Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 35 of 402
Found at i:7223409 original size:6 final size:6
Alignment explanation
Indices: 7223400--7223429 Score: 51
Period size: 6 Copynumber: 4.8 Consensus size: 6
7223390 TGATATATAA
7223400 TAAAAT TAAAAT ATAAAAT TAAAAT TAAAA
1 TAAAAT TAAAAT -TAAAAT TAAAAT TAAAA
7223430 ATATATGAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
6 17 0.74
7 6 0.26
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (6 bp):
TAAAAT
Found at i:7223431 original size:13 final size:13
Alignment explanation
Indices: 7223399--7223429 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
7223389 TTGATATATA
7223399 ATAAAATTAAAAT
1 ATAAAATTAAAAT
7223412 ATAAAATTAAAAT
1 ATAAAATTAAAAT
7223425 -TAAAA
1 ATAAAA
7223430 ATATATGAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 5 0.28
13 13 0.72
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (13 bp):
ATAAAATTAAAAT
Found at i:7223687 original size:15 final size:15
Alignment explanation
Indices: 7223667--7223706 Score: 62
Period size: 15 Copynumber: 2.7 Consensus size: 15
7223657 TAAAATAACA
*
7223667 AATTTTAATTAATTT
1 AATTTTAAATAATTT
7223682 AATTTTAAATAATTT
1 AATTTTAAATAATTT
*
7223697 AATTTAAAAT
1 AATTTTAAAT
7223707 TAACAAAATT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (15 bp):
AATTTTAAATAATTT
Found at i:7224980 original size:22 final size:22
Alignment explanation
Indices: 7224954--7224999 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
7224944 ATAATATTTT
* *
7224954 AATTTTATTTATAAAGTTTAAA
1 AATTTTATTGATAAAGTATAAA
*
7224976 AATTTTATTGATAATGTATAAA
1 AATTTTATTGATAAAGTATAAA
7224998 AA
1 AA
7225000 ATAGTTCAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.46
Consensus pattern (22 bp):
AATTTTATTGATAAAGTATAAA
Found at i:7227233 original size:153 final size:153
Alignment explanation
Indices: 7226977--7227281 Score: 574
Period size: 153 Copynumber: 2.0 Consensus size: 153
7226967 GTTTTGAAAC
*
7226977 ATGAAGAACACTTTTTATCTAATGTGAGATGCATAACATTTTGAATTACCAATAAATATTCTTCA
1 ATGAAGAACACTTTTTATCTAATGTGAGATGCATAACATTTTGAATTACCAATAAATATTCTGCA
7227042 AATTTAGAGTTTAAATCTTAATATCTACAATCCTTACCCTATCTTAGGTTACCACTTATTTTGTA
66 AATTTAGAGTTTAAATCTTAATATCTACAATCCTTACCCTATCTTAGGTTACCACTTATTTTGTA
7227107 TAAAAAAAATTTTATTACATTTA
131 TAAAAAAAATTTTATTACATTTA
*
7227130 ATGAAGAACACTTTTTATCTAATGTGAGATGCATAACATTTTGAGTTACCAATAAATATTCTGCA
1 ATGAAGAACACTTTTTATCTAATGTGAGATGCATAACATTTTGAATTACCAATAAATATTCTGCA
*
7227195 AGTTTAGAGTTTAAATCTTAATATCTACAATCCTTACCCTATCTTAGGTTACCACTTATTTTGTA
66 AATTTAGAGTTTAAATCTTAATATCTACAATCCTTACCCTATCTTAGGTTACCACTTATTTTGTA
*
7227260 TCAAAAAAATTTTATTACATTT
131 TAAAAAAAATTTTATTACATTT
7227282 TCCTATATAA
Statistics
Matches: 148, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
153 148 1.00
ACGTcount: A:0.36, C:0.15, G:0.09, T:0.40
Consensus pattern (153 bp):
ATGAAGAACACTTTTTATCTAATGTGAGATGCATAACATTTTGAATTACCAATAAATATTCTGCA
AATTTAGAGTTTAAATCTTAATATCTACAATCCTTACCCTATCTTAGGTTACCACTTATTTTGTA
TAAAAAAAATTTTATTACATTTA
Found at i:7227640 original size:17 final size:17
Alignment explanation
Indices: 7227618--7227661 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
7227608 TTAATGAGAT
*
7227618 TATTTTATTTTTTTATG
1 TATTTTATTTTTCTATG
* *
7227635 TATTTTATATTTCTATT
1 TATTTTATTTTTCTATG
7227652 TATTATTATT
1 TATT-TTATT
7227662 ATACATTTTA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
17 18 0.82
18 4 0.18
ACGTcount: A:0.23, C:0.02, G:0.02, T:0.73
Consensus pattern (17 bp):
TATTTTATTTTTCTATG
Found at i:7227798 original size:3 final size:3
Alignment explanation
Indices: 7227790--7227851 Score: 124
Period size: 3 Copynumber: 20.7 Consensus size: 3
7227780 AATTTAAGTA
7227790 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
7227838 TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TA
7227852 ATTCACTGGT
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 59 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:7228142 original size:16 final size:16
Alignment explanation
Indices: 7228123--7228154 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
7228113 TTGGAATTTT
7228123 TATAAGAGAAAGTAAA
1 TATAAGAGAAAGTAAA
7228139 TATAAGAGAAAGTAAA
1 TATAAGAGAAAGTAAA
7228155 AAAAAAATCC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.62, C:0.00, G:0.19, T:0.19
Consensus pattern (16 bp):
TATAAGAGAAAGTAAA
Found at i:7229951 original size:159 final size:159
Alignment explanation
Indices: 7229635--7229937 Score: 437
Period size: 159 Copynumber: 1.9 Consensus size: 159
7229625 ATTTTTGAGG
* *
7229635 TGACAAAGAAAAAGCCAACCAGTTGTTCATGAAAGCCATAAAAATTGAAAAGGTAAGTGTGAAAG
1 TGACAAAGAAAAAGCCAACCAGTTGTTCATGAAAGCCATAAAAATTGAAAAGGTAAATATGAAAG
* * * * *
7229700 ATTTGTGCTTTTATAATGCATTGTTAAGGAAATTTAGGATTAGTGCATGCATGAATCTAACCCAC
66 ATCTGTGATTTTATAATGCACTGTTAAGGAAATTTAGGATTAGTGCATGCATAAATCTAACCAAC
* *
7229765 CATTCAATCTATTTATAAATTAAAATTTA
131 CATCCAATCTATTTATAAAGTAAAATTTA
* * * *
7229794 TGACAAAGAAAAGGCCGACTAGTTGTTTATGAAAGCCATAAAAATTGAAAAGGTAAATATGAAAG
1 TGACAAAGAAAAAGCCAACCAGTTGTTCATGAAAGCCATAAAAATTGAAAAGGTAAATATGAAAG
** * *
7229859 ATCTGTGATTTTATGCTGCACTGTTAA-GAGATTTAGGATTAGTTCATGCATAAATCTAACCAAC
66 ATCTGTGATTTTATAATGCACTGTTAAGGAAATTTAGGATTAGTGCATGCATAAATCTAACCAAC
*
7229923 CATCCAATCTCTTTA
131 CATCCAATCTATTTA
7229938 AACTAGGTAA
Statistics
Matches: 127, Mismatches: 17, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
158 46 0.36
159 81 0.64
ACGTcount: A:0.39, C:0.14, G:0.17, T:0.30
Consensus pattern (159 bp):
TGACAAAGAAAAAGCCAACCAGTTGTTCATGAAAGCCATAAAAATTGAAAAGGTAAATATGAAAG
ATCTGTGATTTTATAATGCACTGTTAAGGAAATTTAGGATTAGTGCATGCATAAATCTAACCAAC
CATCCAATCTATTTATAAAGTAAAATTTA
Found at i:7230123 original size:15 final size:13
Alignment explanation
Indices: 7230077--7230111 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 13
7230067 TCGTTGGAAC
*
7230077 TTTGTTTTC-AGT
1 TTTGTTTTCAACT
7230089 TTTGTTTTCAACT
1 TTTGTTTTCAACT
7230102 TTTGTTTTCA
1 TTTGTTTTCA
7230112 TCCTCTTTGT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
12 9 0.43
13 12 0.57
ACGTcount: A:0.11, C:0.11, G:0.11, T:0.66
Consensus pattern (13 bp):
TTTGTTTTCAACT
Found at i:7233896 original size:15 final size:16
Alignment explanation
Indices: 7233876--7233905 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
7233866 TATAAAAAAA
7233876 TTTGAAGA-TTTTTTG
1 TTTGAAGAGTTTTTTG
7233891 TTTGAAGAGTTTTTT
1 TTTGAAGAGTTTTTT
7233906 ACTTTTTATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.20, C:0.00, G:0.20, T:0.60
Consensus pattern (16 bp):
TTTGAAGAGTTTTTTG
Found at i:7246252 original size:6 final size:5
Alignment explanation
Indices: 7246231--7246345 Score: 76
Period size: 5 Copynumber: 21.8 Consensus size: 5
7246221 TCCTTTTTCT
*
7246231 TTTTA TTTTA CGTTTTGA TTTTA TTTTA CTTTTA TTTTA -TCTA TTTTA
1 TTTTA TTTTA --TTTT-A TTTTA TTTTA -TTTTA TTTTA TTTTA TTTTA
* * *
7246279 TTTTCA TTTTA TTTTAGA TTTT- TTCTA TTTTA -CTTA CTATTA TTTTA
1 TTTT-A TTTTA TTTT--A TTTTA TTTTA TTTTA TTTTA -TTTTA TTTTA
7246326 TCTTTA -TTTA TTATTA TTTT
1 T-TTTA TTTTA TT-TTA TTTT
7246346 TCACTATTTT
Statistics
Matches: 89, Mismatches: 7, Indels: 28
0.72 0.06 0.23
Matches are distributed among these distances:
4 13 0.15
5 40 0.45
6 26 0.29
7 9 0.10
8 1 0.01
ACGTcount: A:0.20, C:0.07, G:0.03, T:0.70
Consensus pattern (5 bp):
TTTTA
Found at i:7246340 original size:21 final size:20
Alignment explanation
Indices: 7246250--7246345 Score: 81
Period size: 21 Copynumber: 4.7 Consensus size: 20
7246240 ACGTTTTGAT
7246250 TTTATT-TTACTTTTATTTTA
1 TTTATTATTA-TTTTATTTTA
*
7246270 TCTATT-TTATTTTCATTTTA
1 TTTATTATTATTTT-ATTTTA
* *
7246290 TTT-TAGATTTTTTCTATTTTA
1 TTTAT-TATTATTT-TATTTTA
* *
7246311 CTTACTATTATTTTATCTTTA
1 TTTATTATTATTTTAT-TTTA
7246332 TTTATTATTATTTT
1 TTTATTATTATTTT
7246346 TCACTATTTT
Statistics
Matches: 60, Mismatches: 10, Indels: 11
0.74 0.12 0.14
Matches are distributed among these distances:
19 5 0.08
20 19 0.32
21 35 0.58
22 1 0.02
ACGTcount: A:0.21, C:0.07, G:0.01, T:0.71
Consensus pattern (20 bp):
TTTATTATTATTTTATTTTA
Found at i:7250798 original size:19 final size:18
Alignment explanation
Indices: 7250776--7250819 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 18
7250766 CCTTCTTGTG
7250776 TTTTTGTTGTTGTTGATTTT
1 TTTTTGTTGTT-TT-ATTTT
7250796 TTTTTAGTTTGTTTTATTTT
1 TTTTT-G-TTGTTTTATTTT
7250816 TTTT
1 TTTT
7250820 GTTTGGGATT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
20 14 0.64
21 3 0.14
22 5 0.23
ACGTcount: A:0.07, C:0.00, G:0.14, T:0.80
Consensus pattern (18 bp):
TTTTTGTTGTTTTATTTT
Found at i:7250962 original size:36 final size:37
Alignment explanation
Indices: 7250898--7250969 Score: 92
Period size: 37 Copynumber: 2.0 Consensus size: 37
7250888 ATCGTAATCC
* * * *
7250898 AAAAAATAAGAAAACGATTAGAATAACACTGCAAGTT
1 AAAAAATAAAAAAACGATGAGAACAACACCGCAAGTT
*
7250935 AAAAAATAAAAAAATGATGAG-ACAACACCGCAAGT
1 AAAAAATAAAAAAACGATGAGAACAACACCGCAAGT
7250970 CAGATAAAGT
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
36 12 0.40
37 18 0.60
ACGTcount: A:0.58, C:0.12, G:0.14, T:0.15
Consensus pattern (37 bp):
AAAAAATAAAAAAACGATGAGAACAACACCGCAAGTT
Found at i:7251017 original size:22 final size:21
Alignment explanation
Indices: 7250987--7251029 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
7250977 AGTGACCACT
*
7250987 AATCTGGGTTTACGTGCTAGC
1 AATCTGGGTTTACATGCTAGC
*
7251008 AATCTTGGGTTTATATGCTAGC
1 AATC-TGGGTTTACATGCTAGC
7251030 TAAATTAGGT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 4 0.21
22 15 0.79
ACGTcount: A:0.21, C:0.16, G:0.26, T:0.37
Consensus pattern (21 bp):
AATCTGGGTTTACATGCTAGC
Found at i:7251331 original size:34 final size:33
Alignment explanation
Indices: 7251293--7251386 Score: 95
Period size: 34 Copynumber: 2.8 Consensus size: 33
7251283 AAGTTGGGCT
7251293 TTAAAATCTTTATCAAGTGTCAGGTAAACTAGGC
1 TTAAAATCTTTATCAAGTGTCAGGTAAACT-GGC
* * *
7251327 TTAAAATCTTTTTCAGGTG-CTAGGTAAACTGGG
1 TTAAAATCTTTATCAAGTGTC-AGGTAAACTGGC
* *
7251360 TTTAAA-CTTTCA-CTAGTGTCAGGTAAA
1 TTAAAATCTTT-ATCAAGTGTCAGGTAAA
7251387 TTGGGTTTAA
Statistics
Matches: 50, Mismatches: 7, Indels: 8
0.77 0.11 0.12
Matches are distributed among these distances:
32 15 0.30
33 9 0.18
34 26 0.52
ACGTcount: A:0.32, C:0.14, G:0.19, T:0.35
Consensus pattern (33 bp):
TTAAAATCTTTATCAAGTGTCAGGTAAACTGGC
Found at i:7251397 original size:66 final size:66
Alignment explanation
Indices: 7251308--7251463 Score: 183
Period size: 66 Copynumber: 2.4 Consensus size: 66
7251298 ATCTTTATCA
* * * **
7251308 AGTGTCAGGTAAACTAGGCTTAAAATCTTTT-TCAGGTGCTAGGTAAACTGGGTTTAAACTTTCA
1 AGTGTCAGGTAAACTGGGCTTAAAAT-TTTTATCAGATGCTAGGTAAACTAGACTTAAACTTTCA
*
7251372 CT
65 AT
* *
7251374 AGTGTCAGGTAAATTGGG-TTTAAATTTTTCATCAGATGCTAGGTAAACTAGACTTAAACTTTCA
1 AGTGTCAGGTAAACTGGGCTTAAAATTTTT-ATCAGATGCTAGGTAAACTAGACTTAAACTTTCA
7251438 AT
65 AT
*
7251440 GGTG-CTAGGTAAACTGGGCTTAAA
1 AGTGTC-AGGTAAACTGGGCTTAAA
7251464 CTTTCATTGG
Statistics
Matches: 75, Mismatches: 11, Indels: 7
0.81 0.12 0.08
Matches are distributed among these distances:
64 4 0.05
65 7 0.09
66 60 0.80
67 4 0.05
ACGTcount: A:0.31, C:0.13, G:0.22, T:0.34
Consensus pattern (66 bp):
AGTGTCAGGTAAACTGGGCTTAAAATTTTTATCAGATGCTAGGTAAACTAGACTTAAACTTTCAA
T
Found at i:7251463 original size:98 final size:97
Alignment explanation
Indices: 7251249--7251501 Score: 264
Period size: 98 Copynumber: 2.5 Consensus size: 97
7251239 TGATGTCAGA
* * * *
7251249 TAAACTGGGCTTAAAATTTCATTAGGTGACAGTGAAGTTGGGCTTTAAAATCTTTATCAAGTGTC
1 TAAACTGGGCTTAAACTTTCATTA-GTGTCAGT-AAATTGGG-TTT-AAATTTTTATCAAGTGTC
*
7251314 AGGTAAACTAGGCTTAAAATCTTTTTCAGGTGCTAGG
62 AGGTAAACTAGACTTAAAATC-TTTTCAGGTGCTAGG
* *
7251351 TAAACTGGGTTTAAACTTTCACTAGTGTCAGGTAAATTGGGTTTAAATTTTTCATC-AGATG-CT
1 TAAACTGGGCTTAAACTTTCATTAGTGTCA-GTAAATTGGGTTTAAATTTTT-ATCAAG-TGTC-
7251414 AGGTAAACTAGACTT-AAA-C-TTTCAATGGTGCTAGG
62 AGGTAAACTAGACTTAAAATCTTTTC-A-GGTGCTAGG
* * *
7251449 TAAACTGGGCTTAAACTTTCATTGGTGTCAAGTAAATTGTGCTTAAAATTTTT
1 TAAACTGGGCTTAAACTTTCATTAGTGTC-AGTAAATTG-GGTTTAAATTTTT
7251502 TTTTTGGTAC
Statistics
Matches: 131, Mismatches: 12, Indels: 19
0.81 0.07 0.12
Matches are distributed among these distances:
96 4 0.03
97 1 0.01
98 44 0.34
99 25 0.19
100 22 0.17
101 12 0.09
102 23 0.18
ACGTcount: A:0.30, C:0.13, G:0.21, T:0.36
Consensus pattern (97 bp):
TAAACTGGGCTTAAACTTTCATTAGTGTCAGTAAATTGGGTTTAAATTTTTATCAAGTGTCAGGT
AAACTAGACTTAAAATCTTTTCAGGTGCTAGG
Found at i:7251475 original size:32 final size:32
Alignment explanation
Indices: 7251342--7251864 Score: 233
Period size: 32 Copynumber: 15.8 Consensus size: 32
7251332 ATCTTTTTCA
* *
7251342 GGTGCTAGGTAAACTGGGTTTAAACTTTCACT
1 GGTGCTAGGTAAACTGGGCTTAAACTTTCATT
* * * * *
7251374 AGTG-TCAGGTAAATTGGGTTTAAATTTTTCATCA
1 GGTGCT-AGGTAAACTGGGCTTAAA-CTTTCAT-T
* * * *
7251408 GATGCTAGGTAAACTAGACTTAAACTTTCAAT
1 GGTGCTAGGTAAACTGGGCTTAAACTTTCATT
7251440 GGTGCTAGGTAAACTGGGCTTAAACTTTCATT
1 GGTGCTAGGTAAACTGGGCTTAAACTTTCATT
* * * * **
7251472 GGTG-TCAAGTAAATTGTGCTTAAAATTTTTTTTTT
1 GGTGCT-AGGTAAACTGGGCTT-AAA--CTTTCATT
* * ** * * *
7251507 GGTACCAAATAAATTAGGCTTAAAATTTCATT
1 GGTGCTAGGTAAACTGGGCTTAAACTTTCATT
* *
7251539 GGATGCTTAGGTAAATTGAGCTTAAACTTTCATT
1 GG-TGC-TAGGTAAACTGGGCTTAAACTTTCATT
* * * *
7251573 GGTGCCAGGTAAATTGAGCTTAAAATACTTT-TTT
1 GGTGCTAGGTAAACTGGGCTT--AA-ACTTTCATT
* * *
7251607 GGTGCTAGATCAACTGGGCTTAAAATTTCATT
1 GGTGCTAGGTAAACTGGGCTTAAACTTTCATT
* * ** ** *
7251639 GTGTGCCAGCTAAGTTAAGCTTAAAATCTTTCTTT
1 G-GTGCTAGGTAAACTGGGCTT-AAA-CTTTCATT
* * * * * **
7251674 GAGTGCCAAGTAAACTAGGTTTAGCATCTTTTTTT
1 G-GTGCTAGGTAAACTGGGCTTA--AACTTTCATT
* * * * *
7251709 GATGCTAGATAAACTGGACTTAAAATTTTATT
1 GGTGCTAGGTAAACTGGGCTTAAACTTTCATT
* ** * *
7251741 AGGTGCCAACTAAGCTAGGCTTAAACTTTCATT
1 -GGTGCTAGGTAAACTGGGCTTAAACTTTCATT
* * * *
7251774 GGTGCCAGGTAAAACTGTGCTTAAAATTTTCATCA
1 GGTGCTAGGT-AAACTGGGCTT-AAACTTTCAT-T
* *
7251809 GGTGCTAGGTAAACTGGACTTAAACTTTCACT
1 GGTGCTAGGTAAACTGGGCTTAAACTTTCATT
* * *
7251841 GGTGCCACGTAAACTGGGTTTAAA
1 GGTGCTAGGTAAACTGGGCTTAAA
7251865 ATCTTTTTTT
Statistics
Matches: 365, Mismatches: 102, Indels: 48
0.71 0.20 0.09
Matches are distributed among these distances:
31 6 0.02
32 126 0.35
33 70 0.19
34 98 0.27
35 64 0.18
36 1 0.00
ACGTcount: A:0.30, C:0.14, G:0.20, T:0.36
Consensus pattern (32 bp):
GGTGCTAGGTAAACTGGGCTTAAACTTTCATT
Found at i:7251567 original size:101 final size:98
Alignment explanation
Indices: 7251417--7251800 Score: 281
Period size: 102 Copynumber: 3.8 Consensus size: 98
7251407 AGATGCTAGG
* * * * *
7251417 TAAACTAGACTTAAACTTTCAATGGTGCTAGGTAAACTGGGCTTAAACTTTCATTGGTGTCAAGT
1 TAAACTAGGCTTAAAATTTCATTGGTGCTAGGTAAACTGAGCTTAAACTTTCATTGGTGCCAAGT
* **
7251482 AAATTGTGCTTAAAATTTTTTTTTTGGTACCAAA
66 AAATTGAGCTTAAAA-TACTTTTTTGGTACCAAA
* * *
7251516 TAAATTAGGCTTAAAATTTCATTGGATGCTTAGGTAAATTGAGCTTAAACTTTCATTGGTGCCAG
1 TAAACTAGGCTTAAAATTTCATTGG-TGC-TAGGTAAACTGAGCTTAAACTTTCATTGGTGCCAA
* * *
7251581 GTAAATTGAGCTTAAAATACTTTTTTGGTGCTAGA
64 GTAAATTGAGCTTAAAATACTTTTTTGGTACCAAA
* * * * ** * *
7251616 TCAACTGGGCTTAAAATTTCATTGTGTGCCAGCTAAGTTAAGCTTAAAATCTTTCTTTGAGTGCC
1 TAAACTAGGCTTAAAATTTCATTG-GTGCTAGGTAAACTGAGCTT-AAA-CTTTCATTG-GTGCC
* * ** * * * *
7251681 AAGTAAACT-AGGTTTAGCAT-CTTTTTTTGATGCTAGA
62 AAGTAAATTGA-GCTTAAAATAC-TTTTTTGGTACCAAA
* * ** *
7251718 TAAACT-GGACTTAAAATTTTATTAGGTGCCAACTAAGCT-AGGCTTAAACTTTCATTGGTGCCA
1 TAAACTAGG-CTTAAAATTTCATT-GGTGCTAGGTAAACTGA-GCTTAAACTTTCATTGGTGCCA
* * *
7251781 GGTAAAACTGTGCTTAAAAT
63 AGT-AAATTGAGCTTAAAAT
7251801 TTTCATCAGG
Statistics
Matches: 234, Mismatches: 38, Indels: 25
0.79 0.13 0.08
Matches are distributed among these distances:
99 41 0.18
100 62 0.26
101 64 0.27
102 66 0.28
103 1 0.00
ACGTcount: A:0.31, C:0.14, G:0.18, T:0.37
Consensus pattern (98 bp):
TAAACTAGGCTTAAAATTTCATTGGTGCTAGGTAAACTGAGCTTAAACTTTCATTGGTGCCAAGT
AAATTGAGCTTAAAATACTTTTTTGGTACCAAA
Found at i:7251595 original size:66 final size:64
Alignment explanation
Indices: 7251342--7251853 Score: 246
Period size: 67 Copynumber: 7.7 Consensus size: 64
7251332 ATCTTTTTCA
* * * * * * * *
7251342 GGTGCTAGGTAAACTGGGTTTAAACTTTCACTAGTGTCAGGTAAATTGGGTTTAAATTTTTCATC
1 GGTGCTAGGTAAACTGAGCTTAAACTTTCATTGGTGCCAGGTAAATTGAGCTTAAA-ATTTCAT-
*
7251407 A
64 T
* * * * * *
7251408 GATGCTAGGTAAACT-AGACTTAAACTTTCAATGGTGCTAGGTAAACTGGGCTTAAACTTTCATT
1 GGTGCTAGGTAAACTGAG-CTTAAACTTTCATTGGTGCCAGGTAAATTGAGCTTAAAATTTCATT
* * * * ** * **
7251472 GGTG-TCAAGTAAATTGTGCTTAAAATTTTTTTTTTGGTACCAAATAAATT-AGGCTTAAAATTT
1 GGTGCT-AGGTAAACTGAGCTT-AAA--CTTTCATTGGTGCCAGGTAAATTGA-GCTTAAAATTT
7251535 CATT
61 CATT
* *
7251539 GGATGCTTAGGTAAATTGAGCTTAAACTTTCATTGGTGCCAGGTAAATTGAGCTTAAAATACTTT
1 GG-TGC-TAGGTAAACTGAGCTTAAACTTTCATTGGTGCCAGGTAAATTGAGCTTAAAAT--TTC
*
7251604 TTT
62 ATT
* * * * * * * *
7251607 GGTGCTAGATCAACTGGGCTTAAAATTTCATTGTGTGCCAGCTAAGTTAAGCTTAAAATCTTTCT
1 GGTGCTAGGTAAACTGAGCTTAAACTTTCATTG-GTGCCAGGTAAATTGAGCTTAAAA--TTTCA
7251672 TT
63 TT
* * * * ** * * * *
7251674 GAGTGCCAAGTAAACT-AGGTTTAGCATCTTTTTTTGATGCTAGATAAACTG-GACTTAAAATTT
1 G-GTGCTAGGTAAACTGA-GCTTA--AACTTTCATTGGTGCCAGGTAAATTGAG-CTTAAAATTT
*
7251737 TATT
61 CATT
* ** * * *
7251741 AGGTGCCAACTAAGCT-AGGCTTAAACTTTCATTGGTGCCAGGTAAAACTGTGCTTAAAATTTTC
1 -GGTGCTAGGTAAACTGA-GCTTAAACTTTCATTGGTGCCAGGT-AAATTGAGCTTAAAA-TTTC
*
7251805 ATCA
62 AT-T
* *
7251809 GGTGCTAGGTAAACTG-GACTTAAACTTTCACTGGTGCCACGTAAA
1 GGTGCTAGGTAAACTGAG-CTTAAACTTTCATTGGTGCCAGGTAAA
7251854 CTGGGTTTAA
Statistics
Matches: 338, Mismatches: 80, Indels: 56
0.71 0.17 0.12
Matches are distributed among these distances:
63 1 0.00
64 13 0.04
65 25 0.07
66 111 0.33
67 123 0.36
68 27 0.08
69 30 0.09
70 8 0.02
ACGTcount: A:0.30, C:0.14, G:0.20, T:0.36
Consensus pattern (64 bp):
GGTGCTAGGTAAACTGAGCTTAAACTTTCATTGGTGCCAGGTAAATTGAGCTTAAAATTTCATT
Found at i:7252131 original size:22 final size:22
Alignment explanation
Indices: 7252105--7252168 Score: 65
Period size: 22 Copynumber: 2.9 Consensus size: 22
7252095 AGCTAATCTG
7252105 AGCTTATGTGCTAACTAATCCA
1 AGCTTATGTGCTAACTAATCCA
* * * * *
7252127 GGCTTATGTACCAACTAAACTA
1 AGCTTATGTGCTAACTAATCCA
* *
7252149 AGCTCATGTGCTAGCTAATC
1 AGCTTATGTGCTAACTAATC
7252169 TGGGCTTAAA
Statistics
Matches: 31, Mismatches: 11, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.31, C:0.23, G:0.16, T:0.30
Consensus pattern (22 bp):
AGCTTATGTGCTAACTAATCCA
Found at i:7252232 original size:32 final size:31
Alignment explanation
Indices: 7252165--7252239 Score: 80
Period size: 32 Copynumber: 2.4 Consensus size: 31
7252155 TGTGCTAGCT
* *
7252165 AATCTGGGCTTAAATCTCATTGATGCCAGAT
1 AATCTGGGCTTAAATCTCATTGATGCCAAAA
* *
7252196 AATCTGGGCTTAAGA-CATCATTGGTGTCAAAA
1 AATCTGGGCTTAA-ATC-TCATTGATGCCAAAA
*
7252228 AATCTGAGCTTA
1 AATCTGGGCTTA
7252240 CGTGCTAGCT
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
31 14 0.38
32 23 0.62
ACGTcount: A:0.32, C:0.17, G:0.20, T:0.31
Consensus pattern (31 bp):
AATCTGGGCTTAAATCTCATTGATGCCAAAA
Found at i:7252378 original size:32 final size:32
Alignment explanation
Indices: 7252322--7252383 Score: 90
Period size: 32 Copynumber: 1.9 Consensus size: 32
7252312 TTTAAATCTA
7252322 ATTGATGCCAGATAATTTAGGCTTAAGACTAC
1 ATTGATGCCAGATAATTTAGGCTTAAGACTAC
* *
7252354 ATTGGTGCTAGATAATTT-GAGCTTAAGACT
1 ATTGATGCCAGATAATTTAG-GCTTAAGACT
7252384 TGGGTGCCAG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
31 1 0.04
32 26 0.96
ACGTcount: A:0.32, C:0.13, G:0.21, T:0.34
Consensus pattern (32 bp):
ATTGATGCCAGATAATTTAGGCTTAAGACTAC
Found at i:7254560 original size:29 final size:27
Alignment explanation
Indices: 7254504--7254561 Score: 73
Period size: 29 Copynumber: 2.1 Consensus size: 27
7254494 TTTTTCATGA
*
7254504 TTTTTTTGCCTTTTGTTTTTTTTCACT
1 TTTTTTTGCCTTTTGTTTTTTTTAACT
7254531 TTTTTTATAGCCTTTT-TTTTTTTATAACT
1 TTTTTT-T-GCCTTTTGTTTTTTT-TAACT
7254560 TT
1 TT
7254562 AGAACCTAAC
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
27 6 0.22
28 8 0.30
29 13 0.48
ACGTcount: A:0.10, C:0.12, G:0.05, T:0.72
Consensus pattern (27 bp):
TTTTTTTGCCTTTTGTTTTTTTTAACT
Found at i:7255152 original size:18 final size:18
Alignment explanation
Indices: 7255129--7255166 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
7255119 GTAAATGGCT
7255129 TAGGTTAATCCTTTATTC
1 TAGGTTAATCCTTTATTC
*
7255147 TAGGTTGATCCTTTATTC
1 TAGGTTAATCCTTTATTC
7255165 TA
1 TA
7255167 TAAATGTTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.21, C:0.16, G:0.13, T:0.50
Consensus pattern (18 bp):
TAGGTTAATCCTTTATTC
Found at i:7258960 original size:161 final size:160
Alignment explanation
Indices: 7258773--7260038 Score: 1217
Period size: 161 Copynumber: 7.9 Consensus size: 160
7258763 ATTTAATATC
* * ** * *
7258773 ATCCAAACTATTAAAATAGAACAATAATAATAAATTTACATTTTTACCTTTTAATGACACAAAAA
1 ATCCAAACTGTTAAAATAGCACAATAATAGCAAATTTGCATTTTTGCCTTTTAA-GACACAAAAA
* ** * * *
7258838 ATCTTAAACAGAGGTAAACAATAACTTTTTCACATATATCAACTGTGGAAACCAAGTTTAGTCAT
65 GTCTTAAACAGACATAAACAATAACTTTTTCACACATATCAACTGTGGAAACCAAGTTCAATCAT
* * *
7258903 TCGGACAAATTTAATATCGTATATTGAAGCT
130 TCGGACAAGTTTAATATCATGTATTGAAGCT
* * * *
7258934 ATCCAAAATGTTAAAATAGCACAATAACAGCAATTTTGCATCTTTGCCTTTTAACGACACAAAAA
1 ATCCAAACTGTTAAAATAGCACAATAATAGCAAATTTGCATTTTTGCCTTTTAA-GACACAAAAA
* * * * * *
7258999 GTCTTAAACAAACACAAACGATAACTTTTTCACACATTTCAACTATGGAAACTAAGTTCAATCAT
65 GTCTTAAACAGACATAAACAATAACTTTTTCACACATATCAACTGTGGAAACCAAGTTCAATCAT
* * *
7259064 TCGGACAAGTTTAACATCATGTATTGAAACC
130 TCGGACAAGTTTAATATCATGTATTGAAGCT
* * * * * *
7259095 ATCTAAATTGTGAAAACAGAACAATAATAGCAAATTTGCATTTTTACCTTTTAAGACACAAAAAA
1 ATCCAAACTGTTAAAATAGCACAATAATAGCAAATTTGCATTTTTGCCTTTTAAGACAC-AAAAA
* * * *
7259160 ATCTTAAAACAGAGATAAACAATAACTTTTTCACACATATCAACTGTGGAAATCAAGTGCAATCA
65 GTCTT-AAACAGACATAAACAATAACTTTTTCACACATATCAACTGTGGAAACCAAGTTCAATCA
** * *
7259225 TTTAGTCAAATTTAATATCATGTATTGAAGCT
129 TTCGGACAAGTTTAATATCATGTATTGAAGCT
** * * * ** * * *
7259257 ATTTAAACTGTTAAAATAACATAATAACAATAATTTTGCATTTTTGCCTTCTAATGGCACAAAAA
1 ATCCAAACTGTTAAAATAGCACAATAATAGCAAATTTGCATTTTTGCCTTTTAA-GACACAAAAA
** ** * * *
7259322 GTCTTAAACAGATGTAAATGATAACTTTTTCATAAATATCAACTGTGGAAATCAAGTTCAATCAT
65 GTCTTAAACAGACATAAACAATAACTTTTTCACACATATCAACTGTGGAAACCAAGTTCAATCAT
* * * * *
7259387 TTGGATATGTTTAATATCATGTCTTGAAACT
130 TCGGACAAGTTTAATATCATGTATTGAAGCT
* ** * * * * * *
7259418 ATCAAAACTGTTAAAATAAAATAAAAATAGCAATTTTGCATTTTTGCGTTTTAACAGCATAAAAA
1 ATCCAAACTGTTAAAATAGCACAATAATAGCAAATTTGCATTTTTGCCTTTTAAGA-CACAAAAA
* *
7259483 GTCTTAAACAGACATAAAC---AACTTTTTCACACATATCAA-TCGTGAAAACTAAGTTCAATCA
65 GTCTTAAACAGACATAAACAATAACTTTTTCACACATATCAACT-GTGGAAACCAAGTTCAATCA
* *
7259544 TTTGGACAAG----ATATCATGTATTAAAGCT
129 TTCGGACAAGTTTAATATCATGTATTGAAGCT
* * * *
7259572 ATCCAAACTGTTAAAATAGCAAAATAATAGCAAATTTGCATTTTTGCCTTTTAACAGTATAAAAA
1 ATCCAAACTGTTAAAATAGCACAATAATAGCAAATTTGCATTTTTGCCTTTTAAGA-CACAAAAA
* * * * * * *
7259637 GTCTTAAACAAACGTAAACGAT-ATTTTGTTCATA-ATATCAATTGTGG-AACCAAGCTCAATCA
65 GTCTTAAACAGACATAAACAATAACTTT-TTCACACATATCAACTGTGGAAACCAAGTTCAATCA
* *
7259699 TTCGGACAAGTTTACTATCATGTATTGAAGCC
129 TTCGGACAAGTTTAATATCATGTATTGAAGCT
* * * * * * * *
7259731 ATCCAAACTGATAAAACAGAACAATAACAGTAAATTTGCATTTTTTCCTTTTAATAACATAAAAA
1 ATCCAAACTGTTAAAATAGCACAATAATAGCAAATTTGCATTTTTGCCTTTTAA-GACA-CAAAA
* * ** * * *
7259796 ATTCTTAAATAG-GGTAAACAATAACTTTTTCACACATATCAATTAT-AAAACCAAGTTCAATCA
64 AGTCTTAAACAGACATAAACAATAACTTTTTCACACATATCAACTGTGGAAACCAAGTTCAATCA
*
7259859 TTCGGACAAGTTTAATATAATGTATTGAAGCT
129 TTCGGACAAGTTTAATATCATGTATTGAAGCT
* * * * * * * *
7259891 ATACAAATTGTTAAAATATCTCAATAATAGCAATTTTGCATTTTTACCTTTTAACGGCATAAAAA
1 ATCCAAACTGTTAAAATAGCACAATAATAGCAAATTTGCATTTTTGCCTTTTAA-GACACAAAAA
* ** ** ** * *
7259956 GTCTTAAACAGACATACATTATAACTTTTTCACATGTATCAACAATGAAAACTAAGTTCAATCAT
65 GTCTTAAACAGACATAAACAATAACTTTTTCACACATATCAACTGTGGAAACCAAGTTCAATCAT
*
7260021 TCGGATAAGTTTAATATC
130 TCGGACAAGTTTAATATC
7260039 TTAAACTTAC
Statistics
Matches: 904, Mismatches: 180, Indels: 42
0.80 0.16 0.04
Matches are distributed among these distances:
154 89 0.10
155 22 0.02
156 14 0.02
157 7 0.01
158 43 0.05
159 90 0.10
160 146 0.16
161 364 0.40
162 125 0.14
163 4 0.00
ACGTcount: A:0.42, C:0.16, G:0.10, T:0.32
Consensus pattern (160 bp):
ATCCAAACTGTTAAAATAGCACAATAATAGCAAATTTGCATTTTTGCCTTTTAAGACACAAAAAG
TCTTAAACAGACATAAACAATAACTTTTTCACACATATCAACTGTGGAAACCAAGTTCAATCATT
CGGACAAGTTTAATATCATGTATTGAAGCT
Found at i:7259381 original size:323 final size:321
Alignment explanation
Indices: 7258784--7260034 Score: 1347
Period size: 323 Copynumber: 3.9 Consensus size: 321
7258774 TCCAAACTAT
* ** *
7258784 TAAAATAGAACAATAATAATAAATTTACATTTTTACCTTTTAATGACAC--AAAAAATCTTAAAC
1 TAAAACAGAACAATAATAGCAAATTTGCATTTTTACCTTTTAA-GACACATAAAAAATCTTAAAC
* * * *
7258847 AGAGGTAAACAATAACTTTTTCACATATATCAACTGTGGAAACCAAGTTTAGTCATTCGGACAAA
65 AGAGATAAACAATAACTTTTTCACACATATCAACTGT-GAAACCAAGTTCAATCATTCGGACAAA
* * * * *
7258912 TTTAATATCGTATATTGAAGCTATCCAAAATGTTAAAATAGCACAATAACAGCAATTTTGCATCT
129 TTTAATATCATGTATTGAAGCTATCCAAACTGTTAAAATAGCATAATAACAGCAATTTTGCATTT
* * * *
7258977 TTGCCTTTTAACGACACAAAAAGTCTTAAACAAACACAAACGATAACTTTTTCACACATTTCAAC
194 TTGCCTTTTAACGGCACAAAAAGTCTTAAACAAACATAAACGATAACTTTTTCACAAATATCAAC
* *
7259042 TATGGAAACTAAGTTCAATCATTCGGACAAGTTTAACATCATGTATTGAAACCATCTAAATTG
259 TATGGAAACTAAGTTCAATCATTCGGACAAGTTTAACATCATGTATTGAAACCATCAAAACTG
7259105 TGAAAACAGAACAATAATAGCAAATTTGCATTTTTACCTTTTAAGACACA-AAAAAATCTTAAAA
1 T-AAAACAGAACAATAATAGCAAATTTGCATTTTTACCTTTTAAGACACATAAAAAATCTT-AAA
* * ** *
7259169 CAGAGATAAACAATAACTTTTTCACACATATCAACTGTGGAAATCAAGTGCAATCATTTAGTCAA
64 CAGAGATAAACAATAACTTTTTCACACATATCAACTGT-GAAACCAAGTTCAATCATTCGGACAA
** * **
7259234 ATTTAATATCATGTATTGAAGCTATTTAAACTGTTAAAATAACATAATAACAATAATTTTGCATT
128 ATTTAATATCATGTATTGAAGCTATCCAAACTGTTAAAATAGCATAATAACAGCAATTTTGCATT
* * * ** * *
7259299 TTTGCCTTCTAATGGCACAAAAAGTCTTAAACAGATGTAAATGATAACTTTTTCATAAATATCAA
193 TTTGCCTTTTAACGGCACAAAAAGTCTTAAACAAACATAAACGATAACTTTTTCACAAATATCAA
* * * * * * *
7259364 CTGTGGAAA-TCAAGTTCAATCATTTGGATATGTTTAATATCATGTCTTGAAACTATCAAAACTG
258 CTATGGAAACT-AAGTTCAATCATTCGGACAAGTTTAACATCATGTATTGAAACCATCAAAACTG
* * * * * * * *
7259428 TTAAAATAAAATAAAAATAGCAATTTTGCATTTTTGCGTTTT-A-ACAGCATAAAAAGTCTTAAA
1 -TAAAACAGAACAATAATAGCAAATTTGCATTTTTACCTTTTAAGACA-CATAAAAAATCTTAAA
* * *
7259491 CAGACATAAAC---AACTTTTTCACACATATCAA-TCGTGAAAACTAAGTTCAATCATTTGGAC-
64 CAGAGATAAACAATAACTTTTTCACACATATCAACT-GTG-AAACCAAGTTCAATCATTCGGACA
* * * * *
7259551 AA---GATATCATGTATTAAAGCTATCCAAACTGTTAAAATAGCAAAATAATAGCAAATTTGCAT
127 AATTTAATATCATGTATTGAAGCTATCCAAACTGTTAAAATAGCATAATAACAGCAATTTTGCAT
* * * * * *
7259613 TTTTGCCTTTTAACAGTATAAAAAGTCTTAAACAAACGTAAACGAT-ATTTTGTTCA-TAATATC
192 TTTTGCCTTTTAACGGCACAAAAAGTCTTAAACAAACATAAACGATAACTTT-TTCACAAATATC
* * * * * *
7259676 AATTGTGG-AACCAAGCTCAATCATTCGGACAAGTTT-ACTATCATGTATTGAAGCCATCCAAAC
256 AACTATGGAAACTAAGTTCAATCATTCGGACAAGTTTAAC-ATCATGTATTGAAACCATCAAAAC
7259739 TG
320 TG
* * * *
7259741 ATAAAACAGAACAATAACAGTAAATTTGCATTTTTTCCTTTTAATA-ACATAAAAAATTCTTAAA
1 -TAAAACAGAACAATAATAGCAAATTTGCATTTTTACCTTTTAAGACACATAAAAAA-TCTTAAA
* * * * * *
7259805 TAG-GGTAAACAATAACTTTTTCACACATATCAATTATAAAACCAAGTTCAATCATTCGGACAAG
64 CAGAGATAAACAATAACTTTTTCACACATATCAACTGTGAAACCAAGTTCAATCATTCGGACAAA
* * * * *
7259869 TTTAATATAATGTATTGAAGCTATACAAATTGTTAAAATATC-TCAATAATAGCAATTTTGCATT
129 TTTAATATCATGTATTGAAGCTATCCAAACTGTTAAAATAGCAT-AATAACAGCAATTTTGCATT
* * * * ** **
7259933 TTTACCTTTTAACGGCATAAAAAGTCTTAAACAGACATACATTATAACTTTTTCACATGTATCAA
193 TTTGCCTTTTAACGGCACAAAAAGTCTTAAACAAACATAAACGATAACTTTTTCACAAATATCAA
* * *
7259998 CAATGAAAACTAAGTTCAATCATTCGGATAAGTTTAA
258 CTATGGAAACTAAGTTCAATCATTCGGACAAGTTTAA
7260035 TATCTTAAAC
Statistics
Matches: 768, Mismatches: 134, Indels: 55
0.80 0.14 0.06
Matches are distributed among these distances:
312 1 0.00
313 89 0.12
314 28 0.04
315 114 0.15
316 22 0.03
317 1 0.00
318 4 0.01
319 133 0.17
320 12 0.02
321 34 0.04
322 66 0.09
323 263 0.34
324 1 0.00
ACGTcount: A:0.42, C:0.16, G:0.10, T:0.32
Consensus pattern (321 bp):
TAAAACAGAACAATAATAGCAAATTTGCATTTTTACCTTTTAAGACACATAAAAAATCTTAAACA
GAGATAAACAATAACTTTTTCACACATATCAACTGTGAAACCAAGTTCAATCATTCGGACAAATT
TAATATCATGTATTGAAGCTATCCAAACTGTTAAAATAGCATAATAACAGCAATTTTGCATTTTT
GCCTTTTAACGGCACAAAAAGTCTTAAACAAACATAAACGATAACTTTTTCACAAATATCAACTA
TGGAAACTAAGTTCAATCATTCGGACAAGTTTAACATCATGTATTGAAACCATCAAAACTG
Found at i:7263386 original size:21 final size:21
Alignment explanation
Indices: 7263362--7263407 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
7263352 CTTTATCACT
*
7263362 TTGAACATCAAGATCTCTAAC
1 TTGAACATCAAGATCACTAAC
** *
7263383 TTGAGTATCAATATCACTAAC
1 TTGAACATCAAGATCACTAAC
7263404 TTGA
1 TTGA
7263408 GTAATAGGAG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.37, C:0.20, G:0.11, T:0.33
Consensus pattern (21 bp):
TTGAACATCAAGATCACTAAC
Found at i:7263408 original size:21 final size:21
Alignment explanation
Indices: 7263368--7263410 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
7263358 CACTTTGAAC
*
7263368 ATCAAGATCTCTAACTTGAGT
1 ATCAAGATCACTAACTTGAGT
*
7263389 ATCAATATCACTAACTTGAGT
1 ATCAAGATCACTAACTTGAGT
7263410 A
1 A
7263411 ATAGGAGGCC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.37, C:0.19, G:0.12, T:0.33
Consensus pattern (21 bp):
ATCAAGATCACTAACTTGAGT
Found at i:7271013 original size:144 final size:141
Alignment explanation
Indices: 7270541--7271030 Score: 507
Period size: 144 Copynumber: 3.4 Consensus size: 141
7270531 TCATTTTTGA
* * *
7270541 GATTTTAAATGCACAAAAAATCATAAAATATTATAAAATTCAGATCTAAAAAGTTTTGTGAAAAT
1 GATTTCAAATGCACAAAAAATCATAAAATATTATAAAATTGAGATCT-AAAAGTTTTATGAAAAT
* * **
7270606 TCGAGTTCAAGAAGACCAAATTACAAAAATACCCTTAAAGGGTATTTTGGTAATTTCACACATTT
65 TCGAGTTTAAGAAGGCCAAATTATGAAAATACCCTTAAAGGGTATTTTGGTAATTT--CACATTT
* *
7270671 TGGAGTACTGTTGT
128 TGGAGTACTGCTAT
* * * *
7270685 GATTTCAAATGCATC-AAAAATCATGAAGTATTATGAAATTGAGATCTGAAAAGTTTCATGAAAA
1 GATTTCAAATGCA-CAAAAAATCATAAAATATTATAAAATTGAGATCT-AAAAGTTTTATGAAAA
* * * ** *
7270749 TTCGA-TCTCAGGAAGGTCAAATTATGAAAATACTTTTGTAAAAGGTATTTTGGTAATTTCACAC
64 TTCGAGT-TTAAGAAGGCCAAATTATGAAAATAC-CCT-TAAAGGGTATTTTGGTAATTTCACA-
*
7270813 TTATTGGAGTATTGCTAT
125 TT-TTGGAGTACTGCTAT
* * * * *
7270831 GATTTCAAATGCACAAAAAATTATGAAATATTATAAAATTGAGATCTAAAATTTTTTTTAAAAAT
1 GATTTCAAATGCACAAAAAATCATAAAATATTATAAAATTGAGATCTAAAA-GTTTTATGAAAAT
* * * * ** *
7270896 CCAAGTTTGAGAAGGCCAAATTATGAAAATACCCTTAAAGGGCATTTAAGTAATTTCATATTTCT
65 TCGAGTTTAAGAAGGCCAAATTATGAAAATACCCTTAAAGGGTATTTTGGTAATTTCACATTT-T
**
7270961 CAAAGTACTGCTAT
129 -GGAGTACTGCTAT
* * *
7270975 AATTTCAAATGCACCAAAAATCATAAAATATTAAAAAATTGAGATCTAAAAAGTTT
1 GATTTCAAATGCACAAAAAATCATAAAATATTATAAAATTGAGATCT-AAAAGTTT
7271031 CACAAAATTT
Statistics
Matches: 286, Mismatches: 48, Indels: 24
0.80 0.13 0.07
Matches are distributed among these distances:
142 1 0.00
143 4 0.01
144 159 0.56
145 14 0.05
146 107 0.37
147 1 0.00
ACGTcount: A:0.42, C:0.11, G:0.13, T:0.33
Consensus pattern (141 bp):
GATTTCAAATGCACAAAAAATCATAAAATATTATAAAATTGAGATCTAAAAGTTTTATGAAAATT
CGAGTTTAAGAAGGCCAAATTATGAAAATACCCTTAAAGGGTATTTTGGTAATTTCACATTTTGG
AGTACTGCTAT
Found at i:7271061 original size:144 final size:142
Alignment explanation
Indices: 7270541--7271098 Score: 460
Period size: 144 Copynumber: 3.9 Consensus size: 142
7270531 TCATTTTTGA
* * **
7270541 GATTTTAAATGCACAAAAAATCATAAAATATTATAAAATTCAGATCTAAAAAGTTTTGTGAAAAT
1 GATTTCAAATGCACAAAAAATCATAAAATATTATAAAATTGAGATCTAAAAAG-TTTCAGAAAAT
* * * * *
7270606 TCG-AGTTCAAGAAGACCAAATTACAAAAATACCCT-TAAAGGGTATTTTGGTAATTTCACACAT
65 TCGAACTTCAAAAAG-CCAAATTACGAAAATACCCTCTAAAGGGCATTTTAGTAATTT--CACAT
* *
7270669 TTTGGAGTACTGTTGT
127 TTTGGAGTACTGCTAT
* * * *
7270685 GATTTCAAATGCATC-AAAAATCATGAAGTATTATGAAATTGAGATCTGAAAAGTTTCATGAAAA
1 GATTTCAAATGCA-CAAAAAATCATAAAATATTATAAAATTGAGATCTAAAAAGTTTCA-GAAAA
* * * * * ** * * * *
7270749 TTCGATC-TCAGGAAGGTCAAATTATGAAAATACTTTTGTAAAAGGTATTTTGGTAATTTCACAC
64 TTCGAACTTCA-AAAAGCCAAATTACGAAAATAC-CCTCTAAAGGGCATTTTAGTAATTTCACA-
*
7270813 TTATTGGAGTATTGCTAT
126 TT-TTGGAGTACTGCTAT
* * ** *** *
7270831 GATTTCAAATGCACAAAAAATTATGAAATATTATAAAATTGAGATCTAAAATTTTTTTTAAAAAT
1 GATTTCAAATGCACAAAAAATCATAAAATATTATAAAATTGAGATCTAAAAAGTTTCAGAAAATT
* * * * * * * *
7270896 CCAAGTTTGAGAAGGCCAAATTATGAAAATACCCT-TAAAGGGCATTTAAGTAATTTCATATTTC
66 CGAA-CTTCAAAAAGCCAAATTACGAAAATACCCTCTAAAGGGCATTTTAGTAATTTCACATTT-
**
7270960 TCAAAGTACTGCTAT
129 T-GGAGTACTGCTAT
* * * *
7270975 AATTTCAAATGCACCAAAAATCATAAAATATTAAAAAATTGAGATCTAAAAAGTTTCACAAAATT
1 GATTTCAAATGCACAAAAAATCATAAAATATTATAAAATTGAGATCTAAAAAGTTTCAGAAAA-T
* * * * * *
7271040 TTGAACTTGAAAAAGTCAAATTACGAAAATACCTTCTCAAGGGCATTTTAGTTATTTCA
65 TCGAACTTCAAAAAGCCAAATTACGAAAATACCCTCTAAAGGGCATTTTAGTAATTTCA
7271099 TACTTTTCCA
Statistics
Matches: 330, Mismatches: 69, Indels: 29
0.77 0.16 0.07
Matches are distributed among these distances:
142 1 0.00
143 6 0.02
144 182 0.55
145 38 0.12
146 101 0.31
147 2 0.01
ACGTcount: A:0.42, C:0.12, G:0.13, T:0.33
Consensus pattern (142 bp):
GATTTCAAATGCACAAAAAATCATAAAATATTATAAAATTGAGATCTAAAAAGTTTCAGAAAATT
CGAACTTCAAAAAGCCAAATTACGAAAATACCCTCTAAAGGGCATTTTAGTAATTTCACATTTTG
GAGTACTGCTAT
Found at i:7271070 original size:290 final size:289
Alignment explanation
Indices: 7270541--7271071 Score: 663
Period size: 290 Copynumber: 1.8 Consensus size: 289
7270531 TCATTTTTGA
* *
7270541 GATTTTAAATGCACAAAAAATCATAAAATATTATAAAATTCAGATCTAAAAAGTTTTGTGAAAAT
1 GATTTCAAATGCACAAAAAATCATAAAATATTATAAAATTCAGATCTAAAAAGTTTTGTAAAAAT
* * * **
7270606 TCGAGTTCAAGAAGACCAAATTACAAAAATACCCTTAAAGGGTATTTTGGTAATTTCACACATTT
66 CCAAGTTCAAGAAGACCAAATTACAAAAATACCCTTAAAGGGCATTTAAGTAATTT-ACACATTT
** * * * * * * ** *
7270671 TGGAGTACTGTTGTGATTTCAAATGCATCAAAAATCATGAAGTATTATGAAATTGAGATCTGAAA
130 TAAAGTACTGCTATAATTTCAAATGCACCAAAAATCATAAAATATTAAAAAATTGAGATCTAAAA
* * * * *
7270736 AGTTTCATGAAAATTCGATCTCAGGAAGGTCAAATTATGAAAATACTTTTGTAAAAGGTATTTTG
195 AGTTTCATCAAAATTCGAACTCAGAAAAGTCAAATTACGAAAATACTTTTGTAAAAGGTATTTTG
7270801 GTAATTTCACACTTATTGGAGTATTGCTAT
260 GTAATTTCACACTTATTGGAGTATTGCTAT
* * * ** *
7270831 GATTTCAAATGCACAAAAAATTATGAAATATTATAAAATTGAGATCTAAAATTTTTTTTAAAAAT
1 GATTTCAAATGCACAAAAAATCATAAAATATTATAAAATTCAGATCTAAAAAGTTTTGTAAAAAT
** * ** *
7270896 CCAAGTTTGAGAAGGCCAAATTATGAAAATACCCTTAAAGGGCATTTAAGTAATTT-CATATTTC
66 CCAAGTTCAAGAAGACCAAATTACAAAAATACCCTTAAAGGGCATTTAAGTAATTTACACATTT-
7270960 TCAAAGTACTGCTATAATTTCAAATGCACCAAAAATCATAAAATATTAAAAAATTGAGATCTAAA
130 T-AAAGTACTGCTATAATTTCAAATGCACCAAAAATCATAAAATATTAAAAAATTGAGATCTAAA
* *
7271025 AAGTTTCA-CAAAATTTTGAACT-TGAAAAAGTCAAATTACGAAAATAC
194 AAGTTTCATCAAAA-TTCGAACTCAG-AAAAGTCAAATTACGAAAATAC
7271072 CTTCTCAAGG
Statistics
Matches: 200, Mismatches: 37, Indels: 8
0.82 0.15 0.03
Matches are distributed among these distances:
288 6 0.03
289 6 0.03
290 188 0.94
ACGTcount: A:0.43, C:0.11, G:0.13, T:0.33
Consensus pattern (289 bp):
GATTTCAAATGCACAAAAAATCATAAAATATTATAAAATTCAGATCTAAAAAGTTTTGTAAAAAT
CCAAGTTCAAGAAGACCAAATTACAAAAATACCCTTAAAGGGCATTTAAGTAATTTACACATTTT
AAAGTACTGCTATAATTTCAAATGCACCAAAAATCATAAAATATTAAAAAATTGAGATCTAAAAA
GTTTCATCAAAATTCGAACTCAGAAAAGTCAAATTACGAAAATACTTTTGTAAAAGGTATTTTGG
TAATTTCACACTTATTGGAGTATTGCTAT
Found at i:7272919 original size:16 final size:15
Alignment explanation
Indices: 7272893--7272945 Score: 70
Period size: 16 Copynumber: 3.3 Consensus size: 15
7272883 ATTAAAAATG
*
7272893 ATATTCAAATTTAATC
1 ATATT-AAATTTAATA
7272909 ATATTATAATTTAATA
1 ATATTA-AATTTAATA
7272925 ATATTAAATTATAATA
1 ATATTAAATT-TAATA
7272941 ATATT
1 ATATT
7272946 CTTATAATTA
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
15 5 0.15
16 29 0.85
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.47
Consensus pattern (15 bp):
ATATTAAATTTAATA
Found at i:7273134 original size:11 final size:11
Alignment explanation
Indices: 7273120--7273149 Score: 60
Period size: 11 Copynumber: 2.7 Consensus size: 11
7273110 TGCTATATTT
7273120 TATATTTTTAG
1 TATATTTTTAG
7273131 TATATTTTTAG
1 TATATTTTTAG
7273142 TATATTTT
1 TATATTTT
7273150 ACATTTAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.27, C:0.00, G:0.07, T:0.67
Consensus pattern (11 bp):
TATATTTTTAG
Found at i:7273184 original size:17 final size:15
Alignment explanation
Indices: 7273152--7273183 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
7273142 TATATTTTAC
7273152 ATTTAAATTATATAT
1 ATTTAAATTATATAT
*
7273167 ATTTAAATTACATAT
1 ATTTAAATTATATAT
7273182 AT
1 AT
7273184 AATTTTTTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (15 bp):
ATTTAAATTATATAT
Found at i:7273226 original size:18 final size:19
Alignment explanation
Indices: 7273205--7273244 Score: 73
Period size: 18 Copynumber: 2.2 Consensus size: 19
7273195 TTTTATATAG
7273205 ATATAGATTTAA-TTTAAT
1 ATATAGATTTAATTTTAAT
7273223 ATATAGATTTAATTTTAAT
1 ATATAGATTTAATTTTAAT
7273242 ATA
1 ATA
7273245 GATAGATAGA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 12 0.57
19 9 0.43
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50
Consensus pattern (19 bp):
ATATAGATTTAATTTTAAT
Found at i:7273239 original size:24 final size:25
Alignment explanation
Indices: 7273198--7273260 Score: 76
Period size: 24 Copynumber: 2.6 Consensus size: 25
7273188 TTTTTATTTT
* *
7273198 TATATAGATATAGA-TTTAATTTA-A
1 TATATAGATTTA-ATTTTAATATAGA
7273222 TATATAGATTTAATTTTAATATAGA
1 TATATAGATTTAATTTTAATATAGA
*
7273247 TAGATAGATTTAAT
1 TATATAGATTTAAT
7273261 ATAGATTTAC
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
23 1 0.03
24 19 0.56
25 14 0.41
ACGTcount: A:0.44, C:0.00, G:0.10, T:0.46
Consensus pattern (25 bp):
TATATAGATTTAATTTTAATATAGA
Found at i:7273255 original size:25 final size:24
Alignment explanation
Indices: 7273212--7273260 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 24
7273202 TAGATATAGA
* *
7273212 TTTAATTTAATATATAGATTTAAT
1 TTTAATATAATAGATAGATTTAAT
7273236 TTTAATATAGATAGATAGATTTAAT
1 TTTAATATA-ATAGATAGATTTAAT
7273261 ATAGATTTAC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 8 0.36
25 14 0.64
ACGTcount: A:0.43, C:0.00, G:0.08, T:0.49
Consensus pattern (24 bp):
TTTAATATAATAGATAGATTTAAT
Found at i:7278050 original size:21 final size:22
Alignment explanation
Indices: 7278007--7278053 Score: 87
Period size: 22 Copynumber: 2.2 Consensus size: 22
7277997 ACATGTAAGA
7278007 AAAAGAATTAACTTACTAAAAT
1 AAAAGAATTAACTTACTAAAAT
7278029 AAAAGAATTAACTTAC-AAAAT
1 AAAAGAATTAACTTACTAAAAT
7278050 AAAA
1 AAAA
7278054 AAAAATTACA
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
21 9 0.36
22 16 0.64
ACGTcount: A:0.64, C:0.09, G:0.04, T:0.23
Consensus pattern (22 bp):
AAAAGAATTAACTTACTAAAAT
Found at i:7283339 original size:15 final size:16
Alignment explanation
Indices: 7283308--7283341 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
7283298 TATTAAAAAT
*
7283308 TAAAAAATTAATTTAA
1 TAAAAAATTAATATAA
7283324 TAAAAAATT-ATATAA
1 TAAAAAATTAATATAA
7283339 TAA
1 TAA
7283342 TTTTTTAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 8 0.47
16 9 0.53
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (16 bp):
TAAAAAATTAATATAA
Found at i:7283448 original size:23 final size:19
Alignment explanation
Indices: 7283396--7283453 Score: 91
Period size: 19 Copynumber: 3.1 Consensus size: 19
7283386 ATATATAAAT
7283396 ATAAAT-TTTTATTCAATA
1 ATAAATATTTTATTCAATA
*
7283414 ATAAATATTTTATTCATTA
1 ATAAATATTTTATTCAATA
*
7283433 ATAAATATTTTATTTAATA
1 ATAAATATTTTATTCAATA
7283452 AT
1 AT
7283454 TTTTAATACA
Statistics
Matches: 36, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
18 6 0.17
19 30 0.83
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.52
Consensus pattern (19 bp):
ATAAATATTTTATTCAATA
Found at i:7284718 original size:2 final size:2
Alignment explanation
Indices: 7284711--7284742 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
7284701 ACTTTATAAC
*
7284711 AT AT AT AT AT AT AT AT AT AT AT GT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7284743 TTTATTGATA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7285221 original size:20 final size:20
Alignment explanation
Indices: 7285198--7285236 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
7285188 TTTTTAGTAA
*
7285198 TTAAAAATGAAAACAAGTTT
1 TTAAAAATAAAAACAAGTTT
*
7285218 TTAAAAATAAAAATAAGTT
1 TTAAAAATAAAAACAAGTT
7285237 CAAATATGGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.59, C:0.03, G:0.08, T:0.31
Consensus pattern (20 bp):
TTAAAAATAAAAACAAGTTT
Found at i:7285734 original size:20 final size:20
Alignment explanation
Indices: 7285693--7285734 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
7285683 AAAAGAAAAT
*
7285693 AAAATTATTTTTTAAAAGTA
1 AAAATTATTTTTTAAAACTA
*
7285713 AAAATT-TTTTTCTCAAACTA
1 AAAATTATTTTT-TAAAACTA
7285733 AA
1 AA
7285735 CATAGATTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
19 5 0.26
20 14 0.74
ACGTcount: A:0.48, C:0.07, G:0.02, T:0.43
Consensus pattern (20 bp):
AAAATTATTTTTTAAAACTA
Found at i:7286014 original size:23 final size:21
Alignment explanation
Indices: 7285988--7286030 Score: 59
Period size: 23 Copynumber: 2.0 Consensus size: 21
7285978 ATATTTAATA
7285988 TTTTAAAAAATCAAATAAATAAG
1 TTTTAAAAAAT-AAA-AAATAAG
*
7286011 TTTTAAAATATAAAAAATAA
1 TTTTAAAAAATAAAAAATAA
7286031 TATCATCAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 6 0.32
22 3 0.16
23 10 0.53
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.33
Consensus pattern (21 bp):
TTTTAAAAAATAAAAAATAAG
Found at i:7287803 original size:122 final size:120
Alignment explanation
Indices: 7287701--7288140 Score: 309
Period size: 120 Copynumber: 3.6 Consensus size: 120
7287691 ACAATTGCAA
*
7287701 TGTTTAAATAATTCTAAAAACCAATTAATTAAATATAATATAATATTTAAAAAGCATGAAGTTTT
1 TGTTTAAATAATTCT-AAAACCAATTAATTAAATATAATATAATATTTAAAAAGCATG-ACTTTT
* * * *
7287766 TCTTTGTATAAACCTTAATATTGGACATGCACGATGTTTTTATTATTATAAACAAAG
64 TCTTTGTATAAACCTTAATATTGGACATGCACGATGTTTTGATCAATACAAACAAAG
* * * * * *
7287823 TGTTTAGATAATTCTAAAATCAATTAATTAAATATAATGTAATATTTAACAAGTATGACTTTTTT
1 TGTTTAAATAATTCTAAAACCAATTAATTAAATATAATATAATATTTAAAAAGCATGACTTTTTC
* * * ** * * * * *
7287888 TTTTTATAAATTTCC-TAATATTGTACAAGCACGACATTTTAATTATTATAAATACAA-
66 TTTGTATAAA---CCTTAATATTGGACATGCACGATGTTTTGATCAATACAAACA-AAG
* * ** * * * *
7287945 TGTTTGAATTA-TCTTAAAATAAATTAATTAAATAAAATATTATATTTAACAAGCACGA-TATTT
1 TGTTTAAATAATTC-TAAAACCAATTAATTAAATATAATATAATATTTAAAAAGCATGACT-TTT
* * * ** * * * *
7288008 T-TTT-TATAAACGTTGTAATATTAGATAAACACGATATTTTGATCATTATAAACATAG
64 TCTTTGTATAAAC-CT-TAATATTGGACATGCACGATGTTTTGATCAATACAAACAAAG
* * * * * * *
7288065 TGTTTAAATAA-TCATAAAACTAATTAATTAAATAAAATGTAATATTTAATAAGAACGACGTTTT
1 TGTTTAAATAATTC-TAAAACCAATTAATTAAATATAATATAATATTTAAAAAGCATGACTTTTT
*
7288129 CTATTTTATAAA
65 CT-TTGTATAAA
7288141 TGCCTAAGTA
Statistics
Matches: 261, Mismatches: 43, Indels: 27
0.79 0.13 0.08
Matches are distributed among these distances:
117 1 0.00
119 1 0.00
120 105 0.40
121 45 0.17
122 99 0.38
123 10 0.04
ACGTcount: A:0.43, C:0.08, G:0.08, T:0.41
Consensus pattern (120 bp):
TGTTTAAATAATTCTAAAACCAATTAATTAAATATAATATAATATTTAAAAAGCATGACTTTTTC
TTTGTATAAACCTTAATATTGGACATGCACGATGTTTTGATCAATACAAACAAAG
Found at i:7288168 original size:242 final size:241
Alignment explanation
Indices: 7287433--7288181 Score: 562
Period size: 243 Copynumber: 3.1 Consensus size: 241
7287423 ATATTAGACA
* * * * * *
7287433 AGCACGACATTTTGATCATTATAAACACAGTGCTTGAATAATCTTAAAACT-TATTAATTAAATA
1 AGCACGACATTTTAATCATTATAAATACAATGTTTGAATTATCTTAAAA-TAAATTAATTAAATA
** * ** * ** * * ** * *
7287497 AACCACAATATTTAACCAGCACGATATTTTTCTTT-T-T-AGTC-TAATATTGGATAAGTATGAC
65 AAATATAATATTTAAAAAGCACGA-AGTTTTCTTTGTATAAACCTTAATATTAGACAAACACGAT
* * * * *
7287558 ATTTTGGTCATTATATACATAGTGTTTGAATAA-TCTTAAAACCAATTAATTAAA-AAAATGTAA
129 ATTTTGATCATTATAAACAAAGTGTTTAAATAATTC-TAAAATCAATTAATTAAATAAAATGTAA
* ** * * ***
7287621 TATTTAACTACTACAACATTTT-T-TCTTATAAAACACTCTAATATTAGATA-
193 TATTTAACAAGAACGAC-TTTTCTATTTTATAAATTGC-CTAATATT-G-TAC
* * ** ** * * * * * * * **
7287671 AGTACAATGTTTTGGTCAATACAATTGCAATGTTTAAATAATTCTAAAAACCAATTAATTAAATA
1 AGCACGACATTTTAATCATTATAAATACAATGTTTGAATTA-TCTTAAAATAAATTAATTAAATA
* * * **
7287736 TAATATAATATTTAAAAAGCATGAAGTTTTTCTTTGTATAAACCTTAATATTGGACATGCACGAT
65 AAATATAATATTTAAAAAGCACGAAG-TTTTCTTTGTATAAACCTTAATATTAGACAAACACGAT
* * * * *
7287801 GTTTTTATTATTATAAACAAAGTGTTTAGATAATTCTAAAATCAATTAATTAAATATAATGTAAT
129 ATTTTGATCATTATAAACAAAGTGTTTAAATAATTCTAAAATCAATTAATTAAATAAAATGTAAT
* * * * *
7287866 ATTTAACAAGTATGACTTTTTTTTTTTATAAATTTCCTAATATTGTAC
194 ATTTAACAAGAACGACTTTTCTATTTTATAAATTGCCTAATATTGTAC
*
7287914 AAGCACGACATTTTAATTATTATAAATACAATGTTTGAATTATCTTAAAATAAATTAATTAAATA
1 -AGCACGACATTTTAATCATTATAAATACAATGTTTGAATTATCTTAAAATAAATTAATTAAATA
* * * *
7287979 AAATATTATATTTAACAAGCACGATA-TTTT-TTT-TATAAACGTTGTAATATTAGATAAACACG
65 AAATATAATATTTAAAAAGCACGA-AGTTTTCTTTGTATAAAC-CT-TAATATTAGACAAACACG
*
7288041 ATATTTTGATCATTATAAACATAGTGTTTAAATAA-TCATAAAA-CTAATTAATTAAATAAAATG
127 ATATTTTGATCATTATAAACAAAGTGTTTAAATAATTC-TAAAATC-AATTAATTAAATAAAATG
*
7288104 TAATATTTAATAAGAACGACGTTTTCTATTTTATAAA-TGCCTAAGTATTGATATC
190 TAATATTTAACAAGAACGAC-TTTTCTATTTTATAAATTGCCTAA-TATTG-TA-C
*
7288159 -G-ATGACATTTTAATCATTATAAA
1 AGCACGACATTTTAATCATTATAAA
7288182 CGCAAAGATT
Statistics
Matches: 401, Mismatches: 88, Indels: 40
0.76 0.17 0.08
Matches are distributed among these distances:
238 29 0.07
239 44 0.11
240 8 0.02
241 8 0.02
242 117 0.29
243 122 0.30
244 63 0.16
245 10 0.02
ACGTcount: A:0.42, C:0.10, G:0.09, T:0.40
Consensus pattern (241 bp):
AGCACGACATTTTAATCATTATAAATACAATGTTTGAATTATCTTAAAATAAATTAATTAAATAA
AATATAATATTTAAAAAGCACGAAGTTTTCTTTGTATAAACCTTAATATTAGACAAACACGATAT
TTTGATCATTATAAACAAAGTGTTTAAATAATTCTAAAATCAATTAATTAAATAAAATGTAATAT
TTAACAAGAACGACTTTTCTATTTTATAAATTGCCTAATATTGTAC
Found at i:7290105 original size:59 final size:57
Alignment explanation
Indices: 7289980--7290110 Score: 158
Period size: 59 Copynumber: 2.3 Consensus size: 57
7289970 TTTTGTACAG
* *
7289980 GAAAAATTGATACTTTCAACTTTTCCCCAAAATATTTTTTAGAAACTTTAATTTCGA
1 GAAAAATTGATACTTTCAACTTTTCCCCAAAATATTTTTGAGAAACTTTAATTTCAA
* * * *
7290037 GAAAAATTGATATTTTTAACTTTTCCTCCAAAAATCTATTTTTGA-AAAC-TTATTTTTAA
1 GAAAAATTGATACTTTCAACTTTTCC-CC-AAAA--TATTTTTGAGAAACTTTAATTTCAA
7290096 GAAAAATTGATACTT
1 GAAAAATTGATACTT
7290111 GATACTTTCA
Statistics
Matches: 63, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
57 24 0.38
58 2 0.03
59 25 0.40
60 4 0.06
61 8 0.13
ACGTcount: A:0.38, C:0.13, G:0.07, T:0.42
Consensus pattern (57 bp):
GAAAAATTGATACTTTCAACTTTTCCCCAAAATATTTTTGAGAAACTTTAATTTCAA
Found at i:7290155 original size:65 final size:65
Alignment explanation
Indices: 7290043--7290165 Score: 151
Period size: 66 Copynumber: 1.9 Consensus size: 65
7290033 TCGAGAAAAA
* * *
7290043 TTGATATTTTTAACTTTTCCTCCAAAAATCTATTTTTGAAAACTTATTTTTAAGAAAAATTGATA
1 TTGATACTTTCAACTTTTCCTCCAAAAATCTATTTTTGAAAACTTA-TTTAAAGAAAAATTGATA
7290108 C
65 C
* * **
7290109 TTGATACTTTCAACTTTTCCT-CAAAAATATTTTTTTTG-AATTTTATTTAAAGAAAAA
1 TTGATACTTTCAACTTTTCCTCCAAAAAT-CTATTTTTGAAAACTTATTTAAAGAAAAA
7290166 AAAAATAAAA
Statistics
Matches: 49, Mismatches: 7, Indels: 4
0.82 0.12 0.07
Matches are distributed among these distances:
64 11 0.22
65 12 0.24
66 26 0.53
ACGTcount: A:0.37, C:0.11, G:0.06, T:0.46
Consensus pattern (65 bp):
TTGATACTTTCAACTTTTCCTCCAAAAATCTATTTTTGAAAACTTATTTAAAGAAAAATTGATAC
Found at i:7290175 original size:6 final size:6
Alignment explanation
Indices: 7290161--7290229 Score: 74
Period size: 6 Copynumber: 11.8 Consensus size: 6
7290151 TTATTTAAAG
*
7290161 AAAAA- AAAAAT AAAAAAT AAATAAA AAAAAT AAAAAT AAAAAT AAAAAT
1 AAAAAT AAAAAT -AAAAAT AAA-AAT AAAAAT AAAAAT AAAAAT AAAAAT
*
7290210 --AAAG AAAAAT -AAAAT AAAAA
1 AAAAAT AAAAAT AAAAAT AAAAA
7290230 GTATTAAACA
Statistics
Matches: 54, Mismatches: 4, Indels: 11
0.78 0.06 0.16
Matches are distributed among these distances:
4 3 0.06
5 10 0.19
6 30 0.56
7 11 0.20
ACGTcount: A:0.86, C:0.00, G:0.01, T:0.13
Consensus pattern (6 bp):
AAAAAT
Found at i:7290186 original size:21 final size:21
Alignment explanation
Indices: 7290162--7290229 Score: 77
Period size: 21 Copynumber: 3.2 Consensus size: 21
7290152 TATTTAAAGA
7290162 AAAAAAAAATAAAAAATAAAT
1 AAAAAAAAATAAAAAATAAAT
*
7290183 -AAAAAAAATAAAAATAAAAAT
1 AAAAAAAAATAAAAA-ATAAAT
* *
7290204 AAAAATAAA-GAAAAATAAAAT
1 AAAAAAAAATAAAAAAT-AAAT
7290225 AAAAA
1 AAAAA
7290230 GTATTAAACA
Statistics
Matches: 40, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
20 15 0.38
21 18 0.45
22 7 0.17
ACGTcount: A:0.85, C:0.00, G:0.01, T:0.13
Consensus pattern (21 bp):
AAAAAAAAATAAAAAATAAAT
Found at i:7290726 original size:19 final size:19
Alignment explanation
Indices: 7290702--7290747 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
7290692 AAAATAGTTT
* * *
7290702 TCGAAAACTAGAAAGTTGG
1 TCGAAAAATACAAACTTGG
*
7290721 TCGAAAAATTCAAACTTGG
1 TCGAAAAATACAAACTTGG
7290740 TCGAAAAA
1 TCGAAAAA
7290748 GTCATCGAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.46, C:0.13, G:0.20, T:0.22
Consensus pattern (19 bp):
TCGAAAAATACAAACTTGG
Found at i:7290749 original size:32 final size:32
Alignment explanation
Indices: 7290713--7290789 Score: 111
Period size: 31 Copynumber: 2.4 Consensus size: 32
7290703 CGAAAACTAG
* *
7290713 AAAGTTGGTCGAAAAATTCAAACTTGGTCGAA
1 AAAGTTGATCGAAAAATTCAAACTTCGTCGAA
*
7290745 AAAG-TCATCGAAAAATTCAAACTTCGTCGAA
1 AAAGTTGATCGAAAAATTCAAACTTCGTCGAA
*
7290776 AAATTTGATCGAAA
1 AAAGTTGATCGAAA
7290790 TCTAAAAATT
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
31 27 0.69
32 12 0.31
ACGTcount: A:0.44, C:0.14, G:0.17, T:0.25
Consensus pattern (32 bp):
AAAGTTGATCGAAAAATTCAAACTTCGTCGAA
Found at i:7291179 original size:39 final size:38
Alignment explanation
Indices: 7291126--7291285 Score: 139
Period size: 39 Copynumber: 4.1 Consensus size: 38
7291116 ATAAAATAAA
* * *
7291126 ATAAAT-ATATTAATAGATAAATGATAATATGTAAATAG
1 ATAAATAATAATAATAGATAAATAATAATATAT-AATAG
7291164 ATAAATAATAATAATAGATAAATAATAATATATAATAG
1 ATAAATAATAATAATAGATAAATAATAATATATAATAG
* * * *
7291202 ATATATAAACAGATAAGTA-AT-AATAAAAAATATATATTA-
1 ATAAAT-AATA-ATAA-TAGATAAAT-AATAATATATAATAG
* * *
7291241 ATAAATAGTAATAATAGATAAATAAATAATAAATAAATAA
1 ATAAATAATAATAATAGATAAAT-AATAATATAT-AATAG
7291281 ATAAA
1 ATAAA
7291286 ATACAAAATA
Statistics
Matches: 100, Mismatches: 13, Indels: 16
0.78 0.10 0.12
Matches are distributed among these distances:
36 2 0.02
37 6 0.06
38 30 0.30
39 37 0.37
40 23 0.23
41 2 0.02
ACGTcount: A:0.62, C:0.01, G:0.06, T:0.31
Consensus pattern (38 bp):
ATAAATAATAATAATAGATAAATAATAATATATAATAG
Found at i:7291181 original size:17 final size:17
Alignment explanation
Indices: 7291159--7291288 Score: 93
Period size: 17 Copynumber: 8.1 Consensus size: 17
7291149 ATAATATGTA
7291159 AATAGATAAATAATAAT
1 AATAGATAAATAATAAT
7291176 AATAGATAAATAATAAT
1 AATAGATAAATAATAAT
*
7291193 ATATA-ATAGAT-AT-AT
1 A-ATAGATAAATAATAAT
* *
7291208 AAACAGATAAGTAATAAT
1 -AATAGATAAATAATAAT
7291226 -A-A-A-AAAT-AT-AT
1 AATAGATAAATAATAAT
* *
7291237 ATTA-ATAAATAGTAAT
1 AATAGATAAATAATAAT
7291253 AATAGATAAATAAATAAT
1 AATAGATAAAT-AATAAT
*
7291271 AAATAAATAAATAA-AAT
1 -AATAGATAAATAATAAT
7291288 A
1 A
7291289 CAAAATACAG
Statistics
Matches: 90, Mismatches: 10, Indels: 27
0.71 0.08 0.21
Matches are distributed among these distances:
11 2 0.02
12 2 0.02
13 5 0.06
14 5 0.06
15 6 0.07
16 14 0.16
17 34 0.38
18 12 0.13
19 10 0.11
ACGTcount: A:0.65, C:0.01, G:0.05, T:0.29
Consensus pattern (17 bp):
AATAGATAAATAATAAT
Found at i:7291188 original size:4 final size:4
Alignment explanation
Indices: 7291114--7291321 Score: 69
Period size: 4 Copynumber: 51.8 Consensus size: 4
7291104 ACCAAGAAAA
* * * **
7291114 AAAT AAAAT AAAAT AAAT ATAT TAAT AGAT AAAT GATAAT ATGT AAAT
1 AAAT -AAAT -AAAT AAAT AAAT AAAT AAAT AAAT -A-AAT AAAT AAAT
* * * *
7291162 AGAT AAAT -AAT -AAT -AAT AGAT AAAT -AAT AATAT ATAAT AGAT ATAT
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AA-AT A-AAT AAAT AAAT
* * * *
7291208 AAAC AGAT AAGT -AAT -AAT AAA- AAAT ATATAT TAAT AAAT AGTAAT
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT A-A-AT AAAT AAAT A--AAT
* * *
7291253 -AAT AGAT AAAT AAAT -AAT AAAT AAAT AAAT AAAAT ACA- AAAT ACA-
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT -AAAT AAAT AAAT AAAT
* *
7291298 GAAT AAAT AAAA AAAT AAAAT AAA
1 AAAT AAAT AAAT AAAT -AAAT AAA
7291322 AATAAAATAA
Statistics
Matches: 150, Mismatches: 35, Indels: 37
0.68 0.16 0.17
Matches are distributed among these distances:
3 29 0.19
4 85 0.57
5 27 0.18
6 9 0.06
ACGTcount: A:0.66, C:0.01, G:0.05, T:0.27
Consensus pattern (4 bp):
AAAT
Found at i:7291216 original size:50 final size:49
Alignment explanation
Indices: 7291152--7291335 Score: 145
Period size: 50 Copynumber: 3.9 Consensus size: 49
7291142 ATAAATGATA
* *
7291152 ATATGTAAATAGATAAATAATAATAATAGATAAATAATAATATATAATAG
1 ATATATAAATAGATAAATAATAATAATAAATAAATAATAATATA-AATAG
* * * * *
7291202 ATATATAAACAGATAAGTAATAATAAAAAATATAT-ATTA-ATAAATAG
1 ATATATAAATAGATAAATAATAATAATAAATAAATAATAATATAAATAG
* *
7291249 -TA-AT-AATAGATAAATAAATAATAAATAAATAAATAA-AATACAAAATAC
1 ATATATAAATAGATAAAT-AATAAT-AATAAATAAATAATAATA-TAAATAG
* * *
7291297 AGA-ATAAATAAAAAAATAA-AATAA-AAATAAAATAA-AATA
1 ATATATAAATAGATAAATAATAATAATAAAT-AAATAATAATA
7291336 AAACAAACTG
Statistics
Matches: 109, Mismatches: 17, Indels: 19
0.75 0.12 0.13
Matches are distributed among these distances:
44 9 0.08
45 8 0.07
46 16 0.15
47 19 0.17
48 11 0.10
49 8 0.07
50 38 0.35
ACGTcount: A:0.67, C:0.02, G:0.05, T:0.27
Consensus pattern (49 bp):
ATATATAAATAGATAAATAATAATAATAAATAAATAATAATATAAATAG
Found at i:7291271 original size:7 final size:7
Alignment explanation
Indices: 7291125--7291326 Score: 82
Period size: 7 Copynumber: 28.3 Consensus size: 7
7291115 AATAAAATAA
7291125 AATAAAT
1 AATAAAT
*
7291132 ATATTAAT
1 A-ATAAAT
7291140 AGATAAAT
1 A-ATAAAT
*
7291148 GAT-AAT
1 AATAAAT
*
7291154 ATGTAAAT
1 A-ATAAAT
7291162 AGATAAAT
1 A-ATAAAT
7291170 AAT-AAT
1 AATAAAT
*
7291176 AATAGAT
1 AATAAAT
7291183 AA-ATAAT
1 AATA-AAT
*
7291190 AATATAT
1 AATAAAT
*
7291197 AATAGAT
1 AATAAAT
*
7291204 ATATAAAC
1 A-ATAAAT
*
7291212 AGATAAGT
1 A-ATAAAT
7291220 AAT-AAT
1 AATAAAT
*
7291226 AAAAAAT
1 AATAAAT
*
7291233 -ATATATT
1 AATA-AAT
7291240 AATAAAT
1 AATAAAT
*
7291247 AGT-AAT
1 AATAAAT
*
7291253 AATAGAT
1 AATAAAT
7291260 AAATAAAT
1 -AATAAAT
7291268 AATAAAT
1 AATAAAT
7291275 AAATAAAT
1 -AATAAAT
7291283 AAAATACAA-
1 --AATA-AAT
* *
7291292 AATACAG
1 AATAAAT
7291299 AATAAAT
1 AATAAAT
7291306 AA-AAA-
1 AATAAAT
7291311 AATAAAAT
1 AAT-AAAT
7291319 AA-AAAT
1 AATAAAT
7291325 AA
1 AA
7291327 AATAAAATAA
Statistics
Matches: 147, Mismatches: 29, Indels: 39
0.68 0.13 0.18
Matches are distributed among these distances:
5 2 0.01
6 31 0.21
7 57 0.39
8 50 0.34
9 5 0.03
10 2 0.01
ACGTcount: A:0.65, C:0.01, G:0.05, T:0.28
Consensus pattern (7 bp):
AATAAAT
Found at i:7291303 original size:31 final size:28
Alignment explanation
Indices: 7291268--7291338 Score: 97
Period size: 31 Copynumber: 2.4 Consensus size: 28
7291258 ATAAATAAAT
*
7291268 AATAAATAAATAAATAAAATACAAAATACA
1 AATAAATAAAAAAATAAAATA-AAAATA-A
7291298 GAATAAATAAAAAAATAAAATAAAAATAA
1 -AATAAATAAAAAAATAAAATAAAAATAA
7291327 AATAAAATAAAA
1 AAT-AAATAAAA
7291339 CAAACTGAAA
Statistics
Matches: 38, Mismatches: 1, Indels: 4
0.88 0.02 0.09
Matches are distributed among these distances:
28 3 0.08
29 9 0.24
30 6 0.16
31 20 0.53
ACGTcount: A:0.77, C:0.03, G:0.01, T:0.18
Consensus pattern (28 bp):
AATAAATAAAAAAATAAAATAAAAATAA
Found at i:7291319 original size:5 final size:5
Alignment explanation
Indices: 7291271--7291338 Score: 56
Period size: 5 Copynumber: 13.6 Consensus size: 5
7291261 AATAAATAAT
7291271 AAAT- AAAT- AAATA AAATACA AAATA CAGAAT- AAAT- AAA-A AAATA
1 AAATA AAATA AAATA AAAT--A AAATA -A-AATA AAATA AAATA AAATA
7291315 AAATAA AAATA AAATA AAATA AAA
1 AAAT-A AAATA AAATA AAATA AAA
7291339 CAAACTGAAA
Statistics
Matches: 56, Mismatches: 0, Indels: 15
0.79 0.00 0.21
Matches are distributed among these distances:
4 17 0.30
5 25 0.45
6 6 0.11
7 8 0.14
ACGTcount: A:0.78, C:0.03, G:0.01, T:0.18
Consensus pattern (5 bp):
AAATA
Found at i:7292702 original size:11 final size:11
Alignment explanation
Indices: 7292688--7292763 Score: 89
Period size: 12 Copynumber: 6.5 Consensus size: 11
7292678 TTTTCATTCA
7292688 TTTTTTTTATT
1 TTTTTTTTATT
7292699 TTTTTTTTCATT
1 TTTTTTTT-ATT
*
7292711 TTTTTATTATT
1 TTTTTTTTATT
*
7292722 ATTTTTTTCATT
1 -TTTTTTTTATT
7292734 TTATTTTTTCATT
1 TT-TTTTTT-ATT
*
7292747 TTTTTTTCATT
1 TTTTTTTTATT
7292758 TTTTTT
1 TTTTTT
7292764 GTTCAAGCAT
Statistics
Matches: 56, Mismatches: 5, Indels: 8
0.81 0.07 0.12
Matches are distributed among these distances:
11 22 0.39
12 29 0.52
13 5 0.09
ACGTcount: A:0.12, C:0.05, G:0.00, T:0.83
Consensus pattern (11 bp):
TTTTTTTTATT
Found at i:7292705 original size:14 final size:14
Alignment explanation
Indices: 7292688--7292742 Score: 51
Period size: 14 Copynumber: 4.1 Consensus size: 14
7292678 TTTTCATTCA
7292688 TTTTTTTTA--TTT
1 TTTTTTTTATTTTT
*
7292700 TTTTTTTCATTTTT
1 TTTTTTTTATTTTT
* *
7292714 TTATTATTATTTTT
1 TTTTTTTTATTTTT
**
7292728 TTCATTTTATTTTT
1 TTTTTTTTATTTTT
7292742 T
1 T
7292743 CATTTTTTTT
Statistics
Matches: 34, Mismatches: 7, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
12 8 0.24
14 26 0.76
ACGTcount: A:0.13, C:0.04, G:0.00, T:0.84
Consensus pattern (14 bp):
TTTTTTTTATTTTT
Found at i:7292743 original size:13 final size:12
Alignment explanation
Indices: 7292677--7292768 Score: 109
Period size: 11 Copynumber: 7.6 Consensus size: 12
7292667 TGAGCCCTCC
7292677 TTTTTCATTCATTT
1 TTTTTCATT--TTT
7292691 TTTTT-ATTTTT
1 TTTTTCATTTTT
7292702 TTTTTCATTTTT
1 TTTTTCATTTTT
* *
7292714 TTATT-ATTATT
1 TTTTTCATTTTT
7292725 TTTTTCATTTTAT
1 TTTTTCATTTT-T
7292738 TTTTTCA-TTTT
1 TTTTTCATTTTT
7292749 TTTTTCATTTTT
1 TTTTTCATTTTT
7292761 TTTGTTCA
1 TTT-TTCA
7292769 AGCATAGTAT
Statistics
Matches: 69, Mismatches: 4, Indels: 11
0.82 0.05 0.13
Matches are distributed among these distances:
11 25 0.36
12 24 0.35
13 15 0.22
14 5 0.07
ACGTcount: A:0.13, C:0.08, G:0.01, T:0.78
Consensus pattern (12 bp):
TTTTTCATTTTT
Found at i:7303232 original size:57 final size:57
Alignment explanation
Indices: 7303171--7303498 Score: 441
Period size: 58 Copynumber: 5.7 Consensus size: 57
7303161 TTGTACAGGA
* *
7303171 AAAATTGATACTTTCAACTTTTCC-CCAAAATATTTTTTAGAAACTTTAATTTTGAA-G
1 AAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTAGAAAC-TT-ATTTTCAAGG
* * *
7303228 AAAATTGATACTTTCAACTTTTCCTCCAAAAATCCATTTTTGA-AAACTTATTTTTAAGA
1 AAAATTGATACTTTCAACTTTTCCT-CAAAAAT--ATTTTTTAGAAACTTATTTTCAAGG
* *
7303287 AAAATTGATACTTTTAACTTTTCCTCAAAAATCCATTTTTCA-AAACTTATTTTCAAGG
1 AAAATTGATACTTTCAACTTTTCCTCAAAAAT--ATTTTTTAGAAACTTATTTTCAAGG
* *
7303345 AAAATTGATATTTTCAACTTTTTCTCAAAAATATTTTTTAGAAAGCTTATTTTCAAGG
1 AAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTAGAAA-CTTATTTTCAAGG
* *
7303403 AAAATTGGTACTTTTAACTTTTCCTCAAAAATA-TTTTTAGAAAGCTTATTTTCAAGG
1 AAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTAGAAA-CTTATTTTCAAGG
7303460 AAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTT
1 AAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTT
7303499 TGAATTTTAT
Statistics
Matches: 245, Mismatches: 18, Indels: 15
0.88 0.06 0.05
Matches are distributed among these distances:
56 7 0.03
57 82 0.33
58 113 0.46
59 32 0.13
60 4 0.02
61 7 0.03
ACGTcount: A:0.36, C:0.14, G:0.07, T:0.43
Consensus pattern (57 bp):
AAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTAGAAACTTATTTTCAAGG
Found at i:7303375 original size:27 final size:27
Alignment explanation
Indices: 7303286--7303376 Score: 71
Period size: 27 Copynumber: 3.2 Consensus size: 27
7303276 TATTTTTAAG
*
7303286 AAAAATTGATACTTTT-AACTTTTCCTC
1 AAAAATTGATA-TTTTCAACTTTTTCTC
**
7303313 AAAAATCCAT-TTTTCAAAACTTATTT-TC
1 AAAAATTGATATTTTC--AACTT-TTTCTC
7303341 AAGGAAAATTGATATTTTCAACTTTTTCTC
1 -A--AAAATTGATATTTTCAACTTTTTCTC
7303371 AAAAAT
1 AAAAAT
7303377 ATTTTTTAGA
Statistics
Matches: 50, Mismatches: 5, Indels: 18
0.68 0.07 0.25
Matches are distributed among these distances:
25 4 0.08
27 13 0.26
28 7 0.14
29 7 0.14
30 7 0.14
31 7 0.14
32 5 0.10
ACGTcount: A:0.38, C:0.15, G:0.04, T:0.42
Consensus pattern (27 bp):
AAAAATTGATATTTTCAACTTTTTCTC
Found at i:7303523 original size:5 final size:5
Alignment explanation
Indices: 7303515--7303564 Score: 59
Period size: 5 Copynumber: 9.8 Consensus size: 5
7303505 TTATTTAAAG
7303515 AAAAT AAAAT AAAAT -AAAT GAAAAT AAAAAT AAAGA- AAAAT AAAAT
1 AAAAT AAAAT AAAAT AAAAT -AAAAT -AAAAT AAA-AT AAAAT AAAAT
7303561 AAAA
1 AAAA
7303565 AGTATTAAAC
Statistics
Matches: 40, Mismatches: 1, Indels: 8
0.82 0.02 0.16
Matches are distributed among these distances:
4 5 0.12
5 25 0.62
6 10 0.25
ACGTcount: A:0.80, C:0.00, G:0.04, T:0.16
Consensus pattern (5 bp):
AAAAT
Found at i:7303608 original size:9 final size:10
Alignment explanation
Indices: 7303585--7303620 Score: 56
Period size: 10 Copynumber: 3.6 Consensus size: 10
7303575 AATTCTAATC
7303585 TAATCAATAAA
1 TAAT-AATAAA
7303596 TAATAAT-AA
1 TAATAATAAA
7303605 TAATAATAAA
1 TAATAATAAA
7303615 TAATAA
1 TAATAA
7303621 ATGAAAGAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
9 9 0.38
10 11 0.46
11 4 0.17
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.31
Consensus pattern (10 bp):
TAATAATAAA
Found at i:7304105 original size:31 final size:32
Alignment explanation
Indices: 7304067--7304136 Score: 106
Period size: 31 Copynumber: 2.2 Consensus size: 32
7304057 TGAAAAGCTG
* *
7304067 ACTGAAAAATTCAAACTTGATCAAAAAAGTC-
1 ACTGAAAAATTCAAAATTCATCAAAAAAGTCA
*
7304098 ACTGAAAAATTCAAAATTCATCAAAAAATTCA
1 ACTGAAAAATTCAAAATTCATCAAAAAAGTCA
7304130 ACTGAAA
1 ACTGAAA
7304137 TCTGAAAATT
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
31 28 0.80
32 7 0.20
ACGTcount: A:0.54, C:0.16, G:0.07, T:0.23
Consensus pattern (32 bp):
ACTGAAAAATTCAAAATTCATCAAAAAAGTCA
Found at i:7304513 original size:26 final size:25
Alignment explanation
Indices: 7304461--7304628 Score: 113
Period size: 25 Copynumber: 6.9 Consensus size: 25
7304451 AAATAAAATA
*
7304461 AAATAAAAAAT-ATATATTAATAGAT
1 AAATAAATAATAATATA-TAATAGAT
* *
7304486 AAAT-GATAAT-ATGTA-AATAGAT
1 AAATAAATAATAATATATAATAGAT
7304508 AAAT-AATAATAATA-ATAATA-AT
1 AAATAAATAATAATATATAATAGAT
*
7304530 AGATAAATAATAATATATAATAGAT
1 AAATAAATAATAATATATAATAGAT
* * * *
7304555 ATATAAACAGATAAGTAATACTAAAATAT
1 AAATAAATA-ATAA-T-ATA-TAATAGAT
* * *
7304584 ATATTAATAAATAGTA-ATAATAGAT
1 AAATAAAT-AATAATATATAATAGAT
7304609 AAATAAATAATAA-ATA-AATA
1 AAATAAATAATAATATATAATA
7304629 AAATAAAAAT
Statistics
Matches: 114, Mismatches: 18, Indels: 24
0.73 0.12 0.15
Matches are distributed among these distances:
22 22 0.19
23 21 0.18
24 19 0.17
25 25 0.22
26 5 0.04
27 2 0.02
28 4 0.04
29 15 0.13
30 1 0.01
ACGTcount: A:0.62, C:0.01, G:0.06, T:0.31
Consensus pattern (25 bp):
AAATAAATAATAATATATAATAGAT
Found at i:7304517 original size:3 final size:3
Alignment explanation
Indices: 7304509--7304669 Score: 71
Period size: 3 Copynumber: 49.7 Consensus size: 3
7304499 TAAATAGATA
7304509 AAT AAT AAT AAT AAT AAT AAT AGAT AAAT AAT AAT ATAT AAT AGAT ATAT
1 AAT AAT AAT AAT AAT AAT AAT A-AT -AAT AAT AAT A-AT AAT A-AT A-AT
* * * *
7304559 AAAC AGAT AAGT AAT ACT AA- AAT ATAT ATT AAT AAAT AGT AAT AAT
1 -AAT A-AT AA-T AAT AAT AAT AAT A-AT AAT AAT -AAT AAT AAT AAT
* *
7304605 AGAT AAAT AAAT AAT AAAT AAAT AA- AAT AAA AAT ACAG AAT AAAT AA-
1 A-AT -AAT -AAT AAT -AAT -AAT AAT AAT AAT AAT A-AT AAT -AAT AAT
*
7304652 AAA AAT AA- AAT AA- AAT AA
1 AAT AAT AAT AAT AAT AAT AA
7304670 CACAAACTGA
Statistics
Matches: 125, Mismatches: 14, Indels: 38
0.71 0.08 0.21
Matches are distributed among these distances:
2 10 0.08
3 68 0.54
4 44 0.35
5 3 0.02
ACGTcount: A:0.66, C:0.02, G:0.04, T:0.27
Consensus pattern (3 bp):
AAT
Found at i:7304530 original size:48 final size:46
Alignment explanation
Indices: 7304461--7304561 Score: 132
Period size: 48 Copynumber: 2.2 Consensus size: 46
7304451 AAATAAAATA
* * *
7304461 AAATAAAAAATATATATTAATAGATAAATGATAATATGTAAATAGAT
1 AAATAAAAAATATATAATAATAGATAAATAATAATATAT-AATAGAT
7304508 AAATAATAATAATA-ATAATAATAGATAAATAATAATATATAATAGAT
1 AAATAA-AA-AATATATAATAATAGATAAATAATAATATATAATAGAT
*
7304555 ATATAAA
1 AAATAAA
7304562 CAGATAAGTA
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
46 1 0.02
47 18 0.38
48 25 0.52
49 4 0.08
ACGTcount: A:0.62, C:0.00, G:0.06, T:0.32
Consensus pattern (46 bp):
AAATAAAAAATATATAATAATAGATAAATAATAATATATAATAGAT
Found at i:7304535 original size:10 final size:10
Alignment explanation
Indices: 7304501--7304610 Score: 63
Period size: 10 Copynumber: 10.9 Consensus size: 10
7304491 ATAATATGTA
7304501 AATAGAT-A-
1 AATAGATAAT
7304509 AATA-ATAAT
1 AATAGATAAT
7304518 AATA-ATAAT
1 AATAGATAAT
7304527 AATAGATAAAT
1 AATAGAT-AAT
7304538 AATA-ATATAT
1 AATAGATA-AT
7304548 AATAGATATAT
1 AATAGATA-AT
*
7304559 AAACAGATAAGT
1 -AATAGATAA-T
* *
7304571 AATACTAAAAT
1 AATA-GATAAT
*
7304582 ATATA-TTAAT
1 A-ATAGATAAT
7304592 AAATAG-TAAT
1 -AATAGATAAT
7304602 AATAGATAA
1 AATAGATAA
7304611 ATAAATAATA
Statistics
Matches: 83, Mismatches: 6, Indels: 24
0.73 0.05 0.21
Matches are distributed among these distances:
7 2 0.02
8 5 0.06
9 19 0.23
10 23 0.28
11 20 0.24
12 14 0.17
ACGTcount: A:0.61, C:0.02, G:0.06, T:0.31
Consensus pattern (10 bp):
AATAGATAAT
Found at i:7304596 original size:4 final size:4
Alignment explanation
Indices: 7304589--7304665 Score: 52
Period size: 4 Copynumber: 18.5 Consensus size: 4
7304579 AATATATATT
*
7304589 AATA AATA GTAAT- AATA GATA AATA AAT- AATA AATA AATAA AATA AA-A
1 AATA AATA --AATA AATA AATA AATA AATA AATA AATA AAT-A AATA AATA
* *
7304637 ATACA GAATA AATA AAAA AATAA AATA AA
1 A-ATA -AATA AATA AATA AAT-A AATA AA
7304666 ATAACACAAA
Statistics
Matches: 59, Mismatches: 5, Indels: 18
0.72 0.06 0.22
Matches are distributed among these distances:
3 8 0.14
4 36 0.61
5 11 0.19
6 4 0.07
ACGTcount: A:0.73, C:0.01, G:0.04, T:0.22
Consensus pattern (4 bp):
AATA
Found at i:7304638 original size:26 final size:24
Alignment explanation
Indices: 7304609--7304665 Score: 78
Period size: 26 Copynumber: 2.3 Consensus size: 24
7304599 AATAATAGAT
*
7304609 AAATAAATAATAAATAAATAAAATAA
1 AAATAAAGAATAAATAAA-AAAAT-A
*
7304635 AAATACAGAATAAATAAAAAAATA
1 AAATAAAGAATAAATAAAAAAATA
7304659 AAATAAA
1 AAATAAA
7304666 ATAACACAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
24 7 0.25
25 5 0.18
26 16 0.57
ACGTcount: A:0.77, C:0.02, G:0.02, T:0.19
Consensus pattern (24 bp):
AAATAAAGAATAAATAAAAAAATA
Found at i:7305504 original size:23 final size:22
Alignment explanation
Indices: 7305463--7305505 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
7305453 TGTAGATATG
**
7305463 ATTTTTTTTATTTGTATTTTTT
1 ATTTTTTTTATTTACATTTTTT
7305485 ATTTTTTATTATTTACATTTT
1 ATTTTTT-TTATTTACATTTT
7305506 AGGTTATTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 7 0.39
23 11 0.61
ACGTcount: A:0.19, C:0.02, G:0.02, T:0.77
Consensus pattern (22 bp):
ATTTTTTTTATTTACATTTTTT
Found at i:7306163 original size:31 final size:31
Alignment explanation
Indices: 7306111--7306173 Score: 83
Period size: 31 Copynumber: 2.0 Consensus size: 31
7306101 GATTTTAATT
* *
7306111 AAAAAATAAAATAATAGTTTTATAATATTGA
1 AAAAAATAAAATAACAGTTTTACAATATTGA
*
7306142 AAAAAATAAAATGAACA-TTTTACAATGTTGA
1 AAAAAATAAAAT-AACAGTTTTACAATATTGA
7306173 A
1 A
7306174 TAGGTGTTAC
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
31 25 0.89
32 3 0.11
ACGTcount: A:0.57, C:0.03, G:0.08, T:0.32
Consensus pattern (31 bp):
AAAAAATAAAATAACAGTTTTACAATATTGA
Found at i:7314152 original size:14 final size:14
Alignment explanation
Indices: 7314133--7314161 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
7314123 GATTCCCTCA
7314133 ATTTTATTAAAGTT
1 ATTTTATTAAAGTT
7314147 ATTTTATTAAAGTT
1 ATTTTATTAAAGTT
7314161 A
1 A
7314162 CCTTATTAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.38, C:0.00, G:0.07, T:0.55
Consensus pattern (14 bp):
ATTTTATTAAAGTT
Found at i:7314167 original size:14 final size:14
Alignment explanation
Indices: 7314136--7314169 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
7314126 TCCCTCAATT
**
7314136 TTATTAAAGTTATT
1 TTATTAAAGTTACC
7314150 TTATTAAAGTTACC
1 TTATTAAAGTTACC
7314164 TTATTA
1 TTATTA
7314170 GTTTGTTTGC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.35, C:0.06, G:0.06, T:0.53
Consensus pattern (14 bp):
TTATTAAAGTTACC
Found at i:7315451 original size:18 final size:18
Alignment explanation
Indices: 7315428--7315478 Score: 57
Period size: 18 Copynumber: 2.8 Consensus size: 18
7315418 ATTTTGATTT
*
7315428 TGATAATATTAAAAATAA
1 TGATAATAATAAAAATAA
*
7315446 TGATAATAATAAAATTAA
1 TGATAATAATAAAAATAA
* * *
7315464 TTATTATACTAAAAA
1 TGATAATAATAAAAA
7315479 AATTAAAATT
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.59, C:0.02, G:0.04, T:0.35
Consensus pattern (18 bp):
TGATAATAATAAAAATAA
Found at i:7315631 original size:21 final size:20
Alignment explanation
Indices: 7315577--7315688 Score: 84
Period size: 19 Copynumber: 5.3 Consensus size: 20
7315567 TTTAAAAATG
*
7315577 TATTGATAA-ATTATTTATA
1 TATTAATAATATTATTTATA
* *
7315596 TATT-TTAATACTATTTATA
1 TATTAATAATATTATTTATA
7315615 TATTAATACATATTATTTTATTA
1 TATTAATA-ATATTA-TTTA-TA
* *
7315638 TATAATAATAAATTTTATTTATT
1 TAT--TAAT-AATATTATTTATA
*
7315661 TATTATATAATAATATTTATTA
1 TATTA-ATAATATTATTTA-TA
7315683 TATTAA
1 TATTAA
7315689 ATTAATAAAA
Statistics
Matches: 74, Mismatches: 9, Indels: 18
0.73 0.09 0.18
Matches are distributed among these distances:
18 3 0.04
19 17 0.23
20 2 0.03
21 17 0.23
22 12 0.16
23 9 0.12
24 4 0.05
25 9 0.12
26 1 0.01
ACGTcount: A:0.42, C:0.02, G:0.01, T:0.55
Consensus pattern (20 bp):
TATTAATAATATTATTTATA
Found at i:7315639 original size:25 final size:24
Alignment explanation
Indices: 7315610--7315704 Score: 81
Period size: 25 Copynumber: 3.9 Consensus size: 24
7315600 TTAATACTAT
7315610 TTATATATTAATACATATTATTTTA
1 TTATATATTAATA-ATATTATTTTA
* *
7315635 TTATATAATAATAA-ATTTTATTTA
1 TTATATATTAATAATATTAT-TTTA
*
7315659 TT-TATTATATAATAATATTTATTATA
1 TTATA-TAT-TAATAATA-TTATTTTA
*
7315685 TTA-A-ATTAATAAAATTATTT
1 TTATATATTAATAATATTATTT
7315705 AAAAATTTTA
Statistics
Matches: 57, Mismatches: 7, Indels: 15
0.72 0.09 0.19
Matches are distributed among these distances:
22 5 0.09
23 13 0.23
24 11 0.19
25 18 0.32
26 7 0.12
27 3 0.05
ACGTcount: A:0.44, C:0.01, G:0.00, T:0.55
Consensus pattern (24 bp):
TTATATATTAATAATATTATTTTA
Found at i:7316395 original size:21 final size:21
Alignment explanation
Indices: 7316371--7316416 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
7316361 TATTAATTTT
*
7316371 AATTTTATTAATATAATAATA
1 AATTTTACTAATATAATAATA
* *
7316392 AATTTTACTATTATAATAATT
1 AATTTTACTAATATAATAATA
7316413 AATT
1 AATT
7316417 ATCTTTATTA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (21 bp):
AATTTTACTAATATAATAATA
Found at i:7316585 original size:15 final size:16
Alignment explanation
Indices: 7316565--7316598 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
7316555 TTGTATTTTC
7316565 TTTTTCAT-TTTGTAT
1 TTTTTCATATTTGTAT
7316580 TTTTTCATATTTGTAT
1 TTTTTCATATTTGTAT
7316596 TTT
1 TTT
7316599 AAGAAATGTA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 8 0.44
16 10 0.56
ACGTcount: A:0.15, C:0.06, G:0.06, T:0.74
Consensus pattern (16 bp):
TTTTTCATATTTGTAT
Found at i:7318295 original size:2 final size:2
Alignment explanation
Indices: 7318290--7318328 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
7318280 ATATATATAT
7318290 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
7318329 TGTTACGTCA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:7318842 original size:3 final size:3
Alignment explanation
Indices: 7318834--7318875 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
7318824 ACCAGGGTTT
7318834 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
7318876 CAGTAATTCG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:7322498 original size:58 final size:57
Alignment explanation
Indices: 7322424--7322659 Score: 239
Period size: 58 Copynumber: 4.1 Consensus size: 57
7322414 GAATACCAAT
7322424 AAAAAATATTTCAAAAAATATTTTAAGAAAAACTTGAAATATCAATTTTTCTTAAATA
1 AAAAAATATTTCAAAAAATATTTTAAGAAAAA-TTGAAATATCAATTTTTCTTAAATA
* * * *
7322482 AAAAAATATTTTAAAAAATATCTTAAGGAACAATT-AAAGTATCAATTTTTTTTAAAATA
1 AAAAAATATTTCAAAAAATATTTTAA-GAAAAATTGAAA-TATCAATTTTTCTT-AAATA
* * * * *
7322541 AAAAAATATTTCAAGAAAT-GTTTAAGAAAAAATTGAAGTATCGATTTTCCTTAAA-A
1 AAAAAATATTTCAAAAAATATTTTAAG-AAAAATTGAAATATCAATTTTTCTTAAATA
* * * *
7322597 CAAAAATAATTTCAAAAAA-A-ATTAAGAAAAGAGTTGATATATCAATTTTTCCTTAAATG
1 AAAAAAT-ATTTCAAAAAATATTTTAAGAAAA-A-TTGAAATATCAATTTTT-CTTAAATA
7322656 AAAA
1 AAAA
7322660 TTTTCAAGAA
Statistics
Matches: 145, Mismatches: 22, Indels: 21
0.77 0.12 0.11
Matches are distributed among these distances:
55 4 0.03
56 13 0.09
57 30 0.21
58 66 0.46
59 32 0.22
ACGTcount: A:0.53, C:0.07, G:0.07, T:0.34
Consensus pattern (57 bp):
AAAAAATATTTCAAAAAATATTTTAAGAAAAATTGAAATATCAATTTTTCTTAAATA
Found at i:7322653 original size:116 final size:117
Alignment explanation
Indices: 7322424--7322653 Score: 265
Period size: 116 Copynumber: 2.0 Consensus size: 117
7322414 GAATACCAAT
* * *
7322424 AAAAAATATTTCAAAAAATATTTTAAGAAAAACTTGAAATATCAATTTTTCTTAAATAAAAAAAT
1 AAAAAATATTTCAAAAAATAGTTTAAGAAAAAATTGAAATATCAATTTTCCTTAAATAAAAAAAT
* * * *
7322489 ATTTTAAAAAATATCTTAAGGAACAATTAAAGTATCAATTTTTTTTAAAATA
66 ATTTCAAAAAATATATTAAGGAAAAATTAAAGTATCAATTTTTCTTAAAATA
* * * *
7322541 AAAAAATATTTCAAGAAAT-GTTTAAGAAAAAATTGAAGTATCGATTTTCCTTAAA-ACAAAAAT
1 AAAAAATATTTCAAAAAATAGTTTAAGAAAAAATTGAAATATCAATTTTCCTTAAATAAAAAAAT
*
7322604 AATTTCAAAAAA-A-ATTAA-GAAAAGAGTTGATA-TATCAATTTTTCCTTAAA
66 -ATTTCAAAAAATATATTAAGGAAAA-A-TT-AAAGTATCAATTTTT-CTTAAA
7322654 TGAAAATTTT
Statistics
Matches: 96, Mismatches: 12, Indels: 11
0.81 0.10 0.09
Matches are distributed among these distances:
113 4 0.04
114 5 0.05
115 21 0.22
116 48 0.50
117 18 0.19
ACGTcount: A:0.52, C:0.07, G:0.07, T:0.34
Consensus pattern (117 bp):
AAAAAATATTTCAAAAAATAGTTTAAGAAAAAATTGAAATATCAATTTTCCTTAAATAAAAAAAT
ATTTCAAAAAATATATTAAGGAAAAATTAAAGTATCAATTTTTCTTAAAATA
Found at i:7325595 original size:3 final size:3
Alignment explanation
Indices: 7325587--7325611 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
7325577 AAAATTATAG
7325587 TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT T
7325612 TTAAGCATTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:7327175 original size:36 final size:36
Alignment explanation
Indices: 7327135--7327253 Score: 89
Period size: 36 Copynumber: 3.2 Consensus size: 36
7327125 GGACGATTGA
7327135 GATTAAACCGCAAGTGAAAAAAATAAAAGTGACTAG
1 GATTAAACCGCAAGTGAAAAAAATAAAAGTGACTAG
** * ** *
7327171 GATTAAACTACAAGTCAGGAAAATAAAAGCGACT-G
1 GATTAAACCGCAAGTGAAAAAAATAAAAGTGACTAG
* * * **
7327206 AAATTAAATCGCAAGCTAGGAAACTATAGAAA-TGACTAG
1 -GATTAAACCGCAAG-T-GAAAAAAATA-AAAGTGACTAG
7327245 GATTAAACC
1 GATTAAACC
7327254 ATAAGTCAAA
Statistics
Matches: 59, Mismatches: 19, Indels: 8
0.69 0.22 0.09
Matches are distributed among these distances:
35 1 0.02
36 38 0.64
37 1 0.02
38 15 0.25
39 4 0.07
ACGTcount: A:0.50, C:0.13, G:0.18, T:0.18
Consensus pattern (36 bp):
GATTAAACCGCAAGTGAAAAAAATAAAAGTGACTAG
Found at i:7327588 original size:224 final size:220
Alignment explanation
Indices: 7327285--7327738 Score: 502
Period size: 224 Copynumber: 2.0 Consensus size: 220
7327275 ATCCGGGCTA
* * * ** **
7327285 AACCGCAAGTCAGAAAGAATAAAAGTGGTCGAGATTAAATCATGAGTCAGAGAGCTATAGGAATG
1 AACCGCAAGTCAGAAAGAATAAAAGTGCTCAAGATTAAACCACAAGTCAGAGAGCTATAAAAATG
* * *
7327350 ATCGGGACTAAACCACAAGTGAGAGATTGACGATGATCGAGACTGAACTGCAGGTCAAAAAAAAA
66 ATCGGGACTAAACCACAAGTGAGAGATTAACAATGATCGAGACTGAACTGCAAGTC--AAAAAAA
* * * * *
7327415 AAATAAAAATGACCAGGACTAAATCACAAGTC-AGGTAACTAATAAAAATGATCGGGATTGAATC
129 AAATAAAAATGACCAGGACTAAATCACAAGTCGA-G-AAC--ATAAAAATAACCAGGATTAAACC
*
7327479 ACGAGTCAAAGATTAATGATGACTGGGAATG
190 ACGAGTCAAAGATTAACGATGACTGGGAATG
* *
7327510 AACCGTAAGTCAGAAA-AATAAAAGTGACT-AAGATTAAACCACAAGTC-GGGAAGCTATAAAAA
1 AACCGCAAGTCAGAAAGAATAAAAGTG-CTCAAGATTAAACCACAAGTCAGAG-AGCTATAAAAA
** * * * * * * *
7327572 TGATCGGGTTTAAACCACTAGTTAGAGATTAACAATGATTGGGATTGAATTGCAAGTCAGAAAAA
64 TGATCGGGACTAAACCACAAGTGAGAGATTAACAATGATCGAGACTGAACTGCAAGTCAAAAAAA
* * * *
7327637 AAATAAAAATGACTAGGATTAAATCGCAAGTCGAGAACATAAGAATAACCAGGATTAAACCACGA
129 AAATAAAAATGACCAGGACTAAATCACAAGTCGAGAACATAAAAATAACCAGGATTAAACCACGA
* * *
7327702 GTCAAAGATTAACGATGATTGGGACTA
194 GTCAAAGATTAACGATGACTGGGAATG
7327729 AACCGCAAGT
1 AACCGCAAGT
7327739 GAGAGATTAA
Statistics
Matches: 191, Mismatches: 35, Indels: 12
0.80 0.15 0.05
Matches are distributed among these distances:
219 53 0.28
221 3 0.02
222 36 0.19
223 3 0.02
224 80 0.42
225 16 0.08
ACGTcount: A:0.45, C:0.14, G:0.22, T:0.20
Consensus pattern (220 bp):
AACCGCAAGTCAGAAAGAATAAAAGTGCTCAAGATTAAACCACAAGTCAGAGAGCTATAAAAATG
ATCGGGACTAAACCACAAGTGAGAGATTAACAATGATCGAGACTGAACTGCAAGTCAAAAAAAAA
ATAAAAATGACCAGGACTAAATCACAAGTCGAGAACATAAAAATAACCAGGATTAAACCACGAGT
CAAAGATTAACGATGACTGGGAATG
Found at i:7327723 original size:110 final size:111
Alignment explanation
Indices: 7327317--7327738 Score: 368
Period size: 110 Copynumber: 3.8 Consensus size: 111
7327307 AAGTGGTCGA
** * ** * * * * *
7327317 GATTAAATCATGAGTCAGAGAGCTATAGGAATGATCGGGACTAAACCACAAGTGAGAGATTGACG
1 GATTAAATCACAAGTC-GAGAACTATAAAAATGATCGGGATTAAACCACGAGTCAAAGATTAACG
* * * * * * *
7327382 ATGATCGAGACTGAACTGCAGGTCAAAAAAAAAAAATAAAAATGACCAG
65 ATGATTGGGAATGAACCGCAAGTC--AGAAAAAAAATAAAAATGACTAG
* * *
7327431 GACTAAATCACAAGTC-AGGTAACTAATAAAAATGATCGGGATTGAATCACGAGTCAAAGATTAA
1 GATTAAATCACAAGTCGA-G-AACT-ATAAAAATGATCGGGATTAAACCACGAGTCAAAGATTAA
* * * * *
7327495 TGATGACTGGGAATGAACCGTAAGTCAG---AAAAATAAAAGTGACTAA
63 CGATGATTGGGAATGAACCGCAAGTCAGAAAAAAAATAAAAATGACTAG
* * * * * * *
7327541 GATTAAACCACAAGTCGGGAAGCTATAAAAATGATCGGGTTTAAACCACTAGTTAGAGATTAACA
1 GATTAAATCACAAGTCGAGAA-CTATAAAAATGATCGGGATTAAACCACGAGTCAAAGATTAACG
* **
7327606 ATGATTGGGATTGAATTGCAAGTCAGAAAAAAAATAAAAATGACTAG
65 ATGATTGGGAATGAACCGCAAGTCAGAAAAAAAATAAAAATGACTAG
* * * * *
7327653 GATTAAATCGCAAGTCGAGAAC-ATAAGAATAACCAGGATTAAACCACGAGTCAAAGATTAACGA
1 GATTAAATCACAAGTCGAGAACTATAAAAATGATCGGGATTAAACCACGAGTCAAAGATTAACGA
* *
7327717 TGATTGGGACTAAACCGCAAGT
66 TGATTGGGAATGAACCGCAAGT
7327739 GAGAGATTAA
Statistics
Matches: 241, Mismatches: 59, Indels: 20
0.75 0.18 0.06
Matches are distributed among these distances:
109 56 0.23
110 83 0.34
111 1 0.00
112 35 0.15
113 2 0.01
114 16 0.07
115 48 0.20
ACGTcount: A:0.45, C:0.14, G:0.22, T:0.20
Consensus pattern (111 bp):
GATTAAATCACAAGTCGAGAACTATAAAAATGATCGGGATTAAACCACGAGTCAAAGATTAACGA
TGATTGGGAATGAACCGCAAGTCAGAAAAAAAATAAAAATGACTAG
Found at i:7340356 original size:21 final size:19
Alignment explanation
Indices: 7340309--7340357 Score: 53
Period size: 21 Copynumber: 2.4 Consensus size: 19
7340299 TGAAGATTCG
7340309 GATTTTAGGATTTTGGGTT
1 GATTTTAGGATTTTGGGTT
*
7340328 GAGTTTTTAGGGTTTTAGGGTTT
1 GA--TTTTAGGATTTT-GGG-TT
7340351 GATTTTA
1 GATTTTA
7340358 AAGTTTAGAG
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
19 2 0.08
21 16 0.64
22 3 0.12
23 4 0.16
ACGTcount: A:0.16, C:0.00, G:0.31, T:0.53
Consensus pattern (19 bp):
GATTTTAGGATTTTGGGTT
Found at i:7340432 original size:21 final size:21
Alignment explanation
Indices: 7340400--7340439 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
7340390 GGTATAAAAG
7340400 GTTTAGGATTTTGATTTTAGT
1 GTTTAGGATTTTGATTTTAGT
*
7340421 GTTTAAGG-TTTTGTTTTTA
1 GTTT-AGGATTTTGATTTTA
7340440 AGAAAATGCG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 14 0.82
22 3 0.18
ACGTcount: A:0.17, C:0.00, G:0.23, T:0.60
Consensus pattern (21 bp):
GTTTAGGATTTTGATTTTAGT
Found at i:7340663 original size:3 final size:3
Alignment explanation
Indices: 7340649--7340710 Score: 108
Period size: 3 Copynumber: 21.0 Consensus size: 3
7340639 AATAAGAAAA
7340649 ATT ATT -TT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
*
7340696 GTT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT
7340711 TAAGTATTTT
Statistics
Matches: 56, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
2 2 0.04
3 54 0.96
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.68
Consensus pattern (3 bp):
ATT
Found at i:7347880 original size:16 final size:16
Alignment explanation
Indices: 7347859--7347889 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
7347849 AGGATCCACT
*
7347859 ATGTGGGTGTTTAAGG
1 ATGTGGGTATTTAAGG
7347875 ATGTGGGTATTTAAG
1 ATGTGGGTATTTAAG
7347890 TAATAGGAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.23, C:0.00, G:0.39, T:0.39
Consensus pattern (16 bp):
ATGTGGGTATTTAAGG
Found at i:7349277 original size:24 final size:25
Alignment explanation
Indices: 7349245--7349291 Score: 60
Period size: 24 Copynumber: 1.9 Consensus size: 25
7349235 TTGAATCTTA
* **
7349245 GAAGAGAGTTTGAAGTTTTAAAGAT
1 GAAGAGAGTCTGAAAATTTAAAGAT
7349270 GAAG-GAGTCTGAAAATTTAAAG
1 GAAGAGAGTCTGAAAATTTAAAG
7349292 CAGTACAATG
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 15 0.79
25 4 0.21
ACGTcount: A:0.43, C:0.02, G:0.28, T:0.28
Consensus pattern (25 bp):
GAAGAGAGTCTGAAAATTTAAAGAT
Found at i:7361571 original size:246 final size:246
Alignment explanation
Indices: 7361137--7362120 Score: 1923
Period size: 246 Copynumber: 4.0 Consensus size: 246
7361127 CTAAGAAAAT
* * * *
7361137 TATGAAATCTTTTATTAATCTTCATGATCTATTTGGGTAAATTATTAGGCTTTGTTTATTTCATG
1 TATGAAATCTTTCATTAATCTTCATGATCTATTTAGGTAAATTATTGGGCTTTGTTTATTTCACG
7361202 TTCTTAAGATTTATTGATGATTATTAAATGGAGGTTAAAAGCTGAAAATAAGGATTTGACTTTCT
66 TTCTTAAGATTTATTGATGATTATTAAATGGAGGTTAAAAGCTGAAAATAAGGATTTGACTTTCT
7361267 AAAGATTGAAGTAGAAATTATGTTTTTGGAAGAGATGCTATGATATATAATAGTGAATAAAATAG
131 AAAGATTGAAGTAGAAATTATGTTTTTGGAAGAGATGCTATGATATATAATAGTGAATAAAATAG
7361332 AATTATGTATTAATGGATAGATTATTGCTATGATTATTATATATCGTTGGA
196 AATTATGTATTAATGGATAGATTATTGCTATGATTATTATATATCGTTGGA
7361383 TATGAAATCTTTCATTAATCTTCATGATCTATTTAGGTAAATTATTGGGCTTTGTTTATTTCACG
1 TATGAAATCTTTCATTAATCTTCATGATCTATTTAGGTAAATTATTGGGCTTTGTTTATTTCACG
7361448 TTCTTAAGATTTATTGATGATTATTAAATGGAGGTTAAAAGCTGAAAATAAGGATTTGACTTTCT
66 TTCTTAAGATTTATTGATGATTATTAAATGGAGGTTAAAAGCTGAAAATAAGGATTTGACTTTCT
7361513 AAAGATTGAAGTAGAAATTATGTTTTTGGAAGAGATGCTATGATATATAATAGTGAATAAAATAG
131 AAAGATTGAAGTAGAAATTATGTTTTTGGAAGAGATGCTATGATATATAATAGTGAATAAAATAG
7361578 AATTATGTATTAATGGATAGATTATTGCTATGATTATTATATATCGTTGGA
196 AATTATGTATTAATGGATAGATTATTGCTATGATTATTATATATCGTTGGA
7361629 TATGAAATCTTTCATTAATCTTCATGATCTATTTAGGTAAATTATTGGGCTTTGTTTATTTCACG
1 TATGAAATCTTTCATTAATCTTCATGATCTATTTAGGTAAATTATTGGGCTTTGTTTATTTCACG
7361694 TTCTTAAGATTTATTGATGATTATTAAATGGAGGTTAAAAGCTGAAAATAAGGATTTGACTTTCT
66 TTCTTAAGATTTATTGATGATTATTAAATGGAGGTTAAAAGCTGAAAATAAGGATTTGACTTTCT
7361759 AAAGATTGAAGTAGAAATTATGTTTTTGGAAGAGATGCTATGATATATAATAGTGAATAAAATAG
131 AAAGATTGAAGTAGAAATTATGTTTTTGGAAGAGATGCTATGATATATAATAGTGAATAAAATAG
7361824 AATTATGTATTAATGGATAGATTATTGCTATGATTATTATATATCGTTGGA
196 AATTATGTATTAATGGATAGATTATTGCTATGATTATTATATATCGTTGGA
7361875 TATGAAATCTTTCATTAATCTTCATGATCTATTTAGGTAAATTATTGGGCTTTGTTTATTTCACG
1 TATGAAATCTTTCATTAATCTTCATGATCTATTTAGGTAAATTATTGGGCTTTGTTTATTTCACG
*
7361940 TTCTTAAGATTTATTGATGATTATTAAATTGAGGTTAAAAGCTGAAAATAAGGATTTGACTTTCT
66 TTCTTAAGATTTATTGATGATTATTAAATGGAGGTTAAAAGCTGAAAATAAGGATTTGACTTTCT
7362005 AAAGATTGAAGTAGAAATTATGTTTTTGGAAGAGATGCTATGATATATAATAGTGAATAAAATAG
131 AAAGATTGAAGTAGAAATTATGTTTTTGGAAGAGATGCTATGATATATAATAGTGAATAAAATAG
7362070 AATTATGTATTAATGGATAGATTATTGCTATGATTATTATATATCGTTGGA
196 AATTATGTATTAATGGATAGATTATTGCTATGATTATTATATATCGTTGGA
7362121 AATCATATTG
Statistics
Matches: 733, Mismatches: 5, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
246 733 1.00
ACGTcount: A:0.35, C:0.06, G:0.18, T:0.41
Consensus pattern (246 bp):
TATGAAATCTTTCATTAATCTTCATGATCTATTTAGGTAAATTATTGGGCTTTGTTTATTTCACG
TTCTTAAGATTTATTGATGATTATTAAATGGAGGTTAAAAGCTGAAAATAAGGATTTGACTTTCT
AAAGATTGAAGTAGAAATTATGTTTTTGGAAGAGATGCTATGATATATAATAGTGAATAAAATAG
AATTATGTATTAATGGATAGATTATTGCTATGATTATTATATATCGTTGGA
Found at i:7363209 original size:16 final size:16
Alignment explanation
Indices: 7363184--7363214 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
7363174 TAAATGAATT
*
7363184 ATAATTATTTATGATA
1 ATAATGATTTATGATA
7363200 ATAATGATTTATGAT
1 ATAATGATTTATGAT
7363215 GATTTTAATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.10, T:0.48
Consensus pattern (16 bp):
ATAATGATTTATGATA
Found at i:7363703 original size:27 final size:28
Alignment explanation
Indices: 7363665--7363718 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 28
7363655 GATTAAAGAT
*
7363665 ATTTTGGAAATGTT-TGACATAATGATG
1 ATTTTAGAAATGTTATGACATAATGATG
*
7363692 ATTTTAGAAATGTTATGACATTATGAT
1 ATTTTAGAAATGTTATGACATAATGAT
7363719 TTGACGAATA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
27 13 0.54
28 11 0.46
ACGTcount: A:0.35, C:0.04, G:0.19, T:0.43
Consensus pattern (28 bp):
ATTTTAGAAATGTTATGACATAATGATG
Found at i:7363997 original size:349 final size:350
Alignment explanation
Indices: 7363321--7364015 Score: 1133
Period size: 349 Copynumber: 2.0 Consensus size: 350
7363311 TATGATCTAC
* *
7363321 GAAATGTTTGATATAATGATGATTTTAAAAAATATTTTGACATTATGATTTGACAAATATTTTAA
1 GAAATGTTTGACATAATGATGATTTTAAAAAATATTATGACATTATGATTTGACAAATATTTTAA
* * *
7363386 ATGATCTATATAATATGTATGAAAATGATGCTTGATCCGGTAAGGTGTGTGAGCCTATATTTGTT
66 ATGATCTATATAATATGTATGAAAATGAAGCTTGATCCAGTAAGGTGTGTGAGCCTATACTTGTT
* * *
7363451 AAATTGTGGTTTGCTCATTTTCCTTTTACTTTTTCTTTATAGATGAGTAAGTGATAAGTTTGCTT
131 AAACTATGGTTTGCTCATTTCCCTTTTACTTTTTCTTTATAGATGAGTAAGTGATAAGTTTGCTT
* * **
7363516 AATTTTGTGAAAAGCTAGAAGATTAAATGAGAAAGATTACTTAGTTGTCAGAGACAATATTGGCC
196 AACTTTGTGAAAAGCTAGAAGATCAAATGAGAAAGATTACTTAGTCATCAGAGACAATATTGGCC
* * *
7363581 AATGAGATCTTACGAAATGGTTTTGTATTTTTATATAGTTTGTATTTGGATATATAGAGATGTAT
261 AATGAGATCTTACAAAACGGTTTTGTATTTTTATATAGTTTGTATTTGAATATATAGAGATGTAT
7363646 CATTAGTTAGATTAAAGATATTTTG
326 CATTAGTTAGATTAAAGATATTTTG
* * * *
7363671 GAAATGTTTGACATAATGATGATTTT-AGAAATGTTATGACATTATGATTTGACGAATATTTTGA
1 GAAATGTTTGACATAATGATGATTTTAAAAAATATTATGACATTATGATTTGACAAATATTTTAA
*
7363735 ATGATCTATATAATATGTATGAAAATGAAGCTTGATCCAGTAAGGTGTGTGAGCTTATACTTGTT
66 ATGATCTATATAATATGTATGAAAATGAAGCTTGATCCAGTAAGGTGTGTGAGCCTATACTTGTT
*
7363800 GAACTATGGTTTGCTCATTTCCCTTTTACTTTTTCTTTATAGATGAGTAAGTGATAAGTTTGCTT
131 AAACTATGGTTTGCTCATTTCCCTTTTACTTTTTCTTTATAGATGAGTAAGTGATAAGTTTGCTT
* * *
7363865 AGCTTTGTGGAAAA-CTAGAAGATCAAATGAGAAAGATTACTTAGTCATTAGAGACAATGTTGGC
196 AACTTTGT-GAAAAGCTAGAAGATCAAATGAGAAAGATTACTTAGTCATCAGAGACAATATTGGC
*
7363929 CAATGAGATCTTACAAAACGGTTTTGTATTTTTATATGGTTTGTATTTGAATATATAGAGATGTA
260 CAATGAGATCTTACAAAACGGTTTTGTATTTTTATATAGTTTGTATTTGAATATATAGAGATGTA
*
7363994 TCATTAGTTAGATTAAATATAT
325 TCATTAGTTAGATTAAAGATAT
7364016 GAATTTTACT
Statistics
Matches: 318, Mismatches: 26, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
349 288 0.91
350 30 0.09
ACGTcount: A:0.33, C:0.08, G:0.19, T:0.41
Consensus pattern (350 bp):
GAAATGTTTGACATAATGATGATTTTAAAAAATATTATGACATTATGATTTGACAAATATTTTAA
ATGATCTATATAATATGTATGAAAATGAAGCTTGATCCAGTAAGGTGTGTGAGCCTATACTTGTT
AAACTATGGTTTGCTCATTTCCCTTTTACTTTTTCTTTATAGATGAGTAAGTGATAAGTTTGCTT
AACTTTGTGAAAAGCTAGAAGATCAAATGAGAAAGATTACTTAGTCATCAGAGACAATATTGGCC
AATGAGATCTTACAAAACGGTTTTGTATTTTTATATAGTTTGTATTTGAATATATAGAGATGTAT
CATTAGTTAGATTAAAGATATTTTG
Found at i:7371329 original size:23 final size:24
Alignment explanation
Indices: 7371276--7371330 Score: 69
Period size: 23 Copynumber: 2.4 Consensus size: 24
7371266 TTATTTGATA
*
7371276 AAAATTAATGAGTAAATAAAAAAT
1 AAAATTATTGAGTAAATAAAAAAT
* *
7371300 -AACTTATTGA-TCAATAAAAAAT
1 AAAATTATTGAGTAAATAAAAAAT
7371322 AAAATTATT
1 AAAATTATT
7371331 TTTTAAAAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
22 11 0.42
23 15 0.58
ACGTcount: A:0.60, C:0.04, G:0.05, T:0.31
Consensus pattern (24 bp):
AAAATTATTGAGTAAATAAAAAAT
Found at i:7371445 original size:18 final size:18
Alignment explanation
Indices: 7371424--7371744 Score: 144
Period size: 18 Copynumber: 17.0 Consensus size: 18
7371414 AGTATAATTT
*
7371424 TATTTATAAATAATATTA
1 TATTTATAAATAATATAA
*
7371442 TATTAATAAATAA-ATAA
1 TATTTATAAATAATATAA
*
7371459 TATTATATGAATAA-ATAA
1 TATT-TATAAATAATATAA
*
7371477 TATATTATTAATAA-ATAA
1 TAT-TTATAAATAATATAA
*
7371495 TATTAATAAATAATATAA
1 TATTTATAAATAATATAA
* *
7371513 TAATATATAAATAATATTA
1 T-ATTTATAAATAATATAA
* *
7371532 TATTAATAAATAATATAT
1 TATTTATAAATAATATAA
*
7371550 TA-TTA-AATATTATTATAAA
1 TATTTATAA-A-TAATAT-AA
7371569 TAAGTATTAT-AATAATATATTAA
1 T-A-T-TTATAAAT-A-ATA-TAA
* *
7371592 TATTAATAAATAATATAC
1 TATTTATAAATAATATAA
7371610 TATTAATATAATATAATAAATAA
1 TATT--TATAA-ATAAT--ATAA
* * *
7371633 CATTAAGAAATAATATTATAA
1 TATTTATAAAT-A-A-TATAA
*
7371654 TATATTAATAAATGAA-ATCA
1 TAT-TT-ATAAAT-AATATAA
*
7371674 TATTAATAAATAA-ATAA
1 TATTTATAAATAATATAA
*
7371691 TATTATATTAATAA-ATAA
1 TATT-TATAAATAATATAA
*
7371709 TA--TACT-ATTAATATAA
1 TATTTA-TAAATAATATAA
7371725 TATATTAATAAATAATATAA
1 TAT-TT-ATAAATAATATAA
7371745 AGAATAATAA
Statistics
Matches: 233, Mismatches: 36, Indels: 66
0.70 0.11 0.20
Matches are distributed among these distances:
15 6 0.03
16 9 0.04
17 27 0.12
18 91 0.39
19 24 0.10
20 27 0.12
21 20 0.09
22 6 0.03
23 22 0.09
24 1 0.00
ACGTcount: A:0.57, C:0.01, G:0.01, T:0.41
Consensus pattern (18 bp):
TATTTATAAATAATATAA
Found at i:7371529 original size:68 final size:67
Alignment explanation
Indices: 7371424--7371743 Score: 276
Period size: 68 Copynumber: 4.8 Consensus size: 67
7371414 AGTATAATTT
* * *
7371424 TATTTATAAATAATATTATATTAATAAATAAATAATATTATATGAATAAATAATATATTATTAAT
1 TATTAATAAATAATA-TA-A-TAATATATAAAT-ATATTATATTAATAAATAATATATTATTAAT
7371489 AAATAA
62 AAATAA
7371495 TATTAATAAATAATATAATAATATATAAATAATATTATATTAATAAATAATATATTA-T--TAAA
1 TATTAATAAATAATATAATAATATATAAAT-ATATTATATTAATAAATAATATATTATTAATAAA
*
7371557 TAT
65 TAA
*
7371560 TATT-ATAAATAAGTAT--T-ATA-AT-AATATATTAATATTAATAAATAATATACTATTAAT--
1 TATTAATAAATAA-TATAATAATATATAAATATATT-ATATTAATAAATAATATATTATTAATAA
7371617 ATAA
64 ATAA
* * * * *
7371621 TA-TAATAAATAACATTAAGAA-ATA-ATATTATAATATATTAATAAATGAAATCATATTAATAA
1 TATTAATAAATAATA-TAATAATATATA-AATATATTATATTAATAAAT--AAT-ATATT-ATTA
7371683 ATAAATAA
60 ATAAATAA
* * *
7371691 TATTATATTAATAA-ATAAT-ATACTATTAATATAATATATTAATAAATAATATA
1 TATTA-ATAAATAATATAATAATA-TATAAATATATTATATTAATAAATAATATA
7371744 AAGAATAATA
Statistics
Matches: 209, Mismatches: 16, Indels: 51
0.76 0.06 0.18
Matches are distributed among these distances:
59 5 0.02
60 25 0.12
61 17 0.08
62 3 0.01
63 3 0.01
64 22 0.11
65 19 0.09
66 3 0.01
67 5 0.02
68 45 0.22
69 5 0.02
70 12 0.06
71 38 0.18
72 7 0.03
ACGTcount: A:0.57, C:0.01, G:0.01, T:0.41
Consensus pattern (67 bp):
TATTAATAAATAATATAATAATATATAAATATATTATATTAATAAATAATATATTATTAATAAAT
AA
Found at i:7371592 original size:104 final size:105
Alignment explanation
Indices: 7371429--7371757 Score: 279
Period size: 104 Copynumber: 3.1 Consensus size: 105
7371419 AATTTTATTT
* * *
7371429 ATAA-ATAATATTATATTAATAAAT-AAATAATATTATATGAATAAATAAT-ATATTATTAATAA
1 ATAATATAATAATATATTAATAAATGAAAT-ATA-TAAATAAATAAATAATAATA-TATTAATAA
*
7371491 ATAATATTAATAAATAATATAATAATATATAAATAATATT-A-TA
63 ATAATA-TAATAAATAATATAAT-ATATATAAATAATATTAAGAA
* * *
7371534 TTAATA-AATAATATATTATTAAAT--ATTATTATAAATAAGTATTATAATAATATATTAATATT
1 ATAATATAATAATATATTAATAAATGAAATA-TATAAATAA--A-TA-AATAATA-A-T-ATATT
* * *
7371596 AATAAATAATATACT-ATTAATATAATATA-ATAAATAACATTAAGAA
58 AATAAATAATATAATAAATAATATAATATATATAAATAATATTAAGAA
* * *
7371642 ATAATATTATAATATATTAATAAATGAAATCATATTAATAAATAAATAATATTATATTAATAAAT
1 ATAATATAATAATATATTAATAAATGAAAT-ATATAAATAAATAAATAATAATATATTAATAAAT
* * *
7371707 AATATACT-ATTAATATAATATATTAATAAATAATATAAAG-A
65 AATATAATAAATAATATAATATA-T-ATAAATAATATTAAGAA
7371748 ATAATA-AATA
1 ATAATATAATA
7371758 GTTTTATTTT
Statistics
Matches: 186, Mismatches: 19, Indels: 38
0.77 0.08 0.16
Matches are distributed among these distances:
103 6 0.03
104 38 0.20
105 24 0.13
106 21 0.11
107 30 0.16
108 18 0.10
109 21 0.11
110 16 0.09
111 11 0.06
112 1 0.01
ACGTcount: A:0.58, C:0.01, G:0.02, T:0.40
Consensus pattern (105 bp):
ATAATATAATAATATATTAATAAATGAAATATATAAATAAATAAATAATAATATATTAATAAATA
ATATAATAAATAATATAATATATATAAATAATATTAAGAA
Found at i:7371863 original size:26 final size:25
Alignment explanation
Indices: 7371834--7371890 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 25
7371824 ATTTTTAATA
7371834 TTAATAATAAATAATTTCAATATATT
1 TTAATAATAAATAATTTCAA-ATATT
**
7371860 TTAATAATAAATAATTTTTAATATT
1 TTAATAATAAATAATTTCAAATATT
7371885 TTAATA
1 TTAATA
7371891 GTTATATTAA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
25 11 0.38
26 18 0.62
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (25 bp):
TTAATAATAAATAATTTCAAATATT
Found at i:7371889 original size:22 final size:22
Alignment explanation
Indices: 7371815--7371890 Score: 62
Period size: 26 Copynumber: 3.2 Consensus size: 22
7371805 ATATTATTAA
* *
7371815 AATATAATTATTTTTAATATTAAT
1 AATA-AATAATTTTTAATATT-TT
**
7371839 AATAAATAATTTCAATATATTTTAAT
1 AATAAATAATTTTTA-ATA-TTT--T
7371865 AATAAATAATTTTTAATATTTT
1 AATAAATAATTTTTAATATTTT
7371887 AATA
1 AATA
7371891 GTTATATTAA
Statistics
Matches: 42, Mismatches: 6, Indels: 10
0.72 0.10 0.17
Matches are distributed among these distances:
22 5 0.12
23 8 0.19
24 10 0.24
25 5 0.12
26 14 0.33
ACGTcount: A:0.49, C:0.01, G:0.00, T:0.50
Consensus pattern (22 bp):
AATAAATAATTTTTAATATTTT
Found at i:7372732 original size:32 final size:32
Alignment explanation
Indices: 7372670--7372750 Score: 85
Period size: 33 Copynumber: 2.5 Consensus size: 32
7372660 AATAATTATT
7372670 ATTTTTTATTTTTAATATTTTATATATAATATA
1 ATTTTTTATTTTTAATATTTTATATATAATA-A
* * *
7372703 ATTTTTTATTTTT-TTATTATTA-ATTTAATAG
1 ATTTTTTATTTTTAATATT-TTATATATAATAA
*
7372734 ATTTTTTAATTTCTAAT
1 ATTTTTT-ATTTTTAAT
7372751 TCAAATATGT
Statistics
Matches: 40, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
31 7 0.17
32 16 0.40
33 17 0.43
ACGTcount: A:0.32, C:0.01, G:0.01, T:0.65
Consensus pattern (32 bp):
ATTTTTTATTTTTAATATTTTATATATAATAA
Found at i:7373015 original size:17 final size:17
Alignment explanation
Indices: 7372989--7373036 Score: 53
Period size: 17 Copynumber: 2.8 Consensus size: 17
7372979 TAATAACCTT
*
7372989 TAATTCTTAAAAATTAA
1 TAATTATTAAAAATTAA
*
7373006 TAATTATTAATAAAATAA
1 TAATTATTAA-AAATTAA
*
7373024 -AATAATTAAAAAT
1 TAATTATTAAAAAT
7373037 CAAAAGTGAT
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
16 3 0.12
17 17 0.65
18 6 0.23
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (17 bp):
TAATTATTAAAAATTAA
Found at i:7379003 original size:2 final size:2
Alignment explanation
Indices: 7378996--7379023 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
7378986 GCACATGATT
7378996 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7379024 GATCATAATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:7382750 original size:14 final size:14
Alignment explanation
Indices: 7382731--7382757 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
7382721 TTTTGTTATT
7382731 TTTATTATTTTTAA
1 TTTATTATTTTTAA
7382745 TTTATTATTTTTA
1 TTTATTATTTTTA
7382758 TTTTCTAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (14 bp):
TTTATTATTTTTAA
Found at i:7382758 original size:20 final size:21
Alignment explanation
Indices: 7382726--7382767 Score: 61
Period size: 20 Copynumber: 2.0 Consensus size: 21
7382716 AATCTTTTTG
7382726 TTATTTTTATTATTTT-TAAT
1 TTATTTTTATTATTTTCTAAT
7382746 TTATTATTT-TTATTTTCTAAT
1 TTATT-TTTATTATTTTCTAAT
7382767 T
1 T
7382768 CAAATGTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 12 0.60
21 8 0.40
ACGTcount: A:0.24, C:0.02, G:0.00, T:0.74
Consensus pattern (21 bp):
TTATTTTTATTATTTTCTAAT
Found at i:7382832 original size:19 final size:20
Alignment explanation
Indices: 7382795--7382832 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
7382785 TTTATATTAT
7382795 AAAAATTAGTTTATCTAATA
1 AAAAATTAGTTTATCTAATA
7382815 AAAAATGTA-TTTAT-TAAT
1 AAAAAT-TAGTTTATCTAAT
7382833 TTAAGAATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 4 0.24
20 11 0.65
21 2 0.12
ACGTcount: A:0.50, C:0.03, G:0.05, T:0.42
Consensus pattern (20 bp):
AAAAATTAGTTTATCTAATA
Found at i:7387190 original size:87 final size:87
Alignment explanation
Indices: 7386974--7387394 Score: 381
Period size: 87 Copynumber: 4.8 Consensus size: 87
7386964 CCGCCACCAT
* * * * * * * *
7386974 CACCCAAGAAGCCTTACAAGTACCACTCTCCTCCCCCACCAACTCCTGTTTACAAGTATAAGTCT
1 CACCCAAGCATCCTTACAAGTACAAGTCTCCTCCCCCACCACCCCCAGTTTACAAGTACAAGTCT
* * *
7387039 CCACCACCTCCTCCACCAGTGCAC
66 CCCCCACCACCACCACCA-T-CAC
* * * * * *
7387063 TATCCTCCA-CCTCCTTACAAGTACAAGTCTCCTCCTCCTCCTCCCCCAGTTTACAAGTACAAGT
1 CA-CC-CAAGCATCCTTACAAGTACAAGTCTCCTCCCCCACCACCCCCAGTTTACAAGTACAAGT
7387127 CTCCCCCACCACCACCACCATCAC
64 CTCCCCCACCACCACCACCATCAC
* * *
7387151 CACCCAAGCATCCATACAAGTACAAGTCTCCTCCCCCTCC-CCCTCCCGTTTACAAGTACAAGTC
1 CACCCAAGCATCCTTACAAGTACAAGTCTCCTCCCCCACCACCC-CCAGTTTACAAGTACAAGTC
7387215 -CCCACCACCACCACCACCATCAC
65 TCCC-CCACCACCACCACCATCAC
* * * * * *
7387238 CACCCAAGCACCCCTACAAGTACAAGTCTCCACCCCCACCACCACCAGTTTACAAATATAAGTCT
1 CACCCAAGCATCCTTACAAGTACAAGTCTCCTCCCCCACCACCCCCAGTTTACAAGTACAAGTCT
* * *
7387303 CCCCCACCTCCAATGCACTAT--C
66 CCCCCACCACC-A-CCACCATCAC
** * * * * *
7387325 C-CCCACCCA--CTTACAAGTACAAATCACCTCCACCACCACCCCCAGTTTACAAATATAAGTCT
1 CACCCAAGCATCCTTACAAGTACAAGTCTCCTCCCCCACCACCCCCAGTTTACAAGTACAAGTCT
*
7387387 CCACCACC
66 CCCCCACC
7387395 TCCTTACAAG
Statistics
Matches: 280, Mismatches: 43, Indels: 23
0.81 0.12 0.07
Matches are distributed among these distances:
84 54 0.19
86 14 0.05
87 131 0.47
88 10 0.04
89 7 0.03
90 62 0.22
91 2 0.01
ACGTcount: A:0.28, C:0.46, G:0.07, T:0.19
Consensus pattern (87 bp):
CACCCAAGCATCCTTACAAGTACAAGTCTCCTCCCCCACCACCCCCAGTTTACAAGTACAAGTCT
CCCCCACCACCACCACCATCAC
Found at i:7387421 original size:60 final size:63
Alignment explanation
Indices: 7387334--7387454 Score: 149
Period size: 60 Copynumber: 2.0 Consensus size: 63
7387324 CCCCCACCCA
* *
7387334 CTTACAAGTACAAATCACCTCCACCACCACCCCCAGTTTACAAATATAAGTCTCCACCACCTC
1 CTTACAAGTACAAATCACCTCCACCACCACCCCCAGTCTACAAATACAAGTCTCCACCACCTC
* * * * * *
7387397 CTTACAAGTATAAGTC-CC-CC-CCACCACCTCCTGTCTATAAATACAAGTCTCCTCCACC
1 CTTACAAGTACAAATCACCTCCACCACCACCCCCAGTCTACAAATACAAGTCTCCACCACC
7387455 ACCTCCTCCA
Statistics
Matches: 50, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
60 32 0.64
61 2 0.04
62 2 0.04
63 14 0.28
ACGTcount: A:0.31, C:0.41, G:0.06, T:0.22
Consensus pattern (63 bp):
CTTACAAGTACAAATCACCTCCACCACCACCCCCAGTCTACAAATACAAGTCTCCACCACCTC
Found at i:7387478 original size:36 final size:36
Alignment explanation
Indices: 7387336--7387934 Score: 469
Period size: 36 Copynumber: 16.7 Consensus size: 36
7387326 CCCACCCACT
* * * * *
7387336 TACAAGTACAAATCACCTCCACCACCACCCCCAGTT
1 TACAAGTACAAGTCTCCTCCACCACCTCCTCCAGTG
* *
7387372 TACAAATATAAG--T-CTCCACCA---CCTCC--T-
1 TACAAGTACAAGTCTCCTCCACCACCTCCTCCAGTG
* * * *
7387399 TACAAGTATAAGTC-CC-CC-CCACCACCTCCTGTC
1 TACAAGTACAAGTCTCCTCCACCACCTCCTCCAGTG
* *
7387432 TATAAATACAAGTCTCCTCCACCACCTCCTCCAGTG
1 TACAAGTACAAGTCTCCTCCACCACCTCCTCCAGTG
* * * *
7387468 TACAAGTACAAGTCCCCTCCTCCTCCTCCT-AAGGTG
1 TACAAGTACAAGTCTCCTCCACCACCTCCTCCA-GTG
*
7387504 CCATACAAGTACAAGTCTCCCCCACCACCTCCTCCAGTG
1 ---TACAAGTACAAGTCTCCTCCACCACCTCCTCCAGTG
* * * *
7387543 TACAAGTACAAGTCCCCTCCTCCTCCTCCT-AAGGTG
1 TACAAGTACAAGTCTCCTCCACCACCTCCTCCA-GTG
* *
7387579 CCATACAAGTACAAGTCTCCCCCACCACCTCCTCCAGTC
1 ---TACAAGTACAAGTCTCCTCCACCACCTCCTCCAGTG
* * *
7387618 TATAATTACAAGTCTCCTCCGCCACCTCCTCCAGTG
1 TACAAGTACAAGTCTCCTCCACCACCTCCTCCAGTG
* * * *
7387654 TACAAGTACAAGTCCCCTCCTCCTCCTCCT-AAGGTG
1 TACAAGTACAAGTCTCCTCCACCACCTCCTCCA-GTG
* *
7387690 CCATACAAGTACAAGTCTCCCCCACCACCTCCTCCAGTC
1 ---TACAAGTACAAGTCTCCTCCACCACCTCCTCCAGTG
* * *
7387729 TATAAATACAAGTCTCCTCCACCACCTCCTCCAGTT
1 TACAAGTACAAGTCTCCTCCACCACCTCCTCCAGTG
* * * *** *
7387765 TACAAGTACAAGTCCCCTCCTCCTCCTAAGGAGCCA-TA
1 TACAAGTACAAGTCTCCTCCACCACCT---CCTCCAGTG
* * *
7387803 TA-AA-TACAAGTCTCCCCCACCCCCTCCTCCAGTT
1 TACAAGTACAAGTCTCCTCCACCACCTCCTCCAGTG
*
7387837 TACAAGTACAAGTCTCCTCCACCACCTCCTCCAGTT
1 TACAAGTACAAGTCTCCTCCACCACCTCCTCCAGTG
* * *
7387873 TACAAGTACAAGTCTCCTCCCCCTCCTCCTCCAGTT
1 TACAAGTACAAGTCTCCTCCACCACCTCCTCCAGTG
* *
7387909 TACAAGTATAAATCTCCTCCACCACC
1 TACAAGTACAAGTCTCCTCCACCACC
7387935 ACCATCCCAT
Statistics
Matches: 450, Mismatches: 80, Indels: 66
0.76 0.13 0.11
Matches are distributed among these distances:
27 14 0.03
28 3 0.01
29 1 0.00
30 9 0.02
32 1 0.00
33 22 0.05
34 5 0.01
35 7 0.02
36 292 0.65
37 2 0.00
38 3 0.01
39 88 0.20
40 3 0.01
ACGTcount: A:0.26, C:0.42, G:0.09, T:0.23
Consensus pattern (36 bp):
TACAAGTACAAGTCTCCTCCACCACCTCCTCCAGTG
Found at i:7387479 original size:75 final size:73
Alignment explanation
Indices: 7387408--7387916 Score: 341
Period size: 75 Copynumber: 6.9 Consensus size: 73
7387398 TTACAAGTAT
*
7387408 AAGTCCCCCCCACCACCTCCT-GTCTATAAATACAAGTCTCCTCCACCACCTCCTCCAGTGTACA
1 AAGTCCCCCCCACCTCCTCCTAGTCTATAAATACAAGTCTCCTCCACCACCTCCTCCAGTGTACA
7387472 AGTAC---
66 AGTACAAG
* * * *
7387477 AAGTCCCCTCCTCCTCCTCCTAAGGTGCCATACAAGTACAAGTCTCCCCCACCACCTCCTCCAGT
1 AAGTCCCCCCCACCTCCTCCT-A-GT-CTATA-AA-TACAAGTCTCCTCCACCACCTCCTCCAGT
7387542 GTACAAGTAC---
61 GTACAAGTACAAG
* * * *
7387552 AAGTCCCCTCCTCCTCCTCCTAAGGTGCCATACAAGTACAAGTCTCCCCCACCACCTCCTCCAGT
1 AAGTCCCCCCCACCTCCTCCT-A-GT-CTATA-AA-TACAAGTCTCCTCCACCACCTCCTCCAGT
* * *
7387617 CTATAATTACAAG
61 GTACAAGTACAAG
** * * * * * * * *
7387630 -TCTCCTCCGCCACCTCCTCC-AGTGTACAAGTACAAGTCCCCTCCTCCTCCTCCT-AAGGTGCC
1 AAGTCC-CCCCCACCTCCTCCTAGTCTATAAATACAAGTCTCCTCCACCACCTCCTCCA-GTG--
7387692 ATACAAGTACAAG
62 -TACAAGTACAAG
** *
7387705 -TCTCCCCCACCACCTCCTCC-AGTCTATAAATACAAGTCTCCTCCACCACCTCCTCCAGTTTAC
1 AAGTCCCCC-CCACCTCCTCCTAGTCTATAAATACAAGTCTCCTCCACCACCTCCTCCAGTGTAC
7387768 AAGTAC---
65 AAGTACAAG
* * *** * * * *
7387774 AAGTCCCCTCCTCCTCCTAAGGAGCCATATAAATACAAGTCTCCCCCACCCCCTCCTCCAGTTTA
1 AAGTCCCCCCCACCTCCT-CCTAGTC-TATAAATACAAGTCTCCTCCACCACCTCCTCCAGTGTA
7387839 CAAGTACAAG
64 CAAGTACAAG
** * * * * * * *
7387849 -TCTCCTCCACCACCTCCTCC-AGTTTACAAGTACAAGTCTCCTCCCCCTCCTCCTCCAGTTTAC
1 AAGTCC-CCCCCACCTCCTCCTAGTCTATAAATACAAGTCTCCTCCACCACCTCCTCCAGTGTAC
7387912 AAGTA
65 AAGTA
7387917 TAAATCTCCT
Statistics
Matches: 361, Mismatches: 55, Indels: 45
0.78 0.12 0.10
Matches are distributed among these distances:
69 26 0.07
70 5 0.01
71 4 0.01
72 115 0.32
73 7 0.02
74 9 0.02
75 178 0.49
76 2 0.01
77 3 0.01
78 12 0.03
ACGTcount: A:0.25, C:0.42, G:0.10, T:0.23
Consensus pattern (73 bp):
AAGTCCCCCCCACCTCCTCCTAGTCTATAAATACAAGTCTCCTCCACCACCTCCTCCAGTGTACA
AGTACAAG
Found at i:7387628 original size:111 final size:111
Alignment explanation
Indices: 7387513--7387902 Score: 633
Period size: 111 Copynumber: 3.5 Consensus size: 111
7387503 GCCATACAAG
*
7387513 TACAAGTCTCCCCCACCACCTCCTCCAGTGTACAAGTACAAGTCCCCTCCTCCTCCTCCTAAGGT
1 TACAAGTCTCCTCCACCACCTCCTCCAGTGTACAAGTACAAGTCCCCTCCTCCTCCTCCTAAGGT
*
7387578 GCCATACAAGTACAAGTCTCCCCCACCACCTCCTCCAGTCTATAAT
66 GCCATACAAGTACAAGTCTCCCCCACCACCTCCTCCAGTCTATAAA
*
7387624 TACAAGTCTCCTCCGCCACCTCCTCCAGTGTACAAGTACAAGTCCCCTCCTCCTCCTCCTAAGGT
1 TACAAGTCTCCTCCACCACCTCCTCCAGTGTACAAGTACAAGTCCCCTCCTCCTCCTCCTAAGGT
7387689 GCCATACAAGTACAAGTCTCCCCCACCACCTCCTCCAGTCTATAAA
66 GCCATACAAGTACAAGTCTCCCCCACCACCTCCTCCAGTCTATAAA
* *
7387735 TACAAGTCTCCTCCACCACCTCCTCCAGTTTACAAGTACAAGT--CC-CCTCCTCCTCCTAAGGA
1 TACAAGTCTCCTCCACCACCTCCTCCAGTGTACAAGTACAAGTCCCCTCCTCCTCCTCCTAAGGT
* * * * * *
7387797 GCCATATAAATACAAGTCTCCCCCACCCCCTCCTCCAGTTTACAAG
66 GCCATACAAGTACAAGTCTCCCCCACCACCTCCTCCAGTCTATAAA
* * *
7387843 TACAAGTCTCCTCCACCACCTCCTCCAGTTTACAAGTACAAGTCTCCTCCCCCTCCTCCT
1 TACAAGTCTCCTCCACCACCTCCTCCAGTGTACAAGTACAAGTCCCCTCCTCCTCCTCCT
7387903 CCAGTTTACA
Statistics
Matches: 263, Mismatches: 13, Indels: 6
0.93 0.05 0.02
Matches are distributed among these distances:
108 99 0.38
109 2 0.01
110 2 0.01
111 160 0.61
ACGTcount: A:0.24, C:0.43, G:0.09, T:0.23
Consensus pattern (111 bp):
TACAAGTCTCCTCCACCACCTCCTCCAGTGTACAAGTACAAGTCCCCTCCTCCTCCTCCTAAGGT
GCCATACAAGTACAAGTCTCCCCCACCACCTCCTCCAGTCTATAAA
Found at i:7388985 original size:13 final size:13
Alignment explanation
Indices: 7388967--7388996 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
7388957 TATTTCAATA
*
7388967 AAAATATAATCTC
1 AAAATAAAATCTC
7388980 AAAATAAAATCTC
1 AAAATAAAATCTC
7388993 AAAA
1 AAAA
7388997 CGTATTCTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.63, C:0.13, G:0.00, T:0.23
Consensus pattern (13 bp):
AAAATAAAATCTC
Done.