Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 351 of 402
Found at i:32172074 original size:25 final size:26
Alignment explanation
Indices: 32172040--32172091 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
32172030 CCAGTCCAAT
*
32172040 CTTAGACT-GGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCATATG
32172065 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGGATGAACTCCATATG
32172091 C
1 C
32172092 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 8 0.32
26 17 0.68
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCATATG
Found at i:32172785 original size:26 final size:26
Alignment explanation
Indices: 32172745--32172794 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
32172735 CAGTTCGATC
32172745 TTAGACAGGGAATGAACTCCGTATGT
1 TTAGACAGGGAATGAACTCCGTATGT
* *
32172771 TTAGACTGGGGATGAACTCCGTAT
1 TTAGACAGGGAATGAACTCCGTAT
32172795 TCTTAAGTCA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.28
Consensus pattern (26 bp):
TTAGACAGGGAATGAACTCCGTATGT
Found at i:32174268 original size:159 final size:157
Alignment explanation
Indices: 32173844--32174272 Score: 409
Period size: 159 Copynumber: 2.7 Consensus size: 157
32173834 TCCATATGCC
* ** *
32173844 TAGATATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGTGCTCAGCCT
1 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTA-GGGCACTCAGCCG
* * * * * *
32173909 A-CTGGGGAGGCAAAATGCGCAAG-TCAGAGACCGGCCCGGTCCCCCCTGCATGCTGTCCGTCCT
65 ATC-GGAGAGGCAAAATGCGCAAGCT-AGGGATCGGCTCGGTCCCCCCTACATGCTGACCGTCCT
** * *
32173972 GCTGCCGTAACCCTCAGTCCGGTCCGATCT
128 GCTGCCACAACCCTCAGTCCAGTCCGAGCT
* * * * * * *
32174002 TAGAC-TAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGATCATTCGGGCACTGAGCC
1 TAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGC-GTAGGGCACTCAGCC
* * * * * *
32174066 GATCGGAGAGACATAATGCGCAAGCCAGGAATTGGCTCAGTCCCCCTCTACATGCT-ACCGGTCC
64 GATCGGAGAGGCAAAATGCGCAAGCTAGGGATCGGCTCGGTCCCCC-CTACATGCTGACC-GTCC
** *
32174130 TGCTGCCACAACCCTC-GATCCAGTTGGGGCT
127 TGCTGCCACAACCCTCAG-TCCAGTCCGAGCT
* * *
32174161 TAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGAGGGCACTCAACCG
1 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGT-AGGGCACTCAGCCG
* * * *
32174226 ATCGGAGAGGCAGAATGTGCAAGCTGGGGATCAGCTCGGTCCCCCCT
65 ATCGGAGAGGCAAAATGCGCAAGCTAGGGATCGGCTCGGTCCCCCCT
32174273 GCGTGCTATC
Statistics
Matches: 213, Mismatches: 49, Indels: 18
0.76 0.17 0.06
Matches are distributed among these distances:
157 1 0.00
158 88 0.41
159 123 0.58
160 1 0.00
ACGTcount: A:0.25, C:0.31, G:0.26, T:0.19
Consensus pattern (157 bp):
TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTAGGGCACTCAGCCGA
TCGGAGAGGCAAAATGCGCAAGCTAGGGATCGGCTCGGTCCCCCCTACATGCTGACCGTCCTGCT
GCCACAACCCTCAGTCCAGTCCGAGCT
Found at i:32174646 original size:26 final size:26
Alignment explanation
Indices: 32174596--32174647 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
32174586 GGCTCAAACT
**
32174596 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
32174622 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
32174648 TCAAATCTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:32174929 original size:26 final size:26
Alignment explanation
Indices: 32174888--32174939 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
32174878 CTGATCTGAT
32174888 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
32174914 CTTAGACTAGGG-ATGAACTCCATATG
1 CTTAGACT-GGGAATGAACTCCATATG
32174940 AATAAGTCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:32175114 original size:26 final size:26
Alignment explanation
Indices: 32175085--32175137 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
32175075 CTGATCCGAT
*
32175085 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
32175111 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
32175137 C
1 C
32175138 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:32175562 original size:159 final size:157
Alignment explanation
Indices: 32175110--32175563 Score: 432
Period size: 159 Copynumber: 2.9 Consensus size: 157
32175100 AACTCCGTAT
* * *
32175110 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGCGCTCAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTCCGGGCGCTCAG
* ** * *
32175175 CC-AGCCGGAGAGGCCGAATGCATAAGTCGAGGACCGGTCCGAT-CCCCCCTGCGTGCTGTCGAT
66 CCGA-CCGAAGAGGCAAAATGCGTAAGTCGGGGACCGG-CCG-TCCCCCCCTGCGTGCTGTCGAT
* * * *
32175238 CCTGCTGTCACAATCCTCGGTCCTGTTTGA
128 CCTGCTGCCACAATCCTCAGTCCTGCTGGA
* * * * ** * *
32175268 TCATAGATTGGGAATGAACTCCGTATGCCTACGTTAACCCACGAAATGAGCGTTCGGGCGCTAAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTCCGGGCGCTCAG
* * * * * * * * ** *
32175333 CCGACCGTAGCGGCATAATGCGTAAGCCGGGGATCGGCCCGGTCCCTCTCTGCGTGTTACCGGTC
66 CCGACCGAAGAGGCAAAATGCGTAAGTCGGGGACCGG-CC-GTCCCCCCCTGCGTGCTGTCGATC
*
32175398 CTGCTGCCACAA-CCTTCAGTCC-GACTGGG
129 CTGCTGCCACAATCC-TCAGTCCTG-CTGGA
* * *
32175427 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCCTCCGAGCGCTCA
1 GCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTCCGGGCGCTCA
* * *
32175491 GCCGATCGAAGAGGCAAAATGCGTCAGTCGGGGACCGGCCTTGTCCCCCCCTGTGTGCTGTCGAT
65 GCCGACCGAAGAGGCAAAATGCGTAAGTCGGGGACCGGCC--GTCCCCCCCTGCGTGCTGTCGAT
*
32175556 CTTGCTGC
128 CCTGCTGC
32175564 TGGTCCTACT
Statistics
Matches: 232, Mismatches: 57, Indels: 13
0.77 0.19 0.04
Matches are distributed among these distances:
158 90 0.39
159 141 0.61
160 1 0.00
ACGTcount: A:0.21, C:0.31, G:0.28, T:0.20
Consensus pattern (157 bp):
GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTCCGGGCGCTCAG
CCGACCGAAGAGGCAAAATGCGTAAGTCGGGGACCGGCCGTCCCCCCCTGCGTGCTGTCGATCCT
GCTGCCACAATCCTCAGTCCTGCTGGA
Found at i:32175628 original size:26 final size:26
Alignment explanation
Indices: 32175599--32175650 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
32175589 CCGGTCCAAT
**
32175599 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACAAGGAATGAACTCCATATG
*
32175625 CTTAGACAAGGAATGAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCATATG
32175651 TCGAAGCCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.33, C:0.19, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACAAGGAATGAACTCCATATG
Found at i:32176128 original size:26 final size:26
Alignment explanation
Indices: 32176099--32176152 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
32176089 TCCGATCCGA
*
32176099 GCTTAGACTGTGAATGAACTCCGTAT
1 GCTTAGACTGGGAATGAACTCCGTAT
*
32176125 GCTTAGACTGGGGATGAACTCCGTAT
1 GCTTAGACTGGGAATGAACTCCGTAT
32176151 GC
1 GC
32176153 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (26 bp):
GCTTAGACTGGGAATGAACTCCGTAT
Found at i:32176567 original size:158 final size:159
Alignment explanation
Indices: 32176309--32176671 Score: 392
Period size: 158 Copynumber: 2.3 Consensus size: 159
32176299 AACTCCGTAT
** *
32176309 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGTGTGCAGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGTGTGCAGGCACTAAG
* * * * * *
32176374 CCTACCAGAGAGGTAGAATACACAAGCCAAAGATCGACTCGGTCCCTCT-TACGTGCTGTCGATC
66 CCGACCAGAGAGGCAGAATACACAAGCCAAAGATCGACCCAGTCCCCCTCTACATGCTGTCGATC
** * **
32176438 TTGCTGTCACAACTTTCGGTCCGATTCGA
131 CCGCTGCCACAACCCTCGGTCCGATTCGA
* * * * * *
32176467 TCTTAGAC-TGGGAATGAATTCCGTATGCCTAAGTCAACCCATGAAATGAGCT-TTCGGGCACTA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAG-TGTGCAGGCACTA
* * * * *** *
32176530 AGCCGACCGGCGAGGCATAATGCACAAGCCGGGGATCGACCCAGTCCCCCTCTGCATGCTGTCGA
64 AGCCGACCAGAGAGGCAGAATACACAAGCCAAAGATCGACCCAGTCCCCCTCTACATGCTGTCGA
* * *
32176595 TCCCGCTGCCACAACCCTCGGTTCGATTGGG
129 TCCCGCTGCCACAACCCTCGGTCCGATTCGA
32176626 GCTTAGACATGGAATGAACTCTC-TATGCCTAAGCCAACCCACGAAA
1 GCTTAGACATGGAATGAACTC-CGTATGCCTAAGCCAACCCACGAAA
32176672 CGGGCATGCG
Statistics
Matches: 165, Mismatches: 35, Indels: 9
0.79 0.17 0.04
Matches are distributed among these distances:
157 1 0.01
158 89 0.54
159 73 0.44
160 2 0.01
ACGTcount: A:0.26, C:0.29, G:0.24, T:0.21
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGTGTGCAGGCACTAAG
CCGACCAGAGAGGCAGAATACACAAGCCAAAGATCGACCCAGTCCCCCTCTACATGCTGTCGATC
CCGCTGCCACAACCCTCGGTCCGATTCGA
Found at i:32176717 original size:159 final size:158
Alignment explanation
Indices: 32176309--32176726 Score: 394
Period size: 159 Copynumber: 2.6 Consensus size: 158
32176299 AACTCCGTAT
** * **
32176309 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGTGTGCAGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATGCGGGCACTCAG
* * * ** * * * *
32176374 CC-TACCAGAGAGGTAGAATACACAAGCCAAAGATCGACTCGGTCCCTCTTACGTGCTGTCGATC
66 CCGTACGA-AGAGGCAAAATACACAAGCCGGAGATCGACCCAGTCCCCCTTACATGCTGTCGATC
** * **
32176438 TTGCTGTCACAACTTTCGGTCCGATTCGA
130 CCGCTGCCACAACCCTCGGTCCGATTCGA
* * * * * * *
32176467 TCTTAGAC-TGGGAATGAATTCCGTATGCCTAAGTCAACCCATGAAATGAGCTTTCGGGCACTAA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATGCGGGCACTCA
** * * * *
32176531 GCCG-ACCGGCGAGGCATAATGCACAAGCCGGGGATCGACCCAGTCCCCCTCTGCATGCTGTCGA
65 GCCGTA-CGAAGAGGCAAAATACACAAGCCGGAGATCGACCCAGTCCCCCT-TACATGCTGTCGA
* * *
32176595 TCCCGCTGCCACAACCCTCGGTTCGATTGGG
128 TCCCGCTGCCACAACCCTCGGTCCGATTCGA
* *
32176626 GCTTAGACATGGAATGAACTCTC-TATGCCTAAGCCAACCCACGAAACGGGCATGCGGGCACTCA
1 GCTTAGACATGGAATGAACTC-CGTATGCCTAAGCCAACCCACGAAATGAGCATGCGGGCACTCA
* ** *
32176690 GCCGTTCGAAGAGGCAAAATATGCAAGCAGGAGATCG
65 GCCGTACGAAGAGGCAAAATACACAAGCCGGAGATCG
32176727 GCCCGATCCC
Statistics
Matches: 202, Mismatches: 51, Indels: 13
0.76 0.19 0.05
Matches are distributed among these distances:
157 1 0.00
158 86 0.43
159 113 0.56
160 2 0.01
ACGTcount: A:0.26, C:0.28, G:0.25, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATGCGGGCACTCAG
CCGTACGAAGAGGCAAAATACACAAGCCGGAGATCGACCCAGTCCCCCTTACATGCTGTCGATCC
CGCTGCCACAACCCTCGGTCCGATTCGA
Found at i:32176812 original size:26 final size:26
Alignment explanation
Indices: 32176783--32176835 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
32176773 CCGGTCCGAT
32176783 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
32176809 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
32176835 C
1 C
32176836 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:32177193 original size:26 final size:26
Alignment explanation
Indices: 32177164--32177216 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
32177154 CTGATCCAAT
32177164 CTTAGAC-TGGGAATGAACTCCATATG
1 CTTAGACAT-GGAATGAACTCCATATG
32177190 CTTAGACATGGAATGAACTCCATATG
1 CTTAGACATGGAATGAACTCCATATG
32177216 C
1 C
32177217 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:32177640 original size:12 final size:12
Alignment explanation
Indices: 32177623--32177656 Score: 59
Period size: 12 Copynumber: 2.8 Consensus size: 12
32177613 GTCCCCCCTA
32177623 CGTGCTGCCGAT
1 CGTGCTGCCGAT
*
32177635 CGTGCTACCGAT
1 CGTGCTGCCGAT
32177647 CGTGCTGCCG
1 CGTGCTGCCG
32177657 TAACCCTCGG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.09, C:0.35, G:0.32, T:0.24
Consensus pattern (12 bp):
CGTGCTGCCGAT
Found at i:32179691 original size:26 final size:27
Alignment explanation
Indices: 32179662--32179712 Score: 77
Period size: 26 Copynumber: 1.9 Consensus size: 27
32179652 TTAGACTGGA
* *
32179662 AATGAACTCTGTATG-CTTAGACAAGG
1 AATGAACTCCGTATGCCTAAGACAAGG
32179688 AATGAACTCCGTATGCCTAAGACAA
1 AATGAACTCCGTATGCCTAAGACAA
32179713 CCTACGAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 14 0.64
27 8 0.36
ACGTcount: A:0.37, C:0.20, G:0.20, T:0.24
Consensus pattern (27 bp):
AATGAACTCCGTATGCCTAAGACAAGG
Found at i:32180023 original size:26 final size:26
Alignment explanation
Indices: 32179994--32180046 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
32179984 CCGGTTCAAT
*
32179994 CTTAGACTG-GGAATGAACTCCGTATG
1 CTTAGACTGAGG-ATAAACTCCGTATG
*
32180020 CTTAGACTGAGGATAAACTTCGTATG
1 CTTAGACTGAGGATAAACTCCGTATG
32180046 C
1 C
32180047 CCCCTGTGTG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGGATAAACTCCGTATG
Found at i:32180449 original size:26 final size:26
Alignment explanation
Indices: 32180413--32180465 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
32180403 CCTGTCCGAT
*
32180413 CTTAGATTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
*
32180439 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
32180465 C
1 C
32180466 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:32180466 original size:419 final size:419
Alignment explanation
Indices: 32179677--32180466 Score: 1001
Period size: 419 Copynumber: 1.9 Consensus size: 419
32179667 ACTCTGTATG
* *
32179677 CTTAGACAAGGAATGAACTCCGTATGCCTAAGACAACCTACGAAATGAACGTGCGGGTGCTCAGC
1 CTTAGACAAGGAATGAACTCCGTATGCCTAAGACAACCCACGAAATGAACGTGCGGGCGCTCAGC
* * **
32179742 CGATCGAAGAGGTAGAATACGCAAGCTGGGGATCGGCCTGGTCCCCCTCTGCGTGCTATCCGTCC
66 CGATCGAAGAGGCAGAATACGCAAGCTGGGGATCGACCCAGTCCCCCTCTGCGTGCTATCCGTCC
* * * * *
32179807 CGCTGCCACTACCCTCGGTCCGGTTGAGGTTTATACATGGAATGAACTCCCTATGCCTAAGCCAA
131 CGCTGCCACAACCCTCGGTCCGGCTGAGGCTCAAACATGGAATGAACTCCCTATGCCTAAGCCAA
** * ** * * ** ** *
32179872 CCCATGAAACGGGTGTACGGGCACTCAACCGATCAGAGAGGTAGAATGTGCAAGCTGGGGATCGG
196 CCCACAAAACAGGCATACGGGCACTCAACCGACCAGAGAGGCAGAATACGCAAGCCAGGGATCAG
** * * * * * *
32179937 CCCGATCCCCCCTGTGTGTTGCCGATCCTGCTGTCGCAACCGTCGATCCGGTTCAATCTTAGACT
261 CCCGATCCCCCCTGCATGCTACCAATCCTACTGTCGCAACCCTCGATCCGGTCCAATCTTAGACT
32180002 GGGAATGAACTCCGTATGCTTAGACTGAGGATAAACTTCGTATGCCCCCTGTGTGCTGTCGATCC
326 GGGAATGAACTCCGTATGCTTAGACTGAGGATAAACTTCGTATGCCCCCTGTGTGCTGTCGATCC
32180067 TACTGCCGTAACCCTCAATCTGGTCTGAT
391 TACTGCCGTAACCCTCAATCTGGTCTGAT
** * * * * *
32180096 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAATGAGCGTTCGGGCGCTGAGC
1 CTTAGACAAGGAATGAACTCCGTATGCCTAAGACAACCCACGAAATGAACGTGCGGGCGCTCAGC
* * * *
32180161 CGATCGGAGAGGCATAATGCGCAAGCTGGGGATCGACCCAGTCCCCCTCTGCGTGCTATCGGTCC
66 CGATCGAAGAGGCAGAATACGCAAGCTGGGGATCGACCCAGTCCCCCTCTGCGTGCTATCCGTCC
* *
32180226 CGCTGCCACAACCCTCGGTCTGGCTGGGGCTCAAACATGGAATGAACTCCCTATGCCTAAGCCAA
131 CGCTGCCACAACCCTCGGTCCGGCTGAGGCTCAAACATGGAATGAACTCCCTATGCCTAAGCCAA
* * ** * * *
32180291 CCCACAAAATAGGCATGCGGGTGCTCAGCCTACCGGAGAGGCAGAATACGCAAGCCAGGGATCAG
196 CCCACAAAACAGGCATACGGGCACTCAACCGACCAGAGAGGCAGAATACGCAAGCCAGGGATCAG
* * * *
32180356 CCCGATCCCGCCTGCATGCTACCAATCCTACTG-CTGGAACCCTC-AGTCCTGTCCGATCTTAGA
261 CCCGATCCCCCCTGCATGCTACCAATCCTACTGTC-GCAACCCTCGA-TCCGGTCCAATCTTAGA
* * * *
32180419 TTGGGAATGAACTTCGTATGCTTAGACTGGGGATGAAC-TCTGTATGCC
324 CTGGGAATGAACTCCGTATGCTTAGACTGAGGATAAACTTC-GTATGCC
32180467 TAAGTCAACC
Statistics
Matches: 309, Mismatches: 59, Indels: 6
0.83 0.16 0.02
Matches are distributed among these distances:
418 4 0.01
419 305 0.99
ACGTcount: A:0.23, C:0.29, G:0.26, T:0.22
Consensus pattern (419 bp):
CTTAGACAAGGAATGAACTCCGTATGCCTAAGACAACCCACGAAATGAACGTGCGGGCGCTCAGC
CGATCGAAGAGGCAGAATACGCAAGCTGGGGATCGACCCAGTCCCCCTCTGCGTGCTATCCGTCC
CGCTGCCACAACCCTCGGTCCGGCTGAGGCTCAAACATGGAATGAACTCCCTATGCCTAAGCCAA
CCCACAAAACAGGCATACGGGCACTCAACCGACCAGAGAGGCAGAATACGCAAGCCAGGGATCAG
CCCGATCCCCCCTGCATGCTACCAATCCTACTGTCGCAACCCTCGATCCGGTCCAATCTTAGACT
GGGAATGAACTCCGTATGCTTAGACTGAGGATAAACTTCGTATGCCCCCTGTGTGCTGTCGATCC
TACTGCCGTAACCCTCAATCTGGTCTGAT
Found at i:32180920 original size:21 final size:21
Alignment explanation
Indices: 32180875--32180921 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
32180865 GATTTGTCTG
*
32180875 GTCCCCCTCTGCATGCTGTCG
1 GTCCCCCTCTGCATGCTGTCA
** *
32180896 GTCCCCCTCTGTGTGCTGTTA
1 GTCCCCCTCTGCATGCTGTCA
32180917 GTCCC
1 GTCCC
32180922 ACTGCCACAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.04, C:0.40, G:0.23, T:0.32
Consensus pattern (21 bp):
GTCCCCCTCTGCATGCTGTCA
Found at i:32181161 original size:182 final size:183
Alignment explanation
Indices: 32180949--32181309 Score: 449
Period size: 182 Copynumber: 2.0 Consensus size: 183
32180939 TTCGGCTGGG
*** *
32180949 GCTTAGACATGGAATGAACTTCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTTCCTATGCCTAAGCCAACCCATGAAACAAGCGTACGGGCGCTCAG
* * * * * *
32181014 -TCGGCCAGAGAGGCAGAATGCACAAGCTGGGTATCAGCCCGGTCCCCCCT-CGTGCTGTCGATC
66 CT-AGCCAGAGACGCAAAATGCACAAGCTGGGGACCAGCCCGATCCCCCCTGCGTGCTGTCGATC
* * *
32181077 CTGCTACCGTAACCCTCGATCTAATTCGATCTTAGACTG-GAATGAACTCCATAT
130 CTGCTACCGCAACCCTCGATCCAATCCGATCTTAGAC-GAGAATGAACTCCATAT
** *
32181131 GCTTAGACATGGAATGAACTTTGTATGCCTAAGCCAACCCATGAAACAAGCGTACGGGCGCTTAG
1 GCTTAGACATGGAATGAACTTCCTATGCCTAAGCCAACCCATGAAACAAGCGTACGGGCGCTCAG
** * * * *
32181196 CTAGCTGGAGACGCAAAATGCGCAAGCTGGGGACCAGCCCGATCCCCCCTGTGTGTTGTCGATCT
66 CTAGCCAGAGACGCAAAATGCACAAGCTGGGGACCAGCCCGATCCCCCCTGCGTGCTGTCGATCC
* * **
32181261 TGCTGCTGCAACCCTCGATCCGGTCCGATCTTAGACGAGAATGAACTCC
131 TGCTACCGCAACCCTCGATCCAATCCGATCTTAGACGAGAATGAACTCC
32181310 GTACGCCTAA
Statistics
Matches: 150, Mismatches: 26, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
182 98 0.65
183 52 0.35
ACGTcount: A:0.24, C:0.29, G:0.25, T:0.22
Consensus pattern (183 bp):
GCTTAGACATGGAATGAACTTCCTATGCCTAAGCCAACCCATGAAACAAGCGTACGGGCGCTCAG
CTAGCCAGAGACGCAAAATGCACAAGCTGGGGACCAGCCCGATCCCCCCTGCGTGCTGTCGATCC
TGCTACCGCAACCCTCGATCCAATCCGATCTTAGACGAGAATGAACTCCATAT
Found at i:32181659 original size:26 final size:26
Alignment explanation
Indices: 32181604--32181659 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 26
32181594 CTGATTTGAT
*
32181604 CTTAGACTGGGAATGAACTCCATCTA
1 CTTAGACTGGGAATGAACTCCATATA
* * *
32181630 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATA
32181656 CTTA
1 CTTA
32181660 AATCAACCCA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATA
Found at i:32182686 original size:26 final size:26
Alignment explanation
Indices: 32182646--32182697 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
32182636 TACTTCGATA
*
32182646 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCATATGC
*
32182672 TTAGACTGGGGATGAACTCCATATGC
1 TTAGACTGGGAATGAACTCCATATGC
32182698 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGC
Found at i:32182870 original size:26 final size:26
Alignment explanation
Indices: 32182841--32182893 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32182831 CCGGTCTGAT
*
32182841 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
32182867 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
32182893 C
1 C
32182894 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:32183163 original size:159 final size:158
Alignment explanation
Indices: 32182867--32183369 Score: 548
Period size: 159 Copynumber: 3.2 Consensus size: 158
32182857 ACTCTGTATG
* * *
32182867 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTTCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGAGTTCGGGCGCTCAGC
* * * * * *
32182932 CGACCGGAGAGGCAGAATGCACAAGCCGAGGA-CTGGCCCAGTCCCCCCCTGCGTGCTGTCGATC
66 CGATCGGAGAGGCAGAATGCGCAAGCCGGGGATC-AGCCCGGTCCCCCCTTGCGTGCTGTCGATC
** *
32182996 CTGTTGCCACAACCCTTGGTCCAGTCTGAT
130 CTACTGCCACAACCCTCGGTCC-GTCTGAT
* * * *
32183026 CTTAGAC-TGAGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACAAGAGTTCGGGCACTGAG
1 CTTAGACATG-GAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGAGTTCGGGCGCTCAG
* * * ** * *
32183090 CCGATCGGAGAGGCATAATGCGTAAGCCGGGGATCCGTTCGGTCCCCCTTTGCGTGCTGTCGGTC
65 CCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCCTTGCGTGCTGTCGATC
* * **
32183155 CCACTGCCACAACCCTCGGTCCGGCTGGGG
130 CTACTGCCACAACCCTCGGTCCGTCT-GAT
* * * ** * * *
32183185 CTTAGACATGGAATGAATTCCCTATACCTAAGCCAACCCATGAAA-TGGGGATGCGGGCGCTCAA
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGAG-TTCGGGCGCTCAG
* * * **
32183249 CCGATCGAAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGGT-CCCCGTTGCATGCTACCGATC
65 CCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCCTTGCGTGCTGTCGATC
32183313 CTACTGCCACAACCCTCGGTCCGATCTGAT
130 CTACTGCCACAACCCTCGGTCCG-TCTGAT
32183343 CTTAGAC-TAGGAATGAACTCCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
32183370 TTAGACTGGA
Statistics
Matches: 281, Mismatches: 56, Indels: 15
0.80 0.16 0.04
Matches are distributed among these distances:
157 1 0.00
158 68 0.24
159 209 0.74
160 3 0.01
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGAGTTCGGGCGCTCAGC
CGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCCTTGCGTGCTGTCGATCC
TACTGCCACAACCCTCGGTCCGTCTGAT
Found at i:32183372 original size:26 final size:26
Alignment explanation
Indices: 32183343--32183395 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32183333 CCGATCTGAT
*
32183343 CTTAGACTAGGA-ATGAACTCCGTATG
1 CTTAGACT-GGAGATGAACTCCATATG
32183369 CTTAGACTGGAGATGAACTCCATATG
1 CTTAGACTGGAGATGAACTCCATATG
32183395 C
1 C
32183396 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 3 0.12
26 22 0.88
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAGATGAACTCCATATG
Found at i:32184417 original size:26 final size:26
Alignment explanation
Indices: 32184381--32184433 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
32184371 CTGGTTTGAT
32184381 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
32184407 CTTAGACTGGGGATGAATTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
32184433 C
1 C
32184434 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:32184712 original size:196 final size:196
Alignment explanation
Indices: 32184364--32184724 Score: 444
Period size: 196 Copynumber: 1.8 Consensus size: 196
32184354 CTGCCACAAC
** * * * *
32184364 CCTCGATCTGGTTTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAATTCCG
1 CCTCGATCTGGTCCGATCTTAGACTGGAAATGAACTCCGTATGCTTAGACTGCGAATGAACTCCG
* * * * * *
32184429 TATGCCTAAGTCAACCTACGAAATGAGCGTGCGGGCGGTCAGAAGGCCGAAGAGGTAGAATACGC
66 TATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGCGCTCAGAAGACCGAAGAGGCAGAATACGC
*
32184494 AAGCCAGGGATCGGTTCGATCCCCCCTGCATGCTACCGATCCAACTGCTGGTCCTACTGCTGCAA
131 AAGCCAGGGATCGGCTCGATCCCCCCTGCATGCTACCGATCCAACTGCTGGTCCTACTGCTGCAA
32184559 G
196 G
*
32184560 CCTCGGTCTGGTCCGATCTTAGACAT-GAAATGAACT-CGTTATGCTTAGACAT-CGAATGAACT
1 CCTCGATCTGGTCCGATCTTAGAC-TGGAAATGAACTCCG-TATGCTTAGAC-TGCGAATGAACT
* * * *
32184622 CCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCAGGCGCTCA-ACCGACCGGAGGGGCAGAAT
63 CCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGCGCTCAGA-AGACCGAAGAGGCAGAAT
** **
32184686 GTGCAAGCTGGGGA-CTGGCTCGATCCCCCCTGCATGCTA
127 ACGCAAGCCAGGGATC-GGCTCGATCCCCCCTGCATGCTA
32184725 TCATTCCTGC
Statistics
Matches: 138, Mismatches: 22, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
195 4 0.03
196 132 0.96
197 2 0.01
ACGTcount: A:0.24, C:0.27, G:0.27, T:0.22
Consensus pattern (196 bp):
CCTCGATCTGGTCCGATCTTAGACTGGAAATGAACTCCGTATGCTTAGACTGCGAATGAACTCCG
TATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGCGCTCAGAAGACCGAAGAGGCAGAATACGC
AAGCCAGGGATCGGCTCGATCCCCCCTGCATGCTACCGATCCAACTGCTGGTCCTACTGCTGCAA
G
Found at i:32184966 original size:159 final size:158
Alignment explanation
Indices: 32184603--32185104 Score: 496
Period size: 158 Copynumber: 3.2 Consensus size: 158
32184593 ACTCGTTATG
* * ** * * *
32184603 CTTAGACATCGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCAGGCGCTCAAC
1 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACAAGCGTTCGGGCGCTCAGC
* * *
32184668 CGACCGGAG-GGGCAGAATGTGCAAGCTGGGGA-CTGGCTCGATCCCCCCTGCATGCTATC-ATT
66 CGACCGGAGAGGG-AGAATGCGCAAGCCGGGGATC-GGCTCGGTCCCCCCTGCATGCTATCGA-T
* * * * *
32184730 CCTGCTGTCGCAACCCTCGGTCTGGTGTGAT
128 CCTGCTGCCACAACCCTCGGTCCGCTGGGAT
* ** *
32184761 CTTAGAC-TGGGAATGAGCTCCATATGCCTAAGTTAACCCATGAAACAAGCGTTCGGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCATGAAACAAGCGTTCGGGCGCTCAG
* * * * *
32184825 CCGACTGGAGAGGGATAATGGGCAAGCCGGGGATCGGCTCGGTCCCCCTCTGCGTGCTATCGGTC
65 CCGACCGGAGAGGGAGAATGCGCAAGCCGGGGATCGGCTCGGTCCCCC-CTGCATGCTATCGATC
* *
32184890 CTACTGCCACAACCCTCGGTCCGACTGGGGT
129 CTGCTGCCACAACCCTCGGTCCG-CTGGGAT
* * ** * *
32184921 -TTAGACATGGAATGAACACCTTATGCCTAAGCCAACCCACAAAACAGGCGTAT-GGGTGCTCAG
1 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACAAGCGT-TCGGGCGCTCAG
* * * * *
32184984 CCGGCCGGAGAGGTAGAATGCACAAGCCGAGGATCGGCTCGGTCCCCCCTGCATGCTGTCGATCC
65 CCGACCGGAGAGGGAGAATGCGCAAGCCGGGGATCGGCTCGGTCCCCCCTGCATGCTATCGATCC
* * * **
32185049 TGCTACCACAACCCTTGGTCCGGTTCGAT
130 TGCTGCCACAACCCTCGGTCCGCTGGGAT
*
32185078 CTTAGAC-TGGGAATGAACTCCGTATGC
1 CTTAGACAT-GGAATGAACTCCATATGC
32185105 TTAGACTAGG
Statistics
Matches: 280, Mismatches: 54, Indels: 20
0.79 0.15 0.06
Matches are distributed among these distances:
157 5 0.02
158 143 0.51
159 126 0.45
160 6 0.02
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACAAGCGTTCGGGCGCTCAGC
CGACCGGAGAGGGAGAATGCGCAAGCCGGGGATCGGCTCGGTCCCCCCTGCATGCTATCGATCCT
GCTGCCACAACCCTCGGTCCGCTGGGAT
Found at i:32185107 original size:26 final size:26
Alignment explanation
Indices: 32185078--32185130 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32185068 CCGGTTCGAT
*
32185078 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATAAACTCCGTATG
32185104 CTTAGACTAGGGATAAACTCCGTATG
1 CTTAGACTAGGGATAAACTCCGTATG
32185130 C
1 C
32185131 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGGATAAACTCCGTATG
Found at i:32185603 original size:26 final size:25
Alignment explanation
Indices: 32185564--32185614 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 25
32185554 CGCTCAAAAT
32185564 CTTAGACTGGAATGAACTCCGTATG
1 CTTAGACTGGAATGAACTCCGTATG
32185589 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGAC-TGGAATGAACTCCGTATG
32185615 GCTAAGCCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTCCGTATG
Found at i:32186526 original size:159 final size:159
Alignment explanation
Indices: 32186110--32186519 Score: 443
Period size: 159 Copynumber: 2.6 Consensus size: 159
32186100 CTTAAACATG
* * * *
32186110 GAATGAACTACATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAACC-GATCGAAG
1 GAATGAACTTCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCT-GAAG
* * * * *
32186174 AGGCAGAATGTGCAAGCCGAGGATCGGCCCGGTCCCCCTCTGCATGCTGTCGAACCTGCTGTCAC
65 AGGCAGAATGCGCAAGTCGAGGATCGGCCCGATCCCCCTCTGCATGCTGTCGAACCTGCGGCCAC
* *
32186239 AACCCTCGGTCCAGTCTGATGTTAGACTGA
130 AACCCTCGGTCCAGGCTGAGGTTAGACTGA
* * * * * **
32186269 GAATTAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAGCCGGCCAAAGA
1 GAATGAACTTCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCTGAAGA
* * * * *
32186334 GGCATAATGCGCATGTCGAGGATCGACCCGATCCCCCTCTGCGTGCTGTCTG--TCTCGCGGCCA
66 GGCAGAATGCGCAAGTCGAGGATCGGCCCGATCCCCCTCTGCATGCTGTC-GAACCT-GCGGCCA
* * *
32186397 CAACCCTCGGT-CTGGCTGGGGCTTAGACATTA
129 CAACCCTCGGTCCAGGCTGAGG-TTAGAC-TGA
* * * * *
32186429 -AATGAACTTCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCGGGTGCTCAGCCGGCTGGATA
1 GAATGAACTTCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCTGAAGA
* *
32186493 GGCAGAATGCGTAAGTCGGGGATCGGC
66 GGCAGAATGCGCAAGTCGAGGATCGGC
32186520 TTGATCCTTC
Statistics
Matches: 204, Mismatches: 42, Indels: 10
0.80 0.16 0.04
Matches are distributed among these distances:
158 8 0.04
159 192 0.94
160 4 0.02
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.19
Consensus pattern (159 bp):
GAATGAACTTCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCTGAAGA
GGCAGAATGCGCAAGTCGAGGATCGGCCCGATCCCCCTCTGCATGCTGTCGAACCTGCGGCCACA
ACCCTCGGTCCAGGCTGAGGTTAGACTGA
Found at i:32186659 original size:26 final size:26
Alignment explanation
Indices: 32186623--32186675 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
32186613 CTGGTCCGAT
32186623 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
32186649 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
32186675 C
1 C
32186676 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:32187665 original size:159 final size:158
Alignment explanation
Indices: 32187370--32187781 Score: 417
Period size: 159 Copynumber: 2.6 Consensus size: 158
32187360 AACTCTGTAT
* *
32187370 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCTAACCCACGAAACGAGCGTGCGGGCGCTTAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGC-AACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * *
32187435 CAGG-CTAGAGAGGCAGAATGCGCAAGCCAAGGATTGACCCGGTCCACCCCTACGTGCTGTCGAT
65 CCGGTC-AGAGAGGCAGAATGCGCAAGCCAAGGAATCACCCGATCCACCCCTACGTGCTGTCGAT
* ** ** *
32187499 CCTACTGCTGCAACCCTCGGTCC-GATCCAA
129 CCCACTGCCACAACCCTCAATCCGGCT-CAA
* * * *
32187529 TCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCAGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAG-CAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * *
32187593 GCCGGTC-GAAGAGGCATAATGTGCAAGCC-CGGAATCAGCTCGATCTC-CCTCTGCGTGCTG-C
64 GCCGGTCAG-AGAGGCAGAATGCGCAAGCCAAGGAATCA-CCCGATC-CACCCCTACGTGCTGTC
***
32187654 AAGA-CCCACTGCCACAACCCTCAATCCGGCTGGG
126 --GATCCCACTGCCACAACCCTCAATCCGGCTCAA
* * *
32187688 GCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGTTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAG-CAACCCACGAAACGAGCGTGCGGGCGCTCAG
32187753 CCGGTCAGAGAGGCAGAATGCGCAAGCCA
65 CCGGTCAGAGAGGCAGAATGCGCAAGCCA
32187782 GGGATCGGCC
Statistics
Matches: 207, Mismatches: 34, Indels: 23
0.78 0.13 0.09
Matches are distributed among these distances:
158 8 0.04
159 190 0.92
160 9 0.04
ACGTcount: A:0.26, C:0.30, G:0.27, T:0.17
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGTCAGAGAGGCAGAATGCGCAAGCCAAGGAATCACCCGATCCACCCCTACGTGCTGTCGATCC
CACTGCCACAACCCTCAATCCGGCTCAA
Found at i:32187888 original size:26 final size:26
Alignment explanation
Indices: 32187847--32187902 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
32187837 CCGGTCCGAT
*
32187847 CTTAGACTGAGAATGAACTCTGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
* *
32187873 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
32187899 CTTA
1 CTTA
32187903 AGTCAACCCA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:32188156 original size:343 final size:343
Alignment explanation
Indices: 32187530--32188313 Score: 893
Period size: 343 Copynumber: 2.3 Consensus size: 343
32187520 CCGATCCAAT
*
32187530 CTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCAGGCGCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGC
* * * * * * *
32187595 CGGTCGAAGAGGCATAATGTGCAAGCCCGGAATCAGCTCGATCTCCCTCTGCGTGCTGCAAGACC
66 CGGCCGGAGAGGCATAATGTGCAAGCCGGGGATCAGCTCGATCCCCCTCTACGTGCTCCAAGACC
* * *
32187660 CACTGCCACAACCCTCAATCCGGCTGGGGCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAA
131 CACTGCCACAACCCTCAATCCGGCTGGGGCCTAGAAATGGAATGAACTCCTTATGCCTAACCCAA
* * * *** *
32187725 CCCACGAAACGGGCGTGCGGGCGTTCAGCCGGTCAGAGAGGCAGAATGCGCAAGCCAGGGATCGG
196 CCCACGAAACGAGCATGCGGGCGCTCAGCCAACCAGAGAGGCAGAATACGCAAGCCAGGGATCGG
** * * ** * *
32187790 CCTGGTCCCCCCTGCATGCTATCGATCTTGCTGCTGCA-ACCCTCTGTCCGGTCCGATCTT-AGA
261 CCTAATCCCCCCTACATGCTATCGATCCTGCTGCCACAGACCCTCGGTCC-ATCCGATCTTCA-A
*
32187853 CT-GAGAATGAACTCTGTATG
324 CTAG-GAATGAACTCCGTATG
* * * * *
32187873 CTTAGACTGGGGATGAACTCCGTATGCTTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGC
* * * *
32187938 CGGCCGGAGAGGCATAATGCGCAAGCCGGGGATTAGC-CTGGTCCCCCTCTACGTGCTACCAA-T
66 CGGCCGGAGAGGCATAATGTGCAAGCCGGGGATCAGCTC-GATCCCCCTCTACGTGCT-CCAAGA
** * *
32188001 CCTGCTGCCACAACCCTCGATCCGGTTGGGGCCTAGAAATGGAATGAACT-CTGTATGCCTAACC
129 CCCACTGCCACAACCCTCAATCCGGCTGGGGCCTAGAAATGGAATGAACTCCT-TATGCCTAACC
* * * * * *
32188065 CAACCCACGAAACGAGCATGCGGGTGCTCAGTCAACCGGAGAGGCAGAATATGCTAGCCGGGGAT
193 CAACCCACGAAACGAGCATGCGGGCGCTCAGCCAACCAGAGAGGCAGAATACGCAAGCCAGGGAT
* * *
32188130 CGGTCC-AATCCCCCCTACGTGCTATCGATCCTGCTGCCACAGCCCCTCGGTCCATCTGATCTTC
258 CGG-CCTAATCCCCCCTACATGCTATCGATCCTGCTGCCACAGACCCTCGGTCCATCCGATCTTC
32188194 AACTAGGAATGAACTCCGTATG
322 AACTAGGAATGAACTCCGTATG
* * * * * * *
32188216 CTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACGCATGAAATGAGCATGCAGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAG
** * *
32188280 CCGGCTAGAGAGGCA-AATGTGTAAGCCGAGGATC
65 CCGGCCGGAGAGGCATAATGTGCAAGCCGGGGATC
32188314 GACCCGGTCC
Statistics
Matches: 367, Mismatches: 66, Indels: 17
0.82 0.15 0.04
Matches are distributed among these distances:
342 18 0.05
343 332 0.90
344 17 0.05
ACGTcount: A:0.25, C:0.30, G:0.27, T:0.19
Consensus pattern (343 bp):
CTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGC
CGGCCGGAGAGGCATAATGTGCAAGCCGGGGATCAGCTCGATCCCCCTCTACGTGCTCCAAGACC
CACTGCCACAACCCTCAATCCGGCTGGGGCCTAGAAATGGAATGAACTCCTTATGCCTAACCCAA
CCCACGAAACGAGCATGCGGGCGCTCAGCCAACCAGAGAGGCAGAATACGCAAGCCAGGGATCGG
CCTAATCCCCCCTACATGCTATCGATCCTGCTGCCACAGACCCTCGGTCCATCCGATCTTCAACT
AGGAATGAACTCCGTATG
Found at i:32188178 original size:159 final size:159
Alignment explanation
Indices: 32187885--32188170 Score: 378
Period size: 159 Copynumber: 1.8 Consensus size: 159
32187875 TAGACTGGGG
* ** * **
32187885 ATGAACTCCGTATGCTTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGTCGGCCGGAGAGG
1 ATGAACTCCGTATGCCTAACCCAACCCACGAAACAAGCATGCGGGCGCTCAGTCAACCGGAGAGG
* * * **
32187950 CATAATGCGCAAGCCGGGGATTAGCCTGGTCCCCCTCTACGTGCTACCAATCCTGCTGCCACAAC
66 CAGAATACGCAAGCCGGGGATCAGCCTAATCCCCCTCTACGTGCTACCAATCCTGCTGCCACAAC
32188015 CCTCGATCCGGTTGGGGCCTAGAAATGGA
131 CCTCGATCCGGTTGGGGCCTAGAAATGGA
* * *
32188044 ATGAACTCTGTATGCCTAACCCAACCCACGAAACGAGCATGCGGGTGCTCAGTCAACCGGAGAGG
1 ATGAACTCCGTATGCCTAACCCAACCCACGAAACAAGCATGCGGGCGCTCAGTCAACCGGAGAGG
* * * * *
32188109 CAGAATATGCTAGCCGGGGATCGGTCC-AATCCCCC-CTACGTGCTATCGATCCTGCTGCCACA
66 CAGAATACGCAAGCCGGGGATCAG-CCTAATCCCCCTCTACGTGCTACCAATCCTGCTGCCACA
32188171 GCCCCTCGGT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
158 25 0.23
159 80 0.75
160 2 0.02
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.18
Consensus pattern (159 bp):
ATGAACTCCGTATGCCTAACCCAACCCACGAAACAAGCATGCGGGCGCTCAGTCAACCGGAGAGG
CAGAATACGCAAGCCGGGGATCAGCCTAATCCCCCTCTACGTGCTACCAATCCTGCTGCCACAAC
CCTCGATCCGGTTGGGGCCTAGAAATGGA
Found at i:32188724 original size:26 final size:26
Alignment explanation
Indices: 32188688--32188740 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
32188678 CCGGTCTGAT
*
32188688 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
*
32188714 CTTAGAATGGGGATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
32188740 C
1 C
32188741 CTAAGTCCAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Found at i:32189325 original size:183 final size:182
Alignment explanation
Indices: 32188998--32189346 Score: 425
Period size: 183 Copynumber: 1.9 Consensus size: 182
32188988 CTGTCGATCC
* * * * * * *
32188998 TGCTGTTGGTCCTACTACCGTATCCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTA
1 TGCTGTCGATCCTACTACCGTAACCCTCGATCTGGTCTGATCCTACACTGAGAATGAACTCCGTA
* * * * * *
32189063 TGCTTAGACATGAATGAACTTCGTATGCCTAAGCCAACCCAGTAAATGAGCATGCAGGTGCTCAG
66 TACTTAGACAAGAATGAACTCCGTATGCCTAAGCCAACCAAGTAAACGAGCATGCAGGCGCTCAG
* * *
32189128 CCGGCCGAAGAGGCAGAATGCGCAAGCTAGGGATTGGCTCGGTCCCCCTGTG
131 CCGACCGAAGAGGCAGAATGCACAAGCCAGGGATTGGCTCGGTCCCCCTGTG
* * *
32189180 TGCTGTCGATCCTGCTACCGTAACCCTCGATTTGGTCTGATCCTACACTGAGAATGAACTCTGTA
1 TGCTGTCGATCCTACTACCGTAACCCTCGATCTGGTCTGATCCTACACTGAGAATGAACTCCGTA
* * *
32189245 TACTTAGACTACAG-ATGAACTCCGTATGCCTAAGTCAACCTAAG-AAACGAGCGTGCGGGCGCT
66 TACTTAGAC-A-AGAATGAACTCCGTATGCCTAAGCCAACC-AAGTAAACGAGCATGCAGGCGCT
* *
32189308 CAGCCGACC-AGAGAGGCAGGATGCACAAGCCGGGGATTG
128 CAGCCGACCGA-AGAGGCAGAATGCACAAGCCAGGGATTG
32189347 AACGGGTGGT
Statistics
Matches: 139, Mismatches: 24, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
182 64 0.46
183 72 0.52
184 3 0.02
ACGTcount: A:0.24, C:0.26, G:0.27, T:0.23
Consensus pattern (182 bp):
TGCTGTCGATCCTACTACCGTAACCCTCGATCTGGTCTGATCCTACACTGAGAATGAACTCCGTA
TACTTAGACAAGAATGAACTCCGTATGCCTAAGCCAACCAAGTAAACGAGCATGCAGGCGCTCAG
CCGACCGAAGAGGCAGAATGCACAAGCCAGGGATTGGCTCGGTCCCCCTGTG
Found at i:32190288 original size:159 final size:158
Alignment explanation
Indices: 32190092--32190435 Score: 381
Period size: 159 Copynumber: 2.2 Consensus size: 158
32190082 CTGATCTGAT
* * ** * *
32190092 CTTAGACTGGGAATTAACTCCGTATGCATAAGTCAACCCACGAAAC-GAGCATGCGGGCGCTGAG
1 CTTAGACTGGGAATGAACTCCCTATGCATAAACCAACCCACAAAACAG-GCATGCGGGCGCTCAG
* * * * *
32190156 CCAGCCGGAGAGGCATAATGCACAAGCC-AGGGATCGACCCGGTCCCCCTCTGCGTGCTGTCGGT
65 CCAGCCGGAGAGGCAGAATGCACAAGCCGA-GGATCGACCCGATCCCCC-ATGCGTGCTATCGAT
32190220 -CTCGCTACCACAACCCTCGATTCGATTGGGG
128 CCT-GCTACCACAACCCTCGATTCGATTGGGG
* *
32190251 CTTAGACAT-GGAATGAACTCCCTATGCCTAAACCAACCCACAAAACAGGCGTGCGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCCTATGCATAAACCAACCCACAAAACAGGCATGCGGGCGCTCAG
* * * *
32190315 CCGGCTGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCTGATCCCCCATGCGTGCTATCGATCC
65 CCAGCCGGAGAGGCAGAATGCACAAGCCGAGGATCGACCCGATCCCCCATGCGTGCTATCGATCC
* * * * * * **
32190380 TGCTACCGCAACCCTTGGTCCGGTTCGAT
130 TGCTACCACAACCCTCGATTCGATTGGGG
*
32190409 CTTAGACTGGGAATGAACTCCGTATGC
1 CTTAGACTGGGAATGAACTCCCTATGC
32190436 TTAGACCGGG
Statistics
Matches: 154, Mismatches: 26, Indels: 11
0.81 0.14 0.06
Matches are distributed among these distances:
157 1 0.01
158 56 0.36
159 94 0.61
160 3 0.02
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.19
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCCTATGCATAAACCAACCCACAAAACAGGCATGCGGGCGCTCAGC
CAGCCGGAGAGGCAGAATGCACAAGCCGAGGATCGACCCGATCCCCCATGCGTGCTATCGATCCT
GCTACCACAACCCTCGATTCGATTGGGG
Found at i:32190438 original size:26 final size:26
Alignment explanation
Indices: 32190409--32190461 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
32190399 CCGGTTCGAT
* *
32190409 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACCGGGAATGAACTCCATATG
*
32190435 CTTAGACCGGGGATGAACTCCATATG
1 CTTAGACCGGGAATGAACTCCATATG
32190461 C
1 C
32190462 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACCGGGAATGAACTCCATATG
Found at i:32190734 original size:355 final size:361
Alignment explanation
Indices: 32190246--32190900 Score: 849
Period size: 367 Copynumber: 1.8 Consensus size: 361
32190236 TCGATTCGAT
* *
32190246 TGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAACCAACCCACAAAACAGGCGTGCGGGCGC
1 TGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAACCAACCCACAAAACAAGCGTGCGGGCAC
* * * *
32190311 TCAGCCGGCTGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCTGATCCCCCATGCGTGCTATCG
66 TCAACCGGCTGGAGAGGCAGAATACGCAAGCAGAGGATCGACCCGATCCCCCATGCGTGCTATCG
*** *
32190376 AT-C-C-T-G-CTA-CCGCAACCCTTGGTCCGGT-TCGATCTTAGACTGGGAATGAACTCCGTAT
131 ATCCGCTTGGCCTAGCCGCAACCCTCAATCCGGTCT-GATCTTAGACTGGGAATGAACACCGTAT
* * * * *
32190434 GCTTAGACCGGGGATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTCAA
195 GCTTAGACAGGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAA
* * * * *
32190499 CCGACTGGAGAGGCATAGTGCGTAAGCCGAGGATCAGCCCGATCCCCCTCTACGTGCTACCGATC
260 CCGACCGGAGAGCCAAAATGCGTAAACCGAGGATCAGCCCGATCCCCCTCTACGTGCTACCGATC
32190564 CCGCTGCCAGTCCTGCTGCCACAACCCGTGGTTCGGC
325 CCGCTGCCAGTCCTGCTGCCACAACCCGTGGTTCGGC
* * * * *
32190601 TGGGGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAAGCCACAAAACAAGTGTGCGGGCAC
1 TGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAACCAACCCACAAAACAAGCGTGCGGGCAC
* * * *
32190666 TCAACC-GATCGGAGAGGCAGAATACGCAAGCAGAGGATCGGCCCGATCCCCCTTGCGTGCTGTC
66 TCAACCGGCT-GGAGAGGCAGAATACGCAAGCAGAGGATCGACCCGATCCCCCATGCGTGCTATC
* *
32190730 GATCCTGCTGTTGGTCCTAGGGTCGCAACCCTCAATTCGGTCTGATCTTAGACTGGGAATGAACA
130 GATCC-GC--TTGG-CCTA--GCCGCAACCCTCAATCCGGTCTGATCTTAGACTGGGAATGAACA
* * * *
32190795 CCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCTACAAAACGAGCGTGCGGGT
189 CCGTATGCTTAGACAGGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGC
* *
32190860 GCTCAGCCGACCGGAGAGCCAAAATGCGTAAACTGAGGATC
254 GCTCAACCGACCGGAGAGCCAAAATGCGTAAACCGAGGATC
32190901 GACTCAGTCC
Statistics
Matches: 249, Mismatches: 37, Indels: 16
0.82 0.12 0.05
Matches are distributed among these distances:
354 2 0.01
355 114 0.46
356 1 0.00
358 1 0.00
361 1 0.00
362 1 0.00
364 3 0.01
367 125 0.50
368 1 0.00
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.19
Consensus pattern (361 bp):
TGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAACCAACCCACAAAACAAGCGTGCGGGCAC
TCAACCGGCTGGAGAGGCAGAATACGCAAGCAGAGGATCGACCCGATCCCCCATGCGTGCTATCG
ATCCGCTTGGCCTAGCCGCAACCCTCAATCCGGTCTGATCTTAGACTGGGAATGAACACCGTATG
CTTAGACAGGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAAC
CGACCGGAGAGCCAAAATGCGTAAACCGAGGATCAGCCCGATCCCCCTCTACGTGCTACCGATCC
CGCTGCCAGTCCTGCTGCCACAACCCGTGGTTCGGC
Found at i:32190814 original size:26 final size:26
Alignment explanation
Indices: 32190776--32190828 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32190766 TCGGTCTGAT
32190776 CTTAGACTGGGAATGAACACCGTATG
1 CTTAGACTGGGAATGAACACCGTATG
*
32190802 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACACCGTATG
32190828 C
1 C
32190829 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACCGTATG
Found at i:32191295 original size:157 final size:159
Alignment explanation
Indices: 32190925--32191305 Score: 376
Period size: 159 Copynumber: 2.4 Consensus size: 159
32190915 TACGTACTGT
** * * *
32190925 CGATCCTACTGCCGCAACCCTCATTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTA
1 CGATCCTACTGCCGCAACCCTCGGTCCGATTTGATCTTAGACTGGGAATGAACTCCATATGCTTA
* * * * * * ** * *
32190990 AGTCAACCCATAAAATGAGCGTGCGGGTGCTGAGCCAGCCGAAGCTGCATAATGCCCAAGCCGGG
66 AGCCAACACATAAAACGAGCGTGCGGGCGCTCAGCCAGCAGAAGAGGCAGAATGCACAAGCCGGG
* * **
32191055 GATCGGCCCGGTCCCTCTCTGCGTGCTGT
131 GATCAGCCCGATCCCTCTCTGCGTGCTAC
** * * * * * ** * *
32191084 CGATCCCGCTACCACAACCCTCGGTCCAACTGGGGCTTAGACAT-GGAATCAACTCCCTATGCTT
1 CGATCCTACTGCCGCAACCCTCGGTCCGATTTGATCTTAGAC-TGGGAATGAACTCCATATGCTT
* *
32191148 AAGCCAACACA-AGAAACGGGCGTGCGGGCGCTCAGCC-GACAGGAGAGGCAGAATGCACAAGCC
65 AAGCCAACACATA-AAACGAGCGTGCGGGCGCTCAGCCAG-CAGAAGAGGCAGAATGCACAAGCC
*
32191211 GGGGATTAGCCCGATCCC-C-CTGCGTGCTAC
128 GGGGATCAGCCCGATCCCTCTCTGCGTGCTAC
* * *
32191241 CGATCCTATTGCCGCAACCCTCGGTCTGGTTTGATCTTAGACTGGGAATGAACTCCATATGCTTA
1 CGATCCTACTGCCGCAACCCTCGGTCCGATTTGATCTTAGACTGGGAATGAACTCCATATGCTTA
32191306 GACTGGGGAT
Statistics
Matches: 172, Mismatches: 46, Indels: 10
0.75 0.20 0.04
Matches are distributed among these distances:
156 1 0.01
157 58 0.34
158 3 0.02
159 109 0.63
160 1 0.01
ACGTcount: A:0.23, C:0.31, G:0.25, T:0.20
Consensus pattern (159 bp):
CGATCCTACTGCCGCAACCCTCGGTCCGATTTGATCTTAGACTGGGAATGAACTCCATATGCTTA
AGCCAACACATAAAACGAGCGTGCGGGCGCTCAGCCAGCAGAAGAGGCAGAATGCACAAGCCGGG
GATCAGCCCGATCCCTCTCTGCGTGCTAC
Found at i:32191312 original size:26 final size:26
Alignment explanation
Indices: 32191276--32191328 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
32191266 CTGGTTTGAT
32191276 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
32191302 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
32191328 C
1 C
32191329 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:32191428 original size:183 final size:182
Alignment explanation
Indices: 32191118--32191672 Score: 511
Period size: 195 Copynumber: 3.0 Consensus size: 182
32191108 TCCAACTGGG
* * * * * *** * * *
32191118 GCTTAGACATGGAATCAACTCCCTATGCTTAAGCCAACACAAGAAACGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCATGAAACAAACATACGGGCACTCAG
* * * * *
32191183 -CCGACAGGAGAGGCAGAATGCACAAGCCGGGGATTAGCCCGATCCCCCTGCGTGCTACCGATCC
66 TCAGCCA-GAGAGGCAGAATGCACAAGCC-GGGATCAACCCGGTCCCCCTGCGTGCTACCGATCC
*
32191247 TATTGCCGCAACCCTCGGTCTGGTTTGATCTTAGACTGGGAATGAACTCCATAT
129 TGTTGCCGCAACCCTCGGTCTGGTTTGATCTTAGACTGGGAATGAACTCCATAT
* * * * *
32191301 GCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAACCTATGAAACAAACGTACGGGCACTCA
1 GCTTAGACAT-GGAATAAACTCCGTATGCCTAAGCCAACCCATGAAACAAACATACGGGCACTCA
* *
32191365 GTCAGCCAGAGAGGCAGAATGCACAAGCCGAGGATCGACTCGGTCCCCCTGCGTGCTACCGATCT
65 GTCAGCCAGAGAGGCAGAATGCACAAGCCG-GGATCAACCCGGTCCCCCTGCGTGCTACCGA---
* *** * * *
32191430 TGCTGCTGGTCCTGCTACTGCAAGCCTCGGTCTGGCCCGATCTTAGACTGGAAATGAACTTCGTA
126 T-C--CT-GT--TGC--C-GCAACCCTCGGTCTGGTTTGATCTTAGACTGGGAATGAACTCCATA
32191495 T
182 T
* * *
32191496 GCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCATGAAACCAGCATGCGGGCACTCAG
1 GCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCATGAAACAAACATACGGGCACTCAG
* * * * ** * *
32191561 TCGGTCGGAGAGGCAGAACGCGTAAGCCGGGATCAACCCGGTCCCCCCTGCATGCTATCGATCCT
66 TCAGCCAGAGAGGCAGAATGCACAAGCCGGGATCAACCCGGT-CCCCCTGCGTGCTACCGATCCT
* *** * *
32191626 GCTGCTATAACCCTCGGTCCGATTTGATCTTAGACTGGGAATGAACT
130 GTTGCCGCAACCCTCGGTCTGGTTTGATCTTAGACTGGGAATGAACT
32191673 TCGTATGCCT
Statistics
Matches: 298, Mismatches: 57, Indels: 34
0.77 0.15 0.09
Matches are distributed among these distances:
182 2 0.01
183 129 0.43
184 4 0.01
186 4 0.01
187 1 0.00
188 1 0.00
189 4 0.01
190 1 0.00
191 1 0.00
192 4 0.01
194 12 0.04
195 134 0.45
196 1 0.00
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.21
Consensus pattern (182 bp):
GCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCATGAAACAAACATACGGGCACTCAG
TCAGCCAGAGAGGCAGAATGCACAAGCCGGGATCAACCCGGTCCCCCTGCGTGCTACCGATCCTG
TTGCCGCAACCCTCGGTCTGGTTTGATCTTAGACTGGGAATGAACTCCATAT
Found at i:32191515 original size:26 final size:26
Alignment explanation
Indices: 32191471--32191523 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
32191461 CTGGCCCGAT
* *
32191471 CTTAGACTGGAAATGAACTTCGTATG
1 CTTAGACTGGAAATAAACTCCGTATG
32191497 CTTAGACATGG-AATAAACTCCGTATG
1 CTTAGAC-TGGAAATAAACTCCGTATG
32191523 C
1 C
32191524 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATAAACTCCGTATG
Found at i:32191833 original size:693 final size:696
Alignment explanation
Indices: 32190605--32192108 Score: 1731
Period size: 694 Copynumber: 2.2 Consensus size: 696
32190595 TTCGGCTGGG
* * * * ** *
32190605 GCTTAGAC-ATGGAATGAACTTCGTATGCCTAAGCCAAGCC-ACAAAACAAGTGTGCGGGCACTC
1 GCTTAGACTACGG-ATGAACTCCGTATGCCTAAGTCAA-CCTACGAAACAAACGTACGGGCACTC
* * * * * * * **
32190668 AACC-GATCGGAGAGGCAGAATACGCAAGCAGAGGATCGGCCCGATCCCCCTTGCGTGCTGTCGA
64 AACCAG-CCAGAGAGGCAGAATGCACAAGCCGAGGATCAGCTCGATCCCCC-TGCGTGCTACCGA
* * * * ** * * *
32190732 TCCTGCTGTTGGTCCTAGGGT-C-GCAACCCTCAAT-TCGGTCTGATCTTAGACTGGGAATGAAC
127 TCTTGCTGCTGGTCCT--GCTACTGCAAGCCTCGGTCT-GGCCCGATCTTAGACTGGAAATGAAC
* * * *
32190794 ACCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCTACAAAACGAGCGTGCGGG
189 ACCGTATGCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACAAAACCAGCATGCGGG
** * * * * * *
32190859 TGCTCAGCCGACCGGAGAGCCAAAATGCGTAAACTGAGGATCGACTCAGTCCCCCCTACGTACTG
254 CACTCAGCCGACCGGAGAGCCAAAACGCGTAAACCGAGGATCAACCCAGTCCCCCCTACATACTA
* *
32190924 TCGATCCTACTGCCGCAACCCTCATTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCT
319 TCGATCCTACTGCCACAACCCTCAGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCT
* * **
32190989 AAGTCAACCCATAAAATGAGCGTGCGGGTGCTGAGCCAGCCGAAGCTGCATAATGCCCAAGCCGG
384 AAGTCAACCCATAAAATGAGCGTGCGAGTGCTGAGCCAACCGAAGAGGCATAATGCCCAAGCCGG
* * *
32191054 GGATCGGCCCGGTCCCTCTCTGCGTGCTGTCGATCCCGCTACCACAACCCTCGGTCCAACTGGGG
449 GGATCGGCCCGGTCCCCCTCTGCGTGCTGCCGATCCCGCTACCACAACCCTCAGTCCAACTGGGG
* *
32191119 CTTAGACATGGAATCAACTCCCTATGCTTAAGCCAACACAAGAAACGGGCGTGCGGGCGCTCAGC
514 CCTAGACATGGAATCAACTCCCTATGCCTAAGCCAACACAAGAAACGGGCGTGCGGGCGCTCAGC
* * *
32191184 CGA-CAGGAGAGGCAGAATGCACAA-GCCGGGGATTAG-CCCGAT-CCCCCTGCGTGCTACCGAT
579 CGATCA-GAGAGGCAAAATGCACAAGGCC-AGGA-TAGACCCGATCCCCCCTGCATGCTACCGAT
* * ** * * **
32191245 CCTATTGCCGCAACCCTCGGTCTGGTTTGATCTTAGACTGGGAATGAACTCCATAT
641 CCTACTACCGCAACCCTCGGTCCAGTCTGATCTTACACTGAAAATGAACTCCATAT
** * *
32191301 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCTATGAAACAAACGTACGGGCACTCAG
1 GCTTAGACTACGGATGAACTCCGTATGCCTAAGTCAACCTACGAAACAAACGTACGGGCACTCAA
* *
32191366 TCAGCCAGAGAGGCAGAATGCACAAGCCGAGGATC-GACTCGGTCCCCCTGCGTGCTACCGATCT
66 CCAGCCAGAGAGGCAGAATGCACAAGCCGAGGATCAG-CTCGATCCCCCTGCGTGCTACCGATCT
**
32191430 TGCTGCTGGTCCTGCTACTGCAAGCCTCGGTCTGGCCCGATCTTAGACTGGAAATGAACTTCGTA
130 TGCTGCTGGTCCTGCTACTGCAAGCCTCGGTCTGGCCCGATCTTAGACTGGAAATGAACACCGTA
**
32191495 TGCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCATGAAACCAGCATGCGGGCACTCA
195 TGCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACAAAACCAGCATGCGGGCACTCA
* ** * * * * * *
32191560 GTCGGTCGGAGAGGCAGAACGCGTAAGCCG-GGATCAACCCGGTCCCCCCTGCATGCTATCGATC
260 GCCGACCGGAGAGCCAAAACGCGTAAACCGAGGATCAACCCAGTCCCCCCTACATACTATCGATC
* * * * * *
32191624 CTGCTGCTATAACCCTCGGTCCGATTTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCA
325 CTACTGCCACAACCCTCAGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * ** * * * * *
32191689 ACCCAT-GAATGAGTGTTTGAGTGCTGAGCTAATCGAAGAGGCATAATGCGCAAGTCGGGGATTG
390 ACCCATAAAATGAGCGTGCGAGTGCTGAGCCAACCGAAGAGGCATAATGCCCAAGCCGGGGATCG
** * **
32191753 GGTCGGTCCCCCTCTGCGTGCTGCCGGA-CCTGCTACCACAACCCTCAGTCCGGCTGGGGCCTAG
455 GCCCGGTCCCCCTCTGCGTGCTGCC-GATCCCGCTACCACAACCCTCAGTCCAACTGGGGCCTAG
* * * * *
32191817 ACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGTGTGCGGGCGCTCAGTCGATC
519 ACATGGAATCAACTCCCTATGCCTAAGCCAACACAAGAAACGGGCGTGCGGGCGCTCAGCCGATC
** * ** *
32191882 AGAGAGGCAAAATGCGTAAGGCCAGGATCGACCCGATCCCCCCTGCATGCTGTCGATCCTGCTAC
584 AGAGAGGCAAAATGCACAAGGCCAGGATAGACCCGATCCCCCCTGCATGCTACCGATCCTACTAC
*
32191947 CGCAACCCTCGGTCCAGTCTGATCTTACACTGAAAATGAACTCCGTAT
649 CGCAACCCTCGGTCCAGTCTGATCTTACACTGAAAATGAACTCCATAT
* ** * *
32191995 GCTTAGACTACGGATGAACTCCGTATGCCTAAGTCAACCTCCGAAACGTACGTGCGGGCGCTCAA
1 GCTTAGACTACGGATGAACTCCGTATGCCTAAGTCAACCTACGAAACAAACGTACGGGCACTCAA
* * * *
32192060 CCGGCCGGAGAGGCATAATGCACAAGTCGAGGATCAGCTCGATCCCCCT
66 CCAGCCAGAGAGGCAGAATGCACAAGCCGAGGATCAGCTCGATCCCCCT
32192109 CTACGTGCTG
Statistics
Matches: 672, Mismatches: 123, Indels: 28
0.82 0.15 0.03
Matches are distributed among these distances:
692 2 0.00
693 180 0.27
694 257 0.38
695 144 0.21
696 86 0.13
697 3 0.00
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (696 bp):
GCTTAGACTACGGATGAACTCCGTATGCCTAAGTCAACCTACGAAACAAACGTACGGGCACTCAA
CCAGCCAGAGAGGCAGAATGCACAAGCCGAGGATCAGCTCGATCCCCCTGCGTGCTACCGATCTT
GCTGCTGGTCCTGCTACTGCAAGCCTCGGTCTGGCCCGATCTTAGACTGGAAATGAACACCGTAT
GCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACAAAACCAGCATGCGGGCACTCAG
CCGACCGGAGAGCCAAAACGCGTAAACCGAGGATCAACCCAGTCCCCCCTACATACTATCGATCC
TACTGCCACAACCCTCAGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
CCCATAAAATGAGCGTGCGAGTGCTGAGCCAACCGAAGAGGCATAATGCCCAAGCCGGGGATCGG
CCCGGTCCCCCTCTGCGTGCTGCCGATCCCGCTACCACAACCCTCAGTCCAACTGGGGCCTAGAC
ATGGAATCAACTCCCTATGCCTAAGCCAACACAAGAAACGGGCGTGCGGGCGCTCAGCCGATCAG
AGAGGCAAAATGCACAAGGCCAGGATAGACCCGATCCCCCCTGCATGCTACCGATCCTACTACCG
CAACCCTCGGTCCAGTCTGATCTTACACTGAAAATGAACTCCATAT
Found at i:32191985 original size:158 final size:155
Alignment explanation
Indices: 32191497--32191996 Score: 450
Period size: 158 Copynumber: 3.2 Consensus size: 155
32191487 ACTTCGTATG
* * ** *
32191497 CTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCATGAAACCAGCATGCGGGCACTCAGT
1 CTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCGCTCAGT
* * * * *
32191562 CGGTCGGAGAGGCAGAACGCGTAA-GCCGGGATCAACCCGGTCCCCCCTGCATGCTATCGATCCT
65 CGATC-GAGAGGCAAAATGCGTAAGGCCGGGATCGACCCGGTCCCCCCTGCATGCTGTCGATCCT
* * * *
32191626 GCTGCTATAACCCTCGGTCCGATTTGAT
129 GCTACCACAACCCTCGGTCCG-TCTGAT
* * * ** * * *
32191654 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATG-AATGAGTGTTTGAGTGCTGAG-
1 CTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCGCTCAGT
* * * * * * *** * *
32191717 CTAATCGAAGAGGCATAATGCGCAAGTCGGGGATTGGGTCGGTCCCCCTCTGCGTGCTGCCGGA-
65 C-GATCG-AGAGGCAAAATGCGTAAGGCCGGGATCGACCCGGTCCCCC-CTGCATGCTGTC-GAT
* * **
32191781 CCTGCTACCACAACCCTCAGTCCGGCTGGGG
126 CCTGCTACCACAACCCTCGGTCCGTCT-GAT
* * *
32191812 CCTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGTGTGCGGGCGCTCAGT
1 CTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCGCTCAGT
* *
32191877 CGATCAGAGAGGCAAAATGCGTAAGGCCAGGATCGACCCGATCCCCCCTGCATGCTGTCGATCCT
65 CGATC-GAGAGGCAAAATGCGTAAGGCCGGGATCGACCCGGTCCCCCCTGCATGCTGTCGATCCT
*
32191942 GCTACCGCAACCCTCGGTCCAGTCTGAT
129 GCTACCACAACCCTCGGTCC-GTCTGAT
* *
32191970 CTTACACTGAAAATGAACTCCGTATGC
1 CTTAGACTG-GAATGAACTCCGTATGC
32191997 TTAGACTACG
Statistics
Matches: 260, Mismatches: 69, Indels: 27
0.73 0.19 0.08
Matches are distributed among these distances:
155 2 0.01
156 28 0.11
157 57 0.22
158 118 0.45
159 53 0.20
160 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.21
Consensus pattern (155 bp):
CTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCGCTCAGTC
GATCGAGAGGCAAAATGCGTAAGGCCGGGATCGACCCGGTCCCCCCTGCATGCTGTCGATCCTGC
TACCACAACCCTCGGTCCGTCTGAT
Found at i:32192352 original size:26 final size:26
Alignment explanation
Indices: 32192323--32192375 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32192313 TTGATCCGAT
32192323 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
*
32192349 CTTAGACTAGGGATGAATTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
32192375 C
1 C
32192376 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:32192409 original size:353 final size:354
Alignment explanation
Indices: 32191783--32192425 Score: 842
Period size: 353 Copynumber: 1.8 Consensus size: 354
32191773 CTGCCGGACC
*
32191783 TGCTACCACAACCCTCAGTCCGGCTGGGGCCTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
1 TGCTACCACAACCCTCAGTCCGGCTAGGGCCTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
* * * * * * * * *
32191848 CCCATGAAACGGGTGTGCGGGCGCTCAGTCGATCAGAGAGGCAAAATGCGTAAGGCCAGGATCGA
66 CCCATGAAACGAGCGTGCAGACACTCAGCCGACCAGAAAGGCAAAATGCGCAAGGCCAGGATCGA
* * * * *
32191913 CCCGATCCCCCCTGCATGCTGTCGATCCTGCTACCGCAACCCTCGGTCCAGTCTGATCTTACACT
131 CCCGAT-CCCCCTACATGCTGCCGATCCTACTACCCCAACCCTCGGTCCAGTCCGATCTTACACT
32191978 GAAAATGAACTCCGTATGCTTAGACTACGGATGAACTCCGTATGCCTAAGTCAACCTCCGAAACG
195 GAAAATGAACTCCGTATGCTTAGACTACGGATGAACTCCGTATGCCTAAGTCAACCTCCGAAACG
* * *
32192043 TACGTGCGGGCGCTCAACCGGCCGGAGAGGCATAATGCACAAGTCGAGGATCAGCTCGATCCCCC
260 AACGTGCGGGCGCTCAACCGACCAGAGAGGCATAATGCACAAGTCGAGGATCAGCTCGATCCCCC
32192108 TCTACGTGCTGTCGATCCCGTTACCGGTCT
325 TCTACGTGCTGTCGATCCCGTTACCGGTCT
* * * * *
32192138 TGCTGCCACAACCCTCGGTCTGGCTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTACCACAACCCTCAGTCCGGCTAGGGCCTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
* * * * * *
32192203 CCCATGAAATGAGCGTGCAGACACTCAGCCGGCCGGAAAGGCAGAATGCGCAAGTCGAGGATCGA
66 CCCATGAAACGAGCGTGCAGACACTCAGCCGACCAGAAAGGCAAAATGCGCAAGGCCAGGATCGA
* * * * ** *
32192268 CTCGGT-CCCCTACGTGCTGCCGATCCTACTGCCCCAACCCTCGGT-TTGATCCGATCTTAGACT
131 CCCGATCCCCCTACATGCTGCCGATCCTACTACCCCAACCCTCGGTCCAG-TCCGATCTTACACT
** * * * *
32192331 GGGAATGAACTCCGTATGCTTAGACTAGGGATGAATTCCGTATGCCTAAGTCAACC-CATGGAAC
195 GAAAATGAACTCCGTATGCTTAGACTACGGATGAACTCCGTATGCCTAAGTCAACCTC-CGAAAC
* *
32192395 GAACGTGTGGGCGCTCAGCCGACCAGAGAGG
259 GAACGTGCGGGCGCTCAACCGACCAGAGAGG
32192426 TAGGATGCGC
Statistics
Matches: 242, Mismatches: 44, Indels: 6
0.83 0.15 0.02
Matches are distributed among these distances:
352 2 0.01
353 127 0.52
355 113 0.47
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (354 bp):
TGCTACCACAACCCTCAGTCCGGCTAGGGCCTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
CCCATGAAACGAGCGTGCAGACACTCAGCCGACCAGAAAGGCAAAATGCGCAAGGCCAGGATCGA
CCCGATCCCCCTACATGCTGCCGATCCTACTACCCCAACCCTCGGTCCAGTCCGATCTTACACTG
AAAATGAACTCCGTATGCTTAGACTACGGATGAACTCCGTATGCCTAAGTCAACCTCCGAAACGA
ACGTGCGGGCGCTCAACCGACCAGAGAGGCATAATGCACAAGTCGAGGATCAGCTCGATCCCCCT
CTACGTGCTGTCGATCCCGTTACCGGTCT
Found at i:32192632 original size:25 final size:26
Alignment explanation
Indices: 32192581--32192637 Score: 96
Period size: 26 Copynumber: 2.2 Consensus size: 26
32192571 CCCATTTTCT
*
32192581 ATTTTGTGGTTCGGGATTTTTTAAAA
1 ATTTTGTGGTTCAGGATTTTTTAAAA
32192607 ATTTTGTGGTTCAGGATTTTTTAAAA
1 ATTTTGTGGTTCAGGATTTTTTAAAA
*
32192633 TTTTT
1 ATTTT
32192638 TTAGAAAAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.23, C:0.04, G:0.19, T:0.54
Consensus pattern (26 bp):
ATTTTGTGGTTCAGGATTTTTTAAAA
Found at i:32193433 original size:159 final size:157
Alignment explanation
Indices: 32193084--32193587 Score: 507
Period size: 158 Copynumber: 3.2 Consensus size: 157
32193074 GAACTCCATA
* *
32193084 AGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTGCGGGTGCTCA
1 AGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * *
32193149 GCCGGTCGAAGAGGCAAAATGCCCAAG-CTGGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGAT
66 GCCGATCGAAGAGGCAAAATGCGCAAGTC-GGGGATCG-CCCGATCCCCCCTGCGTGCTGCCGAT
* * *
32193213 CCTGCTGCCACAACCCTCGGTCCGGTCTG
129 CCTACTGCCACAACCCTCGATCCGGACTG
* * * * * * *
32193242 ATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACTAAATGAGCGTACGGGCGTTG
1 AGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTC
* * * *
32193306 AGCCGATCGGAGAGGCATAATGAGCAAGTCGGGGATCAGCCCGATCTCCCTCTGCGTGCTGCCGA
65 AGCCGATCGAAGAGGCAAAATGCGCAAGTCGGGGATC-GCCCGATC-CCCCCTGCGTGCTGCCGA
* *
32193371 TCTTACTGCCACAACCCTCGAT-CTGACTGG
128 TCCTACTGCCACAACCCTCGATCCGGACT-G
* * *
32193401 GGCTTACACATGGAATGAACT-CGCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTC
1 AGCTTAGACATGGAATGAACTCCG-TATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTC
* * * * * * * ***
32193465 AGCCGA-CTGCAGAGGTAGAATGCGTAAGTCGGGGATCGGCCCGGTCCCCCCTACATGCTATTGA
65 AGCCGATC-GAAGAGGCAAAATGCGCAAGTCGGGGATC-GCCCGATCCCCCCTGCGTGCTGCCGA
* * * **
32193529 TCCTGCTGCCACAACCCTCGGTTCGGTTTG
128 TCCTACTGCCACAACCCTCGATCCGGACTG
*
32193559 ATCTTAGAC-TGAGAATGAACTCCGTATGC
1 AGCTTAGACATG-GAATGAACTCCGTATGC
32193588 TTAGACTGGG
Statistics
Matches: 281, Mismatches: 54, Indels: 22
0.79 0.15 0.06
Matches are distributed among these distances:
157 3 0.01
158 148 0.53
159 129 0.46
160 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (157 bp):
AGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
GCCGATCGAAGAGGCAAAATGCGCAAGTCGGGGATCGCCCGATCCCCCCTGCGTGCTGCCGATCC
TACTGCCACAACCCTCGATCCGGACTG
Found at i:32193602 original size:26 final size:26
Alignment explanation
Indices: 32193561--32193613 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
32193551 TCGGTTTGAT
32193561 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
* *
32193587 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
32193613 C
1 C
32193614 GTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:32194097 original size:153 final size:156
Alignment explanation
Indices: 32193940--32194232 Score: 353
Period size: 154 Copynumber: 1.9 Consensus size: 156
32193930 TTAGACTGGT
* *** * * *
32193940 AATGAACTCCGTATGCCTATGTCAACCCACG-AACGAGCGTGCGGGCGCTGAGCCGGCC-AGAGA
1 AATGAACTCCCTATGCCTAACCCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGACCGA-AGA
*
32194003 GGCAAAATACGTAAGCTGGGGATCGA-TC-CC-CCTCTACGTGCTGTCGATCCCGCTGCCACAAC
65 GGCAAAATACGTAAGCCGGGGATCGACTCACCTCC-CTACGTGCTGTCGATCCCGCTGCCACAAC
32194065 CCTCGGTCCGACTGGGGCTTGGACATGG
129 CCTCGGTCCGACTGGGGCTTGGACATGG
* * * *
32194093 AATGAACTCCCTTTGCCTAACCCAACCCACGAAACGAGCTTACGGGTGCTCAGTCGACCGAAGAG
1 AATGAACTCCCTATGCCTAACCCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGACCGAAGAG
* * * * * *
32194158 GCAGAATGCGTAAGCCGGGGATCGACTCGATCCTCCCTGCGTGCTGTCGATCCTGCTGTCGCAAC
66 GCAAAATACGTAAGCCGGGGATCGACTC-A-CCTCCCTACGTGCTGTCGATCCCGCTGCCACAAC
32194223 CCTCGGTCCG
129 CCTCGGTCCG
32194233 GTCCGATCTT
Statistics
Matches: 115, Mismatches: 18, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
153 26 0.23
154 47 0.41
155 3 0.03
158 37 0.32
159 2 0.02
ACGTcount: A:0.22, C:0.32, G:0.28, T:0.18
Consensus pattern (156 bp):
AATGAACTCCCTATGCCTAACCCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGACCGAAGAG
GCAAAATACGTAAGCCGGGGATCGACTCACCTCCCTACGTGCTGTCGATCCCGCTGCCACAACCC
TCGGTCCGACTGGGGCTTGGACATGG
Found at i:32194253 original size:158 final size:153
Alignment explanation
Indices: 32193877--32194266 Score: 351
Period size: 153 Copynumber: 2.5 Consensus size: 153
32193867 ATCAGTCCAG
* * * ** * * *
32193877 TCCCCC-CTACGTGCTG-CTGGTCCTACTGTCGCAACCCTCGATTTGGTTCGATCTTAGACTGGT
1 TCCCCCTCTACGTGCTGTC-GATCCTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGAATGGG
* *** * * *
32193940 AATGAACTCCGTATGCCTATGTCAACCCACGAACGAGCGTGCGGGCGCTGAGCCGGCCAGAGAGG
65 AATGAACTCCCTATGCCTAACCCAACCCACGAACGAGCGTACGGGCGCTCAGCCGACCAGAGAGG
*
32194005 CAAAATACGTAAGCTGGGGATCGA
130 CAAAATACGTAAGCCGGGGATCGA
* * * * * ** *
32194029 TCCCCCTCTACGTGCTGTCGATCCCGCTGCCACAACCCTCGGTCC-GACTGGGGCTTGGACAT-G
1 TCCCCCTCTACGTGCTGTCGATCCTGCTGTCGCAACCCTCGGTCCGGTC-CGATCTTAGA-ATGG
* * * *
32194092 GAATGAACTCCCTTTGCCTAACCCAACCCACGAAACGAGCTTACGGGTGCTCAGTCGACC-GAAG
64 GAATGAACTCCCTATGCCTAACCCAACCCACG-AACGAGCGTACGGGCGCTCAGCCGACCAG-AG
* *
32194156 AGGCAGAATGCGTAAGCCGGGGATCGA
127 AGGCAAAATACGTAAGCCGGGGATCGA
* *
32194183 CTCGATCCTCC-CTGCGTGCTGTCGATCCTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGAT
1 -TC---CC-CCTCTACGTGCTGTCGATCCTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGAA
*
32194247 TGGGAATGAACTCCATATGC
61 TGGGAATGAACTCCCTATGC
32194267 TTAGACTGGG
Statistics
Matches: 183, Mismatches: 42, Indels: 20
0.75 0.17 0.08
Matches are distributed among these distances:
152 7 0.04
153 62 0.34
154 49 0.27
155 2 0.01
157 1 0.01
158 58 0.32
159 4 0.02
ACGTcount: A:0.21, C:0.32, G:0.26, T:0.22
Consensus pattern (153 bp):
TCCCCCTCTACGTGCTGTCGATCCTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGAATGGGA
ATGAACTCCCTATGCCTAACCCAACCCACGAACGAGCGTACGGGCGCTCAGCCGACCAGAGAGGC
AAAATACGTAAGCCGGGGATCGA
Found at i:32194276 original size:26 final size:26
Alignment explanation
Indices: 32194240--32194292 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
32194230 CCGGTCCGAT
*
32194240 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
32194266 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
32194292 C
1 C
32194293 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:32196204 original size:159 final size:159
Alignment explanation
Indices: 32195914--32196397 Score: 521
Period size: 159 Copynumber: 3.1 Consensus size: 159
32195904 TTAGACATAA
* * * *
32195914 AATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTA-CGGGCGCTCAGCCGGCTGGAGA
1 AATGAACTCCATATGCATAAGCCAACCCACGAAATGAGCGTAGCGGGCGCTCAGCCGGCCGGAGA
* ** *
32195978 GGCAGAATGTGCAAGCCGGGGATCGGCCCGGTCCCCCCCCGCGTGCTGTCGATCCTGCTGCTGCA
66 GGCAGAATGCGCAAGCCGGGGATCGGCCCGGT-CCCCCCTACGTGCTGTCGATCCTGCTGCCGCA
* *
32196043 ACCCTCGATCCGGTCCAATCTTAGACTGGG
130 ACCCTCGATCCAGTCCGATCTTAGACTGGG
*** * ** * *
32196073 AATGAACTCCATATGCATATTTCATCCCACGAAATGAGCG-AGCGGATGCTGAGCCGGCCGAAGA
1 AATGAACTCCATATGCATAAGCCAACCCACGAAATGAGCGTAGCGGGCGCTCAGCCGGCCGGAGA
* * * * * *
32196137 GGCACAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTACGTGCTGCCGGTCCCGTTGCCACA
66 GGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCC-CTACGTGCTGTCGATCCTGCTGCCGCA
* * **
32196202 ACCCTCGGTCCAG-CTGGGGCTTAGACAT-GG
130 ACCCTCGATCCAGTC-CGATCTTAGAC-TGGG
* * * * * *
32196232 AATGAACTCCTTATGCCTAAGCCAACCCACGAAA-CAG-GTGGTGGGCGCTCAGTCGGCCGGAGA
1 AATGAACTCCATATGCATAAGCCAACCCACGAAATGAGCGTAGCGGGCGCTCAGCCGGCCGGAGA
* * * * *
32196295 GGCAGAATGCGCAAGTCGGGGATCGGCCCGATCCCCCCTACGTGCTGTCTATCCTGCTACCGTAA
66 GGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTACGTGCTGTCGATCCTGCTGCCGCAA
* *
32196360 CCCTTGATCCAGTCTGATCTTAGACTGGG
131 CCCTCGATCCAGTCCGATCTTAGACTGGG
32196389 AATGAACTC
1 AATGAACTC
32196398 TGGGATGAAC
Statistics
Matches: 260, Mismatches: 58, Indels: 16
0.78 0.17 0.05
Matches are distributed among these distances:
156 1 0.00
157 50 0.19
158 61 0.23
159 147 0.57
160 1 0.00
ACGTcount: A:0.21, C:0.32, G:0.28, T:0.19
Consensus pattern (159 bp):
AATGAACTCCATATGCATAAGCCAACCCACGAAATGAGCGTAGCGGGCGCTCAGCCGGCCGGAGA
GGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTACGTGCTGTCGATCCTGCTGCCGCAA
CCCTCGATCCAGTCCGATCTTAGACTGGG
Found at i:32197567 original size:157 final size:156
Alignment explanation
Indices: 32197068--32197567 Score: 466
Period size: 158 Copynumber: 3.2 Consensus size: 156
32197058 ACTCCATATG
* * * *
32197068 CTTAGACAT-GGAATGAACTCCGTAGGCCTAAGCCAACCCATGAAACGAGCGTGCAGGTGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
** * * * * * * *
32197132 TCAACCAGAGAGGTAGAATGCGTAAGCTGAGGATCAACCCGGTCCCCCCTACGTGCTATCGATCT
65 T-TGCCGGAGAGGTAGAATGCGAAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTATCGATCC
* * *
32197197 TGCTGCCGCAACTCTCAGTCCGGTCTGAT
129 TGCTGCCACAACCCTCAGTCC-GTCCGAT
* * ** * * * *
32197226 CTTAGACTGAGAATGAACTCTGTATGCAAAAGTCAACCCATGAAATGAGCGTACGGGCGCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAGT
* * * * * * * * *
32197291 TGACGAAGAGGCATAATGCGCAAGCCGGGGATCGACCCAGTCCCCCTCTGCGTGCTATTGGTCCC
66 TGCCGGAGAGGTAGAATGCGAAAGCCGGGGATCGACCCGGTCCCCC-CTGCGTGCTATCGATCCT
* * * **
32197356 GCTGCCACAACCCTCAGTTCGGCTGGGG
130 GCTGCCACAACCCTCAGTCCGTC-CGAT
* * *
32197384 CTTAGA-TGTGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATG-GCGTGCGGGCACTCAG
1 CTTAGACTG-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
* * * * *
32197447 TTGGCCGGAGAGGTAGAATACGAAAGCCGGGGATCGGCTCGGTCCCCCCTGTGTGCTGTCGATCC
65 TT-GCCGGAGAGGTAGAATGCGAAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTATCGATCC
* *
32197512 TGCTGCCATAACCCTCGGTCCGATCCGAT
129 TGCTGCCACAACCCTCAGTCCG-TCCGAT
*
32197541 CTTAGACTGGGAATGAACTTCGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
32197568 TTAGATTGGG
Statistics
Matches: 265, Mismatches: 70, Indels: 15
0.76 0.20 0.04
Matches are distributed among these distances:
157 107 0.40
158 158 0.60
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (156 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAGT
TGCCGGAGAGGTAGAATGCGAAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTATCGATCCTG
CTGCCACAACCCTCAGTCCGTCCGAT
Found at i:32197594 original size:25 final size:26
Alignment explanation
Indices: 32197541--32197595 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
32197531 CCGATCCGAT
32197541 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
* *
32197567 CTTAGATTGGGGATGAAC-TCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
32197592 CTTA
1 CTTA
32197596 AGTCAACCCA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
25 11 0.41
26 16 0.59
ACGTcount: A:0.25, C:0.15, G:0.27, T:0.33
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:32204113 original size:26 final size:26
Alignment explanation
Indices: 32204084--32204134 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
32204074 CCGATCTGAT
*
32204084 CTTACACTGGGAATGAACTCCGTATA
1 CTTACACTGGGAATGAACTACGTATA
* *
32204110 CTTAGACTGGGGATGAACTACGTAT
1 CTTACACTGGGAATGAACTACGTAT
32204135 GCCTAACTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTACGTATA
Found at i:32204802 original size:159 final size:158
Alignment explanation
Indices: 32204508--32205010 Score: 411
Period size: 159 Copynumber: 3.2 Consensus size: 158
32204498 ACTCCGTATG
* * * * * *
32204508 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATAAAATGAGTGTACAGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCATAAGCCAACCCACAGAATGAGCGTGCGGGCGCTCAG
* * * * * * ** * * * * *
32204572 CTGATCGGAGAGGCAGAATGCGTAAGCTAGGGATCGGCCCAGTCCCCCCCATTGTGCTGTCAATC
65 CCGACCGAAGAGGCAGAATACGCAAGCCAAAGATCGACCCAGTCCCCCCTA-CGTGCTGCCGATC
** * * *
32204637 TTGCTGCCGTAACCCTCGGTCTGGTTTGAT
129 CAGCTGCCGCAACCCTCGGTCCGGTTCGAT
* * * * * *
32204667 CTTAGACTGGGAATGAACTCTGTATGCATAAGTCAACCGAC-GAAATGAGCGTGTGGGCGTTGAG
1 CTTAGACTGGGAATGAACTCCGTATGCATAAGCCAACCCACAG-AATGAGCGTGCGGGCGCTCAG
* * * * * * * *
32204731 CCGGCCGAAGAGGCATAATGCGCAAGTCGAGGATTGACCC-GATCCCCCTCTACGTGCTGCCGGT
65 CCGACCGAAGAGGCAGAATACGCAAGCCAAAGATCGACCCAG-TCCCCC-CTACGTGCTGCCGAT
* * * * * * **
32204795 CCCGCTGCCACAACCATCTGTCCGGCTGGGG
128 CCAGCTGCCGCAACCCTCGGTCCGGTTCGAT
* * *
32204826 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACAGAATGGGCGTGCGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCATAAGCCAACCCACAGAATGAGCGTGCGGGCGCTCAG
* * * *
32204890 CCGACCGGAGAGGCAGAATACGCAAGCCAAAGATCGACCCAGTCCCCCCTGCGTGCTGTCGATCT
65 CCGACCGAAGAGGCAGAATACGCAAGCCAAAGATCGACCCAGTCCCCCCTACGTGCTGCCGATCC
* * * *
32204955 AACTGGCGCAACCCTCGGTCCGATCCGAT
130 AGCTGCCGCAACCCTCGGTCCGGTTCGAT
32204984 CTTAGACTGGGAATGAACTCCGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
32205011 TTAGACTGGG
Statistics
Matches: 262, Mismatches: 74, Indels: 17
0.74 0.21 0.05
Matches are distributed among these distances:
157 1 0.00
158 56 0.21
159 200 0.76
160 5 0.02
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCGTATGCATAAGCCAACCCACAGAATGAGCGTGCGGGCGCTCAGC
CGACCGAAGAGGCAGAATACGCAAGCCAAAGATCGACCCAGTCCCCCCTACGTGCTGCCGATCCA
GCTGCCGCAACCCTCGGTCCGGTTCGAT
Found at i:32205013 original size:26 final size:26
Alignment explanation
Indices: 32204984--32205036 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
32204974 CCGATCCGAT
32204984 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
32205010 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
32205036 C
1 C
32205037 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:32206868 original size:158 final size:155
Alignment explanation
Indices: 32206363--32206860 Score: 496
Period size: 159 Copynumber: 3.1 Consensus size: 155
32206353 GTGGCTCAAA
* **
32206363 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAACCCACGAAACGAGAGTGCGGGCACTT
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC-AACCCACGAAACGAGCGTGCGGGCGTTT
* **
32206428 AGTCTG-CCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTTGCGTGCTATCG
65 AG-CTGATCGGAGAGGCAGAATGCGCAAGCC-GGGATCGGCCC-ATCCCCCC-TGCGTGCTGCCG
* * *
32206492 ATCCTGCTGCCACAACCCTTGGTCCGGTCCG
126 ATCCTGCTACCACAACCCTCGGTCC-GTCTG
* * * * * *
32206523 ATCTTAGACTGGGAATGAACTTCATATGCATAAGTCAACCCACGAAATGAGCGTGCGGGCGTTGA
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGTTTA
* * * * *
32206588 GCTGATTGAAAAGGCATAATGCGCAAGCCGAGGATCGGCCCGGTCCCCCTCTGCGTGCTGCCGAT
66 GCTGATCGGAGAGGCAGAATGCGCAAGCCG-GGATCGGCCC-ATCCCCC-CTGCGTGCTGCCGAT
* * *
32206653 CTTGCTACCACAACCTTCGGTCCGGCTAG
128 CCTGCTACCACAACCCTCGGTCCGTCT-G
** * ** * * *
32206682 GGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAATGCACGAAACGGGCGTTCGGACGTTT
1 ATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGTTT
* * * * *
32206746 AGCCGATCGGAGAGGTAGAATGCGCAAGCCAGGGATCGACTCATTCTCCCCTGCGTGCTGCCGAT
65 AGCTGATCGGAGAGGCAGAATGCGCAAGCC-GGGATCGGCCCA-TCCCCCCTGCGTGCTGCCGAT
* * * *
32206811 CCTACTACCGCACCCCTCGGTCTGATCTG
128 CCTGCTACCACAACCCTCGGTCCG-TCTG
32206840 ATCTTAGACTGGGAATGAACT
1 ATCTTAGACTGGGAATGAACT
32206861 TTGTATGCAT
Statistics
Matches: 274, Mismatches: 55, Indels: 20
0.79 0.16 0.06
Matches are distributed among these distances:
157 1 0.00
158 57 0.21
159 181 0.66
160 35 0.13
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.20
Consensus pattern (155 bp):
ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGTTTA
GCTGATCGGAGAGGCAGAATGCGCAAGCCGGGATCGGCCCATCCCCCCTGCGTGCTGCCGATCCT
GCTACCACAACCCTCGGTCCGTCTG
Found at i:32206892 original size:26 final size:26
Alignment explanation
Indices: 32206844--32206894 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
32206834 GATCTGATCT
**
32206844 TAGACTGGGAATGAACTTTGTATGCA
1 TAGACTGGGAATGAACTCCGTATGCA
*
32206870 TAGACTGGGGATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
32206895 CTAAGTCAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.27
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCA
Found at i:32207774 original size:26 final size:26
Alignment explanation
Indices: 32207736--32207788 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
32207726 GGCTCAAAAT
32207736 CTTAGACTGGGAATGAACCCCATATG
1 CTTAGACTGGGAATGAACCCCATATG
* *
32207762 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACCCCATATG
32207788 C
1 C
32207789 CTAAACCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACCCCATATG
Found at i:32208124 original size:159 final size:159
Alignment explanation
Indices: 32207761--32208528 Score: 561
Period size: 159 Copynumber: 4.8 Consensus size: 159
32207751 AACCCCATAT
* * * **
32207761 GCTTAGACATGGAATGAACTCCGTATGCCTAAACCAACCCACGAAACGAGCGTGCGGGCTCCCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTGAG
** * * ** * * ** *
32207826 CCGGTCGGAGAGGCAGAATGCATAAGCCGGGGATCAGCCCGGTCCCCCCTATGTGCTG-TTGATC
66 CCGACCGAAGAGGCATAATGCGCAAGCCGAGGATCAGCCCGATCCCCCCTGCGTGCTGCTAGATC
* *
32207890 CTGTTGCCACAACCCTCGGTCTGGTCT-AA
131 CTGCTGCCACAACCCTCGGTCTGG-CTGAG
* * * ** *
32207919 TCTTAGAC-TAGGAATGAAATCCGTATGCATAAGTTAACCCACGAAACAAGCGTGCAGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTGA
* * * *
32207983 GCCAACCGAAGAGGCATAATGCGCAAGCCGATGATCAGCCCAATCCCCCTCTTCGTGCTGCTAG-
65 GCCGACCGAAGAGGCATAATGCGCAAGCCGAGGATCAGCCCGATCCCCC-CTGCGTGCTGCTAGA
** * * *
32208047 TCCCACTGTCACAACTCTCGGTCTGGCTGGG
129 TCCTGCTGCCACAACCCTCGGTCTGGCTGAG
* * * * * * *
32208078 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACTCAGGAAACAGGCGTGTGAGCGCTTAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTGAG
* * * * * ** *
32208143 CCGACCGAAGAGACAAAATGTGCAAGTCGGGGATTGGCCCGGTCCCCCCTGCGTGCTGCT-GATC
66 CCGACCGAAGAGGCATAATGCGCAAGCCGAGGATCAGCCCGATCCCCCCTGCGTGCTGCTAGATC
* ** * * * *
32208207 TTGCTATCGCAACCCTCGGTATGATCTGAT
131 CTGCTGCCACAACCCTCGGTCTG-GCTGAG
* * * * * * *
32208237 G-TTAGAC-TGGGAATGAAATCTGTATGCATAAGTCAACCCACGAAACGAGCGTCCGGGCGTTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTGA
* * * * * * * * *
32208300 GCCGGCCAAAGAGGAATAATACGTAATCTGAGGATCAGCCCGATCCCTCTCTGCGTGCTGCCAG-
65 GCCGACCGAAGAGGCATAATGCGCAAGCCGAGGATCAGCCCGATCCC-CCCTGCGTGCTGCTAGA
* * *
32208364 TCCTGTTGCCACAACCCTCGATCTGACT-AGG
129 TCCTGCTGCCACAACCCTCGGTCTGGCTGA-G
* * * * * *
32208395 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAC-GGACGTACGGGTGCTTA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAG-CGTGCGGGCGCTGA
* ** * * * ** * *
32208459 GTCGGTCGGAGAGGCAGAATGCACAAGCCGAATATCGGCCC-AGTCCCCCCTGCGTGCTG-TCGA
65 GCCGACCGAAGAGGCATAATGCGCAAGCCGAGGATCAGCCCGA-TCCCCCCTGCGTGCTGCTAGA
32208522 TCCTGCT
129 TCCTGCT
32208529 ACTGCAACCC
Statistics
Matches: 458, Mismatches: 136, Indels: 32
0.73 0.22 0.05
Matches are distributed among these distances:
157 5 0.01
158 220 0.48
159 228 0.50
160 5 0.01
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTGAG
CCGACCGAAGAGGCATAATGCGCAAGCCGAGGATCAGCCCGATCCCCCCTGCGTGCTGCTAGATC
CTGCTGCCACAACCCTCGGTCTGGCTGAG
Found at i:32208303 original size:158 final size:155
Alignment explanation
Indices: 32207763--32208441 Score: 434
Period size: 158 Copynumber: 4.3 Consensus size: 155
32207753 CCCCATATGC
* * ** **
32207763 TTAGACATGGAATGAACTCCGTATGCCTAAACCAACCCACGAAACGAGCGTGCGGGC-TCCCAGC
1 TTAGAC-TGGAATGAAATCCGTATGCATAAGTCAACCCACGAAAC-AGCGTGCGGGCGT-TGAGC
** * * * ** * *
32207827 CGGTCGGAGAGGCAGAATGCATAAGCCGGGGATCAGCCCGGTCCCCCCTATGTGCTGTTGATCCT
63 CGACCGAAGAGACAAAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCCTACGTGCTGCTGATCCT
* * * *
32207892 GTTGCCACAACCCTCGGTCTGGTCTAATC
128 GCTGTCACAACCCTCGGTCT-GTCTGATG
* * *
32207921 TTAGACTAGGAATGAAATCCGTATGCATAAGTTAACCCACGAAACAAGCGTGCAGGCGCTGAGCC
1 TTAGACT-GGAATGAAATCCGTATGCATAAGTCAACCCACGAAAC-AGCGTGCGGGCGTTGAGCC
* * * ** ** *
32207986 AACCGAAGAGGCATAATGCGCAAGCCGATGATCAGCCCAATCCCCCTCTTCGTGCTGCT-AGTCC
64 GACCGAAGAGACAAAATGCGCAAGCCGGGGATCAGCCCGGTCCCCC-CTACGTGCTGCTGA-TCC
** * * **
32208050 CACTGTCACAACTCTCGGTCTGGCTGGGG
127 TGCTGTCACAACCCTCGGTCTGTCTGATG
* * * * * * * *
32208079 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACTCAGGAAACAGGCGTGTGAGCGCTT-AG
1 -TTAGAC-TGGAATGAAATCCGTATGCATAAGTCAACCCACGAAACA-GCGTGCGGGCG-TTGAG
* * ** * *
32208143 CCGACCGAAGAGACAAAATGTGCAAGTCGGGGATTGGCCCGGTCCCCCCTGCGTGCTGCTGATCT
62 CCGACCGAAGAGACAAAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCCTACGTGCTGCTGATCC
* * *
32208208 TGCTATCGCAACCCTCGGTATGATCTGATG
127 TGCTGTCACAACCCTCGGTCTG-TCTGATG
* *
32208238 TTAGACTGGGAATGAAATCTGTATGCATAAGTCAACCCACGAAACGAGCGTCCGGGCGTTGAGCC
1 TTAGACT-GGAATGAAATCCGTATGCATAAGTCAACCCACGAAAC-AGCGTGCGGGCGTTGAGCC
* * * * * * * * * * * *
32208303 GGCCAAAGAGGA-ATAATACGTAATCTGAGGATCAGCCCGATCCCTCTCTGCGTGCTGC-CAGTC
64 GACCGAAGA-GACAAAATGCGCAAGCCGGGGATCAGCCCGGTCCC-CCCTACGTGCTGCTGA-TC
* * * * *
32208366 CTGTTGCCACAACCCTCGATCTGACT-AGGG
126 CTGCTGTCACAACCCTCGGTCTGTCTGA-TG
* * * * *
32208396 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAC
1 -TTAGAC-TGGAATGAAATCCGTATGCATAAGTCAACCCACGAAAC
32208442 GGACGTACGG
Statistics
Matches: 395, Mismatches: 107, Indels: 37
0.73 0.20 0.07
Matches are distributed among these distances:
157 5 0.01
158 201 0.51
159 186 0.47
160 3 0.01
ACGTcount: A:0.25, C:0.29, G:0.25, T:0.20
Consensus pattern (155 bp):
TTAGACTGGAATGAAATCCGTATGCATAAGTCAACCCACGAAACAGCGTGCGGGCGTTGAGCCGA
CCGAAGAGACAAAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCCTACGTGCTGCTGATCCTGCT
GTCACAACCCTCGGTCTGTCTGATG
Found at i:32208338 original size:317 final size:317
Alignment explanation
Indices: 32207761--32208580 Score: 811
Period size: 317 Copynumber: 2.6 Consensus size: 317
32207751 AACCCCATAT
* * * *
32207761 GCTTAGACATGGAATGAACTCCGTATGCCTAAACCAACCCACGAAACGAGCGTGCGGGCTCCCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGCCCAG
** * * * * * *
32207826 CCGGTCGGAGAGGCAGAATGCATAAGCCGGGGATCAGCCCGGTCCCCCCTATGTGCTGTTGATCC
66 CCGACCGAAGAGACAAAATGCACAAGCCGGGGATCAGCCCGGTCCCCCCTACGTGCTGCTGATCC
* * * * *
32207891 TGTTGCCACAACCCTCGGTCTGGTCTAATCTTAGACTAGGAATGAAATCCGTATGCATAAGTTAA
131 TGCTACCACAACCCTCGGTATGATCTAATCTTAGACTAGGAATGAAATCCGTATGCATAAGTCAA
* * * * *
32207956 CCCACGAAACAAGCGTGCAGGCGCTGAGCCAACCGAAGAGGCATAATGCGCAAGCCGATGATCAG
196 CCCACGAAACAAGCGTCCAGGCGCTGAGCCAACCAAAGAGGAATAATACGCAAGCCGAGGATCAG
* * * * * * *
32208021 CCCAATCCCCCTCTTCGTGCTGCTAGTCCCACTGTCACAACTCTCGGTCTGGCTGGG
261 CCCAATCCCCCTCTGCGTGCTGCCAGTCCCACTGCCACAACCCTCGATCTGACTAGG
* * * **
32208078 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACTCAGGAAAC-AGGCGTGTGAGCGCTTA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGA-GCGTGCGAGCGCCCA
** * ** *
32208142 GCCGACCGAAGAGACAAAATGTGCAAGTCGGGGATTGGCCCGGTCCCCCCTGCGTGCTGCTGATC
65 GCCGACCGAAGAGACAAAATGCACAAGCCGGGGATCAGCCCGGTCCCCCCTACGTGCTGCTGATC
* * * * * * *
32208207 TTGCTATCGCAACCCTCGGTATGATCTGATGTTAGACTGGGAATGAAATCTGTATGCATAAGTCA
130 CTGCTACCACAACCCTCGGTATGATCTAATCTTAGACTAGGAATGAAATCCGTATGCATAAGTCA
* * * ** * * *
32208272 ACCCACGAAACGAGCGTCCGGGCGTTGAGCCGGCCAAAGAGGAATAATACGTAATCTGAGGATCA
195 ACCCACGAAACAAGCGTCCAGGCGCTGAGCCAACCAAAGAGGAATAATACGCAAGCCGAGGATCA
* * ***
32208337 GCCCGATCCCTCTCTGCGTGCTGCCAGTCCTGTTGCCACAACCCTCGATCTGACTAGG
260 GCCCAATCCCCCTCTGCGTGCTGCCAGTCCCACTGCCACAACCCTCGATCTGACTAGG
* * * * **
32208395 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACG-GACGTACGGGTGCTTA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAG-CGTGCGAGCGCCCA
* ** * * * *** * * *
32208459 GTCGGTCGGAGAGGCAGAATGCACAAGCCGAATATCGGCCCAGTCCCCCCTGCGTGCTG-TCGAT
65 GCCGACCGAAGAGACAAAATGCACAAGCCGGGGATCAGCCCGGTCCCCCCTACGTGCTGCT-GAT
** * ** * *
32208523 CCTGCTACTGCAACCCTCAGT-TCGATCCGATCTTAGACTGGGAATGAACTCCGTATGC
129 CCTGCTACCACAACCCTCGGTAT-GATCTAATCTTAGACTAGGAATGAAATCCGTATGC
32208581 TTAGACTGGG
Statistics
Matches: 410, Mismatches: 88, Indels: 10
0.81 0.17 0.02
Matches are distributed among these distances:
316 4 0.01
317 406 0.99
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (317 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGCCCAG
CCGACCGAAGAGACAAAATGCACAAGCCGGGGATCAGCCCGGTCCCCCCTACGTGCTGCTGATCC
TGCTACCACAACCCTCGGTATGATCTAATCTTAGACTAGGAATGAAATCCGTATGCATAAGTCAA
CCCACGAAACAAGCGTCCAGGCGCTGAGCCAACCAAAGAGGAATAATACGCAAGCCGAGGATCAG
CCCAATCCCCCTCTGCGTGCTGCCAGTCCCACTGCCACAACCCTCGATCTGACTAGG
Found at i:32208583 original size:26 final size:26
Alignment explanation
Indices: 32208554--32208632 Score: 113
Period size: 26 Copynumber: 3.0 Consensus size: 26
32208544 TCGATCCGAT
* *
32208554 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCTGTATG
*
32208580 CTTAGACTGGGGATGAACTTTGTATG
1 CTTAGACTGGGGATGAACTCTGTATG
* *
32208606 GTTAGATTGGGGATGAACTCTGTATG
1 CTTAGACTGGGGATGAACTCTGTATG
32208632 C
1 C
32208633 CTAAGTCAAC
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 46 1.00
ACGTcount: A:0.24, C:0.14, G:0.30, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCTGTATG
Found at i:32216936 original size:26 final size:26
Alignment explanation
Indices: 32216895--32216947 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
32216885 TCGGTCTGAT
32216895 CTTAGACTGAGAATGAACTCCATATG
1 CTTAGACTGAGAATGAACTCCATATG
* * *
32216921 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCATATG
32216947 C
1 C
32216948 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCATATG
Found at i:32217305 original size:26 final size:26
Alignment explanation
Indices: 32217276--32217326 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
32217266 CCGGTCTGAT
32217276 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
32217302 CTTAGACATGGAATGAACTCCGTAT
1 CTTAGACATGGAATGAACTCCGTAT
32217327 ACCTAAGCCA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:32218728 original size:26 final size:26
Alignment explanation
Indices: 32218688--32218739 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
32218678 TGATCTATTT
*
32218688 TTAGACTGGGAATGAACTTCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
*
32218714 TTAGACTGGGGATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
32218740 CTAAGTCCAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:32218729 original size:157 final size:157
Alignment explanation
Indices: 32218372--32218713 Score: 393
Period size: 157 Copynumber: 2.2 Consensus size: 157
32218362 ACTTCGTATG
* * * * * * *
32218372 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATAAAACGAACGTACGGGTGCTCAG
1 CTTAGAC-TGGGAATAAACTCTGTATGCCTAAGACAACCCATGAAATGAGCATACGGGTGCTCAG
** * * * * *
32218436 CCGGTCAGAGAGGCAGAATGCGTAAGCCAGGATCGACTCGGTCCCCCCTGCATGCTGTCGAACCT
65 CCACTCAGAGAGGCAGAATGCGTAAGCCAGGATCAACCCGATCCCCCCTACATGCTGCCGAACCT
* * *
32218501 ACTGCCACAACCCTCGGTCTGGTCTGAT
130 ACTGCCACAACACTCGATCTGATCTGAT
*
32218529 CTTAGACTGGGAATAAACTCTGTATGCCTAAGTCAACCCATGAAATGAGCATACGGGTGCTCAGC
1 CTTAGACTGGGAATAAACTCTGTATGCCTAAGACAACCCATGAAATGAGCATACGGGTGCTCAGC
* * *
32218594 CACTCGGAGAGGCAGAATGCGTAAGCCAGGGATCAACCCGATCCCCCCTACGTGCTGCCGATCCT
66 CACTCAGAGAGGCAGAATGCGTAAGCCA-GGATCAACCCGATCCCCCCTACATGCTGCCGAACCT
** *
32218659 ACTGCCGTAACACTCGATTTGATCT-ATT
130 ACTGCCACAACACTCGATCTGATCTGA-T
* *
32218687 TTTAGACTGGGAATGAACT-TCGTATGC
1 CTTAGACTGGGAATAAACTCT-GTATGC
32218714 TTAGACTGGG
Statistics
Matches: 156, Mismatches: 25, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
156 1 0.01
157 83 0.53
158 72 0.46
ACGTcount: A:0.26, C:0.28, G:0.24, T:0.22
Consensus pattern (157 bp):
CTTAGACTGGGAATAAACTCTGTATGCCTAAGACAACCCATGAAATGAGCATACGGGTGCTCAGC
CACTCAGAGAGGCAGAATGCGTAAGCCAGGATCAACCCGATCCCCCCTACATGCTGCCGAACCTA
CTGCCACAACACTCGATCTGATCTGAT
Found at i:32220054 original size:26 final size:26
Alignment explanation
Indices: 32220013--32220065 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32220003 CTGGTCTGAT
*
32220013 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
32220039 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
32220065 C
1 C
32220066 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:32220180 original size:355 final size:352
Alignment explanation
Indices: 32219412--32220413 Score: 857
Period size: 355 Copynumber: 2.8 Consensus size: 352
32219402 CAGCTGGCCG
* * * * *
32219412 GAGAGGTAGAATGCACAAG-TCGGGGATCAGCCCGGTCCCTCTCTACGTGCTGTCGGTCCCGCTG
1 GAGAGGTAGAATGCACAAGCT-GGGGATCAACCCGATCCC-CTCTACGTGCTGTCGATCCCACTA
*
32219476 CCACAACCCTCGGTCCGGTTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAT
64 CCACAACCCTCGGTCCGATTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA-
* * *
32219541 GAAACGGTCGTGCAAGTGCTCAGCCAGTCGGAGACGCAGAATGCACAAGTCGGGGATTGACCCAG
128 GAAACGGTCGTG-AAGGGCTCAGCCAGTCGGAGACGCAGAATGCACAAGTCGAGGACTGACCCAG
* * *
32219606 TCCCCCCTGCATGCTGCTGATCCTACTGCCGTAACCCTCGATCCGGTTCGATCTTAGACTGGGAA
192 TCCCCCCT-CATGCTGATGATCCTACTACCGCAACCCTCGATCCGGTTCGATCTTAGACTGGGAA
* * *
32219671 TGAACTCCGTATGCTTGGATTAGGGATGAACTTCGTATGACTAAGTCAACCCATGAAACGAGCGT
256 TGAACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGACTAAGTCAACCCATGAAACGAGCGT
* * * * *
32219736 GCGAGCGCTTAGCCGACCGAAGAGGCTGGCTG
321 ACGAGCGCTCAACCGACCGAAGAGGCCGGCTA
* * *** * *
32219768 GAGAGATAGAATGCGCAAGCCAAGAATCAGA-CCGATCCCCCTCTATGTGCTGTCGATCCCACTA
1 GAGAGGTAGAATGCACAAGCTGGGGATCA-ACCCGAT-CCCCTCTACGTGCTGTCGATCCCACTA
*
32219832 CCACAACCCTTGGTCCGATTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAGCCGC
64 CCACAACCCTCGGTCCGATTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA-CC-C
* ** *
32219897 A-AAACGAG-CGTG-AGGGCACTCAGCCA-TCCGGAGAGGCAGAATGCGTAAGTCGAGGACTG-T
127 AGAAACG-GTCGTGAAGGG--CTCAGCCAGT-CGGAGACGCAGAATGCACAAGTCGAGGACTGAC
* * * * * * *
32219957 CCGGTCCCCTCT-ATG-TGTTATCGATCCTGCTACCGCAACCTTTGGTCTGG-TCTGATCTTAGA
188 CCAGTCCCCCCTCATGCTG--AT-GATCCTACTACCGCAACCCTCGATCCGGTTC-GATCTTAGA
* *
32220019 CTGGGAATGAACTTCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAA
249 CTGGGAATGAACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGACTAAGTCAACCCATGAAA
* * * * *
32220084 TGAGTGTAC-AGGTGCTCAACCGACTGGAGAGGCCGG-TCA
314 CGAGCGTACGA-GCGCTCAACCGACCGAAGAGGCCGGCT-A
* * * * *
32220123 GAGAGGCATAATGCACAAGCTGGGGATCAACCCAATCCCCATCTGCGTGTTGTCGATCCCACTAT
1 GAGAGGTAGAATGCACAAGCTGGGGATCAACCCGATCCCC-TCTACGTGCTGTCGATCCCACTA-
* * * * *
32220188 CGGTCCTACTGCCATAACCCTCGATCCGACT-GAGGCTGAGACGTGGAATGAACTCCGTATGCCT
64 ----CC-A----C--AACCCTCGGTCCGATTAG-GGCTTAGACATGGAATGAACTCCCTATGCCT
* * * * * * *
32220252 AAGCCAACCCACAAAACAAGT-GTGCAAGTAG-TTAGCCAGTCGGAGAGGTAGAATGCATAAGTC
117 AAGCCAACCCA-GAAAC-GGTCGTG-AAG-GGCTCAGCCAGTCGGAGACGCAGAATGCACAAGTC
* * * * * * * * * * * *
32220315 GGGGATTGGCCCGGTCCCCTCCTGCATGCTGCTGGTCCTGCTATCGCAACCTTC-AGTCTGATCC
178 GAGGACTGACCCAGTCCCC-CCT-CATGCTGATGATCCTACTACCGCAACCCTCGA-TCCGGTTC
32220379 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
240 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
32220414 ATGGAACGAA
Statistics
Matches: 520, Mismatches: 81, Indels: 77
0.77 0.12 0.11
Matches are distributed among these distances:
352 2 0.00
353 3 0.01
354 13 0.03
355 171 0.33
356 147 0.28
357 6 0.01
358 2 0.00
360 2 0.00
361 1 0.00
365 3 0.01
366 3 0.01
367 89 0.17
368 10 0.02
369 60 0.12
370 3 0.01
371 3 0.01
372 2 0.00
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.21
Consensus pattern (352 bp):
GAGAGGTAGAATGCACAAGCTGGGGATCAACCCGATCCCCTCTACGTGCTGTCGATCCCACTACC
ACAACCCTCGGTCCGATTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAGAA
ACGGTCGTGAAGGGCTCAGCCAGTCGGAGACGCAGAATGCACAAGTCGAGGACTGACCCAGTCCC
CCCTCATGCTGATGATCCTACTACCGCAACCCTCGATCCGGTTCGATCTTAGACTGGGAATGAAC
TCCGTATGCTTAGACTAGGGATGAACTCCGTATGACTAAGTCAACCCATGAAACGAGCGTACGAG
CGCTCAACCGACCGAAGAGGCCGGCTA
Found at i:32220882 original size:163 final size:156
Alignment explanation
Indices: 32220481--32220883 Score: 339
Period size: 163 Copynumber: 2.5 Consensus size: 156
32220471 TGAGGACCAG
* * * * *
32220481 CCCGATCCCACC-CTGCATGCTGTCGATCCTGCTGTCGCAACCCTTGATCCAGTCTGATCTTAGA
1 CCCGATCCC-CCTCT-CGTGCTGTCGATCCTGCTGCCACAACCCTCGATCCGGT-TGATCTTAGA
* * * *
32220545 -TAGGAAATGAACTCCGTATGCCTAAGTCAACCCACAAAACAAGCGTGCGGGCGCTAAGCCAGCC
63 CT-GG-AATGAACTCCCTATGCCTAAGCCAACCCACAAAACAAGCGTACAGGCGCTAAGCCAGCC
* * * *
32220609 AAAGAGGCATAATGCACAAGCCGGGGATCGG
126 AAAGAGGAAGAATGCACAAGACGGGGATCGA
* * * * * **
32220640 CCCGATCCCCCTCTCGTGCCCGTCGGTCCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGT
1 CCCGATCCCCCTCTCGTG-CTGTCGAT-CCTGCTGCCACAACCCTCGATCCG-GTTGATCTTAG-
* * ** *
32220705 CCATGGAATGAACTCCCTAATGCCTAAGCCAAGCCCACGAAACGGGCGTACAGGCGC-ACAGCCG
62 AC-TGGAATGAACTCCCT-ATGCCTAAGCCAA-CCCACAAAACAAGCGTACAGGCGCTA-AGCCA
**
32220769 GCCCGGAGAGGAAGAATGTGC-CAAGACGGGGATCGA
123 G-CCAAAGAGGAAGAA--TGCACAAGACGGGGATCGA
*
32220805 CCCGGTCCCCC-CTACGTGCTGTCGATCCTGCTGCCACAACCCTCGATCCGGTTAGATCTTAGAC
1 CCCGATCCCCCTCT-CGTGCTGTCGATCCTGCTGCCACAACCCTCGATCCGGTT-GATCTTAGAC
32220869 TGGGAATTGAACTCC
64 T-GGAA-TGAACTCC
32220884 GTTTGCTTAG
Statistics
Matches: 191, Mismatches: 36, Indels: 30
0.74 0.14 0.12
Matches are distributed among these distances:
158 5 0.03
159 17 0.09
160 25 0.13
161 13 0.07
162 21 0.11
163 62 0.32
164 18 0.09
165 27 0.14
166 3 0.02
ACGTcount: A:0.23, C:0.34, G:0.25, T:0.18
Consensus pattern (156 bp):
CCCGATCCCCCTCTCGTGCTGTCGATCCTGCTGCCACAACCCTCGATCCGGTTGATCTTAGACTG
GAATGAACTCCCTATGCCTAAGCCAACCCACAAAACAAGCGTACAGGCGCTAAGCCAGCCAAAGA
GGAAGAATGCACAAGACGGGGATCGA
Found at i:32221422 original size:26 final size:26
Alignment explanation
Indices: 32221393--32221445 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
32221383 TTGATCCGAT
32221393 CTTAGAC-TAGGAATAAACTCCGTATG
1 CTTAGACAT-GGAATAAACTCCGTATG
* *
32221419 CTTAGACATGGATTGAACTCCGTATG
1 CTTAGACATGGAATAAACTCCGTATG
32221445 C
1 C
32221446 CTAAGCTAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATAAACTCCGTATG
Found at i:32221935 original size:26 final size:26
Alignment explanation
Indices: 32221894--32221946 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
32221884 CCAGTTTGAT
32221894 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
32221920 CTTAGACTAGGG-ATGAACTTCGTATG
1 CTTAGACT-GGGAATGAACTTCGTATG
32221946 C
1 C
32221947 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:32223004 original size:26 final size:26
Alignment explanation
Indices: 32222966--32223018 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32222956 TCGGTTCGAT
32222966 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
32222992 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
32223018 C
1 C
32223019 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:32223169 original size:183 final size:184
Alignment explanation
Indices: 32222807--32223175 Score: 454
Period size: 183 Copynumber: 2.0 Consensus size: 184
32222797 TCCGGTTGGG
* * *
32222807 GCTTAGGCATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTATGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGTGCTCAA
** * * * *
32222872 CCGGTCAGAGAGGCAGAATGTACAAGTCGGAGATTGGCCTGGTCCCCCCTGCGTGCTGTCGACCC
66 CCGGTCAGAGAGGCAGAATGTACAAGTCGGAGACCGGCCCGATCCCCCCTACGTGCTATCGACCC
* * * * *
32222937 TGCTGCCACAACCCTCGGTTCGGTTCGATCTTAGACTGGGAATGAACTCCGTAT
131 TGCTGCCACAACCCTCAGTCCAGTTCAATCTTAGACTGGGAATGAACTCCATAT
** * *
32222991 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGTGCTCAA
* * * * * * *
32223056 TC-GTCGGAGTGGCAGAATGTGCAAG-CTGGGGACCGGCCCGATCCCCCCTATGTGCTATCGATC
66 CCGGTCAGAGAGGCAGAATGTACAAGTC-GGAGACCGGCCCGATCCCCCCTACGTGCTATCGACC
*** *
32223119 CTGCTGTTGCAACCTTCAGTCCAGTTCAATCTTAGACTGGGAATGAACTCCATAT
130 CTGCTGCCACAACCCTCAGTCCAGTTCAATCTTAGACTGGGAATGAACTCCATAT
32223174 GC
1 GC
32223176 CTAAGTCAAC
Statistics
Matches: 155, Mismatches: 29, Indels: 3
0.83 0.16 0.02
Matches are distributed among these distances:
182 1 0.01
183 95 0.61
184 59 0.38
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.22
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGTGCTCAA
CCGGTCAGAGAGGCAGAATGTACAAGTCGGAGACCGGCCCGATCCCCCCTACGTGCTATCGACCC
TGCTGCCACAACCCTCAGTCCAGTTCAATCTTAGACTGGGAATGAACTCCATAT
Found at i:32223503 original size:26 final size:26
Alignment explanation
Indices: 32223467--32223519 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
32223457 CCGGTCCGAT
*
32223467 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
32223493 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
32223519 C
1 C
32223520 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:32224361 original size:26 final size:26
Alignment explanation
Indices: 32224332--32224384 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
32224322 CCGATTTGAT
32224332 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
**
32224358 CTTAGACTGGGGTTGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
32224384 C
1 C
32224385 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:32224568 original size:26 final size:26
Alignment explanation
Indices: 32224531--32224581 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
32224521 GGTCTGATCA
32224531 TAGACTGCGAATGAACTCCGTATGCT
1 TAGACTGCGAATGAACTCCGTATGCT
*
32224557 TAGACATG-GAATGAACTCTGTATGC
1 TAGAC-TGCGAATGAACTCCGTATGC
32224582 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (26 bp):
TAGACTGCGAATGAACTCCGTATGCT
Found at i:32226042 original size:159 final size:158
Alignment explanation
Indices: 32225748--32226242 Score: 482
Period size: 159 Copynumber: 3.1 Consensus size: 158
32225738 ACTCCATATG
* * * * *
32225748 CTTAGACTTGGAATGAACTCCGTGTGCCTAAGCCAACCCACGAAATGAGCTTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATGTGGGCGCTCAAC
* * ** ** * * *
32225813 CGGTCGGAGAGGCAGAATGCGCAAGCCAAGGATCGACCCGGTCCTCCCCTGCATACTATCGATCC
66 CGATCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCTAGTCC-CCCCTGCGTGCTACCGATCC
*
32225878 TGCTGCTGCAACCCTCGGT-TCAGTTTGAT
130 TGCTGCTGCAACCCTCGGTCT-AGTCTGAT
* * * * * * *
32225907 CTTAGACTGGGAAAGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCATGTGGGCGCTGACC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATGTGGGCGCTCAAC
* ** *
32225972 CGATCGAAGAGGCATAATGCGCAAGCCGGGGATCGACCTAGTCCCCCTCTATGTGCTACCGGTCC
66 CGATCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCTAGTCCCCC-CTGCGTGCTACCGATCC
* ** * * *
32226037 CGCTGCCACAACCCTTGATCTAG-CTGAGG
130 TGCTGCTGCAACCCTCGGTCTAGTCTGA-T
* * *
32226066 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATG-G-ACGTGCAGGTGCTC
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATGTG--GGCGCTC
* * * * *
32226128 AACCGACCGAGGAGGCAGAATGCGCAAGTCGGGGATCGA-CTCAGTCCCCCCTGCGTGCTGCCCA
63 AACCGATCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCT-AGTCCCCCCTGCGTGCTACCGA
*
32226192 TCCTGCT-TTCGCAACCCTCGGTCTAGTCTGAT
127 TCCTGCTGCT-GCAACCCTCGGTCTAGTCTGAT
*
32226224 CTTAGACTGGGAATCAACT
1 CTTAGACTGGGAATGAACT
32226243 TCATATGCTT
Statistics
Matches: 268, Mismatches: 58, Indels: 21
0.77 0.17 0.06
Matches are distributed among these distances:
157 5 0.02
158 53 0.20
159 208 0.78
160 2 0.01
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.20
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATGTGGGCGCTCAAC
CGATCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCTAGTCCCCCCTGCGTGCTACCGATCCT
GCTGCTGCAACCCTCGGTCTAGTCTGAT
Found at i:32226275 original size:26 final size:26
Alignment explanation
Indices: 32226224--32226276 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
32226214 CTAGTCTGAT
* *
32226224 CTTAGACTGGGAATCAACTTCATATG
1 CTTAGACTGGGAATAAACTCCATATG
* *
32226250 CTTAGACTGGGGATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCATATG
32226276 C
1 C
32226277 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCATATG
Found at i:32226679 original size:357 final size:355
Alignment explanation
Indices: 32225974--32226681 Score: 829
Period size: 357 Copynumber: 2.0 Consensus size: 355
32225964 CGCTGACCCG
* * * * * *
32225974 ATCGAAGAGGCATAATGCGCAAGCCGGGGATCGACCTAGTCCCCCTCTATGTGCTACCGGTCCCG
1 ATCGAAGAGGCATAATGCACAAGCCAGGGATAGACCCAGTCCCCCTCTACGTGCTACCGATCCCG
* * *
32226039 CTGCCACAACCCTTGATCTAGCTGAGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
66 CTACCACAACCCTCGATCGAGCTGAGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
* * * * * * **
32226104 CACGAAATGGACGTGCAGGTGCTCAACCGACCGAGGAGGCAGAATGCGCAAGTCGGGGATCGACT
131 CACGAAACGGACGTGCAGGCGCTCAACAGACCGAAGAGGCAGAATACGCAAGCCAAGGATCGACT
* * * * *
32226169 CAGTCCCCCCTGCGTGCTGCCCATCCTGCTTTCGCAACCCTCGGTCTAGTCTGATCTTAGACTGG
196 CAGTCCCCCCTGCATGCTACCCATCCTGCTGTCGCAACCCTCGGTCGAGTCCGATCTTAGACTGG
* * * * *
32226234 GAATCAACTTCATATGCTTAGACTGGGGATAAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
261 GAATAAACTCCATATGCTTAGACT-GGAAAAAACTCCGTATGCCTAAGCCAACCCACGAAACGAG
*
32226299 CGTGCGGGCACTCAGCTGGTCGGAGAAGCCA
325 CGTACGGGCACTCAGCTGGTCGGAGAAGCCA
* * *
32226330 ATCGGAGAGGCATAATGCACAAGCCCAGGGATTAG-CCCAGTCCCCCTCTGCGTGCTGCCGATCC
1 ATCGAAGAGGCATAATGCACAAG-CCAGGGA-TAGACCCAGTCCCCCTCTACGTGCTACCGATCC
* * * * *
32226394 CGCTACCACAACCCTCGGTCCGA-TTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCTA
64 CGCTACCACAACCCTCGAT-CGAGCTGAGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
* * **
32226458 ACCCACGAAAC-GAGCGTGCGGGCGCTCAACAGGCCGAAGAGGCAGAATACGTGAGCCAAGGATC
128 ACCCACGAAACGGA-CGTGCAGGCGCTCAACAGACCGAAGAGGCAGAATACGCAAGCCAAGGATC
* * *
32226522 -AGCTC-GATCCCCCCTGCATGCTATCGATCCTGCTGTCGGAACCCTCGGTCCGA-TCCGATCTT
192 GA-CTCAG-TCCCCCCTGCATGCTACCCATCCTGCTGTCGCAACCCTCGGT-CGAGTCCGATCTT
* * *
32226584 AGACTGGGAATGAAACTCCATATGCTTAGTCAT-GAAAAAACTCTGTATGCCTAAGCCAACCCAT
254 AGACTGGGAAT-AAACTCCATATGCTTAGAC-TGGAAAAAACTCCGTATGCCTAAGCCAACCCAC
**
32226648 GAAACGAGCGTACGGGTGCTCAG-TCGGTCGGAGA
317 GAAACGAGCGTACGGGCACTCAGCT-GGTCGGAGA
32226682 GGTAGAATGC
Statistics
Matches: 294, Mismatches: 48, Indels: 19
0.81 0.13 0.05
Matches are distributed among these distances:
356 26 0.09
357 245 0.83
358 22 0.07
359 1 0.00
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (355 bp):
ATCGAAGAGGCATAATGCACAAGCCAGGGATAGACCCAGTCCCCCTCTACGTGCTACCGATCCCG
CTACCACAACCCTCGATCGAGCTGAGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
CACGAAACGGACGTGCAGGCGCTCAACAGACCGAAGAGGCAGAATACGCAAGCCAAGGATCGACT
CAGTCCCCCCTGCATGCTACCCATCCTGCTGTCGCAACCCTCGGTCGAGTCCGATCTTAGACTGG
GAATAAACTCCATATGCTTAGACTGGAAAAAACTCCGTATGCCTAAGCCAACCCACGAAACGAGC
GTACGGGCACTCAGCTGGTCGGAGAAGCCA
Found at i:32226737 original size:184 final size:183
Alignment explanation
Indices: 32226438--32226791 Score: 419
Period size: 184 Copynumber: 1.9 Consensus size: 183
32226428 ACATGGAATG
* *
32226438 AACTCCGTATGCCTAAGCTAACCCACGAAACGAGCGTGCGGGCGCTCAACAGGCCGAAGAGGCAG
1 AACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAACAGGCCGAAGAGGCAG
* * * *
32226503 AATACGTGAGCCAAGGATCAGCTCGATCCCCCCTGCATGCTATCGATCCTGCT-GT-CGGAACCC
66 AATACGCGAGCCAAGGATCACCTCGATCCCCCCTACATGCTATCGATCCTGCTACTAC--AACCC
* * *
32226566 TCGGTCCGATCCGATCTTAGACTGGGAATGAAACTCCATATGCTTAGTCATGAAAA
129 TCGATCCGATCCAATCTTAGACTGGAAATG-AACTCCATATGCTTAGTCATGAAAA
* * * * * * *
32226622 AACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGTGCTCAGTC-GGTCGGAGAGGTA
1 AACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCA-ACAGGCCGAAGAGGCA
* ** * *
32226686 GAATGCGCGAGCCGGGGATTGACCT-GATCCCCCCTACATGCTATTGATCCTGCTACTACAACCC
65 GAATACGCGAGCCAAGGA-TCACCTCGATCCCCCCTACATGCTATCGATCCTGCTACTACAACCC
* * *
32226750 TCGATCTGGTCCAATCTTAGACTGGAAATGAAGTCCATATGC
129 TCGATCCGATCCAATCTTAGACTGGAAATGAACTCCATATGC
32226792 CTAAGTCAAC
Statistics
Matches: 142, Mismatches: 24, Indels: 9
0.81 0.14 0.05
Matches are distributed among these distances:
183 11 0.08
184 124 0.87
185 6 0.04
186 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.25, T:0.21
Consensus pattern (183 bp):
AACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAACAGGCCGAAGAGGCAG
AATACGCGAGCCAAGGATCACCTCGATCCCCCCTACATGCTATCGATCCTGCTACTACAACCCTC
GATCCGATCCAATCTTAGACTGGAAATGAACTCCATATGCTTAGTCATGAAAA
Found at i:32227109 original size:26 final size:26
Alignment explanation
Indices: 32227080--32227130 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
32227070 CCGATCCGAT
*
32227080 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
32227106 CTTAGACTGGGGATAAACTCCGTAT
1 CTTAGACTGGGAATAAACTCCGTAT
32227131 ACCTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:32227837 original size:26 final size:26
Alignment explanation
Indices: 32227799--32227851 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
32227789 GGCTCCAAAT
*
32227799 CTTAGACTGGGAATGAACCCCGTATG
1 CTTAGACTGGGAATCAACCCCGTATG
*
32227825 CTTAGAC-GTGGAATCAACTCCGTATG
1 CTTAGACTG-GGAATCAACCCCGTATG
32227851 C
1 C
32227852 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACCCCGTATG
Found at i:32228632 original size:158 final size:158
Alignment explanation
Indices: 32227825--32229274 Score: 1022
Period size: 158 Copynumber: 9.2 Consensus size: 158
32227815 ACCCCGTATG
* * *
32227825 CTTAGACGTGGAATCAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCAGC
* * * ** * * * * *
32227890 CGACCGGAGAGGTAGAATGCGCACGTTGGGGATCGGCCCGATCCCACATGCGTGCTGTTGATCCT
66 CGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGGTCCCCCTTGCGTGCTGTCGATCCT
* *
32227955 GCTGCCACAACCCTCGATCTGGTCTAAT
131 GCTGCCACAACCCTCGATCCGGTCTGAT
* * * * * ** *
32227983 CTTAGAC-TAGGAATGAACTCCGTCTGCATAA-CTCAGCCCATGAAACGAGCGTGCGGGCATTGA
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGC-CAACCCACGAAACGAGTGTGCGGGCGCTCA
* * * * * ** * *
32228046 GTCGACCGAAGAGGCAAAATGAGCAAGCTGGGGATCGG-CTCGATCTGCCTCTGCATGCTGCCGA
64 GCCGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCT-GGTCCCCCT-TGCGTGCTGTCGA
* * * * * **
32228110 TCCCGTTGGCACAACCATTGATCCGG-CTAGGG
127 TCCTGCTGCCACAACCCTCGATCCGGTCT-GAT
* * * *** * *
32228142 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAAACATGTGGGTGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCAGC
* * * * * *
32228207 TGATCGGAGAGGTAGAATGCGCAAGCCGAGGATCGGCCCGGTCCCCC-TGCGTGCTGTCGATCCT
66 CGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGGTCCCCCTTGCGTGCTGTCGATCCT
* * **
32228271 GCTGCCGCAACCCTCGGTCTAGTCTGAT
131 GCTGCCACAACCCTCGATCCGGTCTGAT
* ** * * * * * *
32228299 CTTAGA-TTGGGAATGAACTCTATATGCCTAAGTCAACCCACAAAACGAGCGTACAGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCAG
* * * * *
32228363 CCGACCGATG-GGCA-AATGCACAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCT-ACCAGT
65 CCGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGGTCCCCCT-TGCGTGCTGTCGA-T
**
32228425 -CTCGCTGCCACAACCCTCGATCCGG-CTGGGG
128 CCT-GCTGCCACAACCCTCGATCCGGTCT-GAT
* * * * * * *
32228456 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCAATGAAATGGGTGTGCAGGTGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCAGC
* * * *
32228521 CGACCGAAGAGGTAGAATGCGCAAGCCGGGGATCGGCCTGATCCCCCTTACGTGCTGCCGATCCT
66 CGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGGTCCCCCTTGCGTGCTGTCGATCCT
32228586 GCTGCCACAACCCTC-AGTCCGGTCTGAT
131 GCTGCCACAACCCTCGA-TCCGGTCTGAT
* * * * ** *
32228614 CTTAGAC-TGGAAATGAACTCTGTATGCATAAGTCAACCCACGAAACGAGCGAACGGGCGCTGAG
1 CTTAGACATGG-AATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCAG
* * * * * * *
32228678 -CTAGCCGAAGAGGCATAATGCACAAGTCGAGGATCGGCCTGGTCCCCCTCTGCATGCTGTCGGT
65 CCGA-CCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGGTCCCCCT-TGCGTGCTGTCGAT
* * **
32228742 CCTGTTGCCACAACCCTCGATCC-GACTGGGG
128 CCTGCTGCCACAACCCTCGATCCGGTCT-GAT
** * * * **
32228773 CCCAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAA-TAGGTGTATGGGCGCTCAG
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGA-GTGTGCGGGCGCTCAG
** * * * * * * *
32228837 CCGGTCAAAGAGGCAGAATGCGCAAGCAGGGGATTGGTCTGGTCCCCCCTGCGTGCTATCGATCT
65 CCGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGGTCCCCCTTGCGTGCTGTCGATCC
* * ** * * *
32228902 TACTACCGTAACCCTC-AGTTCAGTCCGAT
130 TGCTGCCACAACCCTCGA-TCCGGTCTGAT
** * * * * * * *
32228931 CTTAGAC-TGAGAATGAACTGTGTATGCATAAGTCAACCCACAAAATGAGTGTACGGGTGCTGAG
1 CTTAGACATG-GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCAG
* * * * * * * *
32228995 CC-AGCCGAAGAGGCATAATGCACAAGCCAGGGATCGACCCGGTCCCCCCCTGTGTGCTG-CAAG
65 CCGA-CCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGGT-CCCCCTTGCGTGCTGTCGA-
* * * **
32229058 TCTTGTTGCCACAACCCTCGATCCGGAT-GGGG
127 TCCTGCTGCCACAACCCTCGATCCGG-TCTGAT
* * * *
32229090 CTTAGACATGGAATGAACTCTC-TATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGTGCCCAG
1 CTTAGACATGGAATGAACTC-CGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCAG
* ** * * * * * * *
32229154 TCGGTCGAAGAGGCAGAATGCGTAAGCTGGGGATC-GACTCGATCCCCCCTGCGTGCTATTGATC
65 CCGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCT-GGTCCCCCTTGCGTGCTGTCGATC
* * *
32229218 TTGCTGTCGCAACCCTCGATCCGGTCTGAT
129 CTGCTGCCACAACCCTCGATCCGGTCTGAT
*
32229248 CTTTGAC-TGGGAATGAACTCCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
32229275 TTAGACTGGG
Statistics
Matches: 985, Mismatches: 260, Indels: 94
0.74 0.19 0.07
Matches are distributed among these distances:
155 30 0.03
156 10 0.01
157 184 0.19
158 378 0.38
159 371 0.38
160 12 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCAGC
CGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGGTCCCCCTTGCGTGCTGTCGATCCT
GCTGCCACAACCCTCGATCCGGTCTGAT
Found at i:32228805 original size:317 final size:316
Alignment explanation
Indices: 32227824--32229274 Score: 1490
Period size: 317 Copynumber: 4.6 Consensus size: 316
32227814 AACCCCGTAT
* * * * * *
32227824 GCTTAGACGTGGAATCAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGTGTGCGGGTGCTCAG
* * * * ** * * * *
32227889 TCGACCGGAGAGGTAGAATGCGCACGTTGGGGATCGGCCCGATCCCACATGCGTGCTGTTGATCC
66 CCGATCGAAGAGGTAGAATGCGCAAGCCGGGGATCGGCCTGATCCCCCCTGCGTGCTGTCGATCC
* * * * * *
32227954 TGCTGCCACAACCCTCGATCTGGTCTAATCTTAGACTAGG-AATGAACTCCGTCTGCATAACTCA
131 TGCTGCCGCAACCCTCG-TCCGGTCTGATCTTAGACT-GGAAATGAACTCTGTATGCATAAGTCA
* ** * ** * * *
32228018 GCCCATGAAACGAGCGTGCGGGCATTGAG-TCGACCGAAGAGGCAAAATG-AGCAAGCTGGGGAT
194 ACCCACAAAACGAGCGTACGGGCGCTGAGCTAGACCGAAGAGGCATAATGCA-CAAGC-GAGGAT
* * ** * * * * * *
32228081 CGGCTCGATCTGCCTCTGCATGCTGCC-GATCCCGTTGGCACAACCATTGATCCGGCTAGG
257 CGGCCCGGTCCCCCTCTGCATGCTGCCAG-TCCTGTTGCCACAACCCTCGATCCGACTGGG
***** *
32228141 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAAACATGTGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGTGTGCGGGTGCTCAG
* * * * *
32228206 CTGATCGGAGAGGTAGAATGCGCAAGCCGAGGATCGGCCCGGT-CCCCCTGCGTGCTGTCGATCC
66 CCGATCGAAGAGGTAGAATGCGCAAGCCGGGGATCGGCCTGATCCCCCCTGCGTGCTGTCGATCC
** * * * *
32228270 TGCTGCCGCAACCCTCGGTCTAGTCTGATCTTAGATTGGGAATGAACTCTATATGCCTAAGTCAA
131 TGCTGCCGCAACCCTC-GTCCGGTCTGATCTTAGACTGGAAATGAACTCTGTATGCATAAGTCAA
* * * *
32228335 CCCACAAAACGAGCGTACAGGCGCTGAGC-CGACCGATG-GGCA-AATGCACAAGCCGGGGATCG
195 CCCACAAAACGAGCGTACGGGCGCTGAGCTAGACCGAAGAGGCATAATGCACAAG-CGAGGATCG
* * * *
32228397 GCCCGGTCCCCCTCTGCGTGCTACCAGT-CTCGCTGCCACAACCCTCGATCCGGCTGGG
259 GCCCGGTCCCCCTCTGCATGCTGCCAGTCCT-GTTGCCACAACCCTCGATCCGACTGGG
* * *
32228455 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCAATGAAATGGGTGTGCAGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGTGTGCGGGTGCTCAG
* * * *
32228520 CCGACCGAAGAGGTAGAATGCGCAAGCCGGGGATCGGCCTGATCCCCCTTACGTGCTGCCGATCC
66 CCGATCGAAGAGGTAGAATGCGCAAGCCGGGGATCGGCCTGATCCCCCCTGCGTGCTGTCGATCC
*
32228585 TGCTGCCACAACCCTCAGTCCGGTCTGATCTTAGACTGGAAATGAACTCTGTATGCATAAGTCAA
131 TGCTGCCGCAACCCTC-GTCCGGTCTGATCTTAGACTGGAAATGAACTCTGTATGCATAAGTCAA
* *
32228650 CCCACGAAACGAGCGAACGGGCGCTGAGCTAG-CCGAAGAGGCATAATGCACAAGTCGAGGATCG
195 CCCACAAAACGAGCGTACGGGCGCTGAGCTAGACCGAAGAGGCATAATGCACAAG-CGAGGATCG
* * *
32228714 GCCTGGTCCCCCTCTGCATGCTGTCGGTCCTGTTGCCACAACCCTCGATCCGACTGGG
259 GCCCGGTCCCCCTCTGCATGCTGCCAGTCCTGTTGCCACAACCCTCGATCCGACTGGG
** ** ** *
32228772 GCCCAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATAGGTGTATGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGTGTGCGGGTGCTCAG
* * * * * * * * *
32228837 CCGGTCAAAGAGGCAGAATGCGCAAGCAGGGGATTGGTCTGGTCCCCCCTGCGTGCTATCGATCT
66 CCGATCGAAGAGGTAGAATGCGCAAGCCGGGGATCGGCCTGATCCCCCCTGCGTGCTGTCGATCC
* * * * * * *
32228902 TACTACCGTAACCCTCAGTTCAGTCCGATCTTAGACT-GAGAATGAACTGTGTATGCATAAGTCA
131 TGCTGCCGCAACCCTC-GTCCGGTCTGATCTTAGACTGGA-AATGAACTCTGTATGCATAAGTCA
* * * * *
32228966 ACCCACAAAATGAGTGTACGGGTGCTGAGCCAG-CCGAAGAGGCATAATGCACAAGCCAGGGATC
194 ACCCACAAAACGAGCGTACGGGCGCTGAGCTAGACCGAAGAGGCATAATGCACAAGCGA-GGATC
* * ** * *
32229030 GACCCGGTCCCCCCCTGTGTGCTGCAAGTCTTGTTGCCACAACCCTCGATCCGGA-TGGG
258 GGCCCGGTCCCCCTCTGCATGCTGCCAGTCCTGTTGCCACAACCCTCGATCC-GACTGGG
* * * *
32229089 GCTTAGACATGGAATGAACTCTCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGTGCCCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGTGTGCGGGTGCTCAG
* * * * * * * *
32229154 TCGGTCGAAGAGGCAGAATGCGTAAGCTGGGGATC-GACTCGATCCCCCCTGCGTGCTATTGATC
66 CCGATCGAAGAGGTAGAATGCGCAAGCCGGGGATCGGCCT-GATCCCCCCTGCGTGCTGTCGATC
* * * * *
32229218 TTGCTGTCGCAACCCTCGATCCGGTCTGATCTTTGACTGGGAATGAACTCCGTATGC
130 CTGCTGCCGCAACCCTCG-TCCGGTCTGATCTTAGACTGGAAATGAACTCTGTATGC
32229275 TTAGACTGGG
Statistics
Matches: 951, Mismatches: 165, Indels: 36
0.83 0.14 0.03
Matches are distributed among these distances:
313 1 0.00
314 151 0.16
315 115 0.12
316 111 0.12
317 568 0.60
318 5 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (316 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGTGTGCGGGTGCTCAG
CCGATCGAAGAGGTAGAATGCGCAAGCCGGGGATCGGCCTGATCCCCCCTGCGTGCTGTCGATCC
TGCTGCCGCAACCCTCGTCCGGTCTGATCTTAGACTGGAAATGAACTCTGTATGCATAAGTCAAC
CCACAAAACGAGCGTACGGGCGCTGAGCTAGACCGAAGAGGCATAATGCACAAGCGAGGATCGGC
CCGGTCCCCCTCTGCATGCTGCCAGTCCTGTTGCCACAACCCTCGATCCGACTGGG
Found at i:32228831 original size:159 final size:160
Alignment explanation
Indices: 32227824--32229245 Score: 818
Period size: 159 Copynumber: 9.0 Consensus size: 160
32227814 AACCCCGTAT
* * * * *
32227824 GCTTAGACGTGGAATCAACTC-CGTATGCCTAAGCCAACCCACGAAA-CGAGTGTGCGGGCGCTC
1 GCTTAGACATGGAATGAACTCTC-TATGCCTAAGCCAACCCACGAAATAGAGCGTACGGGCGCTC
* * * * ** * * * * **
32227887 AGTC-GACCGGAGAGGTAGAATGCGCACGTTGGGGATCGGCCCGATCCCAC-ATGCGTGCTGTTG
65 AG-CAGACCGAAGAGGCAGAATGCACAAGCCGAGGATCGGCCCGGTCCCCCTCTGCGTGCTGCCG
* **
32227950 ATCCTGCTGCCACAACCCTCGATCTGGTCT-AA
129 ATCCTGCTGCCACAACCCTCGATC-CGTCTGGG
* * * * * * * **
32227982 TCTTAGAC-TAGGAATGAACTC-CGTCTGCATAA-CTCAGCCCATGAAA-CGAGCGTGCGGGCAT
1 GCTTAGACAT-GGAATGAACTCTC-TATGCCTAAGC-CAACCCACGAAATAGAGCGTACGGGCGC
* * * * * * ** *
32228043 TGAGTC-GACCGAAGAGGCAAAATG-AGCAAGCTGGGGATCGGCTCGATCTGCCTCTGCATGCTG
63 TCAG-CAGACCGAAGAGGCAGAATGCA-CAAGCCGAGGATCGGCCCGGTCCCCCTCTGCGTGCTG
* * * * * * *
32228106 CCGATCCCGTTGGCACAACCATTGATCCGGCTAGG
126 CCGATCCTGCTGCCACAACCCTCGATCCGTCTGGG
* * * * * ** *
32228141 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACA-AACATGTGGGTGCTCA
1 GCTTAGACATGGAATGAACTCTCTATGCCTAAGCCAACCCACGAAATAGAGCGTACGGGCGCTCA
* * * * * *
32228205 GCTGATCGGAGAGGTAGAATGCGCAAGCCGAGGATCGGCCCGGT-CCCC-CTGCGTGCTGTCGAT
66 GCAGACCGAAGAGGCAGAATGCACAAGCCGAGGATCGGCCCGGTCCCCCTCTGCGTGCTGCCGAT
* * * *
32228268 CCTGCTGCCGCAACCCTCGGTCTAGTCT-GA
131 CCTGCTGCCACAACCCTCGATC-CGTCTGGG
* * * * *
32228298 TCTTAGA-TTGGGAATGAACTCTATATGCCTAAGTCAACCCAC-AAA-ACGAGCGTACAGGCGCT
1 GCTTAGACAT-GGAATGAACTCTCTATGCCTAAGCCAACCCACGAAATA-GAGCGTACGGGCGCT
* * * * *
32228360 GAGCCGACCGATG-GGCA-AATGCACAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTACC-
64 CAGCAGACCGAAGAGGCAGAATGCACAAGCCGAGGATCGGCCCGGTCCCCCTCTGCGTGCTGCCG
*
32228422 AGT-CTCGCTGCCACAACCCTCGATCCGGCTGGG
129 A-TCCT-GCTGCCACAACCCTCGATCCGTCTGGG
* * * * * * * *
32228455 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCAATGAAAT-GGGTGTGCAGGTGCTCA
1 GCTTAGACATGGAATGAACTCTCTATGCCTAAGCCAACCCACGAAATAGAGCGTACGGGCGCTCA
* * * * * * *
32228519 GCCGACCGAAGAGGTAGAATGCGCAAGCCGGGGATCGGCCTGATCCCCCT-TACGTGCTGCCGAT
66 GCAGACCGAAGAGGCAGAATGCACAAGCCGAGGATCGGCCCGGTCCCCCTCTGCGTGCTGCCGAT
*
32228583 CCTGCTGCCACAACCCTC-AGTCCGGTCT-GA
131 CCTGCTGCCACAACCCTCGA-TCC-GTCTGGG
* * * * * * *
32228613 TCTTAGAC-TGGAAATGAACTCTGTATGCATAAGTCAACCCACGAAA-CGAGCGAACGGGCGCTG
1 GCTTAGACATGG-AATGAACTCTCTATGCCTAAGCCAACCCACGAAATAGAGCGTACGGGCGCTC
* * * * *
32228676 AGCTAG-CCGAAGAGGCATAATGCACAAGTCGAGGATCGGCCTGGTCCCCCTCTGCATGCTGTCG
65 AGC-AGACCGAAGAGGCAGAATGCACAAGCCGAGGATCGGCCCGGTCCCCCTCTGCGTGCTGCCG
* * *
32228740 GTCCTGTTGCCACAACCCTCGATCCGACTGGG
129 ATCCTGCTGCCACAACCCTCGATCCGTCTGGG
** * * * *
32228772 GCCCAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATAG-GTGTATGGGCGCTCA
1 GCTTAGACATGGAATGAACTCTCTATGCCTAAGCCAACCCACGAAATAGAGCGTACGGGCGCTCA
* ** * * * * * * * **
32228836 GCCGGTCAAAGAGGCAGAATGCGCAAGCAGGGGATTGGTCTGGTCCCCC-CTGCGTGCTATCGAT
66 GCAGACCGAAGAGGCAGAATGCACAAGCCGAGGATCGGCCCGGTCCCCCTCTGCGTGCTGCCGAT
* * * ** * * * *
32228900 CTTACTACCGTAACCCTCAGTTCAGTC-CGA
131 CCTGCTGCCACAACCCTC-GATCCGTCTGGG
* * * * * * * * *
32228930 TCTTAGAC-TGAGAATGAACTGTGTATGCATAAGTCAACCCACAAAAT-GAGTGTACGGGTGCTG
1 GCTTAGACATG-GAATGAACTCTCTATGCCTAAGCCAACCCACGAAATAGAGCGTACGGGCGCTC
* * * *
32228993 AGCCAG-CCGAAGAGGCATAATGCACAAGCC-AGGGATCGACCCGGTCCCCCCCTGTGTGCTG-C
65 AG-CAGACCGAAGAGGCAGAATGCACAAGCCGA-GGATCGGCCCGGTCCCCCTCTGCGTGCTGCC
* * * **
32229055 AAGTCTTGTTGCCACAACCCTCGATCCGGATGGG
128 GA-TCCTGCTGCCACAACCCTCGATCCGTCTGGG
* * * * *
32229089 GCTTAGACATGGAATGAACTCTCTATGCCTAAGCCAACCCACGAAA-CGGGCGTGCGGGTGCCCA
1 GCTTAGACATGGAATGAACTCTCTATGCCTAAGCCAACCCACGAAATAGAGCGTACGGGCGCTCA
** ** * * * * * ***
32229153 GTC-GGTCGAAGAGGCAGAATGCGTAAGCTGGGGATCGACTCGATCCCCC-CTGCGTGCTATTGA
66 G-CAGACCGAAGAGGCAGAATGCACAAGCCGAGGATCGGCCCGGTCCCCCTCTGCGTGCTGCCGA
* * *
32229216 TCTTGCTGTCGCAACCCTCGATCCGGTCTG
130 TCCTGCTGCCACAACCCTCGATCC-GTCTG
32229246 ATCTTTGACT
Statistics
Matches: 964, Mismatches: 248, Indels: 103
0.73 0.19 0.08
Matches are distributed among these distances:
155 26 0.03
156 17 0.02
157 172 0.18
158 364 0.38
159 375 0.39
160 10 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (160 bp):
GCTTAGACATGGAATGAACTCTCTATGCCTAAGCCAACCCACGAAATAGAGCGTACGGGCGCTCA
GCAGACCGAAGAGGCAGAATGCACAAGCCGAGGATCGGCCCGGTCCCCCTCTGCGTGCTGCCGAT
CCTGCTGCCACAACCCTCGATCCGTCTGGG
Found at i:32230081 original size:159 final size:158
Alignment explanation
Indices: 32229653--32230155 Score: 451
Period size: 158 Copynumber: 3.2 Consensus size: 158
32229643 AACTCCGTAT
** * ** *
32229653 GCTTAGACATTGAATGGACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGTGCTCAG
1 GCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACAGGC-TGCGGGTGCTCAG
* * * * * * * **
32229718 TTGG-TCGGAGAGGTAGAATGCGCAAGCCGGGGACCAGTCTGATCTCCC-CTGCGTGCTGTCGAT
65 CTGGCT-GGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTCTGCGTGCTACCGAT
** * *
32229781 CTTGCTACCGCAACCCTTGGTCTGGTCTGA
129 CCCGCTACCACAACCCTCGGTCTGGTCTGA
* ** * * *
32229811 TCTTAGACAAGGAATGAACTCCGTATGCCTAAGTAAACCCACGAAACGAGCGC-GCGAGTGCTGA
1 GCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAAC-AG-GCTGCGGGTGCTCA
* * * * * * *
32229875 GCTGGCCGGAGAGGCATAATGCTCAAGCCGGGGATCGACTCGGTCCCCCTCTGCGTGCTACCGGT
64 GCTGGCTGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTCTGCGTGCTACCGAT
*
32229940 CCCGCTACCACAACCCTCGGT-TGGGT-TGGG
129 CCCGCTACCACAACCCTCGGTCT-GGTCT-GA
** * * * *
32229970 GCTTAGACGTGGGATGAACTCCCTATGCCTAAGCCAACCCACAAAATAGGCATGCGGGTGCTCAA
1 GCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACAGGC-TGCGGGTGCTCAG
* * **
32230035 CTGGCTGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCCT-TGCATGCTGTCGATC
65 CTGGCTGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTCTGCGTGCTACCGATC
* ** *
32230099 CTGCTGTCGCAACCCTCGGTCTGGTCTGA
130 CCGCTACCACAACCCTCGGTCTGGTCTGA
* * *
32230128 TCTTAGACTATGAATGAACTCCGTATGC
1 GCTTAGACAAGGAATGAACTCCGTATGC
32230156 TTGGACTGGG
Statistics
Matches: 270, Mismatches: 65, Indels: 20
0.76 0.18 0.06
Matches are distributed among these distances:
157 2 0.01
158 141 0.52
159 125 0.46
160 2 0.01
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.21
Consensus pattern (158 bp):
GCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACAGGCTGCGGGTGCTCAGC
TGGCTGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTCTGCGTGCTACCGATCC
CGCTACCACAACCCTCGGTCTGGTCTGA
Found at i:32237174 original size:159 final size:158
Alignment explanation
Indices: 32236819--32237227 Score: 364
Period size: 159 Copynumber: 2.6 Consensus size: 158
32236809 AACTCCGTAT
* * * **
32236819 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGTGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGAGTGCAGGTGCTCAG
* ** * * *
32236884 CCGGTCAGAGAGGTAGAATGCGCAAGTCAGGGATCGACCCGGTCCCCCCTATGAGCTATCAATCT
66 CCGATCAGAGAGACAGAATGCGCAAGCCAGGGATCGACCCGGTCCCCCCTATGAGCTACCAATCC
* * *
32236949 TGCTGTCGCAACCCTCGGTTCAGTCCGA
131 CGCTGCCACAACCCTCGGTTCAGTCCGA
* * * * * *
32236977 TCTTAGAC-TGGGAATGAACTTCGTATGCTTAAGTCAACCCACGAAATGAGAGTGCAGGTGTTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGAGTGCAGGTGCTCA
* * * * * *
32237041 GCCGATC-GAAGAGACATAATGTGCAAGCCAGGGATCGGCCTGGT-CCCCCTCTGTATGCTACCG
65 GCCGATCAG-AGAGACAGAATGCGCAAGCCAGGGATCGACCCGGTCCCCCCTATG-A-GCTACCA
* * ** *
32237104 GTCCCGCTGCCACAACCCTCGG-TCTGGTTGGG
127 ATCCCGCTGCCACAACCCTCGGTTC-AGTCCGA
* * **
32237136 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATG-G-GTATATCGGTGCTC
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGAGTGCA--GGTGCTC
* *
32237199 AGCCGGTC-GAAGAGATAGAATGCGCAAGC
64 AGCCGATCAG-AGAGACAGAATGCGCAAGC
32237228 TGGGGATTGG
Statistics
Matches: 198, Mismatches: 45, Indels: 15
0.77 0.17 0.06
Matches are distributed among these distances:
157 13 0.07
158 89 0.45
159 95 0.48
160 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.27, T:0.21
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGAGTGCAGGTGCTCAG
CCGATCAGAGAGACAGAATGCGCAAGCCAGGGATCGACCCGGTCCCCCCTATGAGCTACCAATCC
CGCTGCCACAACCCTCGGTTCAGTCCGA
Found at i:32238046 original size:159 final size:157
Alignment explanation
Indices: 32237665--32238103 Score: 450
Period size: 159 Copynumber: 2.8 Consensus size: 157
32237655 CAACCCTCGG
* * * * * *
32237665 TCCGATCTGATCTTAGACATGGAATGAACTCCGGATACCTAAGCCAACCCACGAAACGAACGTGC
1 TCCGGTCTGAGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGC
* * * * *
32237730 GGGCGCTCAGCCAGTCGGAGAGGTAGAATGCGCAAGCCGGGGATCGACCTGGTCCCCCATGTGTG
66 GGGCGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGGTCCCCCATGCGTG
* *** *
32237795 CTGTGATCCTGCTGTTGTAACCCTCAC
131 CTGTGATCCCGCTGCCATAACACTCAC
** * * * * *
32237822 TTTGGTCTGATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATAAAATGAGTGTG
1 TCCGGTCTGAGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTG
* * * * * *
32237886 CGGCCGTTGAGCCGGTCGGAGAGGCATAATGCGCATGTCGGGGATCGACCCGGTCCTCCACTGCG
65 CGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGGTCCCCCA-TGCG
* **
32237951 TGCTGTCGGTCCCGCTGCCATAACACTCGG
129 TGCTGT-GATCCCGCTGCCATAACACTCAC
* * * * *
32237981 TCCGGT-TGGGGCTTAGACATTGAATGAACTCCCTATGCCTAAGCCATCCCATGAAACGGGCGTG
1 TCCGGTCT-GAGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTG
* * ** *
32238045 CGGGTGCTCAACCGGTAAGAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGATCCCCC
65 CGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGGTCCCCC
32238104 TACATGTTGT
Statistics
Matches: 224, Mismatches: 53, Indels: 8
0.79 0.19 0.03
Matches are distributed among these distances:
156 1 0.00
157 101 0.45
158 10 0.04
159 111 0.50
160 1 0.00
ACGTcount: A:0.22, C:0.28, G:0.29, T:0.21
Consensus pattern (157 bp):
TCCGGTCTGAGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGC
GGGCGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGGTCCCCCATGCGTG
CTGTGATCCCGCTGCCATAACACTCAC
Found at i:32238697 original size:12 final size:12
Alignment explanation
Indices: 32238680--32238710 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
32238670 GAGGGATAGG
32238680 GGGCCAATATAA
1 GGGCCAATATAA
32238692 GGGCCAATATAA
1 GGGCCAATATAA
32238704 GGGCCAA
1 GGGCCAA
32238711 GTACCAGCAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.39, C:0.19, G:0.29, T:0.13
Consensus pattern (12 bp):
GGGCCAATATAA
Found at i:32239550 original size:159 final size:159
Alignment explanation
Indices: 32239130--32239564 Score: 412
Period size: 159 Copynumber: 2.7 Consensus size: 159
32239120 AACTTCGTAT
* * * *
32239130 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCACTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
** * * * * ****
32239195 CCGGTCAGAGAGGCAGAATGTGCAAGCC-AGGGATCGACCCGATCCCCCCCTGCTTGCTGTTGAT
66 CCGACCGGAGAGGCAGAATGTGCAAGCCGA-GGATCGGCCCGATCCCCCTCTGCGTGCTACCAAT
** * * *
32239259 CTTGCTACCACAACCCTCGGTTCGGTCCGA
130 CCCGCTACCACAACCCTCGGTCCAGTCAGA
* * * * * * * *
32239289 TCATAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGTGTACGGGCGTTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * *
32239353 GCC-AGCCGAAGAGGCATAATGTGCAAGTCGGGGTTCGGCCCGATCCCCCTCTGCGTGGTACCAA
65 GCCGA-CCGGAGAGGCAGAATGTGCAAGCCGAGGATCGGCCCGATCCCCCTCTGCGTGCTACCAA
* * *
32239417 TCCCG-TCGCCACAACCCTCGGTCCAGTTAGG
129 TCCCGCT-ACCACAACCCTCGGTCCAGTCAGA
* * *
32239448 GCTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
** * *
32239513 CCGACCGGAGAGGCAGAATAAGTAAGCCGAGGATCGGCTCGAT-CCCCTCTGC
66 CCGACCGGAGAGGCAGAATGTGCAAGCCGAGGATCGGCCCGATCCCCCTCTGC
32239565 ATACTATCGA
Statistics
Matches: 214, Mismatches: 56, Indels: 13
0.76 0.20 0.05
Matches are distributed among these distances:
158 11 0.05
159 201 0.94
160 2 0.01
ACGTcount: A:0.25, C:0.31, G:0.27, T:0.18
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGACCGGAGAGGCAGAATGTGCAAGCCGAGGATCGGCCCGATCCCCCTCTGCGTGCTACCAATC
CCGCTACCACAACCCTCGGTCCAGTCAGA
Found at i:32241357 original size:26 final size:26
Alignment explanation
Indices: 32241321--32241373 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
32241311 CTGATCCAAT
*
32241321 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
32241347 CTTAGACTGGGGATGAATTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
32241373 C
1 C
32241374 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:32243009 original size:26 final size:26
Alignment explanation
Indices: 32242980--32243032 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
32242970 GTTGGCTTAG
32242980 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
* *
32243006 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
32243032 G
1 G
32243033 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:32244400 original size:26 final size:26
Alignment explanation
Indices: 32244371--32244423 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
32244361 GTTGACTTAG
32244371 GCATACGGAGTTCAACCCCAGTCTAA
1 GCATACGGAGTTCAACCCCAGTCTAA
**
32244397 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCAACCCCAGTCTAA
32244423 G
1 G
32244424 ATCAAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTTCAACCCCAGTCTAA
Found at i:32245269 original size:26 final size:26
Alignment explanation
Indices: 32245239--32245291 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
32245229 GTTGACTTAG
*
32245239 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
32245265 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
32245291 G
1 G
32245292 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:32245305 original size:368 final size:355
Alignment explanation
Indices: 32244812--32245473 Score: 826
Period size: 368 Copynumber: 1.8 Consensus size: 355
32244802 CCCCGGCTTA
* * * * *
32244812 TGCATTCTGCCCCTCCGGCCGACTGAGCACCCACACGCTCGTTTCGTGGGTTGGCTTAGGCATAT
1 TGCATTATGCCCCTCCGGCCGACTGAGCACCCACACGCTCATTTCATGGGTTGACTTAGGCATAC
* * * * *
32244877 GGAGTTCATTCCATGTTTAAGCATACGGAGTTCATTCTCGATCTAAGATCGGATCGGACCGAAGG
66 GGAGTTCATCCCATGTCTAAGCATACAGAGTTCATTCCCGATCTAAGATCGGACCGGACCGAAGG
* *
32244942 TTGCGGCAGCAGGACCAACAGCAAGATCGACAGCACGTGGGGAGGGACCGGGCCGATCCCCGGCT
131 TTGCGGCAGCAGG------A--AAG---G-CAGCACGTAGGG-GGGACCAGGCCGATCCCCGGCT
*** * *
32245007 TTTGCATTCTGCCTCTCCGACCGACTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCAT
183 AGCGCATTCTACCTCTCCGACCGACTGAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCAT
* *
32245072 ACGAATTTCATTCCATGTCTAAGCCCCAGCC-AGATCGAGGGTTGTGGTAGCAGGACCTGCAACG
248 ACGAAGTTAATTCCATGTCTAAGCCCCAGCCGA-ATCGAGGGTTGTGGTAGCAGGACCTGCAACG
32245136 AGATCACCAGCACGTAGAGGGGGACTGGGCCGATCCACGAATTG
312 AGATCACCAGCACGTAGAGGGGGACTGGGCCGATCCACGAATTG
* * * * *
32245180 TGCATTATGCCTCTCCGGTCGACTGAGCGCCCTCACGCTTATTTCATGGGTTGACTTAGGCATAC
1 TGCATTATGCCCCTCCGGCCGACTGAGCACCCACACGCTCATTTCATGGGTTGACTTAGGCATAC
*
32245245 GGAGTTCATCCCCA-GTCTAAGCATACAGAGTTCATTCCC-AGTCTAAGATCGGACCGGACCGAG
66 GGAGTTCAT-CCCATGTCTAAGCATACAGAGTTCATTCCCGA-TCTAAGATCGGACCGGACCGAA
* * *
32245308 GGTTGCGGTAGCAGGATAGGCAGCACGTAGGGGGGACCAGGCCGATCCCCGGCTAGCGCATTTTA
129 GGTTGCGGCAGCAGGAAAGGCAGCACGTAGGGGGGACCAGGCCGATCCCCGGCTAGCGCATTCTA
* * * * * * *
32245373 CCTCTCTGGCCGGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTAAT
194 CCTCTCCGACCGACTGAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATACGAAGTTAAT
* *
32245438 TCCATGTCTAAGCCCCAGTCGAATCGTGGGTTGTGG
259 TCCATGTCTAAGCCCCAGCCGAATCGAGGGTTGTGG
32245474 CAGTCGGACC
Statistics
Matches: 254, Mismatches: 37, Indels: 19
0.82 0.12 0.06
Matches are distributed among these distances:
355 114 0.45
356 12 0.05
357 1 0.00
360 2 0.01
362 1 0.00
367 1 0.00
368 120 0.47
369 3 0.01
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (355 bp):
TGCATTATGCCCCTCCGGCCGACTGAGCACCCACACGCTCATTTCATGGGTTGACTTAGGCATAC
GGAGTTCATCCCATGTCTAAGCATACAGAGTTCATTCCCGATCTAAGATCGGACCGGACCGAAGG
TTGCGGCAGCAGGAAAGGCAGCACGTAGGGGGGACCAGGCCGATCCCCGGCTAGCGCATTCTACC
TCTCCGACCGACTGAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATACGAAGTTAATTC
CATGTCTAAGCCCCAGCCGAATCGAGGGTTGTGGTAGCAGGACCTGCAACGAGATCACCAGCACG
TAGAGGGGGACTGGGCCGATCCACGAATTG
Found at i:32245769 original size:26 final size:26
Alignment explanation
Indices: 32245739--32245791 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
32245729 GTTGGTTTAG
32245739 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
32245765 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
32245791 G
1 G
32245792 ATCAAACCGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:32245909 original size:184 final size:184
Alignment explanation
Indices: 32245581--32245950 Score: 497
Period size: 184 Copynumber: 2.0 Consensus size: 184
32245571 GTTGACTTAG
* ** * * * *
32245581 GCATATGGAGTTCATTCCCAGTCTAAGATTGAACTGGACTGAAGGTTGCAACAGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGAACCGAAGGTTGCAACAGCAGGATCGACA
* *
32245646 GCACATAGGGGGGATCGGGCCGATCCCCAGCTTGCACATTCTGCCACTCCGACCGACTGAGCACC
66 GCACACAGGGGGGACCGGGCCGATCCCCAGCTTGCACATTCTGCCACTCCGACCGACTGAGCACC
* * * *
32245711 CGCACGCTCGTTTCATGGGTTGGTTTAGGCATACGGAGTTCATTCCATGTCTAA
131 CACACGCCCGTTTCATGGGCTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* *** *
32245765 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGAACCGAGGGTTGTGGCAGCAGGGTCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGAACCGAAGGTTGCAACAGCAGGATCGACA
* * * * * * *
32245830 GCACGCAGGGGGGACCGGGCCGATCTCCGGCTTGTACATTCTGCCTCTCCGACCGGCTGAGCGCC
66 GCACACAGGGGGGACCGGGCCGATCCCCAGCTTGCACATTCTGCCACTCCGACCGACTGAGCACC
* *
32245895 CATACGCCCGTTTCATGGGCTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
131 CACACGCCCGTTTCATGGGCTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
32245949 GC
1 GC
32245951 CCCAACCGGA
Statistics
Matches: 159, Mismatches: 27, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
184 159 1.00
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.22
Consensus pattern (184 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGAACCGAAGGTTGCAACAGCAGGATCGACA
GCACACAGGGGGGACCGGGCCGATCCCCAGCTTGCACATTCTGCCACTCCGACCGACTGAGCACC
CACACGCCCGTTTCATGGGCTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
Found at i:32246090 original size:26 final size:26
Alignment explanation
Indices: 32246061--32246113 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
32246051 GTTGGCTTAG
* *
32246061 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGACTTCATTCCCA-GTCTAA
*
32246087 GCATATAGACTTCATTCCCAGTCTAA
1 GCATACAGACTTCATTCCCAGTCTAA
32246113 G
1 G
32246114 AGTTTGAGCC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGACTTCATTCCCAGTCTAA
Found at i:32246813 original size:26 final size:26
Alignment explanation
Indices: 32246783--32246835 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
32246773 GTTGACTTAG
32246783 GCATACGAAGTTCA-TCCCTAGTCTAA
1 GCATACGAAGTTCATTCCC-AGTCTAA
32246809 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
32246835 G
1 G
32246836 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:32248681 original size:26 final size:26
Alignment explanation
Indices: 32248651--32248703 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32248641 GTTGACTTAG
*
32248651 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGAAGTTCATTCCC-AGTCTAA
32248677 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
32248703 G
1 G
32248704 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:32249136 original size:354 final size:354
Alignment explanation
Indices: 32248633--32249310 Score: 843
Period size: 354 Copynumber: 1.9 Consensus size: 354
32248623 TGTACACTCA
* * *
32248633 TTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAGCATACGAAGTTCATTCCCAG
1 TTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCTAATCCAAGCATACGAAGTTCATTCCCAG
* * * *
32248698 TCTAAGATCAGACCAGACCAAAGGTTGCGGTAGCAGGATCGATAACACATAGAGGGGACCGGACA
66 TCTAAGATCAGACCAGACCAAAGGTTACGGCAGCAGGATCGACAACACACAGAGGGGACCGGACA
* *
32248763 GTCCTCGACTTACGCATTCTGCCTCTCCGGA-TGGCTGAGTGC-CCT-CACG-CTCGTTT-TGCG
131 ATCCCCGACTTACGCATTCTGCCTCTCC-GACTGGCTGA--GCACCTGCACGAC-CGTTTATG-G
* *
32248823 GCTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAATCGGA-CAAGGGTTGTGGTAG
191 G-TTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAACCGGACCAAGGGTTGTGGCAG
* * * * * * ** * *
32248887 TGGGATCGACAGCACATAGAGGGGGATCGGTCTGATTCTTGGCTTGCGCATTCTATCTCTCCAGC
255 CGGGACCGACAGCACATAGAGAGGGACCGGGCTGATCCCCGACTTGCGCATTCTACCTCTCCAGC
32248952 CAGCCTCTTCGGTCGGCTAAGCGCTCGCACGCTCG
320 CAGCCTCTTCGGTCGGCTAAGCGCTCGCACGCTCG
* *
32248987 TTTCATGGGTTGACTTAGTCATACGAAGTTCATCCCTAATCCAAGCATACGGAGTTCATTCCCAG
1 TTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCTAATCCAAGCATACGAAGTTCATTCCCAG
* * * * * * * *
32249052 TCTAAGATC-GAACCGGATCGAGGGTTACGGCAGTAGGATC-AGCAGCACGCAG-GGGGACTGGG
66 TCTAAGATCAG-ACCAGACCAAAGGTTACGGCAGCAGGATCGA-CAACACACAGAGGGGAC-CGG
* ** * *
32249114 TCAATCCCCGACTTGTGCATTCTGCGTCTCCGACTGGCTGAGCACTTGCACGACCGTTTCATGGG
128 ACAATCCCCGACTTACGCATTCTGCCTCTCCGACTGGCTGAGCACCTGCACGACCGTTT-ATGGG
*
32249179 TTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAACCGGACCGAGGGTTGTGGCAGCG
192 TTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAACCGGACCAAGGGTTGTGGCAGCG
* * *
32249244 GGACCGACAGCACGTAGAGAGGGACCGGGCTGATCCCCGACTTGTGCATTCTACCTCTCCGGCCA
257 GGACCGACAGCACATAGAGAGGGACCGGGCTGATCCCCGACTTGCGCATTCTACCTCTCCAGCCA
32249309 GC
322 GC
32249311 TGAGCACCTG
Statistics
Matches: 274, Mismatches: 40, Indels: 19
0.82 0.12 0.06
Matches are distributed among these distances:
352 2 0.01
353 12 0.04
354 186 0.68
355 72 0.26
356 2 0.01
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (354 bp):
TTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCTAATCCAAGCATACGAAGTTCATTCCCAG
TCTAAGATCAGACCAGACCAAAGGTTACGGCAGCAGGATCGACAACACACAGAGGGGACCGGACA
ATCCCCGACTTACGCATTCTGCCTCTCCGACTGGCTGAGCACCTGCACGACCGTTTATGGGTTGG
CTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAACCGGACCAAGGGTTGTGGCAGCGGGAC
CGACAGCACATAGAGAGGGACCGGGCTGATCCCCGACTTGCGCATTCTACCTCTCCAGCCAGCCT
CTTCGGTCGGCTAAGCGCTCGCACGCTCG
Found at i:32250003 original size:25 final size:26
Alignment explanation
Indices: 32249974--32250024 Score: 86
Period size: 25 Copynumber: 2.0 Consensus size: 26
32249964 GTGGACTTAG
*
32249974 GCATACGGAGTTCA-TCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
32249999 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
32250025 AAATAGATCA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 13 0.54
26 11 0.46
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:32250361 original size:26 final size:26
Alignment explanation
Indices: 32250311--32250363 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
32250301 GTTGGCTTAG
* *
32250311 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCATATCTAA
32250337 GCATACGAAGTTCATTCCCA-ATCTAA
1 GCATACGAAGTTCATT-CCATATCTAA
32250363 G
1 G
32250364 ATCGGATCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATATCTAA
Found at i:32250549 original size:26 final size:26
Alignment explanation
Indices: 32250520--32250571 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
32250510 GTTGACTTAG
*
32250520 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
32250546 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
32250572 TATCAGACCG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:32250887 original size:26 final size:26
Alignment explanation
Indices: 32250857--32250909 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
32250847 GTTAACTTAG
*
32250857 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
32250883 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
32250909 G
1 G
32250910 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:32251309 original size:158 final size:157
Alignment explanation
Indices: 32250883--32251379 Score: 544
Period size: 158 Copynumber: 3.2 Consensus size: 157
32250873 CCCAGTCTAA
* * * *
32250883 GCATACAGAGTTCATTCCCA-GTCTAAGATCGGACCAGACCGA-GGTTGTGGCAGCAGGATCGAC
1 GCATACA-AGTTCATT-CCATGTCTAAGATCAGACTAGACCGAGGGTTGTGGCAGTAGGATCGAT
* * * * *
32250946 AGCATGCAGGGGGGACCGGGCTGATCCTCGACTTGTGCATTTTGCCTCTCCGATCGACTGAGCGC
64 AGCATGCAGGGGGGACCAGGCCGATCCTCGACTTGCGCATTCTGCCTCTCCAATCGACTGAGCGC
* * *
32251011 CAGCACGCCCGTTTCGTGGGTTGGCTTAG
129 CCGCACGCTCGTTTCATGGGTTGGCTTAG
* * ** *
32251040 GCAT---AGTTCATTCTATGTGTAAGCCCCAG-CT-GAACCGAGGGTTGTGGCAGT-GAGACCGA
1 GCATACAAGTTCATTCCATGTCTAAG-ATCAGACTAG-ACCGAGGGTTGTGGCAGTAG-GATCGA
* * * * * * *
32251099 TAGCACGTAGAGGGGGACCAGGCCGATCCCCGACTTGCGCATTGTGCCTCTCCAATCGGCTCAAC
63 TAGCATGCAG-GGGGGACCAGGCCGATCCTCGACTTGCGCATTCTGCCTCTCCAATCGACTGAGC
* * *
32251164 GCCCGAACACTCGTTTCATGGGTTGACTTAG
127 GCCCGCACGCTCGTTTCATGGGTTGGCTTAG
**
32251195 GCATACGAAGTTCATTCCCA-GTCTAAGATCAGACTAGACCGAGGGTTGCAGCAGTAGGATCGAT
1 GCATAC-AAGTTCATT-CCATGTCTAAGATCAGACTAGACCGAGGGTTGTGGCAGTAGGATCGAT
* * * *
32251259 AGCATGCAGGGGGGACCAGGCCAATCCTTGACTTACGCATTCTGCCTCTCCAGTCGACTGAGCGC
64 AGCATGCAGGGGGGACCAGGCCGATCCTCGACTTGCGCATTCTGCCTCTCCAATCGACTGAGCGC
32251324 CCGCACGCTCGTTTCATGGGTTGGCTTAG
129 CCGCACGCTCGTTTCATGGGTTGGCTTAG
*
32251353 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATAC-AAGTTCATTCCATGTCTAAG
32251380 CATACGGAGT
Statistics
Matches: 277, Mismatches: 48, Indels: 29
0.78 0.14 0.08
Matches are distributed among these distances:
152 3 0.01
153 21 0.08
154 25 0.09
155 74 0.27
157 7 0.03
158 98 0.35
159 45 0.16
160 4 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (157 bp):
GCATACAAGTTCATTCCATGTCTAAGATCAGACTAGACCGAGGGTTGTGGCAGTAGGATCGATAG
CATGCAGGGGGGACCAGGCCGATCCTCGACTTGCGCATTCTGCCTCTCCAATCGACTGAGCGCCC
GCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:32251383 original size:26 final size:26
Alignment explanation
Indices: 32251353--32251405 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
32251343 GTTGGCTTAG
32251353 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
32251379 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
32251405 G
1 G
32251406 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:32251762 original size:25 final size:26
Alignment explanation
Indices: 32251727--32251778 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
32251717 GTTGACTTAG
32251727 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
32251753 GCATA-GGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
32251778 G
1 G
32251779 ATCAGACCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 19 0.79
26 5 0.21
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:32252284 original size:26 final size:26
Alignment explanation
Indices: 32252248--32252300 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
32252238 GTTGACTTAG
32252248 GCATACGGAGTTCA-TCCTCAGTCTAA
1 GCATACGGAGTTCATTCC-CAGTCTAA
32252274 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
32252300 G
1 G
32252301 ATCAGATCGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:32252496 original size:26 final size:26
Alignment explanation
Indices: 32252446--32252496 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
32252436 TGGCTTATGT
* *
32252446 ATACGGAGTTCATTTCATGTTTAAGC
1 ATACGGAGTTCATTCCATGTCTAAGC
32252472 ATACGGAGTTCATTCCCA-GTCTAAG
1 ATACGGAGTTCATT-CCATGTCTAAG
32252497 ATTTTGAGCC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 20 0.91
27 2 0.09
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.33
Consensus pattern (26 bp):
ATACGGAGTTCATTCCATGTCTAAGC
Found at i:32259395 original size:26 final size:26
Alignment explanation
Indices: 32259345--32259396 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
32259335 GTTGACTTAG
*
32259345 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
*
32259371 GCATATGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
32259397 CATTTTGAGC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:32260085 original size:26 final size:26
Alignment explanation
Indices: 32260049--32260117 Score: 95
Period size: 26 Copynumber: 2.7 Consensus size: 26
32260039 GCACGCTCGT
32260049 TTCATACCCAGTCTAAGCATA-GAGAG
1 TTCATACCCAGTCTAAGCATACGA-AG
*
32260075 TTCATCCCCAGTCTAAGCATACGAAG
1 TTCATACCCAGTCTAAGCATACGAAG
* *
32260101 TTCATTCCCAATCTAAG
1 TTCATACCCAGTCTAAG
32260118 ATCAGACCGG
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
26 37 0.95
27 2 0.05
ACGTcount: A:0.32, C:0.28, G:0.14, T:0.26
Consensus pattern (26 bp):
TTCATACCCAGTCTAAGCATACGAAG
Found at i:32260691 original size:316 final size:314
Alignment explanation
Indices: 32260101--32260911 Score: 968
Period size: 316 Copynumber: 2.6 Consensus size: 314
32260091 GCATACGAAG
* * * * * *
32260101 TTCATTCCCAATCTAAGATCAGACCGGACTGAAGGTTGC-AGCAGCAAGATCGGCAGCACGCAAG
1 TTCATTCCCAGTCTAAGATCAGACCAGACCGAAGGTTGCGA-CAGCAGGATC-GCAGCACGTAGG
* * * * *
32260165 GGGGACCCA-GCCTATCCCCGACTTGCACATTCTGCCTCTCCTGCCGGCTGAGCACCCGCACGTC
64 GGGGA-TCAGGCCGAT-CCCGGCTTGCGCATTCTGCCTCTCC-GCCGGCTGAGCGCCCGCACG-C
*
32260229 C-GTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCCAGCCAGACCGAG
125 CTGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAG-CCCCAGCCAGACCAAG
* * * * * *
32260293 GGTTGTGGCAGCGGGACTGGCAGCATGCAGAGGGGGATTGGGCTGACCCTCGGCTTGCGCATTAT
189 AGTTGTGGCAGCAGGACTGGCAGCACGAAGAGGGGGATCGGGCCGACCCTCGGCTTGCGCATTAT
* ** * **
32260358 GCCTCTTTGGTCGGCTCAATGCCCGGACGCTTGTTTCATGGGTTGACTTATGCATACAGAT
254 GCCTCTTCGGTCGGCTCAACACCCGCACGCTCATTTCATGGGTTGACTTATGCATACAGAT
* *
32260419 TTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGACAGCAGGATCAGCAGCACGTAGGG
1 TTCATTCCCAGTCTAAGATCAGACCAGACCGAAGGTTGCGACAGCAGGATC-GCAGCACGTAGGG
* * *
32260484 GGGATCAGGCCGATCCCGGCTTGCGCATTCTGTCTCTCCGATCAGCTGAGCGCTCC-CACGCCTG
65 GGGATCAGGCCGATCCCGGCTTGCGCATTCTGCCTCTCCG-CCGGCTGAGCGC-CCGCACGCCTG
* * *
32260548 TTTCATGGGTTGGCTTAGGCATAGGGAATTCATTCCATGTCTAAGCCCCAGGCAGACCAAGAGTT
128 TTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAGAGTT
* * *
32260613 GTGGTAGCAGGACTGGTAGCACGAAGAGGGGGATCGGGCCGATCCTCGGCTTGCGCATTATGCCT
193 GTGGCAGCAGGACTGGCAGCACGAAGAGGGGGATCGGGCCGACCCTCGGCTTGCGCATTATGCCT
* * * * *
32260678 CTTCGGTCGGCTCAGCACCCGCATGCTCATTTCGTGGGTTGACTTATGGATACGGAT
258 CTTCGGTCGGCTCAACACCCGCACGCTCATTTCATGGGTTGACTTATGCATACAGAT
* ** *
32260735 TTCATTCCCAGTCTAAGATCAGACCAGATC-AATGGTTGCGGTAGCAGGATCGACAGTACGTATG
1 TTCATTCCCAGTCTAAGATCAGACCAGACCGAA-GGTTGCGACAGCAGGATCG-CAGCACGTA-G
* * * * * *
32260799 GGGGGATCGGGCCGATCTCCGGCTTGCGCATTTTGGCTTTCCGGCCGGTTGAGTGCCCGCACG-C
63 GGGGGATCAGGCCGATC-CCGGCTTGCGCATTCTGCCTCTCC-GCCGGCTGAGCGCCCGCACGCC
* *
32260863 TCGTTTCATGGGTTGGTTTAGGCATACGGAGTTCATTCCATGTCTAAGC
126 T-GTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGC
32260912 ATACGGGGTT
Statistics
Matches: 423, Mismatches: 58, Indels: 24
0.84 0.11 0.05
Matches are distributed among these distances:
315 2 0.00
316 175 0.41
317 102 0.24
318 142 0.34
319 2 0.00
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.24
Consensus pattern (314 bp):
TTCATTCCCAGTCTAAGATCAGACCAGACCGAAGGTTGCGACAGCAGGATCGCAGCACGTAGGGG
GGATCAGGCCGATCCCGGCTTGCGCATTCTGCCTCTCCGCCGGCTGAGCGCCCGCACGCCTGTTT
CATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAGAGTTGTG
GCAGCAGGACTGGCAGCACGAAGAGGGGGATCGGGCCGACCCTCGGCTTGCGCATTATGCCTCTT
CGGTCGGCTCAACACCCGCACGCTCATTTCATGGGTTGACTTATGCATACAGAT
Done.