Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 350 of 402
Found at i:32093866 original size:26 final size:26
Alignment explanation
Indices: 32093837--32093888 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
32093827 TTGATCCGAT
32093837 CTTAGAC-TGAGAATGAACTCCGTATG
1 CTTAGACATG-GAATGAACTCCGTATG
32093863 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
32093889 GCTAAGCCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:32094129 original size:513 final size:499
Alignment explanation
Indices: 32093162--32094366 Score: 1381
Period size: 513 Copynumber: 2.4 Consensus size: 499
32093152 CCTCGGTTCG
* * * *
32093162 GCTGGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCTTACGGGC
1 GCTGGGGCTTAGACATGGAATGAACTCTCTATGCCTAAGCCAACCCATGAAATG-GCGTGCGGGC
* * * * * ***
32093227 ACTCAGCCAGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGATTCGGTCCCCCCTGCGTGCTAC
65 ATTCAGCC-GGCTGAGAAGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTAC
32093292 CGAT-C-CTGCTGTCACAACACTCGATCCGATCCGATCTTAGACTGGAATGAACTCCGTATGCTT
129 CGATCCTCTGCTGTCACAACACTCGATCCGATCCGATCTTAGACTGGAATGAACTCCGTATGCTT
* * *
32093355 AGACAAGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAACCGG
194 AGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAACCGA
* * * *
32093420 CCGATGAGGCAGAATGCGCAAGCCGAGGATCGACCCAGTCCCCCTGCGTGCTGTCGATCCTTGTG
259 CCGAAGAGGCAGAATGCGCAACCCGAGGATCGACCCAGTCCCCCTGCGTGCTATCGATCCTTGTA
* * *
32093485 TCGCAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGACTAAGTCAACCCAC
324 CCACAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCCATATGACTAAGTCAACCCAC
* ** * *
32093550 AAAACGAGCGGGCGGGAGCTGAGCCGATCGTAAAGGTAAAATGCGCAAGTCAGGGATCAGCCCGG
389 AAAACAAGCGGAAGGGAGCTGAGCCGATCGGAAAGGCAAAATGCGCAAGTCAGGGATCAGCCCGG
** * *
32093615 TCACCCTCTGTGTACTATCAGTCTCGCTGCCACAACCCTCGATCCA
454 TCACCCTCTAAGTACTATCAGTCCCACTGCCACAACCCTCGATCCA
*
32093661 GCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATAGGCGTGCGGGC
1 GCTGGGGCTTAGACATGGAATGAACTCTCTATGCCTAAGCCAACCCATGAAAT-GGCGTGCGGGC
* * * *
32093726 ATTCAGCCGGCTAGAGAAGCAGAATGTGCAAGTCGGGGATCGGCCCGGT-CCCCCTGTGTGCTGC
65 ATTCAGCCGGCT-GAGAAGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTAC
* **
32093790 CGATCCTGCTGCTGGTCCTGCTACCGCAACGCTCGATTTGATCCGATCTTAGACTGAGAATGAAC
129 CGATCCT-CTGCT-G---T-C-A---CAACACTCGATCCGATCCGATCTTAGACTG-GAATGAAC
* * * **
32093855 TCCGTATGCTTAGACATGGAATGAACTCCGTATGGCTAAGCCAACCCACGAAACGAGTGTGTGGG
183 TCCGTATGCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGG
** * * * * *
32093920 CGCTCAGTCGATCGAAGAGGTAGAATGCGCAACCCGAGGATTGGCCC-GATCCCTCCCTGTGTGC
248 CGCTCAACCGACCGAAGAGGCAGAATGCGCAACCCGAGGATCGACCCAG-T-CC-CCCTGCGTGC
* *
32093984 TATCGATCC-TGCTACCACAACCCTCGATCTGAT-TCGATCTTAGACTGGGAGTGAACTCCATAT
310 TATCGATCCTTG-TACCACAACCCTCGATCCGATCT-GATCTTAGACTGGGAATGAACTCCATAT
* * * *
32094047 GACTAAGTCAACCCACGAAACAAGCGTAAGGGCA-CTGAGCCGATCGGAGAGGCATAATGCGCAA
373 GACTAAGTCAACCCACAAAACAAGCGGAAGGG-AGCTGAGCCGATCGGAAAGGCAAAATGCGCAA
* * * * * * *
32094111 GTCAGGGATC-GACCCGGTCCCCCTCTAAGTGCTGTCGGTCCCACTGCCACAGCCCTCGGTCCG
437 GTCAGGGATCAG-CCCGGTCACCCTCTAAGTACTATCAGTCCCACTGCCACAACCCTCGATCCA
* * * *
32094174 GTTGGGGCTTAGACATGGAATGAACTCTCTATGCCTAAGCTAACCCATGAAACGGATGTGCGGGC
1 GCTGGGGCTTAGACATGGAATGAACTCTCTATGCCTAAGCCAACCCATGAAATGG-CGTGCGGGC
* * * * *
32094239 ATTCAGTCGACCTGAGATGAAGAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCCTGCGTGCTAC
65 ATTCAGCCG-GCTGAGAAGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTAC
* * * * *
32094304 CGAT-C-CTACT-ACAGCAACCCTCTG-TCCGATCTGATCTTAGACTGGGAATGAACTTCGTATG
129 CGATCCTCTGCTGTCA-CAACACTC-GATCCGATCCGATCTTAGACT-GGAATGAACTCCGTATG
32094365 CT
191 CT
32094367 GAAGTCAACC
Statistics
Matches: 594, Mismatches: 85, Indels: 51
0.81 0.12 0.07
Matches are distributed among these distances:
498 19 0.03
499 95 0.16
500 1 0.00
501 5 0.01
502 42 0.07
503 2 0.00
504 1 0.00
505 2 0.00
506 1 0.00
507 1 0.00
510 28 0.05
511 109 0.18
512 8 0.01
513 260 0.44
514 20 0.03
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.20
Consensus pattern (499 bp):
GCTGGGGCTTAGACATGGAATGAACTCTCTATGCCTAAGCCAACCCATGAAATGGCGTGCGGGCA
TTCAGCCGGCTGAGAAGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTACCG
ATCCTCTGCTGTCACAACACTCGATCCGATCCGATCTTAGACTGGAATGAACTCCGTATGCTTAG
ACAAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAACCGACC
GAAGAGGCAGAATGCGCAACCCGAGGATCGACCCAGTCCCCCTGCGTGCTATCGATCCTTGTACC
ACAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCCATATGACTAAGTCAACCCACAA
AACAAGCGGAAGGGAGCTGAGCCGATCGGAAAGGCAAAATGCGCAAGTCAGGGATCAGCCCGGTC
ACCCTCTAAGTACTATCAGTCCCACTGCCACAACCCTCGATCCA
Found at i:32094187 original size:854 final size:848
Alignment explanation
Indices: 32092471--32094200 Score: 1813
Period size: 854 Copynumber: 2.0 Consensus size: 848
32092461 GGCTCAAAAT
* *
32092471 CTTAGACTGTGAATGAACTTCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCC
1 CTTAGACTG-GAATGAACTCCGTATGCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCC
* * * *
32092536 ACGAAACGAGCGTGCAGGCGCTCAGCCGACCGGAGAGGCAGAATGCGTAAGCCGAGGATCGATCC
65 ACGAAACGAGCGTACAGGCGCTCAACCGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCC
* *
32092601 AGTCCCCCCTGTATGCTGTCGATCCTACTGCTGCAACCATCGGTCCGATCCGATCTTAGACTGGG
130 AGTCCCCCCTGCATGCTGTCGATCCTACTGCTGCAACCATCGATCCGATCCGATCTTAGACTGGG
* ** * * * * * *
32092666 AATGAACTTCGTATGCATAAGTCAACCCATGAAATGAGCGTGCGGGCGCTGAGTCGGTTGAAGAG
195 AATGAACTCCGTATGCATAAGTCAACCCACAAAACGAGCGGGCGGGAGCTGAGCCGATCGAAGAG
* * ** * * * *
32092731 GCATAATGCGCTGGCAGGGGATTGGCCTGGTCCCCCTCTGTGTGCTACCGGTCCCACTACCACAA
260 GCAAAATGCGCAGGCAGGGGATCAGCCCGGTCACCCTCTGTGTACTACCAGTCCCACTACCACAA
* * * * *
32092796 CCCTCGGTCTAACTACAGCTTACACATGGAATTAACTCCCTATGAGTAAGCCAACCCACAAAATG
325 CCCTCGATCCAACTACAGCTTACACATGGAATGAACTCCCTATGACTAAGCCAACCCACAAAATA
* *
32092861 GGCGTGCGGGCACTCAACCGGCTGGAGAGGCAGAATGCACAAGCCGGGGATCAGCCCGGTCCCCC
390 GGCGTGCGGGCACTCAACCGGCTAGAGAAGCAGAATGCACAAGCCGGGGATCAGCCCGGTCCCCC
* * *
32092926 CTGCGTGCTGTCGATCCTACTAAAAAAACCCTCTGTCCGATCTGATCTTAGACTGGGAATGAACT
455 CTGCGTCCTGTCGATCCTACTAAAAAAACCCTCTGTCCGATCCGATCTTAGACTGAGAATGAACT
* * * *
32092991 CCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTCAGTCAAACCGCGAAACGAGCATGCGGGC
520 CCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAACCACGAAACGAGCATGCGGGC
* * * * * * *
32093056 GCTCAGCCGACCCGAGAGGCATAATACGTAAGCCGGGGATCAGCCTGGTCCCCCTCTGCGTGCTG
585 GCTCAGCCGACCCGAGAGGCAGAATACGCAACCCGAGGATCAGCCCGATCCCCCTCTGCGTGCTA
* * * * * *
32093121 TCAATCCCGCTGCCGGTCCTGTTGTCATAACCCTCGGTTCGGCTGGGGCTTAGACATGGAATGAA
650 TCAAT-CCGCTGCC-GTAC-----TCACAACCCTCGATTCGACTCGAGCTTAGACATGGAATGAA
** * ** * *
32093186 CTCTGTATGCCTAAGCCAACCCACGAAATGAGCTTACGGGCACTCAGCCAGCCGGAGAGGCAGAA
708 CTCCATATGACTAAGCCAACCCACGAAACAAGCGTAAGGGCACTCAGCCAGCCGGAGAGGCAGAA
** ** ** *
32093251 TGCGCAAGCCAGGGATCGATTCGGTCCCCCCTGCGTGCTACCGATCCTGCTGTCACAACACTCGA
773 TGCGCAAGCCAGGGATCGACCCGGTCCCCCCTAAGTGCTACCGATCCCACTGCCACAACACTCGA
*
32093316 TCCGATCCGAT
838 TCCGATCCGAG
*
32093327 CTTAGACTGGAATGAACTCCGTATGCTTAGACAAGGAATGAACTCTGTATGCCTAAGCCAACCCA
1 CTTAGACTGGAATGAACTCCGTATGCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCA
* * *
32093392 CGAAATGAGCGTACGGGCGCTCAACCGGCC-GATGAGGCAGAATGCGCAAGCCGAGGATCGACCC
66 CGAAACGAGCGTACAGGCGCTCAACCGACCGGA-GAGGCAGAATGCGCAAGCCGAGGATCGACCC
* ** * *
32093456 AGT-CCCCCTGCGTGCTGTCGATCCTTGTG-TCGCAACCCTCGATCCGATCTGATCTTAGACTGG
130 AGTCCCCCCTGCATGCTGTCGATCCTACTGCT-GCAACCATCGATCCGATCCGATCTTAGACTGG
32093519 GAATGAACTCCGTATG-ACTAAGTCAACCCACAAAACGAGCGGGCGGGAGCTGAGCCGATCGTAA
194 GAATGAACTCCGTATGCA-TAAGTCAACCCACAAAACGAGCGGGCGGGAGCTGAGCCGATCG-AA
* * * * * *
32093583 -AGGTAAAATGCGCAAGTCA-GGGATCAGCCCGGTCACCCTCTGTGTACTATCAGTCTCGCTGCC
257 GAGGCAAAATGCGC-AGGCAGGGGATCAGCCCGGTCACCCTCTGTGTACTACCAGTCCCACTACC
* *** * * **
32093646 ACAACCCTCGATCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGA
321 ACAACCCTCGATCCAACTACAGCTTACACATGGAATGAACTCCCTATGACTAAGCCAACCCACAA
* * ** * *
32093711 AATAGGCGTGCGGGCATTCAGCCGGCTAGAGAAGCAGAATGTGCAAGTCGGGGATCGGCCCGGTC
386 AATAGGCGTGCGGGCACTCAACCGGCTAGAGAAGCAGAATGCACAAGCCGGGGATCAGCCCGGTC
* * **** * **
32093776 CCCCTGTGTGCTGCCGATCCTGCTGCTGGTCCTGCTACCGCAACGCTC-GATTTGATCCGATCTT
451 CCCC------CTG-CG-TCCTG-T-C-GATCCTACTAAAAAAACCCTCTG-TCCGATCCGATCTT
* *
32093840 AGACTGAGAATGAACTCCGTATGCTTAGACAT-GGAATGAACTCCGTATGGCTAAGCCAACCCAC
504 AGACTGAGAATGAACTCCGTATGCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAAACCAC
** * * * * * **
32093904 GAAACGAGTGTGTGGGCGCTCAGTCGA-TCGAAGAGGTAGAATGCGCAACCCGAGGATTGGCCCG
568 GAAACGAGCATGCGGGCGCTCAGCCGACCCG-AGAGGCAGAATACGCAACCCGAGGATCAGCCCG
* * * *
32093968 ATCCCTCC-CTGTGTGCTATCGAT-C-CTG-C-TAC-CACAACCCTCGA-TCTGATTCGATCTTA
632 ATCCC-CCTCTGCGTGCTATCAATCCGCTGCCGTACTCACAACCCTCGATTC-GACTCGAGCTTA
* * *
32094026 GAC-TGGGAGTGAACTCCATATGACTAAGTCAACCCACGAAACAAGCGTAAGGGCACTGAGCC-G
695 GACAT-GGAATGAACTCCATATGACTAAGCCAACCCACGAAACAAGCGTAAGGGCACTCAGCCAG
* * * ** *
32094089 ATCGGAGAGGCATAATGCGCAAGTCAGGGATCGACCCGGTCCCCCTCTAAGTGCTGTCGGTCCCA
759 -CCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGGTCCCCC-CTAAGTGCTACCGATCCCA
* * * * ** *
32094154 CTGCCACAGCCCTCGGTCCGGTTGGGG
822 CTGCCACAACACTCGATCCGATCCGAG
32094181 CTTAGACATGGAATGAACTC
1 CTTAGAC-TGGAATGAACTC
32094201 TCTATGCCTA
Statistics
Matches: 713, Mismatches: 136, Indels: 51
0.79 0.15 0.06
Matches are distributed among these distances:
852 4 0.01
853 108 0.15
854 298 0.42
855 127 0.18
856 9 0.01
859 2 0.00
860 3 0.00
861 3 0.00
862 7 0.01
863 2 0.00
864 4 0.01
865 143 0.20
866 3 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (848 bp):
CTTAGACTGGAATGAACTCCGTATGCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCA
CGAAACGAGCGTACAGGCGCTCAACCGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCA
GTCCCCCCTGCATGCTGTCGATCCTACTGCTGCAACCATCGATCCGATCCGATCTTAGACTGGGA
ATGAACTCCGTATGCATAAGTCAACCCACAAAACGAGCGGGCGGGAGCTGAGCCGATCGAAGAGG
CAAAATGCGCAGGCAGGGGATCAGCCCGGTCACCCTCTGTGTACTACCAGTCCCACTACCACAAC
CCTCGATCCAACTACAGCTTACACATGGAATGAACTCCCTATGACTAAGCCAACCCACAAAATAG
GCGTGCGGGCACTCAACCGGCTAGAGAAGCAGAATGCACAAGCCGGGGATCAGCCCGGTCCCCCC
TGCGTCCTGTCGATCCTACTAAAAAAACCCTCTGTCCGATCCGATCTTAGACTGAGAATGAACTC
CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAACCACGAAACGAGCATGCGGGCG
CTCAGCCGACCCGAGAGGCAGAATACGCAACCCGAGGATCAGCCCGATCCCCCTCTGCGTGCTAT
CAATCCGCTGCCGTACTCACAACCCTCGATTCGACTCGAGCTTAGACATGGAATGAACTCCATAT
GACTAAGCCAACCCACGAAACAAGCGTAAGGGCACTCAGCCAGCCGGAGAGGCAGAATGCGCAAG
CCAGGGATCGACCCGGTCCCCCCTAAGTGCTACCGATCCCACTGCCACAACACTCGATCCGATCC
GAG
Found at i:32094239 original size:159 final size:158
Alignment explanation
Indices: 32094076--32094608 Score: 381
Period size: 158 Copynumber: 3.4 Consensus size: 158
32094066 ACAAGCGTAA
* * * *
32094076 GGGCACTGAGCCGATCGGAGAGGCATAATGCGCAAGTCAGGGATCGACCCGGTCCCCCTCTAAGT
1 GGGCACTGAGCCGACCGAAGAGGCAGAATGCGCAAG-CGGGGATCGACCCGGTCCCCCTCTAAGT
*
32094141 GCTGTCGGTCCCACTGCCACAGCCCTCGGTCCGGTTGGGGCTTAGACATGGAATGAACTCTCTAT
65 GCTGTCGGTCCCACTGCCACAGCCCTCAGTCCGGTTGGGGCTTAGACATGGAATGAACTCTCTAT
32094206 GCCTAAGCTAACCCATGAAACGGATGTGC
130 GCCTAAGCTAACCCATGAAACGGATGTGC
* * * * * **
32094235 GGGCATTCAGTCGACCTG-AGATGAAGAATGCGCAAGCCGGGGATC-AGCCCGGTCCCCC-CTGC
1 GGGCACTGAGCCGACC-GAAGAGGCAGAATGCGCAAG-CGGGGATCGA-CCCGGTCCCCCTCTAA
** * * * * * * **
32094297 GTGCTACCGATCCTACT-ACAGCAACCCTCTGTCCGATCT-GATCTTAGAC-TGGGAATGAACT-
63 GTGCTGTCGGTCCCACTGCCA-CAGCCCTCAGTCCGGT-TGGGGCTTAGACAT-GGAATGAACTC
* *
32094358 TCGTATG-CTGAAG-TCAACCTATGAAAC-GAGTGTAC
125 TC-TATGCCT-AAGCT-AACCCATGAAACGGA-TGTGC
* * * * * * * * ** * *
32094393 GAGCACTGAACCGGCCGAAGA-GCATAATACGCAAGCCGAGGATCGGCTCAATCCCCTTCTGCA-
1 GGGCACTGAGCCGACCGAAGAGGCAGAATGCGCAAG-CGGGGATCGACCCGGTCCCCCTCT-AAG
* ** * *
32094456 TGCTGTCGGTCCCACTGCCATAGCCCTCAGTCTAGCTGGGGCTTAGACATGGAATGAACTCCCTA
64 TGCTGTCGGTCCCACTGCCACAGCCCTCAGTCCGGTTGGGGCTTAGACATGGAATGAACTCTCTA
* ** **
32094521 TGCCTAAGCCAACCCACAAAACGGGCGTGC
129 TGCCTAAGCTAACCCATGAAACGGATGTGC
* * * * *
32094551 GGGCACTTAGCC-AGTCGAAGAGGCAGAATGTGCAAGCTGGGGATTGGCCCGGTCCCCC
1 GGGCACTGAGCCGA-CCGAAGAGGCAGAATGCGCAAGC-GGGGATCGACCCGGTCCCCC
32094609 CTGCATGCTA
Statistics
Matches: 275, Mismatches: 76, Indels: 46
0.69 0.19 0.12
Matches are distributed among these distances:
157 38 0.14
158 158 0.57
159 78 0.28
160 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (158 bp):
GGGCACTGAGCCGACCGAAGAGGCAGAATGCGCAAGCGGGGATCGACCCGGTCCCCCTCTAAGTG
CTGTCGGTCCCACTGCCACAGCCCTCAGTCCGGTTGGGGCTTAGACATGGAATGAACTCTCTATG
CCTAAGCTAACCCATGAAACGGATGTGC
Found at i:32094503 original size:316 final size:312
Alignment explanation
Indices: 32093862--32094684 Score: 861
Period size: 316 Copynumber: 2.6 Consensus size: 312
32093852 AACTCCGTAT
* * **
32093862 GCTTAGACATGGAATGAACTCCGTATGGCTAAGCCAACCCACGAAAC-GAGTGTGTGGGCGCTCA
1 GCTTAGACATGGAATGAACTCC-TATGCCTAAGCCAACCCACGAAACGGA-TGTGCGGGCATTCA
* * * * * *
32093926 GTCGATCGAAGAGGTAGAATGCGCAACCCGAGGATTGGCCCGATCCCTCCCTGTGTGCTATCGAT
64 GTCGA-CG-AGAGGAAGAATGCGCAAGCCGGGGATTGGCCCGGTCCC-CCCTGCGTGCTACCGAT
* * *
32093991 CCTGCTACCA-CAACCCTCGATCTGATTCGATCTTAGACTGGGAGTGAACTCCATATGACT-AAG
126 CCTACTA-CAGCAACCCTCG-TCCGATT-GATCTTAGACTGGGAATGAACTCCATATG-CTGAAG
* * * * * *
32094054 TCAACCCACGAAACAAGCGTAAGGGCACTGAGCCGATCGGAGAGGCATAATGCGCAAGTCAGGGA
187 TCAACCCACGAAACAAGCGTAAGAGCACTGAACCGACCGAAGAGGCATAATACGCAAGCCAGGGA
** * * *
32094119 TCGACCCGGTCCCCCTCTAAGTGCTGTCGGTCCCACTGCCACAGCCCTCGGTCCGGTTGGG
252 TCGACCCAATCCCCCTCTAAGTGCTGTCGGTCCCACTGCCACAGCCCTCAGTCCAGCTGGG
* *
32094180 GCTTAGACATGGAATGAACTCTCTATGCCTAAGCTAACCCATGAAACGGATGTGCGGGCATTCAG
1 GCTTAGACATGGAATGAACTC-CTATGCCTAAGCCAACCCACGAAACGGATGTGCGGGCATTCAG
* **
32094245 TCGACCTGAGATGAAGAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCCTGCGTGCTACCGATCC
65 TCGA-C-GAGAGGAAGAATGCGCAAGCCGGGGATTGGCCCGGTCCCCCCTGCGTGCTACCGATCC
* *
32094310 TACTACAGCAACCCTCTGTCCGATCTGATCTTAGACTGGGAATGAACTTCGTATGCTGAAGTCAA
128 TACTACAGCAACCCTC-GTCCGAT-TGATCTTAGACTGGGAATGAACTCCATATGCTGAAGTCAA
* * * * * *
32094375 CCTATGAAACGAGTGTACGAGCACTGAACCGGCCGAAGA-GCATAATACGCAAGCC-GAGGATCG
191 CCCACGAAACAAGCGTAAGAGCACTGAACCGACCGAAGAGGCATAATACGCAAGCCAG-GGATCG
* * * * * *
32094438 GCTCAATCCCCTTCTGCA-TGCTGTCGGTCCCACTGCCATAGCCCTCAGTCTAGCTGGG
255 ACCCAATCCCCCTCT-AAGTGCTGTCGGTCCCACTGCCACAGCCCTCAGTCCAGCTGGG
* **
32094496 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCGGGCACTTAG
1 GCTTAGACATGGAATGAACT-CCTATGCCTAAGCCAACCCACGAAACGGATGTGCGGGCA-TT--
* * * * *
32094561 CCAGTCGA--AGAGGCAGAATGTGCAAGCTGGGGATTGGCCCGGTCCCCCCTGCATGCTACTGAT
62 -CAGTCGACGAGAGGAAGAATGCGCAAGCCGGGGATTGGCCCGGTCCCCCCTGCGTGCTACCGAT
* * * * * * *
32094624 CCTACTGCCGTAACCCTCAGTCCGGTTTGATCTTATACTTGGAATTAACTCCATATGCTGA
126 CCTACTACAGCAACCCTC-GTCC-GATTGATCTTAGACTGGGAATGAACTCCATATGCTGA
32094685 GATTGGGGAT
Statistics
Matches: 423, Mismatches: 67, Indels: 32
0.81 0.13 0.06
Matches are distributed among these distances:
315 1 0.00
316 217 0.51
317 102 0.24
318 92 0.22
319 4 0.01
320 7 0.02
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.21
Consensus pattern (312 bp):
GCTTAGACATGGAATGAACTCCTATGCCTAAGCCAACCCACGAAACGGATGTGCGGGCATTCAGT
CGACGAGAGGAAGAATGCGCAAGCCGGGGATTGGCCCGGTCCCCCCTGCGTGCTACCGATCCTAC
TACAGCAACCCTCGTCCGATTGATCTTAGACTGGGAATGAACTCCATATGCTGAAGTCAACCCAC
GAAACAAGCGTAAGAGCACTGAACCGACCGAAGAGGCATAATACGCAAGCCAGGGATCGACCCAA
TCCCCCTCTAAGTGCTGTCGGTCCCACTGCCACAGCCCTCAGTCCAGCTGGG
Found at i:32094645 original size:158 final size:156
Alignment explanation
Indices: 32094176--32094645 Score: 387
Period size: 158 Copynumber: 3.0 Consensus size: 156
32094166 TCGGTCCGGT
* * *
32094176 TGGGGCTTAGACATGGAATGAACTCTCTATGCCTAAGCTAACCCATGAAACGGATGTGCGGGCA-
1 TGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGTGTGCGGGCAC
* * *
32094240 TT--CAGTCGACCTGAGATGAAGAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCCTGCGTGCTA
66 TTACCAGTCGA----AGA-GCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCATGCTA
* * * * * *
32094303 CCGATCCTACTACAGCAACCCTCTGTCCGATC
126 CTGATCCTACTGCCGTAACCCTCAGT-CGAGC
** * * * * * * *
32094335 T-GATCTTAGAC-TGGGAATGAACTTCGTATG-CTGAAGTCAACCTATGAAACGAGTGTACGAGC
1 TGGGGCTTAGACAT-GGAATGAACTCCCTATGCCT-AAGCCAACCCATGAAACGGGTGTGCGGGC
* * * * * * * ** * *
32094397 ACTGAACCGGCCGAAGAGCATAATACGCAAGCCGAGGATCGGCTCAATCCCCTTCTGCATGCT-G
64 ACT-TACCAGTCGAAGAGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCC-CCTGCATGCTAC
* * * * *
32094461 TCGGTCCCACTGCCATAGCCCTCAGTCTAGC
127 T-GATCCTACTGCCGTAACCCTCAGTCGAGC
** *
32094492 TGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCGGGCAC
1 TGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGTGTGCGGGCAC
* * *
32094557 TTAGCCAGTCGAAGAGGCAGAATGTGCAAGCTGGGGATTGGCCCGGTCCCCCCTGCATGCTACTG
66 TTA-CCAGTCGAAGA-GCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCATGCTACTG
32094622 ATCCTACTGCCGTAACCCTCAGTC
129 ATCCTACTGCCGTAACCCTCAGTC
32094646 CGGTTTGATC
Statistics
Matches: 230, Mismatches: 67, Indels: 29
0.71 0.21 0.09
Matches are distributed among these distances:
157 35 0.15
158 158 0.69
159 32 0.14
162 5 0.02
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (156 bp):
TGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGTGTGCGGGCAC
TTACCAGTCGAAGAGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCATGCTACTGAT
CCTACTGCCGTAACCCTCAGTCGAGC
Found at i:32094855 original size:26 final size:26
Alignment explanation
Indices: 32094826--32094878 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
32094816 CCGGTCTGAT
32094826 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
32094852 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
32094878 C
1 C
32094879 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:32094930 original size:171 final size:171
Alignment explanation
Indices: 32094631--32094950 Score: 390
Period size: 171 Copynumber: 1.9 Consensus size: 171
32094621 GATCCTACTG
* * * * * *
32094631 CCGTAACCCTCAGTCCGGTTTGATCTTATACTTGGAATTAACTCCATATGCTGAGATTGGGGATG
1 CCGTAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTGAGAATGGGAATG
* * *
32094696 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGTTCAGCCGACCAAAGAGGCAG
66 AACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGCGCTCAGCCGACCAAAGAGGCAG
* **
32094761 GATGCGTAAGCCGAGGATCAAACAGGTGGTAGGTCCTGTCA
131 AATGCACAAGCCGAGGATCAAACAGGTGGTAGGTCCTGTCA
* * *
32094802 CCGTAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAT-GGAAT
1 CCGTAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTGAGA-ATGGGAAT
* * * * * * * ***
32094866 GAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTATGGGTGCTCAGTCGGCTGGAGAGGCA
65 GAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGCGCTCAGCCGACCAAAGAGGCA
*
32094931 GAATGCACAAGCCGGGGATC
130 GAATGCACAAGCCGAGGATC
32094951 GGCCCAGTCC
Statistics
Matches: 122, Mismatches: 26, Indels: 2
0.81 0.17 0.01
Matches are distributed among these distances:
171 121 0.99
172 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.28, T:0.21
Consensus pattern (171 bp):
CCGTAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTGAGAATGGGAATG
AACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGCGCTCAGCCGACCAAAGAGGCAG
AATGCACAAGCCGAGGATCAAACAGGTGGTAGGTCCTGTCA
Found at i:32095245 original size:159 final size:157
Alignment explanation
Indices: 32094851--32095290 Score: 488
Period size: 159 Copynumber: 2.8 Consensus size: 157
32094841 AACTCCGTAT
* *
32094851 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTATGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGTGCTCAG
** * * * *
32094916 TCGGCTGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCAGTCCCACCCTACGTGCTGTCGATC
66 TCGGC-GGAGAGGCAGAATGCGTAAGCCGAGGATCGGCCCGGTCCC-CCCTGCGTGCTATCGATC
* * * *
32094981 CTGCTGTCGCAACCCTCGGTCCGGTTCGA
129 CCGCTGCCACAACCCTCAGTCCGGTTCGA
* * * * * * * * *
32095010 TCTTAGAC-TGGGAATGAACTCTGTATGTCTAAGTCAACCCACGAAACGAGCGTGCGGGCGTTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGTGCTCA
* * * * * * *
32095074 GCTAGCCAGAGAGGCATAATGCGTAAGTCGATGATCGACCCGGTCCCCCTCTGCGTGCTATCGAT
65 G-TCGGCGGAGAGGCAGAATGCGTAAGCCGAGGATCGGCCCGGTCCCCC-CTGCGTGCTATCGAT
* *
32095139 CCCGCTGCCACAACCCTCAGTCCGGTTGGG
128 CCCGCTGCCACAACCCTCAGTCCGGTTCGA
* * *
32095169 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAC-AGACGTGTAGATGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAG-CGTGTGGGTGCTCA
* *
32095233 GTCGGTCGGAGAGGCAGAATGCGTAAGCCAAGGATCGGCCTGGTCCCCCCTGCGTGCT
65 GTCGG-CGGAGAGGCAGAATGCGTAAGCCGAGGATCGGCCCGGTCCCCCCTGCGTGCT
32095291 GCCGATCTTG
Statistics
Matches: 224, Mismatches: 51, Indels: 13
0.78 0.18 0.05
Matches are distributed among these distances:
158 16 0.07
159 204 0.91
160 4 0.02
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGTGCTCAG
TCGGCGGAGAGGCAGAATGCGTAAGCCGAGGATCGGCCCGGTCCCCCCTGCGTGCTATCGATCCC
GCTGCCACAACCCTCAGTCCGGTTCGA
Found at i:32095404 original size:26 final size:26
Alignment explanation
Indices: 32095328--32095406 Score: 122
Period size: 26 Copynumber: 3.0 Consensus size: 26
32095318 CTGGTCCAAT
* * *
32095328 CTTAGACTGGGAATAAACTCTATATG
1 CTTAGACTGGGGATGAACTCTGTATG
32095354 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGGATGAACTCTGTATG
*
32095380 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCTGTATG
32095406 C
1 C
32095407 CTAAGTCCAC
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCTGTATG
Found at i:32096424 original size:26 final size:26
Alignment explanation
Indices: 32096395--32096447 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
32096385 CTGATCCAAT
*
32096395 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
32096421 CTTAGACTGGGGATGAATTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
32096447 C
1 C
32096448 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:32096633 original size:26 final size:26
Alignment explanation
Indices: 32096604--32096655 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
32096594 CCGATCTGGT
32096604 CTTAGA-ATGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
32096630 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
32096656 TCTAAGCCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.31, C:0.15, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:32096932 original size:158 final size:158
Alignment explanation
Indices: 32096630--32096965 Score: 392
Period size: 158 Copynumber: 2.1 Consensus size: 158
32096620 ACTCCGTATG
* * * *
32096630 CTTAGAC-ATGGAATGAACTTCGTATGTCTAAGCCAACCCACAAAATGAGCGTGCGGGCGCTCAA
1 CTTAGACTA-GGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAA
** * * ** *
32096694 CCGGCCGGAGAGGCAGAATGCACAAGCCAGGGATCGGCCTGGTCCCCCTTTTATGCTAACGATCT
65 CAAGCCGGAGAGGCAGAATGCACAAGCCAGGGATCGACATGGTCCCCCTTGCATGCTAACGATCC
* *
32096759 TGCTACCACAACCCTTGGTCCGGTCT-GAT
130 TGCTACCACAACCCTTAGTCCAGT-TAGAT
*
32096788 CTTAGACTAGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCGGGCGCTCAAC
1 CTTAGACTAGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAAC
* * * * *
32096853 AAGCTGGAGAGGCAGAATGCGCAAGCCGGGGATCGACATGGTCCCCGC-TGCGTGCT-GCTGATC
66 AAGCCGGAGAGGCAGAATGCACAAGCCAGGGATCGACATGGTCCCC-CTTGCATGCTAAC-GATC
* ** *
32096916 CTGCTGCTGCAGCCCTTAGTCCAGTTAGAT
129 CTGCTACCACAACCCTTAGTCCAGTTAGAT
*
32096946 CTTAGACTGGGAATGAACTC
1 CTTAGACTAGGAATGAACTC
32096966 TGTATGCTTA
Statistics
Matches: 150, Mismatches: 24, Indels: 8
0.82 0.13 0.04
Matches are distributed among these distances:
157 2 0.01
158 146 0.97
159 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (158 bp):
CTTAGACTAGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAAC
AAGCCGGAGAGGCAGAATGCACAAGCCAGGGATCGACATGGTCCCCCTTGCATGCTAACGATCCT
GCTACCACAACCCTTAGTCCAGTTAGAT
Found at i:32096982 original size:26 final size:26
Alignment explanation
Indices: 32096946--32096998 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
32096936 CCAGTTAGAT
*
32096946 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
32096972 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
32096998 C
1 C
32096999 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:32100107 original size:26 final size:26
Alignment explanation
Indices: 32100078--32100128 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
32100068 CCGGTTCGAT
**
32100078 CTTAGACTGGGAATGAACTCCGTATA
1 CTTAGACAAGGAATGAACTCCGTATA
32100104 CTTAGACAAGGAATGAACTCCGTAT
1 CTTAGACAAGGAATGAACTCCGTAT
32100129 GCCTAAGCCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.33, C:0.20, G:0.22, T:0.25
Consensus pattern (26 bp):
CTTAGACAAGGAATGAACTCCGTATA
Found at i:32100396 original size:158 final size:157
Alignment explanation
Indices: 32100104--32100469 Score: 407
Period size: 158 Copynumber: 2.3 Consensus size: 157
32100094 ACTCCGTATA
* * * *
32100104 CTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATAAGCGTGTGGGCACTCAGT
1 CTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCATGTGGGCACTCAGT
* ** *
32100169 CAGCTGGAGAGGTAGAATGCAAAAGTCGAGGATCGACCCGATCCCCCCTGTGTGCTATCGATCTT
65 CAGCTGGAGAGGCAGAATGCAAAAGTCGAGGATCGACCCGATCCCCCCTGCATGCTATCGATCTG
* * * *
32100234 GCTACCGCAACCCTCGGTCTGATCT-GAT
130 GCTACCACAACCCTCAGTCTG-GCTGGAG
* * ** *
32100262 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCAT-TGGGTGCTGAG-
1 CTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCATGTGGGCACTCAGT
* * ** * * * *
32100325 CAGGTCGGAGAGGCATAATGCGTAAGTCGAGGATC-ATCTCGGTCCCCCTCTGCATGCTGTCGGT
65 CAGCT-GGAGAGGCAGAATGCAAAAGTCGAGGATCGA-CCCGATCCCCC-CTGCATGCTATCGAT
32100389 CTGGCTACCACAACCCTCAGTCTGGCTGGAG
127 CTGGCTACCACAACCCTCAGTCTGGCTGGAG
*
32100420 CTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCCATGAAATGAGC
1 CTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGC
32100470 GTGCCGGAGC
Statistics
Matches: 174, Mismatches: 28, Indels: 12
0.81 0.13 0.06
Matches are distributed among these distances:
156 5 0.03
157 44 0.25
158 124 0.71
159 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.25, T:0.21
Consensus pattern (157 bp):
CTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCATGTGGGCACTCAGTC
AGCTGGAGAGGCAGAATGCAAAAGTCGAGGATCGACCCGATCCCCCCTGCATGCTATCGATCTGG
CTACCACAACCCTCAGTCTGGCTGGAG
Found at i:32101139 original size:26 final size:26
Alignment explanation
Indices: 32101088--32101139 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
32101078 TCCAATCCGA
*
32101088 TCTTAGACTGGGAATGAACTCGGTAT
1 TCTTAGACTGGGAATGAACTCCGTAT
** *
32101114 TCTTAGACTGGGGTTGAGCTCCGTAT
1 TCTTAGACTGGGAATGAACTCCGTAT
32101140 GCCTAAGCCA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.21, C:0.17, G:0.29, T:0.33
Consensus pattern (26 bp):
TCTTAGACTGGGAATGAACTCCGTAT
Found at i:32101668 original size:26 final size:26
Alignment explanation
Indices: 32101628--32101679 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
32101618 TGGTTTGATA
32101628 TTAGACTAGGAATGAACTCCGTATGC
1 TTAGACTAGGAATGAACTCCGTATGC
*
32101654 TTAGACTAGGGATGAACTCCGTATGC
1 TTAGACTAGGAATGAACTCCGTATGC
32101680 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTCCGTATGC
Found at i:32101942 original size:844 final size:855
Alignment explanation
Indices: 32100905--32102522 Score: 1860
Period size: 868 Copynumber: 1.9 Consensus size: 855
32100895 CCAGTCCCGT
* * ** *
32100905 TGCCACAACCCTCGGTCTGGCTGGGGCTTTGACATGGAATGAACTCCCTACGCCTATGCCAACCC
1 TGCCACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATGAACTCCAAACGCCTAAGCCAACCC
* * ** * * * *
32100970 ACGAAACGGGCGTACGGGTGCTCAACCGGTCAGAGAGGCAGAATGCATAAGCTAGGGATTAGCCC
66 ACGAAACAGGAGTACGGGCACTCAACCAGCCAGAGAGGCAGAATGCACAAGCTAGGGATCAGCCC
* *
32101035 GGTCCCCCCTGCGTGCTACCGATCCTGCTGTCGTAACCCTCGGTCCAATCCGATCTTAGACTGGG
131 GGTCCCCCCTGCGTGCTACCGATCCTACTGTCGCAACCCTCGGTCCAATCCGATCTTAGACTGGG
* * * * * * *
32101100 AATGAACTCGGTATTCTTAGACTGGGGTTGAGCTCCGTATGCCTAAGCCAACCCACGAAATGAG-
196 AATGAACTCCGTATGCTTAGACTGGGGATAAACTCCATATGCCTAAGCCAACCCACGAAACGAGA
* ** *
32101164 TGTACGGGCGCTCA-G-C-A-GGC-CAAAAAGGCTGAATGCGCAAGCCGGGGACCGACCCGAT-C
261 TGT--GGGCACTCACGACGAGGGCGCAAAAAGGCAAAATGCGCAAGCCGGGGACCAACCCGATCC
* * * * *
32101223 CCCT-C-CTGT-G-T-GCTATCGATCCTGCTGCCGCAAC-CTTCGATCCGGTC-GGATCTTAGAC
324 CCCTGCACTGTCGATCGCTACCGATCCGGCTGCCACAACAC-TCGAT-CGGACTGGAGCTTAGAC
* * * * * *
32101281 -TGGGAATGAAGTCCGTATG-GTGAAGTC-AATCCATGAAACGAGCAT-TCGGGCACTGAGGC-G
387 AT-GGAATGAACTCCGTATGCCT-AAG-CAAACCCACGAAACGAGCATGT-GGACACTCA-GCTG
* * * * * *
32101341 ACCGGAGAGGCATAATGCGTAAGCCGAGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCTGC
447 ACCGGACAGGCAGAATGCGTAAGCCGAGGATCGACCCAGTCCCCCCTACGTGCTGTCGATCATGC
* * * * * *
32101406 TACTGGTCTTGGTGCCACAACCCTCGATCCGATCTGATCTTAGGCTGGGAAAGAACTCCATATGC
512 TACTGGTCCTGCTACCACAACCCTCGATCCAATCTGATCTTAGACTGGGAAAGAACTCCATATGA
*
32101471 TTAGACATGGAATGAACTCCGTATGCCTAAG-CAACCCACGAAACGAA-CGTCCGGGAGCTCAGC
577 TTAGACATGGAATGAACTCCG-ATGCCTAAGCCAACCCACGAAAC-AAGCGTCCGGGAGCTCAAC
* * * **
32101534 CGGTC-GAAGAGGCAGAATGCACAAGCCGGGGATCGACCCGGTCCCC-CCTGCATGATATCGATC
640 CGGCCAG-AGAGGCAGAATACACAAGCCGGGGACCGACCCGGTCCCCACAAGCATGATATCGATC
* * * **
32101597 CTGCTACCGCAACCCTCGGTCTGGTTTGATATTAGACTAGGAATGAACTCCGTATGCTTAGACTA
704 CTGCTACCCCAACCCTCAGTCCGGTCCGATATTAGACTAGGAATGAACTCCGTATGCTTAGACTA
32101662 GGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGTCGAAAAGAG
769 GGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGTCGAAAAGAG
32101727 TCGATCCCATTATCGGTCCTGC
834 TCGATCCCATTATCGGTCCTGC
* * ** *
32101749 TGCCATAACCCTCGGTCTGACTGGGGCTTAGACATGTAATGAACTGTAAATGCCTAAGCCAACCC
1 TGCCACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATGAACTCCAAACGCCTAAGCCAACCC
* * * * * *
32101814 ATGAAACAGGAGTGCGGGCACTCAGCCAGCCGGAGAGGCAGAATGCACAAGCTAGGGATCCGCTC
66 ACGAAACAGGAGTACGGGCACTCAACCAGCCAGAGAGGCAGAATGCACAAGCTAGGGATCAGCCC
* ** * ** **
32101879 GGTCCCCTCTGCGTGCTGTCGATCCTACTGTCGCAACCCTCGGTTCGTTTTGATCTTAGACTGGG
131 GGTCCCCCCTGCGTGCTACCGATCCTACTGTCGCAACCCTCGGTCCAATCCGATCTTAGACTGGG
* * *
32101944 AATGAACTCCGTATGCTTAGACTGGGGATAAACTCCATATGCCTATGTCAACCCATGAAACGAGC
196 AATGAACTCCGTATGCTTAGACTGGGGATAAACTCCATATGCCTAAGCCAACCCACGAAACGAG-
** * * *
32102009 ATGTGGGCACTCAGTCGATCGGAGTGGCTGGTCGGAAAGGCAAAATGCGTAAGCTGGGGATCAAC
260 ATGTGGGCACTCA--CGA-C-GAG-GGC--G-CAAAAAGGCAAAATGCGCAAGCCGGGGACCAAC
* *
32102074 CCGATCCCCCCTGCATGCTGTCGATCCCGCTACCGATCCGGCTGCCACAACACTCGGTCTGACTG
317 CCGAT-CCCCCTGCA--CTGTCGAT--CGCTACCGATCCGGCTGCCACAACACTCGATCGGACTG
* * *
32102139 GGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCAAACCCACGAAACGAGCGTGTGGACACTC
377 GAGCTTAGACATGGAATGAACTCCGTATGCCTAAGCAAACCCACGAAACGAGCATGTGGACACTC
* * *
32102204 AGCTGGCCGGACAGGCAGAATGCGTAAGCCGGGGATCGACCCAGTCCCCCCTACGTGCTGTTGAT
442 AGCTGACCGGACAGGCAGAATGCGTAAGCCGAGGATCGACCCAGTCCCCCCTACGTGCTGTCGAT
* ** * * *
32102269 CATGTTACTGGTCCTGCTACCGTAACCCTCGGTCCAATCTGATCTTAGACTGGGAATGAACTCCG
507 CATGCTACTGGTCCTGCTACCACAACCCTCGATCCAATCTGATCTTAGACTGGGAAAGAACTCCA
* * *
32102334 TATGATTAGACATGGAATGAACTCCGATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGTGCTT
572 TATGATTAGACATGGAATGAACTCCGATGCCTAAGCCAACCCACGAAACAAGCGTCCGGGAGCTC
* * *
32102399 AACCGGCCAGAGAGGCAGAATACGCAAGCCGGGGACCGACCCGGTCCCCACAAGCATGTTGTCGA
637 AACCGGCCAGAGAGGCAGAATACACAAGCCGGGGACCGACCCGGTCCCCACAAGCATGATATCGA
* *
32102464 TCCTGCTACCCCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
702 TCCTGCTACCCCAACCCTCAGTCCGGTCCGATATTAGACTAGGAATGAACTCCGTATGC
32102523 CTAAGTCAAC
Statistics
Matches: 628, Mismatches: 109, Indels: 49
0.80 0.14 0.06
Matches are distributed among these distances:
844 223 0.36
846 3 0.00
847 1 0.00
849 1 0.00
851 1 0.00
853 3 0.00
857 30 0.05
859 5 0.01
860 1 0.00
863 4 0.01
864 1 0.00
865 1 0.00
867 17 0.03
868 269 0.43
869 68 0.11
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (855 bp):
TGCCACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATGAACTCCAAACGCCTAAGCCAACCC
ACGAAACAGGAGTACGGGCACTCAACCAGCCAGAGAGGCAGAATGCACAAGCTAGGGATCAGCCC
GGTCCCCCCTGCGTGCTACCGATCCTACTGTCGCAACCCTCGGTCCAATCCGATCTTAGACTGGG
AATGAACTCCGTATGCTTAGACTGGGGATAAACTCCATATGCCTAAGCCAACCCACGAAACGAGA
TGTGGGCACTCACGACGAGGGCGCAAAAAGGCAAAATGCGCAAGCCGGGGACCAACCCGATCCCC
CTGCACTGTCGATCGCTACCGATCCGGCTGCCACAACACTCGATCGGACTGGAGCTTAGACATGG
AATGAACTCCGTATGCCTAAGCAAACCCACGAAACGAGCATGTGGACACTCAGCTGACCGGACAG
GCAGAATGCGTAAGCCGAGGATCGACCCAGTCCCCCCTACGTGCTGTCGATCATGCTACTGGTCC
TGCTACCACAACCCTCGATCCAATCTGATCTTAGACTGGGAAAGAACTCCATATGATTAGACATG
GAATGAACTCCGATGCCTAAGCCAACCCACGAAACAAGCGTCCGGGAGCTCAACCGGCCAGAGAG
GCAGAATACACAAGCCGGGGACCGACCCGGTCCCCACAAGCATGATATCGATCCTGCTACCCCAA
CCCTCAGTCCGGTCCGATATTAGACTAGGAATGAACTCCGTATGCTTAGACTAGGGATGAACTCC
GTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGTCGAAAAGAGTCGATCCCATTA
TCGGTCCTGC
Found at i:32101969 original size:26 final size:26
Alignment explanation
Indices: 32101933--32101985 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
32101923 TCGTTTTGAT
* *
32101933 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCATATG
*
32101959 CTTAGACTGGGGATAAACTCCATATG
1 CTTAGACTGGGAATAAACTCCATATG
32101985 C
1 C
32101986 CTATGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCATATG
Found at i:32102845 original size:158 final size:158
Alignment explanation
Indices: 32102339--32102876 Score: 509
Period size: 159 Copynumber: 3.4 Consensus size: 158
32102329 CTCCGTATGA
* * *
32102339 TTAGACATGGAATGAACTCCG-ATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGTGCTTAACC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGCC
* * * * * ** * *
32102403 GGCCAGAGAGGCAGAATACGCAAGCCGGGGACCGACCCGGTCCCCACAAGCATGTTGTCGATCCT
66 GGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCTGACCCC-CCTGCGTGCTGTCGATCCT
* ** *
32102468 GCTACCCCAACCCTCAGTCCGGTCCGATC
130 GCTACCACAACCCTCAGTCTAGTCCAATC
* * *
32102497 TTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCG-GACGGGTGCTGAG
1 TTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTG-CGGGTGCTCAG
* * * * * *
32102560 CCGGCCAGAGAGGCATAATGCGCAAGTCGGGGAT-GGGCTTGATCCCCCTCTACGTGCTGTCGGT
64 CCGGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCTGA-CCCCC-CTGCGTGCTGTCGAT
* * * * * * **
32102624 CCCGTTACCACAACCCTCGGT-TCGGCTAGGGC
127 CCTGCTACCACAACCCTCAGTCTAGTCCA-ATC
* * *** *
32102656 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGCCACTCAGTC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGCC
* * *
32102721 GGTCGGAGAGACAGAATGCGCAAGCCGGGGATCGGCCCTGACCCCCCTGCGTGCTGTCGATCCTG
66 GGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCTGACCCCCCTGCGTGCTGTCGATCCTG
* * *
32102786 CTGCCGCAACCCTTAGTCTAGTCCAATC
131 CTACCACAACCCTCAGTCTAGTCCAATC
* * *
32102814 TTAGACATGGAATG-ACTCCGCTATGCCTAAG-C-ACCAACAAAAC-AGCGTGCCGGTCGCTCAG
1 TTAGACATGGAATGAACTCCG-TATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGT-GCTCAG
32102875 CC
64 CC
32102877 AGATCGAGAG
Statistics
Matches: 299, Mismatches: 69, Indels: 26
0.76 0.18 0.07
Matches are distributed among these distances:
155 7 0.02
156 15 0.05
157 7 0.02
158 79 0.26
159 183 0.61
160 8 0.03
ACGTcount: A:0.24, C:0.32, G:0.27, T:0.17
Consensus pattern (158 bp):
TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGCC
GGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCTGACCCCCCTGCGTGCTGTCGATCCTG
CTACCACAACCCTCAGTCTAGTCCAATC
Found at i:32103168 original size:26 final size:26
Alignment explanation
Indices: 32103139--32103188 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
32103129 TGGTTCGATA
*
32103139 TTAGACTAGGAATGAACTCTGTATAC
1 TTAGACTAGGAATGAACTCCGTATAC
* *
32103165 TTAGACTGGGGATGAACTCCGTAT
1 TTAGACTAGGAATGAACTCCGTAT
32103189 GCCTAAGTCA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTCCGTATAC
Found at i:32103740 original size:184 final size:184
Alignment explanation
Indices: 32103421--32103763 Score: 424
Period size: 184 Copynumber: 1.9 Consensus size: 184
32103411 CTATTGCTAG
* * * * *
32103421 TCCTGCTATCGTAACCCTCAGTTCAGTCCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGAC
1 TCCTGCTATCGTAACCCTCAGATCAGTCCAATATTAGACTGGGAATGAACTCCATATGCTTAGAC
* * * * * *
32103486 ATGGAATGAACTCCCTTTGCCTAACCCAACCCATGAAACGGGTGTACAGGCGCTCAGCCGGCCGG
66 ATGGAATGAACTCCCTATGCCTAACCCAACCCATGAAACGAGCGTACAGGCGCTCAACCGACCAG
*
32103551 AGAGGCAGAATGCACAAGCTGGGGATCAACTCGATCCCCCCTACGTGCTACTGA
131 AGAGGCAGAATGCACAAGCCGGGGATCAACTCGATCCCCCCTACGTGCTACTGA
* *
32103605 TCCTGCTATCGTAACCCTC-GATCCGATCCAATATTTGACTGGGAATGAACTCCATATGCTTAGA
1 TCCTGCTATCGTAACCCTCAGATCAG-TCCAATATTAGACTGGGAATGAACTCCATATGCTTAGA
* ** ** *
32103669 C-TAGGGATGAACTCTGTATGCCTAAGTCAACCCACT-AAACGAGCGTGC-GGACGCTCAACCGA
65 CAT-GGAATGAACTCCCTATGCCTAACCCAACCCA-TGAAACGAGCGTACAGG-CGCTCAACCGA
* *
32103731 CCAGAGAGGCAGGATGCGCAAGCCGGGGATCAA
127 CCAGAGAGGCAGAATGCACAAGCCGGGGATCAA
32103764 ACGGGTGATA
Statistics
Matches: 133, Mismatches: 22, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
183 7 0.05
184 125 0.94
185 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.24, T:0.21
Consensus pattern (184 bp):
TCCTGCTATCGTAACCCTCAGATCAGTCCAATATTAGACTGGGAATGAACTCCATATGCTTAGAC
ATGGAATGAACTCCCTATGCCTAACCCAACCCATGAAACGAGCGTACAGGCGCTCAACCGACCAG
AGAGGCAGAATGCACAAGCCGGGGATCAACTCGATCCCCCCTACGTGCTACTGA
Found at i:32104684 original size:97 final size:97
Alignment explanation
Indices: 32104516--32104691 Score: 244
Period size: 97 Copynumber: 1.8 Consensus size: 97
32104506 CCTATATGTT
* * * * * *
32104516 CTGCCAATCCCGCTGTCATAACCCTCGGTCTGGCTGGGGCCTAGACATGGAATGAACTCCCTATG
1 CTGCCAATCCCGCTGCCACAACCCTCAGTCCGACTAGGGCCTAGACATGGAATGAACTCCCTATG
32104581 CATAAGCCAACCCAAGCCAACCCTCGATCCCG
66 CATAAGCCAACCCAAGCCAACCCTCGATCCCG
** * * *
32104613 CTGCCAATCTTGCTGCCACAACCCTCAGTCCGACTAGGGCTTAGACATGGAATGAACTTCGTATG
1 CTGCCAATCCCGCTGCCACAACCCTCAGTCCGACTAGGGCCTAGACATGGAATGAACTCCCTATG
*
32104678 CCTAAGCCAACCCA
66 CATAAGCCAACCCA
32104692 CGAAACGAGG
Statistics
Matches: 67, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
97 67 1.00
ACGTcount: A:0.25, C:0.35, G:0.20, T:0.20
Consensus pattern (97 bp):
CTGCCAATCCCGCTGCCACAACCCTCAGTCCGACTAGGGCCTAGACATGGAATGAACTCCCTATG
CATAAGCCAACCCAAGCCAACCCTCGATCCCG
Found at i:32105010 original size:26 final size:27
Alignment explanation
Indices: 32104981--32105038 Score: 84
Period size: 26 Copynumber: 2.2 Consensus size: 27
32104971 CCGATCTGAT
32104981 CTTAGAC-TAGGAATGAACTCCGTATG-
1 CTTAGACAT-GGAATGAACTCCGTATGC
*
32105007 CTTAGGCATGGAATGAACTCCGTATGC
1 CTTAGACATGGAATGAACTCCGTATGC
32105034 CTTAG
1 CTTAG
32105039 CCAACCCACG
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
26 23 0.79
27 6 0.21
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.28
Consensus pattern (27 bp):
CTTAGACATGGAATGAACTCCGTATGC
Found at i:32105522 original size:26 final size:26
Alignment explanation
Indices: 32105483--32105533 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
32105473 TGGTCTGATC
32105483 TAGACTAGGAATGAACTCCGTATGCT
1 TAGACTAGGAATGAACTCCGTATGCT
*
32105509 TAGACTA-GAGATGAACTTCGTATGC
1 TAGACTAGGA-ATGAACTCCGTATGC
32105534 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 2 0.09
26 21 0.91
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (26 bp):
TAGACTAGGAATGAACTCCGTATGCT
Found at i:32106047 original size:158 final size:158
Alignment explanation
Indices: 32105765--32106060 Score: 353
Period size: 158 Copynumber: 1.9 Consensus size: 158
32105755 CTGCTGCTAA
* * * * * *
32105765 GAATGAAGTCCGTATGCCTAAGTCAACCCATGAAACAAGTGTGTGGGCGCTGAGCCAGCCGGAGA
1 GAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGCGCTCAGCCAGCCGGAGA
* * * ** * *
32105830 GGCATAATGCGTAAGCCGGGATTGGTCCGATCCCCCTCTGTGTGCTACTAGTCCCACTGCCACAA
66 GGCAGAATGCGCAAGCCGGGATCGACCCGATCCCCCTCTGCGTGCTACGAGTCCCACTGCCACAA
32105895 CCCTCGATTCGGCTGGGGCTAAGACATG
131 CCCTCGATTCGGCTGGGGCTAAGACATG
** *
32105923 GAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAGCCGGCCGGAGA
1 GAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGCGCTCAGCCAGCCGGAGA
* * * ** * *
32105988 GGCAGAATGTGCAAGTCGGGGATCGACCCGGTTTCCC-CTGCGTGCTGCCGA-TCCTACTGCCAC
66 GGCAGAATGCGCAAG-CCGGGATCGACCCGATCCCCCTCTGCGTGCT-ACGAGTCCCACTGCCAC
32106051 AACCCTCGAT
129 AACCCTCGAT
32106061 CCGGTCTGAT
Statistics
Matches: 113, Mismatches: 23, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
158 97 0.86
159 16 0.14
ACGTcount: A:0.22, C:0.30, G:0.29, T:0.19
Consensus pattern (158 bp):
GAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGCGCTCAGCCAGCCGGAGA
GGCAGAATGCGCAAGCCGGGATCGACCCGATCCCCCTCTGCGTGCTACGAGTCCCACTGCCACAA
CCCTCGATTCGGCTGGGGCTAAGACATG
Found at i:32106097 original size:158 final size:158
Alignment explanation
Indices: 32105765--32106097 Score: 350
Period size: 158 Copynumber: 2.1 Consensus size: 158
32105755 CTGCTGCTAA
* * * * *
32105765 GAATGAAGTCCGTATGCCTAAGTCAACCCATGAAACAAGTGTGTGGGCGCTGAGCCAGCCGGAGA
1 GAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGCGCTCAGCCAGCCGGAGA
* * * ** * *
32105830 GGCATAATGCGTAAGCCGGGATTGGTCCGATCCCCCTCTGTGTGCTACTAGTCCCACTGCCACAA
66 GGCAGAATGCGCAAGCCGGGATCGACCCGATCCCCCTCTGCGTGCTACGAGTCCCACTGCCACAA
* *
32105895 CCCTCGATTCGGCTGGGGCTAAGACATG
131 CCCTCGATCCGGCTGAGGCTAAGACATG
* ** *
32105923 GAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAGCCGGCCGGAGA
1 GAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGCGCTCAGCCAGCCGGAGA
* * * ** * *
32105988 GGCAGAATGTGCAAGTCGGGGATCGACCCGGTTTCCC-CTGCGTGCTGCCGA-TCCTACTGCCAC
66 GGCAGAATGCGCAAG-CCGGGATCGACCCGATCCCCCTCTGCGTGCT-ACGAGTCCCACTGCCAC
* *
32106051 AACCCTCGATCCGGTCTGATG-TGAGAC-TGG
129 AACCCTCGATCCGG-CTGAGGCTAAGACAT-G
*
32106081 GAATGAACTCTGTATGC
1 GAATGAACTCCGTATGC
32106098 TTAGACTGGG
Statistics
Matches: 142, Mismatches: 29, Indels: 8
0.79 0.16 0.04
Matches are distributed among these distances:
157 1 0.01
158 121 0.85
159 20 0.14
ACGTcount: A:0.22, C:0.29, G:0.29, T:0.20
Consensus pattern (158 bp):
GAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGCGCTCAGCCAGCCGGAGA
GGCAGAATGCGCAAGCCGGGATCGACCCGATCCCCCTCTGCGTGCTACGAGTCCCACTGCCACAA
CCCTCGATCCGGCTGAGGCTAAGACATG
Found at i:32106103 original size:26 final size:26
Alignment explanation
Indices: 32106074--32106123 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
32106064 GTCTGATGTG
*
32106074 AGACTGGGAATGAACTCTGTATGCTT
1 AGACTGGGAATGAAATCTGTATGCTT
*
32106100 AGACTGGGGATGAAATCTGTATGC
1 AGACTGGGAATGAAATCTGTATGC
32106124 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.14, G:0.30, T:0.28
Consensus pattern (26 bp):
AGACTGGGAATGAAATCTGTATGCTT
Found at i:32106838 original size:24 final size:26
Alignment explanation
Indices: 32106806--32106860 Score: 87
Period size: 24 Copynumber: 2.2 Consensus size: 26
32106796 GCTCAAACTT
*
32106806 TTAGACATGG-ATGAACTC-GTATGC
1 TTAGACATGGAATGAACTCTATATGC
32106830 TTAGACATGGAATGAACTCTATATGC
1 TTAGACATGGAATGAACTCTATATGC
32106856 TTAGA
1 TTAGA
32106861 TCAGAATGAA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
24 10 0.36
25 8 0.29
26 10 0.36
ACGTcount: A:0.33, C:0.15, G:0.22, T:0.31
Consensus pattern (26 bp):
TTAGACATGGAATGAACTCTATATGC
Found at i:32106867 original size:25 final size:24
Alignment explanation
Indices: 32106806--32106880 Score: 73
Period size: 25 Copynumber: 3.0 Consensus size: 24
32106796 GCTCAAACTT
*
32106806 TTAGACATGG-ATGAACTCGTATGC
1 TTAGACA-GGAATGAACTCATATGC
32106830 TTAGACATGGAATGAACTCTATATGC
1 TTAGACA-GGAATGAACTC-ATATGC
* *
32106856 TTAGATCA-GAATGAATTCCTATGC
1 TTAGA-CAGGAATGAACTCATATGC
32106880 T
1 T
32106881 AAGCCAACCT
Statistics
Matches: 45, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
24 16 0.36
25 17 0.38
26 10 0.22
27 2 0.04
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (24 bp):
TTAGACAGGAATGAACTCATATGC
Found at i:32107811 original size:141 final size:141
Alignment explanation
Indices: 32107544--32107811 Score: 311
Period size: 141 Copynumber: 1.9 Consensus size: 141
32107534 GCTTAGACAT
* *
32107544 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCATACAGGTGCCCAGTCGACCGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCATACAGGTGCCCAGCCGACCGAAG
* * * *
32107609 AGGCAAAATAAGCAAGTCGGGGATCGGCCCGGTCCCCCCCTATGTGCTGCCAATCCTGCTGCTGG
66 AGGCAAAATAAGCAAGTCGGGGATCGGCCCGATCCCCCCCTACGTGCTACCAATCCCGCTGCTGG
32107674 TCCTGCTACTG
131 TCCTGCTACTG
* * * ** *** **
32107685 GGAATGAACTCTGTATGCCTAAGTCAACCCATGAAATGAGCATGTGGGTGCTGAGCCGACCGAAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCATACAGGTGCCCAGCCGACCGAAG
* ** * * * * **
32107750 AGGCATAATGCGTAAGTCGGGGATTGGCCCGATCCCCCTCTGCGTGCTACCGGTCCCGCTGC
66 AGGCAAAATAAGCAAGTCGGGGATCGGCCCGATCCCCCCCTACGTGCTACCAATCCCGCTGC
32107812 CACAACCCTC
Statistics
Matches: 102, Mismatches: 25, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
141 102 1.00
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.19
Consensus pattern (141 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCATACAGGTGCCCAGCCGACCGAAG
AGGCAAAATAAGCAAGTCGGGGATCGGCCCGATCCCCCCCTACGTGCTACCAATCCCGCTGCTGG
TCCTGCTACTG
Found at i:32108741 original size:26 final size:26
Alignment explanation
Indices: 32108703--32108755 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32108693 GGCTCAAACT
*
32108703 CTTAGACTAGGAATGAACTCCTTATG
1 CTTAGACTAGGAATGAACTCCGTATG
32108729 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
32108755 C
1 C
32108756 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:32109050 original size:26 final size:26
Alignment explanation
Indices: 32109014--32109066 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
32109004 CCAGTTAGAT
32109014 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
32109040 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
32109066 C
1 C
32109067 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:32109261 original size:26 final size:26
Alignment explanation
Indices: 32109223--32109275 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
32109213 CCGGTCCGAT
* *
32109223 CTTAGATAGGGAATTAACT-TCGTATG
1 CTTAGACAGGGAATGAACTCT-GTATG
*
32109249 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACAGGGAATGAACTCTGTATG
32109275 C
1 C
32109276 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.15, G:0.23, T:0.32
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCTGTATG
Found at i:32109595 original size:26 final size:26
Alignment explanation
Indices: 32109566--32109618 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
32109556 CCAGTTCGAT
*
32109566 CTTAGACTGGGAATGATCTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* * *
32109592 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
32109618 C
1 C
32109619 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:32109983 original size:26 final size:26
Alignment explanation
Indices: 32109945--32109996 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
32109935 TCTTGTTCGA
32109945 TCTTAGAATTGGAATGAACTATGTAT
1 TCTTAGAATTGGAATGAACTATGTAT
*
32109971 TCTTAGACA-TGGAATGAACTCTGTAT
1 TCTTAGA-ATTGGAATGAACTATGTAT
32109997 GCCTAAGCCA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.33, C:0.12, G:0.19, T:0.37
Consensus pattern (26 bp):
TCTTAGAATTGGAATGAACTATGTAT
Found at i:32110171 original size:26 final size:26
Alignment explanation
Indices: 32110130--32110182 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32110120 CTGGTCTGAT
32110130 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
32110156 CTTAGACTAGGG-ATGAACTCTGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
32110182 C
1 C
32110183 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:32111179 original size:26 final size:26
Alignment explanation
Indices: 32111138--32111190 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
32111128 CCAGTCTGAT
32111138 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
32111164 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
32111190 C
1 C
32111191 CCAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:32111909 original size:26 final size:26
Alignment explanation
Indices: 32111871--32111923 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32111861 GGCTCAAACT
*
32111871 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
32111897 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
32111923 C
1 C
32111924 CTAAGCCAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:32112956 original size:26 final size:26
Alignment explanation
Indices: 32112918--32112970 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
32112908 GGCTCAAACT
32112918 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
32112944 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
32112970 C
1 C
32112971 CTAAGGCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:32114452 original size:26 final size:26
Alignment explanation
Indices: 32114410--32114460 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
32114400 CCGGTCCGAT
*
32114410 CTTAGACTGGGACTGAACTCAGTATG
1 CTTAGACTGGGAATGAACTCAGTATG
*
32114436 CTTAGACAT-GGAATGAACTCCGTAT
1 CTTAGAC-TGGGAATGAACTCAGTAT
32114461 ACCTAAGCCA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCAGTATG
Found at i:32114940 original size:26 final size:26
Alignment explanation
Indices: 32114911--32114963 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
32114901 CCGGTCCAAT
32114911 CTTAGAATGGGAATGAACTCCATATG
1 CTTAGAATGGGAATGAACTCCATATG
* *
32114937 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGAATGGGAATGAACTCCATATG
32114963 C
1 C
32114964 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCATATG
Found at i:32115650 original size:26 final size:26
Alignment explanation
Indices: 32115612--32115664 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32115602 GGCTAAAACT
32115612 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
32115638 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
32115664 C
1 C
32115665 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:32116202 original size:26 final size:26
Alignment explanation
Indices: 32116163--32116215 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32116153 CTGATCCGAT
*
32116163 CTTAGACATTGAATGAACT-TCGTATG
1 CTTAGACATGGAATGAACTCT-GTATG
32116189 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCTGTATG
32116215 C
1 C
32116216 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.32
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCTGTATG
Found at i:32116603 original size:26 final size:26
Alignment explanation
Indices: 32116551--32116603 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
32116541 CCGGTCCAAT
** *
32116551 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCGAATG
*
32116577 CTTAGACAAGGAATGAACTTCGAATG
1 CTTAGACAAGGAATGAACTCCGAATG
32116603 C
1 C
32116604 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.19, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACAAGGAATGAACTCCGAATG
Found at i:32116835 original size:159 final size:159
Alignment explanation
Indices: 32116576--32117042 Score: 489
Period size: 159 Copynumber: 2.9 Consensus size: 159
32116566 AACTCCGTAT
* ** * * *
32116576 GCTTAGACA-AGGAATGAACTTCGAATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTTA
1 GCTTAGACATA-GAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTACGGGCGCTCA
** *
32116640 ACCGGCCGAAGAGGCAGAATGCACAAGCCGAGGATCATCCT-GGTCCCCTTCTGCGTGCTG-CTG
65 GTCGGCCGAAGAGGCAGAATGCACAAGCCGAGGATCA-CCTCGGTCCCCCTCTGCGTGCTGTC-G
*
32116703 GTCCCGCTGCCACAACCCTCAGTCCGGCTGGG
128 ATCCCGCTGCCACAACCCTCAGTCCGGCTGGG
* **
32116735 GCTTAGACATAGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGGGGGCGCTCAG
1 GCTTAGACATAGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTACGGGCGCTCAG
* * * * *
32116800 TCGGTCGGAGAGTCATAATGC-CTAAGCCG-GCGATCAGCTCGGTCCCCCTCTGCGTGCTGTCGA
66 TCGGCCGAAGAGGCAGAATGCAC-AAGCCGAG-GATCACCTCGGTCCCCCTCTGCGTGCTGTCGA
* * * *
32116863 TCCCGCTGCCATAACCCTCGGTTCGGTTGGG
129 TCCCGCTGCCACAACCCTCAGTCCGGCTGGG
* * * *
32116894 GCTTAGAGATGGAATGAACTCCCTATGCCTAAGCAAACCCACGAAACGGGCGTACAGGCGCTCAG
1 GCTTAGACATAGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTACGGGCGCTCAG
** * * * * * *
32116959 TCACCCGGAGAGGCAGAATGCGCAAGCTGGGGATCGA-CTCGATCCCCC-CTGCGTGCTGCCGAT
66 TCGGCCGAAGAGGCAGAATGCACAAGCCGAGGATC-ACCTCGGTCCCCCTCTGCGTGCTGTCGAT
** **
32117022 CTTGCTGCTGCAACCCTCAGT
130 CCCGCTGCCACAACCCTCAGT
32117043 TCGATCCGAT
Statistics
Matches: 257, Mismatches: 43, Indels: 17
0.81 0.14 0.05
Matches are distributed among these distances:
158 33 0.13
159 219 0.85
160 5 0.02
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.18
Consensus pattern (159 bp):
GCTTAGACATAGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTACGGGCGCTCAG
TCGGCCGAAGAGGCAGAATGCACAAGCCGAGGATCACCTCGGTCCCCCTCTGCGTGCTGTCGATC
CCGCTGCCACAACCCTCAGTCCGGCTGGG
Found at i:32117817 original size:26 final size:26
Alignment explanation
Indices: 32117775--32117827 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32117765 GGCTCAAAAT
32117775 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
32117801 CTTAGACAT-GGATTGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
32117827 C
1 C
32117828 CTAAACCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:32118156 original size:159 final size:158
Alignment explanation
Indices: 32117800--32118246 Score: 445
Period size: 159 Copynumber: 2.8 Consensus size: 158
32117790 AACTCCGTAT
* * * * * *
32117800 GCTTAGACATGGATTGAACTCCGTATGCCTAAACCAACCCACGAAACGAGCGTACGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGTTCAG
* * *
32117865 CCAGTCGGAGAGGCAGAATGCACAAGCCGGGGATCGACCCGGTCCCCCCTACGTGCTGTCGATCC
66 CCAGCCGAAGAGGCAGAATGCACAAGCCGGGGATCGACCCGATCCCCCCTACGTGCTGTCGATCC
** * * *
32117930 TGCTATCACAACCCTCAGTCTGGTCTGA
131 CACTACCAAAACCCTCAGTCCGGTCTGA
* * ** * *
32117958 TCTTAGAC-TAGGAATGAACTCCGTATGCATAAGTGAACCCATGAAATGAGCGTGCGGGCGTTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGTTCA
** * ** * * * *
32118022 GCTGGCCGAAGAGGCATAATGTGCAAGCCGGGGATCGGCCCGATCCCCCTTTGCGTGCTG-CTGG
65 GCCAGCCGAAGAGGCAGAATGCACAAGCCGGGGATCGACCCGATCCCCC-CTACGTGCTGTC-GA
*
32118086 TCCCACTACCAAAACCCTCAGTCCGG-CTGGG
128 TCCCACTACCAAAACCCTCAGTCCGGTCT-GA
* * * *
32118117 GCTTAGACATGGAATGAAGTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGTTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGTTCAG
* * * * * *
32118182 CC-GACCGGAGAGGCAGAATACGCAAGTCGGGGATCGACCCG-GCCCCTCCTGCGTGCTGTCGAT
66 CCAG-CCGAAGAGGCAGAATGCACAAGCCGGGGATCGACCCGATCCCC-CCTACGTGCTGTCGAT
32118245 CC
129 CC
32118247 TGCTACCGCA
Statistics
Matches: 231, Mismatches: 50, Indels: 16
0.78 0.17 0.05
Matches are distributed among these distances:
157 1 0.00
158 111 0.48
159 118 0.51
160 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGTTCAG
CCAGCCGAAGAGGCAGAATGCACAAGCCGGGGATCGACCCGATCCCCCCTACGTGCTGTCGATCC
CACTACCAAAACCCTCAGTCCGGTCTGA
Found at i:32118326 original size:26 final size:26
Alignment explanation
Indices: 32118278--32118328 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
32118268 AGTCCGATTG
**
32118278 TAGACTGGGAATGAACTTTGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
32118304 TAGACT-GGAGATGAACTCCGTATGC
1 TAGACTGGGA-ATGAACTCCGTATGC
32118329 CAAAGTCAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 3 0.14
26 19 0.86
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.29
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:32119452 original size:158 final size:157
Alignment explanation
Indices: 32119026--32119470 Score: 449
Period size: 157 Copynumber: 2.8 Consensus size: 157
32119016 AACTCTGTAT
* *
32119026 GCTTAGACATGG-ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
* *
32119090 CCAGCCGGAA-AGGAAGAATGCACAAGTCGGGGATCGGCCTGGTCCCCCCTGCGTGCTGTCGATC
66 CCAGCC-GAAGAGGCAGAATGCACAAGTCGGGGATCGGCCCGG-CCCCCCTGCGTGCTGTCGATC
* * * *
32119154 CTACTATCACAACCCTCAGTCTGGTCCGA
129 CCACTATCACAACCCCCAGTCCGCTCCGA
* * ** * * *
32119183 TCTTAGAC-TAGGAATGAA-TCCGTATGCATAAGTGAACCCATGAAACGAGCGTACGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * ** * * * * *
32119246 GCTAGCCGAAGAGGCATAATGCGCAAACCGGAGACCGACCCGATCCCCCTCTGCGTGCTG-CTGG
65 ACCAGCCGAAGAGGCAGAATGCACAAGTCGGGGATCGGCCCG-GCCCCC-CTGCGTGCTGTC-GA
* * * *
32119310 TCCCGCT-GCTACAACCCCCAGTCCGACT-GGG
127 TCCCACTATC-ACAACCCCCAGTCCG-CTCCGA
*
32119341 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACG-GACGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAG-CGTGCGGGCGCTCA
32119405 ACC-GACCGAAGAGGCAGAATGCACAAGTCGGGGATCGGCCCGGCCCCCCCTGCGTGCTGTCGAT
65 ACCAG-CCGAAGAGGCAGAATGCACAAGTCGGGGATCGGCCCGG-CCCCCCTGCGTGCTGTCGAT
32119469 CC
128 CC
32119471 TGCTACCGCA
Statistics
Matches: 227, Mismatches: 47, Indels: 27
0.75 0.16 0.09
Matches are distributed among these distances:
156 4 0.02
157 82 0.36
158 66 0.29
159 75 0.33
ACGTcount: A:0.24, C:0.32, G:0.28, T:0.16
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
CCAGCCGAAGAGGCAGAATGCACAAGTCGGGGATCGGCCCGGCCCCCCTGCGTGCTGTCGATCCC
ACTATCACAACCCCCAGTCCGCTCCGA
Found at i:32119483 original size:158 final size:158
Alignment explanation
Indices: 32119026--32119526 Score: 475
Period size: 158 Copynumber: 3.2 Consensus size: 158
32119016 AACTCTGTAT
* *
32119026 GCTTAGACATGG-ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
* * *
32119090 CCAGCCGGAA-AGGAAGAATGCACAAGTCGGGGATCGGCCTGGTCCCCCCTGCGTGCTGTCGATC
66 CCAGCC-GAAGAGGCAGAATGCACAAGTCGGGGATCGGCCCGGCCCCCCCTGCGTGCTGTCGATC
* * * * *
32119154 CTACTATCACAACCCTCAGTCTGGTCCGA
130 CTGCTACCACAACCCCCAGTCCGCTCCGA
* * ** * * *
32119183 TCTTAGAC-TAGGAATGAA-TCCGTATGCATAAGTGAACCCATGAAACGAGCGTACGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * ** * * * * * *
32119246 GCTAGCCGAAGAGGCATAATGCGCAAACCGGAGACCGACCCGATCCCCCTCTGCGTGCTG-CTGG
65 ACCAGCCGAAGAGGCAGAATGCACAAGTCGGGGATCGGCCCG-GCCCCCCCTGCGTGCTGTC-GA
* * * * *
32119310 TCCCGCTGCTACAACCCCCAGTCCGACT-GGG
128 TCCTGCTACCACAACCCCCAGTCCG-CTCCGA
*
32119341 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACG-GACGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAG-CGTGCGGGCGCTCA
32119405 ACC-GACCGAAGAGGCAGAATGCACAAGTCGGGGATCGGCCCGGCCCCCCCTGCGTGCTGTCGAT
65 ACCAG-CCGAAGAGGCAGAATGCACAAGTCGGGGATCGGCCCGGCCCCCCCTGCGTGCTGTCGAT
* *
32119469 CCTGCTACCGCAACCCTC-GATCCAG-TCCGA
129 CCTGCTACCACAACCCCCAG-TCC-GCTCCGA
* * *
32119499 TCTTAGAC-TGGGAATGCACTTCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
32119527 TTAGACTGGG
Statistics
Matches: 266, Mismatches: 63, Indels: 29
0.74 0.18 0.08
Matches are distributed among these distances:
156 4 0.02
157 79 0.30
158 112 0.42
159 71 0.27
ACGTcount: A:0.24, C:0.32, G:0.27, T:0.17
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
CCAGCCGAAGAGGCAGAATGCACAAGTCGGGGATCGGCCCGGCCCCCCCTGCGTGCTGTCGATCC
TGCTACCACAACCCCCAGTCCGCTCCGA
Found at i:32119536 original size:26 final size:26
Alignment explanation
Indices: 32119500--32119552 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
32119490 CCAGTCCGAT
* *
32119500 CTTAGACTGGGAATGCACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
32119526 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
32119552 C
1 C
32119553 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:32120162 original size:11 final size:11
Alignment explanation
Indices: 32120131--32120156 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
32120121 GGTTAGGCTT
32120131 TCCGACGATGC
1 TCCGACGATGC
32120142 TCCGACGATGC
1 TCCGACGATGC
32120153 TCCG
1 TCCG
32120157 GTGATGGTGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.15, C:0.38, G:0.27, T:0.19
Consensus pattern (11 bp):
TCCGACGATGC
Found at i:32120270 original size:26 final size:25
Alignment explanation
Indices: 32120231--32120282 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
32120221 GGCTCAAACT
*
32120231 CTTAGACTGGAATGTACTCCGTATG
1 CTTAGACTGGAATGAACTCCGTATG
*
32120256 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGAC-TGGAATGAACTCCGTATG
32120282 C
1 C
32120283 CTAAGCTAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.31
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTCCGTATG
Found at i:32120954 original size:26 final size:26
Alignment explanation
Indices: 32120925--32120977 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
32120915 CCAATCTGAT
32120925 CTTAGAC-TGGGAATGAACT-CTGTATG
1 CTTAGACAT-GGAATGAACTAC-GTATG
32120951 CTTAGACATGGAATGAACTACGTATG
1 CTTAGACATGGAATGAACTACGTATG
32120977 C
1 C
32120978 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTACGTATG
Found at i:32121616 original size:158 final size:158
Alignment explanation
Indices: 32121157--32121659 Score: 455
Period size: 158 Copynumber: 3.2 Consensus size: 158
32121147 AACTCCATAT
* * * * *
32121157 GCTTAGACATGGAATGAACT-CTGCATGCCTAAGCCAACCCATAAAACGAGCGTACGGGCGCTTA
1 GCTTAGACATGGAATGAACTCCT-TATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCA
* * *
32121221 GCCGGTCGGAGAGGTAGAATGCGCAAG-CTG-GGAAT-GGACCCGGTCCTCCCATGCATGCTGTC
65 GCCGGTCGAAGAGGCAGAATGCGCAAGTC-GAGG-ATCGG-CCCGGTCC-CCCCTGCATGCTGTC
* * *
32121283 AATCCTGCTATCGTAACCCTCGGTCTGATCTGA
126 GATCCTGCTATCGCAACCCTCGGTCCGATCTGA
* * * * * * * * *
32121316 TCTTAGACAGGGAATGAACTCCGTATGCCTAGGTCAACCCACGAAATAAGTGTGCGGG-GACTGA
1 GCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCG-CTCA
** * * * * *
32121380 GCCAATCGAAAAGGCATAATACGCAAGTCGAGGATCGGCCCGGTCCCACTCTGC-TGCTGTCGGT
65 GCCGGTCGAAGAGGCAGAATGCGCAAGTCGAGGATCGGCCCGGTCCC-CCCTGCATGCTGTCGAT
* ** * *
32121444 CCCGCTGCCACAACCCTCGGTCCGA-CTGGG
129 CCTGCTATCGCAACCCTCGGTCCGATCT-GA
* *
32121474 GCTTAGACATGGAATTAACTCCTTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
* * * * *
32121539 TCGGCCGAAGAGGCAGAATGCGCAAGTCGAGGATCGGCCCGATCCCCCCTGCATGCTGCCGATCT
66 CCGGTCGAAGAGGCAGAATGCGCAAGTCGAGGATCGGCCCGGTCCCCCCTGCATGCTGTCGATCC
* * * * *
32121604 TACTATTGCAACCCTCGATCTGGTCTGA
131 TGCTATCGCAACCCTCGGTCCGATCTGA
* *
32121632 TCTTAGAC-TGGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCTTATGC
32121660 TTAGCCGACA
Statistics
Matches: 266, Mismatches: 67, Indels: 23
0.75 0.19 0.06
Matches are distributed among these distances:
157 8 0.03
158 167 0.63
159 85 0.32
160 6 0.02
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
CCGGTCGAAGAGGCAGAATGCGCAAGTCGAGGATCGGCCCGGTCCCCCCTGCATGCTGTCGATCC
TGCTATCGCAACCCTCGGTCCGATCTGA
Found at i:32122894 original size:26 final size:26
Alignment explanation
Indices: 32122853--32122905 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32122843 CCGGTTTGAT
*
32122853 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
32122879 CTTAGACTCGGG-ATGAACTCCATATG
1 CTTAGACT-GGGAATGAACTCCATATG
32122905 C
1 C
32122906 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:32122898 original size:501 final size:500
Alignment explanation
Indices: 32121879--32123013 Score: 1315
Period size: 501 Copynumber: 2.3 Consensus size: 500
32121869 CCAAATTTGG
* * ** *
32121879 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGGGCGTGCAGGCGCCCAGCCG
1 TAGACATCGAATGAACTCCATATGCCTAAGCCAA-CCATGAAACGAACGTGCGGGCGCCCAGCCG
* * * * * *
32121944 GTCGGAGAGACAGAATGCGCAAGCCGAGGATCGGCCTAATCCCCCCTGCGTGCTACCGATCTTGC
65 ATCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCAATCCCCCCTACGTGCTACCGATCCTAC
* *
32122009 TGCCGTAACCCTCAGTTCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
130 TACCGCAACCCTCAGTTCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * * *
32122074 ACAAAACGAGCGTTCCGGCGCTGAGCCAACCGGAGAGGCATAATGTGCAAACCGGGGATCGGCCC
195 ACAAAACAAACGTTCAGGCGCTGAGCCAACCGGAGAGCCATAATGCGCAAACCGGGGATCGGCCC
* * * * * * * *
32122139 GATCTCACTCTACGTGCTATCGGTCCCGCTGCCATAACCCTTGATCCGGCTGGGGCTTAGGCATG
260 GATCCCACTCTACGTGCTACCGATCCCGCTACCACAACCCTCGATCCGACTGGGGCTTAGACATG
*
32122204 GAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCAGGCGCTCAACCGATCGAAGA
325 GAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCAGGCGCTCAACCGACCGAAGA
* * * * * * *
32122269 GGTAGAATGCGCAAGCCGGGGATCGGCCTGATCCCCCCTGCGTGCGGTTGATCCTGCTGTCACAA
390 GGCAGAATGCACAAGCCGAGGATCAGCCTGATCCCCCCTACGTGCGGTCGATCCTGCTGCCACAA
** * *
32122334 CCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTTCGTATGCT
455 CCCTCGACCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCT
* *
32122380 TAGACATCGAATGAACTCCATATGCCTAAGCCAACGCATGAAATGAACGTGCGGGCGCTCAGCCG
1 TAGACATCGAATGAACTCCATATGCCTAAGCCAAC-CATGAAACGAACGTGCGGGCGCCCAGCCG
* * * * * * ** *
32122445 ATCGGAGAGGTAGAATGCGTAAGCTGGGGATTGGCCCGATCCCGCCCTACGTGCTGTCTATCCTA
65 ATCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCAATCCC-CCCTACGTGCTACCGATCCTA
* * *
32122510 CTATCGCAACCCTC-GGTCTGGTCCAATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAAC
129 CTACCGCAACCCTCAGTTC-GGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * * **
32122574 CCACGAAACAAACGTTCAGGCGCTGAGCCGATCGGAGAGCCATAATGCGCAAGTCGGGGATCGGC
193 CCACAAAACAAACGTTCAGGCGCTGAGCCAACCGGAGAGCCATAATGCGCAAACCGGGGATCGGC
* * * *** * * *
32122639 CTGGTCCCCCTCTGTTTGCTACCGATCTCGCTACCACAAGCCTCGATCCGACTGGTGCTTAGACA
258 CCGATCCCACTCTACGTGCTACCGATCCCGCTACCACAACCCTCGATCCGACTGGGGCTTAGACA
* * * * * * * *
32122704 TGGAATGAACTCCCTATGCCTAAGCCAACCCATGTAATGGGCGTGCGGGTGCTC-AGCGGCCGGA
323 TGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCAGGCGCTCAACCGACCGAA
* *
32122768 GAGGCAGAATGCACAAGCCGAGGATCAG-CTCGGTCCCCCCTACGTGCTGTCGATCCTGCTGCCA
388 GAGGCAGAATGCACAAGCCGAGGATCAGCCT-GATCCCCCCTACGTGCGGTCGATCCTGCTGCCA
* * **
32122832 CAACCCTCTACCCGGTTTGATCTTAGACTGGGAATGAACTCCGTATGCT
452 CAACCCTCGACCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCT
* * * *
32122881 TAGAC-TCGGGATGAACTCCATATGCCTAAGTCAACCAATGAAACGAACGTACGGGCGCCCAGCT
1 TAGACATC-GAATGAACTCCATATGCCTAAGCCAACC-ATGAAACGAACGTGCGGGCGCCCAGCC
* * ** * * *** * * *
32122945 GACCGAAGAGGCAGAATGCATAACCCGAGGATCAGCTTGATCCCCCCTACATGCTGCCGATCCTG
64 GATCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCAATCCCCCCTACGTGCTACCGATCCTA
32123010 CTAC
129 CTAC
32123014 TGCTCCTGCT
Statistics
Matches: 526, Mismatches: 102, Indels: 13
0.82 0.16 0.02
Matches are distributed among these distances:
500 26 0.05
501 278 0.53
502 222 0.42
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (500 bp):
TAGACATCGAATGAACTCCATATGCCTAAGCCAACCATGAAACGAACGTGCGGGCGCCCAGCCGA
TCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCAATCCCCCCTACGTGCTACCGATCCTACT
ACCGCAACCCTCAGTTCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
CAAAACAAACGTTCAGGCGCTGAGCCAACCGGAGAGCCATAATGCGCAAACCGGGGATCGGCCCG
ATCCCACTCTACGTGCTACCGATCCCGCTACCACAACCCTCGATCCGACTGGGGCTTAGACATGG
AATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCAGGCGCTCAACCGACCGAAGAG
GCAGAATGCACAAGCCGAGGATCAGCCTGATCCCCCCTACGTGCGGTCGATCCTGCTGCCACAAC
CCTCGACCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCT
Found at i:32123008 original size:184 final size:187
Alignment explanation
Indices: 32122694--32123186 Score: 494
Period size: 196 Copynumber: 2.6 Consensus size: 187
32122684 ATCCGACTGG
* * * * * ** * * *
32122694 TGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGTAATGGGCGTGCGGGTGCTCA
1 TGCTTAGAC-TGGGATGAACTCCATATGCCTAAGTCAACCCATGAAACGAACGTACGGGCGCCCA
* * * * * *
32122759 GCGGCCGGAGAGGCAGAATGCACAAGCCGAGGATCAGCTCGGTCCCCCCTACGTGCTGTCGA-T-
65 GCGACCGAAGAGGCAGAATGCACAACCCGAGGATCAGCTCGATCCCCCCTACATGCTGCCGACTG
* *
32122822 C-CTG-CTGC-CACAACCCTCTACCCGGTTTGATCTTAGACTGGGAATGAACTCCGTA
130 CACTGCCTGCTCACAACCCTCGACCCGGTCTGATCTTAGACTGGGAATGAACTCCGTA
*
32122877 TGCTTAGACTCGGGATGAACTCCATATGCCTAAGTCAACCAATGAAACGAACGTACGGGCGCCCA
1 TGCTTAGACT-GGGATGAACTCCATATGCCTAAGTCAACCCATGAAACGAACGTACGGGCGCCCA
* *
32122942 GCTGACCGAAGAGGCAGAATGCATAACCCGAGGATCAGCTTGATCCCCCCTACATGCTGCCGATC
65 GC-GACCGAAGAGGCAGAATGCACAACCCGAGGATCAGCTCGATCCCCCCTACATGCTGCCGA--
* * *
32123007 CTGCTACTGCTCCTGCTATCACAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCTGT
127 CTGC-ACTG--CCTGC--TCACAACCCTCGACCCGGTCTGATCTTAGACTGGGAATGAACTCCGT
32123072 A
187 A
** * * * * *
32123073 TGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCATGCGGGCACTCA
1 TGCTTAGACT-GGGATGAACTCCATATGCCTAAGTCAACCCATGAAACGAACGTACGGGCGCCCA
* * ** * *
32123138 GTCGATCGGAA-AGGCATAATGCGTAAGCCGAGGATCAGCTCGGTCCCCC
65 G-CGA-CCGAAGAGGCAGAATGCACAACCCGAGGATCAGCTCGATCCCCC
32123187 TCTGCGTGCT
Statistics
Matches: 255, Mismatches: 39, Indels: 19
0.81 0.12 0.06
Matches are distributed among these distances:
182 1 0.00
183 54 0.21
184 52 0.20
187 1 0.00
188 1 0.00
190 3 0.01
193 4 0.02
196 134 0.53
197 5 0.02
ACGTcount: A:0.25, C:0.29, G:0.25, T:0.21
Consensus pattern (187 bp):
TGCTTAGACTGGGATGAACTCCATATGCCTAAGTCAACCCATGAAACGAACGTACGGGCGCCCAG
CGACCGAAGAGGCAGAATGCACAACCCGAGGATCAGCTCGATCCCCCCTACATGCTGCCGACTGC
ACTGCCTGCTCACAACCCTCGACCCGGTCTGATCTTAGACTGGGAATGAACTCCGTA
Found at i:32123078 original size:26 final size:26
Alignment explanation
Indices: 32123049--32123101 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
32123039 CTGGTCTGAT
32123049 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
32123075 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
32123101 C
1 C
32123102 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:32123171 original size:196 final size:196
Alignment explanation
Indices: 32122821--32123186 Score: 502
Period size: 196 Copynumber: 1.9 Consensus size: 196
32122811 GTGCTGTCGA
* * *
32122821 TCCTGCTGCCACAACCCTCTACCCGGTTTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
1 TCCTGCTACCACAACCCTCGACCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
* *
32122886 TCGGGATGAACTCCATATGCCTAAGTCAACCAATGAAACGAACGTACGGGCGCCCAGCTGACCGA
66 TCGGGATGAACTCCATATGCCTAAGTCAACCAATGAAACGAACATACGGGCACCCAGCTGACCGA
*
32122951 AGAGGCAGAATGCATAACCCGAGGATCAGCTTGATCCCCCCTACATGCTGCCGATCCTGCTACTG
131 AGAGGCAGAATGCATAACCCGAGGATCAGCTCGATCCCCCCTACATGCTGCCGATCCTGCTACTG
32123016 C
196 C
* * * *
32123017 TCCTGCTATCACAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGAC
1 TCCTGCTACCACAACCCTCGACCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
* ** * * * * *
32123082 TGGGGATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCATGCGGGCACTCAG-TCGATCG
66 TCGGGATGAACTCCATATGCCTAAGTCAACCAATGAAACGAACATACGGGCACCCAGCT-GA-CC
* * * *
32123146 GAA-AGGCATAATGCGTAAGCCGAGGATCAGCTCGGTCCCCC
129 GAAGAGGCAGAATGCATAACCCGAGGATCAGCTCGATCCCCC
32123187 TCTGCGTGCT
Statistics
Matches: 146, Mismatches: 22, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
195 1 0.01
196 141 0.97
197 4 0.03
ACGTcount: A:0.25, C:0.29, G:0.24, T:0.22
Consensus pattern (196 bp):
TCCTGCTACCACAACCCTCGACCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
TCGGGATGAACTCCATATGCCTAAGTCAACCAATGAAACGAACATACGGGCACCCAGCTGACCGA
AGAGGCAGAATGCATAACCCGAGGATCAGCTCGATCCCCCCTACATGCTGCCGATCCTGCTACTG
C
Found at i:32124678 original size:26 final size:26
Alignment explanation
Indices: 32124642--32124694 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
32124632 TTGGTCTGAT
*
32124642 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
32124668 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
32124694 C
1 C
32124695 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:32125679 original size:26 final size:26
Alignment explanation
Indices: 32125650--32125705 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
32125640 CCGATCCAAT
*
32125650 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
32125676 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
32125702 CTTA
1 CTTA
32125706 ACTCAACCCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:32126069 original size:158 final size:157
Alignment explanation
Indices: 32125675--32126494 Score: 562
Period size: 159 Copynumber: 5.2 Consensus size: 157
32125665 AACTCCATAT
* * *
32125675 GCTTAGAC-TGGGAATGAACTCCGTATGCTTAA-CTCAACCCATGAAACGAGTGTGCGGGCGCTG
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGC-CAACCCATGAAACGAGCGTGCGGGCGCTC
* * ** ** * * *
32125738 AGCCGGCCGGAGAGGCATAATGCATAAGTTGGGGATCGGCCCGGTCCCTTTCTACGTGCTACCGG
64 AG-CGGCCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCGGTCCC-CCCTGCGTGCTATCGA
* ** * * *
32125803 T-CTCACTGCCACAACCCTCAATTCGGTTGGG
127 TCCT-GCTGCCACAACCCTCGGTCCGATCGGG
* * * * * **
32125834 GCTTAGACATGGAATCAACTCCGTATGCCTAAGCCAACCTACGAAATGAGCATGCGGGAACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
** * ** *
32125899 CCAACCGGAGAGGCAGAATGCGTAAGCCAGGGATCGGCCCAATCCCCCCTGCATGCTATCGATCC
66 -CGGCCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTATCGATCC
* * * * *
32125964 TGCTGTCGCAACCCTCGGTCTGATCCGA
130 TGCTGCCACAACCCTCGGTCCGATCGGG
* * * * *
32125992 TCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTGCGGGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
** * * * * * * *
32126056 GCGGGCCAAAGAGGCATAATGCGTAAACCGGGGATTGGTCCGGTCCCCCTCTTCGTGCTGTCGGT
65 GC-GGCCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCGGTCCCCC-CTGCGTGCTATCGAT
* * *
32126121 CCCGCTGCCACAACCCTCGGTTCG-GCTGGG
128 CCTGCTGCCACAACCCTCGGTCCGATC-GGG
* * * * * * * *
32126151 GCTTAAACATGAAATGATCTCCCTATGCCTAAGCCAACCCAGGAAACGAGCGTACAGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTC-A
* * * * * * * * * * *
32126216 TCAGTCGAAGAGGCAGAATACGCAAGTCGGGGATCGGCCCGATCCCCCCTGTGTGTTGTCGATCC
65 GCGGCCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTATCGATCC
* * *
32126281 CGCTG-CACAACCCTCGATCCG-GCTGGG
130 TGCTGCCACAACCCTCGGTCCGATC-GGG
* * * *
32126308 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAC-AGGCGTGTAGAGCACTC
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGA-GCGTG-CGGGCGCTC
* * * *** * * *
32126372 AGTCGACCAGAGAGGCAAAATGTACAAGCCAGGGATCAGCCCGGTCCCCCCTGCGTGCTACCGAT
64 AG-CGGCCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTATCGAT
* ** ** **
32126437 CCTACTTTCGTAACCCTCGGTCCGATCCGAT
128 CCTGCTGCCACAACCCTCGGTCCGAT-CGGG
32126468 G-TTAGAC-TGGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
32126495 TTAGATTGGA
Statistics
Matches: 508, Mismatches: 137, Indels: 32
0.75 0.20 0.05
Matches are distributed among these distances:
156 1 0.00
157 70 0.14
158 187 0.37
159 242 0.48
160 7 0.01
161 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
CGGCCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTATCGATCCT
GCTGCCACAACCCTCGGTCCGATCGGG
Found at i:32126197 original size:159 final size:158
Alignment explanation
Indices: 32125675--32126354 Score: 598
Period size: 159 Copynumber: 4.3 Consensus size: 158
32125665 AACTCCATAT
* * *
32125675 GCTTAGAC-TGGGAATGAACTCCGTATGCTTAA-CTCAACCCATGAAACGAGTGTGCGGGCGCTG
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGC-CAACCCATGAAACGAGCGTGCGGGTGCTG
* * * * ** * ** * * *
32125738 AGCCGGCCGGAGAGGCATAATGCATAAGTTGGGGATCGGCCCGGTCCCTTTCTACGTGCTACCGG
64 AGCCAGCCGAAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCGATCCC-CCCTTCGTGCTATCGA
* * * *
32125803 TCTCACTGCCACAACCCTCAATTCGGTTGGG
128 TCCCGCTGCCACAACCCTCGATTCGGCTGGG
* * * * * ** *
32125834 GCTTAGACATGGAATCAACTCCGTATGCCTAAGCCAACCTACGAAATGAGCATGCGGGAACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTGAG
* * * * * *
32125899 CCAACCGGAGAGGCAGAATGCGTAAGCCAGGGATCGGCCCAATCCCCCCTGCATGCTATCGATCC
66 CCAGCCGAAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCGATCCCCCCTTCGTGCTATCGATCC
* * * * * * * *
32125964 TGCTGTCGCAACCCTCG-GTCTGATCCGA
131 CGCTGCCACAACCCTCGATTCGGCT-GGG
* * *
32125992 TCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTGCGGGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTGA
** * * * * * * * *
32126056 GCGGGCCAAAGAGGCATAATGCGTAAACCGGGGATTGGTCCGGTCCCCCTCTTCGTGCTGTCGGT
65 GCCAGCCGAAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCGATCCCCC-CTTCGTGCTATCGAT
*
32126121 CCCGCTGCCACAACCCTCGGTTCGGCTGGG
129 CCCGCTGCCACAACCCTCGATTCGGCTGGG
* * * * * * * * *
32126151 GCTTAAACATGAAATGATCTCCCTATGCCTAAGCCAACCCAGGAAACGAGCGTACAGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTGAG
* * * * * * *
32126216 TCAGTCGAAGAGGCAGAATACGCAAGTCGGGGATCGGCCCGATCCCCCCTGT-GTGTTGTCGATC
66 CCAGCCGAAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCGATCCCCCCT-TCGTGCTATCGATC
*
32126280 CCGCTG-CACAACCCTCGATCCGGCTGGG
130 CCGCTGCCACAACCCTCGATTCGGCTGGG
*
32126308 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAC
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAC
32126355 AGGCGTGTAG
Statistics
Matches: 409, Mismatches: 104, Indels: 18
0.77 0.20 0.03
Matches are distributed among these distances:
157 68 0.17
158 131 0.32
159 203 0.50
160 7 0.02
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTGAG
CCAGCCGAAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCGATCCCCCCTTCGTGCTATCGATCC
CGCTGCCACAACCCTCGATTCGGCTGGG
Found at i:32126251 original size:317 final size:316
Alignment explanation
Indices: 32125675--32126434 Score: 772
Period size: 317 Copynumber: 2.4 Consensus size: 316
32125665 AACTCCATAT
* * *
32125675 GCTTAGACTGGGAATGAACTCCGTATGCTTAACTCAACCCATGAAACGAGTGTGCGGGCGCTGAG
1 GCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTGCGGGCGCTGAG
** *** **
32125740 CCGGCCGGAGAGGCATAATGCATAAGTTGGGGATCGGCCCGGTCCCTTTCTACGTGCTACCGGTC
66 CCGGCCAAAGAGGCATAATGCATAAACCGGGGATCGGCCCGGTCCCCCTCTACGTGCTACCGGTC
* * * * *
32125805 TCACTGCCACAACCCTCAATTCGGTTGGGGCTTAGACATGGAATCAACTCCGTATGCCTAAGCCA
131 CCACTGCCACAACCCTCAATTCGGCTGGGGCTTAAACATGAAATCAACTCCCTATGCCTAAGCCA
* * * * * * * *
32125870 ACCTACGAAATGAGCATGCGGGAACTCAGCCAACCGGAGAGGCAGAATGCGTAAGCCAGGGATCG
196 ACCCACGAAACGAGCATACAGGAACTCAACCAACCGAAGAGGCAGAATACGCAAGCCAGGGATCG
* * * * *
32125935 GCCCAATCCCCCCTGCATGCTATCGATCCTGCTGTCGCAACCCTCGGT-CTGATCCGA
261 GCCCAATCCCCCCTGCATGCTATCGATCCCGCTG-CACAACCCTCGATCCGGCT-CGA
* *
32125992 TCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTGCGGGTGCTGAG
1 GCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTGCGGGCGCTGAG
* * * * * **
32126057 CGGGCCAAAGAGGCATAATGCGTAAACCGGGGATTGGTCCGGTCCCCCTCTTCGTGCTGTCGGTC
66 CCGGCCAAAGAGGCATAATGCATAAACCGGGGATCGGCCCGGTCCCCCTCTACGTGCTACCGGTC
* ** * *
32126122 CCGCTGCCACAACCCTCGGTTCGGCTGGGGCTTAAACATGAAATGATCTCCCTATGCCTAAGCCA
131 CCACTGCCACAACCCTCAATTCGGCTGGGGCTTAAACATGAAATCAACTCCCTATGCCTAAGCCA
* * ** * ** * *
32126187 ACCCAGGAAACGAGCGTACAGGTGCTCAATCAGTCGAAGAGGCAGAATACGCAAGTCGGGGATCG
196 ACCCACGAAACGAGCATACAGGAACTCAACCAACCGAAGAGGCAGAATACGCAAGCCAGGGATCG
* ** * * * *
32126252 GCCCGATCCCCCCTGTGTGTTGTCGATCCCGCTGCACAACCCTCGATCCGGCTGGG
261 GCCCAATCCCCCCTGCATGCTATCGATCCCGCTGCACAACCCTCGATCCGGCTCGA
* * * * * *
32126308 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAC-AGGCGTGTAGAGCACT
1 GCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGA-GCGTG-CGGGCGCT
* * * * * * * * * * *
32126371 CAGTCGACCAGAGAGGCAAAATGTACAAGCCAGGGATCAGCCCGGTCCCCC-CTGCGTGCTACCG
63 GAGCCGGCCAAAGAGGCATAATGCATAAACCGGGGATCGGCCCGGTCCCCCTCTACGTGCTACCG
32126435 ATCCTACTTT
Statistics
Matches: 356, Mismatches: 83, Indels: 9
0.79 0.19 0.02
Matches are distributed among these distances:
315 1 0.00
316 68 0.19
317 287 0.81
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (316 bp):
GCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTGCGGGCGCTGAG
CCGGCCAAAGAGGCATAATGCATAAACCGGGGATCGGCCCGGTCCCCCTCTACGTGCTACCGGTC
CCACTGCCACAACCCTCAATTCGGCTGGGGCTTAAACATGAAATCAACTCCCTATGCCTAAGCCA
ACCCACGAAACGAGCATACAGGAACTCAACCAACCGAAGAGGCAGAATACGCAAGCCAGGGATCG
GCCCAATCCCCCCTGCATGCTATCGATCCCGCTGCACAACCCTCGATCCGGCTCGA
Found at i:32126421 original size:157 final size:159
Alignment explanation
Indices: 32126095--32126421 Score: 367
Period size: 157 Copynumber: 2.1 Consensus size: 159
32126085 GGGGATTGGT
* * * *
32126095 CCGGTCCCCCTCTTCGTGCTGTCGGTCCCGCTGCCACAACCCTCGGTTCGGCTGGGGCTTAAACA
1 CCGGTCCCCCTCGTCGTGCTGTCGATCCCGCTGCCACAACCCTCGATCCGGCTGGGGCTTAAACA
* ** * *
32126160 TGAAATGATCTCCCTATGCCTAAGCCAACCCAGGAAACGAGCGTACAGGTGCTCAATCAGTCGAA
66 TGAAATGAACTCCCTATGCCTAAGCCAACCCAGGAAACGAGCGTACAGGCACTCAATCAGACCAA
* * * * *
32126225 GAGGCAGAATACGCAAGTCGGGGATCGGC
131 GAGGCAAAATACACAAGCCAGGGATCAGC
* * *
32126254 CCGATCCCCC-CTGT-GTGTTGTCGATCCCGCTG-CACAACCCTCGATCCGGCTGGGGCTTAGAC
1 CCGGTCCCCCTC-GTCGTGCTGTCGATCCCGCTGCCACAACCCTCGATCCGGCTGGGGCTTAAAC
* * ** *
32126316 ATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAC-AGGCGTGTAGAGCACTCAGTC-GAC
65 ATGAAATGAACTCCCTATGCCTAAGCCAACCCAGGAAACGA-GCGTACAG-GCACTCAATCAGAC
**
32126379 CAGAGAGGCAAAATGTACAAGCCAGGGATCAGC
128 CA-AGAGGCAAAATACACAAGCCAGGGATCAGC
32126412 CCGGTCCCCC
1 CCGGTCCCCC
32126422 CTGCGTGCTA
Statistics
Matches: 139, Mismatches: 25, Indels: 9
0.80 0.14 0.05
Matches are distributed among these distances:
156 1 0.01
157 72 0.52
158 56 0.40
159 10 0.07
ACGTcount: A:0.24, C:0.32, G:0.26, T:0.18
Consensus pattern (159 bp):
CCGGTCCCCCTCGTCGTGCTGTCGATCCCGCTGCCACAACCCTCGATCCGGCTGGGGCTTAAACA
TGAAATGAACTCCCTATGCCTAAGCCAACCCAGGAAACGAGCGTACAGGCACTCAATCAGACCAA
GAGGCAAAATACACAAGCCAGGGATCAGC
Found at i:32126876 original size:26 final size:26
Alignment explanation
Indices: 32126847--32126899 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
32126837 CCAGTCTGAT
32126847 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCTGTATG
32126873 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCTGTATG
32126899 C
1 C
32126900 CTAGGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCTGTATG
Found at i:32127177 original size:158 final size:156
Alignment explanation
Indices: 32126873--32127374 Score: 498
Period size: 158 Copynumber: 3.2 Consensus size: 156
32126863 ACTCTGTATG
* * *
32126873 CTTAGAC-ATGGAATGAACTCTGTATGCCTAGGCCAACCCATAAAACGAGCGTGTGGGCGCTCAG
1 CTTAGACTA-GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAA-GAGCGTGTGGGCGCT-AG
* * *
32126937 CTGGCCGGAGAGGCAGAATGTGCAAGCCGGGGATCGGCCCGATCCCCC-CTGCGTGCTATCGATC
63 CCGGCCGGAGAGGCAGAATGCGCAA-CCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTATCGATC
* * *
32127001 CTACTGGCGCAACACTCGGTTCGATCCGAT
127 CTACTGCCGCAACCCTCGGTCCGATCCGAT
* * *
32127031 CTTAGACTAAGAATGAACTGCGTATGCCTAAGTCAACCCACAAAATGAGCGTGTGGGCGCTGAGC
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAA-GAGCGTGTGGGCGCT-AGC
* * * * * ** * * *
32127096 CGG-CGGAAAAGGCATAATGCACAATCGAGGATCGGCTTGGTCCCCCTCTGCTTGTTGTCGATCC
64 CGGCCGG-AGAGGCAGAATGCGCAACCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTATCGATCC
* * *
32127160 CACTGCCACAACCCTCGGTCCGA-CTG-T
128 TACTGCCGCAACCCTCGGTCCGATCCGAT
* *
32127187 GGCTTAGAC-ATGGAATGAAACTCCCTATGCCTAAGCCAACCCACGAAACAG-GCGTGCGGGCGC
1 --CTTAGACTA-GGAATG-AACTCCGTATGCCTAAGCCAACCCAC-AAA-AGAGCGTGTGGGCGC
* * * *
32127250 ATAGCCGGTCGGAGAGGCAGGATGCGCAAGCTGGGGATTGGCCCGGTCCCCCT-TGCGTGCTATC
60 -TAGCCGGCCGGAGAGGCAGAATGCGCAA-CCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTATC
* * *
32127314 GATCCTGCTACCGCAGCCCTCGGTCCGATCCGAT
123 GATCCTACTGCCGCAACCCTCGGTCCGATCCGAT
*
32127348 CTTAGACTGGGAATGAACTCCGTATGC
1 CTTAGACTAGGAATGAACTCCGTATGC
32127375 TTAGACTGGG
Statistics
Matches: 276, Mismatches: 53, Indels: 30
0.77 0.15 0.08
Matches are distributed among these distances:
156 1 0.00
157 23 0.08
158 125 0.45
159 98 0.36
160 27 0.10
161 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.20
Consensus pattern (156 bp):
CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAAGAGCGTGTGGGCGCTAGCCG
GCCGGAGAGGCAGAATGCGCAACCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTATCGATCCTAC
TGCCGCAACCCTCGGTCCGATCCGAT
Found at i:32127377 original size:26 final size:26
Alignment explanation
Indices: 32127348--32127400 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
32127338 CCGATCCGAT
32127348 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
32127374 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
32127400 C
1 C
32127401 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:32134863 original size:26 final size:26
Alignment explanation
Indices: 32134834--32134886 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
32134824 CTGGTCCAAT
32134834 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
* *
32134860 CTTAGACTGGGGATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
32134886 C
1 C
32134887 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:32136085 original size:26 final size:26
Alignment explanation
Indices: 32136049--32136101 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
32136039 CCGGTCTGAC
*
32136049 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
32136075 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
32136101 C
1 C
32136102 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:32138483 original size:26 final size:26
Alignment explanation
Indices: 32138442--32138494 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32138432 CCGGTCCGAT
*
32138442 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
32138468 CTTAGACTA-GAGATGAACTCCGTATG
1 CTTAGACTAGGA-ATGAACTCCGTATG
32138494 C
1 C
32138495 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 2 0.08
26 23 0.92
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:32140065 original size:26 final size:26
Alignment explanation
Indices: 32140036--32140114 Score: 142
Period size: 26 Copynumber: 3.0 Consensus size: 26
32140026 TCGATCCGAT
32140036 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
32140062 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
32140088 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
32140114 C
1 C
32140115 CTAAGCCAAC
Statistics
Matches: 52, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
26 51 0.98
27 1 0.02
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:32146196 original size:26 final size:26
Alignment explanation
Indices: 32146167--32146219 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
32146157 CCGATCCGAT
32146167 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* * *
32146193 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
32146219 C
1 C
32146220 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:32147928 original size:26 final size:26
Alignment explanation
Indices: 32147892--32147943 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
32147882 GCTCAAAATA
* *
32147892 TTAGACTGGGAATGAACTCTGTATGC
1 TTAGACAGGGAATGAACTCCGTATGC
32147918 TTAGACAGGGAATGAACTCCGTATGC
1 TTAGACAGGGAATGAACTCCGTATGC
32147944 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.17, G:0.27, T:0.27
Consensus pattern (26 bp):
TTAGACAGGGAATGAACTCCGTATGC
Found at i:32148433 original size:26 final size:26
Alignment explanation
Indices: 32148392--32148444 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32148382 CCAATCCGAT
32148392 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTTCATATG
*
32148418 CTTAGACTAGGG-ATGAACTTCGTATG
1 CTTAGACT-GGGAATGAACTTCATATG
32148444 C
1 C
32148445 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCATATG
Found at i:32149334 original size:26 final size:26
Alignment explanation
Indices: 32149296--32149346 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
32149286 GGCTCAAAAT
**
32149296 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
32149322 CTTAGACAAGGAATGAACTCCGTAT
1 CTTAGACAAGGAATGAACTCCGTAT
32149347 ACCTAAGCCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (26 bp):
CTTAGACAAGGAATGAACTCCGTATG
Found at i:32149748 original size:158 final size:157
Alignment explanation
Indices: 32149321--32149774 Score: 425
Period size: 158 Copynumber: 2.9 Consensus size: 157
32149311 AACTCCGTAT
* * * *
32149321 GCTTAGACAAGGAATGAACTCCGTATACCTAAGCCAACCCATGAAACAAGCATGTGGGGGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAGGCGTGTGGGGGCTCAG
* * * *
32149386 CTGGCCGAAGAGGTAGAATCGCAAGTCGAGGATCGGCCCGGTCTCCCCCTACGTGCTATCGATCC
66 CCGGCCGAAGAGGCAGAATCGCAAGTCGAGGATCGGCCCGGTC-CCCCCTACATGCTACCGATCC
* * *
32149451 TGGTGCTGCAACCCTCGGTCTGGTCTGA
130 TGCTGCTGCAACCCTCGGTCTCGACTGA
* * * * * * ** *
32149479 TCTTAGAC-TGGGAATGAACTCTGTATGCATAAGTCAACCCACGAAAC-GAGCGTGCGGGCACTG
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAG-GCGTGTGGGGGCTC
* * ** * * * *
32149542 AACCAGCCGAAGAGGCTTAATACGCAAGCCGAGGATCAGCCCGGTCCCCCTCTGCATGCTACCGG
64 AGCCGGCCGAAGAGGCAGAAT-CGCAAGTCGAGGATCGGCCCGGTCCCCC-CTACATGCTACCGA
* *
32149607 TCTTGCTGC-GACAACCCTCGGTC-CGACTGGG
127 TCCTGCTGCTG-CAACCCTCGGTCTCGACT-GA
* *
32149638 GCTTAGACATGGAATGAACTCCG-ATGCCTAAGCCAACCCATGAAACAGGTGTGTGGGGGTTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAGGCGTGTGGGGGCTCAG
* * * * ***
32149702 CCGGCTGAAGAGGCAGAATGCGTAAGTC-AGGGATCGGCCCGATCCCCCATGTGTGCTACCGATC
66 CCGGCCGAAGAGGCAGAAT-CGCAAGTCGA-GGATCGGCCCGGTCCCCCCTACATGCTACCGATC
*
32149766 CTTCTGCTG
129 CTGCTGCTG
32149775 GTCCTACTAT
Statistics
Matches: 229, Mismatches: 57, Indels: 20
0.75 0.19 0.07
Matches are distributed among these distances:
157 18 0.08
158 138 0.60
159 72 0.31
160 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAGGCGTGTGGGGGCTCAG
CCGGCCGAAGAGGCAGAATCGCAAGTCGAGGATCGGCCCGGTCCCCCCTACATGCTACCGATCCT
GCTGCTGCAACCCTCGGTCTCGACTGA
Found at i:32150326 original size:158 final size:156
Alignment explanation
Indices: 32149834--32150335 Score: 487
Period size: 158 Copynumber: 3.2 Consensus size: 156
32149824 ACTTCGTATG
*
32149834 CTTAGACATG-GAATGAACTCCGC-ATGCCTAAGCCAACCCATGAAATGAGCATGTGGGCGATCA
1 CTTAGACA-GAGAATGAACTCC-CTATGCCTAAGCCAACCCATGAAATGAGCATGCGGGC-ATCA
* * * * *
32149897 GCCGGCTGGAAAGGCCGAATGGGCAAGCCAGGGATTGACCCGGTCCCCCCTACGTGCTGTCGATC
63 GCCGGCTGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCC-GTCCCCCCTGCGTGCTGTCGATC
* *
32149962 CTACTGCCACAACCCTTGGTCTAGTCTGAT
127 CTACTGCCACAACCCTAGGTCTGGTCTGAT
* * *** * * * * *
32149992 CTTAGACAGGGAATGAATTTTGTATACCTAAGTCAACCCACT-AAATTAGCGTGCGGGCATTGAG
1 CTTAGACAGAGAATGAACTCCCTATGCCTAAGCCAACCCA-TGAAATGAGCATGCGGGCA-TCAG
* * *
32150056 CCGG-TCGGAGAGGCATAATACGCAAGCCGGGGATCGACCCGATCCCCCTCTGCGTGCTGTCGAT
64 CCGGCT-GGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCG-TCCCCC-CTGCGTGCTGTCGAT
* **
32150120 CCCACTGCCACAACCCTAGGTCTGG-CTGGGG
126 CCTACTGCCACAACCCTAGGTCTGGTCT-GAT
* * * * *
32150151 CTTAGATA-AGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATGCAGGCACACAG
1 CTTAGACAGA-GAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGAGCATGCGGGCA-TCAG
* * *
32150215 CTGGCTGGAGCA-GCAGAATGCGCAAGCCAGGGATCAACCCTGTCCCCCCTGCATGCTGTCGATC
64 CCGGCTGGAG-AGGCAGAATGCGCAAGCCAGGGATCGACCC-GTCCCCCCTGCGTGCTGTCGATC
* * * *
32150279 CTGCTACCGCAACCCTCGGTCTGGTCTGAT
127 CTACTGCCACAACCCTAGGTCTGGTCTGAT
* *
32150309 CTTAGACCGAGAATGAACTCCGTATGC
1 CTTAGACAGAGAATGAACTCCCTATGC
32150336 TTAGACTGGG
Statistics
Matches: 274, Mismatches: 55, Indels: 30
0.76 0.15 0.08
Matches are distributed among these distances:
157 4 0.01
158 144 0.53
159 123 0.45
160 3 0.01
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (156 bp):
CTTAGACAGAGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGAGCATGCGGGCATCAGCC
GGCTGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGTCCCCCCTGCGTGCTGTCGATCCTAC
TGCCACAACCCTAGGTCTGGTCTGAT
Found at i:32151445 original size:26 final size:25
Alignment explanation
Indices: 32151405--32151453 Score: 71
Period size: 26 Copynumber: 1.9 Consensus size: 25
32151395 CTGATCCGAT
* *
32151405 CTTAGACTGGAATGAACTTCGTATG
1 CTTAGACCGGAATGAACTCCGTATG
32151430 CTTAGACACGGAATGAACTCCGTA
1 CTTAGAC-CGGAATGAACTCCGTA
32151454 CGCCTAAGCC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 7 0.33
26 14 0.67
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (25 bp):
CTTAGACCGGAATGAACTCCGTATG
Found at i:32151614 original size:184 final size:184
Alignment explanation
Indices: 32151245--32151614 Score: 422
Period size: 184 Copynumber: 2.0 Consensus size: 184
32151235 TCTGACTGGA
* * * *
32151245 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCACTCAG
1 GCTTAGACACGGAATGAACTCCGTACGCCTAAGCCAACCCACAAAACGAGCGTGCGAGCACTCAG
* * * * *
32151310 CCGATCGATGAGGCAGAATGCGCAAGTCGAAGATCGACCCGGTCCCCCCTACGTGCTGTTGATCC
66 CCGATCGATGAGGCAGAATGCGCAAGTCGAAGACCAACCCGGTCCCCCCTACATGCTATCGATCC
** * * * * * * *
32151375 TGCTGTAGCAACCCCTCGGTCTGATCCGATCTTAGACTGGAATGAACTTCGTAT
131 TGCTACAGCAACCCATCAGCCCGATCCGATCTTAGAATGGAACGAACTCCGTAT
* *
32151429 GCTTAGACACGGAATGAACTCCGTACGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACACGGAATGAACTCCGTACGCCTAAGCCAACCCACAAAACGAGCGTGCGAGCACTCAG
* * * ** * * *
32151494 TCGGTCGGA-GAGGCAGAATGCGTAA-TCCGGTGACCAACGCGGTCCCCCTTGCATGCTATCGAT
66 CCGATC-GATGAGGCAGAATGCGCAAGT-CGAAGACCAACCCGGTCCCCCCTACATGCTATCGAT
* *
32151557 CCTGCTACCGCAA-CCATCAGCCCGGTCCGATCTTAGAATGGGAACGAACTCCGTAT
129 CCTGCTACAGCAACCCATCAGCCCGATCCGATCTTAGAAT-GGAACGAACTCCGTAT
32151613 GC
1 GC
32151615 CTAAGTTAAC
Statistics
Matches: 153, Mismatches: 30, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
183 21 0.14
184 130 0.85
185 2 0.01
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (184 bp):
GCTTAGACACGGAATGAACTCCGTACGCCTAAGCCAACCCACAAAACGAGCGTGCGAGCACTCAG
CCGATCGATGAGGCAGAATGCGCAAGTCGAAGACCAACCCGGTCCCCCCTACATGCTATCGATCC
TGCTACAGCAACCCATCAGCCCGATCCGATCTTAGAATGGAACGAACTCCGTAT
Found at i:32151941 original size:26 final size:26
Alignment explanation
Indices: 32151905--32151957 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
32151895 CCGGTCTGAT
*
32151905 CTTAGACTGGGAAAGAACTTCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
* *
32151931 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
32151957 C
1 C
32151958 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCGTATG
Found at i:32152314 original size:26 final size:26
Alignment explanation
Indices: 32152285--32152337 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
32152275 CCGGTCCAAT
32152285 CTTAGAC-TGGGAATGAAC-TCCGTATG
1 CTTAGACAT-GGAATGAACTTCC-TATG
32152311 CTTAGACATGGAATGAACTTCCTATG
1 CTTAGACATGGAATGAACTTCCTATG
32152337 C
1 C
32152338 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTTCCTATG
Found at i:32152885 original size:860 final size:855
Alignment explanation
Indices: 32150820--32152919 Score: 2123
Period size: 860 Copynumber: 2.4 Consensus size: 855
32150810 GGGGATCGAC
* * * * *** *
32150820 CCGTTCCCCCTCTGCGTGCTGTCGGTCTCGCTGCCACAA-CTTTCGGTCCAACTGGGGCTTAGAC
1 CCGTTCCCCCTCTGCGTGCTGCCGGTCCCACTGCCACAACCCTT-GGTCTGGCTGGGGCTTAAAC
* * *
32150884 ATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATGCGGGCGCTTAGCCGACCGA
65 ATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAGCCGACCGG
** * * * ** ** *
32150949 AGAGTCAGAATGTGCAAGTC-AGGGATCGGCTCGGTCCCTCCAACGTGCTATTGATCCTGCTATC
130 AGACACAGAATGAGCAAGTCGA-GGATCAGCTCGGTCCCCCCTGCGTGCTACAGATCCT-TTATC
* * * * *
32151013 AAAACCCTT-GGTCCTGTCCGATCTTAGACTAGGAATGAACTTCTGTATG-TTGAGA-TTGCAGA
193 GAAA-CCTTCGGTCCGGTCCGATCTTAGACTGGGAATGAAC-TCCGTATGCTT-AGACTTG-GGA
* * * *
32151075 TGAACTCCGTATGCCTAAGTCAACCCATAAAATGAGCCTGCAGGTGCTCAGCCAACC-GAAGAGG
254 TGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGCGCTCAGCCAACCAG-AGAGG
* * * *
32151139 CCGGTCGGAGAGGCATAATGTGCAAGCCGAGGATCAGCCCGATTCCCT-TCTGCGTGCTATCGAT
318 CCGGTCGAAGAGGCATAATGCGCAAGCCGAGGATCAGCCCGA-TCCCTCTCTGCCTGCTACCGAT
*
32151203 CTCGCTGCCGGTCCTGCTGCCACAACCCTCAATCTGACTGGAGCTTAGACATGGAATGAACTCTG
382 CTCGCTGCCGGTCCTGCTGCCACAACCCTCAATCCGACTGGAGCTTAGACATGGAATGAACTCTG
*
32151268 TATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCACTCAGCCGATCGATGAGGCAGAATGCGC
447 TATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCACTCAGCCGATCGATGAGGCAGAATACGC
* * * * *
32151333 AAGTCGAAGATCGACCCGGTCCCCCCTACGTGCTGTTGATCCTGCTGTAGCAACCCCTCGGTCTG
512 AAGTCGAAGATCGACCCGGTCCCCCCTACGTCCTGCTGATCCTGCTGCAGCAACCCCTCGATCCG
* *
32151398 ATCCGATCTTAGACTGGAATGAACTTCGTATGCTTAGACACGGAATGAACTCCGTACGCCTAAGC
577 ATCCAATCTTAGACTGGAATGAACTCCGTATGCTTAGACACGGAATGAACTCCGTACGCCTAAGC
* ** * *
32151463 CAACCCACAAAACGAGCGTGCGGGCGCTCAGTCGGTCGGAGAGGCAGAATGCGTAATCCGGTGAC
642 CAACCCACAAAACGAACGTGCGGGCGCTCAGTCAATCGAAGAGACAGAATGCGTAATCCGGTGAC
* * *
32151528 CAACGCGGTCCCCCTTGCATGCTATCGATCCTGCTACCGCAACCATCAGCCCGGTCCGATCTTAG
707 CAACGCGGTCCCCCCTGCATGCTATCAATCCTCCTACCGCAACCATCAGCCCGGTCCGATCTTAG
* * * * *
32151593 AATGGGAACGAACTCCGTATGCCTAAGTTAACCCATGAAATGAGCGTGCGGGCGCTGAGCTAGCC
772 AATGGGAACGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGAGCACTCAGCTAGCC
32151658 AAAGAGGCATAATGCGCAAGTCGAAGATCGG
837 ----A--CA-AATGCGCAAG-C-AAGA---G
* * * * * *
32151689 TCCGGTCCCCCTCTACGTGCTGCCGGTCCAACTGCCACAACCCTCGATTTGGCTGGGGCTTAAAC
1 -CCGTTCCCCCTCTGCGTGCTGCCGGTCCCACTGCCACAACCCTTGGTCTGGCTGGGGCTTAAAC
* * * *
32151754 ATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGTGCTCAACC-AGCTG
65 ATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAGCCGA-CCG
** * * * *
32151818 GAGATGCAAAAT-ACGCAAGTCG-GTGATCAGCTTGGTCCCCACTGCGTGCTACAGATCCTTCTG
129 GAGACACAGAATGA-GCAAGTCGAG-GATCAGCTCGGTCCCCCCTGCGTGCTACAGATCCTT-TA
* * * * * *
32151881 TCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAAAGAACTTCGTATGCTTAGACTGGGGATG
191 TCGAAACCTTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTTGGGATG
** * * * *
32151946 AACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGCACGGGCACTCAGCCAACCAAAGAGGCTG
256 AACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGCGCTCAGCCAACCAGAGAGGCCG
* * *
32152011 GTCGAAAAGGCATAATGCGCAAGCC-AGGGTTCAGCCCGATCCCTCTCTGCCTGTTACCGATC-C
321 GTCGAAGAGGCATAATGCGCAAGCCGA-GGATCAGCCCGATCCCTCTCTGCCTGCTACCGATCTC
* ** * *
32152074 TGTTGCCGGTCCTGCTGCCACAACCCTCGGTCCG-GTAGGTGCTTAGACATGGAATGAACT-TCG
385 -GCTGCCGGTCCTGCTGCCACAACCCTCAATCCGACT-GGAGCTTAGACATGGAATGAACTCT-G
* * * * * * ** * * *
32152137 TATGCCTAAGCCAACCTATGAAAGGAGTGTGTGGGTGCTCAGCCGA-CTGGTGAGGTAGAATATG
447 TATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCACTCAGCCGATC-GATGAGGCAGAATACG
* * * *
32152201 CAAG-CTGAGGATCGACCTGGTCCACTCTGCATGCTGTCGATCCTGCTGCTAGTCCTGCTGCCGC
511 CAAGTC-GAAGATCGACCCGGTCC-C-C--C---CT-ACG-TCCTGCTG--A-TCCTGCTGCAGC
* *
32152265 AA-CCCTCGATCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAAC
563 AACCCCTCGATCCGATCCAATCTTAGACT-GGAATGAACTCCGTATGCTTAGACACGGAATGAAC
* * * *
32152329 TTCC-TATGCCTAAGCCAACCCATAAAATGAACGTGCGGGTGCTCAGTCAATCGAAGAGACAGAA
627 -TCCGTACGCCTAAGCCAACCCACAAAACGAACGTGCGGGCGCTCAGTCAATCGAAGAGACAGAA
* * * *** * *
32152393 TGCGTAAAT-CGAG-GATCGACGCGGTCCCCCCTGCATGCTGTCAATCCTCCTGTTGCAGCCCTC
691 TGCGT-AATCCG-GTGACCAACGCGGTCCCCCCTGCATGCTATCAATCCTCCTACCGCAACCATC
* * * * * *
32152456 GGTCCGGTCTGATCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGT
754 AGCCCGGTCCGATCTTAGAATGGGAACGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGT
* * **
32152521 GCGAGCACTCAGTTGGCC-C-CCTGC-C-A-C-A-A-
819 GCGAGCACTCAGCTAGCCACAAATGCGCAAGCAAGAG
* *
32152550 CCGTTCCCCCTCTGCGTGCTCCCGGTCCCACTGCCACAACCCTTGGTCTGGCTAGGGCTTAAACA
1 CCGTTCCCCCTCTGCGTGCTGCCGGTCCCACTGCCACAACCCTTGGTCTGGCTGGGGCTTAAACA
** **
32152615 TGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCGGGCAATCAGCCGACCGGA
66 TGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAGCCGACCGGA
* ** * * * * * * *
32152680 GACACAGAATGAGTAACCCGAGGATCAGCCCGATCCCCCCTGTGTGCTGCCGATCCTATTATTGT
131 GACACAGAATGAGCAAGTCGAGGATCAGCTCGGTCCCCCCTGCGTGCTACAGATCCT-TTATCGA
* *
32152745 AACCTTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTTGGGATGAACT
195 AACCTTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTTGGGATGAACT
** * * * * **
32152810 GTGTATGCCTAAGTCAACCCACGAAACAAGCGTGCAGGCGCTCAGTCAGCCAGAGAGGCCGACCG
260 CCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGCGCTCAGCCAACCAGAGAGGCCGGTCG
* * *
32152875 AAGTGGCATAATGCCCAAGCCGAGGATCAGCCCGATCTCTCTCTG
325 AAGAGGCATAATGCGCAAGCCGAGGATCAGCCCGATCCCTCTCTG
32152920 TGTCTTGTCG
Statistics
Matches: 1005, Mismatches: 187, Indels: 86
0.79 0.15 0.07
Matches are distributed among these distances:
860 302 0.30
861 5 0.00
865 1 0.00
866 1 0.00
868 12 0.01
869 240 0.24
870 183 0.18
871 4 0.00
872 3 0.00
873 1 0.00
874 1 0.00
876 2 0.00
877 2 0.00
878 6 0.01
880 23 0.02
881 212 0.21
882 7 0.01
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.21
Consensus pattern (855 bp):
CCGTTCCCCCTCTGCGTGCTGCCGGTCCCACTGCCACAACCCTTGGTCTGGCTGGGGCTTAAACA
TGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAGCCGACCGGA
GACACAGAATGAGCAAGTCGAGGATCAGCTCGGTCCCCCCTGCGTGCTACAGATCCTTTATCGAA
ACCTTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTTGGGATGAACTC
CGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGCGCTCAGCCAACCAGAGAGGCCGGTCGA
AGAGGCATAATGCGCAAGCCGAGGATCAGCCCGATCCCTCTCTGCCTGCTACCGATCTCGCTGCC
GGTCCTGCTGCCACAACCCTCAATCCGACTGGAGCTTAGACATGGAATGAACTCTGTATGCCTAA
GCCAACCCACGAAACGAGCGTGCGAGCACTCAGCCGATCGATGAGGCAGAATACGCAAGTCGAAG
ATCGACCCGGTCCCCCCTACGTCCTGCTGATCCTGCTGCAGCAACCCCTCGATCCGATCCAATCT
TAGACTGGAATGAACTCCGTATGCTTAGACACGGAATGAACTCCGTACGCCTAAGCCAACCCACA
AAACGAACGTGCGGGCGCTCAGTCAATCGAAGAGACAGAATGCGTAATCCGGTGACCAACGCGGT
CCCCCCTGCATGCTATCAATCCTCCTACCGCAACCATCAGCCCGGTCCGATCTTAGAATGGGAAC
GAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGAGCACTCAGCTAGCCACAAATGCG
CAAGCAAGAG
Found at i:32156312 original size:27 final size:27
Alignment explanation
Indices: 32156282--32156369 Score: 77
Period size: 27 Copynumber: 3.1 Consensus size: 27
32156272 TTGTGTAGGG
*
32156282 AAAATTGATACTTTCAACTTTTCCTCA
1 AAAATTGATACTTTCAACTTTTTCTCA
* ** * ***
32156309 AAAATTTATTTTTTCAAAAATTTATTAAGA
1 AAAATTGATACTTTC--AACTTT-TTCTCA
32156339 AAAATTGATACTTTCAACTTTTTCTCA
1 AAAATTGATACTTTCAACTTTTTCTCA
32156366 AAAA
1 AAAA
32156370 CCCTTTTTTT
Statistics
Matches: 43, Mismatches: 15, Indels: 6
0.67 0.23 0.09
Matches are distributed among these distances:
27 19 0.44
28 5 0.12
29 5 0.12
30 14 0.33
ACGTcount: A:0.41, C:0.14, G:0.03, T:0.42
Consensus pattern (27 bp):
AAAATTGATACTTTCAACTTTTTCTCA
Found at i:32156343 original size:57 final size:56
Alignment explanation
Indices: 32156282--32156437 Score: 199
Period size: 57 Copynumber: 2.7 Consensus size: 56
32156272 TTGTGTAGGG
32156282 AAAATTGATACTTTCAACTTTTCCTCAAAAATTTATTTTTTCAAAAATTTA-TTAAGA
1 AAAATTGATACTTTCAACTTTTCCTCAAAAA-TTATTTTTT-AAAAATTTATTTAAGA
* * * *
32156339 AAAATTGATACTTTCAACTTTTTCTCAAAAACCCT-TTTTTTGAAAATTTATTTTTAAGG
1 AAAATTGATACTTTCAACTTTTCCTCAAAAA--TTATTTTTTAAAAATTTA--TTTAAGA
*
32156398 AAAATTGATACTTTCAACTTTTCCTCAAAAATAATTTTTT
1 AAAATTGATACTTTCAACTTTTCCTCAAAAATTATTTTTT
32156438 TGAAATTTTA
Statistics
Matches: 86, Mismatches: 8, Indels: 9
0.83 0.08 0.09
Matches are distributed among these distances:
56 8 0.09
57 36 0.42
58 7 0.08
59 35 0.41
ACGTcount: A:0.37, C:0.13, G:0.04, T:0.45
Consensus pattern (56 bp):
AAAATTGATACTTTCAACTTTTCCTCAAAAATTATTTTTTAAAAATTTATTTAAGA
Found at i:32156417 original size:59 final size:59
Alignment explanation
Indices: 32156280--32156448 Score: 211
Period size: 59 Copynumber: 2.9 Consensus size: 59
32156270 TCTTGTGTAG
** *
32156280 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATTTATTTTTTCAAAA---ATTTATTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAAAAT-TTTTTTGAAAATTTATTTATTAA
* * **
32156337 GAAAAATTGATACTTTCAACTTTTTCTCAAAAACCCTTTTTTTGAAAATTTATTT-TTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAA-AATTTTTTTGAAAATTTATTTATTAA
*
32156396 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATAATTTTTTTGAAATTTTAT
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAA-AATTTTTTTGAAAATTTAT
32156449 CATTTTATTT
Statistics
Matches: 97, Mismatches: 11, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
57 41 0.42
58 1 0.01
59 51 0.53
60 4 0.04
ACGTcount: A:0.37, C:0.12, G:0.06, T:0.45
Consensus pattern (59 bp):
GGAAAATTGATACTTTCAACTTTTCCTCAAAAAAATTTTTTTGAAAATTTATTTATTAA
Found at i:32158119 original size:18 final size:17
Alignment explanation
Indices: 32158096--32158134 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 17
32158086 TTTTCCCTTC
*
32158096 CTATTCGGATTCCTCCT
1 CTATTCAGATTCCTCCT
32158113 ACTATTCAGATTCCTCCT
1 -CTATTCAGATTCCTCCT
32158131 CTAT
1 CTAT
32158135 CATTTTTTTG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 4 0.20
18 16 0.80
ACGTcount: A:0.18, C:0.33, G:0.08, T:0.41
Consensus pattern (17 bp):
CTATTCAGATTCCTCCT
Found at i:32158883 original size:26 final size:25
Alignment explanation
Indices: 32158854--32158919 Score: 73
Period size: 26 Copynumber: 2.6 Consensus size: 25
32158844 AAACAAAAAA
32158854 AAATAATAATAAATATATAA-CTA-CAT
1 AAATAA-AATAAATATA-AATCTATC-T
*
32158880 AAATAAAATACATATAAATCTATTCT
1 AAATAAAATAAATATAAATCTA-TCT
32158906 AAATAAAATAAATA
1 AAATAAAATAAATA
32158920 AATCAATACA
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
24 2 0.06
25 12 0.34
26 20 0.57
27 1 0.03
ACGTcount: A:0.62, C:0.08, G:0.00, T:0.30
Consensus pattern (25 bp):
AAATAAAATAAATATAAATCTATCT
Found at i:32158977 original size:9 final size:9
Alignment explanation
Indices: 32158944--32158983 Score: 50
Period size: 9 Copynumber: 4.7 Consensus size: 9
32158934 TACATATATT
32158944 AATACATAA
1 AATACATAA
32158953 TAATA-AT-A
1 -AATACATAA
32158961 AATA-ATAA
1 AATACATAA
32158969 AATACATAA
1 AATACATAA
32158978 AATACA
1 AATACA
32158984 AAAGAAGAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
7 6 0.21
8 6 0.21
9 12 0.43
10 4 0.14
ACGTcount: A:0.68, C:0.07, G:0.00, T:0.25
Consensus pattern (9 bp):
AATACATAA
Found at i:32159175 original size:1 final size:1
Alignment explanation
Indices: 32159169--32159245 Score: 73
Period size: 1 Copynumber: 77.0 Consensus size: 1
32159159 AACATTGTCA
* * * * * * * * *
32159169 TTTTTTTGTTTTTTTTTTTGTTTTTTGTGTTTTTTTTTGTGTTTTTTTTTGTTTTTTGTTTTTTG
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
32159234 TTTTTTTTTTTT
1 TTTTTTTTTTTT
32159246 ACCAAAGCTC
Statistics
Matches: 58, Mismatches: 18, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
1 58 1.00
ACGTcount: A:0.00, C:0.00, G:0.12, T:0.88
Consensus pattern (1 bp):
T
Found at i:32159182 original size:7 final size:7
Alignment explanation
Indices: 32159170--32159245 Score: 86
Period size: 7 Copynumber: 10.9 Consensus size: 7
32159160 ACATTGTCAT
32159170 TTTTTTG
1 TTTTTTG
32159177 -TTTTT-
1 TTTTTTG
32159182 TTTTTTG
1 TTTTTTG
32159189 TTTTTTG
1 TTTTTTG
*
32159196 TGTTTTTT
1 T-TTTTTG
*
32159204 TTTGTGTTT
1 TTT-T-TTG
32159213 TTTTTTG
1 TTTTTTG
32159220 TTTTTTG
1 TTTTTTG
32159227 TTTTTTG
1 TTTTTTG
32159234 TTTTTT-
1 TTTTTTG
32159240 TTTTTT
1 TTTTTT
32159246 ACCAAAGCTC
Statistics
Matches: 62, Mismatches: 2, Indels: 11
0.83 0.03 0.15
Matches are distributed among these distances:
6 16 0.26
7 32 0.52
8 8 0.13
9 6 0.10
ACGTcount: A:0.00, C:0.00, G:0.12, T:0.88
Consensus pattern (7 bp):
TTTTTTG
Found at i:32159186 original size:12 final size:12
Alignment explanation
Indices: 32159169--32159244 Score: 88
Period size: 12 Copynumber: 6.6 Consensus size: 12
32159159 AACATTGTCA
32159169 TTTTTTTGTTTT
1 TTTTTTTGTTTT
32159181 TTTTTTTG---T
1 TTTTTTTGTTTT
*
32159190 TTTTTGTGTTTT
1 TTTTTTTGTTTT
*
32159202 TTTTTGTGTTTT
1 TTTTTTTGTTTT
32159214 TTTTTGTT-TTTT
1 TTTTT-TTGTTTT
*
32159226 GTTTTTTGTTTT
1 TTTTTTTGTTTT
32159238 TTTTTTT
1 TTTTTTT
32159245 TACCAAAGCT
Statistics
Matches: 55, Mismatches: 4, Indels: 10
0.80 0.06 0.14
Matches are distributed among these distances:
9 8 0.15
11 2 0.04
12 44 0.80
13 1 0.02
ACGTcount: A:0.00, C:0.00, G:0.12, T:0.88
Consensus pattern (12 bp):
TTTTTTTGTTTT
Found at i:32159194 original size:19 final size:19
Alignment explanation
Indices: 32159170--32159244 Score: 116
Period size: 19 Copynumber: 3.9 Consensus size: 19
32159160 ACATTGTCAT
32159170 TTTTTTGTTTTTTTTTTTG
1 TTTTTTGTTTTTTTTTTTG
*
32159189 TTTTTTGTGTTTTTTTTTG
1 TTTTTTGTTTTTTTTTTTG
*
32159208 TGTTTTT-TTTTGTTTTTTG
1 T-TTTTTGTTTTTTTTTTTG
32159227 TTTTTTGTTTTTTTTTTT
1 TTTTTTGTTTTTTTTTTT
32159245 TACCAAAGCT
Statistics
Matches: 50, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
18 5 0.10
19 40 0.80
20 5 0.10
ACGTcount: A:0.00, C:0.00, G:0.12, T:0.88
Consensus pattern (19 bp):
TTTTTTGTTTTTTTTTTTG
Found at i:32159206 original size:31 final size:30
Alignment explanation
Indices: 32159169--32159245 Score: 120
Period size: 31 Copynumber: 2.6 Consensus size: 30
32159159 AACATTGTCA
32159169 TTTTTTTGTTTTTTTTTTTGTTTTTTGTGTT
1 TTTTTTTGTTTTTTTTTTTGTTTTTTGT-TT
*
32159200 TTTTTTTGTGTTTTTTTTTGTTTTTTGTTT
1 TTTTTTTGTTTTTTTTTTTGTTTTTTGTTT
*
32159230 TTTGTTT-TTTTTTTTT
1 TTTTTTTGTTTTTTTTT
32159246 ACCAAAGCTC
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
29 8 0.19
30 8 0.19
31 27 0.63
ACGTcount: A:0.00, C:0.00, G:0.12, T:0.88
Consensus pattern (30 bp):
TTTTTTTGTTTTTTTTTTTGTTTTTTGTTT
Found at i:32159348 original size:42 final size:42
Alignment explanation
Indices: 32159252--32159636 Score: 630
Period size: 42 Copynumber: 9.1 Consensus size: 42
32159242 TTTTACCAAA
* *
32159252 GCTCCTCTAAACAGAGGCTCAACGACTTTGAGAAACA-TAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGA-AAA-AGTAAATT
*
32159295 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAAGTAAATT
*
32159337 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAAATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAAGTAAATT
32159379 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAAGTAAATT
32159421 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAAGTAAATT
* *
32159463 GCTCCTCTAAACAGAGGCACCATGACTTTTG-GAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGAC-TTTGAAAAAGTAAATT
* * *
32159505 GCTCCTGTAAACAGAGGCACCACGGCTTTGGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAAGTAAATT
*
32159547 ACTCCTCTAAACAGAGGCACCACGACTTTGAAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAAGTAAATT
*
32159589 GCTCCTCTAAACAGAGGCACCACGACTTTGCAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAAGTAAATT
32159631 GCTCCT
1 GCTCCT
32159637 TGACAATCAT
Statistics
Matches: 321, Mismatches: 18, Indels: 7
0.93 0.05 0.02
Matches are distributed among these distances:
41 5 0.02
42 284 0.88
43 32 0.10
ACGTcount: A:0.36, C:0.24, G:0.17, T:0.22
Consensus pattern (42 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAAGTAAATT
Found at i:32160902 original size:23 final size:23
Alignment explanation
Indices: 32160871--32160932 Score: 72
Period size: 23 Copynumber: 2.7 Consensus size: 23
32160861 AAATTAAATC
* *
32160871 TCTTTTTTCATTTTTTCATTTTT
1 TCTTCTTTCTTTTTTTCATTTTT
*
32160894 TCTTCTTTCTTTTTTTTCCTTTTT
1 TCTTCTTTC-TTTTTTTCATTTTT
*
32160918 T-TTCTCTCTTTTTTT
1 TCTTCTTTCTTTTTTT
32160933 TCATCATCTT
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
22 7 0.21
23 14 0.41
24 13 0.38
ACGTcount: A:0.03, C:0.18, G:0.00, T:0.79
Consensus pattern (23 bp):
TCTTCTTTCTTTTTTTCATTTTT
Found at i:32160933 original size:23 final size:24
Alignment explanation
Indices: 32160881--32160936 Score: 87
Period size: 23 Copynumber: 2.4 Consensus size: 24
32160871 TCTTTTTTCA
*
32160881 TTTTTTCATTTTTTCTTCTTTCTT
1 TTTTTTCATTTTTTCTTCTCTCTT
*
32160905 TTTTTTCCTTTTTT-TTCTCTCTT
1 TTTTTTCATTTTTTCTTCTCTCTT
32160928 TTTTTTCAT
1 TTTTTTCAT
32160937 CATCTTTTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
23 16 0.55
24 13 0.45
ACGTcount: A:0.04, C:0.18, G:0.00, T:0.79
Consensus pattern (24 bp):
TTTTTTCATTTTTTCTTCTCTCTT
Found at i:32160934 original size:13 final size:13
Alignment explanation
Indices: 32160889--32160948 Score: 63
Period size: 13 Copynumber: 4.6 Consensus size: 13
32160879 CATTTTTTCA
*
32160889 TTTTTTCTTCTTTC
1 TTTTTT-TTCTCTC
32160903 -TTTTTTT-TC-C
1 TTTTTTTTCTCTC
32160913 TTTTTTTTCTCTC
1 TTTTTTTTCTCTC
32160926 TTTTTTTTCATCATC
1 TTTTTTTTC-TC-TC
32160941 TTTTTTTT
1 TTTTTTTT
32160949 TTTTCATTTT
Statistics
Matches: 40, Mismatches: 1, Indels: 9
0.80 0.02 0.18
Matches are distributed among these distances:
10 1 0.03
11 8 0.20
12 4 0.10
13 15 0.38
14 2 0.05
15 10 0.25
ACGTcount: A:0.03, C:0.18, G:0.00, T:0.78
Consensus pattern (13 bp):
TTTTTTTTCTCTC
Found at i:32163233 original size:26 final size:26
Alignment explanation
Indices: 32163182--32163233 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
32163172 CGGTCCAATT
* *
32163182 TTAGACTGGGAATGAACTTCGGATGC
1 TTAGACTGGGAATAAACTCCGGATGC
*
32163208 TTAGACAT-GGAATAAACTCCGTATGC
1 TTAGAC-TGGGAATAAACTCCGGATGC
32163234 CTAAGCCAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATAAACTCCGGATGC
Found at i:32163560 original size:159 final size:157
Alignment explanation
Indices: 32163207--32163644 Score: 445
Period size: 159 Copynumber: 2.8 Consensus size: 157
32163197 ACTTCGGATG
* * * *
32163207 CTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACGAAACGAA-CGTGTGGTCACTCAG
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAC-AAGCGTGCGGGCACTCAG
* * **
32163271 CCGACCGGAGAGGTAGAATGCGCAAGCCGGGGATCGATCCGGTCCCCCTGCGTGCTGTCGATCTT
65 CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTGCGTGCTGTCGATCCC
* * * **
32163336 GCTGCTACAAGCCTCGGTTCGGTTCGAT
130 GCTGCCACAAGCCTCGATCCGACTCGAT
* * * ** *
32163364 CTTAGAC-TGGGAATGAACTCTGTAAGCCTAA-CTCAACCCATTAAACAAGCGTGCGGGCGTTGA
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGC-CAACCCATGAAACAAGCGTGCGGGCACTCA
* * * *
32163427 GCCGACTGGAGAGGCATAATGCGCAAGTCGGGGATCGACCCGGTCCCCCTCTGCGTGCTGTCGGT
64 GCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGT-CCCC-CTGCGTGCTGTCGAT
* *
32163492 CCCGCTGCCACAA-CCTTCGATCCGACTGGGT
127 CCCGCTGCCACAAGCC-TCGATCCGACTCGAT
* * * ** *
32163523 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCTATGAAACGAGCGTGCGGGTGCTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGCACTCAGC
* * * *
32163588 CGACCGAAAAGGCAGAATACGCAAGCCGGGGATC-AGCCTGGTCCCTCCCTGCGTGCT
66 CGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGA-CCCGGT-CC-CCCTGCGTGCT
32163645 ACCGATCCTA
Statistics
Matches: 229, Mismatches: 42, Indels: 18
0.79 0.15 0.06
Matches are distributed among these distances:
156 4 0.02
157 85 0.37
158 7 0.03
159 129 0.56
160 4 0.02
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.19
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGCACTCAGC
CGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTGCGTGCTGTCGATCCCG
CTGCCACAAGCCTCGATCCGACTCGAT
Found at i:32163878 original size:26 final size:26
Alignment explanation
Indices: 32163840--32163892 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
32163830 GGCTCAAAAT
32163840 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
32163866 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
32163892 C
1 C
32163893 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:32164167 original size:159 final size:159
Alignment explanation
Indices: 32163866--32164277 Score: 380
Period size: 159 Copynumber: 2.6 Consensus size: 159
32163856 ACTCCGTATG
* ** * *
32163866 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGCGCTCAGT
1 CTTAGACATGGAATGAACTCCGCATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAGC
* *
32163931 CGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGAGCTGATCCTCCCCTACGTGCTGTCGATCC
66 CGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGAGCCGATCCTCCCCTACGTGCTGCCGATCC
* *
32163996 TACTACCGCAACCCTCAGTCCGGTCTAAT
131 CACTACCACAACCCTCAGTCCGGTCTAAT
* ** * * *
32164025 CTTAGAC-TAGGAATGAACTTCGCATGCCTAAGTTAACCCACAAAATGAGCGTGCGGGTGCTGAG
1 CTTAGACAT-GGAATGAACTCCGCATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAG
* * * *
32164089 CCG-GCTGGAGAGGCATAATGCGCAAGCCGGGGATCG-GCCCGGTCC-CCCTCTGCGTGCTGCCG
65 CCGATC-GGAGAGGCAGAATGCGCAAGCCGGGGATCGAG-CCGATCCTCCC-CTACGTGCTGCCG
* * * * ** ***
32164151 GTCCCGCTGCCACAACCCTCGGTTTGG-CTGGGG
127 ATCCCACTACCACAACCCTCAGTCCGGTCT-AAT
**
32164184 CTTAGACATGGAATGAACTCC-CTATGCCTAAGCCAACCCATGAAACG-GCGTGC--GCGCTCAG
1 CTTAGACATGGAATGAACTCCGC-ATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAG
* * * *
32164245 CCG-GCAGAGAGG-A-AAAGCGCAAGCGGGGGATCG
65 CCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCG
32164278 CCCGGTCGCC
Statistics
Matches: 207, Mismatches: 39, Indels: 20
0.78 0.15 0.08
Matches are distributed among these distances:
153 18 0.09
154 1 0.00
155 6 0.03
156 11 0.05
158 15 0.07
159 155 0.75
160 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.30, T:0.18
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCCGCATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAGC
CGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGAGCCGATCCTCCCCTACGTGCTGCCGATCC
CACTACCACAACCCTCAGTCCGGTCTAAT
Found at i:32164996 original size:159 final size:157
Alignment explanation
Indices: 32164695--32165471 Score: 501
Period size: 159 Copynumber: 4.8 Consensus size: 157
32164685 ACTTCGTATG
* * *
32164695 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGCATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGTGCTCAG
* * * *
32164759 CC-AGTCGGAGAGGCCA-AATACGCAAGCCAGGGACCGGGCCGATCCCCCCCTGCGTGCTGTCGA
65 CCGA-TCGGAGAGG-CATAATGCGCAAGCCAGGGATCGGGCCG-GCCCCCCCTGCGTGCTGTCAA
32164822 TCCTGCTACCGCAACCCTCGGTCCGATTCGAT
127 TCCTGCTACCGCAACCCTCGGTCCGA-TCGAT
* * * * *
32164854 CTTAAACTGGGAATGAACTCCGCATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGTGCTGAAC
1 CTTAGACTGGGAATGAACTCCGCATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGTGCTCAGC
*
32164919 CGATCGAAGAGGCATAATGCGCAAGCCAGGGATCGGGCCGGCCCCCCTCTGCGTGCTGTCAATCC
66 CGATCGGAGAGGCATAATGCGCAAGCCAGGGATCGGGCCGGCCCCCC-CTGCGTGCTGTCAATCC
* * * * * * * **
32164984 CGCTGCCACAACCCTTGGTCTGGCTGGGG
130 TGCTACCGCAACCCTCGGTC-CGATCGAT
* * * *
32165013 CTTAGACAT-GGAATGAACTCC-CAATGCCTAAGCCAACCCACAAAATGGGCGTGTGGGTGCTTA
1 CTTAGAC-TGGGAATGAACTCCGC-ATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGTGCTCA
* * ** ** * * *
32165076 GCCGGTTGGAGAGGCATAATGCGTGAGCTGGGGATC-GGCCAAGTCCCCCCTGCGTGTTGTCAAT
64 GCCGATCGGAGAGGCATAATGCGCAAGCCAGGGATCGGGCC-GGCCCCCCCTGCGTGCTGTCAAT
** *
32165140 CCTGCTATGGCAACCCTCAGTCCGATCTGAT
128 CCTGCTACCGCAACCCTCGGTCCGATC-GAT
* * ** * ** * * ** *
32165171 CTTAGACTGGGGATAAACTTTGTATGCCTAAGTTAA-CCTCAAAACAAGCGTGCGGGCACTTAGC
1 CTTAGACTGGGAATGAACTCCGCATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGTGCTCAGC
* * *** ** * * * * * *
32165235 CGGTCGGAGTGGCATAATAAACAAGCTGGGGATC-AGCTCGATCCCTCTCTGCATGCTGTCGATC
66 CGATCGGAGAGGCATAATGCGCAAGCCAGGGATCGGGC-CG-GCCCCCCCTGCGTGCTGTCAATC
* * * *
32165299 CCGCTACCGGTCTTGCTGCCACAACCCTCGGTCCAGCTGGAG
129 CTGCTA-----C---C-G---CAACCCTCGGTCC-GATCGAT
* * *
32165341 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGCATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGTGCTCAG
** ** * * * * * * * * *
32165405 CCGGCCAAAGAGGTAGAATGCACAAGCCGGGGATTGGCCCGGTCCCCCCTGCATGCTGTCGATCC
65 CCGATCGGAGAGGCATAATGCGCAAGCCAGGGATCGGGCCGGCCCCCCCTGCGTGCTGTCAATCC
32165470 TG
130 TG
32165472 TGGCTGGTCC
Statistics
Matches: 474, Mismatches: 115, Indels: 47
0.75 0.18 0.07
Matches are distributed among these distances:
157 53 0.11
158 92 0.19
159 209 0.44
160 3 0.01
167 1 0.00
170 63 0.13
171 52 0.11
172 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (157 bp):
CTTAGACTGGGAATGAACTCCGCATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGTGCTCAGC
CGATCGGAGAGGCATAATGCGCAAGCCAGGGATCGGGCCGGCCCCCCCTGCGTGCTGTCAATCCT
GCTACCGCAACCCTCGGTCCGATCGAT
Found at i:32165452 original size:328 final size:316
Alignment explanation
Indices: 32164694--32165471 Score: 797
Period size: 328 Copynumber: 2.4 Consensus size: 316
32164684 AACTTCGTAT
32164694 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * *
32164759 CCAGTCGGAGAGGCCAAATACGCAAGCCAGGGACCGGGCCGATCCCCCCCTGCGTGCTGTCGATC
66 CCGGTCGGAGAGG-CAAATGCGCAAGCCGGGGATCGGCCCGGT-CCCCCCTGCGTGCTGTCGATC
* *
32164824 CTGCTACCGCAACCCTCGGTCCGATTCGATCTTAAACTGGGAATGAACTCCGCATGCCTAAGTCA
129 CTGCTACCGCAACCCTCAGTCCGATTCGATCTTAAACTGGGAATAAACTCCGCATGCCTAAGTCA
** ** ***
32164889 ACCCACAAAATGAGCGTGCGGGTGCTGAACCGATCGAAGAGGCATAATGCGCAAGCCAGGGATCG
194 ACCCACAAAACAAGCGTGCGGGCACTGAACCGATCGAAGAGGCATAATAAACAAGCCAGGGATCG
* * * * ** *
32164954 GGCCGGCCCCCCTCTGCGTGCTGTCAATCCCGCTGCCACAACCCTTGGTCTGGCTGGG
259 AGCCGACCCCCCTCTGCATGCTGTCAATCCCGCTGCCACAACCCTCGGTCCAGCTGGA
** * * * * * *
32165012 GCTTAGACATGGAATGAACTCCCAATGCCTAAGCCAACCCACAAAATGGGCGTGTGGGTGCTTAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* ** * ** * *
32165077 CCGGTTGGAGAGGCATAATGCGTGAGCTGGGGATCGGCCAAGTCCCCCCTGCGTGTTGTCAATCC
66 CCGGTCGGAGAGGCA-AATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCC
** * * ** * *
32165142 TGCTATGGCAACCCTCAGTCCGA-TCTGATCTTAGACTGGGGATAAACTTTGTATGCCTAAGTTA
130 TGCTACCGCAACCCTCAGTCCGATTC-GATCTTAAACTGGGAATAAACTCCGCATGCCTAAGTCA
* * * * * * **
32165206 A-CCTCAAAACAAGCGTGCGGGCACTTAGCCGGTCGGAGTGGCATAATAAACAAGCTGGGGATC-
194 ACCCACAAAACAAGCGTGCGGGCACTGAACCGATCGAAGAGGCATAATAAACAAGCCAGGGATCG
* * *
32165269 AGCTCGATCCCTCTCTGCATGCTGTCGATCCCGCTACCGGTCTTGCTGCCACAACCCTCGGTCCA
259 AGC-CGACCCCCCTCTGCATGCTGTC-A-----AT-CC---C--GCTGCCACAACCCTCGGTCCA
32165334 GCTGGA
311 GCTGGA
32165340 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* ** * * * *
32165405 CCGGCCAAAGAGGTAGAATGCACAAGCCGGGGATTGGCCCGGTCCCCCCTGCATGCTGTCGATCC
66 CCGGTCGGAGAGGCA-AATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCC
32165470 TG
130 TG
32165472 TGGCTGGTCC
Statistics
Matches: 364, Mismatches: 81, Indels: 20
0.78 0.17 0.04
Matches are distributed among these distances:
315 2 0.01
316 67 0.18
317 75 0.21
318 85 0.23
322 1 0.00
323 2 0.01
326 1 0.00
328 131 0.36
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (316 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGGTCGGAGAGGCAAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCT
GCTACCGCAACCCTCAGTCCGATTCGATCTTAAACTGGGAATAAACTCCGCATGCCTAAGTCAAC
CCACAAAACAAGCGTGCGGGCACTGAACCGATCGAAGAGGCATAATAAACAAGCCAGGGATCGAG
CCGACCCCCCTCTGCATGCTGTCAATCCCGCTGCCACAACCCTCGGTCCAGCTGGA
Found at i:32165563 original size:26 final size:26
Alignment explanation
Indices: 32165511--32165563 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
32165501 CCAATCCGAT
**
32165511 CTTAGACTGGGAATGAACTTTGAATG
1 CTTAGACTGGGAATGAACTCCGAATG
*
32165537 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGAATG
32165563 C
1 C
32165564 CTGAGCCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGAATG
Found at i:32166463 original size:158 final size:159
Alignment explanation
Indices: 32166167--32166945 Score: 564
Period size: 158 Copynumber: 4.9 Consensus size: 159
32166157 GTGGCTCAAA
* * *
32166167 ATCTTAGACTGGGAATGAACT-CGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCA
1 ATCTTAGACTGGGAATGAACTCCGCATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCA
* * * * * * *
32166231 ACCGATCGGAGAGGCAGAATGTGAAAGCCGGGGACCGAGCTGA-T-CCCCTCCTGCATGCTGTC-
66 GCCGACCGAAGAGGCAGAATGCGTAAGCCGGGGATCG-GCTCAGTCCCCCT-CTGCATGCTGTCA
**
32166293 GATCCTATTACCACAACCCTCGGTCCGGTCCG
129 G-TCCTGCTACCACAACCCTCGGTCCGGTCCG
* * * * *
32166325 ATCTTAGACTGGGAATGAAC-CCGCATGCCTAAGTCAACCCACAAAACGAGCGTGTGGGTGTTGA
1 ATCTTAGACTGGGAATGAACTCCGCATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCA
* * ** *
32166389 GCCGGCCGAAGAGGCATAATGCGTAAGCCGGGGATCGGCTCAGTCCCCCTCTGGGTACTGTCAGT
66 GCCGACCGAAGAGGCAGAATGCGTAAGCCGGGGATCGGCTCAGTCCCCCTCTGCATGCTGTCAGT
* * * * *
32166454 CCCGCTACCATAGCCCTCGGTCTGG-CTGG
131 CCTGCTACCACAACCCTCGGTCCGGTC-CG
** * * *
32166483 GGCTTAGACAT-GGAATGAACTCC-CTATGCCTAAGCCAACCCACAAAACGGGTGTGCGGGTGCT
1 ATCTTAGAC-TGGGAATGAACTCCGC-ATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCT
* * * * *
32166546 CAGTCGATCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGC-CAAGTCCTCC-CTGCATGTTGTC
64 CAGCCGACCGAAGAGGCAGAATGCGTAAGCCGGGGATCGGCTC-AGTCCCCCTCTGCATGCTGTC
* * * * ** *
32166609 AATCCTGCTACCGCAACCCTCAGTTCAATCTG
128 AGTCCTGCTACCACAACCCTCGGTCCGGTCCG
* * * * * *
32166641 ATCTTAGACTGGGGACGAACTCCGTATGCCTAAGTCAA-CCTCAAAACGAGCGTGCGGGCGGTCA
1 ATCTTAGACTGGGAATGAACTCCGCATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCA
** * * * ** * * *
32166705 GTAGGCCGAAGTGGCATAATGCACAAGCTGGGGATCAGC-CCGATCACCCTCTGCATGCTATCGA
66 GCCGACCGAAGAGGCAGAATGCGTAAGCCGGGGATCGGCTCAG-TC-CCC-CT-C-TG----C-A
* * * **
32166769 TCCCGCTGCCAGTCCTGCTGCCACAACCCTCGGTCCTGTTGG
121 T---GCTGTCAGTCCTGCTACCACAACCCTCGGTCCGGTCCG
* * * * *
32166811 GTCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCTACGAAACGAGCATGCGGGCGCTC
1 ATCTTAGAC-TGGGAATGAACTCCGCATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTC
** * * *
32166875 AGCTAACCGAAGAGGTAGAATGCGCAAGCCGGGGATCGGC-CCGATCCCCC-CTGCATGCTGTC-
65 AGCCGACCGAAGAGGCAGAATGCGTAAGCCGGGGATCGGCTCAG-TCCCCCTCTGCATGCTGTCA
32166937 GATCCTGCT
129 G-TCCTGCT
32166946 GTTGGTCCTG
Statistics
Matches: 482, Mismatches: 110, Indels: 58
0.74 0.17 0.09
Matches are distributed among these distances:
156 1 0.00
157 60 0.12
158 203 0.42
159 86 0.18
161 3 0.01
162 3 0.01
166 3 0.01
167 3 0.01
169 1 0.00
170 62 0.13
171 57 0.12
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.19
Consensus pattern (159 bp):
ATCTTAGACTGGGAATGAACTCCGCATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCA
GCCGACCGAAGAGGCAGAATGCGTAAGCCGGGGATCGGCTCAGTCCCCCTCTGCATGCTGTCAGT
CCTGCTACCACAACCCTCGGTCCGGTCCG
Found at i:32166929 original size:328 final size:315
Alignment explanation
Indices: 32166168--32166945 Score: 830
Period size: 328 Copynumber: 2.4 Consensus size: 315
32166158 TGGCTCAAAA
*
32166168 TCTTAGAC-TGGGAATGAACT-CGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCA
1 TCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * *
32166231 ACCGATCGGAGAGGCAGAATGTGAAAGCCGGGGACCGAGCTGATCCCCTCCTGCATGCTGTCGAT
65 GCTGATCGGAGAGGCAGAATGCGAAAGCCGGGGATCG-GCCGATCCCC-CCTGCATGCTGTCGAT
** * ** *
32166296 CCTATTACCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACCCGCATGCCTAAGTCA
128 CCTGCTACCACAACCCTCAGTCCAATCCGATCTTAGACTGGGAACGAACCCGCATGCCTAAGTCA
* * * * * ** *
32166361 ACCCACAAAACGAGCGTGTGGGTGTTGAGCCGGCCGAAGAGGCATAATGCGTAAGCCGGGGATCG
193 ACCCACAAAACGAGCGTGCGGGCGGTCAGCAGGCCGAAGAGGCATAATGCACAAGCCGGGGATCA
* * * * *
32166426 GCTCAGTCCCCCTCTGGGTACTGTCAGTCCCGCTACCATAGCCCTCGGTCTGGCTGGG
258 GCCCAGTCACCCTCTGGCTACTGTCAGTCCCGCTACCACAACCCTCGGTCTGGCTGGG
* * * * * *
32166484 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGTGTGCGGGTGCTCAG
1 TCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * *
32166549 -TCGATCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCAAGTCCTCCCTGCATGTTGTCAATC
66 CT-GATCGGAGAGGCAGAATGCGAAAGCCGGGGATCGGCCGA-TCCCCCCTGCATGCTGTCGATC
* * * * *
32166613 CTGCTACCGCAACCCTCAGTTCAATCTGATCTTAGACTGGGGACGAACTCCGTATGCCTAAGTCA
129 CTGCTACCACAACCCTCAGTCCAATCCGATCTTAGACTGGGAACGAAC-CCGCATGCCTAAGTCA
* * * *
32166678 A-CCTCAAAACGAGCGTGCGGGCGGTCAGTAGGCCGAAGTGGCATAATGCACAAGCTGGGGATCA
193 ACCCACAAAACGAGCGTGCGGGCGGTCAGCAGGCCGAAGAGGCATAATGCACAAGCCGGGGATCA
* *
32166742 GCCC-GATCACCCTCTGCATGCTATCGATCCCGCTGCCAGTCCTGCTGCCACAACCCTCGGTCCT
258 GCCCAG-TCACCCTCTG---GCTA-C--T---G-T--CAGTCCCGCTACCACAACCCTCGGT-CT
*
32166806 -GTTGGG
309 GGCTGGG
* *
32166812 TCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCTACGAAACGAGCATGCGGGCGCTCAG
1 TCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * *
32166877 CTAACCGAAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCATGCTGTCGATCC
66 CTGATCGGAGAGGCAGAATGCGAAAGCCGGGGATCGG-CCGATCCCCCCTGCATGCTGTCGATCC
32166942 TGCT
130 TGCT
32166946 GTTGGTCCTG
Statistics
Matches: 376, Mismatches: 65, Indels: 30
0.80 0.14 0.06
Matches are distributed among these distances:
315 1 0.00
316 136 0.36
317 89 0.24
319 3 0.01
320 1 0.00
322 1 0.00
325 1 0.00
326 1 0.00
328 137 0.36
329 6 0.02
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (315 bp):
TCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CTGATCGGAGAGGCAGAATGCGAAAGCCGGGGATCGGCCGATCCCCCCTGCATGCTGTCGATCCT
GCTACCACAACCCTCAGTCCAATCCGATCTTAGACTGGGAACGAACCCGCATGCCTAAGTCAACC
CACAAAACGAGCGTGCGGGCGGTCAGCAGGCCGAAGAGGCATAATGCACAAGCCGGGGATCAGCC
CAGTCACCCTCTGGCTACTGTCAGTCCCGCTACCACAACCCTCGGTCTGGCTGGG
Found at i:32166988 original size:170 final size:170
Alignment explanation
Indices: 32166611--32167001 Score: 455
Period size: 170 Copynumber: 2.3 Consensus size: 170
32166601 ATGTTGTCAA
* * * * * *
32166611 TCCTGCTACCGCAACCCTCAGTTCAATCTGATCTTAGACTGGGGACGAACTCCGTATGCCTAAGT
1 TCCTGCTACCGCAACCCTCAGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * * * * *
32166676 CAACCTCAAAACGAGCGTGCGGGCGGTCAGTAGGCCGAAGTGGCATAATGCACAAGCTGGGGATC
66 CAACCTCAAAACGAGCATGCGGGCGCTCAGTAGACCGAAGAGGCAGAATGCACAAGCCGGGGATC
*
32166741 AGCCCGATCACCCTCTGCATGCTATCGATCCCGCTGCCAG
131 AGCCCGATCACCCCCTGCATGCTATCGATCCCGCTGCCAG
* * * * ** *
32166781 TCCTGCTGCCACAACCCTCGGTCCTGTTGGGTCTTAGACAT-GGAATGAACTCCGTATGCCTAAG
1 TCCTGCTACCGCAACCCTCAGTCCAGTCCGATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAG
* * *
32166845 CCAACCTACGAAACGAGCATGCGGGCGCTCAGCTA-ACCGAAGAGGTAGAATGCGCAAGCCGGGG
65 CCAACCT-CAAAACGAGCATGCGGGCGCTCAG-TAGACCGAAGAGGCAGAATGCACAAGCCGGGG
* * * ***
32166909 ATCGGCCCGATC-CCCCCTGCATGCTGTCGATCCTGCTGTTGG
128 ATCAGCCCGATCACCCCCTGCATGCTATCGATCCCGCTGCCAG
* *
32166951 TCCTGCTACCGCAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACT
1 TCCTGCTACCGCAACCCTCAGTCCAGTCCGATCTTAGACTGGGAATGAACT
32167002 TCGAATGCTT
Statistics
Matches: 181, Mismatches: 36, Indels: 8
0.80 0.16 0.04
Matches are distributed among these distances:
169 1 0.01
170 122 0.67
171 56 0.31
172 2 0.01
ACGTcount: A:0.23, C:0.31, G:0.26, T:0.20
Consensus pattern (170 bp):
TCCTGCTACCGCAACCCTCAGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
CAACCTCAAAACGAGCATGCGGGCGCTCAGTAGACCGAAGAGGCAGAATGCACAAGCCGGGGATC
AGCCCGATCACCCCCTGCATGCTATCGATCCCGCTGCCAG
Found at i:32167035 original size:26 final size:26
Alignment explanation
Indices: 32166983--32167035 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
32166973 CCGGTCCAAT
*
32166983 CTTAGACTGGGAATGAACTTCGAATG
1 CTTAGACTGGGAATGAACTCCGAATG
*
32167009 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGAATG
32167035 C
1 C
32167036 CTAAACCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGAATG
Found at i:32167970 original size:170 final size:170
Alignment explanation
Indices: 32167661--32168048 Score: 523
Period size: 170 Copynumber: 2.3 Consensus size: 170
32167651 CCTACTACCG
* * *
32167661 CAACCCTCAGTCCGATCCGATCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCTCAAAA
1 CAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCTCAAAA
* ** * * * *
32167726 CGAGCGTGCGAGCCCTCAGCTGGTCGGAGTGGCATAATGCACAAGCCGGGGATCAGCCTGATCCC
66 CGAGCGTGCGAGCCCTCAGCCGACCGAAGAGGCAGAATGCACAAGCCGGGGATCAGCCCGATCCC
32167791 CCTCTGCATGCTGTCGATCCCGCTGTCGGTCCTGCTGCCA
131 CCTCTGCATGCTGTCGATCCCGCTGTCGGTCCTGCTGCCA
* *
32167831 CAACCCTCGGTCCGA-CTGGGTCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACC-CAC
1 CAACCCTCGGTCCGATC-CGATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCTCA-
* * * * *
32167893 GAAACGAGCGTGCGGGCGCTCAGCCGACCGAAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGA
63 -AAACGAGCGTGCGAGCCCTCAGCCGACCGAAGAGGCAGAATGCACAAGCCGGGGATCAGCCCGA
* * *
32167958 TCCCCC-CTGCATGCTGTCGATCCTGCTGTTGGTCCTGCTGCCG
127 TCCCCCTCTGCATGCTGTCGATCCCGCTGTCGGTCCTGCTGCCA
*
32168001 CAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGAATGC
1 CAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGC
32168049 TTAGACATGG
Statistics
Matches: 189, Mismatches: 23, Indels: 12
0.84 0.10 0.05
Matches are distributed among these distances:
169 4 0.02
170 125 0.66
171 60 0.32
ACGTcount: A:0.21, C:0.33, G:0.27, T:0.19
Consensus pattern (170 bp):
CAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCTCAAAA
CGAGCGTGCGAGCCCTCAGCCGACCGAAGAGGCAGAATGCACAAGCCGGGGATCAGCCCGATCCC
CCTCTGCATGCTGTCGATCCCGCTGTCGGTCCTGCTGCCA
Found at i:32168052 original size:26 final size:26
Alignment explanation
Indices: 32168022--32168074 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32168012 CCGATCCGAT
32168022 CTTAGAC-TGGGAATGAACTCCGAATG
1 CTTAGACAT-GGAATGAACTCCGAATG
*
32168048 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGAATG
32168074 C
1 C
32168075 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGAATG
Found at i:32168506 original size:12 final size:12
Alignment explanation
Indices: 32168491--32168525 Score: 61
Period size: 12 Copynumber: 2.9 Consensus size: 12
32168481 GTGCTACCGA
*
32168491 TCCTGCTGCTGG
1 TCCTACTGCTGG
32168503 TCCTACTGCTGG
1 TCCTACTGCTGG
32168515 TCCTACTGCTG
1 TCCTACTGCTG
32168526 CAGCCCTTGG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.06, C:0.34, G:0.26, T:0.34
Consensus pattern (12 bp):
TCCTACTGCTGG
Found at i:32169863 original size:159 final size:156
Alignment explanation
Indices: 32169510--32170001 Score: 533
Period size: 158 Copynumber: 3.1 Consensus size: 156
32169500 GGCACAAAAT
* *
32169510 CTTAGACTGGGAATGAACT-CGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGG-GCTCAGC
* * * * *
32169574 CGGTCGGAGAGGCAGAATGTGCAAGCCAGGGACCGGGCCGATCCCCCCTGCATGCTGTCGATCCT
65 CGG-CGGAGAGGCAGAATGTGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCCC
* * * *
32169639 GCTACCGCAACCCTCGGTCCGGTCCGAT
129 ACTACCACAACCCTCAGTCCGGTCCGAG
* * * * *
32169667 CTTAGACTGGGAATGAACTCCGC-ATGCCTAAGTCAACCCACAAAACGAGTGTGCGGGTGTTGAG
1 CTTAGACTGGGAATGAACTCC-CTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGG-GCTCAG
* * * * *
32169731 CCGGCCGGAGAGGCATAATGCGCAAGCCGGGGATCGACCCGATCCCCCTCTACGTGCTGTCGGTC
64 CCGG-CGGAGAGGCAGAATGTGCAAGCCGGGGATCGGCCCGATCCCCC-CTGCGTGCTGTCGATC
* * *
32169796 CCACTGCCACAACCCTCAGTCTGG-CTGGAG
127 CCACTACCACAACCCTCAGTCCGGTC-CGAG
*
32169826 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGGACTCAG
1 CTTAGAC-TGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGG-CTCAG
* * * * *
32169890 TCGGCAGAGAGGCAGAAAGTGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTATCGATCCT
64 CCGGCGGAGAGGCAGAATGTGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCCC
** ** * * * *
32169955 ACTGTCGTAACCCTCGGTCCAGTCTGAT
129 ACTACCACAACCCTCAGTCCGGTCCGAG
32169983 CTTAGACTGGGAATGAACT
1 CTTAGACTGGGAATGAACT
32170002 ACGTATGCTT
Statistics
Matches: 276, Mismatches: 50, Indels: 18
0.80 0.15 0.05
Matches are distributed among these distances:
156 1 0.00
157 68 0.25
158 118 0.43
159 88 0.32
160 1 0.00
ACGTcount: A:0.22, C:0.31, G:0.29, T:0.18
Consensus pattern (156 bp):
CTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGGCTCAGCC
GGCGGAGAGGCAGAATGTGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCCCAC
TACCACAACCCTCAGTCCGGTCCGAG
Found at i:32170308 original size:816 final size:813
Alignment explanation
Indices: 32168503--32171475 Score: 4332
Period size: 817 Copynumber: 3.6 Consensus size: 813
32168493 CTGCTGCTGG
* * ** *
32168503 TCCTACTGCTGGTCCTACTGCTGCAGCCCTTGGTCCAGTCCAATCTTTGACTGGGAATGAACTCC
1 TCCTACTGCTGGTCCTACTGCCGCAACCCTTGGTCCAGTCTGATCTTAGACTGGGAATGAACTCC
* ** *
32168568 GTATGCCTAGACATGGGCTTCGAACACTTAGGCTCTCCGACGATGCTCCGGTGATGGTGCCCCGG
66 GTATGCCTAGACATGGGCTCCGAATGCTTAGGCTCTCCGACGATGCTCCGATGATGGTGCCCCGG
* * * *
32168633 GCGAAAAAAATATGGCACCAGCACATGCCCAAGCCCATCATGTGCACTGCGGCACAAAATCTTAG
131 GTGAAAAAAATACGGCACCAGCACATGCCCAAGCCCAGCATGTGCACTGTGGCACAAAATCTTAG
* * * ** * * *
32168698 ACTGGGAATGAACTGGTATGCCTAATCCAACCCACAAAATGAGGGTATGGGTGCTCAGCTGATCG
196 ACTGGGAATGAACTCGTATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGCGCTCAGCCGGTCG
* **
32168763 GAGAGGCAGAATGCGCAAGCTTGGGACCGGGCCGATCCCCCCTGCATGCTGTCGATCCTGCTACC
261 GAGAGGCAGAATGTGCAAGCCAGGGACCGGGCCGATCCCCCCTGCATGCTGTCGATCCTGCTACC
* * * *
32168828 GCAACCCTCGATCCGGTTCGATCTTAGACTGGGAATGAACTTCGGATGCCTAAGTCAACCCACAA
326 ACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTTCGCATGCCTAAGTCAACCCACAA
* * * *
32168893 AACGAGCGTGCGAGTGCTGAGCCGGACGAAGAGGCATAATGCGCAAGCCGGGGATCGACCCGGTC
391 AACGAGTGTGCGGGTGTTGAGCCGGCCGAAGAGGCATAATGCGCAAGCCGGGGATCGACCCGGTC
* * *
32168958 CCCCTCTGCGTGCTGCCGGTCCCGCTGCCACAACCCTCGTTCTGGCTGGGGCTTAGACATGGAAT
456 CCCCTCTACGTGCTGCCGGTCCCACTGCCACAACCCTCG-TCTGGCTGGAGCTTAGACATGGAAT
*
32169023 GAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGTGCTCAGTCGGCCAGAGAGGCA
520 GAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGG-GCTCAGTCGGCCAGAGAGGCA
* * *
32169088 GAAAGCGCAAGCCGGGGATCGGCCCTGTCCCCCCTACGTGCTACCGATCCTACTGCCGTAACCCT
584 GAAAGTGCAAGCCGGGGATCGGCCC-GTCCCCCCTGCGTGCTACCGATCCTACTGTCGTAACCCT
* * * *
32169153 CAGTTCGATCCGATCTTAGACTGGGAATGAACTACATATGCTTAGACTAGGGATGAACTCTGTAT
648 CGGTCCG-TCCGATCTTAGACTGGGAATGAACTACGTATGCTTAGACTAGGGATGAACTTTGTAT
* * *
32169218 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGACCAGAGAGGCAAAATGCATAAG
712 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGAGGCAGAATGCACAAG
* * *
32169283 TCGGGGATCGGCCTGGTCCTCCCCTGCGTGCTATCGA
777 CCGAGGATCGGCCTGGTCCTCCCCTGCGTGCTACCGA
* ** * *
32169320 TCCTGCTGCTGGTCCTACTGTAGTAACCCTTGGTCCAGTCTGATCTTAGACTGGGAATGAACCCC
1 TCCTACTGCTGGTCCTACTGCCGCAACCCTTGGTCCAGTCTGATCTTAGACTGGGAATGAACTCC
*
32169385 GTATGCCTAGACATGGGCTCCGGATGCTTAGGCTCTCCGACGATGCTCCGATGATGGTGCCCCGG
66 GTATGCCTAGACATGGGCTCCGAATGCTTAGGCTCTCCGACGATGCTCCGATGATGGTGCCCCGG
32169450 GTGAAAAAAATACGGCACCAGCACATGCCCAAGCCCAGCATGTGCACTGTGGCACAAAATCTTAG
131 GTGAAAAAAATACGGCACCAGCACATGCCCAAGCCCAGCATGTGCACTGTGGCACAAAATCTTAG
*
32169515 ACTGGGAATGAACTCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGTCG
196 ACTGGGAATGAACTCGTATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGCGCTCAGCCGGTCG
32169580 GAGAGGCAGAATGTGCAAGCCAGGGACCGGGCCGATCCCCCCTGCATGCTGTCGATCCTGCTACC
261 GAGAGGCAGAATGTGCAAGCCAGGGACCGGGCCGATCCCCCCTGCATGCTGTCGATCCTGCTACC
* *
32169645 GCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGCATGCCTAAGTCAACCCACAA
326 ACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTTCGCATGCCTAAGTCAACCCACAA
* *
32169710 AACGAGTGTGCGGGTGTTGAGCCGGCCGGAGAGGCATAATGCGCAAGCCGGGGATCGACCCGATC
391 AACGAGTGTGCGGGTGTTGAGCCGGCCGAAGAGGCATAATGCGCAAGCCGGGGATCGACCCGGTC
*
32169775 CCCCTCTACGTGCTGTCGGTCCCACTGCCACAACCCTCAGTCTGGCTGGAGCTTAGACATGGAAT
456 CCCCTCTACGTGCTGCCGGTCCCACTGCCACAACCCTC-GTCTGGCTGGAGCTTAGACATGGAAT
32169840 GAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGGACTCAGTCGG-CAGAGAGGCA
520 GAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGG-CTCAGTCGGCCAGAGAGGCA
*
32169904 GAAAGTGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTATCGATCCTACTGTCGTAACCCT
584 GAAAGTGCAAGCCGGGGATCGGCCCG-TCCCCCCTGCGTGCTACCGATCCTACTGTCGTAACCCT
*
32169969 CGGTCCAGTCTGATCTTAGACTGGGAATGAACTACGTATGCTTAGACTAGGGATGAACTTTGTAT
648 CGGTCC-GTCCGATCTTAGACTGGGAATGAACTACGTATGCTTAGACTAGGGATGAACTTTGTAT
* * *
32170034 GCCTAAGTCAACCCACGAAAAGAGCGTGCGGGCGCTCAGCCGACTAGAGAGGTAGAATGCACAAG
712 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGAGGCAGAATGCACAAG
* *
32170099 CCGACGATCGGCCTGGTCCTCCCCTGCGTGCTACCAA
777 CCGAGGATCGGCCTGGTCCTCCCCTGCGTGCTACCGA
* ***
32170136 TCCTACTGCTGGTCCTACTGCCGTAACCCTTGGTTTGGTCTGATCTTAGACTGGGAATGAACTCC
1 TCCTACTGCTGGTCCTACTGCCGCAACCCTTGGTCCAGTCTGATCTTAGACTGGGAATGAACTCC
*
32170201 GTATGCCTAGACATGGGCTCCGAATGCTTAGGCTCTCCGACGATGCTCCGATGATGGTGTCCCGG
66 GTATGCCTAGACATGGGCTCCGAATGCTTAGGCTCTCCGACGATGCTCCGATGATGGTGCCCCGG
*
32170266 GTGAAAAAAATACGGCACCAGCACATGCCCAAGCCTAGCATGTGCACTGTGGCACAAAATCTTAG
131 GTGAAAAAAATACGGCACCAGCACATGCCCAAGCCCAGCATGTGCACTGTGGCACAAAATCTTAG
* * *
32170331 ACTAGGAATGCACTCGTATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGCGCTCAGCCGGTTG
196 ACTGGGAATGAACTCGTATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGCGCTCAGCCGGTCG
* * *
32170396 GAGAGGTAGAATGTGCAAGCCGGGGACCGGGTCGATCCCCCCTGCATGCTGTCGATCCTGCTACC
261 GAGAGGCAGAATGTGCAAGCCAGGGACCGGGCCGATCCCCCCTGCATGCTGTCGATCCTGCTACC
*
32170461 ACAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTTCGCATGCCTAAGTCAACCCACAA
326 ACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTTCGCATGCCTAAGTCAACCCACAA
*
32170526 AACGAGTGTGCGGGTGTTGAGCCGGCCGGAGAGGCATAATGCGCAAGCCGGGGATCGACCCGGTC
391 AACGAGTGTGCGGGTGTTGAGCCGGCCGAAGAGGCATAATGCGCAAGCCGGGGATCGACCCGGTC
* *
32170591 CCCCTCTACGTGCTGCCGGTCCCACTGCCACAACCCTTGGTCTGGCTAGAGCTTAGACATGGAAT
456 CCCCTCTACGTGCTGCCGGTCCCACTGCCACAACCC-TCGTCTGGCTGGAGCTTAGACATGGAAT
* *
32170656 GAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCGGGGGCTCGGTCGGCCAGAGAGGCA
520 GAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGC-GGGGCTCAGTCGGCCAGAGAGGCA
* **
32170721 GAAAGTGCAAGCCGGGGATCGCCCCGGTCCCCCCTGCGTGCTACCGATCCTGTTGTCGTAACCCT
584 GAAAGTGCAAGCCGGGGATCGGCCC-GTCCCCCCTGCGTGCTACCGATCCTACTGTCGTAACCCT
* *
32170786 CGGTCTGGTCCGATCTTAGACTAGGAATGAACTACGTATGCTTAGACTAGGGATGAACTTTGTAT
648 CGGTC-CGTCCGATCTTAGACTGGGAATGAACTACGTATGCTTAGACTAGGGATGAACTTTGTAT
*
32170851 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGACCAGAGAGGCAGAATGCACAAG
712 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGAGGCAGAATGCACAAG
*
32170916 CCGAGGATCGGCCTGGTCC-CCCTCTACGTGCTACCGA
777 CCGAGGATCGGCCTGGTCCTCCC-CTGCGTGCTACCGA
*
32170953 TCCTATTGCTGGTCCTACTGCCGCAACCCTTGGTCCAGTCTGATCTTAGACTGGGAATGAACTCC
1 TCCTACTGCTGGTCCTACTGCCGCAACCCTTGGTCCAGTCTGATCTTAGACTGGGAATGAACTCC
* * *
32171018 GTAAGCCTAGACATGGGCTCCGAATGCTTAGGCTTTCTGGCGATGCTCCGGTAATGCTCCGGTGA
66 GTATGCCTAGACATGGGCTCCGAATGCTTAGGC--TCT-CCGA-----C-G--ATGCTCCGATGA
* * ** * *
32171083 CGGTGCCCCGGGTGAAAAAAATATGGCACGGGCACATGACCAAGCCCAGCATGTGCACTGTGGCT
120 TGGTGCCCCGGGTGAAAAAAATACGGCACCAGCACATGCCCAAGCCCAGCATGTGCACTGTGGCA
32171148 CAAAATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCTATATGCCTAAGC
185 CAAAATCTTAGACTGGGAATGAACTC-GTATGC-----C-T--AA-G--C-C-A-A---C----C
* *
32171213 CAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGTCGAAGAGGCAGAATGTGCAAGCTAGGGAC
228 C-A--CA--AAATGAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGTGCAAGCCAGGGAC
* * * * * * *
32171278 CGGCCCGGTCCCCCCTGCCTGTTGTCGATCCTGCTGCCACAACCCTTGGTCCGGTCTGATCTTAG
288 CGGGCCGATCCCCCCTGCATGCTGTCGATCCTGCTACCACAACCCTCGGTCCGGTCCGATCTTAG
* * * * * * *
32171343 ACTAGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGGGTGTGGGTGCTTGA-TCGAC
353 ACTGGGAATGAACTTCGCATGCCTAAGTCAACCCACAAAACGAGTGTGCGGGTG-TTGAGCCGGC
* * * * * *
32171407 CGAAGAGGCATAATGCACAAGTCGGGGATCAACCCGGTCCCCCTCTGCGTGCTGCCGATCCCATT
417 CGAAGAGGCATAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTCTACGTGCTGCCGGTCCCACT
32171472 GCCA
482 GCCA
32171476 GTCCTACTAC
Statistics
Matches: 1956, Mismatches: 151, Indels: 60
0.90 0.07 0.03
Matches are distributed among these distances:
815 1 0.00
816 763 0.39
817 844 0.43
818 2 0.00
819 3 0.00
820 3 0.00
825 1 0.00
826 1 0.00
828 92 0.05
829 6 0.00
834 1 0.00
835 1 0.00
837 2 0.00
838 1 0.00
840 1 0.00
841 1 0.00
842 1 0.00
843 1 0.00
846 1 0.00
850 2 0.00
851 1 0.00
853 2 0.00
855 221 0.11
856 4 0.00
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.20
Consensus pattern (813 bp):
TCCTACTGCTGGTCCTACTGCCGCAACCCTTGGTCCAGTCTGATCTTAGACTGGGAATGAACTCC
GTATGCCTAGACATGGGCTCCGAATGCTTAGGCTCTCCGACGATGCTCCGATGATGGTGCCCCGG
GTGAAAAAAATACGGCACCAGCACATGCCCAAGCCCAGCATGTGCACTGTGGCACAAAATCTTAG
ACTGGGAATGAACTCGTATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGCGCTCAGCCGGTCG
GAGAGGCAGAATGTGCAAGCCAGGGACCGGGCCGATCCCCCCTGCATGCTGTCGATCCTGCTACC
ACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTTCGCATGCCTAAGTCAACCCACAA
AACGAGTGTGCGGGTGTTGAGCCGGCCGAAGAGGCATAATGCGCAAGCCGGGGATCGACCCGGTC
CCCCTCTACGTGCTGCCGGTCCCACTGCCACAACCCTCGTCTGGCTGGAGCTTAGACATGGAATG
AACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGGCTCAGTCGGCCAGAGAGGCAGA
AAGTGCAAGCCGGGGATCGGCCCGTCCCCCCTGCGTGCTACCGATCCTACTGTCGTAACCCTCGG
TCCGTCCGATCTTAGACTGGGAATGAACTACGTATGCTTAGACTAGGGATGAACTTTGTATGCCT
AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGAGGCAGAATGCACAAGCCGA
GGATCGGCCTGGTCCTCCCCTGCGTGCTACCGA
Found at i:32170683 original size:159 final size:158
Alignment explanation
Indices: 32170326--32170770 Score: 450
Period size: 159 Copynumber: 2.8 Consensus size: 158
32170316 GGCACAAAAT
* * * * *
32170326 CTTAGACTAGGAATGCACT-CGTATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGCGCTCAGC
1 CTTAGACTAGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGTTGAGC
** * * *** * * * *
32170390 CGGTTGGAGAGGTAGAATGTGCAAGCCGGGGACCGGGTCGATCCCCCCTGCATGCTGTCGATCCT
66 CGGCCGGAGAGGCAGAATGTGCAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTGCCGATCCC
* * *
32170455 GCTACCACAACCCTCAGTCCGGTCCGAT
131 ACTACCACAACCCTCAGTCCGGTCAGAG
* * * * *
32170483 CTTAGACTGGGAATGAACTTCGC-ATGCCTAAGTCAACCCACAAAACGAGTGTGCGGGTGTTGAG
1 CTTAGACTAGGAATGAAC-TCCCTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGTTGAG
* * * *
32170547 CCGGCCGGAGAGGCATAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTCTACGTGCTGCCGGTC
65 CCGGCCGGAGAGGCAGAATGTGCAAGCCGGGGATCGACCCGGTCCCCC-CTGCGTGCTGCCGATC
* ** *
32170612 CCACTGCCACAACCCTTGGTCTGG-CTAGAG
129 CCACTACCACAACCCTCAGTCCGGTC-AGAG
* * *
32170642 CTTAGAC-ATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCGGGGGCTCG-
1 CTTAGACTA-GGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCG-TTGA
* * * * *
32170705 GTCGGCCAGAGAGGCAGAAAGTGCAAGCCGGGGATCGCCCCGGTCCCCCCTGCGTGCTACCGATC
64 GCCGGCCGGAGAGGCAGAATGTGCAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTGCCGATC
32170770 C
129 C
32170771 TGTTGTCGTA
Statistics
Matches: 233, Mismatches: 48, Indels: 13
0.79 0.16 0.04
Matches are distributed among these distances:
157 16 0.07
158 92 0.39
159 123 0.53
160 2 0.01
ACGTcount: A:0.22, C:0.32, G:0.29, T:0.17
Consensus pattern (158 bp):
CTTAGACTAGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGTTGAGC
CGGCCGGAGAGGCAGAATGTGCAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTGCCGATCCC
ACTACCACAACCCTCAGTCCGGTCAGAG
Found at i:32171192 original size:26 final size:26
Alignment explanation
Indices: 32171154--32171206 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32171144 GGCTCAAAAT
*
32171154 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTATATG
32171180 CTTAGACAT-GGAATGAACTCTATATG
1 CTTAGAC-TGGGAATGAACTCTATATG
32171206 C
1 C
32171207 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTATATG
Found at i:32172044 original size:158 final size:158
Alignment explanation
Indices: 32171721--32172065 Score: 358
Period size: 158 Copynumber: 2.2 Consensus size: 158
32171711 TGAACTCTGT
* * *
32171721 AAGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGTGTGCGGGCACTC
1 AAGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAAGAGCGTGCGGACACTC
* * * * *
32171786 AACCGACCGAAAAGGCAGAATGTGCAAGCCGAGGATCAGCCCGGTCCCCCTTTGCGTGCTGTCGG
66 AACCGACCGAAAAGGCAGAATGCGCAAGCCGAGGATCAGCCCGATCCCCCTTTGCATACTGTCGA
* * * * * *
32171851 TCCCGCTGCCATAACCCTTGGTCTGATG
131 TCCCGCTACCACAACCCTCGATCAGATC
** * *
32171879 GGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAG-GCGTGCGGACGCT
1 AAGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAA-AGAGCGTGCGGACACT
* * * * * * *
32171943 C-ACCTGGCCGGAGAGGTAGAATGCGTAAGTCGAGGATCGGCCCGATCCCCC-TTGCATACTGTC
65 CAACC-GACCGAAAAGGCAGAATGCGCAAGCCGAGGATCAGCCCGATCCCCCTTTGCATACTGTC
* *
32172006 GATCCTGCTACCGCAACCCTCGATCCAG-TCC
129 GATCCCGCTACCACAACCCTCGAT-CAGAT-C
* *
32172037 AATCTTAGAC-TGGGATGAACTCCGTATGC
1 AAGCTTAGACATGGAATGAACTCCGTATGC
32172066 TTAGACTGGG
Statistics
Matches: 151, Mismatches: 32, Indels: 9
0.79 0.17 0.05
Matches are distributed among these distances:
157 48 0.32
158 102 0.68
159 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (158 bp):
AAGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAAGAGCGTGCGGACACTC
AACCGACCGAAAAGGCAGAATGCGCAAGCCGAGGATCAGCCCGATCCCCCTTTGCATACTGTCGA
TCCCGCTACCACAACCCTCGATCAGATC
Done.