTAGGGTTTAGA
261 ACAGGTCCTC-CTCTACGTGTTGCCAGTCCCGCTGCCACAACCCTCGGTCCGACTAGGGTTTAGA
* * * **
31988929 CATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAAGCGTACGGGCGCTCAGCCGGTCG
325 CAAGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAAGCGTACAGGCGCTCAGCCGACCG
* * * *
31988994 GAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGGTCCCCCCTACGTGCTGTCGATCC-TGCGTC
390 AAGAGGCAGAATGCGCAAGCCGGGGATCGACCTGGTACCCCCTACGTGCTGCCGATCCTTGC-T-
* * *
31989058 GCAACCCTCGGTCCGGTTCGATCTTAGACTAGGAATGAACTCTGTATGCTTAGACTGGGGGTGAA
453 GCAACCCTCAGTCCAGTTCAATCTTAGACTAGGAATGAACTCTGTATGCTTAGACTGGGGGTGAA
* * * * * *
31989123 CTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCCGAT
518 CTCCGTATGCCT-AGTCAACACATGAAACAAGCATACGGGCACTCAGCCGATCGGAGAGGCCGAT
* *
31989188 CGGAGAGGCATAATGCGTAAG-CTGAGGATCAGCCTGGTCCCCCTTTGCCTGCTGTCGATCCCGC
582 CGGAGAGGCATAATACGTAAGTC-GAGGATCAGCCTGGTCCCCCTTTGCCTGCTGCCGATCCCGC
*
31989252 TGCCGGTCCTGCTGCCACAACCCTCGATCTGACTGGG
646 TGCCGGTCCTGCTACCACAACCCTCGATCTGACTGGG
31989289 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * *
31989354 CCGGTCGGAGAGGCAGAATGTGTAAGTC-GAAGACCGACCAGGTCC-CTCCTGCATGCTGTCGAT
66 CCGGTCGGAGAGGCAGAATGCGCAAGTCAG-AGACCGACCAGGTCCTC-CCTGCATACTGTCGAT
* * * * *
31989417 CCTGCTGTCGTAACCCTCGTTCTGGTCCGATCTTAGTA-TGGGAATGAACTCCGTATGCCTAAGT
129 CCTGCTATCGCAACCCTCGGTCTGGTCCGATCTTAG-ACTAGGAATGAACACCGTATGCCTAAGT
* ** * *
31989481 CAACCCACAAAATGAGCGTTCGGGCGCTGAGCCGACCGAAGAGGCATAATGCGTAAGCCGTGGAT
193 CAACCCACAAAACGAGCGTTCGAACACTGAGCCGACCGAAGAGGCATAATGCGTAAGCCGAGGAT
* * * * *
31989546 CGACCAGGTCCTCCTCTACGTGTTGCCAGTCCCGCTGCCACAACTCTCGGTCCGGCTGGGGTTTA
258 CAAACAGGTCCTCCTCTACGTGTTGCCAGTCCCGCTGCCACAACCCTCGGTCCGACTAGGGTTTA
* ** * *
31989611 GACAAGGAATGAACTCCCTATGCCTAATCCAACCCACGAAACGGGTGTACAGGCGCTCAGCCTAC
323 GACAAGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAAGCGTACAGGCGCTCAGCCGAC
* *
31989676 CGAAGAGGCAGAATGCGTAAGTCGGGGATCGACCTGGTACCCCCTACGTGCTGCCGATCCTATTG
388 CGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCTGGTACCCCCTACGTGCTGCCGATCC--TTG
31989741 CTGCAACCCTCAGTCCAGTTCAATCTTAGACTAGGAATGAACTCTGTATGCTTAGACTGGGGGTG
451 CTGCAACCCTCAGTCCAGTTCAATCTTAGACTAGGAATGAACTCTGTATGCTTAGACTGGGGGTG
* *
31989806 AACTCCGTATGCCTAGTCAACACATGAAACAAGCATACGGGCATTCAGCCGATTGGAGAGGCCGA
516 AACTCCGTATGCCTAGTCAACACATGAAACAAGCATACGGGCACTCAGCCGATCGGAGAGGCCGA
* ** *
31989871 TCGGAGAGGCATAATACGTAAGTCGAGGATCAGCTTGGTCTTCCTTTGCTTGCTGCCGATCCCGC
581 TCGGAGAGGCATAATACGTAAGTCGAGGATCAGCCTGGTCCCCCTTTGCCTGCTGCCGATCCCGC
*
31989936 TGCCGGTCCTGCTACCACAACCCTCGATCTGGCTGGG
646 TGCCGGTCCTGCTACCACAACCCTCGATCTGACTGGG
* *
31989973 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAATGAGCTTGCGGGCGC
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAC----GAGCGTGCGGGCGC
* *
31990038 TCAGTCGGCCGGAGAGGCAGAATGCGCAAG
62 TCAGCCGGTCGGAGAGGCAGAATGCGCAAG
31990068 CTGGGGATCG
Statistics
Matches: 683, Mismatches: 84, Indels: 20
0.87 0.11 0.03
Matches are distributed among these distances:
683 2 0.00
684 561 0.82
685 77 0.11
686 1 0.00
687 3 0.00
688 39 0.06
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (682 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGGTCGGAGAGGCAGAATGCGCAAGTCAGAGACCGACCAGGTCCTCCCTGCATACTGTCGATCC
TGCTATCGCAACCCTCGGTCTGGTCCGATCTTAGACTAGGAATGAACACCGTATGCCTAAGTCAA
CCCACAAAACGAGCGTTCGAACACTGAGCCGACCGAAGAGGCATAATGCGTAAGCCGAGGATCAA
ACAGGTCCTCCTCTACGTGTTGCCAGTCCCGCTGCCACAACCCTCGGTCCGACTAGGGTTTAGAC
AAGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAAGCGTACAGGCGCTCAGCCGACCGA
AGAGGCAGAATGCGCAAGCCGGGGATCGACCTGGTACCCCCTACGTGCTGCCGATCCTTGCTGCA
ACCCTCAGTCCAGTTCAATCTTAGACTAGGAATGAACTCTGTATGCTTAGACTGGGGGTGAACTC
CGTATGCCTAGTCAACACATGAAACAAGCATACGGGCACTCAGCCGATCGGAGAGGCCGATCGGA
GAGGCATAATACGTAAGTCGAGGATCAGCCTGGTCCCCCTTTGCCTGCTGCCGATCCCGCTGCCG
GTCCTGCTACCACAACCCTCGATCTGACTGGG
Found at i:31990186 original size:26 final size:26
Alignment explanation
Indices: 31990148--31990200 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31990138 TCAGTCTGAT
31990148 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
31990174 CTTAGACAT-GGAATGAAGTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
31990200 C
1 C
31990201 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:31990521 original size:159 final size:158
Alignment explanation
Indices: 31990173--31990535 Score: 385
Period size: 158 Copynumber: 2.3 Consensus size: 158
31990163 AACTCCGTAT
* * * * *
31990173 GCTTAGACATGGAATGAAGTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTTAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTCCGGGCACTGAG
* * * ** * *
31990238 CCGACCGGAGAGGTAGAATGCGTAAGTCGGGGACCAACCCGATCCCCCCAGTGTGCTGTCGATCC
66 CCGACCGAAGAGGCAGAATGAGTAACCCAGGGACCAACCCGATCCCCCCAGTGTGCTGCCGATCC
* * * * *
31990303 TGTTGCCGCAACCCTCGATCCGGTCTGA
131 CGCTGCCACAACCCTCAATCCGGACTGA
* * *
31990331 TCTTAGAC-TGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACAAGCGTCCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTCCGGGCACTGA
* * ** *
31990395 GCCGACCGAAGAGGCATAATGAGTAACCCAGGGATCC-GCTTGGTCCCCCTCTA-TGTGCTGCC-
65 GCCGACCGAAGAGGCAGAATGAGTAACCCAGGGA-CCAACCCGATCCCCC-C-AGTGTGCTGCCG
*
31990457 AGTCCCGCTGCCACAACCCTCAATCC-GACTGGG
127 A-TCCCGCTGCCACAACCCTCAATCCGGACT-GA
* *
31990490 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACACACGAAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA
31990536 TGGGCGTGCA
Statistics
Matches: 167, Mismatches: 31, Indels: 13
0.79 0.15 0.06
Matches are distributed among these distances:
157 1 0.01
158 93 0.56
159 71 0.43
160 2 0.01
ACGTcount: A:0.26, C:0.31, G:0.25, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTCCGGGCACTGAG
CCGACCGAAGAGGCAGAATGAGTAACCCAGGGACCAACCCGATCCCCCCAGTGTGCTGCCGATCC
CGCTGCCACAACCCTCAATCCGGACTGA
Found at i:31990678 original size:26 final size:26
Alignment explanation
Indices: 31990649--31990701 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
31990639 CCGGTCCTAT
*
31990649 CTTAGGCTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
31990675 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
31990701 C
1 C
31990702 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.23, C:0.21, G:0.30, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:31990809 original size:884 final size:861
Alignment explanation
Indices: 31989289--31990936 Score: 1950
Period size: 884 Copynumber: 1.9 Consensus size: 861
31989279 TCTGACTGGG
*
31989289 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
** * * * * *
31989354 CCGGTCGGAGAGGCAGAATGTGTAAGTCGAAGACCGACCAGGTCCCTCCTGCATGCTGTCGATCC
66 CCGACCGGAGAGGCAGAATGCGTAAGTCGAAGACCAACCAGATCCCCCCAGCATGCTGTCGATCC
* * * *
31989419 TGCTGTCGTAACCCTCGTTCTGGTCCGATCTTAGTATGGGAATGAACTCCGTATGCCTAAGTCAA
131 TGCTGCCGCAACCCTCGATCCGGTCCGATCTTAGTATGGGAATGAACTCCGTATGCCTAAGTCAA
** * * * *
31989484 CCCACAAAATGAGCGTTCGGGCGCTGAGCCGACCGAAGAGGCATAATGCGTAAGCCGTGGATCGA
196 CCCACAAAACAAGCGTCCGGGCACTGAGCCGACCGAAGAGGCATAATGAGTAACCCGTGGATCGA
* * * ** * *
31989549 CCAGGTCCTCCTCTACGTGTTGCCAGTCCCGCTGCCACAACTCTCGGTCCGGCTGGGGTTTAGAC
261 CCAGGTCCCCCTCTACGTGCTGCCAGTCCCGCTGCCACAACCCTCAATCCGACTGGGGCTTAGAC
* * *
31989614 AAGGAATGAACTCCCTATGCCTAATCCAACCCACGAAACGGGTGTACAGGCGCTCAGCCTACCGA
326 AAGGAATGAACTCCCTATGCCTAAGCCAACACACGAAACGGGCGTACAGGCGCTCAGCCTACCGA
** * ** * * *
31989679 AGAGGCAGAATGCGTAAGTCGGGGATCGACCTGGTACCCCCTACGTGCTGCCGATCCTATTGCTG
391 AGAGGCAGAATGCACAAGTCGAGGATCGACCTAATACCCCCTACATGCTACCGATCCTACTGCTG
* * *
31989744 CAACCCTCAGTCCAGTTCAATCTTAGACTAGGAATGAACTCTGTATGCTTAGACTGGGGGTGAAC
456 CAACCCTCAGTCCAGTCCAATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGGATGAAC
* *
31989809 TCCGTATGCCTAGTCAACACATGAAACAAGCATACGGGCATTCAGCCGATTGGAGAGGCCGATCG
521 TCCGTATGCCTAGTCAACACATGAAACAAGCATACGGG-A-T-AGCC-A-T-G-CAGCCCGATCG
* **
31989874 GAGAGGCATAATACGTAAGTCGAGGATCAGCTTGGTCTTCCTTTGCTTGCTGCCGATCCCGCTGC
579 GAGAGGCATAATACGCAAGTCGAGGATCAGCCCGGTCTTCC--T-C-TGCT-----T---GCTGC
* * ***
31989939 CGGTCCTGCTACCACAACCCTCGATCTGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTA
632 CGGTCCTACTGCCACAACCCTCGATCCAACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTA
* *
31990004 AGCCAACCCATGAAACAAATGAGCTTGCGGGCGCTCAGTCGGCCGGAGAGGCAGAATGCGCAAGC
697 AGCCAACCCATGAAAC----GAGCGTGCGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCGCAAGC
31990069 TGGGGATCGATCTGGTGCCCTCTGCGTGTTGTCGATCCCGCTGCTGGTCTTGCTACCTCGACCCT
758 TGGGGATCGATCTGGTGCCCTCTGCGTGTTGTCGATCCCGCTGCTGGTCTTGCTACCTCGACCCT
31990134 CGGTTCAGTCTGATCTTAGACTGGGAATGAACTCCGTAT
823 CGGTTCAGTCTGATCTTAGACTGGGAATGAACTCCGTAT
* * *
31990173 GCTTAGACATGGAATGAAGTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTTAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* ** * **
31990238 CCGACCGGAGAGGTAGAATGCGTAAGTCGGGGACCAACCCGATCCCCCCAGTGTGCTGTCGATCC
66 CCGACCGGAGAGGCAGAATGCGTAAGTCGAAGACCAACCAGATCCCCCCAGCATGCTGTCGATCC
* * *
31990303 TGTTGCCGCAACCCTCGATCCGGTCTGATCTTAG-ACTGGGAATGAACTCTGTATGCCTAAGTCA
131 TGCTGCCGCAACCCTCGATCCGGTCCGATCTTAGTA-TGGGAATGAACTCCGTATGCCTAAGTCA
*
31990367 ACCCACGAAACAAGCGTCCGGGCACTGAGCCGACCGAAGAGGCATAATGAGTAACCCAG-GGATC
195 ACCCACAAAACAAGCGTCCGGGCACTGAGCCGACCGAAGAGGCATAATGAGTAACCC-GTGGAT-
** *
31990431 CG-CTTGGTCCCCCTCTATGTGCTGCCAGTCCCGCTGCCACAACCCTCAATCCGACTGGGGCTTA
258 CGACCAGGTCCCCCTCTACGTGCTGCCAGTCCCGCTGCCACAACCCTCAATCCGACTGGGGCTTA
* * * * **
31990495 GACATGGAATGAACTCCCTATGCCTAAGCCAACACACGAAATGGGCGTGCAGGGGCTCAGCCTGT
323 GACAAGGAATGAACTCCCTATGCCTAAGCCAACACACGAAACGGGCGTACAGGCGCTCAGCCTAC
* * * * * * *
31990560 CGGAGAGGCAGAGTGCACAAGTTGAGGATC-AGCCTAATCCCCCCTGCATGCTATCGATCCTGCT
388 CGAAGAGGCAGAATGCACAAGTCGAGGATCGA-CCTAATACCCCCTACATGCTACCGATCCTACT
* * * * *
31990624 GTTGCAACCCTC-GATCCGGTCCTATCTTAGGCTGGGAATGAACTCCGTATGCTTAGACTGGGGA
452 GCTGCAACCCTCAG-TCCAGTCCAATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGGA
* * * *
31990688 TGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGG-T-G-C-T-CAGCCCG-TCGG
516 TGAACTCCGTATGCCT-AGTCAACACATGAAACAAGCATACGGGATAGCCATGCAGCCCGATCGG
* *
31990747 AGAGGTATAATACGCAAGTCGGGGATCAGCCCGGTCCCCCTCTGCATGCTGCTGATCTTGCTGCC
580 AGAGGCATAATACGCAAGTCGAGGATCAGCCCGGT----CT-T-C---CT-CTG--CTTGCTGCC
* * * * *
31990812 GGTCCTACTGCCATAACCTTCGGTCCAACTGGGGCTTAGACATGGAATGAACTCTGTATGTCTAA
633 GGTCCTACTGCCACAACCCTCGATCCAACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAA
* * * *
31990877 GCCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCGGTCGGAGAGGCATAATGTGCAAGC
698 GCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCGCAAGC
31990937 CCGGGATGGC
Statistics
Matches: 647, Mismatches: 100, Indels: 50
0.81 0.13 0.06
Matches are distributed among these distances:
868 39 0.06
872 110 0.17
873 5 0.01
875 1 0.00
876 3 0.00
877 1 0.00
878 3 0.00
879 4 0.01
880 3 0.00
881 1 0.00
882 1 0.00
883 3 0.00
884 447 0.69
885 26 0.04
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (861 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
CCGACCGGAGAGGCAGAATGCGTAAGTCGAAGACCAACCAGATCCCCCCAGCATGCTGTCGATCC
TGCTGCCGCAACCCTCGATCCGGTCCGATCTTAGTATGGGAATGAACTCCGTATGCCTAAGTCAA
CCCACAAAACAAGCGTCCGGGCACTGAGCCGACCGAAGAGGCATAATGAGTAACCCGTGGATCGA
CCAGGTCCCCCTCTACGTGCTGCCAGTCCCGCTGCCACAACCCTCAATCCGACTGGGGCTTAGAC
AAGGAATGAACTCCCTATGCCTAAGCCAACACACGAAACGGGCGTACAGGCGCTCAGCCTACCGA
AGAGGCAGAATGCACAAGTCGAGGATCGACCTAATACCCCCTACATGCTACCGATCCTACTGCTG
CAACCCTCAGTCCAGTCCAATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGGATGAAC
TCCGTATGCCTAGTCAACACATGAAACAAGCATACGGGATAGCCATGCAGCCCGATCGGAGAGGC
ATAATACGCAAGTCGAGGATCAGCCCGGTCTTCCTCTGCTTGCTGCCGGTCCTACTGCCACAACC
CTCGATCCAACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAG
CGTGCGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCGCAAGCTGGGGATCGATCTGGTGCCCTCT
GCGTGTTGTCGATCCCGCTGCTGGTCTTGCTACCTCGACCCTCGGTTCAGTCTGATCTTAGACTG
GGAATGAACTCCGTAT
Found at i:31991101 original size:158 final size:158
Alignment explanation
Indices: 31990819--31991124 Score: 416
Period size: 158 Copynumber: 1.9 Consensus size: 158
31990809 GCCGGTCCTA
* * ** **
31990819 CTGCCATAACCTTCGGTCCAACTGGGGCTTAGACATGGAATGAACTCTGTATGTCTAAGCCAACC
1 CTGCCATAACCCTCGATCCAACTGGGGCTTAGACATGGAATGAACTCCCTATACCTAAGCCAACC
* ** * * *
31990884 CATGAAACGAGCGTGCGGGTGCTCAGCCGGTCGGAGAGGCATAATGTGCAAGCCCGGGAT-GGCC
66 CATGAAACGAGCATGCGGGCACTCAGCCGGTCGGACAGGCAAAATGCGCAAGCCCGGGATCGGCC
* *
31990948 TGATCCTCCTCTGCGTGCCATCGGTCCCG
131 CGATCC-CCCCTGCGTGCCATCGGTCCCG
*
31990977 CTGCCATAACCCTCGATCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATACCTAAGCCAACC
1 CTGCCATAACCCTCGATCCAACTGGGGCTTAGACATGGAATGAACTCCCTATACCTAAGCCAACC
* * * *
31991042 CATGACACGGGCATGCGGGCATTCAGCCGGTCGGACAGGCAAAATGCGCAAGCCGGGGATCGGCC
66 CATGAAACGAGCATGCGGGCACTCAGCCGGTCGGACAGGCAAAATGCGCAAGCCCGGGATCGGCC
*
31991107 CGGTCCCCCCTGCGTGCC
131 CGATCCCCCCTGCGTGCC
31991125 GTCGATCCTG
Statistics
Matches: 127, Mismatches: 20, Indels: 2
0.85 0.13 0.01
Matches are distributed among these distances:
158 119 0.94
159 8 0.06
ACGTcount: A:0.22, C:0.32, G:0.28, T:0.18
Consensus pattern (158 bp):
CTGCCATAACCCTCGATCCAACTGGGGCTTAGACATGGAATGAACTCCCTATACCTAAGCCAACC
CATGAAACGAGCATGCGGGCACTCAGCCGGTCGGACAGGCAAAATGCGCAAGCCCGGGATCGGCC
CGATCCCCCCTGCGTGCCATCGGTCCCG
Found at i:31991437 original size:513 final size:510
Alignment explanation
Indices: 31989939--31991636 Score: 1737
Period size: 513 Copynumber: 3.3 Consensus size: 510
31989929 ATCCCGCTGC
* * * *
31989939 CGGTCCTGCTACCACAACCCTCGATCTGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTA
1 CGGTCCCGCTGCCACAACCCTCGATCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTA
* * * * *
31990004 AGCCAACCCATGAAACAAATGAGCTTGCGGGCGCTCAGTCGGCCGGAGAGGCAGAATGCGCAAGC
66 AGCCAACCCACGAAAC----GGGCGTGCGGGC-CTCAGCCGGTCGGAGAGGCAGAATGCGCAAGC
* * ** * * * * ** * * *** *
31990069 TGGGGATCGATCTGGTGCCCTCTGCGTGTTGTCGATCCCGCTGCTGGTCTTGCTACCT-CGACCC
126 CGAGGATCGGCCCGATCCCCCCTGCGTGCCGTCGAT-CCGCTACTGGTCCTG-TTGTTGCAACCC
* * * *
31990133 TCGGTTCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAAGTCCGTA
189 TCGATTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTA
* *
31990198 TGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTTAGCCGACCGGAGAGGTAGAATGCGTAA
254 TGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGCCG-CTGGAGAGGTAGAATGCGTAA
* * * * * * *
31990263 GTCGGGGACCAACCCGAT-CCCCCCAGTGTGCTGTCGATCCTGTTGCCGCAACCCTCGATCCGGT
318 GTCGGGGACC-ACCCGGTCCCCCCCTGCGTGCTGTCGATCCTGCTACTGCAACCCTTGATCCGGT
* * *
31990327 CTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACAAGCGTCCGGGCAC
382 CTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTCCGGGCGC
* * * * * * **
31990392 TGAGCCGACCGAAGAGGCATAATGAGTAA-CCCAGGGATCCGCTTGGTCCCCCTCTATGTGCTGC
447 TGAGCCGACCGGAGAGGCATAATGAGCAAGCCC-GGGATCGGCCTGATCCCCCTCTACGTGCTAT
* * *
31990456 CAGTCCCGCTGCCACAACCCTCAATCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTA
1 CGGTCCCGCTGCCACAACCCTCGATCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTA
* * * * * * **
31990521 AGCCAACACACGAAATGGGCGTGCAGGGGCTCAGCCTGTCGGAGAGGCAGAGTGCACAAGTTGAG
66 AGCCAACCCACGAAACGGGCGTGC-GGGCCTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCCGAG
* ** * * *
31990586 GATCAGCCTAATCCCCCCTGCATG-C-T--AT-CG--A----TCCTGCTGTTGCAACCCTCGATC
130 GATCGGCCCGATCCCCCCTGCGTGCCGTCGATCCGCTACTGGTCCTGTTGTTGCAACCCTCGATT
* * *
31990640 CGGTCCTATCTTAGGCTGGGAATGAACTCCGTATGCTTAGAC-TGGGGATGAACTCCGTATGCCT
195 CGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAT-GGAATGAACTCCGTATGCCT
* ** * * *
31990704 AAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGCC-CGTCGGAGAGGTATAATACGCAAGTCG
259 AAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGCCGC-T-GGAGAGGTAGAATGCGTAAGTCG
* * * * *
31990768 GGGATCAGCCCGGTCCCCCTCTGCATGCTGCTGATCTTGCTGCCGGTCCTACTGCCATAACCTTC
322 GGGACCA-CCCGGTCCCCCCCTGC--G-TGCTG-TC--GAT-CC--TGCTACTG-CA-ACCCTT-
* ** ** * *
31990833 GGTCC-AACTGGGGCTTAGACAT-GGAATGAACTCTGTATGTCTAAGCCAACCCATGAAACGAGC
374 GATCCGGTCT-GATCTTAGAC-TGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGC
* * * ** * *
31990896 GTGCGGGTGCTCAGCCGGTCGGAGAGGCATAATGTGCAAGCCCGGGAT-GGCCTGATCCTCCTCT
437 GTCCGGGCGCTGAGCCGACCGGAGAGGCATAATGAGCAAGCCCGGGATCGGCCTGATCCCCCTCT
* *
31990960 GCGTGCCAT
502 ACGTGCTAT
* * *
31990969 CGGTCCCGCTGCCATAACCCTCGATCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATACCTA
1 CGGTCCCGCTGCCACAACCCTCGATCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTA
* * * * * * *
31991034 AGCCAACCCATGACACGGGCATGCGGGCATTCAGCCGGTCGGACAGGCAAAATGCGCAAGCCGGG
66 AGCCAACCCACGAAACGGGCGTGCGGGC-CTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCCGAG
* *
31991099 GATCGGCCCGGTCCCCCCTGCGTGCCGTCGATCCTGCTACTGGTCCTGTTGTTGCAACTCTCGAT
130 GATCGGCCCGATCCCCCCTGCGTGCCGTCGATCC-GCTACTGGTCCTGTTGTTGCAACCCTCGAT
* *
31991164 TCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCTGTATGCCT
194 TCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCT
*
31991229 AAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGCCTGCTGGAGAGGCAGAATGCGTAAGTCGG
259 AAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGCC-GCTGGAGAGGTAGAATGCGTAAGTCGG
* *
31991294 GGACCGACCCGGTCCCCCCCTGCGTGCTGTCGATCCTGCTATTGCAACCCTTAATCCGGTCTGAT
323 GGACC-ACCCGGTCCCCCCCTGCGTGCTGTCGATCCTGCTACTGCAACCCTTGATCCGGTCTGAT
* * ** *
31991359 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATTTGGGCGTTGAGC
387 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTCCGGGCGCTGAGC
* ** *
31991424 CGACCGGAGAGGCATAATGCGCAAGCTGGGGATCGGCCCGATCCCCCTCTACGTGCTAT
452 CGACCGGAGAGGCATAATGAGCAAGCCCGGGATCGGCCTGATCCCCCTCTACGTGCTAT
* * * * *
31991483 CGGTCTCGCTGCCACAACCCTCGGTTCGGTTGGGGTTTAGACATGGAATGAACTCCCTATGCCTA
1 CGGTCCCGCTGCCACAACCCTCGATCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTA
* * * *
31991548 AGCCGACCCACGAAACGGGCGTGTGGGTCCTCAGCTGG-CAGGAGAGGCAGAATACGCAAGCCGA
66 AGCCAACCCACGAAACGGGCGTGCGGG-CCTCAGCCGGTC-GGAGAGGCAGAATGCGCAAGCCGA
* *
31991612 GGATTGGCCCTAT-CCCCCTGCGTGC
129 GGATCGGCCCGATCCCCCCTGCGTGC
31991637 TACCGAACCT
Statistics
Matches: 953, Mismatches: 184, Indels: 92
0.78 0.15 0.07
Matches are distributed among these distances:
499 1 0.00
500 3 0.00
501 132 0.14
502 6 0.01
504 1 0.00
505 5 0.01
506 2 0.00
507 2 0.00
508 2 0.00
509 4 0.00
511 5 0.01
512 6 0.01
513 296 0.31
514 232 0.24
515 8 0.01
516 6 0.01
517 73 0.08
518 3 0.00
519 3 0.00
521 3 0.00
522 5 0.01
523 1 0.00
525 150 0.16
526 3 0.00
527 1 0.00
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.21
Consensus pattern (510 bp):
CGGTCCCGCTGCCACAACCCTCGATCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTA
AGCCAACCCACGAAACGGGCGTGCGGGCCTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCCGAGG
ATCGGCCCGATCCCCCCTGCGTGCCGTCGATCCGCTACTGGTCCTGTTGTTGCAACCCTCGATTC
GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAA
GCCAACCCATGAAACGAGCGTGCGGGCACTCAGCCGCTGGAGAGGTAGAATGCGTAAGTCGGGGA
CCACCCGGTCCCCCCCTGCGTGCTGTCGATCCTGCTACTGCAACCCTTGATCCGGTCTGATCTTA
GACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTCCGGGCGCTGAGCCGAC
CGGAGAGGCATAATGAGCAAGCCCGGGATCGGCCTGATCCCCCTCTACGTGCTAT
Found at i:31991501 original size:159 final size:159
Alignment explanation
Indices: 31991200--31991978 Score: 599
Period size: 159 Copynumber: 4.9 Consensus size: 159
31991190 ACTCCATATG
*
31991200 CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGC
* * * * * * * **
31991265 CTG-CTGGAGAGGCAGAATGCGTAAGTCGGGGACCGACCCGGTCCCCCCCTGCGTGCTGTCGATC
66 C-GACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGAT-CCCCCCTACGTGCTACCGATC
* ** *
31991329 CTGCTATTGCAACCCTTAATCCGGTCT-GAT
129 CTGCTGTCACAACCCTCAATCCGGTCTGGAT
* * ** ** *
31991359 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATTTGGGCGTTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAG
* * * *
31991423 CCGACCGGAGAGGCATAATGCGCAAGCTGGGGATCGGCCCGATCCCCCTCTACGTGCTATCGGT-
65 CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCC-CTACGTGCTACCGATC
* ** * *
31991487 CTCGCTGCCACAACCCTCGGTTCGGT-TGGGGT
129 CT-GCTGTCACAACCCTCAATCCGGTCT-GGAT
* * * * *
31991519 -TTAGACATGGAATGAACTCCCTATGCCTAAGCCGACCCACGAAACGGGCGTGTGGGTC-CTCAG
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGG-CACTCAG
* * * * * * * * *
31991582 CTGGCAGGAGAGGCAGAATACGCAAGCCGAGGATTGGCCCTAT-CCCCCTGCGTGCTACCGAACC
65 CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTACGTGCTACCGATCC
* ** * * * * *
31991646 TTCTGTCGTAACCCTCAGTCTGATC-CGAA
130 TGCTGTCACAACCCTCAATCCGGTCTGGAT
* * ** * * ** *
31991675 CTTAGAC-TGGGAATGAACTCCGTATGCCTGAGTCAACCCACAAAATGAGCGTTCGGGCGTTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAG
* ** ** * * * *
31991739 CCGACCGGAGAGGCATAATGCATAAGCCGGGGATCAACCCGATCCCCCTTTACATGCTGCCGGTC
65 CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCC-CTACGTGCTACCGATC
*** * * **
31991804 CCATTGTCACAACCCTCGATCTGG-CTGGGG
129 CTGCTGTCACAACCCTCAATCCGGTCTGGAT
* *
31991834 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCACTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGC
* ** * * * *
31991899 TGGTCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCTCGATCCCCCCTACGTGCTGCCGAACCT
66 CGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTACGTGCTACCGATCCT
* **
31991964 TCTGTTGCAACCCTC
131 GCTGTCACAACCCTC
31991979 GATCTGATCC
Statistics
Matches: 474, Mismatches: 129, Indels: 35
0.74 0.20 0.05
Matches are distributed among these distances:
156 3 0.01
157 105 0.22
158 45 0.09
159 316 0.67
160 5 0.01
ACGTcount: A:0.22, C:0.30, G:0.27, T:0.20
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGC
CGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTACGTGCTACCGATCCT
GCTGTCACAACCCTCAATCCGGTCTGGAT
Found at i:31991782 original size:316 final size:315
Alignment explanation
Indices: 31991199--31992023 Score: 992
Period size: 316 Copynumber: 2.6 Consensus size: 315
31991189 AACTCCATAT
** *
31991199 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCACTCAG
* * * * ** * *
31991264 CCT-GCTGGAGAGGCAGAATGCGTAAGTCGGGGACCGACCCGGTCCCCCCCTGCGTGCTGTCGAT
66 -CTGGC-GGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCC--TATCCCCCTGCGTGCTGCCGAA
* * * * * * * *
31991328 CCTGCTATTGCAACCCTTAATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
127 CCTTCTGTTGCAACCCTCAGTCTGATCCGAACTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
** * * *
31991393 AACCCATGAAACGAGCATTTGGGCGTTGAGCCGACCGGAGAGGCATAATGCGCAAGCTGGGGATC
192 AACCCACAAAACGAGCATTCGGGCGTTGAGCCGACCGGAGAGGCATAATGCACAAGCCGGGGATC
** * * * * * *
31991458 GGCCCGATCCCCCTCTACGTGCTATCGGTCTCGCTGCCACAACCCTCGGT-TCGGTTGGG
257 AACCCGATCCCCCTCTACATGCTACCGGTCCCACTGCCACAACCCTCGATCT-GGCTGGG
* * * *
31991517 GTTTAGACATGGAATGAACTCCCTATGCCTAAGCCGACCCACGAAACGGGCGTGTGGGTC-CTCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGG-CACTCA
* * * *
31991581 GCTGGCAGGAGAGGCAGAATACGCAAGCCGAGGATTGGCCCTATCCCCCTGCGTGCTACCGAACC
65 GCTGGC-GGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCTATCCCCCTGCGTGCTGCCGAACC
* * *
31991646 TTCTGTCGTAACCCTCAGTCTGATCCGAACTTAGACTGGGAATGAACTCCGTATGCCTGAGTCAA
129 TTCTGTTGCAACCCTCAGTCTGATCCGAACTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * *
31991711 CCCACAAAATGAGCGTTCGGGCGTTGAGCCGACCGGAGAGGCATAATGCATAAGCCGGGGATCAA
194 CCCACAAAACGAGCATTCGGGCGTTGAGCCGACCGGAGAGGCATAATGCACAAGCCGGGGATCAA
* * * *
31991776 CCCGATCCCCCTTTACATGCTGCCGGTCCCATTGTCACAACCCTCGATCTGGCTGGG
259 CCCGATCCCCCTCTACATGCTACCGGTCCCACTGCCACAACCCTCGATCTGGCTGGG
31991833 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCACTCAG
* * * *
31991898 CTGGTCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCTCGATCCCCCCTACGTGCTGCCGAACC
66 CTGG-CGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCTAT-CCCCCTGCGTGCTGCCGAACC
*
31991963 TTCTGTTGCAACCCTC-GATCTGATCCGATCCGATCTTAGACTGGGAATGAACTCCTTATGC
129 TTCTGTTGCAACCCTCAG-TCTGATCCGA----A-CTTAGACTGGGAATGAACTCCGTATGC
31992024 TTGACTAGGG
Statistics
Matches: 429, Mismatches: 66, Indels: 20
0.83 0.13 0.04
Matches are distributed among these distances:
315 1 0.00
316 268 0.62
317 47 0.11
318 85 0.20
319 1 0.00
321 1 0.00
322 26 0.06
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (315 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCACTCAG
CTGGCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCTATCCCCCTGCGTGCTGCCGAACCTT
CTGTTGCAACCCTCAGTCTGATCCGAACTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
CACAAAACGAGCATTCGGGCGTTGAGCCGACCGGAGAGGCATAATGCACAAGCCGGGGATCAACC
CGATCCCCCTCTACATGCTACCGGTCCCACTGCCACAACCCTCGATCTGGCTGGG
Found at i:31992047 original size:25 final size:25
Alignment explanation
Indices: 31992001--31992048 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
31991991 TCCGATCTTA
*
31992001 GACTGGGAATGAACTCCTTATGCTT
1 GACTGGGAATGAACTCCGTATGCTT
*
31992026 GACTAGGG-ATGAACTTCGTATGC
1 GACT-GGGAATGAACTCCGTATGC
31992049 CTAAGTCAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
25 17 0.85
26 3 0.15
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (25 bp):
GACTGGGAATGAACTCCGTATGCTT
Found at i:31992624 original size:159 final size:158
Alignment explanation
Indices: 31992377--31992679 Score: 383
Period size: 159 Copynumber: 1.9 Consensus size: 158
31992367 CGGTCTGATC
* * * * * *
31992377 TTAGACTGGGAATGAACTCCGTATGCCTAAGTAAACCCACGAAACGAGCGTGCGGGCGTTGAGCC
1 TTAGACTGGGAATGAACTCCCTATGCCTAAGCAAACCCACAAAACGAGCGTGCGGGCGCTCAACC
* * * * * **
31992442 AATCGGAGAGGCATAATACGCAAGTCGGGGATCAGCCCGATCCCCCTCTCCGTGCTGTCGATCCC
66 AACCGGAGAGGCAGAATACGCAAGCCAGAGATCAGCCCGATCCCCC-CTCCGTGCTACCGATCCC
31992507 GCTGCCACAACCCTCAGTTTGGCTGGGGA
130 GCTGCCACAACCCTCAGTTTGGCTGGGGA
* * *
31992536 TTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGTGGGCGCTCAAC
1 TTAGAC-TGGGAATGAACTCCCTATGCCTAAGCAAACCCACAAAACGAGCGTGCGGGCGCTCAAC
* * * * *
31992600 CGACCGGAGAGGCAGAATGCGCAAGCCAGAGATCGGCCCGATCCCCCCTGCGTGCTACCGATCCT
65 CAACCGGAGAGGCAGAATACGCAAGCCAGAGATCAGCCCGATCCCCCCTCCGTGCTACCGATCCC
*
31992665 GCTGCCGCAACCCTC
130 GCTGCCACAACCCTC
31992680 GGTCCAATCC
Statistics
Matches: 121, Mismatches: 22, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
158 28 0.23
159 92 0.76
160 1 0.01
ACGTcount: A:0.24, C:0.32, G:0.27, T:0.17
Consensus pattern (158 bp):
TTAGACTGGGAATGAACTCCCTATGCCTAAGCAAACCCACAAAACGAGCGTGCGGGCGCTCAACC
AACCGGAGAGGCAGAATACGCAAGCCAGAGATCAGCCCGATCCCCCCTCCGTGCTACCGATCCCG
CTGCCACAACCCTCAGTTTGGCTGGGGA
Found at i:31993124 original size:29 final size:29
Alignment explanation
Indices: 31993091--31993152 Score: 115
Period size: 29 Copynumber: 2.1 Consensus size: 29
31993081 GAATGAACTC
*
31993091 CGTATGCCTAAGTCAACCCATGAAACGAG
1 CGTATGCCTAAGTCAACCCATGAAACAAG
31993120 CGTATGCCTAAGTCAACCCATGAAACAAG
1 CGTATGCCTAAGTCAACCCATGAAACAAG
31993149 CGTA
1 CGTA
31993153 CGGGCGCTGA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.35, C:0.27, G:0.19, T:0.18
Consensus pattern (29 bp):
CGTATGCCTAAGTCAACCCATGAAACAAG
Found at i:31993845 original size:26 final size:26
Alignment explanation
Indices: 31993794--31993846 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
31993784 CCAGTCTGAT
* *
31993794 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
31993820 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
31993846 C
1 C
31993847 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:31994098 original size:722 final size:722
Alignment explanation
Indices: 31992460--31994129 Score: 1840
Period size: 723 Copynumber: 2.3 Consensus size: 722
31992450 AGGCATAATA
* * *
31992460 CGCAAGTCGGGGATC-AGCCCGATCCCCCTCTCCGTGCTGTCGATCCCGCTGCCACAACCCTCAG
1 CGCAAGTCAGGGATCGA-CCCGATCCCCCTCTACGTGCTGT-GATCCCACTGCCACAACCCTCAG
** * * * *
31992524 TTTGGCTGGGGATTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGT
64 TCCGGCTGGAGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGT
* *
31992589 GGGCGCTCAACCGACCGGAGAGGCAGAATGCGCAAGCCAGAGATCGGCCCGATCCCCC-CTGCGT
129 GGGCGCTCAGCGGA-CGGAGAGGCAGAATGCGCAAGCCAGAGATCGGCCCGATCCCCCTCTGCGT
* * * * *
31992653 GCTACCGATCCTGCTGCCGCAACCCTCGGTCCAATCCAATCTTAGACTGGCATTGAACTCCATAT
193 GCTATCGATCCTGCTGCCACAACCCTCAGTCCGATCCAATCTTAGACTGGCAATGAACTCCATAT
* ** *
31992718 GCTTAGACTGGGGATGAACTATGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGTGCTCAG
258 GCTTAGACTGGGGAGGAACTATGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGTGCTCAA
** *
31992783 CAGACCGGAGGGCCGATCGAAAAGGCATAATGCACAAGCCAGGGATTAGCACAGTCCCCCTCTGC
323 CAGACCAAAAGGCCGATCGAAAAGGCATAATGCACAAGCCAGGGATTAGCACAGTCCCCCTCTGC
** * * * *
31992848 ATGCTGTCGATCTCGTTACGAATCTTACTGCCACAACCCTCGGTCTAGCTGGGGTTAGACATGGA
388 ATGCTACCGATCCCGTGACGAATCTTACTGCCACAACCCTCGATCGAGCTGGGGTTAGACATGGA
* * * * *
31992913 ATGAACTTCGTATGCCTAAAAAAACCATCGAAACGGGCGTGCGGTCGCTCAGTCGATCGGAGAGG
453 ATGAACTCCGTATGCCTAAAAAAACCATCGAAACGAGCGTACGGGCGCTCAGTCGACCGGAGAGG
*
31992978 CAAAATACGCAAGCCGAGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCCTACTGCTGGTCCT
518 CAAAATACGCAAGCCGAGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCCTACTACTGGTCCT
* *
31993043 ACTACCGTAACCCTCAGTCCGATCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAAC
583 ACTACCGCAACCCTCAGTCCGATCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGACAAC
* * * * * * *
31993108 CCATGAAACGAGCGTATGCCTAAGTCAACCCATGAAACAAGCGTACGGGCGCTGAGCCAGTCGGA
648 CAATGAAACGACCATATGCCTAAGCCAACCCATGAAACAAGCGTAC-GGCACTCAGCCAGTCGAA
* *
31993173 GAGGCATAATG
712 GAAGCAGAATG
* * * * * *
31993184 TGCAAGTCAGGGATTGACCTGATCCCGCTTTACGTGTTGTGATCCCACTGCCACAACCCTCAGTC
1 CGCAAGTCAGGGATCGACCCGATCCCCCTCTACGTGCTGTGATCCCACTGCCACAACCCTCAGTC
* * * *
31993249 TGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGTGTGCGG
66 CGGCTGGAGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGTGG
* * * * ** * *
31993314 GCACTTAGCTGACTGGAGAGGCAGAATGCGGAAGTTAGCGATCGG-TCGATCCCCCT-TGCGTGC
131 GCGCTCAGCGGAC-GGAGAGGCAGAATGCGCAAGCCAGAGATCGGCCCGATCCCCCTCTGCGTGC
* **
31993377 TATCGATCCTGCTGCCACAACCCTCAGTCCGATCCAATCTTAGACTGGCAATGAAGTCTGTATGC
195 TATCGATCCTGCTGCCACAACCCTCAGTCCGATCCAATCTTAGACTGGCAATGAACTCCATATGC
31993442 TTAGACTGGGGAGGAACT-TCGTATGCCTAAGAT-AACCCACGAAACGAACGTGCGGGTGCTCAA
260 TTAGACTGGGGAGGAACTAT-GTATGCCTAAG-TCAACCCACGAAACGAACGTGCGGGTGCTCAA
* * * * * * * *
31993505 CCGGCCAAAAGGCC-AGTC-AGAGAGGCATAATGCGCAAGCCGGGGATTAGCACGGTCCCTCTTT
323 CAGACCAAAAGGCCGA-TCGA-AAAGGCATAATGCACAAGCCAGGGATTAGCACAGTCCCCCTCT
** * * ** **
31993568 GTGTGCTACCGATCCCGCTGCCG-GTCTTGGTGCCGTAACCCTCGATCCGA-C-GAGGGCTTAGA
386 GCATGCTACCGATCCCG-TGACGAATCTTACTGCCACAACCCTCGAT-CGAGCTG-GGG-TTAGA
* *
31993630 CATGGAATGAACTCCGTATGCCTAAGAAAACCCA-CGAAATGAGCGTACGGGCGCTCAGTCGACC
447 CATGGAATGAACTCCGTATGCCTAA-AAAAACCATCGAAACGAGCGTACGGGCGCTCAGTCGACC
* * *
31993694 GGAGAGGCAGAATGCGCAAGCCGGGGATC-AGCCCGATCCCCCCTGCGTGCTGTCGATCCTACTA
511 GGAGAGGCAAAATACGCAAGCCGAGGATCGA-CCCGATCCCCCCTGCGTGCTGTCGATCCTACTA
* * * * *
31993758 CTGGTCCTGCTGCCGCAACCCTC-GATCC-AGTCTGATCTTAGACTGGGAATGAACTTCGTATG-
575 CTGGTCCTACTACCGCAACCCTCAG-TCCGA-TCCGATCTTAGACTAGGAATGAACTCCGTATGC
* *** * **
31993820 CTTAGACATGGAATG-AAC-TCCATATGCCTAAGCCAACCCATGAAATGAGCATGTA-GGCACTC
638 CTAAGACAACCAATGAAACGACCATATGCCTAAGCCAACCCATGAAACAAGC--GTACGGCACTC
* *
31993882 AGTC-GATCTAAGAAGCAGAATG
701 AGCCAG-TCGAAGAAGCAGAATG
* * * *** * *
31993904 CGCAAGTC-GGGGTCGACCCGGTCCCCCTCTGCGTGCTGTCGATCTTGCTGTCGCAACCCTC-GA
1 CGCAAGTCAGGGATCGACCCGATCCCCCTCTACGTGCTGT-GATCCCACTGCCACAACCCTCAG-
* * * *
31993967 TCCGGTCT-GATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAGCGAGCGT
64 TCCGG-CTGGAGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGT
* * * * *
31994030 TTGGGCGCTGAGCAGGTCGGAGAGGCATAATTCGCAAGCCAGAGATCGGCCCGATCCCCCTCTGC
127 GTGGGCGCTCAGC-GGACGGAGAGGCAGAATGCGCAAGCCAGAGATCGGCCCGATCCCCCTCTGC
* * * *
31994095 GTGCTGTCGGTCCCGTTGCCACAACCCTCAGTCCG
191 GTGCTATCGATCCTGCTGCCACAACCCTCAGTCCG
31994130 GCTGGGGCTT
Statistics
Matches: 786, Mismatches: 135, Indels: 52
0.81 0.14 0.05
Matches are distributed among these distances:
719 26 0.03
720 154 0.20
721 21 0.03
722 259 0.33
723 288 0.37
724 37 0.05
725 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (722 bp):
CGCAAGTCAGGGATCGACCCGATCCCCCTCTACGTGCTGTGATCCCACTGCCACAACCCTCAGTC
CGGCTGGAGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGTGG
GCGCTCAGCGGACGGAGAGGCAGAATGCGCAAGCCAGAGATCGGCCCGATCCCCCTCTGCGTGCT
ATCGATCCTGCTGCCACAACCCTCAGTCCGATCCAATCTTAGACTGGCAATGAACTCCATATGCT
TAGACTGGGGAGGAACTATGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGTGCTCAACAG
ACCAAAAGGCCGATCGAAAAGGCATAATGCACAAGCCAGGGATTAGCACAGTCCCCCTCTGCATG
CTACCGATCCCGTGACGAATCTTACTGCCACAACCCTCGATCGAGCTGGGGTTAGACATGGAATG
AACTCCGTATGCCTAAAAAAACCATCGAAACGAGCGTACGGGCGCTCAGTCGACCGGAGAGGCAA
AATACGCAAGCCGAGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCCTACTACTGGTCCTACT
ACCGCAACCCTCAGTCCGATCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGACAACCAA
TGAAACGACCATATGCCTAAGCCAACCCATGAAACAAGCGTACGGCACTCAGCCAGTCGAAGAAG
CAGAATG
Found at i:31994244 original size:159 final size:158
Alignment explanation
Indices: 31993819--31994285 Score: 455
Period size: 159 Copynumber: 2.9 Consensus size: 158
31993809 AACTTCGTAT
* * * * *
31993819 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAATGAGCATGTAGGCACTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCGCTCAG
* * *
31993884 TCGATCTA--AGAAGCAGAATGCGCAAGTCGGGG-TCGACCCGGTCCCCCTCTGCGTGCTGTCGA
66 CCGA-C-AGGAGAGGCAGAATGCGCAAGTCGGGGATCG-CCCGATCCCCCTCTGCGTGCTGTCGA
* *
31993946 TCTTGCTGTCGCAACCCTCGATCCGGTCTGA
128 TCCTGCTGTCACAACCCTCGATCCGGTCTGA
* * * * * *
31993977 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAGCGAGCGTTTGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCGCTCA
* * * * * * * *
31994041 GCAGGTC-GGAGAGGCATAATTCGCAAGCCAGAGATCGGCCCGATCCCCCTCTGCGTGCTGTCGG
65 GC-CGACAGGAGAGGCAGAATGCGCAAGTCGGGGATC-GCCCGATCCCCCTCTGCGTGCTGTCGA
* * * *
31994105 TCCCGTTGCCACAACCCTC-AGTCCGG-CTGGG
128 TCCTGCTGTCACAACCCTCGA-TCCGGTCT-GA
* * * *
31994136 GCTTAGTCATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGGGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCGCTCAG
* * * * *
31994201 CCGACAGGAGAGGTAGAATGCGTAAGTCGGGGATCAGCTCGAT-CCCCACTGCGTGCAGTCGATC
66 CCGACAGGAGAGGCAGAATGCGCAAGTCGGGGATC-GCCCGATCCCCCTCTGCGTGCTGTCGATC
*
31994265 CTGCTGTCACAACCCTTGATC
130 CTGCTGTCACAACCCTCGATC
31994286 TGATCTGATC
Statistics
Matches: 243, Mismatches: 55, Indels: 22
0.76 0.17 0.07
Matches are distributed among these distances:
157 1 0.00
158 109 0.45
159 131 0.54
160 2 0.01
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCGCTCAG
CCGACAGGAGAGGCAGAATGCGCAAGTCGGGGATCGCCCGATCCCCCTCTGCGTGCTGTCGATCC
TGCTGTCACAACCCTCGATCCGGTCTGA
Found at i:31994352 original size:26 final size:26
Alignment explanation
Indices: 31994300--31994352 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
31994290 CTGATCCGAT
*
31994300 CTTAGACTGGGAGTGAACTCCGTATG
1 CTTAGACTGGGAGTGAACTCCGCATG
*
31994326 CTTAGACT-GGAGATGAACTTCGCATG
1 CTTAGACTGGGAG-TGAACTCCGCATG
31994352 C
1 C
31994353 CTATGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 4 0.17
26 20 0.83
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAGTGAACTCCGCATG
Found at i:31994685 original size:170 final size:170
Alignment explanation
Indices: 31994372--31994687 Score: 390
Period size: 170 Copynumber: 1.9 Consensus size: 170
31994362 CCCATGAAAC
* * *
31994372 GAGCGTGCGGGCACTCAACCGGCTGGAGAGGCATAATGCGCAAGTCGAGGATCAGCCCGATCCCC
1 GAGCGTGCGGGCACTCAACCGACGGGAGAGGCAGAATGCGCAAGTCGAGGATCAGCCCGATCCCC
* * * *
31994437 CTCTGCATGCTATCGATCCCACTATCGGTCCTACTACCACAACCCTTGATCCGGTTGGGGCTTAG
66 CTCTGCATGCTATCGATCCCACTATCGGTCCTACTACCACAACCCTCGATCCGATTGGAGCTGAG
31994502 AAATGGGATGAACTCCATATACCTAAGCCAACCCACGAAT
131 AAATGGGATGAACTCCATATACCTAAGCCAACCCACGAAT
* * * *
31994542 GAGCGTGCGGGCACTCAACCGACGGGAGAGGTAGAATGCGCAAGCTTG-GGATCGGCCCGGTCCC
1 GAGCGTGCGGGCACTCAACCGACGGGAGAGGCAGAATGCGCAAG-TCGAGGATCAGCCCGATCCC
* * * * * *
31994606 CC-CTTGCGTGCTGTCGATCCTACTA-CTGGTCCTCCTACCAGAACCCTCGATCCGATCT-GATC
65 CCTC-TGCATGCTATCGATCCCACTATC-GGTCCTACTACCACAACCCTCGATCCGAT-TGGAGC
*
31994668 TGAGACA-GGGAATGAACTCC
127 TGAGAAATGGG-ATGAACTCC
31994688 GTATGCTTAG
Statistics
Matches: 123, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
169 5 0.04
170 115 0.93
171 3 0.02
ACGTcount: A:0.23, C:0.31, G:0.26, T:0.19
Consensus pattern (170 bp):
GAGCGTGCGGGCACTCAACCGACGGGAGAGGCAGAATGCGCAAGTCGAGGATCAGCCCGATCCCC
CTCTGCATGCTATCGATCCCACTATCGGTCCTACTACCACAACCCTCGATCCGATTGGAGCTGAG
AAATGGGATGAACTCCATATACCTAAGCCAACCCACGAAT
Found at i:31994699 original size:26 final size:26
Alignment explanation
Indices: 31994670--31994719 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
31994660 ATCTGATCTG
31994670 AGACAGGGAATGAACTCCGTATGCTT
1 AGACAGGGAATGAACTCCGTATGCTT
* * *
31994696 AGACATGGAATGAATTGCGTATGC
1 AGACAGGGAATGAACTCCGTATGC
31994720 CTAAGCCTAC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.32, C:0.16, G:0.28, T:0.24
Consensus pattern (26 bp):
AGACAGGGAATGAACTCCGTATGCTT
Found at i:31994925 original size:873 final size:870
Alignment explanation
Indices: 31993120--31995249 Score: 2449
Period size: 873 Copynumber: 2.4 Consensus size: 870
31993110 ATGAAACGAG
*
31993120 CGTATGCCTAAGTCAACCCATGAAACAAGCGTACGGGCGCTGAGCC-AGTCGGAGAGGCATAATG
1 CGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCGCTGAGCCGA-TCGGAGAGGCATAAT-
* * * * * * * * *
31993184 T-GCAAGTCAGGGATTGACCTGATCCCGCTTTACGTGTTGT-GATCCCACTGCCACAACCCTCAG
64 TCGCAAGCCAGGGATCGGCCCGATCCCCCTCTACGTGCTGTCGGTCCCGCTGCCACAACCCTCAG
* * *
31993247 TCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGTGTGC
129 TCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGC
* * * * * * ** * *
31993312 GGGCACTTAGCTGACTGGAGAGGCAGAATGCGGAAGTTAGCGATCGGTCGATCCCCCTTGCGTGC
194 GGGCGCTCAGCCGACAGGAGAGGAAGAATGCGCAAGTCGGGGATCGCTCGATCCCCC-TGCGTGC
* * * *
31993377 TA-TCGATCCTGCTGCCACAACCCTCAGTCCGATCCAATCTTAGACTGGCAATGAAGTCTGTATG
258 -AGTCGATCCTGCTGTCACAACCCTC-GTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATG
* * **
31993441 CTTAGACTGGGGAGGAACTTCGTATGCCTAAGAT-AACCCACGAAACGAACGTGCGGGTGCTCAA
321 CTTAGACTGGGGATGAACTTCGTATGCCTAAG-TCAACCCACGAAACGAGCGTGCGGGCACTCAA
* * * * * *
31993505 CCGGCCAAAAGGCCAGTCAGAGAGGCATAATGCGCAAGCCGGGGATTAGCACGGTCCCTCTTTGT
385 -C--CC---AGGCCA-TCAGAGAGGCATAATGCGCAAGCCGAGGATCAGCACGATCCCCCTCTGC
* * * * ** * ** *
31993570 GTGCTACCGATCCCGCTGCCGGTCTTGGTGCCGTAACCCTCGATCCGACGAGGGCTTAGACATGG
443 ATGCTACCGATCCCACTACCGGTCCTACTACCACAACCCTCGATCCGACGAGGGCTTAGAAATGG
* * * **
31993635 AATGAACTCCGTATGCCTAAGAAAACCCACGAAATGAGCGTACGGGCGCTCAGTCGACCGGAGAG
508 AATGAACTCCATATACCTAAGAAAACCCACGAAATGAGCGTACGGGCACTCAACCGACCGGAGAG
31993700 GCAGAATGCGCAAGCCGGGGATCAGCCCGATCCCCCCTGCGTGCTGTCGATCCTACTACTGGTCC
573 GCAGAATGCGCAAGCCGGGGATCAGCCCGATCCCCCCTGCGTGCTGTCGATCCTACTACTGGTCC
* * * * *
31993765 TGCTGCCGCAACCCTCGATCCAGTCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACATG
638 TCCTACCGCAACCCTCGATCCAGTCTGATCTGAGACAGGGAATGAACTCCGTATGCTTAGACATG
* * * *
31993830 GAATGAACTCCATATGCCTAAGCCAACCCATGAAATGAGCATGTAGGCACTCAGTCGATCTAAGA
703 GAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAACATGCAGGCACTCAGTCGATCGAAGA
* * * * * **
31993895 AGCAGAATGCGCAAGTCGGGGTCGACCCGGTCCCCCTCTGCGTGCTGTCGATCTTGCTGTCGCAA
768 AGCAGAATGCGCAAGCCGGGGCCGACCCGATCCCCCTCTGCGTGCTGTCAATCCTGCTACCGCAA
*
31993960 CCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTC
833 CCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTC
* * ** * *
31993998 CGTATGCCTAAGTCAACCCACGAAGCGAGCGTTTGGGCGCTGAGCAGGTCGGAGAGGCATAATTC
1 CGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCGCTGAGCCGATCGGAGAGGCATAATTC
* * *
31994063 GCAAGCCAGAGATCGGCCCGATCCCCCTCTGCGTGCTGTCGGTCCCGTTGCCACAACCCTCAGTC
66 GCAAGCCAGGGATCGGCCCGATCCCCCTCTACGTGCTGTCGGTCCCGCTGCCACAACCCTCAGTC
* *
31994128 CGGCTGGGGCTTAGTCATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGGGG
131 CGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGG
* *
31994193 GCGCTCAGCCGACAGGAGAGGTAGAATGCGTAAGTCGGGGATCAGCTCGATCCCCACTGCGTGCA
196 GCGCTCAGCCGACAGGAGAGGAAGAATGCGCAAGTCGGGGATC-GCTCGATCCCC-CTGCGTGCA
* * *
31994258 GTCGATCCTGCTGTCACAACCCTTGATCTGATCTGATCCGATCTTAGACTGGGAGTGAACTCCGT
259 GTCGATCCTGCTGTCACAACCC----TC-G-TCCGATCCAATCTTAGACTGGGAATGAACTCCGT
* * * *
31994323 ATGCTTAGACTGGAGATGAACTTCGCATGCCTATGTCAACCCATGAAACGAGCGTGCGGGCACTC
318 ATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTC
* * *
31994388 AA-CC-GG-C-T-GGAGAGGCATAATGCGCAAGTCGAGGATCAGCCCGATCCCCCTCTGCATGCT
383 AACCCAGGCCATCAGAGAGGCATAATGCGCAAGCCGAGGATCAGCACGATCCCCCTCTGCATGCT
* * * ** *
31994448 ATCGATCCCACTATCGGTCCTACTACCACAACCCTTGATCCGGTTG-GGGCTTAGAAATGGGATG
448 ACCGATCCCACTACCGGTCCTACTACCACAACCCTCGATCC-GACGAGGGCTTAGAAATGGAATG
** * * *
31994512 AACTCCATATACCTAAGCCAACCCACG-AATGAGCGTGCGGGCACTCAACCGACGGGAGAGGTAG
512 AACTCCATATACCTAAGAAAACCCACGAAATGAGCGTACGGGCACTCAACCGACCGGAGAGGCAG
** * *
31994576 AATGCGCAAGCTTGGGATCGGCCCGGTCCCCCCTTGCGTGCTGTCGATCCTACTACTGGTCCTCC
577 AATGCGCAAGCCGGGGATCAGCCCGATCCCCCC-TGCGTGCTGTCGATCCTACTACTGGTCCTCC
31994641 TACCAG-AACCCTCGATCC-GATCTGATCTGAGACAGGGAATGAACTCCGTATGCTTAGACATGG
641 TACC-GCAACCCTCGATCCAG-TCTGATCTGAGACAGGGAATGAACTCCGTATGCTTAGACATGG
* * * * * * * * * * * *
31994704 AATGAATTGCGTATGCCTAAGCCTACCCACGAAATTAACGTGCGGGCGCTTAGTCGGTCGGAGAG
704 AATGAACTCCATATGCCTAAGCCAACCCACGAAATGAACATGCAGGCACTCAGTCGATCGAAGAA
* ** * * *
31994769 GTAGAATTTGCAAGCCGGGGACCGGCTCGATCCCCC-CTGCGTGCTGTCAATCCTGCTACCGTAA
769 GCAGAATGCGCAAGCCGGGG-CCGACCCGATCCCCCTCTGCGTGCTGTCAATCCTGCTACCGCAA
* *
31994833 CCCTTGATCTGATCTGATCTTAGACTGGGAATGAACTC
833 CCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTC
* * *
31994871 CGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTGAGCCGATCGGAGAGGCATAATAC
1 CGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCGCTGAGCCGATCGGAGAGGCATAATTC
** * * * * ** * *
31994936 GCAAGCTGGGGATCAGTCCGATCCTCCTCTATGTGCTACCGGTACCGCTGCCACAACCCTCGGTC
66 GCAAGCCAGGGATCGGCCCGATCCCCCTCTACGTGCTGTCGGTCCCGCTGCCACAACCCTCAGTC
* ** *
31995001 CGGCTGGGGCCTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATAAAACGGGCGTGCAG
131 CGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGG
* * * * * * *
31995066 GTGCTCAGTCGACCGGAGAGGAAGAATGCGCAAGCCGGGGATCGGACT-GGTCCCCCCTACGTAC
196 GCGCTCAGCCGACAGGAGAGGAAGAATGCGCAAGTCGGGGATC-G-CTCGAT-CCCCCTGCGTGC
* * *
31995130 TGTCGATCCTGCTGTCGCAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCATATGC
258 AGTCGATCCTGCTGTCACAACCCTC-GTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGC
* * *
31995195 TTAGATTGGGGATGAAC-TCTGTATGCCTAAGTCAACCCACAAAACGAGCATGCGG
322 TTAGACTGGGGATGAACTTC-GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
31995250 ATGCTCAGCC
Statistics
Matches: 1055, Mismatches: 177, Indels: 50
0.82 0.14 0.04
Matches are distributed among these distances:
867 2 0.00
868 79 0.07
869 3 0.00
872 61 0.06
873 554 0.53
874 21 0.02
876 1 0.00
877 3 0.00
878 85 0.08
879 117 0.11
880 37 0.04
881 3 0.00
884 4 0.00
885 85 0.08
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.21
Consensus pattern (870 bp):
CGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCGCTGAGCCGATCGGAGAGGCATAATTC
GCAAGCCAGGGATCGGCCCGATCCCCCTCTACGTGCTGTCGGTCCCGCTGCCACAACCCTCAGTC
CGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGG
GCGCTCAGCCGACAGGAGAGGAAGAATGCGCAAGTCGGGGATCGCTCGATCCCCCTGCGTGCAGT
CGATCCTGCTGTCACAACCCTCGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAG
ACTGGGGATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAACCCAGG
CCATCAGAGAGGCATAATGCGCAAGCCGAGGATCAGCACGATCCCCCTCTGCATGCTACCGATCC
CACTACCGGTCCTACTACCACAACCCTCGATCCGACGAGGGCTTAGAAATGGAATGAACTCCATA
TACCTAAGAAAACCCACGAAATGAGCGTACGGGCACTCAACCGACCGGAGAGGCAGAATGCGCAA
GCCGGGGATCAGCCCGATCCCCCCTGCGTGCTGTCGATCCTACTACTGGTCCTCCTACCGCAACC
CTCGATCCAGTCTGATCTGAGACAGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCAT
ATGCCTAAGCCAACCCACGAAATGAACATGCAGGCACTCAGTCGATCGAAGAAGCAGAATGCGCA
AGCCGGGGCCGACCCGATCCCCCTCTGCGTGCTGTCAATCCTGCTACCGCAACCCTCGATCCGAT
CTGATCTTAGACTGGGAATGAACTC
Found at i:31997210 original size:159 final size:158
Alignment explanation
Indices: 31996782--31997198 Score: 429
Period size: 159 Copynumber: 2.6 Consensus size: 158
31996772 AACTTCGTAT
* * *
31996782 GCTTAGACATGGAATTAACTCCGTATGCCTATGCCAACCCACGAAACGAGCGTGCGGGC-ACTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGA-TCA
* * * *
31996846 GCCAGCTGGAGAGGCAGAATGCGCAAGCCAGGGACCGACCCTG-TCCCCCCTATGTGCTGTCGAT
65 GCCAGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCC-GATCCCCCCTACGTGCTGCCGAT
** *
31996910 CTTGCTACTGAAACCCTCAGTCTGGTCTGA
129 CCCGCTACTCAAACCCTCAGTCTGGTCTGA
* * * * * * * *
31996940 TCTTAGAC-TAGGAATGAACTTCATATGCCTAAGTCAACACATGAAACGAGCGTGCGGGTGTTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGATCA
* *
31997004 GCCAGCCGGAGAGGCATAATGCGCACA-CC-GAGGATCGACCCGATCCCCCTCTGCGTGCTGCC-
65 GCCAGCCGGAGAGGCAGAATGCGCA-AGCCAG-GGATCGACCCGATCCCCC-CTACGTGCTGCCG
* * *
31997066 AGTCCCGCTGC-CACAACCCTCGGTCTGG-CTGGG
127 A-TCCCGCTACTCA-AACCCTCAGTCTGGTCT-GA
* * * *
31997099 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGATACGGGCATACGGGCGATCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGATCAG
*
31997164 CC-GACCGGAGAGGCAGAATGCGTAAGCCAGGGATC
66 CCAG-CCGGAGAGGCAGAATGCGCAAGCCAGGGATC
31997199 AGCTCGATCC
Statistics
Matches: 209, Mismatches: 37, Indels: 25
0.77 0.14 0.09
Matches are distributed among these distances:
157 3 0.01
158 96 0.46
159 108 0.52
160 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGATCAG
CCAGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCCTACGTGCTGCCGATCC
CGCTACTCAAACCCTCAGTCTGGTCTGA
Found at i:31997286 original size:26 final size:26
Alignment explanation
Indices: 31997257--31997309 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
31997247 TTGATCTGAT
*
31997257 CTTAGACTGGGGATGAAC-TCTGTATG
1 CTTAGACTGAGGATGAACTTC-GTATG
*
31997283 CTTAGATTGAGGATGAACTTCGTATG
1 CTTAGACTGAGGATGAACTTCGTATG
31997309 C
1 C
31997310 CTAAGGCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGAGGATGAACTTCGTATG
Found at i:31998199 original size:26 final size:26
Alignment explanation
Indices: 31998163--31998215 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
31998153 CTAGTCCAAC
*
31998163 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
31998189 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
31998215 C
1 C
31998216 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:31998932 original size:26 final size:26
Alignment explanation
Indices: 31998894--31998946 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
31998884 GGCTCAAACT
*
31998894 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
31998920 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
31998946 C
1 C
31998947 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:31999114 original size:26 final size:26
Alignment explanation
Indices: 31999078--31999130 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
31999068 CCAGTCCAAC
*
31999078 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
31999104 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
31999130 C
1 C
31999131 CTAAGTCAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:31999373 original size:913 final size:910
Alignment explanation
Indices: 31997257--31999731 Score: 3778
Period size: 913 Copynumber: 2.7 Consensus size: 910
31997247 TTGATCTGAT
* * * * * * *
31997257 CTTAGACTGGGGATGAACTCTGTATGCTTAGATTGAGGATGAACTTCGTATGCCTAAGGCAACCC
1 CTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCC
* * **
31997322 ATGAAACAAGTGTGCGGACGCTCAG-CTGACCAGAGAGGCAGGATGCGCAAATCGGGGATCGAAC
66 ATGAAACGAGCGTGC-GACGCTCAGTC-GACCAGAGAGGCAGGATGCGCAAGCCGGGGATCGAAC
*
31997386 GGGTGGTAGGTGGGTTCAAGCACATCTTCATATTTCTGCCATGCAAATGCCATTTTTATGGCTTG
129 GGGTGGTAGGTGGGTTCAAGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTG
* * * *
31997451 TAAATTCATACAATGGTCCTCTATGCCTTCGA-GTGAAGTTTCGTGGCAAGATGACCCGTTTTCT
194 TAAATTCATACAATGGTCCCCTACGCCTTC-ATGTGAAGTTTCATGGCAAGACGACCCGTTTTCT
* **
31997515 ATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTAGAAAGCGTTT
258 ATTTTTCATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTTAGAAAGAATTT
*
31997580 TGTCCCCAAATTTGGTAGAGGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAGTTCAGCTAA
323 TGTCCCCAAATTTGGTAGAGGTGATCCTTGTA-TTTTTTTGGCATGCACAAAAAAATTCAGCTAA
* * * * * * ** *
31997645 AAAATTGAAGTGGAGAAGATTTTGTGACCATTTGAAAAATGTGTCTGCATTTCAGACAGTTTAAT
387 AAACTCGAAGTGGAGAAGATTTTGTGAACGTTTCAAAAAAGTGTCCCCATTTCAGACACTTTAAT
*
31997710 GGCTACT-GACAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTT
452 GGCTACTAG-CAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
31997774 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCA-CACATCATGTGCGTG
516 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCAGCACATCATGTGC--G
* * *
31997838 CAC-CCCCTGG-CCCCCCAATCGCCGAAACCCCTATTGCCGCCGGTTAGGCCCTCCGGCGATGCT
579 CACACCCCTGGCCCCCCCAATCGCCGAAACCCC-AATGCCACCGGTTAGGCTCTCCGGCGATGCT
*
31997901 CCGAC---G---ATGTTGCCCTGAGCGAAAAAAATGTGGCACCAGCACATGCCCAAGCCCAGCAT
643 CCGACGATGCTCATGTTGCCCCGAGCGAAAAAAATGTGGCACCAGCACATGCCCAAGCCCAGCAT
31997960 GTGCACCGTGGCTCAAACTCTTAGACTGGGAATGAACTCCTTATGCTTAGAAATGGAATGAACTC
708 GTGCACCGTGGCTCAAACTCTTAGACTGGGAATGAACTCCTTATGCTTAGAAATGGAATGAACTC
* ** * * * * *** *
31998025 TGTATGCCTAAGCCTGCCCACGAAATGAGCGTGCGGGCCGCTCAATCGGTCGGAGAGGTAGAATG
773 CGTATGCCTAAGCCAACCCACAAAACGAGCGTGAGGGCCGCTCAACCAACCGGAGAGGCAGAATG
* *
31998090 CACAAGCCGAGGATCGACTCGATCCCCCTACATGCTGCCGATCCTGCTGTCGCAACACTCGGTCT
838 CACAAGCCGAGGATCGACCCGATCCCCCTACATGCTGCCGATCCTGCTGTCGCAACACTCGGTCC
31998155 AGTCCAAC
903 AGTCCAAC
31998163 CTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCC
1 CTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCC
* *
31998228 ATGAAATGAGCATGCGGACGCTCAGTCGACCAGAGAGGCAGGATGCGCAAGCCGGGGATCGAACG
66 ATGAAACGAGCGTGC-GACGCTCAGTCGACCAGAGAGGCAGGATGCGCAAGCCGGGGATCGAACG
31998293 GGTGGTAGGTGGGTTCAAGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGT
130 GGTGGTAGGTGGGTTCAAGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGT
31998358 AAATTCATACAATGGTCCCCTACGCCTTCATGTGAAGTTTCATGGCAAGACGACCCGTTTTCTAT
195 AAATTCATACAATGGTCCCCTACGCCTTCATGTGAAGTTTCATGGCAAGACGACCCGTTTTCTAT
* *
31998423 TTTTCATGATTTTTGAAACTTTTTACGGTTTAGGATTTTTTTAAATTTTTTTAGAAAGAATTTTG
260 TTTTCATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTTAGAAAGAATTTTG
31998488 TCCCCAAATTTGGTAGAGGTGATCCTTGTATTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAA
325 TCCCCAAATTTGGTAGAGGTGATCCTTGTATTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAA
31998553 CTCGAAGTGGAGAAGATTTTGTGAACGTTTCAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
390 CTCGAAGTGGAGAAGATTTTGTGAACGTTTCAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
*
31998618 TACTAGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTCGAT
455 TACTAGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
* * *
31998683 GAGGGATAGGGGGCCAATATAAGAGCTAAGTACCAGCACCCA-CAGCACATCATGTGCACACACC
520 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCAGCACATCATGTGCGCACACC
* * * * *
31998747 TCTGGCCCCCCCAATTGCCAAAACCCCAATGCCACCAGTTAGGCTCTCCGGTGATGCTCCGACGA
585 CCTGGCCCCCCCAATCGCCGAAACCCCAATGCCACCGGTTAGGCTCTCCGGCGATGCTCCGACGA
* * * *
31998812 TGCTCCAGTGATGGTGCCCCGGGCGAAAAAAATGTGGCACCAGCACATGCTCGAGCCTAGCATGT
650 TGCT-CA-TG-T--TGCCCCGAGCGAAAAAAATGTGGCACCAGCACATGCCCAAGCCCAGCATGT
* *
31998877 GCACCTTGGCTCAAACTCTTAGACTGGGAATGAACT-CTGTATGCTTAGACATGGAATGAACTCC
710 GCACCGTGGCTCAAACTCTTAGACTGGGAATGAACTCCT-TATGCTTAGAAATGGAATGAACTCC
* * **
31998941 GTATGCCTAAGCCAACCCACAAAACGAGTGTGAGGG-TGCTCGGCCAACCGGAGAGGCAGAATGC
774 GTATGCCTAAGCCAACCCACAAAACGAGCGTGAGGGCCGCTCAACCAACCGGAGAGGCAGAATGC
** * * * * * * *
31999005 GGAAGTCGGGGATCGACCCGGTCCCCCCTGCATTCTGCCGATCCTGCTGTCGCAACCCTTGGTCC
839 ACAAGCCGAGGATCGACCCGAT-CCCCCTACATGCTGCCGATCCTGCTGTCGCAACACTCGGTCC
31999070 AGTCCAAC
903 AGTCCAAC
*
31999078 CTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAATCC
1 CTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCC
* * *
31999143 ACGAAACGGGCGTGC-ACGCTCAGTCGACCAGAGAGGCAGGATGCGCAAGCCGGGGATCGAATGG
66 ATGAAACGAGCGTGCGACGCTCAGTCGACCAGAGAGGCAGGATGCGCAAGCCGGGGATCGAACGG
31999207 GTGGTAGGTGGGTTCAAGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTA
131 GTGGTAGGTGGGTTCAAGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTA
31999272 AATTCATACAATGGTCCCCTACGCCTTCATGTGAAGTTTCATGGCAAGACGACCCGTTTTCTATT
196 AATTCATACAATGGTCCCCTACGCCTTCATGTGAAGTTTCATGGCAAGACGACCCGTTTTCTATT
*
31999337 TTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTTAGAAAGAATTTTGT
261 TTTCATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTTAGAAAGAATTTTGT
* *
31999402 CCCTAAATTTGGTAGAGGTGATCCTTGTATTTTTTTGGCATGCACAAAAAAATTCACCTAAAAAC
326 CCCCAAATTTGGTAGAGGTGATCCTTGTATTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAAC
31999467 TCGAAGTGGAGAAGATTTTGTGAACGTTTCAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
391 TCGAAGTGGAGAAGATTTTGTGAACGTTTCAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
*
31999532 ACTAGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGACGTTTGATG
456 ACTAGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
* * * * *
31999597 AGGGATATGGGGCCAACATAAGGGCGAAGTACCATCACCCATC-GCACATCATATGCGCACACCC
521 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCAGCACATCATGTGCGCACA-CC
** * * * * *
31999661 CCCAGCCCCCCCAATCGTCGGAACCCCCAATGCCACCGGTTAGGCTCTCCGACGATGCTCTGATG
585 CCTGGCCCCCCCAATCG-CCGAAACCCCAATGCCACCGGTTAGGCTCTCCGGCGATGCTCCGACG
31999726 ATGCTC
649 ATGCTC
31999732 TGGTGATGCT
Statistics
Matches: 1436, Mismatches: 111, Indels: 36
0.91 0.07 0.02
Matches are distributed among these distances:
903 3 0.00
904 39 0.03
905 223 0.16
906 329 0.23
907 2 0.00
911 1 0.00
912 2 0.00
913 484 0.34
914 55 0.04
915 298 0.21
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (910 bp):
CTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCC
ATGAAACGAGCGTGCGACGCTCAGTCGACCAGAGAGGCAGGATGCGCAAGCCGGGGATCGAACGG
GTGGTAGGTGGGTTCAAGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTA
AATTCATACAATGGTCCCCTACGCCTTCATGTGAAGTTTCATGGCAAGACGACCCGTTTTCTATT
TTTCATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTTAGAAAGAATTTTGT
CCCCAAATTTGGTAGAGGTGATCCTTGTATTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAAC
TCGAAGTGGAGAAGATTTTGTGAACGTTTCAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
ACTAGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCAGCACATCATGTGCGCACACCC
CTGGCCCCCCCAATCGCCGAAACCCCAATGCCACCGGTTAGGCTCTCCGGCGATGCTCCGACGAT
GCTCATGTTGCCCCGAGCGAAAAAAATGTGGCACCAGCACATGCCCAAGCCCAGCATGTGCACCG
TGGCTCAAACTCTTAGACTGGGAATGAACTCCTTATGCTTAGAAATGGAATGAACTCCGTATGCC
TAAGCCAACCCACAAAACGAGCGTGAGGGCCGCTCAACCAACCGGAGAGGCAGAATGCACAAGCC
GAGGATCGACCCGATCCCCCTACATGCTGCCGATCCTGCTGTCGCAACACTCGGTCCAGTCCAAC
Found at i:31999730 original size:11 final size:11
Alignment explanation
Indices: 31999714--31999792 Score: 104
Period size: 11 Copynumber: 7.2 Consensus size: 11
31999704 GCTCTCCGAC
* *
31999714 GATGCTCTGAT
1 GATGCTCCGGT
*
31999725 GATGCTCTGGT
1 GATGCTCCGGT
* *
31999736 GATGCTCTGAT
1 GATGCTCCGGT
31999747 GATGCTCCGGT
1 GATGCTCCGGT
31999758 GATGCTCCGGT
1 GATGCTCCGGT
31999769 GATGCTCCGGT
1 GATGCTCCGGT
*
31999780 GATGCTCCAGT
1 GATGCTCCGGT
31999791 GA
1 GA
31999793 AAAAAATGCA
Statistics
Matches: 63, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
11 63 1.00
ACGTcount: A:0.14, C:0.23, G:0.33, T:0.30
Consensus pattern (11 bp):
GATGCTCCGGT
Found at i:31999740 original size:22 final size:22
Alignment explanation
Indices: 31999714--31999786 Score: 119
Period size: 22 Copynumber: 3.3 Consensus size: 22
31999704 GCTCTCCGAC
*
31999714 GATGCTCTGATGATGCTCTGGT
1 GATGCTCTGATGATGCTCCGGT
31999736 GATGCTCTGATGATGCTCCGGT
1 GATGCTCTGATGATGCTCCGGT
* *
31999758 GATGCTCCGGTGATGCTCCGGT
1 GATGCTCTGATGATGCTCCGGT
31999780 GATGCTC
1 GATGCTC
31999787 CAGTGAAAAA
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 48 1.00
ACGTcount: A:0.12, C:0.23, G:0.33, T:0.32
Consensus pattern (22 bp):
GATGCTCTGATGATGCTCCGGT
Found at i:31999887 original size:26 final size:26
Alignment explanation
Indices: 31999849--31999901 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
31999839 GGCTTAAAAT
**
31999849 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACACGGAATGAACTCCATATG
*
31999875 CTTAGACACGGAATGAACTCCGTATG
1 CTTAGACACGGAATGAACTCCATATG
31999901 C
1 C
31999902 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACACGGAATGAACTCCATATG
Found at i:32000392 original size:26 final size:26
Alignment explanation
Indices: 32000356--32000408 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
32000346 CCGGTTCGAT
*
32000356 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
32000382 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
32000408 C
1 C
32000409 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:32000901 original size:26 final size:26
Alignment explanation
Indices: 32000872--32000924 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
32000862 CCGATCCGAT
*
32000872 CTTAGAGTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
32000898 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
32000924 C
1 C
32000925 CTAAGTCAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:32001588 original size:26 final size:26
Alignment explanation
Indices: 32001550--32001600 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
32001540 GGCTCAAACT
32001550 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
32001576 CTTAGACAT-GGAATGAACTCCGTAT
1 CTTAGAC-TGGGAATGAACTCCGTAT
32001601 ACCTAAGCCA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Done.