Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 349 of 402
Found at i:32001911 original size:158 final size:158
Alignment explanation
Indices: 32001575--32001919 Score: 363
Period size: 159 Copynumber: 2.2 Consensus size: 158
32001565 AACTCCGTAT
* * * *
32001575 GCTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATAAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTCCGGGCACTCAG
* * ** * *
32001640 CCAATCGGAGAGGCAGAATGCGCAAGCTGGGGATCAGCCCGATCCCCCTTTGCGTGCTGCCGATC
66 CCAACCGAAGAGGCAGAATGCGCAAGCCAGAGATCAGCCCGATCCCCC-TTACGTGCTGCCGATC
* * * * *
32001705 CCGTTGCCACAACCCTCGATATGACTGGG
130 CCATTGCCACAACCCTCGACACGACTCGA
* * * * **
32001734 GCTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCCATGCAACGGGCGTCCGGGTGCTCAG
1 GCTTAGACATGGAATAAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTCCGGGCACTCAG
* * * *
32001799 CCGACCGAAGAGGTAGAATGCGCAAGCCAGAGATCGGCCC-AGTCCACCC-TACGTGCTGCTGAT
66 CCAACCGAAGAGGCAGAATGCGCAAGCCAGAGATCAGCCCGA-TCC-CCCTTACGTGCTGCCGAT
* * * *
32001862 CCTATTGCCGCAACCCTCGACCCGATTCGA
129 CCCATTGCCACAACCCTCGACACGACTCGA
*
32001892 TCTTAGAC-TGGGAATAAACTCCATATGC
1 GCTTAGACAT-GGAATAAACTCCATATGC
32001920 TTAGACTGGG
Statistics
Matches: 153, Mismatches: 30, Indels: 7
0.81 0.16 0.04
Matches are distributed among these distances:
157 1 0.01
158 58 0.38
159 91 0.59
160 3 0.02
ACGTcount: A:0.25, C:0.32, G:0.25, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATAAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTCCGGGCACTCAG
CCAACCGAAGAGGCAGAATGCGCAAGCCAGAGATCAGCCCGATCCCCCTTACGTGCTGCCGATCC
CATTGCCACAACCCTCGACACGACTCGA
Found at i:32001929 original size:26 final size:26
Alignment explanation
Indices: 32001893--32001971 Score: 124
Period size: 26 Copynumber: 3.0 Consensus size: 26
32001883 CCGATTCGAT
* *
32001893 CTTAGACTGGGAATAAACTCCATATG
1 CTTAGACTGGGAATGAACTCCGTATG
32001919 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
32001945 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
32001971 C
1 C
32001972 CTAAGCCAAC
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
26 49 0.98
27 1 0.02
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:32002247 original size:369 final size:368
Alignment explanation
Indices: 32001550--32002247 Score: 857
Period size: 369 Copynumber: 1.9 Consensus size: 368
32001540 GGCTCAAACT
32001550 CTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCC
1 CTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCC
* * *
32001615 ACGAAACGAGCGTGCGGGCACTCAGCCAATCGGAGAGGCAGAATGCGCAAGCTGGGGATCAGCCC
66 ACAAAACGAGCGTACGGGCACTCAGCCAACCGGAGAGGCAGAATGCGCAAGCTGGGGATCAGCCC
* * *
32001680 GATCCCCCTTTGCGTGCTGCCGATCCCGTTGCCACAACCCTCGATATGACTGGGGCTTAGACATG
131 GATCCCCC-TTGCGTGCTGCCGATCCCGCTACCACAACCCTCGATATGACTGGAGCTTAGACATG
*** * * *
32001745 GAATAAACTCCCTATGCCTAAGCCAACCCATGCAACGGGCGTCCGGGTGCTCAGCCGACCGAAGA
195 GAATAAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTCAGGGTGCTCAACCGACCGAAGA
* * * * * **
32001810 GGTAGAATGCGCAAGCCAGAGATCGGCCCAGTCCACCCTACGTGCTGCTGATCCTATTGCCGCAA
260 GGCAGAATGCACAAGCCAGAGATCAGCCCAGTCCACCCTACGTGCTGCTGATCCCACTGCAACAA
32001875 CCCTCGACCCGATTCGATCTTAGACTGGGAATAAACTCCATATG
325 CCCTCGACCCGATTCGATCTTAGACTGGGAATAAACTCCATATG
*
32001919 CTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCC
1 CTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCC
* * * * * *
32001984 ACAAAATGAGCGTACGGGCGCTCAGCCGACCGGAGAGGCAGAATGTGCAAGTTGGGGATCGGCCC
66 ACAAAACGAGCGTACGGGCACTCAGCCAACCGGAGAGGCAGAATGCGCAAGCTGGGGATCAGCCC
* * * * * *
32002049 GATCCCTCC-TGCGTGCTGTCGATCCTGCTACCACAACCCTC-AGTCTGGTCT-GATCTTAGA-T
131 GATCCC-CCTTGCGTGCTGCCGATCCCGCTACCACAACCCTCGA-TAT-GACTGGAGCTTAGACA
* * ** * * ** *
32002110 TGGGAATGAACTCCGTATGCCTAAGTTAACCCACAAAACGAGCGTGAGGGTGCTGAACCGGTCGG
193 T-GGAATAAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTCAGGGTGCTCAACCGACCGA
* * * * * * * *
32002175 AGAGGCATAATGCACAAGCCAGGGATTAGCCCGGTCCCCCTCTGCGTGCTG-TCGGTCCCGCTGC
257 AGAGGCAGAATGCACAAGCCAGAGATCAGCCCAGTCCACC-CTACGTGCTGCT-GATCCCACTGC
32002239 AACAACCCT
320 AACAACCCT
32002248 TGGTCCGATT
Statistics
Matches: 274, Mismatches: 49, Indels: 12
0.82 0.15 0.04
Matches are distributed among these distances:
367 2 0.01
368 118 0.43
369 152 0.55
370 2 0.01
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (368 bp):
CTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCC
ACAAAACGAGCGTACGGGCACTCAGCCAACCGGAGAGGCAGAATGCGCAAGCTGGGGATCAGCCC
GATCCCCCTTGCGTGCTGCCGATCCCGCTACCACAACCCTCGATATGACTGGAGCTTAGACATGG
AATAAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTCAGGGTGCTCAACCGACCGAAGAG
GCAGAATGCACAAGCCAGAGATCAGCCCAGTCCACCCTACGTGCTGCTGATCCCACTGCAACAAC
CCTCGACCCGATTCGATCTTAGACTGGGAATAAACTCCATATG
Found at i:32002352 original size:159 final size:159
Alignment explanation
Indices: 32001944--32002446 Score: 485
Period size: 158 Copynumber: 3.2 Consensus size: 159
32001934 AACTCCGTAT
* * *
32001944 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTACGGGCGCTCAG
1 GCTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAG
* * ** ** * *
32002009 CCGACCGGAGAGGCAGAATGTGCAAGTTGGGGATCGGCCCGATCCCTC-CTGCGTGCTGTCGATC
66 CCGATCGGAGAGGCAGAATGTACAAGCCGGGGATTAGCCCGGTCCCCCTCTGCGTGCTGTCGATC
* * * *
32002073 CTGCTACCACAACCCTCAGTCTGGTCTGA
131 CCGCTACAACAACCCTCAGTCCGATCTGA
* ** * * *
32002102 TCTTAGA-TTGGGAATGAACTCCGTATGCCTAAGTTAACCCACAAAACGAGCGTGAGGGTGCTGA
1 GCTTAGACTT-GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCA
* * * * * *
32002166 ACCGGTCGGAGAGGCATAATGCACAAGCCAGGGATTAGCCCGGTCCCCCTCTGCGTGCTGTCGGT
65 GCCGATCGGAGAGGCAGAATGTACAAGCCGGGGATTAGCCCGGTCCCCCTCTGCGTGCTGTCGAT
* ** *
32002231 CCCGCTGCAACAACCCTTGGTCCGAT-TGGG
130 CCCGCTACAACAACCCTCAGTCCGATCT-GA
* * * * *
32002261 GCTTGGACTTGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCCTGCGGACGTTCAG
1 GCTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAG
* * * * *
32002326 CTGATCGGAGAGGCAGAATGTTCAAGCCGGGGA-TAGGCCTGGTCCCCCT-TGCATGCTGCCGAT
66 CCGATCGGAGAGGCAGAATGTACAAGCCGGGGATTA-GCCCGGTCCCCCTCTGCGTGCTGTCGAT
** ** * * *
32002389 CCTACTACCGCAACCCTCTGTCCGGTCCGA
130 CCCGCTACAACAACCCTCAGTCCGATCTGA
* * *
32002419 TCTTAGACTGGGAAAGAACTCCGTATGC
1 GCTTAGACTTGGAATGAACTCCGTATGC
32002447 TTAGACTGGG
Statistics
Matches: 271, Mismatches: 68, Indels: 12
0.77 0.19 0.03
Matches are distributed among these distances:
157 1 0.00
158 145 0.54
159 123 0.45
160 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (159 bp):
GCTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAG
CCGATCGGAGAGGCAGAATGTACAAGCCGGGGATTAGCCCGGTCCCCCTCTGCGTGCTGTCGATC
CCGCTACAACAACCCTCAGTCCGATCTGA
Found at i:32002449 original size:26 final size:26
Alignment explanation
Indices: 32002420--32002472 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
32002410 CCGGTCCGAT
32002420 CTTAGACTGGGAAAGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
* * *
32002446 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
32002472 C
1 C
32002473 CAAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCGTATG
Found at i:32002730 original size:11 final size:13
Alignment explanation
Indices: 32002712--32002743 Score: 50
Period size: 11 Copynumber: 2.6 Consensus size: 13
32002702 TTACGGTTCG
32002712 AGATTTTTTA-AA
1 AGATTTTTTAGAA
32002724 A-ATTTTTTAGAA
1 AGATTTTTTAGAA
32002736 AGATTTTT
1 AGATTTTT
32002744 GTCCCCAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 8 0.44
12 4 0.22
13 6 0.33
ACGTcount: A:0.38, C:0.00, G:0.09, T:0.53
Consensus pattern (13 bp):
AGATTTTTTAGAA
Found at i:32003708 original size:169 final size:170
Alignment explanation
Indices: 32003400--32003722 Score: 445
Period size: 169 Copynumber: 1.9 Consensus size: 170
32003390 AGGCATAATT
* * * * * **
32003400 CGCAAGTTGGGGATCGGCCCGATCCCCCTCTGCGTGCTGCTGGTCCCGCTGCCACAACCCTTGGT
1 CGCAAGCTGGGGATCGACCCGATCCCCCTCTGCGTGCTGCTGATCCCACTACCACAACCCTCAGT
* * *
32003465 CCAGCTGGGGCTTAGACATGAAATGAACTCCCTACGCCTAAGCAAACCCACGAAATGGGTGTGCG
66 CCAGCTGGGGCTTAGACATGAAATGAACTCCCTACGCCTAAGCAAACCCACGAAACGAGTGTACG
*
32003530 GGCGCTCAGCCAGCCGGAGAGGCAAAACTTCGGTAGAATG
131 GGCGCTCAGCCAGACGGAGAGGCAAAACTTCGGTAGAATG
*
32003570 CGCAAGCTGGGGATCGACCCGGTCCCCCT-TGCGTGCTG-TCGATCCCACTACCACAACCCTCAG
1 CGCAAGCTGGGGATCGACCCGATCCCCCTCTGCGTGCTGCT-GATCCCACTACCACAACCCTCAG
* * * * *
32003633 TCCAGCTGGGGCTTAGACATGGAAT-AACCTCCTTATGCCTAAGCCAACCCAGGAAACGAGTGTA
65 TCCAGCTGGGGCTTAGACATGAAATGAA-CTCCCTACGCCTAAGCAAACCCACGAAACGAGTGTA
*
32003697 CGGGTGCTCAGCCAGACGGAGAGGCA
129 CGGGCGCTCAGCCAGACGGAGAGGCA
32003723 GAATGTGCAA
Statistics
Matches: 133, Mismatches: 18, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
168 3 0.02
169 104 0.78
170 26 0.20
ACGTcount: A:0.23, C:0.32, G:0.28, T:0.17
Consensus pattern (170 bp):
CGCAAGCTGGGGATCGACCCGATCCCCCTCTGCGTGCTGCTGATCCCACTACCACAACCCTCAGT
CCAGCTGGGGCTTAGACATGAAATGAACTCCCTACGCCTAAGCAAACCCACGAAACGAGTGTACG
GGCGCTCAGCCAGACGGAGAGGCAAAACTTCGGTAGAATG
Found at i:32003831 original size:26 final size:26
Alignment explanation
Indices: 32003802--32003852 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
32003792 CCGGACTGAT
32003802 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* * * *
32003828 CTTAGATTGGGGATGAACTTCGTAT
1 CTTAGACTAGGAATGAACTCCGTAT
32003853 CCCTAAGTCA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.31
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:32004699 original size:26 final size:26
Alignment explanation
Indices: 32004670--32004722 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
32004660 CCAATCTGAT
*
32004670 CTTAGATTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCTGTATG
*
32004696 CTTAGACTAGGGATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCTGTATG
32004722 C
1 C
32004723 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCTGTATG
Found at i:32011616 original size:26 final size:26
Alignment explanation
Indices: 32011580--32011632 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
32011570 CCAGTTTGAT
*
32011580 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
32011606 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
32011632 C
1 C
32011633 CTAATCTCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:32012340 original size:26 final size:26
Alignment explanation
Indices: 32012302--32012354 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32012292 GGCTCAAAAT
32012302 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
32012328 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
32012354 C
1 C
32012355 CAAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:32012829 original size:26 final size:25
Alignment explanation
Indices: 32012800--32012878 Score: 88
Period size: 26 Copynumber: 3.0 Consensus size: 25
32012790 CCGGTCTGAT
32012800 CTTAGAATGGGAATGAACTCTGTATG
1 CTTAGAATGGG-ATGAACTCTGTATG
*
32012826 CTTAGATTAGGGATGAACT-TCGTATG
1 CTTAGAAT-GGGATGAACTCT-GTATG
* *
32012852 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGAAT-GGGATGAACTCTGTATG
32012878 C
1 C
32012879 CTAAGTCAAC
Statistics
Matches: 46, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
25 1 0.02
26 42 0.91
27 3 0.07
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (25 bp):
CTTAGAATGGGATGAACTCTGTATG
Found at i:32013798 original size:161 final size:158
Alignment explanation
Indices: 32013586--32014091 Score: 506
Period size: 160 Copynumber: 3.2 Consensus size: 158
32013576 GCTCCGTATG
* *
32013586 CTTAGACATGGAATGAACTCCGCATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCGAC
1 CTTAGACATGGAATGAACTCC-TATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCGAC
* * * * * * *
32013651 CAAGCCGGAGATGCAAAACGTGCAAGCCGGGGATCAACCCGGTCCCCCCTACGTGCTGCCGATCC
65 C-AGCCAGAGAGGCAAAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCTTGCGTGCTGCCGATCC
* * *
32013716 TGCTGCCGTAACCCTCGGTCCTGGTCTGAT
129 TGCTACCGCAACCCTCAGTCCTGGTCTGAT
* * *
32013746 CTTAGAC-TGGGAATGAACTCCATAATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCACT-G
1 CTTAGACAT-GGAATGAACTCC-T-ATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCG
* * * *
32013809 AGCCAGTCAAAGAGGCATAATGCGCAAGCCGGGGATTAGCCCGGGTCCCCCTTTGCGTGCTGCC-
63 A-CCAGCCAGAGAGGCAAAATGCGCAAGCCGGGGATCAGCCC-GGTCCCCC-TTGCGTGCTGCCG
* * **
32013873 AGTCCTGCTACCACAACCCTCAGT-TTGG-CTGGGG
125 A-TCCTGCTACCGCAACCCTCAGTCCTGGTCT-GAT
* * *
32013907 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATACGGGCACTCAAC
1 CTTAGACATGGAATGAACT-CCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCGAC
* * * * *
32013972 C-GACTAGAGAGGTAGAATGCGCAAGCTGGGGATCAGCCCGATCCCCCTTGCGTGCTGCCGATCC
65 CAG-CCAGAGAGGCAAAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCTTGCGTGCTGCCGATCC
* * *
32014036 TACTACCGCAACCCTCTGTCC-AGTCTGAT
129 TGCTACCGCAACCCTCAGTCCTGGTCTGAT
* *
32014065 CTAAGAC-TGGGAATGAACGCCGTATGC
1 CTTAGACAT-GGAATGAACTCC-TATGC
32014092 TTAGACTGGG
Statistics
Matches: 283, Mismatches: 47, Indels: 34
0.78 0.13 0.09
Matches are distributed among these distances:
157 3 0.01
158 53 0.19
159 12 0.04
160 116 0.41
161 68 0.24
162 31 0.11
ACGTcount: A:0.25, C:0.32, G:0.26, T:0.18
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCGACC
AGCCAGAGAGGCAAAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCTTGCGTGCTGCCGATCCTG
CTACCGCAACCCTCAGTCCTGGTCTGAT
Found at i:32014106 original size:26 final size:26
Alignment explanation
Indices: 32014068--32014117 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
32014058 GTCTGATCTA
32014068 AGACTGGGAATGAACGCCGTATGCTT
1 AGACTGGGAATGAACGCCGTATGCTT
* *
32014094 AGACTGGGGATGAACTCCGTATGC
1 AGACTGGGAATGAACGCCGTATGC
32014118 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.20, G:0.32, T:0.22
Consensus pattern (26 bp):
AGACTGGGAATGAACGCCGTATGCTT
Found at i:32014970 original size:25 final size:26
Alignment explanation
Indices: 32014922--32014973 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
32014912 TCCAGTCCAT
*
32014922 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGATTGGGAATGAACTACGTATG
32014948 CTTAGATTGGG-ATGAACTACGTATG
1 CTTAGATTGGGAATGAACTACGTATG
32014973 C
1 C
32014974 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 14 0.56
26 11 0.44
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.31
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTACGTATG
Found at i:32015666 original size:26 final size:26
Alignment explanation
Indices: 32015628--32015680 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
32015618 GGCTTAAAAT
32015628 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
32015654 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
32015680 C
1 C
32015681 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:32016006 original size:157 final size:159
Alignment explanation
Indices: 32015812--32016172 Score: 417
Period size: 157 Copynumber: 2.3 Consensus size: 159
32015802 TTGGTGCGAT
* * *
32015812 CTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAAC-GAGCGAGCGGGAGCTGA
1 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAG-GCGAGCGGGAGCTGA
* ** * * * * * *
32015875 GCTGGTCGAAGAGGCATAATGCATAAG-TCGGGGATCGACCTGAT-CCCTTATGCATGCTGCCGG
64 ACAAGCCGAAGAGGCATAATGCACAAGCT-AGGGATCGACCCGATCCCCCTATGCATACTGCCGG
* * *
32015938 TCCCACAGCCACAACCCTTGGT-CAGCTGGGG
128 TCCAACAGCCACAACCCTCGGTCCAGCTAGGG
* * *
32015969 CTTAGACATGGAATGAACTCCCTATACCTAAGCCAACCCACGAAACAGGCGTGCGGGTGCTGAAC
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGCGAGCGGGAGCTGAAC
* * * ** * *
32016034 AAGCCGAAGAGGCATAATGCGCAAGCTAGGGATCGGCCCGATCCCCCTCTGTGTACTGCTGGTTC
66 AAGCCGAAGAGGCATAATGCACAAGCTAGGGATCGACCCGATCCCCCTATGCATACTGCCGGTCC
* *
32016099 AACTGCCACAACCCTCGGTCCGGCTAGGG
131 AACAGCCACAACCCTCGGTCCAGCTAGGG
32016128 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA
32016173 TGGGCGTACC
Statistics
Matches: 171, Mismatches: 28, Indels: 8
0.83 0.14 0.04
Matches are distributed among these distances:
157 86 0.50
158 34 0.20
159 51 0.30
ACGTcount: A:0.27, C:0.29, G:0.26, T:0.18
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGCGAGCGGGAGCTGAAC
AAGCCGAAGAGGCATAATGCACAAGCTAGGGATCGACCCGATCCCCCTATGCATACTGCCGGTCC
AACAGCCACAACCCTCGGTCCAGCTAGGG
Found at i:32016333 original size:27 final size:26
Alignment explanation
Indices: 32016288--32016339 Score: 77
Period size: 27 Copynumber: 2.0 Consensus size: 26
32016278 GGTCTGATCC
32016288 TAGACTAGGAATGAACTCCATATGCT
1 TAGACTAGGAATGAACTCCATATGCT
* *
32016314 TAGACTAGGGGATGAACTCCGTATGC
1 TAGACTA-GGAATGAACTCCATATGC
32016340 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 7 0.30
27 16 0.70
ACGTcount: A:0.31, C:0.19, G:0.25, T:0.25
Consensus pattern (26 bp):
TAGACTAGGAATGAACTCCATATGCT
Found at i:32016704 original size:26 final size:26
Alignment explanation
Indices: 32016666--32016718 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32016656 CTAGTCCGAT
32016666 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
32016692 CTTAGAC-GTGGAATGAACTCCGTATG
1 CTTAGACTG-GGAATGAACTCCATATG
32016718 C
1 C
32016719 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:32017946 original size:158 final size:158
Alignment explanation
Indices: 32017574--32018193 Score: 567
Period size: 158 Copynumber: 3.9 Consensus size: 158
32017564 AACTCCGTAT
* * * *
32017574 GCTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCCATGAAACGAGTGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * ** * * * **
32017639 CCGGCTGGAGAGGCAGAATGCATAAGCGGGGGATCGACCTGGT-CCCC-CTGCGTGCTGTTGATC
66 CCGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCTCTGCGTGCTGCCGATC
* * *
32017702 CTGCTGCCACAACCCTCAGTCTGG-TCCGA
131 CTGCTGCCACAACTCTC-GTCTGGCT-GGG
* * * ** * * * * * *
32017731 TCATAGA-TTGGGAATGAACTCTGTATGCATAAGTCAACCCATGAAATGAGCGTGCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * *
32017795 GCCGACCGAAGAGGTATAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTCTACGTG-TCACCGA
65 GCCGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCTCTGCGTGCT-GCCGA
32017859 TCCTGCTGCCACAACTCTCGTCTGGCTGGG
129 TCCTGCTGCCACAACTCTCGTCTGGCTGGG
* * * *
32017889 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGCGCGGGCGCTGAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
** * * * * * * *
32017954 -TAAGTCGAAGAGGCATAATGCGCAAGTCGGGGATCGATCCGAT-CCCCTTTGCGTGCTGCTGGT
66 CCGA-CCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCTCTGCGTGCTGCCGAT
** * *
32018017 CCAACTGCCACAACCTTTGGT-TAGGCTGGG
130 CCTGCTGCCACAA-CTCTCGTCT-GGCTGGG
*
32018047 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * *
32018112 CAGGCC-AGAGAGGCAGAATGCGCAAGTCGAGGATCGGCCCGATCCCCC-CTGCGTGCTGCCGAT
66 CCGACCGA-AGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCTCTGCGTGCTGCCGAT
* * *
32018175 CCTGATGTCACAACACTCG
130 CCTGCTGCCACAACTCTCG
32018194 ATCCGGTTCG
Statistics
Matches: 375, Mismatches: 75, Indels: 26
0.79 0.16 0.05
Matches are distributed among these distances:
156 1 0.00
157 116 0.31
158 226 0.60
159 32 0.09
ACGTcount: A:0.23, C:0.29, G:0.29, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCTCTGCGTGCTGCCGATC
CTGCTGCCACAACTCTCGTCTGGCTGGG
Found at i:32018615 original size:26 final size:26
Alignment explanation
Indices: 32018586--32018638 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
32018576 CTGGTCTGAT
**
32018586 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACAAGGAATGAACTCTGTATG
32018612 CTTAGACAAGGAATGAACTCTGTATG
1 CTTAGACAAGGAATGAACTCTGTATG
32018638 C
1 C
32018639 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACAAGGAATGAACTCTGTATG
Found at i:32019115 original size:157 final size:156
Alignment explanation
Indices: 32018612--32019115 Score: 460
Period size: 158 Copynumber: 3.2 Consensus size: 156
32018602 ACTCTGTATG
* ** * *
32018612 CTTAGACAAGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGACCGTGCGTGCGGGCGCT
1 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACG-AA--A-CGAGCATGCGGGCGCT
* * * * * * **
32018677 CAGCCGGTCGAAGAGGCAGAATGCGTAAGCCAGGGATCGGCCCGATCCCCCCTATGTGCTGTCGA
62 CAGCC-GTCGGAGAGGTAGAATGCGTAAGCCGGGGATTGACCCGGT-CCCCCTGCGTGCTGTCGA
* * *
32018742 TCC-AGCTACCGCAACCCTCGGTCTGGTCCGAT
125 TCCTA-CTGCCACAACCCTCGGTCTGGTTCGAT
* * *
32018774 CTTGGACATGGAATGAACTCCATATGCCTAGGCCAACCCACGAAACTAGCATGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGC
* ** * * * * *
32018839 C-TGCAGAGAGGTAGAATGCACAAGCTGGGGA-TCAGCCCGGAGTCCCTCTGCGTGCTGCCGGT-
66 CGT-CGGAGAGGTAGAATGCGTAAGCCGGGGATTGA-CCC-G-GTCCCCCTGCGTGCTGTCGATC
* * * * * **
32018901 CTCACCGCCACAACCCTTGATCTGGCTGGGG
127 CT-ACTGCCACAACCCTCGGTCTGGTTCGAT
* * * *
32018932 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATGCGGGTGCTCAGC
1 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGC
*
32018997 CGATCGGAGAGGTAGAATGCGTAAGCCGGGGATTGACCCGGTCCCCCTGCGTGTTGTCGATCCTA
66 CG-TCGGAGAGGTAGAATGCGTAAGCCGGGGATTGACCCGGTCCCCCTGCGTGCTGTCGATCCTA
* * * *
32019062 CTGTCATAACCCTGGGTCCGGTTCGAT
130 CTGCCACAACCCTCGGTCTGGTTCGAT
32019089 CTTAGAC-TGGGAATGAACTCCATATGC
1 CTTAGACAT-GGAATGAACTCCATATGC
32019116 TTAGATTAGG
Statistics
Matches: 270, Mismatches: 61, Indels: 27
0.75 0.17 0.08
Matches are distributed among these distances:
156 2 0.01
157 84 0.31
158 112 0.41
159 30 0.11
160 3 0.01
161 2 0.01
162 37 0.14
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (156 bp):
CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGC
CGTCGGAGAGGTAGAATGCGTAAGCCGGGGATTGACCCGGTCCCCCTGCGTGCTGTCGATCCTAC
TGCCACAACCCTCGGTCTGGTTCGAT
Found at i:32019497 original size:47 final size:46
Alignment explanation
Indices: 32019427--32019520 Score: 116
Period size: 47 Copynumber: 2.0 Consensus size: 46
32019417 GGATCAGCCC
* ** * * *
32019427 GGTCCCCCCTGCGTGCTGTCGATCTTGCTGTCGCAACCCTTGGTCT
1 GGTCCCCCCTGCGTGCTGCCGATCCCGCTGCCACAACCCTCGGTCT
*
32019473 GGTCCACCTCTGCGTGCTGCCGATCCCGCTGCCACAACCCTCGGTCT
1 GGTCC-CCCCTGCGTGCTGCCGATCCCGCTGCCACAACCCTCGGTCT
32019520 G
1 G
32019521 ACTGGGGTTA
Statistics
Matches: 40, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
46 5 0.12
47 35 0.88
ACGTcount: A:0.09, C:0.40, G:0.26, T:0.26
Consensus pattern (46 bp):
GGTCCCCCCTGCGTGCTGCCGATCCCGCTGCCACAACCCTCGGTCT
Found at i:32019714 original size:26 final size:26
Alignment explanation
Indices: 32019685--32019737 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32019675 CCGGTCCGAT
32019685 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
*
32019711 CTTAGACTAGGGATGAACTCTGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
32019737 C
1 C
32019738 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:32020181 original size:187 final size:185
Alignment explanation
Indices: 32019837--32020260 Score: 509
Period size: 187 Copynumber: 2.3 Consensus size: 185
32019827 GTGTTGTCGA
* * * *
32019837 TCCTGCTATCG-CAACCCTCGG-CTCGGTTCGATCTTAGACTGGGGATGAGCTCCGTATGCCTAA
1 TCCTGCTACCGTCAACCCTCGGTC-CGGTCCGATCTTAGACTGGGGATGAACTCCATATGCCTAA
* * *
32019900 GTCAACCCACAAAACGAGCGTGCGGGCGCTCAGCAGGCCGGAGAGGCCGGTCGGAGAGGTAGAAT
65 GTCAACCCACAAAACGAGCGTGCGAGCGCTCAGCAGGCCGGAGAGGCCGCTCGGAGAGGCAGAAT
*
32019965 GCGAAAGTCAGGGATCGGCTCGATCCACCCCTACATGCTGTCAATCCTACTGCTAG
130 GCGAAAGTCAGGGATCGACTCGATCCACCCCTACATGCTGTCAATCCTACTGCTAG
*
32020021 TCCTGCTACTAC-TACAACCCTCGGTCCAGTCCGATCTTAGACTGGGGATGAACTCCATATGCCT
1 TCCTGCTAC--CGT-CAACCCTCGGTCCGGTCCGATCTTAGACTGGGGATGAACTCCATATGCCT
** * * * * *
32020085 AAGTCAACCCATGAAATGAGCGTGCGAGTGCTTAGTAGGTCGGAGAGGCCAGCT-GGAGAGGCAG
63 AAGTCAACCCACAAAACGAGCGTGCGAGCGCTCAGCAGGCCGGAGAGGCC-GCTCGGAGAGGCAG
* * * * **
32020149 AATGCGAAAGTC-GAGGATCGACTTGGTCCACCCCTGCATGCTGTCGATCCTGTTGCTAG
127 AATGCGAAAGTCAG-GGATCGACTCGATCCACCCCTACATGCTGTCAATCCTACTGCTAG
* * * * *
32020208 TCTTGCTACCGT-AACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCC
1 TCCTGCTACCGTCAACCCTCGGTCCGGTCCGATCTTAGACTGGGGATGAACTCC
32020261 GTACGCTTAG
Statistics
Matches: 204, Mismatches: 28, Indels: 16
0.82 0.11 0.06
Matches are distributed among these distances:
184 44 0.22
185 1 0.00
186 3 0.01
187 153 0.75
188 3 0.01
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.22
Consensus pattern (185 bp):
TCCTGCTACCGTCAACCCTCGGTCCGGTCCGATCTTAGACTGGGGATGAACTCCATATGCCTAAG
TCAACCCACAAAACGAGCGTGCGAGCGCTCAGCAGGCCGGAGAGGCCGCTCGGAGAGGCAGAATG
CGAAAGTCAGGGATCGACTCGATCCACCCCTACATGCTGTCAATCCTACTGCTAG
Found at i:32020612 original size:26 final size:26
Alignment explanation
Indices: 32020583--32020635 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
32020573 CCGATCCGAT
*
32020583 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
* *
32020609 CTTACACTGGGGATGAACTCCTTATG
1 CTTACACTGGGAATGAACTCCGTATG
32020635 C
1 C
32020636 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:32023599 original size:26 final size:26
Alignment explanation
Indices: 32023570--32023622 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
32023560 CCAATCTGAT
* *
32023570 CTTAGACTGTAAATGAACTCTGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
**
32023596 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
32023622 C
1 C
32023623 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:32025404 original size:26 final size:26
Alignment explanation
Indices: 32025368--32025446 Score: 104
Period size: 26 Copynumber: 3.0 Consensus size: 26
32025358 CTGGTCCAAT
*
32025368 CTTAGACTGGGAATAAACTTTGTATG
1 CTTAGACTGGGAATAAACTCTGTATG
* *
32025394 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATAAACTCTGTATG
* * *
32025420 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCTGTATG
32025446 C
1 C
32025447 CTAAGTCCAC
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.25, C:0.16, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCTGTATG
Found at i:32029111 original size:26 final size:26
Alignment explanation
Indices: 32029075--32029127 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
32029065 CTGGTCTGAT
*
32029075 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
32029101 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
32029127 C
1 C
32029128 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:32030462 original size:26 final size:26
Alignment explanation
Indices: 32030433--32030485 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
32030423 CCGATTTGAT
32030433 CTTAGACTGGGAATGAACTCCGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
* * *
32030459 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
32030485 C
1 C
32030486 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:32030658 original size:26 final size:26
Alignment explanation
Indices: 32030629--32030681 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
32030619 CCGATCCGAT
32030629 CTTAGACTAGGAATAAACTCCGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
* * *
32030655 CTTAGACTAGGGATGAACTTCGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
32030681 C
1 C
32030682 CTACGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATAAACTCCGTATG
Found at i:32031906 original size:26 final size:26
Alignment explanation
Indices: 32031877--32031929 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32031867 CCAATCCGAT
32031877 CTTAGAC-TGGGAATGAACTCCATATG
1 CTTAGACAT-GGAATGAACTCCATATG
*
32031903 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCATATG
32031929 C
1 C
32031930 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:32033446 original size:26 final size:26
Alignment explanation
Indices: 32033417--32033467 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
32033407 CCGGTTCGAT
**
32033417 CTTAGACTGGGAATGAACTCCGTATA
1 CTTAGACAAGGAATGAACTCCGTATA
32033443 CTTAGACAAGGAATGAACTCCGTAT
1 CTTAGACAAGGAATGAACTCCGTAT
32033468 GCCTAAGCCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.33, C:0.20, G:0.22, T:0.25
Consensus pattern (26 bp):
CTTAGACAAGGAATGAACTCCGTATA
Found at i:32033739 original size:158 final size:157
Alignment explanation
Indices: 32033443--32033840 Score: 419
Period size: 158 Copynumber: 2.5 Consensus size: 157
32033433 ACTCCGTATA
* * *
32033443 CTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGTGGGCACTCAGT
1 CTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGTGGGCACTCAGT
* * * * *
32033508 CGGCTGGAGAGGTAGAATGCAAAAGTCGGGGACCGACCCGATCCCCCCTGTGTGCTATCGATCTT
65 CGGCCGGAGAGGCAGAATGCAAAAGTCGAGGACCGACCCGATCCCCCCTGCGTGCTATCGATCTG
* * * *
32033573 GCTGCCACAACCCTCGGTCTAATCT-GAT
130 GCTACCACAACCCTCAGTCT-AGCTGGAG
* ** *
32033601 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCAT-TGGGTGCTGAG-
1 CTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGTGGGCACTCAGT
* ** * * * * *
32033664 CAGGCCGGAGAGGCATAATGCGCAAGTCGAGGATC-ATCTCGGTCCCCCTCTGCGTGCTGTCGGT
65 C-GGCCGGAGAGGCAGAATGCAAAAGTCGAGGACCGA-CCCGATCCCCC-CTGCGTGCTATCGAT
*
32033728 CTGGCTACCACAACCCTCAGTCTGGCTGGAG
127 CTGGCTACCACAACCCTCAGTCTAGCTGGAG
* * *
32033759 CTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCCATGAAATGAGCATGTCGG-AGCTCAG
1 CTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGTGGGCA-CTCAG
* *
32033823 TCGGTCGGAGAGGTAGAA
64 TCGGCCGGAGAGGCAGAA
32033841 CGCGTAAACT
Statistics
Matches: 197, Mismatches: 34, Indels: 17
0.79 0.14 0.07
Matches are distributed among these distances:
156 2 0.01
157 45 0.23
158 128 0.65
159 21 0.11
160 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.27, T:0.20
Consensus pattern (157 bp):
CTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGTGGGCACTCAGTC
GGCCGGAGAGGCAGAATGCAAAAGTCGAGGACCGACCCGATCCCCCCTGCGTGCTATCGATCTGG
CTACCACAACCCTCAGTCTAGCTGGAG
Found at i:32035011 original size:26 final size:26
Alignment explanation
Indices: 32034971--32035022 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
32034961 TGGTTTGATA
32034971 TTAGACTAGGAATGAACTCCGTATGC
1 TTAGACTAGGAATGAACTCCGTATGC
* *
32034997 TTAGACTGGGGATGAACTCCGTATGC
1 TTAGACTAGGAATGAACTCCGTATGC
32035023 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTCCGTATGC
Found at i:32035312 original size:26 final size:26
Alignment explanation
Indices: 32035276--32035328 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
32035266 TCGTTCTGAT
* *
32035276 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCATATG
*
32035302 CTTAGACTGGGGATAAACTCCATATG
1 CTTAGACTGGGAATAAACTCCATATG
32035328 C
1 C
32035329 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCATATG
Found at i:32036571 original size:26 final size:26
Alignment explanation
Indices: 32036531--32036582 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
32036521 TGGTTCGATA
32036531 TTAGACTAGGAATGAACTCCGTATGC
1 TTAGACTAGGAATGAACTCCGTATGC
* *
32036557 TTAGACTGGGGATGAACTCCGTATGC
1 TTAGACTAGGAATGAACTCCGTATGC
32036583 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTCCGTATGC
Found at i:32037172 original size:159 final size:158
Alignment explanation
Indices: 32036871--32037377 Score: 379
Period size: 159 Copynumber: 3.2 Consensus size: 158
32036861 ACTCCGTATG
* * *
32036871 CTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTTCGGG-AGCTCA
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCA-CTCA
* * ** * * * * * *
32036934 -ACTGACCGGAGAGGCAGAACGCACAAG-TCGAGGACTGGCCCGATCCTCCCC-T-GCGTGCTGT
64 GCCAG-CCGGAGAGGCAGAATACGCAAGCTAG-GGATTGACCCGGT--TCCCCATCG-GTGCTAT
* * * * *
32036995 CGATCCTGCTATCGCAACCCTCGGTTCGATTCGAT
124 CCATCCCGCTACCACAACCCTCGATTCGATTCGAT
* * * *
32037030 ATTAGACTGGGAATGAACTCCGTATGCCTAAGTCATCCCATGAAACGAGCGTGCGGGCACTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGC
* * * * *
32037095 CAGCCGGAGAGGCATAATACGCAAG-TCGGGGATTGGCCCGG-TCCCCGTCTGTG-TATTGCCAG
66 CAGCCGGAGAGGCAGAATACGCAAGCT-AGGGATTGACCCGGTTCCCCATCGGTGCTA-T-CCA-
** ** * **
32037157 TCCCGCTACCACAACCCTCCTTTCGGCTGGGG
127 TCCCGCTACCACAACCCTCGATTCGATTCGAT
* * * *
32037189 CTTAGACAT-GGAATAAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCACTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAG
** * * * * *
32037253 CTGGTCGGAGAGGCAGAATACGTAAGCTAGGGATTGACTCGGTTCCCCATGGGTGCTATCGATCC
65 CCAGCCGGAGAGGCAGAATACGCAAGCTAGGGATTGACCCGGTTCCCCATCGGTGCTATCCATCC
* ** *
32037318 TGCTGTCGCAACCCTCGATTCGATTCGAT
130 CGCTACCACAACCCTCGATTCGATTCGAT
*
32037347 CTTAGACTGGGAATGAACTCTGTATG-CTAAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAG
32037378 ACTGGGGATG
Statistics
Matches: 271, Mismatches: 63, Indels: 30
0.74 0.17 0.08
Matches are distributed among these distances:
156 6 0.02
157 11 0.04
158 45 0.17
159 191 0.70
160 16 0.06
161 2 0.01
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.21
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGC
CAGCCGGAGAGGCAGAATACGCAAGCTAGGGATTGACCCGGTTCCCCATCGGTGCTATCCATCCC
GCTACCACAACCCTCGATTCGATTCGAT
Found at i:32037388 original size:26 final size:27
Alignment explanation
Indices: 32037350--32037404 Score: 85
Period size: 26 Copynumber: 2.1 Consensus size: 27
32037340 ATTCGATCTT
*
32037350 AGACTGGGAATGAACTCTGTATG-CTA
1 AGACTGGGAATGAACTCCGTATGCCTA
*
32037376 AGACTGGGGATGAACTCCGTATGCCTA
1 AGACTGGGAATGAACTCCGTATGCCTA
32037403 AG
1 AG
32037405 TTAACCCACA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
26 21 0.81
27 5 0.19
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (27 bp):
AGACTGGGAATGAACTCCGTATGCCTA
Found at i:32037571 original size:26 final size:26
Alignment explanation
Indices: 32037552--32037620 Score: 129
Period size: 26 Copynumber: 2.7 Consensus size: 26
32037542 CTTAGATTGA
32037552 GAATGAACTCCGTATGCTTAGACATG
1 GAATGAACTCCGTATGCTTAGACATG
32037578 GAATGAACTCCGTATGCTTAGACATG
1 GAATGAACTCCGTATGCTTAGACATG
*
32037604 GAATGAACTTCGTATGC
1 GAATGAACTCCGTATGC
32037621 CTAAGCCAAC
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 42 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
GAATGAACTCCGTATGCTTAGACATG
Found at i:32038227 original size:355 final size:356
Alignment explanation
Indices: 32037568--32038227 Score: 807
Period size: 355 Copynumber: 1.9 Consensus size: 356
32037558 ACTCCGTATG
* * * *
32037568 CTTAGACATGGAATGAACTCCGTATGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCC
1 CTTAGACATGGAATGAACTCCATACGCTTAGACATGGAACGAACTCCGTATGCCTAAGCCAACCC
* * * * * *
32037633 ACGAAACGAGGGTCCAGGCATCCAGCCAGTCGGAGAGGCAGAATGCTCAAGCCGGGGACCGGCCC
66 ACGAAACGAGCGTCCAGGCATCCAGCCAGCCGAAAAGGCAAAATGCTCAAGCCGGGGACCGACCC
* * * *
32037698 GATCCCCATCTACGTACTGCCGGTCCAACTGCCACAACCCTTGGTCCGGCTAGGGCTTAGACATG
131 GATCCCCACCTACGTACTGCCGATCCAACTGCCACAACCCTCGGTCCGGCTAGAGCTTAGACATG
* ** *
32037763 GAATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGTGGGTGCTCAGCCGGTCGGAGA
196 GAATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGCACTCAGCCGATCGGAGA
* * * **
32037828 GGCAGAATGCGTAAGCCGGGGATTGGCCCGGTTACCCCCTACGTGTTATCGATCCTATTACTGGT
261 GCCAGAATGCGCAAGCCGGGGATCGGCCCGAATACCCCCTACGTGTTATCGATCCTATTACTGGT
32037893 CCTGGTGTCGTAACCTTCGATCCAATCCGAT
326 CCTGGTGTCGTAACCTTCGATCCAATCCGAT
32037924 CTTAGAC-TGAGAATGAACTCCATACGCTTAGACATGGAACGAACTCCGTATGCCTAAGCCAACC
1 CTTAGACATG-GAATGAACTCCATACGCTTAGACATGGAACGAACTCCGTATGCCTAAGCCAACC
* * * * **
32037988 CACGAAATGAGCGTGCGAGCGC-T-CAG-CTGACCGAAAAGGTAAAATGCGT-AAGTTGGGGACC
65 CACGAAACGAGCGT-CCAG-GCATCCAGCCAG-CCGAAAAGGCAAAATGC-TCAAGCCGGGGACC
* * * * * *
32038049 GACCTGATCCCC-CCTACGTGCTGTCGATCCTACTGCCATAACCCTCGGTCCGGTCT-GATCTTA
126 GACCCGATCCCCACCTACGTACTGCCGATCCAACTGCCACAACCCTCGGTCCGG-CTAGAGCTTA
** *
32038112 GAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCACTGAGCCGA
190 GACAT-GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGCACTCAGCCGA
* * * *
32038176 TCGGAGAGCCATAATGCGCAAGCTGGGGATCGG-CCTAATCCCCCTCTACGTG
254 TCGGAGAGCCAGAATGCGCAAGCCGGGGATCGGCCCGAATACCCC-CTACGTG
32038228 CTACGGGTCC
Statistics
Matches: 254, Mismatches: 42, Indels: 17
0.81 0.13 0.05
Matches are distributed among these distances:
354 8 0.03
355 133 0.52
356 106 0.42
357 5 0.02
358 2 0.01
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (356 bp):
CTTAGACATGGAATGAACTCCATACGCTTAGACATGGAACGAACTCCGTATGCCTAAGCCAACCC
ACGAAACGAGCGTCCAGGCATCCAGCCAGCCGAAAAGGCAAAATGCTCAAGCCGGGGACCGACCC
GATCCCCACCTACGTACTGCCGATCCAACTGCCACAACCCTCGGTCCGGCTAGAGCTTAGACATG
GAATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGCACTCAGCCGATCGGAGA
GCCAGAATGCGCAAGCCGGGGATCGGCCCGAATACCCCCTACGTGTTATCGATCCTATTACTGGT
CCTGGTGTCGTAACCTTCGATCCAATCCGAT
Found at i:32038297 original size:159 final size:158
Alignment explanation
Indices: 32037949--32038395 Score: 445
Period size: 159 Copynumber: 2.8 Consensus size: 158
32037939 AACTCCATAC
* * *
32037949 GCTTAGACATGGAACGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGAGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
* * * * * * * * *
32038014 CTGACCGAAAAGGTAAAATGCGTAAGTTGGGGACCGACCTGATCCCCCCTACGTGCTGTCGATCC
66 CCGACCGGAGAGGCAAAATGCGCAAGCTGGGGATCGACCTAATCCCCCCTACGTGCTGACGATCC
* * *
32038079 TACTGCCATAACCCTCGGTCCGGTCTGA
131 CACTACCACAACCCTCGGTCCGGTCTGA
* * * *
32038107 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCA
* * * * *
32038171 GCCGATCGGAGAGCCATAATGCGCAAGCTGGGGATCGGCCTAATCCCCCTCTACGTGCT-ACGGG
65 GCCGACCGGAGAGGCAAAATGCGCAAGCTGGGGATCGACCTAATCCCCC-CTACGTGCTGAC-GA
* * *
32038235 TCCCGCTACCACAACCCTCGGTCTGG-CTGGG
128 TCCCACTACCACAACCCTCGGTCCGGTCT-GA
* * * * * * * *
32038266 GCTTAGACATGGAATGAACTCCCTTTGCCTAACCCAACCCATGAAACGGGTGTACAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
* * * * *
32038331 CCGGCCGGAGAGGCAGAATGCACAAGCTGGGGATC-AACTCGATCCCCCCTACGTGCT-ACTGAT
66 CCGACCGGAGAGGCAAAATGCGCAAGCTGGGGATCGACCT-AATCCCCCCTACGTGCTGAC-GAT
32038394 CC
129 CC
32038396 TGCTATCGTA
Statistics
Matches: 234, Mismatches: 49, Indels: 12
0.79 0.17 0.04
Matches are distributed among these distances:
157 1 0.00
158 112 0.48
159 120 0.51
160 1 0.00
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
CCGACCGGAGAGGCAAAATGCGCAAGCTGGGGATCGACCTAATCCCCCCTACGTGCTGACGATCC
CACTACCACAACCCTCGGTCCGGTCTGA
Found at i:32039798 original size:26 final size:27
Alignment explanation
Indices: 32039769--32039826 Score: 84
Period size: 26 Copynumber: 2.2 Consensus size: 27
32039759 CCGATCTGAT
32039769 CTTAGAC-TAGGAATGAACTCCGTATG-
1 CTTAGACAT-GGAATGAACTCCGTATGC
*
32039795 CTTAGGCATGGAATGAACTCCGTATGC
1 CTTAGACATGGAATGAACTCCGTATGC
32039822 CTTAG
1 CTTAG
32039827 CCAACCCAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
26 23 0.79
27 6 0.21
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.28
Consensus pattern (27 bp):
CTTAGACATGGAATGAACTCCGTATGC
Found at i:32040311 original size:26 final size:26
Alignment explanation
Indices: 32040272--32040322 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
32040262 GGTCTGATCC
32040272 TAGACTAGGAATGAACTCCGTATGCT
1 TAGACTAGGAATGAACTCCGTATGCT
*
32040298 TAGACTA-GAGATGAACTTCGTATGC
1 TAGACTAGGA-ATGAACTCCGTATGC
32040323 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 2 0.09
26 21 0.91
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (26 bp):
TAGACTAGGAATGAACTCCGTATGCT
Found at i:32040893 original size:26 final size:26
Alignment explanation
Indices: 32040864--32040913 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
32040854 GTCTGATGTG
*
32040864 AGACTGGGAATGAACTCTGTATGCTT
1 AGACTGGGAATGAAATCTGTATGCTT
*
32040890 AGACTGGGGATGAAATCTGTATGC
1 AGACTGGGAATGAAATCTGTATGC
32040914 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.14, G:0.30, T:0.28
Consensus pattern (26 bp):
AGACTGGGAATGAAATCTGTATGCTT
Found at i:32041669 original size:26 final size:26
Alignment explanation
Indices: 32041596--32041662 Score: 127
Period size: 26 Copynumber: 2.6 Consensus size: 26
32041586 GGCTCAAACT
32041596 TTAGACATGGAATGAACTCTATATGC
1 TTAGACATGGAATGAACTCTATATGC
32041622 TTAGACATGGAATGAACTCTATATGC
1 TTAGACATGGAATGAACTCTATATGC
32041648 TTAGACAT-GAATGAA
1 TTAGACATGGAATGAA
32041663 TTCCTATGCC
Statistics
Matches: 41, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
25 7 0.17
26 34 0.83
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.30
Consensus pattern (26 bp):
TTAGACATGGAATGAACTCTATATGC
Found at i:32043818 original size:158 final size:157
Alignment explanation
Indices: 32043520--32043826 Score: 350
Period size: 158 Copynumber: 1.9 Consensus size: 157
32043510 AACTCCTTAC
* * *
32043520 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTACCTATGCCTAAGCCAACCCACGAAAAGAGCGTGCGGGCGCTCAG
* * * * * * ** *
32043585 CCGACCGAGTGGCAGCATGCGCAAGCCGGGGATTGACCTGGTCTCCATTTGCTTGCTGTCGGTCC
66 CCGACCGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCATGTGC-TGCTACCGATCC
32043650 CGCTGCCGCAACCATCGGTTTGGCTGGG
130 CGCTGCCGCAACCATCGGTTTGGCTGGG
*
32043678 GCTTAGACATGGAATGAACTACCTATGCCTAAGCCAACCCACGAAAAGGGCGTGCGGGCGCTCA-
1 GCTTAGACATGGAATGAACTACCTATGCCTAAGCCAACCCACGAAAAGAGCGTGCGGGCGCTCAG
* * * * *
32043742 CCTGGCCGAAGAGGCAGAATGTGCAAGTCGGGGATCGGCCCGAG-CACCCCTGTG-TGCTACCGA
66 CC-GACCG-AGAGGCAGAATGCGCAAGCCGGGGATCGACCCG-GTC-CCCATGTGCTGCTACCGA
** * *
32043805 TCTTGCTGTCGCAACCCTCGGT
127 TCCCGCTGCCGCAACCATCGGT
32043827 CCAGTTAGAT
Statistics
Matches: 123, Mismatches: 22, Indels: 8
0.80 0.14 0.05
Matches are distributed among these distances:
157 2 0.02
158 88 0.72
159 27 0.22
160 6 0.05
ACGTcount: A:0.21, C:0.30, G:0.30, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTACCTATGCCTAAGCCAACCCACGAAAAGAGCGTGCGGGCGCTCAG
CCGACCGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCATGTGCTGCTACCGATCCC
GCTGCCGCAACCATCGGTTTGGCTGGG
Found at i:32043873 original size:26 final size:26
Alignment explanation
Indices: 32043837--32043889 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
32043827 CCAGTTAGAT
32043837 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
32043863 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
32043889 C
1 C
32043890 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:32044419 original size:26 final size:26
Alignment explanation
Indices: 32044390--32044441 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
32044380 CCAGTTCGAT
32044390 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
32044416 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
32044442 GCTAAGTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:32044989 original size:26 final size:26
Alignment explanation
Indices: 32044953--32045005 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
32044943 CTGGTCTGAT
32044953 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
32044979 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
32045005 C
1 C
32045006 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:32045998 original size:26 final size:26
Alignment explanation
Indices: 32045957--32046009 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
32045947 CCAGTCTGAT
32045957 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
32045983 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
32046009 C
1 C
32046010 CCAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:32046728 original size:26 final size:26
Alignment explanation
Indices: 32046690--32046742 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
32046680 GGCTCAAACT
32046690 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
32046716 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
32046742 C
1 C
32046743 CTAAGCCCAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:32047815 original size:26 final size:26
Alignment explanation
Indices: 32047777--32047829 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32047767 GGCTCAAACT
*
32047777 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
32047803 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
32047829 C
1 C
32047830 CTAAGGCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:32048172 original size:26 final size:26
Alignment explanation
Indices: 32048120--32048172 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
32048110 CCGGTCCAAT
* * *
32048120 CTTATACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
*
32048146 CTTAGACTGGGGATGAACTCCGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
32048172 C
1 C
32048173 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:32049298 original size:26 final size:26
Alignment explanation
Indices: 32049256--32049306 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
32049246 TCTGGTCGAT
*
32049256 CTTAGACTGGGACTGAACTCAGTATG
1 CTTAGACTGGGAATGAACTCAGTATG
*
32049282 CTTAGACAT-GGAATGAACTCTGTAT
1 CTTAGAC-TGGGAATGAACTCAGTAT
32049307 ACCTAAGCCA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCAGTATG
Found at i:32049791 original size:26 final size:26
Alignment explanation
Indices: 32049762--32049813 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
32049752 CCGGTCCAAT
32049762 TTAGAATGGGAATGAACTCCATATGC
1 TTAGAATGGGAATGAACTCCATATGC
* *
32049788 TTAGACTGGGGATGAACTCCATATGC
1 TTAGAATGGGAATGAACTCCATATGC
32049814 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.27
Consensus pattern (26 bp):
TTAGAATGGGAATGAACTCCATATGC
Found at i:32053886 original size:26 final size:26
Alignment explanation
Indices: 32053857--32053909 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
32053847 CCGATCTGAT
32053857 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
32053883 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
32053909 C
1 C
32053910 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:32054608 original size:26 final size:26
Alignment explanation
Indices: 32054579--32054631 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32054569 GGCTCAAAAT
*
32054579 CTTAGAC-TGTGAATGAACTTCGTATG
1 CTTAGACATG-GAATGAACTCCGTATG
32054605 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
32054631 C
1 C
32054632 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:32055109 original size:26 final size:26
Alignment explanation
Indices: 32055079--32055131 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
32055069 TCCGTCTGAT
32055079 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
32055105 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
32055131 C
1 C
32055132 CTCAGTCAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:32055460 original size:25 final size:26
Alignment explanation
Indices: 32055432--32055483 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
32055422 CCGATCCGAT
*
32055432 CTTAGAC-TGGAATGAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
*
32055457 CTTAGACAAGGAATGAACTCTGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
32055483 C
1 C
32055484 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (26 bp):
CTTAGACAAGGAATGAACTCCGTATG
Found at i:32055971 original size:26 final size:26
Alignment explanation
Indices: 32055942--32055993 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
32055932 TCGATCCGAT
32055942 CTTAGAC-TGAGAATGAACTCCGTATG
1 CTTAGACATG-GAATGAACTCCGTATG
32055968 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
32055994 GCTAAGCCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:32056236 original size:852 final size:846
Alignment explanation
Indices: 32054577--32056883 Score: 1852
Period size: 852 Copynumber: 2.7 Consensus size: 846
32054567 ATGGCTCAAA
* *
32054577 ATCTTAGACTGTGAATGAACTTCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
1 ATCTTAGACTGTGAATGAACTCCGTATGCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * *
32054642 CCACGAAACGAGCGTGCAGGCGCTCAGCCGGTCGGAGAGGCAGAATGCGTAAGCCGAGGATCGAT
66 CCACGAAACGAGCGTACAGGCGCTCAACCGGTCCGAGAGGCAGAATGCGCAAGCCGAGGATCGAC
* * * *
32054707 CCAGTCCCCCCTGTATGCTGTCGATCCTACTGCTGCAACCATTGGTCCGGTCCGATCTTAGACTG
131 CCAGTCCCCCCTGCATGCTGTCGATCCTACTGCTGCAACCATCGATCCGATCCGATCTTAGACTG
* ** * * *
32054772 GGAATGAACTTCGTATGCATAAGTCAACCCATGAAATGAGCGTGCGGGCGCTGAGCCGGCTGAAG
196 GGAATGAACTCCGTATGCATAAGTCAACCCACAAAACGAGCGGGCGGGCGCTGAGCCGGCTGAAA
* * ** * *
32054837 AGGCATAATGCGCTGGCAAGGGATTGGCCCGATCCCCCTCTGTGTGCTACCGGTCCCACTACCAC
261 AGGCAAAATGCGCAGGCAAGGGATCAGCCCGATCACCCTCTGTGTGCTACCAGTCCCACTACCAC
* * * *
32054902 AACCCTCGGTCTAACTACGGCTTACACATGGAATTAACTCCCTATGAGTAAGCCAACCCACAAAA
326 AACCCTCGATCCAACTACGGCTTACACATGGAATGAACTCCCTATGACTAAGCCAACCCACAAAA
* * * *
32054967 TGGGCGTGCGGGCGCTCAACCGGCTGGAGAGGCAGAATGCACAAGTCGGGGATCAGCCCGGTCCC
391 TAGGCGTGCGGGCACTCAACCGGCTAGAGAAGCAGAATGCACAAGTCGGGGATCAGCCCGGTCCC
* * *
32055032 CCCTGCGTGCTGTCGATCCTACTAAAAAAACCCTCTGTCCGTCTGATCTTAGACTGGGAATGAAC
456 CCCTGCGTCCTGTCGATCCTACTAAAAAAACCCTCTGTCCGTCCGATCTTAGACTGAGAATGAAC
* * * *
32055097 TCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTCAGTCAAACCATGAAACGAGCATGCGGG
521 TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAACCACGAAACGAGCATGCGGG
* * * * * * *
32055162 CGCTCAGCCGACCCGAGAGGCATAATACGTAAGCGGGGATCAGCCTGGTCCCCCTCTGCGTGCTG
586 CGCTCAGCCGACCCGAGAGGCAGAATACGCAACCGAGGATCAGCCCGATCCCCCTCTGCGTGCTA
* * * * *
32055227 TCAATCCCACTGCCGGTCCTGTTGTCGTAACCCTCGGTTCGGCTGGGGCTTAGACATGGAATGAA
651 TCAAT-CCACTGCC-GTCC---T-ACG-AACCCTCGATTCGACTCGAGCTTAGACATGGAATGAA
** * ** * *
32055292 CTCTGTATGCCTAAGCCAACCCACGAAATGAGCTTACGGGCACTCAGCCAGCCGGAGAGGCAGAA
709 CTCCATATGACTAAGCCAACCCACGAAACAAGCGTAAGGGCACTCAGCCAGCCGGAGAGGCAGAA
**
32055357 TGCGCAAGCCAGGGATCGATTCGGTCCCCCTGCGTGCTACCGATCCTGCTGTCACAACACTCGAT
774 TGCGCAAGCCAGGGATCGACCCGGTCCCCCTGCGTGCTACCGATCCTGCTGTCACAACACTCGAT
32055422 CCGATCCG
839 CCGATCCG
*
32055430 ATCTTAGACTG-GAATGAACTCCGTATGCTTAGACAAGGAATGAACTCTGTATGCCTAAGCCAAC
1 ATCTTAGACTGTGAATGAACTCCGTATGCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAAC
* *
32055494 CCACGAAATGAGCGTACGGGCGCTCAACCGG-CCGATGAGGCAGAATGCGCAAGCCGAGGATCGA
66 CCACGAAACGAGCGTACAGGCGCTCAACCGGTCCGA-GAGGCAGAATGCGCAAGCCGAGGATCGA
* ** * *
32055558 CCCAGTCCCCCCTGCGTGCTGTCGATCCTGTTG-TCGCAACCCTCGATCCGATCTGATCTTAGAC
130 CCCAGTCCCCCCTGCATGCTGTCGATCCTACTGCT-GCAACCATCGATCCGATCCGATCTTAGAC
*
32055622 TGGGAATGAACTCCGTATG-ACTAAGTCAACCCACAAAACGAGCGGGCGGGCG-TGAGCC-GATC
194 TGGGAATGAACTCCGTATGCA-TAAGTCAACCCACAAAACGAGCGGGCGGGCGCTGAGCCGGCT-
* * * ** * *
32055684 GAAAAGGTAAAATGCGCAAGTC-AGGGATCAGCCCGGTCACCCTCTGTGTGCTGTCAGTCTCGCT
257 GAAAAGGCAAAATGCGC-AGGCAAGGGATCAGCCCGATCACCCTCTGTGTGCTACCAGTCCCACT
* * ** * *
32055748 GCCACAACCCTCGATCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
321 ACCACAACCCTCGATCCAACTACGGCTTACACATGGAATGAACTCCCTATGACTAAGCCAACCCA
** * * ** *
32055813 TGAAATAGGCGTGCGGGCATTCAGCCGGCTAGAGAAGCAGAATGTGCAAGTCGGGGATCGGCCCG
386 CAAAATAGGCGTGCGGGCACTCAACCGGCTAGAGAAGCAGAATGCACAAGTCGGGGATCAGCCCG
* * **** *
32055878 GTCCCCCTGTGTGCTGCCGATCCTGCTGCTGGTCCTGCTACCGCAACCCTC-GATTCGATCCGAT
451 GTCCCCC------CTG-CG-TCCTG-T-C-GATCCTACTAAAAAAACCCTCTG-TCCG-TCCGAT
* *
32055942 CTTAGACTGAGAATGAACTCCGTATGCTTAGACAT-GGAATGAACTCCGTATGGCTAAGCCAACC
503 CTTAGACTGAGAATGAACTCCGTATGCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAAAC
** * * * * * **
32056006 CACGAAACGAGTGTGTGGGCGCTCAGTCGA-TCGAAGAGGTAGAATGCGCAACCCGAGGATTGGC
567 CACGAAACGAGCATGCGGGCGCTCAGCCGACCCG-AGAGGCAGAATACGCAA-CCGAGGATCAGC
* * * *
32056070 CCGATCCCTCC-CTGTGTGCTATCGAT-C-CTG-C-TACC-AC-AACCCTCGA-TCTGATTCGAT
630 CCGATCCC-CCTCTGCGTGCTATCAATCCACTGCCGT-CCTACGAACCCTCGATTC-GACTCGAG
* * *
32056127 CTTAGAC-TGGGAGTGAACTCCATATGACTAAGTCAACCCACGAAACAAGCGTAAGGGCACTGAG
692 CTTAGACAT-GGAATGAACTCCATATGACTAAGCCAACCCACGAAACAAGCGTAAGGGCACTCAG
* * * ** ** *
32056191 CC-GATCGGAGAGGCATAATGCGCAAGTCAGGGATCGACCCGGTCCCCTCTAAGTGCTGTCGGTC
756 CCAG-CCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGGTCCCC-CTGCGTGCTACCGATC
** * *
32056255 CCACTGCCACAAC-C-C--T-CGGTCCG
819 CTGCTGTCACAACACTCGATCCGATCCG
* * *
32056278 ------G--T-TG---G------G---GCTTAGACATGGAATGAACTCCCTATGCCTAAGCTAAC
1 ATCTTAGACTGTGAATGAACTCCGTATGCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * ** ** * * *
32056322 CCATGAAACG-GATGTGCGGGCATTCAGTC-GACCTGAGATG-AGAATGCGCAAGCCGGGGATC-
66 CCACGAAACGAG-CGTACAGGCGCTCAACCGGTCC-GAGAGGCAGAATGCGCAAGCCGAGGATCG
* * ** * * * *
32056383 AGCCCGGTCCCCCCTGCGTGCTACCGATCCTACTACAGCAACCCTCTG-TCCGATCTGATCTTAG
129 A-CCCAGTCCCCCCTGCATGCTGTCGATCCTACTGCTGCAACCATC-GATCCGATCCGATCTTAG
* * * * * * * *
32056447 ACTGGGAATGAACTTCGTATGC-TGAAGTCAACCTACGAAACGAGTGTGCGAGCACTGAACCGGC
192 ACTGGGAATGAACTCCGTATGCAT-AAGTCAACCCACAAAACGAGCGGGCGGGCGCTGAGCCGGC
* * * * * * * * ** ** *
32056511 CGAAGA-GCATAATACGCAAGC-CGAGGATCGGCTCGATC-CCCTTCTGCATGCTGTCGGTCCCA
256 TGAAAAGGCAAAATGCGCAGGCAAG-GGATCAGCCCGATCACCC-TCTGTGTGCTACCAGTCCCA
* * * * * ** * *
32056573 CTGCCATAGCCCTC-AGTCTAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
319 CTACCACAACCCTCGA-TCCAACTACGGCTTACACATGGAATGAACTCCCTATGACTAAGCCAAC
** * * * * * ** **
32056637 CCACAAAACGGGCGTGCGGGCACTTAGCCAG-TCGAAGAGGCAGAATGTGCAAG-CTGGGGATTG
383 CCACAAAATAGGCGTGCGGGCACTCAACCGGCTAG-AGAAGCAGAATGCACAAGTC-GGGGATCA
* * * * ***** * ** *
32056700 GCCCGGTCCCCCATGCATGCT-ACTGATCCTACTGCCGTAACCCTCAGTCCGGTTTGATCTTATA
446 GCCCGGTCCCCCCTGCGTCCTGTC-GATCCTACTAAAAAAACCCTCTGTCC-GTCCGATCTTAGA
* * * * * * *
32056764 CTGGGAATTAACTCCGTATGCTGAGATTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAA
509 CTGAGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAACCACGAAA
* * * * * *
32056829 CGAGCATGCGGGCGTTCAGCCAACCAGAGAGGCAGGATGCGTAAGCCGAGGATCA
574 CGAGCATGCGGGCGCTCAGCCGACCCGAGAGGCAGAATACGCAA-CCGAGGATCA
32056884 AACAGGTGGT
Statistics
Matches: 1190, Mismatches: 217, Indels: 131
0.77 0.14 0.09
Matches are distributed among these distances:
815 1 0.00
816 125 0.11
817 3 0.00
819 3 0.00
820 1 0.00
821 2 0.00
826 12 0.01
827 271 0.23
828 68 0.06
829 3 0.00
831 1 0.00
837 1 0.00
840 2 0.00
842 1 0.00
848 6 0.01
849 1 0.00
850 2 0.00
851 179 0.15
852 307 0.26
853 32 0.03
854 1 0.00
857 3 0.00
858 3 0.00
859 6 0.01
860 2 0.00
861 5 0.00
862 21 0.02
863 99 0.08
864 27 0.02
865 2 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (846 bp):
ATCTTAGACTGTGAATGAACTCCGTATGCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAAC
CCACGAAACGAGCGTACAGGCGCTCAACCGGTCCGAGAGGCAGAATGCGCAAGCCGAGGATCGAC
CCAGTCCCCCCTGCATGCTGTCGATCCTACTGCTGCAACCATCGATCCGATCCGATCTTAGACTG
GGAATGAACTCCGTATGCATAAGTCAACCCACAAAACGAGCGGGCGGGCGCTGAGCCGGCTGAAA
AGGCAAAATGCGCAGGCAAGGGATCAGCCCGATCACCCTCTGTGTGCTACCAGTCCCACTACCAC
AACCCTCGATCCAACTACGGCTTACACATGGAATGAACTCCCTATGACTAAGCCAACCCACAAAA
TAGGCGTGCGGGCACTCAACCGGCTAGAGAAGCAGAATGCACAAGTCGGGGATCAGCCCGGTCCC
CCCTGCGTCCTGTCGATCCTACTAAAAAAACCCTCTGTCCGTCCGATCTTAGACTGAGAATGAAC
TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAACCACGAAACGAGCATGCGGG
CGCTCAGCCGACCCGAGAGGCAGAATACGCAACCGAGGATCAGCCCGATCCCCCTCTGCGTGCTA
TCAATCCACTGCCGTCCTACGAACCCTCGATTCGACTCGAGCTTAGACATGGAATGAACTCCATA
TGACTAAGCCAACCCACGAAACAAGCGTAAGGGCACTCAGCCAGCCGGAGAGGCAGAATGCGCAA
GCCAGGGATCGACCCGGTCCCCCTGCGTGCTACCGATCCTGCTGTCACAACACTCGATCCGATCC
G
Found at i:32056269 original size:512 final size:498
Alignment explanation
Indices: 32055268--32056469 Score: 1427
Period size: 512 Copynumber: 2.4 Consensus size: 498
32055258 CCTCGGTTCG
** * * *
32055268 GCTGGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCTTACGGGC
1 GCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATG-GCGTGCGGGC
* * * * * ***
32055333 ACTCAGCCAGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGATTCGGTCCCCCTGCGTGCTACC
65 ATTCAGCC-GGCTGAGAAGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTGCGTGCTACC
32055398 GAT-C-CTGCTGTCACAACACTCGATCCGATCCGATCTTAGACTGGAATGAACTCCGTATGCTTA
129 GATCCTCTGCTGTCACAACACTCGATCCGATCCGATCTTAGACTGGAATGAACTCCGTATGCTTA
* * *
32055461 GACAAGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAACCGGC
194 GACAAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAACCGAC
* * * * *
32055526 CGATGAGGCAGAATGCGCAAGCCGAGGATCGACCCAGTCCCCCCTGCGTGCTGTCGATCCTGTTG
259 CGAAGAGGCAGAATGCGCAACCCGAGGATCGACCCAGTCCCCCCTGCGTGCTATCGATCCTGCTA
* * *
32055591 TCGCAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGACTAAGTCAACCCAC
324 CCACAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCCATATGACTAAGTCAACCCAC
* ** * *
32055656 AAAACGAGCGGGCGGGCGTGAGCCGATCGAAAAGGTAAAATGCGCAAGTCAGGGATCAGCCCGGT
389 AAAACAAGCGGAAGGGCCTGAGCCGATCGAAAAGGCAAAATGCGCAAGTCAGGGATCAGCCCGGT
** * *
32055721 CACCCTCTGTGTGCTGTCAGTCTCGCTGCCACAACCCTCGATCCA
454 CACCCTCTAAGTGCTGTCAGTCCCACTGCCACAACCCTCGATCCA
32055766 GCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATAGGCGTGCGGGC
1 GCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAT-GGCGTGCGGGC
* * * *
32055831 ATTCAGCCGGCTAGAGAAGCAGAATGTGCAAGTCGGGGATCGGCCCGGTCCCCCTGTGTGCTGCC
65 ATTCAGCCGGCT-GAGAAGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTGCGTGCTACC
* *
32055896 GATCCTGCTGCTGGTCCTGCTACCGCAACCCTCGATTCGATCCGATCTTAGACTGAGAATGAACT
129 GATCCT-CTGCT-G---T-C-A---CAACACTCGATCCGATCCGATCTTAGACTG-GAATGAACT
* * * **
32055961 CCGTATGCTTAGACATGGAATGAACTCCGTATGGCTAAGCCAACCCACGAAACGAGTGTGTGGGC
183 CCGTATGCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGC
** * * * * *
32056026 GCTCAGTCGATCGAAGAGGTAGAATGCGCAACCCGAGGATTGGCCC-GATCCCTCCCTGTGTGCT
248 GCTCAACCGACCGAAGAGGCAGAATGCGCAACCCGAGGATCGACCCAG-TCCC-CCCTGCGTGCT
* *
32056090 ATCGATCCTGCTACCACAACCCTCGATCTGAT-TCGATCTTAGACTGGGAGTGAACTCCATATGA
311 ATCGATCCTGCTACCACAACCCTCGATCCGATCT-GATCTTAGACTGGGAATGAACTCCATATGA
* * * * *
32056154 CTAAGTCAACCCACGAAACAAGCGTAAGGGCACTGAGCCGATCGGAGAGGCATAATGCGCAAGTC
375 CTAAGTCAACCCACAAAACAAGCGGAAGGGC-CTGAGCCGATCGAAAAGGCAAAATGCGCAAGTC
* * *
32056219 AGGGATC-GACCCGGTC-CCCTCTAAGTGCTGTCGGTCCCACTGCCACAACCCTCGGTCCG
439 AGGGATCAG-CCCGGTCACCCTCTAAGTGCTGTCAGTCCCACTGCCACAACCCTCGATCCA
* * * *
32056278 GTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCTAACCCATGAAACGGATGTGCGGGC
1 GCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGG-CGTGCGGGC
* * * *
32056343 ATTCAGTCGACCTGAGATG-AGAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCCTGCGTGCTAC
65 ATTCAGCCG-GCTGAGAAGCAGAATGCGCAAGCCGGGGATCGGCCCGGT-CCCCCTGCGTGCTAC
* * * * *
32056407 CGAT-C-CTACT-ACAGCAACCCTCTG-TCCGATCTGATCTTAGACTGGGAATGAACTTCGTATG
128 CGATCCTCTGCTGTCA-CAACACTC-GATCCGATCCGATCTTAGACT-GGAATGAACTCCGTATG
32056468 CT
190 CT
32056470 GAAGTCAACC
Statistics
Matches: 601, Mismatches: 78, Indels: 48
0.83 0.11 0.07
Matches are distributed among these distances:
497 2 0.00
498 111 0.18
499 2 0.00
500 43 0.07
501 7 0.01
502 2 0.00
503 1 0.00
505 1 0.00
506 1 0.00
507 1 0.00
509 4 0.01
510 29 0.05
511 138 0.23
512 215 0.36
513 44 0.07
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.20
Consensus pattern (498 bp):
GCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGCGTGCGGGCA
TTCAGCCGGCTGAGAAGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTGCGTGCTACCGA
TCCTCTGCTGTCACAACACTCGATCCGATCCGATCTTAGACTGGAATGAACTCCGTATGCTTAGA
CAAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAACCGACCG
AAGAGGCAGAATGCGCAACCCGAGGATCGACCCAGTCCCCCCTGCGTGCTATCGATCCTGCTACC
ACAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCCATATGACTAAGTCAACCCACAA
AACAAGCGGAAGGGCCTGAGCCGATCGAAAAGGCAAAATGCGCAAGTCAGGGATCAGCCCGGTCA
CCCTCTAAGTGCTGTCAGTCCCACTGCCACAACCCTCGATCCA
Found at i:32056565 original size:315 final size:312
Alignment explanation
Indices: 32055967--32056787 Score: 877
Period size: 315 Copynumber: 2.6 Consensus size: 312
32055957 AACTCCGTAT
* * * **
32055967 GCTTAGACATGGAATGAACTCCGTATGGCTAAGCCAACCCACGAAAC-GAGTGTGTGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGA-TGTGCGGGCATTCA
* * * * * *
32056031 GTCGATCGAAGAGGTAGAATGCGCAACCCGAGGATTGGCCCGATCCCTCCCTGTGTGCTATCGAT
65 GTCGA-CG-AGAGGCAGAATGCGCAAGCCGGGGATTGGCCCGGTCCC-CCCTGCGTGCTACCGAT
* * * *
32056096 CCTGCTACCA-CAACCCTCGATCTGATTCGATCTTAGACTGGGAGTGAACTCCATATGACT-AAG
127 CCTACTA-CAGCAACCCTCG-TCCGATT-GATCTTAGACTGGGAATGAACTCCGTATG-CTGAAG
* * * * * *
32056159 TCAACCCACGAAACAAGCGTAAGGGCACTGAGCCGATCGGAGAGGCATAATGCGCAAGTCAGGGA
188 TCAACCCACGAAACAAGCGTAAGAGCACTGAACCGACCGAAGAGGCATAATACGCAAGCCAGGGA
* * * *
32056224 TCGACCCGGTCCCCTCTAAGTGCTGTCGGTCCCACTGCCACAACCCTCGGTCCGGTTGGG
253 TCGACCCGATCCCCTCTAAGTGCTGTCGGTCCCACTGCCACAACCCTCAGTCCAGCTGGG
* *
32056284 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCTAACCCATGAAACGGATGTGCGGGCATTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGATGTGCGGGCATTCAG
* **
32056349 TCGACCTGAGATG-AGAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCCTGCGTGCTACCGATCC
66 TCGA-C-GAGAGGCAGAATGCGCAAGCCGGGGATTGGCCCGGTCCCCCCTGCGTGCTACCGATCC
*
32056413 TACTACAGCAACCCTCTGTCCGATCTGATCTTAGACTGGGAATGAACTTCGTATGCTGAAGTCAA
129 TACTACAGCAACCCTC-GTCCGAT-TGATCTTAGACTGGGAATGAACTCCGTATGCTGAAGTCAA
* * * ** *
32056478 CCTACGAAACGAGTGTGCGAGCACTGAACCGGCCGAAGA-GCATAATACGCAAGCC-GAGGATCG
192 CCCACGAAACAAGCGTAAGAGCACTGAACCGACCGAAGAGGCATAATACGCAAGCCAG-GGATCG
* * * * * *
32056541 GCTCGATCCCCTTCTGCA-TGCTGTCGGTCCCACTGCCATAGCCCTCAGTCTAGCTGGG
256 ACCCGATCCCC-TCT-AAGTGCTGTCGGTCCCACTGCCACAACCCTCAGTCCAGCTGGG
* **
32056599 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCGGGCACTTAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGATGTGCGGGCA-TT--
* * * * *
32056664 CCAGTCGA--AGAGGCAGAATGTGCAAGCTGGGGATTGGCCCGGTCCCCCATGCATGCTACTGAT
63 -CAGTCGACGAGAGGCAGAATGCGCAAGCCGGGGATTGGCCCGGTCCCCCCTGCGTGCTACCGAT
* * * * * *
32056727 CCTACTGCCGTAACCCTCAGTCCGGTTTGATCTTATACTGGGAATTAACTCCGTATGCTGA
127 CCTACTACAGCAACCCTC-GTCC-GATTGATCTTAGACTGGGAATGAACTCCGTATGCTGA
32056788 GATTGGGGAT
Statistics
Matches: 425, Mismatches: 64, Indels: 31
0.82 0.12 0.06
Matches are distributed among these distances:
313 1 0.00
314 32 0.08
315 192 0.45
316 124 0.29
317 66 0.16
318 3 0.01
319 7 0.02
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.20
Consensus pattern (312 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGATGTGCGGGCATTCAG
TCGACGAGAGGCAGAATGCGCAAGCCGGGGATTGGCCCGGTCCCCCCTGCGTGCTACCGATCCTA
CTACAGCAACCCTCGTCCGATTGATCTTAGACTGGGAATGAACTCCGTATGCTGAAGTCAACCCA
CGAAACAAGCGTAAGAGCACTGAACCGACCGAAGAGGCATAATACGCAAGCCAGGGATCGACCCG
ATCCCCTCTAAGTGCTGTCGGTCCCACTGCCACAACCCTCAGTCCAGCTGGG
Found at i:32056771 original size:158 final size:157
Alignment explanation
Indices: 32055968--32056784 Score: 536
Period size: 158 Copynumber: 5.2 Consensus size: 157
32055958 ACTCCGTATG
* * * *
32055968 CTTAGACAT-GGAATGAACTCCGTATGGCTAAGCCAACCCACGAAACGAGTGTGTGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCACTGAG
* * * * * * * **
32056032 TCGATCGAAGAGGTAGAATGCGCAACCCGAGGATTGGCCCGATCCCTCCCTGTGTGCTA-TCGAT
65 CCG-TCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCC-CCATGCATGCTACT-GAT
* * * * *
32056096 CCTGCTACCACAACCCTC-GATCTGATTCGAT
127 CCTACTGCCACAACCCTCAG-TCCGGTTGGAT
* * * * * * **
32056127 CTTAGACTGGGAGTGAACTCCATATGACTAAGTCAACCCACGAAACAAGCGTAAGGGCACTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCACTGAGC
* * * * * *
32056192 CGATCGGAGAGGCATAATGCGCAAGTCAGGGATCGACCCGGTCCCCTCTAAGTGC-TG-T-C-GG
66 CG-TCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCC-C--A-TGCATGCTACTGA
* * **
32056253 TCCCACTGCCACAACCCTCGGTCCGGTTGGGG
126 TCCTACTGCCACAACCCTCAGTCCGGTTGGAT
* * * * *
32056285 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCTAACCCATGAAACG-GATGTGCGGGCATTCA
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAG-TGTGCGGGCACTGA
* * * * * * *
32056348 GTCGACCTG-AGATG-AGAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCCTGCGTGCTACCGAT
64 GCCG-TC-GAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCATGCATGCTACTGAT
* * *
32056411 CCTACT-ACAGCAACCCTCTGTCCGATCT-GAT
127 CCTACTGCCA-CAACCCTCAGTCCGGT-TGGAT
* * * * *
32056442 CTTAGACTGGGAATGAACTTCGTATG-CTGAAGTCAACCTACGAAACGAGTGTGCGAGCACTGAA
1 CTTAGACTGGGAATGAACTCCGTATGCCT-AAGCCAACCCACGAAACGAGTGTGCGGGCACTGAG
* * * * * * * *
32056506 CCGGCCGAAGA-GCATAATACGCAAGCCGAGGATCGGCTCGATCCCCTTC-TGCATGCT-GTCGG
65 CC-GTCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCC--CATGCATGCTACT-GA
* * * ** * **
32056568 TCCCACTGCCATAGCCCTCAGTCTAGCTGGGG
126 TCCTACTGCCACAACCCTCAGTCCGGTTGGAT
* * * * *
32056600 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCGGGCACTTAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCACTGAG
* * *
32056664 CCAGTCGAAGAGGCAGAATGTGCAAGCTGGGGATTGGCCCGGTCCCCCATGCATGCTACTGATCC
65 CC-GTCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCATGCATGCTACTGATCC
** *
32056729 TACTGCCGTAACCCTCAGTCCGGTTTGAT
129 TACTGCCACAACCCTCAGTCCGGTTGGAT
* *
32056758 CTTATACTGGGAATTAACTCCGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
32056785 TGAGATTGGG
Statistics
Matches: 499, Mismatches: 126, Indels: 67
0.72 0.18 0.10
Matches are distributed among these distances:
153 3 0.01
154 2 0.00
155 1 0.00
156 9 0.02
157 134 0.27
158 220 0.44
159 125 0.25
160 1 0.00
161 2 0.00
162 2 0.00
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.20
Consensus pattern (157 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCACTGAGC
CGTCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCATGCATGCTACTGATCCTA
CTGCCACAACCCTCAGTCCGGTTGGAT
Found at i:32056958 original size:26 final size:26
Alignment explanation
Indices: 32056929--32056981 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
32056919 CCGGTCTGAT
32056929 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
32056955 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
32056981 C
1 C
32056982 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:32057032 original size:171 final size:171
Alignment explanation
Indices: 32056734--32057053 Score: 426
Period size: 171 Copynumber: 1.9 Consensus size: 171
32056724 GATCCTACTG
* * * * *
32056734 CCGTAACCCTCAGTCCGGTTTGATCTTATACTGGGAATTAACTCCGTATGCTGAGATTGGGGATG
1 CCGTAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTGAGAATGGGAATG
* *
32056799 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGTTCAGCCAACCAGAGAGGCAG
66 AACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGCCAACCAGAGAGGCAG
* **
32056864 GATGCGTAAGCCGAGGATCAAACAGGTGGTAGGTCCTGTCA
131 AATGCACAAGCCGAGGATCAAACAGGTGGTAGGTCCTGTCA
* *
32056905 CCGTAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAT-GGAAT
1 CCGTAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTGAGA-ATGGGAAT
* * * * * ** **
32056969 GAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGTGGGCGCTCAGTCGGCTGGAGAGGCA
65 GAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGCCAACCAGAGAGGCA
*
32057034 GAATGCACAAGCCGGGGATC
130 GAATGCACAAGCCGAGGATC
32057054 GGCCCAGTCC
Statistics
Matches: 126, Mismatches: 22, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
171 125 0.99
172 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.29, T:0.21
Consensus pattern (171 bp):
CCGTAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTGAGAATGGGAATG
AACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGCCAACCAGAGAGGCAG
AATGCACAAGCCGAGGATCAAACAGGTGGTAGGTCCTGTCA
Found at i:32057256 original size:159 final size:157
Alignment explanation
Indices: 32056955--32057457 Score: 530
Period size: 159 Copynumber: 3.2 Consensus size: 157
32056945 ACTCCGTATG
* *
32056955 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGTGGGCGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGAGGGCG-TCAGT
* * * * *
32057020 CGGCTGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCAGTCCCACCCTACGTGCTGTCGATCC
65 CAGCCGGAGAGGCAGAATGCACAAGCCGAGGATCGGCCCGGTCCC-CCCTGCGTGCTGTCGATCC
*
32057085 TGCTGTCGCAACCCTCGGTCCGGTTCGAT
129 TGCTGCCGCAACCCTCGGTCCGGTTCGAT
* * * * * *
32057114 CTTAGAC-TGGGAATGAACTCTGTATGTCTAAGTCAACCCACGAAACGAGCGTGCGGGCGTTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGAGGGCG-TCAG
* * ** * * * *
32057178 -CTAGCCAGAGAGGCATAATGCGTAAGTCGATGATCGACCCGGTCCCCCTCTGCGTGCTATCGAT
64 TC-AGCCGGAGAGGCAGAATGCACAAGCCGAGGATCGGCCCGGTCCCCC-CTGCGTGCTGTCGAT
* * * * **
32057242 CCCGCTGCCACAACCCTCAGTCCGGTTGGGG
127 CCTGCTGCCGCAACCCTCGGTCCGGTTCGAT
*
32057273 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACG-GACGTGTAGAGGC-TCA
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAG-CGTG-AG-GGCGTCA
* * *
32057336 GTCAGTCGGAGAGGCAGAATGCACAAGCCGAGGATCGGCCTGGTCCCCCCTGCGTGCTGCCGATC
63 GTCAGCCGGAGAGGCAGAATGCACAAGCCGAGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATC
* * * * *
32057401 TTGCAGCCGCAACCCTCGGTCTGGTCCAAT
128 CTGCTGCCGCAACCCTCGGTCCGGTTCGAT
* *
32057431 CTTAGAC-TGGGGATGAACTCTGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
32057458 TTAGACTGGG
Statistics
Matches: 275, Mismatches: 60, Indels: 19
0.78 0.17 0.05
Matches are distributed among these distances:
157 1 0.00
158 60 0.22
159 208 0.76
160 3 0.01
161 3 0.01
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.20
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGAGGGCGTCAGTC
AGCCGGAGAGGCAGAATGCACAAGCCGAGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCTG
CTGCCGCAACCCTCGGTCCGGTTCGAT
Found at i:32057417 original size:673 final size:669
Alignment explanation
Indices: 32056284--32057570 Score: 1627
Period size: 673 Copynumber: 1.9 Consensus size: 669
32056274 TCCGGTTGGG
* * *
32056284 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCTAACCCATGAAACGGATGTGCGGGCATTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGACGTGCGGGCACTCAG
* * * *
32056349 TCGACCTGAGATGAGAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCCTGCGTGCTACCGATCCT
66 TCGACCTGAGAGGAGAATGCACAAGCCGGGGATCAGCCCAGTCCCCCCTACGTGCTACCGATCCT
*
32056414 ACTACAGCAACCCTCTGTCCGATCTGATCTTAGACTGGGAATGAACTTCGTATGCTGAAGTCAAC
131 ACTACAGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTTCGTATGCTGAAGTCAAC
* * * * *
32056479 CTACGAAACGAGTGTGCGAGCACTGAACCGGCCGAAGAGCATAATACGCAAGCCGAGGATCGGCT
196 CCACGAAACGAGCGTGCGAGCACTGAACCAGCCGAAGAGCATAATACGCAAGCCGAGGATCGACC
* * * * * *
32056544 CGATCCCCTTCTGCATGCTGTCGGTCCCACTGCCATAGCCCTCAGTCTAGCTGGGGCTTAGACAT
261 CGATCCCCCTCTGCATGCTATCGATCCCACTGCCACAACCCTCAGTCCAGCTGGGGCTTAGACAT
* * *
32056609 GGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCGGGCACTTAGCCAGTCGAAG
326 GGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGACGTGAGGG-ACTCAGCCAGTCGAAG
** * * * * * *
32056674 AGGCAGAATGTGCAAGCTGGGGATTGGCCCGGTCCCCCATGCATGCTACTGATCCTACTGCCGTA
390 AGGCAGAATGCACAAGCCGAGGATCGGCCCGGTCCCCCATGCATGCTACCGATCCTACAGCCGCA
*** * * *
32056739 ACCCTCAGTCCGGTTTGATCTTATACTGGGAATTAACTCCGTATGCTGAGATTGGGGATGAACTC
455 ACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTGAGACTGGGGATGAACTC
*
32056804 CGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGTTCAGCCAACCAGAGAGGCAGGATGC
520 CGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGCCAACCAGAGAGGCAGGATGC
32056869 GTAAGCCGAGGATCAAACAGGTGGTAGGTCCTGTCACCGTAACCCTCGGTCCGGTCTGATCTTAG
585 GTAAGCCGAGGATCAAACAGGTGGTAGGTCCTGTCACCGTAACCCTCGGTCCGGTCTGATCTTAG
32056934 ACTGGGAATGAACTCCGTAT
650 ACTGGGAATGAACTCCGTAT
* * * *
32056954 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAA-TGAGCGTGTGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGA-CGTGCGGGCACTCA
* * **
32057018 GTCG-GCTGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCAGTCCCACCCTACGTGCTGTCGA
65 GTCGACCT-GAGAGG-AGAATGCACAAGCCGGGGATCAGCCCAGTCCC-CCCTACGTGCTACCGA
* * *
32057082 TCCTGCTGTC-GCAACCCTCGGTCCGGT-TCGATCTTAGACTGGGAATGAAC-TCTGTATGTCT-
127 TCCTACT-ACAGCAACCCTCGGTCCGATCT-GATCTTAGACTGGGAATGAACTTC-GTATG-CTG
* ** * * * * *
32057143 AAGTCAACCCACGAAACGAGCGTGCGGGCGTTGAGCTAGCC-AGAGAGGCATAATGCGTAAGTCG
188 AAGTCAACCCACGAAACGAGCGTGCGAGCACTGAACCAGCCGA-AGA-GCATAATACGCAAGCCG
* * * * * *
32057207 ATGATCGACCCGGTCCCCCTCTGCGTGCTATCGATCCCGCTGCCACAACCCTCAGTCCGGTTGGG
251 AGGATCGACCCGATCCCCCTCTGCATGCTATCGATCCCACTGCCACAACCCTCAGTCCAGCTGGG
**
32057272 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGACGTGTAGAGG-CTCA
316 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGACGTG-AG-GGACTCA
* * * * * *
32057336 GTCAGTCGGAGAGGCAGAATGCACAAGCCGAGGATCGGCCTGGTCCCCCCTGCGTGCTGCCGATC
379 GCCAGTCGAAGAGGCAGAATGCACAAGCCGAGGATCGGCCCGGTCCCCCATGCATGCTACCGATC
* * * * * * *
32057401 TTGCAGCCGCAACCCTCGGTCTGGTCCAATCTTAGACTGGGGATGAACTCTGTATGCTTAGACTG
444 CTACAGCCGCAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTGAGACTG
* * * * *
32057466 GGGATGAACTCCGTATGCCTAAGTCCACCCATGAAATGAGCGTGCGGGCGCTCAGCCGACCAGAG
509 GGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGCCAACCAGAG
* * * *
32057531 AGGCAGGATGCGTAAGCGGGGGATCGAACGGGTGGTAGGT
574 AGGCAGGATGCGTAAGCCGAGGATCAAACAGGTGGTAGGT
32057571 GGGTTCAAGC
Statistics
Matches: 519, Mismatches: 86, Indels: 21
0.83 0.14 0.03
Matches are distributed among these distances:
669 4 0.01
670 63 0.12
671 33 0.06
672 96 0.18
673 320 0.62
674 1 0.00
675 2 0.00
ACGTcount: A:0.24, C:0.28, G:0.28, T:0.20
Consensus pattern (669 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGACGTGCGGGCACTCAG
TCGACCTGAGAGGAGAATGCACAAGCCGGGGATCAGCCCAGTCCCCCCTACGTGCTACCGATCCT
ACTACAGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTTCGTATGCTGAAGTCAAC
CCACGAAACGAGCGTGCGAGCACTGAACCAGCCGAAGAGCATAATACGCAAGCCGAGGATCGACC
CGATCCCCCTCTGCATGCTATCGATCCCACTGCCACAACCCTCAGTCCAGCTGGGGCTTAGACAT
GGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGACGTGAGGGACTCAGCCAGTCGAAGA
GGCAGAATGCACAAGCCGAGGATCGGCCCGGTCCCCCATGCATGCTACCGATCCTACAGCCGCAA
CCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTGAGACTGGGGATGAACTCC
GTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGCCAACCAGAGAGGCAGGATGCG
TAAGCCGAGGATCAAACAGGTGGTAGGTCCTGTCACCGTAACCCTCGGTCCGGTCTGATCTTAGA
CTGGGAATGAACTCCGTAT
Found at i:32057460 original size:26 final size:26
Alignment explanation
Indices: 32057431--32057483 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
32057421 CTGGTCCAAT
*
32057431 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
32057457 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
32057483 C
1 C
32057484 CTAAGTCCAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.23, C:0.19, G:0.30, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCGTATG
Found at i:32058512 original size:26 final size:26
Alignment explanation
Indices: 32058471--32058523 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
32058461 CTCATCCAAT
*
32058471 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
32058497 CTTAGACTAGGG-ATGAATTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
32058523 C
1 C
32058524 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:32058707 original size:26 final size:26
Alignment explanation
Indices: 32058678--32058729 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
32058668 CCGATCTGGT
32058678 CTTAGA-ATGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
32058704 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
32058730 TCTAAGCCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.31, C:0.15, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:32059006 original size:158 final size:158
Alignment explanation
Indices: 32058704--32059039 Score: 408
Period size: 158 Copynumber: 2.1 Consensus size: 158
32058694 ACTCCGTATG
* * * *
32058704 CTTAGACAT-GGAATGAACTTCGTATGTCTAAGCCAACCCACAAAATGAGCGTGCGGGCGCTCAA
1 CTTAGAC-TGGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAA
** * * ** *
32058768 CCGGCCGGAGAGGCAGAATGCACAAGCCAGGGATCGGCCTGGTCCCCCTTTTATGCTAACGATCT
65 CAAGCCGGAGAGGCAGAATGCACAAGCCAGGGATCGACATGGTCCCCCTTGCATGCTAACGATCC
* *
32058833 TGCTACCACAACCCTTGGTCCGGTCT-GAT
130 TGCTACCACAACCCTTAGTCCAGT-TAGAT
*
32058862 CTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCGGGCGCTCAAC
1 CTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAAC
* * * * * *
32058927 AAGCTGGAGAGGCAGAATGCGCAAGCCGGGGATCGACATGGTCCCCGTTGCGTGCT-GCTGATCC
66 AAGCCGGAGAGGCAGAATGCACAAGCCAGGGATCGACATGGTCCCCCTTGCATGCTAAC-GATCC
* ** *
32058991 TGCTGCTTCAGCCCTTAGTCCAGTTAGAT
130 TGCTACCACAACCCTTAGTCCAGTTAGAT
32059020 CTTAGACTGGGAATGAACTC
1 CTTAGACTGGGAATGAACTC
32059040 TGTATGCTTA
Statistics
Matches: 151, Mismatches: 24, Indels: 6
0.83 0.13 0.03
Matches are distributed among these distances:
157 3 0.02
158 148 0.98
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.21
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAAC
AAGCCGGAGAGGCAGAATGCACAAGCCAGGGATCGACATGGTCCCCCTTGCATGCTAACGATCCT
GCTACCACAACCCTTAGTCCAGTTAGAT
Found at i:32059056 original size:26 final size:26
Alignment explanation
Indices: 32059020--32059072 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
32059010 CCAGTTAGAT
*
32059020 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
32059046 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
32059072 C
1 C
32059073 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:32060665 original size:26 final size:26
Alignment explanation
Indices: 32060627--32060679 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
32060617 CTAGTTTGAT
32060627 CTTAGAATGGGAATGAACT-TCGTATG
1 CTTAGAATGGGAATGAACTCT-GTATG
32060653 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGA-ATGGGAATGAACTCTGTATG
32060679 C
1 C
32060680 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCTGTATG
Found at i:32061156 original size:26 final size:26
Alignment explanation
Indices: 32061120--32061172 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
32061110 CTGGTCTGAT
*
32061120 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
32061146 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
32061172 C
1 C
32061173 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:32062498 original size:26 final size:26
Alignment explanation
Indices: 32062469--32062521 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
32062459 CCGATTTGAT
32062469 CTTAGACTGGGAATGAACTCCGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
* * *
32062495 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
32062521 C
1 C
32062522 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:32062694 original size:26 final size:26
Alignment explanation
Indices: 32062665--32062717 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
32062655 CCGATCCGAT
32062665 CTTAGACTAGGAATAAACTCCGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
* * *
32062691 CTTAGACTAGGGATGAACTTCGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
32062717 C
1 C
32062718 CTACGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATAAACTCCGTATG
Found at i:32063870 original size:26 final size:26
Alignment explanation
Indices: 32063841--32063890 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
32063831 TGGTTCGATA
*
32063841 TTAGACTAGGAATGAACTCTGTATAC
1 TTAGACTAGGAATGAACTCCGTATAC
* *
32063867 TTAGACTGGGGATGAACTCCGTAT
1 TTAGACTAGGAATGAACTCCGTAT
32063891 GCCTAAGTCA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTCCGTATAC
Found at i:32064647 original size:97 final size:97
Alignment explanation
Indices: 32064479--32064654 Score: 244
Period size: 97 Copynumber: 1.8 Consensus size: 97
32064469 CCTATATGTT
* * * * * *
32064479 CTGCCAATCCCGCTGTCATAACCCTCGGTCTGGCTGGGGCCTAGACATGGAATGAACTCCCTATG
1 CTGCCAATCCCGCTGCCACAACCCTCAGTCCGACTAGGGCCTAGACATGGAATGAACTCCCTATG
32064544 CATAAGCCAACCCAAGCCAACCCTCGATCCCG
66 CATAAGCCAACCCAAGCCAACCCTCGATCCCG
** * * *
32064576 CTGCCAATCTTGCTGCCACAACCCTCAGTCCGACTAGGGCTTAGACATGGAATGAACTTCGTATG
1 CTGCCAATCCCGCTGCCACAACCCTCAGTCCGACTAGGGCCTAGACATGGAATGAACTCCCTATG
*
32064641 CCTAAGCCAACCCA
66 CATAAGCCAACCCA
32064655 TGAAACAAGG
Statistics
Matches: 67, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
97 67 1.00
ACGTcount: A:0.25, C:0.35, G:0.20, T:0.20
Consensus pattern (97 bp):
CTGCCAATCCCGCTGCCACAACCCTCAGTCCGACTAGGGCCTAGACATGGAATGAACTCCCTATG
CATAAGCCAACCCAAGCCAACCCTCGATCCCG
Found at i:32065485 original size:26 final size:26
Alignment explanation
Indices: 32065444--32065496 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32065434 CTGGTCTGAT
32065444 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
32065470 CTTAGACTA-GAGATGAACTTCGTATG
1 CTTAGACTAGGA-ATGAACTCCGTATG
32065496 C
1 C
32065497 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 2 0.08
26 23 0.92
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:32066067 original size:26 final size:26
Alignment explanation
Indices: 32066038--32066087 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
32066028 GTCTGATGTG
*
32066038 AGACTGGGAATGAACTCTGTATGCTT
1 AGACTGGGAATGAAATCTGTATGCTT
*
32066064 AGACTGGGGATGAAATCTGTATGC
1 AGACTGGGAATGAAATCTGTATGC
32066088 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.14, G:0.30, T:0.28
Consensus pattern (26 bp):
AGACTGGGAATGAAATCTGTATGCTT
Found at i:32066800 original size:26 final size:25
Alignment explanation
Indices: 32066764--32066840 Score: 109
Period size: 26 Copynumber: 3.0 Consensus size: 25
32066754 GCTCAAACTT
32066764 TTAGACATGGAATGAACTCCGTATGC
1 TTAGACATGGAATGAACTCC-TATGC
*
32066790 TTAGACATGGAATGAACTCTATATGC
1 TTAGACATGGAATGAACTC-CTATGC
* *
32066816 TTAGACATGAAATGAATTCCTATGC
1 TTAGACATGGAATGAACTCCTATGC
32066841 CTAAGCCAAC
Statistics
Matches: 46, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
25 5 0.11
26 41 0.89
ACGTcount: A:0.34, C:0.17, G:0.19, T:0.30
Consensus pattern (25 bp):
TTAGACATGGAATGAACTCCTATGC
Found at i:32067181 original size:26 final size:26
Alignment explanation
Indices: 32067143--32067195 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32067133 CCGATCTGAT
32067143 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
32067169 CTTAGACAT-GGAATGAACTTCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
32067195 C
1 C
32067196 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:32067674 original size:141 final size:141
Alignment explanation
Indices: 32067407--32067674 Score: 320
Period size: 141 Copynumber: 1.9 Consensus size: 141
32067397 GCTTAGACAT
* *
32067407 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCATACGGGTGCCCAGTCGACCGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCATACGGGTGCCCAGCCGACCGAAG
* * * * *
32067472 AGGCAAAATAAGCAAGTCGGGGATCGGCCCGGTCCCCCCCTATGTGCTGCCAATCCTGCTGCTGG
66 AGGCAAAATAAGCAAGTCGAGGATCGGCCCGATCCCCCCCTACGTGCTACCAATCCCGCTGCTGG
32067537 TCCTGCTACTG
131 TCCTGCTACTG
* * ** ** **
32067548 GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCATGTGGGTGCTGAGCCGACCGAAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCATACGGGTGCCCAGCCGACCGAAG
* ** * * * * **
32067613 AGGCATAATGCGTAAGTCGAGGATTGGCCCGATCCCCCTCTGCGTGCTACCGGTCCCGCTGC
66 AGGCAAAATAAGCAAGTCGAGGATCGGCCCGATCCCCCCCTACGTGCTACCAATCCCGCTGC
32067675 CACAACCCTC
Statistics
Matches: 103, Mismatches: 24, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
141 103 1.00
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.18
Consensus pattern (141 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCATACGGGTGCCCAGCCGACCGAAG
AGGCAAAATAAGCAAGTCGAGGATCGGCCCGATCCCCCCCTACGTGCTACCAATCCCGCTGCTGG
TCCTGCTACTG
Found at i:32067870 original size:159 final size:160
Alignment explanation
Indices: 32067546--32067883 Score: 378
Period size: 160 Copynumber: 2.1 Consensus size: 160
32067536 GTCCTGCTAC
* * * * * *
32067546 TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCATGTGGGTGCTGAGCCGACCGA
1 TGGGAATGAACTCCATATGCCTAAGCCAACCCATGAAATGAGCATGAGAGCGCTCAGCCGACCGA
* * * * * **
32067611 AGAGGCATAATGCGTAAGTCGAGGATTGGCCCGATCCCCCTCTGCGTGCTACCGGTCCCGCTGCC
66 AGAGGCAGAATGCGTAAGCCAAGGATCGGCCCGATACCCCTCTGCGTGCTACCAATCCCGCTGCC
* *
32067676 ACAACCCTCGGTTCAACTGGGGCTTAGACA
131 ACAACCCTCGGTCCAACTGAGGCTTAGACA
* * *
32067706 T-GGAATGAAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGAGAGCGCTCAGCCGACCG
1 TGGGAATG-AACTCCATATGCCTAAGCCAACCCATGAAATGAGCATGAGAGCGCTCAGCCGACCG
* * * ** *
32067770 AAGAGGCAGAATGTGTAAGCCAAGGATCGGTCCGGTACCCC-CTGCGTGCTGTCAATCCTGCTGC
65 AAGAGGCAGAATGCGTAAGCCAAGGATCGGCCCGATACCCCTCTGCGTGCTACCAATCCCGCTGC
** * *
32067834 CACAACCCTCGGTCCAGTTTGATG-TTAGA-T
130 CACAACCCTCGGTCCA-ACTGAGGCTTAGACA
32067864 TGGGAATGAACTCCATATGC
1 TGGGAATGAACTCCATATGC
32067884 TTAGACTAGG
Statistics
Matches: 147, Mismatches: 28, Indels: 8
0.80 0.15 0.04
Matches are distributed among these distances:
158 12 0.08
159 50 0.34
160 85 0.58
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.20
Consensus pattern (160 bp):
TGGGAATGAACTCCATATGCCTAAGCCAACCCATGAAATGAGCATGAGAGCGCTCAGCCGACCGA
AGAGGCAGAATGCGTAAGCCAAGGATCGGCCCGATACCCCTCTGCGTGCTACCAATCCCGCTGCC
ACAACCCTCGGTCCAACTGAGGCTTAGACA
Found at i:32068604 original size:26 final size:26
Alignment explanation
Indices: 32068566--32068618 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32068556 GGCTCAAACT
*
32068566 CTTAGACTAGGAATGAACTCCTTATG
1 CTTAGACTAGGAATGAACTCCGTATG
32068592 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
32068618 C
1 C
32068619 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:32068944 original size:26 final size:26
Alignment explanation
Indices: 32068908--32068960 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
32068898 CCAGTTAGAT
32068908 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
32068934 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
32068960 C
1 C
32068961 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:32069490 original size:26 final size:26
Alignment explanation
Indices: 32069461--32069513 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
32069451 CCAGTTCGAT
*
32069461 CTTAGACTGGGAATGATCTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* * *
32069487 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
32069513 C
1 C
32069514 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:32070067 original size:26 final size:26
Alignment explanation
Indices: 32070026--32070078 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32070016 CTGGTCTGAT
*
32070026 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
32070052 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
32070078 C
1 C
32070079 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:32071075 original size:26 final size:26
Alignment explanation
Indices: 32071031--32071083 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32071021 CCAGTCTGAT
*
32071031 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
32071057 CTTAGACTAGGG-ATCAACTCCGTATG
1 CTTAGACT-GGGAATCAACTCCGTATG
32071083 C
1 C
32071084 CCAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCGTATG
Found at i:32072853 original size:26 final size:26
Alignment explanation
Indices: 32072815--32072867 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
32072805 GGCTCAAACT
32072815 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
32072841 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
32072867 C
1 C
32072868 CTAAGGCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:32074234 original size:26 final size:25
Alignment explanation
Indices: 32074195--32074246 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
32074185 GGCTCAAACT
32074195 CTTAGACTGGAATGAACTCCGTATG
1 CTTAGACTGGAATGAACTCCGTATG
*
32074220 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGAC-TGGAATGAACTCCGTATG
32074246 C
1 C
32074247 ATAAGCTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTCCGTATG
Found at i:32074820 original size:342 final size:342
Alignment explanation
Indices: 32074194--32074853 Score: 828
Period size: 342 Copynumber: 1.9 Consensus size: 342
32074184 TGGCTCAAAC
* * *
32074194 TCTTAGACTGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCTGTATGCATAAGCTAACCC
1 TCTTAGACTGGAATGAACTCCGTATGCCTAAACATGGAATGAACTCTGTATACATAAGCTAACCC
* ** * * *
32074259 ACAAAACGAGCGTGCGGGCACTCAGCCGGTCAGAGAGGCAGAATGTGCAAGTCAGGGATCGGCTC
66 ACAAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGAGGCAGAATAAGCAAGCCAGGGATCAGCCC
* * *
32074324 GATCCCTCTCTACGTACTGCCAGTCCCGCTGCCACAACCCTCGGTCCGGTTGGGGCTTAGACATG
131 GATCCCTCTCTACGTACTGCCAGTCCCACTGCCACAACCCTCGGTCCGGCTAGGGCTTAGACATG
*
32074389 GAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAGTCGAATGGAAA
196 GAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAGCCGAATGGAAA
* ** * *
32074454 GGCAGAATGCGTAAGCTGGGGATCGACCCGATCCCCCCTGCGTGCTGCTGATCCTGCTGCCGCAA
261 GGCAGAATGCGCAAGCCAGGGATCGACACGATCCCCCCTGCGTGCTACTGATCCTGCTGCCGCAA
32074519 CCCTCGGTCTGGTTCGA
326 CCCTCGGTCTGGTTCGA
* *
32074536 TCTTAGACTGGGAATGAACTCCGTATGCCTAAAC-TAGGGATGAACTCTGTATACCTAAG-TCAA
1 TCTTAGACT-GGAATGAACTCCGTATGCCTAAACAT-GGAATGAACTCTGTATACATAAGCT-AA
* * * * * * *
32074599 CCCACGAAACGAGCGTTCGGGCACTGAGCTGGCCGGAGAGGCATAATAAGTAAGCC-GAGGATCA
63 CCCACAAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGAGGCAGAATAAGCAAGCCAG-GGATCA
* * ** * * * *
32074663 GCCCGGTCCCTTTCTGTGT-GTGTC-GATCCCACTGCCACAGCCCTCGGTCTGGCTAGGGCTTAG
127 GCCCGATCCCTCTCTACGTACTGCCAG-TCCCACTGCCACAACCCTCGGTCCGGCTAGGGCTTAG
* * *
32074726 ACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTGCGGGCGTTCAGCCG-GT
191 ACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAGCCGAAT
** * * * *
32074790 CGGGGAGGTAGAATGCGCAAGCCAGGGATCGGCAGGGTCCCCCCTGCGTGCTACTGATCCTGCT
256 -GGAAAGGCAGAATGCGCAAGCCAGGGATCGACACGATCCCCCCTGCGTGCTACTGATCCTGCT
32074854 TCTGGTCCTG
Statistics
Matches: 268, Mismatches: 44, Indels: 12
0.83 0.14 0.04
Matches are distributed among these distances:
341 2 0.01
342 158 0.59
343 108 0.40
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (342 bp):
TCTTAGACTGGAATGAACTCCGTATGCCTAAACATGGAATGAACTCTGTATACATAAGCTAACCC
ACAAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGAGGCAGAATAAGCAAGCCAGGGATCAGCCC
GATCCCTCTCTACGTACTGCCAGTCCCACTGCCACAACCCTCGGTCCGGCTAGGGCTTAGACATG
GAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAGCCGAATGGAAA
GGCAGAATGCGCAAGCCAGGGATCGACACGATCCCCCCTGCGTGCTACTGATCCTGCTGCCGCAA
CCCTCGGTCTGGTTCGA
Found at i:32074929 original size:26 final size:26
Alignment explanation
Indices: 32074891--32074943 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
32074881 CCAATCCGAT
32074891 CTTAGACTGGGAATGAACT-CTGTATG
1 CTTAGACTGGGAATGAACTAC-GTATG
32074917 CTTAGACAT-GGAATGAACTACGTATG
1 CTTAGAC-TGGGAATGAACTACGTATG
32074943 C
1 C
32074944 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:32075141 original size:207 final size:208
Alignment explanation
Indices: 32074784--32075161 Score: 537
Period size: 207 Copynumber: 1.8 Consensus size: 208
32074774 CGGGCGTTCA
** * * * *
32074784 GCCGGTCGGGGAGGTAGAATGCGCAAGCCAGGGATCGGCAGGGTCCCCCCTGCGTGCTACTGATC
1 GCCGGTCGAAGAGGCAGAATGCACAAGCCAGGGATCGACACGGTCCCCCCT-CGTGCTACTGATC
* * * * *
32074849 CTGCTTCTGGTCCTGCTACCGCAACCCTCGGTCCAATCCGATCTTAGACTGGGAATGAACTCTGT
65 CTGCTACTGGTCCTGCTACCACAACCCTCGATCCAATCCGATCTGAGACTGGGAATGAACTCTAT
32074914 ATGCTTAGACATGGAATGAACTAC-GTATGCCTAAGCCAACCAATGAAATGAGCGTGTGGGTGCT
130 ATGCTTAGACATGGAATGAACT-CTGTATGCCTAAGCCAACCAATGAAATGAGCGTGTGGGTGCT
32074978 CAGTCGATTGGAGCG
194 CAGTCGATTGGAGCG
* * * *
32074993 GCCGGTCGAAGAGGCAGAATGCATAAGCCAGGGTTCGACTCGGTCCCCCCT-GTGCTATTGATCC
1 GCCGGTCGAAGAGGCAGAATGCACAAGCCAGGGATCGACACGGTCCCCCCTCGTGCTACTGATCC
* * **
32075057 TGCTACTGGTCCTGCTGCCATAACCCTCGATCCGGT-CGAATCTGAGACTGGGAATGAACTCTAT
66 TGCTACTGGTCCTGCTACCACAACCCTCGATCCAATCCG-ATCTGAGACTGGGAATGAACTCTAT
32075121 ATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACC
130 ATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACC
32075162 CACAAAACGA
Statistics
Matches: 148, Mismatches: 19, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
206 3 0.02
207 103 0.70
209 42 0.28
ACGTcount: A:0.23, C:0.27, G:0.28, T:0.23
Consensus pattern (208 bp):
GCCGGTCGAAGAGGCAGAATGCACAAGCCAGGGATCGACACGGTCCCCCCTCGTGCTACTGATCC
TGCTACTGGTCCTGCTACCACAACCCTCGATCCAATCCGATCTGAGACTGGGAATGAACTCTATA
TGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCAATGAAATGAGCGTGTGGGTGCTCA
GTCGATTGGAGCG
Found at i:32076255 original size:159 final size:158
Alignment explanation
Indices: 32075846--32076260 Score: 379
Period size: 159 Copynumber: 2.6 Consensus size: 158
32075836 CCAAATTTGG
* *
32075846 TAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGGGCATGCAGGCGCCCAGCCG
1 TAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGGGCGTGCAGGCGCTCAGCCG
* * * * * * * * **
32075911 GTCGGAGAGACAGAATGCGCAAGCCGAGGATCGGCCTAATCCCCCCTGCGTGCTGTCGATCTTGC
66 ATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCAATCCACCCTACGTGCTATCGATCCCGC
* * * *
32075976 TGTCGTAACCTTCAGTTCGGTCCAATCT
131 TGCCATAACCTTCAGTCCGGTCCAAGCT
* * ** * * * * *
32076004 TAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGTGTTTC-GGCGCTGAGC
1 TAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGGGCG-TGCAGGCGCTCAGC
* * * * * * * *
32076067 CAACCGGAGAGGCATAATGTGCAAACCGGGGATCGACCCGATCTCACTCTACGTGCTATCGGTCC
64 CGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCAATC-CACCCTACGTGCTATCGATCC
* ***
32076132 CGCTGCCATAACCCTTGA-TCCGG-CTGGGGCT
128 CGCTGCCATAA-CCTTCAGTCCGGTC-CAAGCT
* * *
32076163 TAGGCATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCAGGCGCTCAACCG
1 TAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGGGCGTGCAGGCGCTCAGCCG
* *
32076228 ATCGAAGAGGTAGAATGCGCAAGCCGGGGATCG
66 ATCGGAGAGGCAGAATGCGCAAGCCGGGGATCG
32076261 GCCTGATCCC
Statistics
Matches: 195, Mismatches: 55, Indels: 13
0.74 0.21 0.05
Matches are distributed among these distances:
157 1 0.01
158 82 0.42
159 106 0.54
160 6 0.03
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.19
Consensus pattern (158 bp):
TAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGGGCGTGCAGGCGCTCAGCCG
ATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCAATCCACCCTACGTGCTATCGATCCCGC
TGCCATAACCTTCAGTCCGGTCCAAGCT
Found at i:32077502 original size:159 final size:156
Alignment explanation
Indices: 32077055--32077537 Score: 459
Period size: 159 Copynumber: 3.0 Consensus size: 156
32077045 TGTCGATCCC
* * * * **
32077055 GCTGTCGGTCTTGCTACCACAACCCTCGGTTTAGCTGGGGCTTAGACACGGAATGAACTCTGTAT
1 GCTGTCGGTCCTGCT-CCACAACCCTCGG-TCAGCTGGAGCTTAGACATGGAATGAACTCCATAT
* * * * *
32077120 GCCTAAGCTAACCCATGAAACGAGCGTGAGGGTGCTCAACCGGCCAGAGAGGTAGAATGCGCAAG
64 GCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAACCGGCCGGAGAGGCAGAATGCGCAAG
* * * * *
32077185 CTGGGGACCGGCCCGGGTCCCCC-CTACGT
129 C-GAGGATC-ACCCCGGTCCCCCTCTGCGT
* * * * * * *
32077214 GCTGTCGATCCTACTACAGCAACCCTCGGTCTGCTATGATCTTAGAC-TAGGAAGGAACTCCATA
1 GCTGTCGGTCCTGCTCCA-CAACCCTCGGTCAGCT-GGAGCTTAGACAT-GGAATGAACTCCATA
* * * * * * * *
32077278 TGCCTATGTCAACCCATGAAACGAGCGTGCGGGCACTGAGCCGGCCGGAGAGGCATAAAGTGCAA
63 TGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAACCGGCCGGAGAGGCAGAATGCGCAA
*
32077343 GTCGAGGATCACCCCAGTCCCCCTCTGCGT
128 G-CGAGGATCACCCCGGTCCCCCTCTGCGT
* * *
32077373 GCTGTCGGTCCCGCTGCCACAACCCTCAGTCCGGCTGGAGCTTAGACATGGAATGAACTCCATAT
1 GCTGTCGGTCCTGCT-CCACAACCCTCGGT-CAGCTGGAGCTTAGACATGGAATGAACTCCATAT
* * * *
32077438 GCCTAAGCCAACCCATGAAATGGGCGTGCGGGCGCTTAACCGGTCGGAGAGGCAGAATGCGCAAG
64 GCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAACCGGCCGGAGAGGCAGAATGCGCAAG
* * **
32077503 CCAGGGATCAGCTTGGTCCCCCT-TGCGT
129 CGA-GGATCACCCCGGTCCCCCTCTGCGT
32077531 GCTGTCG
1 GCTGTCG
32077538 CAACCCTCGA
Statistics
Matches: 258, Mismatches: 57, Indels: 19
0.77 0.17 0.06
Matches are distributed among these distances:
158 30 0.12
159 220 0.85
160 8 0.03
ACGTcount: A:0.22, C:0.30, G:0.29, T:0.19
Consensus pattern (156 bp):
GCTGTCGGTCCTGCTCCACAACCCTCGGTCAGCTGGAGCTTAGACATGGAATGAACTCCATATGC
CTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAACCGGCCGGAGAGGCAGAATGCGCAAGCG
AGGATCACCCCGGTCCCCCTCTGCGT
Found at i:32077595 original size:26 final size:26
Alignment explanation
Indices: 32077559--32077611 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
32077549 CCAGTGTGAT
*
32077559 CTTAGACTGGGAATTAACTCTGTATG
1 CTTAGACTGGGAATAAACTCTGTATG
*
32077585 CTTAGACTGGGGATAAACTCTGTATG
1 CTTAGACTGGGAATAAACTCTGTATG
32077611 C
1 C
32077612 CTAAGTCACC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCTGTATG
Found at i:32078318 original size:26 final size:26
Alignment explanation
Indices: 32078278--32078330 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
32078268 GGCTCAAACT
32078278 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
32078304 CTTAGACATGG-AATGAACTCCGTATG
1 CTTAGAC-TGGAAATGAACTCCGTATG
32078330 C
1 C
32078331 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:32079294 original size:26 final size:26
Alignment explanation
Indices: 32079258--32079310 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
32079248 TCGATCAGAT
32079258 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
32079284 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
32079310 C
1 C
32079311 CTAAGTCATC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:32080316 original size:26 final size:26
Alignment explanation
Indices: 32080275--32080327 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32080265 CCAGTTCGAT
*
32080275 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
32080301 CTTAGACTGAGG-ATGAACTCCGTATG
1 CTTAGACTG-GGAATGAACTCCGTATG
32080327 C
1 C
32080328 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:32081012 original size:26 final size:26
Alignment explanation
Indices: 32080974--32081032 Score: 84
Period size: 26 Copynumber: 2.3 Consensus size: 26
32080964 GGCTCAAACC
*
32080974 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
32081000 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
*
32081026 CCTAGAC
1 CTTAGAC
32081033 CAACCCACGA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
26 29 0.97
27 1 0.03
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:32081552 original size:26 final size:26
Alignment explanation
Indices: 32081514--32081566 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
32081504 CCGGTCTGAT
*
32081514 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATAAACTCCATATG
*
32081540 CTTAGACAT-GGAATAAACTCCGTATG
1 CTTAGAC-TGGGAATAAACTCCATATG
32081566 C
1 C
32081567 CTAATCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCATATG
Found at i:32081579 original size:197 final size:197
Alignment explanation
Indices: 32081230--32081590 Score: 491
Period size: 197 Copynumber: 1.8 Consensus size: 197
32081220 CAACCGGCTG
* * * **
32081230 GAGAGGCAGAATGCGCAAGCTGGGGATCCGCCCGGTCCCTCCTGTGTGCTGCCGATCCTACTGTT
1 GAGAGGCAGAATGCGCAAGCTGAGGATCCGCCCGATCCCTCCTGCGTGCTGCCGATCCTACTGAC
* * * * *
32081295 GCAACCCTCGGTTCGATCTGATCTTACACTGGGAATGAACTCTATATGCTTAAACTGAGGATGAA
66 GCAACCCTCAGTCCGATCTGATCTTACACTGGGAATGAACTCCATATGCTTAAACTGAGAATAAA
32081360 CTCCGTATGACCAAGTCAACCCACGAAACGAGCGTGCGGGCACTAAATCGACCGGAGAGGCTGGC
131 CTCCGTATGACCAAGTCAACCCACGAAACGAGCGTGCGGGCACTAAATCGACCGGAGAGGCTGGC
32081425 CA
196 CA
* *
32081427 GAGAGGTAGAATGCGCAAG-TCGAGGAT-CGACCCGATCCCTCCCTGCGTGCTGCCGATCCTGCT
1 GAGAGGCAGAATGCGCAAGCT-GAGGATCCG-CCCGATCCCT-CCTGCGTGCTGCCGATCCTACT
* * *
32081490 -ACGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACATG-GAA
63 GACGCAACCCTCAGTCCGATCTGATCTTACACTGGGAATGAACTCCATATGCTTAAAC-TGAGAA
32081553 TAAACTCCGTATG-CCTAA-TCCAACCCACGAAACGAGCG
127 TAAACTCCGTATGACC-AAGT-CAACCCACGAAACGAGCG
32081591 GTAAAATGTG
Statistics
Matches: 143, Mismatches: 15, Indels: 12
0.84 0.09 0.07
Matches are distributed among these distances:
196 6 0.04
197 115 0.80
198 22 0.15
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (197 bp):
GAGAGGCAGAATGCGCAAGCTGAGGATCCGCCCGATCCCTCCTGCGTGCTGCCGATCCTACTGAC
GCAACCCTCAGTCCGATCTGATCTTACACTGGGAATGAACTCCATATGCTTAAACTGAGAATAAA
CTCCGTATGACCAAGTCAACCCACGAAACGAGCGTGCGGGCACTAAATCGACCGGAGAGGCTGGC
CA
Found at i:32083252 original size:26 final size:26
Alignment explanation
Indices: 32083211--32083263 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
32083201 TCGGTCACAT
32083211 CTTAGACAGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
* *
32083237 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
32083263 C
1 C
32083264 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Found at i:32083654 original size:21 final size:21
Alignment explanation
Indices: 32083630--32083683 Score: 90
Period size: 21 Copynumber: 2.6 Consensus size: 21
32083620 TCATGTGAAG
*
32083630 TTTCGTGGCAAGACGACCCGT
1 TTTCGTGGCAAGACGACCCAT
*
32083651 TTTCATGGCAAGACGACCCAT
1 TTTCGTGGCAAGACGACCCAT
32083672 TTTCGTGGCAAG
1 TTTCGTGGCAAG
32083684 CCTTCATATG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.22, C:0.26, G:0.26, T:0.26
Consensus pattern (21 bp):
TTTCGTGGCAAGACGACCCAT
Found at i:32083813 original size:26 final size:26
Alignment explanation
Indices: 32083775--32083827 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
32083765 CTGGTCTGAT
32083775 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
32083801 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
32083827 C
1 C
32083828 CTAAGCCAAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:32084095 original size:159 final size:159
Alignment explanation
Indices: 32083801--32084303 Score: 532
Period size: 159 Copynumber: 3.2 Consensus size: 159
32083791 ACTCCGTATG
* * *
32083801 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAGCCACGAAACGAGTGTGCGGGCGCTCAGT
1 CTTAGACATGGAATGAACTCCGCATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
* * * * *
32083866 CGGGCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCCCTGCGTGCTGTCGATCT
66 CGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCTCTGCGTGCTGCCGATCC
*
32083931 TGCTGCTGCAACCCTCTGTCCGATCCGAT
131 TGCTGCTGCAACCCTCGGTCCGATCCGAT
* * * * *
32083960 CTTAGAC-TGGGAATGAACTCCGCATGCCTAAGTCAACCCATGAAATGAGCATGCGGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCGCATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * *
32084024 CCGACCGGAGAGGCATAATGTGCAAGCCGGGGATCGACCCGATCCCCCTCTGCGTGCTGCCGATC
65 TCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCTCTGCGTGCTGCCGATC
* ** * * **
32084089 CCGCTGCCACAACCCTCGGACCGGCTGGGA-
130 CTGCTGCTGCAACCCTCGGTCC-GATCCGAT
* * * *
32084119 ATTAGACATGGAATGAACTCC-CTATGCCTAAGCCAACCCACAAAACGGGCGTGCGGACGCTCAG
1 CTTAGACATGGAATGAACTCCGC-ATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * ** * *
32084183 TCGGCTGGAGAGGCAGAATGCACAAGACGTGGATTGGTCCGAT-CCCCTCTGGGTGCTGCTGATC
65 TCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCTCTGCGTGCTGCCGATC
* * *
32084247 CTACTG-TCGCAACCCTCGGTCCGGTCTGAT
130 CTGCTGCT-GCAACCCTCGGTCCGATCCGAT
* *
32084277 TTTAGAC-TGAGAATGAACTCCGTATGC
1 CTTAGACATG-GAATGAACTCCGCATGC
32084304 TTAGATTGGG
Statistics
Matches: 279, Mismatches: 57, Indels: 17
0.79 0.16 0.05
Matches are distributed among these distances:
157 6 0.02
158 58 0.21
159 210 0.75
160 5 0.02
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.19
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCCGCATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
CGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCTCTGCGTGCTGCCGATCC
TGCTGCTGCAACCCTCGGTCCGATCCGAT
Found at i:32084307 original size:26 final size:26
Alignment explanation
Indices: 32084278--32084327 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
32084268 CGGTCTGATT
32084278 TTAGACTGAGAATGAACTCCGTATGC
1 TTAGACTGAGAATGAACTCCGTATGC
* * *
32084304 TTAGATTGGGGATGAACTCCGTAT
1 TTAGACTGAGAATGAACTCCGTAT
32084328 CCCTAAGTCA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (26 bp):
TTAGACTGAGAATGAACTCCGTATGC
Found at i:32085043 original size:26 final size:26
Alignment explanation
Indices: 32085005--32085057 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
32084995 GGCTCAAACT
32085005 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
32085031 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCTGTATG
32085057 C
1 C
32085058 CTAAGCTAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:32085384 original size:26 final size:26
Alignment explanation
Indices: 32085348--32085400 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
32085338 CCAATTCGAT
32085348 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
32085374 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
32085400 C
1 C
32085401 CAAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:32085507 original size:188 final size:188
Alignment explanation
Indices: 32085260--32085616 Score: 450
Period size: 188 Copynumber: 1.9 Consensus size: 188
32085250 TCAGCCGGCT
* * * ** * * * *
32085260 GGAGAGGCAGAATGCGCAAGTCGGGGATCGGCTTGGTCCCCCCTGCGTGCTGCCGATCCTGCTGC
1 GGAGAGGCAAAATGCGCAAGTCAGAGATCGGCCCGATCCCCCCTACGTACTACCGATCCTGCTG-
* * * * * *
32085325 CT-TAACCTTTGATCCAAT-TCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC-TGGGGA
65 CTGCAACCCTCGATCCAGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAT-AGAA
*
32085387 TGAACTCCGTATGCCAAAGTCAACCCATAAAACAAGCATGCGCAAGCCGGAGAGGCCAGCA
128 TGAACTCCGTATGCCAAAGCCAACCCATAAAACAAGCATGCGCAAGCCGGAGAGGCCAGCA
* *
32085448 GGAGAGGCAAAATGCGCAAGTCAGAGATCGGCCCGATCCCCCCTATGTACTATCGATCCTGCTGC
1 GGAGAGGCAAAATGCGCAAGTCAGAGATCGGCCCGATCCCCCCTACGTACTACCGATCCTGCTGC
* * *
32085513 TGCAACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATAGAATGA
66 TGCAACCCTCGATCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATAGAATGA
* * *
32085578 ACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCG
131 ACTCCGTATGCCAAAGCCAACCCATAAAACAAGCATGCG
32085617 GGCGCTCAGC
Statistics
Matches: 142, Mismatches: 24, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
187 2 0.01
188 138 0.97
189 2 0.01
ACGTcount: A:0.26, C:0.27, G:0.26, T:0.21
Consensus pattern (188 bp):
GGAGAGGCAAAATGCGCAAGTCAGAGATCGGCCCGATCCCCCCTACGTACTACCGATCCTGCTGC
TGCAACCCTCGATCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATAGAATGA
ACTCCGTATGCCAAAGCCAACCCATAAAACAAGCATGCGCAAGCCGGAGAGGCCAGCA
Found at i:32085767 original size:26 final size:26
Alignment explanation
Indices: 32085731--32085783 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
32085721 CCGGTCTGAT
32085731 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
32085757 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
32085783 C
1 C
32085784 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:32091790 original size:26 final size:26
Alignment explanation
Indices: 32091749--32091801 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
32091739 TCGATCTGAT
32091749 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
32091775 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
32091801 C
1 C
32091802 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:32092500 original size:26 final size:26
Alignment explanation
Indices: 32092471--32092523 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32092461 GGCTCAAAAT
*
32092471 CTTAGAC-TGTGAATGAACTTCGTATG
1 CTTAGACATG-GAATGAACTCCGTATG
32092497 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
32092523 C
1 C
32092524 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:32093001 original size:26 final size:26
Alignment explanation
Indices: 32092972--32093024 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
32092962 CCGATCTGAT
32092972 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
32092998 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
32093024 C
1 C
32093025 CTCAGTCAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:32093298 original size:355 final size:352
Alignment explanation
Indices: 32092813--32093479 Score: 829
Period size: 355 Copynumber: 1.9 Consensus size: 352
32092803 TCTAACTACA
* * * *
32092813 GCTTACACATGGAATTAACTCCCTATGAGTAAGCCAACCCACAAAATGGGCGTGCGGGCACTCAA
1 GCTTACACATGGAATGAACTCCCTATGACTAAGCCAACCCACAAAATGAGCGTACGGGCACTCAA
* * * **
32092878 CCGGCTGGAGAGGCAGAATGCACAAGCCGGGGATCAGCCCGGTCCCCCCTGCGTGCTGTCGATCC
66 CCAGCCGGAGAGGCAGAATGCACAAGCCAGGGATCAGCCCGGTCCCCCCTGCGTGCTACCGATCC
* * **
32092943 TACTAAAAAAACCCTCTG-TCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
131 TACTAAAAAAACACTC-GATCCGATCCGATCTTAGACT-GGAATGAACTCCGTATGCTTAGACAA
* * * * * *
32093007 GGGATGAACTCCGTATGCCTCAGTCAAACCGCGAAACGAGCATGCGGGCGCTCAGCCGACCCGA-
194 GGAATGAACTCCGTATGCCTAAGCCAAACCACGAAACGAGCATACGGGCGCTCAACCG-CCCGAT
* * * **
32093071 GAGGCATAATACGTAAGCCGGGGATC-AGCCTGGTCCCCCTCTGCGTGCTGTCAATCCCGCTGCC
258 GAGGCAGAATACGCAAGCCGAGGATCGA-CCCAGT-CCCC-CTGCGTGCTGTCAATCCCGCTGCC
32093135 GGTCCTGTTGTCATAACCCTCGGTTCGGCTGGG
320 GGTCCTGTTGTCATAACCCTCGGTTCGGCTGGG
* ** * * * *
32093168 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCTTACGGGCACTCAG
1 GCTTACACATGGAATGAACTCCCTATGACTAAGCCAACCCACAAAATGAGCGTACGGGCACTCAA
* **
32093233 CCAGCCGGAGAGGCAGAATGCGCAAGCCAGGGATC-GATTCGGTCCCCCCTGCGTGCTACCGATC
66 CCAGCCGGAGAGGCAGAATGCACAAGCCAGGGATCAG-CCCGGTCCCCCCTGCGTGCTACCGATC
* *** *
32093297 CTGCTGTCACAACACTCGATCCGATCCGATCTTAGACTGGAATGAACTCCGTATGCTTAGACAAG
130 CTACTAAAAAAACACTCGATCCGATCCGATCTTAGACTGGAATGAACTCCGTATGCTTAGACAAG
* * * * *
32093362 GAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAACCGGCCGATGA
195 GAATGAACTCCGTATGCCTAAGCCAAACCACGAAACGAGCATACGGGCGCTCAACCGCCCGATGA
* *
32093427 GGCAGAATGCGCAAGCCGAGGATCGACCCAGTCCCCCTGCGTGCTGTCGATCC
260 GGCAGAATACGCAAGCCGAGGATCGACCCAGTCCCCCTGCGTGCTGTCAATCC
32093480 TTGTGTCGCA
Statistics
Matches: 262, Mismatches: 46, Indels: 11
0.82 0.14 0.03
Matches are distributed among these distances:
352 16 0.06
353 8 0.03
354 100 0.38
355 138 0.53
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (352 bp):
GCTTACACATGGAATGAACTCCCTATGACTAAGCCAACCCACAAAATGAGCGTACGGGCACTCAA
CCAGCCGGAGAGGCAGAATGCACAAGCCAGGGATCAGCCCGGTCCCCCCTGCGTGCTACCGATCC
TACTAAAAAAACACTCGATCCGATCCGATCTTAGACTGGAATGAACTCCGTATGCTTAGACAAGG
AATGAACTCCGTATGCCTAAGCCAAACCACGAAACGAGCATACGGGCGCTCAACCGCCCGATGAG
GCAGAATACGCAAGCCGAGGATCGACCCAGTCCCCCTGCGTGCTGTCAATCCCGCTGCCGGTCCT
GTTGTCATAACCCTCGGTTCGGCTGGG
Found at i:32093355 original size:25 final size:26
Alignment explanation
Indices: 32093327--32093378 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
32093317 CCGATCCGAT
*
32093327 CTTAGAC-TGGAATGAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
*
32093352 CTTAGACAAGGAATGAACTCTGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
32093378 C
1 C
32093379 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (26 bp):
CTTAGACAAGGAATGAACTCCGTATG
Found at i:32093524 original size:183 final size:183
Alignment explanation
Indices: 32093168--32093534 Score: 553
Period size: 183 Copynumber: 2.0 Consensus size: 183
32093158 TTCGGCTGGG
* * *
32093168 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCTTACGGGCACTCAG
1 GCTTAGACAAGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCACTCAA
** *
32093233 CCAGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGATTCGGTCCCCCCTGCGTGCTACCGATCC
66 CCAGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCAGTCCCCCCTGCGTGCTACCGATCC
32093298 TGCTGTCACAACACTCGATCCGATCCGATCTTAGACTGGAATGAACTCCGTAT
131 TGCTGTCACAACACTCGATCCGATCCGATCTTAGACTGGAATGAACTCCGTAT
*
32093351 GCTTAGACAAGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAA
1 GCTTAGACAAGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCACTCAA
* **
32093416 CCGGCC-GATGAGGCAGAATGCGCAAGCC-GAGGATCGACCCAGT-CCCCCTGCGTGCTGTCGAT
66 CCAGCCGGA-GAGGCAGAATGCGCAAGCCAG-GGATCGACCCAGTCCCCCCTGCGTGCTACCGAT
* * *
32093478 CCTTG-TGTCGCAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCCGTAT
129 CC-TGCTGTCACAACACTCGATCCGATCCGATCTTAGACT-GGAATGAACTCCGTAT
32093534 G
1 G
32093535 ACTAAGTCAA
Statistics
Matches: 167, Mismatches: 13, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
182 53 0.32
183 114 0.68
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.20
Consensus pattern (183 bp):
GCTTAGACAAGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCACTCAA
CCAGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCAGTCCCCCCTGCGTGCTACCGATCC
TGCTGTCACAACACTCGATCCGATCCGATCTTAGACTGGAATGAACTCCGTAT
Done.