Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 352 of 402
Found at i:32260740 original size:159 final size:159
Alignment explanation
Indices: 32260091--32260912 Score: 647
Period size: 159 Copynumber: 5.2 Consensus size: 159
32260081 CCCAGTCTAA
* * * * * * *
32260091 GCATACGAAGTTCATTCCCA-ATCTAAG-ATCAGACCGGACTGAA-GGTTGCAGCAGCAAGATCG
1 GCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCAGAC-CAAGGGTTGCGGCAGCAGGATCG
* ** * * * * * * * *
32260153 GCAGCACGCAA-GGGGGACCCAGCCTATCCCCGACTTGCACATTCTGCCTCTCCTGCCGGCTGAG
64 GCAGCACG-AAGGGGGGATCGGGCCGATCCTCGGCTTGCGCATTATGCCTCTTCGGTCGGCTGAG
*
32260217 CACCCGCACG-TCCGTTTCATGGGTTGGCTTAG
128 CGCCCGCACGCT-CGTTTCATGGGTTGGCTTAG
* * * * *
32260249 GCATAAGGAGTTCATTCCATGTCTAAGCCCCCAG-CCAGACCGAGGGTTGTGGCAGCGGGA-CTG
1 GCATACGGAGTTCATTCCATGTCTAAG-CACCAGACCAGACCAAGGGTTGCGGCAGCAGGATC-G
* * * * * * * *
32260312 GCAGCATGCAGAGGGGGATTGGGCTGACCCTCGGCTTGCGCATTATGCCTCTTTGGTCGGCTCAA
64 GCAGCACGAAG-GGGGGATCGGGCCGATCCTCGGCTTGCGCATTATGCCTCTTCGGTCGGCTGAG
* * * * *
32260377 TGCCCGGACGCTTGTTTCATGGGTTGACTTAT
128 CGCCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * * * * * *
32260409 GCATACAGATTTCATTCCCA-GTCTAAG-ATCAGATCAGACCGAGGGTTGCGACAGCAGGATCAG
1 GCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCAGACCAAGGGTTGCGGCAGCAGGATCGG
* * * * * * *
32260472 CAGCACGTAGGGGGGATCAGGCCGATCC-CGGCTTGCGCATTCTGTCTCTCCGATCAGCTGAGCG
65 CAGCACGAAGGGGGGATCGGGCCGATCCTCGGCTTGCGCATTATGCCTCTTCGGTCGGCTGAGCG
32260536 CTCC-CACGC-CTGTTTCATGGGTTGGCTTAG
130 C-CCGCACGCTC-GTTTCATGGGTTGGCTTAG
* * * * * * *
32260566 GCATAGGGAATTCATTCCATGTCTAAGCCCCAG-GCAGACCAAGAGTTGTGGTAGCAGGA-CTGG
1 GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCAAGGGTTGCGGCAGCAGGATC-GG
* *
32260629 TAGCACGAAGAGGGGGATCGGGCCGATCCTCGGCTTGCGCATTATGCCTCTTCGGTCGGCTCAGC
65 CAGCACGAAG-GGGGGATCGGGCCGATCCTCGGCTTGCGCATTATGCCTCTTCGGTCGGCTGAGC
* * * * *
32260694 ACCCGCATGCTCATTTCGTGGGTTGACTTATG
129 GCCCGCACGCTCGTTTCATGGGTTGGCTTA-G
* * * * * *
32260726 G-ATACGGATTTCATTCCCA-GTCTAAG-ATCAGACCAGATCAATGGTTGCGGTAGCAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCAGACCAAGGGTTGCGGCAGCAGGATCGG
* * * * * *
32260788 CAGTACGTATGGGGGGATCGGGCCGAT-CTCCGGCTTGCGCATTTTGGCT-TTCCGGCCGGTTGA
65 CAGCACG-AAGGGGGGATCGGGCCGATCCT-CGGCTTGCGCATTATGCCTCTT-CGGTCGGCTGA
* *
32260851 GTGCCCGCACGCTCGTTTCATGGGTTGGTTTAG
127 GCGCCCGCACGCTCGTTTCATGGGTTGGCTTAG
32260884 GCATACGGAGTTCATTCCATGTCTAAGCA
1 GCATACGGAGTTCATTCCATGTCTAAGCA
32260913 TACGGGGTTC
Statistics
Matches: 516, Mismatches: 118, Indels: 58
0.75 0.17 0.08
Matches are distributed among these distances:
156 4 0.01
157 101 0.20
158 76 0.15
159 237 0.46
160 94 0.18
161 4 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCAAGGGTTGCGGCAGCAGGATCGGC
AGCACGAAGGGGGGATCGGGCCGATCCTCGGCTTGCGCATTATGCCTCTTCGGTCGGCTGAGCGC
CCGCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:32262135 original size:158 final size:160
Alignment explanation
Indices: 32261968--32262318 Score: 410
Period size: 159 Copynumber: 2.2 Consensus size: 160
32261958 CGTGCATTGG
* * *
32261968 CTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCAG-CCGGACCGAA-GGTTGTGGTAGCAAG
1 CTTAGGCATACGGAGTTCATTCCCA-GTCTAAGACCAGACCGGACC-AAGGGTTGTGGCAGCAAG
* * * *
32262030 ATCGGCAGCACGC-AGAGGGGGACCGGGCCGATCCTCGGCTTGCGCATTATGCCTTTTCAATCAG
64 ATCGACAGCACGCAAG-GGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCC-TCTCAAGCAG
32262094 -CTCAA-CGCCCGCACGCTCATTTCGTGGG-TTGA
127 ACT-AAGCGCCCGCACGCTCATTTCGTGGGTTTGA
* * * * * *
32262126 CTTATGCATATGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGTGGCAGCAGGAT
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGACCAGACCGGACCAAGGGTTGTGGCAGCAAGAT
* * * **
32262191 CGATAGCACGCAAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCAGACTA
66 CGACAGCACGCAAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCAAGCAGACTA
* * * *
32262256 AGTGCCCGCACTCTCGTTTCGTGGGTTTGG
131 AGCGCCCGCACGCTCATTTCGTGGGTTTGA
32262286 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
32262319 TTTTGAGCCA
Statistics
Matches: 162, Mismatches: 24, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
158 37 0.23
159 90 0.56
160 35 0.22
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (160 bp):
CTTAGGCATACGGAGTTCATTCCCAGTCTAAGACCAGACCGGACCAAGGGTTGTGGCAGCAAGAT
CGACAGCACGCAAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCAAGCAGACTA
AGCGCCCGCACGCTCATTTCGTGGGTTTGA
Found at i:32262228 original size:159 final size:156
Alignment explanation
Indices: 32261816--32262319 Score: 478
Period size: 158 Copynumber: 3.2 Consensus size: 156
32261806 CCCAGTCTAT
* * * * * * *
32261816 GCATACAAAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGGTGCGGTAGTAGGATCGCAG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGTGGTAGCAGGATCGCAG
* * * * * * * * * *
32261881 CACGCAGGGGAGAAT-GAGTCGATCCCTGGCTTGCGCATTCTACCTCTCCGATCGGCTAAACGTC
66 CACGCAGGGG-GGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTTTTCAATCAGCT-AACGCC
* * **
32261945 CGAACGCCCGTTTCGTGCATTGGCTTAG
129 CGCACGCTCGTTTCGTGGGTTGGCTTAG
* * ** *
32261973 GCATAGGGAGTTCATT-CCATGTCTAAGCCCAG-CCGGACCGAA-GGTTGTGGTAGCAAGATCGG
1 GCATACGAAGTTCATTCCCA-GTCTAAGATCAGACCGGACC-AAGGGTTGTGGTAGCAGGATC-G
* * *
32262035 CAGCACGCAGAGGGGGACCGGGCCGATCCTCGGCTTGCGCATTATGCCTTTTCAATCAGCTCAAC
63 CAGCACGCAG-GGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTTTTCAATCAGCT-AAC
* * *
32262100 GCCCGCACGCTCATTTCGTGGGTTGACTTAT
126 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * *
32262131 GCATATGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGTGGCAGCAGGATCGATA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGTGGTAGCAGGATCG-CA
* *** *
32262196 GCACGCAAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCC-TCTCCGGCAGACTAAGTG
65 GCACGC-AGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTTTTCAATCAG-CTAA-CG
*
32262260 CCCGCACTCTCGTTTCGTGGGTTTGGCTTAG
127 CCCGCACGCTCGTTTCGTGGG-TTGGCTTAG
*
32262291 GCATACGGAGTTCATTCCCAGTCTAAGAT
1 GCATACGAAGTTCATTCCCAGTCTAAGAT
32262320 TTTGAGCCAC
Statistics
Matches: 279, Mismatches: 55, Indels: 23
0.78 0.15 0.06
Matches are distributed among these distances:
156 22 0.08
157 37 0.13
158 95 0.34
159 89 0.32
160 36 0.13
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (156 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGTGGTAGCAGGATCGCAG
CACGCAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTTTTCAATCAGCTAACGCCCG
CACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:32263214 original size:158 final size:157
Alignment explanation
Indices: 32262969--32263365 Score: 476
Period size: 158 Copynumber: 2.5 Consensus size: 157
32262959 AACACGCCCG
* * ** * *
32262969 TTTCATGGGTT-AGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCCAGCCGGATTGAAGG
1 TTTCATGGGTTGA-CTTAGGCATACGGAGTTCATTCCCA-ATCTAAG-ATCAGACGGATTGAGGG
** * * * * *
32263032 TTATGGCAGCGGGACCGACCGCACGCAGAGGGGG-ACCGGGCCGATCCTGGCTTACGCATTATGC
63 TTGCGGCAGCAGGATCGACAGCACGCAG-GGGGGTACCGGGCCGATCCCGGCTTACACATTATGC
32263096 CTATCTGGCCGACTCAATGCCCGCACACTCA
127 CTATCTGGCCGACTCAATGCCCGCACACTCA
32263127 TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGAACGGATTGAGGGTT
1 TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAG-ACGGATTGAGGGTT
* * * *
32263192 GCGGCAGCAAGATCGACAGCACGCAGGGGGGTACCGGGCCGATCCCGGCTTGCACATTCTGCCTC
65 GCGGCAGCAGGATCGACAGCACGCAGGGGGGTACCGGGCCGATCCCGGCTTACACATTATGCCTA
* * * * *
32263257 TCTGGCCGGCTGAGTGCCCGCACGCTCG
130 TCTGGCCGACTCAATGCCCGCACACTCA
* * * *
32263285 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCAATTTAAGATCAGACTGGACTGAGGGTT
1 TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGAC-GGATTGAGGGTT
*
32263350 GCAGCAGCAGGATCGA
65 GCGGCAGCAGGATCGA
32263366 GGGTTGCGGT
Statistics
Matches: 206, Mismatches: 28, Indels: 10
0.84 0.11 0.04
Matches are distributed among these distances:
157 10 0.05
158 192 0.93
159 4 0.02
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.23
Consensus pattern (157 bp):
TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACGGATTGAGGGTTG
CGGCAGCAGGATCGACAGCACGCAGGGGGGTACCGGGCCGATCCCGGCTTACACATTATGCCTAT
CTGGCCGACTCAATGCCCGCACACTCA
Found at i:32263548 original size:189 final size:191
Alignment explanation
Indices: 32263195--32263550 Score: 445
Period size: 189 Copynumber: 1.9 Consensus size: 191
32263185 GAGGGTTGCG
* *
32263195 GCAGCAAGATCGACAGCACGCAGGGGGGTACCGGGCCGATCCCGGCTTGCACATTCTGCCTCTCT
1 GCAGCAAGATCGACAGCACGCAGGGGGGTACCGGGCCGATCCCGGCTTACACATTCTGCCTCTCC
* ** * *
32263260 GGCCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCAAT
66 GGCCGACTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGAATACGGAGTTCATTCCCAAT
* * * *
32263325 TTAAGATCAGACTGGACTGAGGGTTGCAGCAGCAGGATCGAGGGTTGCGGTAGCAGGTCCA
131 TTAAGACCAGACCGGACCGAAGGTTGCAGCAGCAGGATCGAGGGTTGCGGTAGCAGGTCCA
* * * *
32263386 GCAGTAAGATCGACAGCACGCA-GGGGG-ATC-GGCTGATCCTCGGCTTACGCATTCTGCCTCTC
1 GCAGCAAGATCGACAGCACGCAGGGGGGTACCGGGCCGATCC-CGGCTTACACATTCTGCCTCTC
* * *
32263448 CGGCCGACTGAGCACCCGTACGCTCGTTTCATGGGTTGGCTTAGGAATATGGAGTTCGTT-CC-A
65 CGGCCGACTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGAATACGGAGTTCATTCCCAA
* **
32263511 TGTCTAAGCCCCA-ACCGGACCGAAGGTTGTGGCAGCAGGA
130 T-T-TAAG-ACCAGACCGGACCGAAGGTTGCAGCAGCAGGA
32263551 CCGACAGCGA
Statistics
Matches: 140, Mismatches: 21, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
187 2 0.01
188 11 0.08
189 99 0.71
190 7 0.05
191 21 0.15
ACGTcount: A:0.19, C:0.27, G:0.32, T:0.21
Consensus pattern (191 bp):
GCAGCAAGATCGACAGCACGCAGGGGGGTACCGGGCCGATCCCGGCTTACACATTCTGCCTCTCC
GGCCGACTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGAATACGGAGTTCATTCCCAAT
TTAAGACCAGACCGGACCGAAGGTTGCAGCAGCAGGATCGAGGGTTGCGGTAGCAGGTCCA
Found at i:32263697 original size:26 final size:26
Alignment explanation
Indices: 32263661--32263713 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
32263651 GTTGACTTAG
32263661 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
32263687 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
32263713 G
1 G
32263714 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:32264040 original size:156 final size:154
Alignment explanation
Indices: 32263687--32264066 Score: 444
Period size: 154 Copynumber: 2.5 Consensus size: 154
32263677 CCCAGTCTAA
* * ** *
32263687 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGTTGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCGGGACCGACA
* * * * * * * *
32263752 GCACGCAGGGGGACCGGTCGATCTTCGGCTTGCGTATTCTGCCTCTCGGTCGGCTGAGCGCCCGC
66 GCACGCAGGGGGACCGGTCAATCCTCGACTTGCGCATTATGCCTCTCGGCCGGCTCAACGCCCGC
*
32263817 ACGCCCATTCGTGGGTTGGCTTAG
131 ACGCCCATTCGTGGGTTGACTTAG
* ** * *
32263841 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCGGACCGAGGGTTGTGGCAGCGGGACCGG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTGCGGCAGCGGGACCGA
*
32263904 CAGCA-G-AGAGGGGATCGGGTCAATCCTCGACTTGCGCATTATGCCTCTTCGGCCGGCTCAACG
64 CAGCACGCAG-GGGGA-CCGGTCAATCCTCGACTTGCGCATTATGCCTC-TCGGCCGGCTCAACG
* *
32263967 CCCGCACGCTCATTTCGTGGGTTGACTTAT
126 CCCGCACGCCCA-TTCGTGGGTTGACTTAG
* * * *
32263997 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCGGGACCGACA
32264062 GCACG
66 GCACG
32264067 ATGGGAGGGA
Statistics
Matches: 186, Mismatches: 31, Indels: 15
0.80 0.13 0.06
Matches are distributed among these distances:
152 2 0.01
153 9 0.05
154 77 0.41
155 28 0.15
156 66 0.35
157 4 0.02
ACGTcount: A:0.19, C:0.28, G:0.32, T:0.21
Consensus pattern (154 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCGGGACCGACA
GCACGCAGGGGGACCGGTCAATCCTCGACTTGCGCATTATGCCTCTCGGCCGGCTCAACGCCCGC
ACGCCCATTCGTGGGTTGACTTAG
Found at i:32264171 original size:159 final size:154
Alignment explanation
Indices: 32263687--32264182 Score: 474
Period size: 159 Copynumber: 3.2 Consensus size: 154
32263677 CCCAGTCTAA
* * **
32263687 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGTTGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGAC
* * * *
32263751 AGCACGCA-GGGGGACCGGTC-GAT-CTTCGGCTTGCGTATTCTGCCTCTCGGTCGGCTGAGCGC
65 AGCACG-AGGGGGGACTGGGCTGATAC--CCGCTTGCGCATTCTGCCTCTCGGTCGGCTGA-CGC
*
32263813 CCGCACGCCCA-TTCGTGGGTTGGCTTAG
126 CCGCACGCTCATTTCGTGGGTTGGCTTAG
* ** * * * *
32263841 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCGGACCGAGGGTTGTGGCAGCGGGACCGGC
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGAC
* * * * *
32263905 AGCA-GAGAGGGGA-TCGGG-TCA-ATCCTCGACTTGCGCATTATGCCTCTTCGGCCGGCTCAAC
65 AGCACGAGGGGGGACT-GGGCTGATA-CC-CG-CTTGCGCATTCTGCCTC-TCGGTCGGCT-GAC
* *
32263966 GCCCGCACGCTCATTTCGTGGGTTGACTTAT
124 GCCCGCACGCTCATTTCGTGGGTTGGCTTAG
* *
32263997 GCATACAGAGTTCATTCCCA-GTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGAC
* *
32264061 AGCACGATGGGAGGGACTGGGCTGATACCCAGCTTACGCATTCTACCTCTCCGGTCGGCTGACTG
65 AGCACGA-GGG-GGGACTGGGCTGATACCC-GCTTGCGCATTCTGCCTCT-CGGTCGGCTGAC-G
* * * *
32264126 CCTGCACACTCGTTTTGTGGGTTGGCTTAG
125 CCCGCACGCTCATTTCGTGGGTTGGCTTAG
32264156 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
32264183 CATACGGAGT
Statistics
Matches: 273, Mismatches: 45, Indels: 43
0.76 0.12 0.12
Matches are distributed among these distances:
152 2 0.01
153 13 0.05
154 67 0.25
155 27 0.10
156 67 0.25
157 5 0.02
158 8 0.03
159 77 0.28
160 6 0.02
161 1 0.00
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.23
Consensus pattern (154 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACA
GCACGAGGGGGGACTGGGCTGATACCCGCTTGCGCATTCTGCCTCTCGGTCGGCTGACGCCCGCA
CGCTCATTTCGTGGGTTGGCTTAG
Found at i:32264192 original size:26 final size:26
Alignment explanation
Indices: 32264156--32264208 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
32264146 GTTGGCTTAG
32264156 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
32264182 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
32264208 G
1 G
32264209 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:32264580 original size:26 final size:25
Alignment explanation
Indices: 32264542--32264593 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
32264532 GTTGAGTTAG
32264542 GCATACGAGTTCATCCCCAGTCTAA
1 GCATACGAGTTCATCCCCAGTCTAA
*
32264567 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATAC-GAGTTCATCCCCAGTCTAA
32264593 G
1 G
32264594 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 6 0.24
26 19 0.76
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (25 bp):
GCATACGAGTTCATCCCCAGTCTAA
Found at i:32272306 original size:26 final size:26
Alignment explanation
Indices: 32272277--32272329 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32272267 CTGATCCGAT
*
32272277 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
32272303 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
32272329 C
1 C
32272330 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:32272804 original size:159 final size:157
Alignment explanation
Indices: 32272303--32272797 Score: 505
Period size: 159 Copynumber: 3.1 Consensus size: 157
32272293 ACTCTGTATG
* * * * *
32272303 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGGGTGTGGGCGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGCGTGCGGGCACTCAGC
* * *
32272368 CGA-CGGAAAGGCAGAATGCGCAAGCCGAGGACCGTCCCGATCCCCCCTGCGTGCTGTCGATCCT
66 CGACCGGAGAGGCAGAATGCGCAAGCCG-GGATCGACCCGATCCCCCCTGCGTGCTGTCGATCCT
* * *
32272432 GCTACCGTAACCCTCGGTCTGGTCCGAT
130 GCTACCGCAACCCTTGGTCTGGTCTGAT
* * * * *
32272460 CTTAAAC-TGGGAATGAACTCCGTATGCCTGAGTCAACCCAAAAAACGAGCGTGCGGGCACTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGCGTGCGGGCACTCAG
* * * * * * * * * *
32272524 CCGGCTGAAGGGGCATAATGTGCAAGTCGGGATCGACTCGGTCCCCCCTCTGCGTGCTGTCGGTC
65 CCGACCGGAGAGGCAGAATGCGCAAGCCGGGATCGACCCGAT-CCCCC-CTGCGTGCTGTCGATC
* * * * **
32272589 CCGTTGCCACAA-CCTTCGGTCTGG-CTGGGG
128 CTGCTACCGCAACCCTT-GGTCTGGTCT-GAT
* * * *
32272619 CATAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTTGGGGGCACTCAG
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGCG-TGCGGGCACTCAG
* * *
32272684 CCGACCGGAGAGGCAGAAAGCGCAAGCCAGGGATCGGCCCGATCCCCCCTGCGTGCTATCGATCC
65 CCGACCGGAGAGGCAGAATGCGCAAGCC-GGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCC
* *
32272749 TACTACCGCAACCCTTGGTCCGGTCTGAT
129 TGCTACCGCAACCCTTGGTCTGGTCTGAT
32272778 CTTAGAC-TGGGAATGAACTC
1 CTTAGACAT-GGAATGAACTC
32272798 TATATGCTTA
Statistics
Matches: 263, Mismatches: 63, Indels: 22
0.76 0.18 0.06
Matches are distributed among these distances:
156 1 0.00
157 64 0.24
158 27 0.10
159 117 0.44
160 43 0.16
161 11 0.04
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.18
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGCGTGCGGGCACTCAGC
CGACCGGAGAGGCAGAATGCGCAAGCCGGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCCTG
CTACCGCAACCCTTGGTCTGGTCTGAT
Found at i:32272814 original size:26 final size:27
Alignment explanation
Indices: 32272778--32272831 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 27
32272768 CCGGTCTGAT
32272778 CTTAGACT-GGGAATGAACTCTATATG
1 CTTAGACTGGGGAATGAACTCTATATG
* *
32272804 CTTAGACTGGGGGATGAACTCTGTATG
1 CTTAGACTGGGGAATGAACTCTATATG
32272831 C
1 C
32272832 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 8 0.32
27 17 0.68
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.30
Consensus pattern (27 bp):
CTTAGACTGGGGAATGAACTCTATATG
Found at i:32272999 original size:26 final size:26
Alignment explanation
Indices: 32272963--32273016 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
32272953 TCTAGCTGGG
* *
32272963 GCTTAGACATGGAATGAACTCCGTAT
1 GCTTAGACATGAAATAAACTCCGTAT
32272989 GCTTAGACATGAAATAAACTCCGTAT
1 GCTTAGACATGAAATAAACTCCGTAT
32273015 GC
1 GC
32273017 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.26
Consensus pattern (26 bp):
GCTTAGACATGAAATAAACTCCGTAT
Found at i:32273018 original size:185 final size:184
Alignment explanation
Indices: 32272621--32273175 Score: 616
Period size: 185 Copynumber: 3.0 Consensus size: 184
32272611 GGCTGGGGCA
* *
32272621 TAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTTGGGGGCACTCAGCC
1 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCG-TGCGGGCACTCAGCC
* * *
32272686 GACCGGAGAGGCAGAAAGCGCAAGCCAGGGATCGGCCCGATCCCCCCTGCGTGCTATCGATCCTA
65 GATCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCCCTACGTGCTATCGATCCTA
* * * * *
32272751 CTACCGCAACCCTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTATATGCT
130 CTACCACAACCCTCGGTCCAGTCTGAGCTTAGACTGGGAATGAACTCCATATGCT
* * * * * *
32272806 TAGAC-TGGGGGATGAACTCTGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTCAGC
1 TAGACAT--GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGC
* * ** *
32272870 CGATCGGAGAGGCAGAATGCGTAAGCCAGGGATTGGCCCGATCCCTTTCTACGTGCT-GCTGATC
64 CGATCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCC-CCCTACGTGCTATC-GATC
* * * * * *
32272934 TTGCTGCCACAACCCTCGGTCTAG-CTGGGGCTTAGACAT-GGAATGAACTCCGTATGCT
127 CTACTACCACAACCCTCGGTCCAGTCT-GAGCTTAGAC-TGGGAATGAACTCCATATGCT
* * * *
32272992 TAGACATGAAATAAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCACTCAGCCA
1 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCG
* ** * *
32273057 ATCGGAGAGGGAGAATGCGCAAGCC-GAGGATCTACCCGATCTCCCCCTACGTTCTATCAATCCT
66 ATCGGAGAGGCAGAATGCGCAAGCCAG-GGATCGGCCCGATC-CCCCCTACGTGCTATCGATCCT
* * * * * *
32273121 GCTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGC
129 ACTACCACAACCCTCGGTCCAGTCTGAGCTTAGACTGGGAATGAACTCCATATGC
32273176 ATAAGTCAAC
Statistics
Matches: 304, Mismatches: 54, Indels: 24
0.80 0.14 0.06
Matches are distributed among these distances:
184 3 0.01
185 199 0.65
186 100 0.33
187 2 0.01
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (184 bp):
TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCG
ATCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCCCTACGTGCTATCGATCCTAC
TACCACAACCCTCGGTCCAGTCTGAGCTTAGACTGGGAATGAACTCCATATGCT
Found at i:32273291 original size:159 final size:159
Alignment explanation
Indices: 32272989--32273415 Score: 450
Period size: 159 Copynumber: 2.7 Consensus size: 159
32272979 AACTCCGTAT
* * * * *
32272989 GCTTAGACATGAAATAAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
* * * * ** * *
32273054 CCAATCGGAGAGGGAGAATGCGCAAGCCGAGGATCTACCCGATCTCCCCCTACGTTCTATCAATC
66 CCGATCGAAGAGGAAGAATGCGCAAGCCGGGGATCGGCCCGATCTCCCCCTACATGCTATCAATC
* *
32273119 CTGCTACCGCAACCCTCGGTCCGGTCT-GA
131 CCGCTACCACAACCCTCGGTCCGG-CTGGA
* * * * * *
32273148 TCTTAGAC-TAGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTACAGGCGTTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCA
* * * *
32273212 GTCGATCGAAGAGGCATAATGCGCAAGCCGGGGATCGGCCC-AGTC-CCCCTCTACATGCTATCG
65 GCCGATCGAAGAGGAAGAATGCGCAAGCCGGGGATCGGCCCGA-TCTCCCC-CTACATGCTATCA
* * * * *
32273275 GTCCCGCTGCCACAACCCTTGGTCTGGCTGGG
128 ATCCCGCTACCACAACCCTCGGTCCGGCTGGA
* *
32273307 GCTTAGTCATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACG-GACGTACGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAG-CGTACGGGCGCTCA
** * *
32273371 GCCGGCCGAAGAGGAAGAATGCGCAAGCTGGAGATCGGCCCGATC
65 GCCGATCGAAGAGGAAGAATGCGCAAGCCGGGGATCGGCCCGATC
32273416 CTTCTTGCGT
Statistics
Matches: 217, Mismatches: 44, Indels: 14
0.79 0.16 0.05
Matches are distributed among these distances:
158 9 0.04
159 206 0.95
160 2 0.01
ACGTcount: A:0.26, C:0.30, G:0.26, T:0.18
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
CCGATCGAAGAGGAAGAATGCGCAAGCCGGGGATCGGCCCGATCTCCCCCTACATGCTATCAATC
CCGCTACCACAACCCTCGGTCCGGCTGGA
Found at i:32273517 original size:26 final size:26
Alignment explanation
Indices: 32273466--32273518 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
32273456 TTGGTATGAT
* **
32273466 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
32273492 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
32273518 C
1 C
32273519 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:32273934 original size:158 final size:158
Alignment explanation
Indices: 32273636--32274037 Score: 357
Period size: 158 Copynumber: 2.5 Consensus size: 158
32273626 TGTCGATCTC
* * *
32273636 GCTGTCGGTCCTGCTACCACAACCCTCGGTCCGACTTGGGCTTAGACATGGAATGAACTTCGTAT
1 GCTGTCGATCCTGCTACCACAACCCTCGGTCCGACTCGAGCTTAGACATGGAATGAACTTCGTAT
* * *
32273701 GCCTAAGCCAACCCACAAAACGAGCGTGAGGGCGCTCAACCGACTGGAGAGGCAGAATGCGCAAG
66 GCATAAGCCAACCCACAAAACGAGCGTGAGGGCGCTCAACCGACCGAAGAGGCAGAATGCGCAAG
*
32273766 CCGGGTATCAGCTCGATCACCCCTGCGT
131 CAGGGTATCAGCTCGATCACCCCTGCGT
* *
32273794 GCTGTCGATCCTGCTA-CAGCAACCCTCGGTCC-AGTCCGATCTTAGAC-TAGGAATGAACTTCG
1 GCTGTCGATCCTGCTACCA-CAACCCTCGGTCCGACT-CGAGCTTAGACAT-GGAATGAACTTCG
* * ** * * * * * *
32273856 TATGCATAAGTCAATCCATGAAACGAGCGTGTGGGGGTTGAGCC-AGCCGAAGAGGCATAATGCG
63 TATGCATAAGCCAACCCACAAAACGAGCGTGAGGGCGCTCAACCGA-CCGAAGAGGCAGAATGCG
* * *
32273920 TAAGTCAGGG-ATCAGCCCAATC-CCCCAGTGCGT
127 CAAG-CAGGGTATCAGCTCGATCACCCC--TGCGT
* * * * * * * ** * * ** *
32273953 GCTGCCGGTCCCGCAACCACAGCCTTGGGTCCGGTTAGGGCTTAGACATGGAATGAACACCCTAT
1 GCTGTCGATCCTGCTACCACAACCCTCGGTCCGACTCGAGCTTAGACATGGAATGAACTTCGTAT
* *
32274018 GCCTAAGCTAACCCACAAAA
66 GCATAAGCCAACCCACAAAA
32274038 TTGGCATGCG
Statistics
Matches: 191, Mismatches: 43, Indels: 19
0.75 0.17 0.08
Matches are distributed among these distances:
157 10 0.05
158 111 0.58
159 66 0.35
160 4 0.02
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.19
Consensus pattern (158 bp):
GCTGTCGATCCTGCTACCACAACCCTCGGTCCGACTCGAGCTTAGACATGGAATGAACTTCGTAT
GCATAAGCCAACCCACAAAACGAGCGTGAGGGCGCTCAACCGACCGAAGAGGCAGAATGCGCAAG
CAGGGTATCAGCTCGATCACCCCTGCGT
Found at i:32273964 original size:685 final size:670
Alignment explanation
Indices: 32272302--32274520 Score: 1995
Period size: 685 Copynumber: 3.3 Consensus size: 670
32272292 AACTCTGTAT
* * *
32272302 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGGGTGTGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGAGGGCGCTCAG
* * *
32272367 TCGAC-GGAAAGGCAGAATGCGCAAGCCGAGGA-CCGTCCCGATCCCCCCTGCGTGCTGTCGATC
66 CCGACTGGAGAGGCAGAATGCGCAAGCCGAGGATCAG-CCCGATCCCCCCTGCGTGCTGTCGATC
* * * * * *
32272430 CTGCTACCGTAACCCTCGGTCTGGTCCGATCTTAAACTGGGAATGAACTCCGTATGCCTGAGTCA
130 CTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCATAAGTCA
* ** * * *
32272495 ACCCAAAAAACGAGCGTGCGGGCACTGAGCCGGCTGAAGGGGCATAATGTGCAAGTCGGGATCGA
195 ACCCAAGAAACGAGCGTGCGGGCGTTGAGCC-GCCGAAGAGGCATAATGCGCAAGTCGGGATCG-
* * * *
32272560 CTCGGTCCCCCCTCTGCGTGCTGTCGGTCCCGTTGCCACAACCTTCGGTCTGGCTGGGGCATAGA
258 CCCAGT-CCCCCTCTGCGTGCTGTCGGTCCCGCTGCCACAACCTTCGGTCTGGCTGGGGCTTAGA
* * * *
32272625 CATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAC-GAGCGTTGGGGGCACTCAGCCGAC
322 CATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGA-CG-TGCGGGCGCTCAGCCGGC
* * * *
32272689 CGGAGAGGCAGAAAGCGCAAGCCAGGGATCGGCCCGATCCCCCCTGCGTGCTATCGATCCTACTA
385 C-GAGAGGAAGAATGCGCAAG-CAGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCCTACTG
*
32272754 CCGCAACCCTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTATATGCTTAGACTGGGGGAT
448 CCGCAACCCTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACT-GGGGAT
* ** * *
32272819 GAACTCTGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTCAGCCGATCGGAGAGGCA
512 GAACTCCGTATGCCTAAGTCAACCCACAAAATGAACGTGCGGGCACTCAGCCGATCGGAGAGGCA
* ** * ** *
32272884 GAATGCGTAAGCCAGGGATTGGCCCGATCCCTTTCTACGTGCTGCTGATCTTGCTGCCACAACCC
577 GAATGCGCAAGCCAGGGATCAGCCCAATCCCCCTCTACGTGCTGCTGATCTCGCTG--------C
** ** * *
32272949 TCGGTCTAGCTGGGGCTTAGACATGGAATGAACTCCGTAT
634 TCGGTCTAGCT-GACCACAGACATGGAACGAACT-C-TAG
* * * * *
32272989 GCTTAGACATGAAATAAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGAGGGCGCTCAG
* * * * * *
32273054 CC-AATCGGAGAGGGAGAATGCGCAAGCCGAGGATCTA-CCCGATCTCCCCCTACGTTCTATCAA
66 CCGACT-GGAGAGGCAGAATGCGCAAGCCGAGGATC-AGCCCGATC-CCCCCTGCGTGCTGTCGA
*
32273117 TCCTGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCATAAGT
128 TCCTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCATAAGT
* * * * * *
32273182 CAACCCACGAAACGAGCGTACAGGCGTTGAGTCGATCGAAGAGGCATAATGCGCAAGCCGGGGAT
193 CAACCCAAGAAACGAGCGTGCGGGCGTTGAGCCG-CCGAAGAGGCATAATGCGCAAGTC-GGGAT
* * *
32273247 CGGCCCAGTCCCCCTCTACATGCTATCGGTCCCGCTGCCACAACCCTT-GGTCTGGCTGGGGCTT
256 C-GCCCAGTCCCCCTCTGCGTGCTGTCGGTCCCGCTGCCACAA-CCTTCGGTCTGGCTGGGGCTT
* * *
32273311 AGTCATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGGACGTACGGGCGCTCAGCCGG
319 AGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGACGTGCGGGCGCTCAGCCGG
* ** * * *
32273376 CCGAAGAGGAAGAATGCGCAAGCTGGAGATCGGCCCGATCCTTCTTGCGTGCTGTAGATCCTATT
384 CCG-AGAGGAAGAATGCGCAAGCAGG-GATCGGCCCGATCCCCCCTGCGTGCTGTCGATCCTACT
* * ** * *
32273441 GCTGCAGCCCTTGGTTTGGTATGATCTTAGATTGGGAATGAACTCTGTATGCTTAGACTGGGGAT
447 GCCGCAACCCTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGAT
* *
32273506 GAACTCCATATGCCTAAGTCAACCCACAAAATGAACGTTCGGGCACTCAACCGACCGGAAAGGCC
512 GAACTCCGTATGCCTAAGTCAACCCACAAAATGAACGTGCGGGCACTC-A--G-CC------G--
* * ** * ** *
32273571 AGTCGGAGAGGCATAATGTGCAAGCTGGGGATCAGCCTAATCCCCCTCTGTGTGTTG-TCGATCT
565 A-TCGGAGAGGCAGAATGCGCAAGCCAGGGATCAGCCCAATCCCCCTCTACGTGCTGCT-GATCT
* ** *
32273635 CGCTG-TCGGTCCT-GCT-ACCACA-ACCCTCGGTCCG-ACT-TGG
628 CGCTGCTCGGT-CTAGCTGACCACAGA-CAT-GGAACGAACTCTAG
* * *
32273675 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACAAAACGAGCGTGAGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGAGGGCGCTCAG
* *
32273740 CCGACTGGAGAGGCAGAATGCGCAAGCCG-GGTATCAGCTCGATCACCCCTGCGTGCTGTCGATC
66 CCGACTGGAGAGGCAGAATGCGCAAGCCGAGG-ATCAGCCCGATCCCCCCTGCGTGCTGTCGATC
* * *
32273804 CTGCTACAGCAACCCTCGGTCCAGTCCGATCTTAGACTAGGAATGAACTTCGTATGCATAAGTCA
130 CTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCATAAGTCA
* * * * *
32273869 ATCCATGAAACGAGCGTGTGGGGGTTGAGCCAGCCGAAGAGGCATAATGCGTAAGTCAGGGATCA
195 ACCCAAGAAACGAGCGTGCGGGCGTTGAGCC-GCCGAAGAGGCATAATGCGCAAGTC-GGGATC-
* ** * ** * * * * *
32273934 GCCCAATCCCCCAGTGCGTGCTGCCGGTCCCGCAACCACAGCCTTGGGTCCGGTTAGGGCTTAGA
257 GCCCAGTCCCCCTCTGCGTGCTGTCGGTCCCGCTGCCACAACCTTCGGTCTGGCTGGGGCTTAGA
* * * * * * *
32273999 CATGGAATGAACACCCTATGCCTAAGCTAACCCACAAAATTGG-CATGCGGGCGCTCGGTCGGTC
322 CATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAA-CGGACGTGCGGGCGCTCAGCCGGCC
* * * * * *
32274063 -AGAGAGACAGAATGCGCAAGCCGGGGATCGGCTCGATCCCCCCTGTGTGTTGCCGCTCCTACTG
386 GAGAG-GA-AGAATGCGCAAG-CAGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCCTACTG
* * * * * *
32274127 CCGCAACCTTTGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGATTGGGGATG
448 CCGCAACCCTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATG
* ** * ** * ** ** *
32274192 AACTCCGTATGCCCAAGTCAACCCATGAAAGGAACGTGCGGGTGCTCAGTCGGCCAAAGAGGCAT
513 AACTCCGTATGCCTAAGTCAACCCACAAAATGAACGTGCGGGCACTCAGCCGATCGGAGAGGCAG
* * * * * *** *
32274257 AATGCACAAGTCGGGGATCGGTCTGGTCCCCCTCTAC--G-TGCTG---TCG--G-TC---C-GG
578 AATGCGCAAGCCAGGGATCAGCCCAATCCCCCTCTACGTGCTGCTGATCTCGCTGCTCGGTCTAG
* ** **
32274309 CTG-CCACA-ACCCTCGGTCCG-ACT-GGG
643 CTGACCACAGA-CAT-GGAACGAACTCTAG
* * * * * * *
32274335 GCTTAGACATGGAATGAACTCCCTATGCCGAAGCCAACCCACGAAACGGGCATGCGAGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGAGGGCGCTCAG
* * * **
32274400 CCGACCGGAGAGGCAGAATGCGCAAGCCGAGGATC-GACCCGGTCCCCCCTCCGTGCTACCGATC
66 CCGACTGGAGAGGCAGAATGCGCAAGCCGAGGATCAG-CCCGATCCCCCCTGCGTGCTGTCGATC
* ** * * * * *
32274464 CTACTGTCGCAACCCTCGGACCGGCCCGATCTTAGGCTGGGAATGAACTCTGTATGC
130 CTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGC
32274521 TTAGACTGGG
Statistics
Matches: 1262, Mismatches: 227, Indels: 113
0.79 0.14 0.07
Matches are distributed among these distances:
659 1 0.00
660 179 0.14
661 2 0.00
664 3 0.00
666 3 0.00
669 3 0.00
670 2 0.00
672 36 0.03
675 1 0.00
681 1 0.00
682 1 0.00
683 4 0.00
684 7 0.01
685 361 0.29
686 98 0.08
687 113 0.09
688 149 0.12
689 212 0.17
690 20 0.02
691 11 0.01
692 2 0.00
697 1 0.00
699 2 0.00
700 50 0.04
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (670 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGAGGGCGCTCAG
CCGACTGGAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCGATCCCCCCTGCGTGCTGTCGATCC
TGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCATAAGTCAA
CCCAAGAAACGAGCGTGCGGGCGTTGAGCCGCCGAAGAGGCATAATGCGCAAGTCGGGATCGCCC
AGTCCCCCTCTGCGTGCTGTCGGTCCCGCTGCCACAACCTTCGGTCTGGCTGGGGCTTAGACATG
GAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGACGTGCGGGCGCTCAGCCGGCCGAGAG
GAAGAATGCGCAAGCAGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCCTACTGCCGCAACC
CTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGT
ATGCCTAAGTCAACCCACAAAATGAACGTGCGGGCACTCAGCCGATCGGAGAGGCAGAATGCGCA
AGCCAGGGATCAGCCCAATCCCCCTCTACGTGCTGCTGATCTCGCTGCTCGGTCTAGCTGACCAC
AGACATGGAACGAACTCTAG
Found at i:32274180 original size:26 final size:26
Alignment explanation
Indices: 32274151--32274203 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
32274141 CCGATCCGAT
32274151 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
32274177 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
32274203 C
1 C
32274204 CCAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:32274530 original size:26 final size:26
Alignment explanation
Indices: 32274494--32274544 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
32274484 CCGGCCCGAT
* *
32274494 CTTAGGCTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
32274520 CTTAGACTGGGGATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
32274545 ACCTAAGTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.24, C:0.18, G:0.29, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:32274617 original size:343 final size:343
Alignment explanation
Indices: 32273990--32274617 Score: 812
Period size: 343 Copynumber: 1.8 Consensus size: 343
32273980 GGTCCGGTTA
* * ** *
32273990 GGGCTTAGACATGGAATGAACACCCTATGCCTAAGCTAACCCACAAAATTGGCATGCGGGCGCTC
1 GGGCTTAGACATGGAATGAACACCCTATGCCGAAGCCAACCCACAAAACGGGCATGCGAGCGCTC
* * ** * * * ** * * *
32274055 GGTCGGTCAGAGAGACAGAATGCGCAAGCCGGGGATCGGCTCGATCCCCCCTGTGTGTTGCCGCT
66 AGCCGACCAGAGAGACAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCCTCCGTGCTACCGAT
** * *
32274120 CCTACTGCCGCAACCTTTGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGATT
131 CCTACTGCCGCAACCTCGGATCCGACCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
* * * * * **
32274185 GGGGATGAACTCCGTATGCCCAAGTCAACCCATGAAAGGAACGTGCGGGTGCTCAGTCGGCCAAA
196 GGGGATGAACTCCGTATACCCAAGTCAACCCACGAAAGCAACGTGCGGGCGCTCAGCCCACCAAA
**
32274250 GAGGCATAATGCACAAGTCGGGGATCGGTCTGGTCCCCCTCTACGTGCTGTCGGTCCGGCTGCCA
261 GAGGCATAATGCACAAACCGGGGATCGGTCTGGTCCCCCTCTACGTGCTGTCGGTCCGGCTGCCA
32274315 CAACCCTCGGTCCGACTG
326 CAACCCTCGGTCCGACTG
* * *
32274333 GGGCTTAGACATGGAATGAACTCCCTATGCCGAAGCCAACCCACGAAACGGGCATGCGAGTGCTC
1 GGGCTTAGACATGGAATGAACACCCTATGCCGAAGCCAACCCACAAAACGGGCATGCGAGCGCTC
* * *
32274398 AGCCGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCCCCCTCCGTGCTACCGAT
66 AGCCGACCAGAGAGACAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCCTCCGTGCTACCGAT
* * * *
32274463 CCTACTGTCGCAACCCTCGGA-CCGGCCCGATCTTAGGCTGGGAATGAACTCTGTATGCTTAGAC
131 CCTACTGCCGCAA-CCTCGGATCCGACCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
* *
32274527 TGGGGATGAACTCCGTATACCTAAGTCAACCCACGAAA-CAAGCGTGTGGGCGCTCAGCCCACCA
195 TGGGGATGAACTCCGTATACCCAAGTCAACCCACGAAAGCAA-CGTGCGGGCGCTCAGCCCACCA
* *
32274591 GAGAGGCA-AGATGCGCAAACCGGGGAT
259 AAGAGGCATA-ATGCACAAACCGGGGAT
32274618 TGAATTAGTG
Statistics
Matches: 238, Mismatches: 44, Indels: 6
0.83 0.15 0.02
Matches are distributed among these distances:
342 3 0.01
343 230 0.97
344 5 0.02
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.18
Consensus pattern (343 bp):
GGGCTTAGACATGGAATGAACACCCTATGCCGAAGCCAACCCACAAAACGGGCATGCGAGCGCTC
AGCCGACCAGAGAGACAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCCTCCGTGCTACCGAT
CCTACTGCCGCAACCTCGGATCCGACCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
GGGGATGAACTCCGTATACCCAAGTCAACCCACGAAAGCAACGTGCGGGCGCTCAGCCCACCAAA
GAGGCATAATGCACAAACCGGGGATCGGTCTGGTCCCCCTCTACGTGCTGTCGGTCCGGCTGCCA
CAACCCTCGGTCCGACTG
Found at i:32275151 original size:26 final size:26
Alignment explanation
Indices: 32275113--32275165 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
32275103 GGCTCAAAAT
*
32275113 CTTAGGCTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
32275139 CTTAGACTTGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
32275165 C
1 C
32275166 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:32276338 original size:158 final size:156
Alignment explanation
Indices: 32275809--32276347 Score: 408
Period size: 158 Copynumber: 3.4 Consensus size: 156
32275799 CTGACTGGGG
* * * * * *** *
32275809 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAAGCAACGAAACGAGTGTATGGGCGCTCAG
1 CTTAGA-ATGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCAGGCACTCAG
* * * * * * * *
32275873 TCGGCTAGAGAGGCAGAATGC-ACAAGTCGGGGATCAGCCCGGTCCCCTCTACGTTCTGTCAATC
65 CCGGATGGAGAGGCAGAATGCGA-AACT-GGGGATCGGCCCGGTCCCCCCTACGTGCTGTCGATC
*
32275937 CTACTACCGTAACCCTCGATCTGGTCCACT
128 CTACTACCGTAACCCTCGATCTGGTCGA-T
* * * * * *
32275967 CTTAGACTGGGAATGAACTTCGTATGCTTAAGTCAACCCACGAAACGAGCGTGCGGGCACTGAGC
1 CTTAGAATGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCAGGCACTCAGC
* * * * * * * * ** *
32276032 C-GATCGAAGAAGCACAATACGCAAGCTGGGGATAGGCTCGGTCCCCCTCTGCGTGCTACCGGTC
66 CGGAT-GGAGAGGCAGAATGCG-AAACTGGGGATCGGCCCGGTCCCCC-CTACGTGCTGTCGATC
** * ** * * **
32276096 CCGCTGCCAAAACCCTCGATCTGACTGGGG
128 CTACTACCGTAACCCTCGATCTG-GTCGAT
* *
32276126 CTTAGACAT-GGAATGAACTCCCTATGCCTAAG-CAAACCCACGAAAC-AGGCGTGCAGGCACTC
1 CTTAGA-ATGGGAATGAACTCCGTATGCCTAAGTC-AACCCACAAAACGA-GCGTGCAGGCACTC
* *
32276188 AGCCGGATGGAGAGGCAGAATGCGTAAACTGGGGATCGGCCCGATCCCCCCTACATGCTGTCGAT
63 AGCCGGATGGAGAGGCAGAATGCG-AAACTGGGGATCGGCCCGGTCCCCCCTACGTGCTGTCGAT
*
32276253 CCTACTACCGTAACCCTTGAT-TCGGTTCGAT
127 CCTACTACCGTAACCCTCGATCT-GG-TCGAT
* * * * * *
32276284 CTTAGATTGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGTGTGCAAGCGCTCAG
1 CTTAGAATGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCAGGCACTCAG
32276348 TCGGCCAGTC
Statistics
Matches: 288, Mismatches: 78, Indels: 30
0.73 0.20 0.08
Matches are distributed among these distances:
157 5 0.02
158 158 0.55
159 119 0.41
160 6 0.02
ACGTcount: A:0.26, C:0.29, G:0.26, T:0.20
Consensus pattern (156 bp):
CTTAGAATGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCAGGCACTCAGC
CGGATGGAGAGGCAGAATGCGAAACTGGGGATCGGCCCGGTCCCCCCTACGTGCTGTCGATCCTA
CTACCGTAACCCTCGATCTGGTCGAT
Found at i:32276682 original size:26 final size:26
Alignment explanation
Indices: 32276630--32276682 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
32276620 CCGATTCAAT
* *
32276630 CTTAGACTTGGAATGAACTCTGGATG
1 CTTAGACATGGAATGAACTCCGGATG
*
32276656 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGGATG
32276682 C
1 C
32276683 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGGATG
Found at i:32277148 original size:26 final size:24
Alignment explanation
Indices: 32277111--32277160 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 24
32277101 CCTCGGTCCG
32277111 GTCTGATCTTAGACTGGGAATGAA
1 GTCTGATCTTAGACTGGGAATGAA
*
32277135 GTCTGGATGCTTAGACTGGGGATGAA
1 GTCT-GAT-CTTAGACTGGGAATGAA
32277161 CTCCGTATGC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 4 0.17
25 3 0.13
26 16 0.70
ACGTcount: A:0.26, C:0.12, G:0.34, T:0.28
Consensus pattern (24 bp):
GTCTGATCTTAGACTGGGAATGAA
Found at i:32277170 original size:26 final size:26
Alignment explanation
Indices: 32277118--32277173 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 26
32277108 CCGGTCTGAT
* *
32277118 CTTAGACTGGGAATGAAGTCTGGATG
1 CTTAGACTGGGAATGAACTCCGGATG
* *
32277144 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGGATG
32277170 CTTA
1 CTTA
32277174 AGTCAACCCG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.16, G:0.30, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGGATG
Found at i:32277527 original size:26 final size:26
Alignment explanation
Indices: 32277498--32277550 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32277488 CCGGTTCGAT
32277498 CTTAGAC-TGGGAATGAACTCCGCATG
1 CTTAGACAT-GGAATGAACTCCGCATG
*
32277524 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGCATG
32277550 C
1 C
32277551 CCAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGCATG
Found at i:32278014 original size:158 final size:159
Alignment explanation
Indices: 32277644--32278014 Score: 401
Period size: 159 Copynumber: 2.3 Consensus size: 159
32277634 ATTGATCTTG
* * * * * * * *
32277644 CTGCTGCAACCCTCGATCCGATCTGATCTCAGACTGGGAATGAACTCTGTATGCCTATGTCAACG
1 CTGCCGCAACCCTTGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * * * * * * *
32277709 CACGAAATGAGCGTGCGGGCGCTGAGCTAGTCGGAGAGGCATAATGCTCAAGCCAGGGATCGGCC
66 CACGAAACGAGCGTGCGGGCGCTCAACTAGCCGGAGAGGCAGAATGCGCAAGCCAAGGATCGACC
* * *
32277774 CAGTCCCTCTCTGCTTGCTACCAGTCTCA
131 CAGTCCCTCCCTGCGTGCTACCAATCTCA
* * * *
32277803 CTGCCACAACCCTTGGTCCG-GCTCGATCTTAGACAT-GGAATTAACTCCCTATGCCTAAGCCAA
1 CTGCCGCAACCCTTGGTCCGATCT-GATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
32277866 CCCATGAAACGGGCGTGCGGGTGCTCAACTGGCCGGAGAGGTAGAATGCGCAAGCCAAGGATCGA
64 CCCACGAAACGAGCGTGCGGGCGCTCAACTAGCCGGAGAGGCAGAATGCGCAAGCCAAGGATCGA
* *
32277931 CCC-GATCCC-CCCTGCGTGTTCCCAATACT-A
129 CCCAG-TCCCTCCCTGCGTGCTACCAAT-CTCA
32277961 CTGCCGCAACCCTTGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGC
1 CTGCCGCAACCCTTGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGC
32278015 TTAGACTTGG
Statistics
Matches: 172, Mismatches: 34, Indels: 13
0.79 0.16 0.06
Matches are distributed among these distances:
157 1 0.01
158 61 0.35
159 109 0.63
160 1 0.01
ACGTcount: A:0.23, C:0.31, G:0.25, T:0.21
Consensus pattern (159 bp):
CTGCCGCAACCCTTGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
CACGAAACGAGCGTGCGGGCGCTCAACTAGCCGGAGAGGCAGAATGCGCAAGCCAAGGATCGACC
CAGTCCCTCCCTGCGTGCTACCAATCTCA
Found at i:32278017 original size:26 final size:26
Alignment explanation
Indices: 32277988--32278040 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32277978 CCGATCTGAT
*
32277988 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACTTGGG-ATGAACTCCATATG
32278014 CTTAGACTTGGGATGAACTCCATATG
1 CTTAGACTTGGGATGAACTCCATATG
32278040 C
1 C
32278041 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTTGGGATGAACTCCATATG
Found at i:32278915 original size:25 final size:26
Alignment explanation
Indices: 32278870--32278918 Score: 82
Period size: 25 Copynumber: 1.9 Consensus size: 26
32278860 CCGGTCTGAT
32278870 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
*
32278896 CTTAGACTG-GGATGAACTCCGTA
1 CTTAGACTGAGAATGAACTCCGTA
32278919 CGCCTAAGTC
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 13 0.59
26 9 0.41
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:32280463 original size:26 final size:26
Alignment explanation
Indices: 32280434--32280486 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
32280424 CCGATTTGGT
* *
32280434 CTTAGACTGGGAATGTACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
32280460 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
32280486 C
1 C
32280487 GTAACTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:32281977 original size:26 final size:26
Alignment explanation
Indices: 32281940--32281991 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
32281930 GCTCAAAATA
32281940 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
32281966 TTAGACAT-GGAATGAACTCCGTATGC
1 TTAGAC-TGGGAATGAACTCCGTATGC
32281992 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:32282259 original size:159 final size:159
Alignment explanation
Indices: 32281965--32282323 Score: 391
Period size: 159 Copynumber: 2.3 Consensus size: 159
32281955 ACTCCGTATG
* * * *
32281965 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTGAGC
1 CTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACAAAACGAGCGTCCGGGCACTAAGC
* * * * *
32282030 CAATAGGAGAGGCAGAATGTGCAAGTCGGGGATCGACCCGATCCTCCCCTGCGTGCTATCGATCC
66 CAACAGAAGAGGCAGAATGCGCAAGTCGAGGATCGACCCGATCCTCCCCTGCATGCTATCGATCC
* *
32282095 TGCTGCCGCAACCCTCGGTCCGGTCTGAT
131 CGCTGCCACAACCCTCGGTCCGGTCTGAT
* ** ** *
32282124 CTTAGAC-TGGGAATGAACTTCGTATGCATAAGTTAACCCATGAAACGAGTGTCCGGGCACTAAG
1 CTTAGACAT-GGAATGAACTCCGTATGCATAAGCCAACCCACAAAACGAGCGTCCGGGCACTAAG
* * * * * * * * *
32282188 CCAGCCGAAGAGGCATAATGCGCAAGTCGAGGATCGGCCTGGTCC-CCCTCTGCATGTTGTCGGT
65 CCAACAGAAGAGGCAGAATGCGCAAGTCGAGGATCGACCCGATCCTCCC-CTGCATGCTATCGAT
* **
32282252 CCCGCTGCCACAACCCTCGGTCCAG-CTAGGG
129 CCCGCTGCCACAACCCTCGGTCCGGTCT-GAT
* *
32282283 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
1 CTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCAC
32282324 GAAATGGGCG
Statistics
Matches: 161, Mismatches: 35, Indels: 8
0.79 0.17 0.04
Matches are distributed among these distances:
158 6 0.04
159 154 0.96
160 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.19
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACAAAACGAGCGTCCGGGCACTAAGC
CAACAGAAGAGGCAGAATGCGCAAGTCGAGGATCGACCCGATCCTCCCCTGCATGCTATCGATCC
CGCTGCCACAACCCTCGGTCCGGTCTGAT
Found at i:32282470 original size:26 final size:26
Alignment explanation
Indices: 32282441--32282493 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
32282431 CCGATTCGAT
*
32282441 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAAACTAGGAATGAACTCCGTATG
* * *
32282467 CTTAAACTGGGGATGAACTCTGTATG
1 CTTAAACTAGGAATGAACTCCGTATG
32282493 C
1 C
32282494 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAAACTAGGAATGAACTCCGTATG
Found at i:32282834 original size:26 final size:26
Alignment explanation
Indices: 32282805--32282883 Score: 142
Period size: 26 Copynumber: 3.0 Consensus size: 26
32282795 TCGATCCGAT
32282805 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
32282831 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
32282857 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
32282883 C
1 C
32282884 CTAAGCCAAC
Statistics
Matches: 52, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
26 51 0.98
27 1 0.02
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:32283044 original size:26 final size:26
Alignment explanation
Indices: 32283015--32283067 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
32283005 CCGGTCCGAT
32283015 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
32283041 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
32283067 C
1 C
32283068 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:32283446 original size:26 final size:26
Alignment explanation
Indices: 32283395--32283447 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
32283385 TCGATCCGAT
*
32283395 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
32283421 CTTAGACAT-GGAATGAACTCTATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
32283447 C
1 C
32283448 CTAAGCAAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:32283620 original size:26 final size:26
Alignment explanation
Indices: 32283591--32283643 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32283581 CTGGTCCAAT
*
32283591 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
32283617 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
32283643 C
1 C
32283644 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:32283743 original size:196 final size:196
Alignment explanation
Indices: 32283225--32283744 Score: 612
Period size: 196 Copynumber: 2.6 Consensus size: 196
32283215 CGACTGGGGT
* * * * * * *
32283225 TTAGTCATGGAATGAACTCCGTATGCTTAAGCCAACCTAGGAAACAAGCGTGCGGGCACTCAACC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCC
* * * * * * *
32283290 GGTCGTAGAGGCAGAATGCGCAAGTTAGGGATCGGCTCGACCCCCCTCTGCATGCTGCCGATCCT
66 GGCCGAAGAGGCAGAATGTGCAAGCTAGGGATCGGCTCGATCCCCCT-TACATGCTGTCGATCCT
* * * *
32283355 GCTATTGGTCCTACTATCGCAACCCTTAGTTCGATCCGATCTTAGACTGGGAATGAACTCCGTAT
130 ACTACTGGTCCTACTATCGCAACCCTCAGTTCGATCCAATCTTAGACTGGGAATGAACTCCGTAT
32283420 GC
195 GC
** * * *
32283422 TTAGACATGGAATGAACTCTATATGCCTAAGCAAACCCATGAAACGAGCGTGCGGGAGCTTAGCC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCC
* * * * *
32283487 GACCGAAGAGGTAGAATGTGCAAGCTGGGGATCGGC-CTGATCCCCCCTACATGTTGTCGATCCT
66 GGCCGAAGAGGCAGAATGTGCAAGCTAGGGATCGGCTC-GATCCCCCTTACATGCTGTCGATCCT
* ** * * * *
32283551 ACTGCTGGTCCTGTTATCGTAACCCTC-GGTCTGGTCCAATCTTAGACTGGGAATGAACTCTGTA
130 ACTACTGGTCCTACTATCGCAACCCTCAGTTC-GATCCAATCTTAGACTGGGAATGAACTCCGTA
32283615 TGC
194 TGC
* * *
32283618 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGAGGGCGCTCAGCT
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCC
* * * * *
32283683 GGCCGGAGAGGCAGAATGTGCAAGCCAGGGATCGGCTCGGTTCCCCTTACGTGCTGTCGATC
66 GGCCGAAGAGGCAGAATGTGCAAGCTAGGGATCGGCTCGATCCCCCTTACATGCTGTCGATC
32283745 TGGTTGTTGC
Statistics
Matches: 267, Mismatches: 53, Indels: 7
0.82 0.16 0.02
Matches are distributed among these distances:
195 3 0.01
196 174 0.65
197 90 0.34
ACGTcount: A:0.24, C:0.26, G:0.27, T:0.23
Consensus pattern (196 bp):
TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCC
GGCCGAAGAGGCAGAATGTGCAAGCTAGGGATCGGCTCGATCCCCCTTACATGCTGTCGATCCTA
CTACTGGTCCTACTATCGCAACCCTCAGTTCGATCCAATCTTAGACTGGGAATGAACTCCGTATG
C
Found at i:32284098 original size:26 final size:26
Alignment explanation
Indices: 32284057--32284109 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
32284047 CCAATCTGAT
32284057 CTTAGACTGAGAATGAACTTCA-TATG
1 CTTAGACTGAGAATGAA-TTCAGTATG
* *
32284083 CTTAGACTGGGGATGAATTCAGTATG
1 CTTAGACTGAGAATGAATTCAGTATG
32284109 C
1 C
32284110 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 4 0.17
26 20 0.83
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGAGAATGAATTCAGTATG
Found at i:32284817 original size:26 final size:26
Alignment explanation
Indices: 32284779--32284831 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
32284769 GGCTCAAAAT
32284779 CTTAGACTGGGAAAGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
* *
32284805 CTTAGACAT-GGAATGAACTTCGTATG
1 CTTAGAC-TGGGAAAGAACTCCGTATG
32284831 C
1 C
32284832 CGCAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCGTATG
Found at i:32285577 original size:158 final size:159
Alignment explanation
Indices: 32285318--32285680 Score: 397
Period size: 158 Copynumber: 2.3 Consensus size: 159
32285308 ACTCTGAATG
* *
32285318 CTTAGACATGGAATGAATTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAAT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAAC
* * * *
32285383 TGGTCAGAAAGGCAGAATGTGCAAGTCAGAGTTCGACCCGATCCCCC-CTGCGTGCTCTCGATCC
66 CGGTCAGAAAGGCAGAATGCGCAAGCCAGAGATCGACCCGATCCCCCTCTGCGTGCTCTCGATCC
*
32285447 TGCTGCTGCAACCCTCAGTTTGGCCCGAT
131 CGCTGCTGCAACCCTCAGTTTGGCCCGAT
* * * * * * *
32285476 CTTAGAC-TGGGAATGAACTCCGTATGTCTAAGTCAACCCACGAAATGAGTGTGCGGGTGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
* * * * * *
32285540 CCGGTCGGAAAGGCATAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTCTGCGTGCTGTCGATC
65 CCGGTCAGAAAGGCAGAATGCGCAAGCCAGAGATCGACCCGATCCCCCTCTGCGTGCTCTCGATC
*** ** * ** ** **
32285605 CCGCTGCCATAACCCTTGGTCTAACTGGGG
130 CCGCTGCTGCAACCCTCAGTTTGGCCCGAT
* *
32285635 CTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCATGAAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAC
32285681 AGCCGGTCGG
Statistics
Matches: 165, Mismatches: 37, Indels: 5
0.80 0.18 0.02
Matches are distributed among these distances:
157 1 0.01
158 92 0.56
159 71 0.43
160 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAAC
CGGTCAGAAAGGCAGAATGCGCAAGCCAGAGATCGACCCGATCCCCCTCTGCGTGCTCTCGATCC
CGCTGCTGCAACCCTCAGTTTGGCCCGAT
Found at i:32285795 original size:142 final size:143
Alignment explanation
Indices: 32285538--32285797 Score: 335
Period size: 142 Copynumber: 1.8 Consensus size: 143
32285528 GCGGGTGCTG
* * *
32285538 AGCCGGTCGGAAAGGCATAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTCTGCGTGCTGTCGA
1 AGCCGGTCGGAAAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCTCTGCGTGCTGCCGA
* * * * *
32285603 TCCCGCTGCCATAACCCTTGGTCTAACTGGGGCTTAGACATGGAATGAACTCCTTATGCCTAAGC
66 TCCCGCTGCCACAACCCTCGGTCCAACTCGAGCTTAGACATGGAATGAACTCCTTATGCCTAAGC
32285668 CAACCCATGAAAC
131 CAACCCATGAAAC
* * **
32285681 AGCCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACTCGATCCTTC-CTGCGTGCTGCCGA
1 AGCCGGTCGGAAAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCTCTGCGTGCTGCCGA
* * *** *
32285745 TCCTGCTGCCGCAACCCTCGGTCCGGTTCGATCTTAGAC-TGGGAATGAACTCC
66 TCCCGCTGCCACAACCCTCGGTCCAACTCGAGCTTAGACAT-GGAATGAACTCC
32285798 GTAAGCGTAG
Statistics
Matches: 98, Mismatches: 18, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
141 1 0.01
142 53 0.54
143 44 0.45
ACGTcount: A:0.21, C:0.32, G:0.28, T:0.20
Consensus pattern (143 bp):
AGCCGGTCGGAAAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCTCTGCGTGCTGCCGA
TCCCGCTGCCACAACCCTCGGTCCAACTCGAGCTTAGACATGGAATGAACTCCTTATGCCTAAGC
CAACCCATGAAAC
Found at i:32287116 original size:159 final size:156
Alignment explanation
Indices: 32286777--32287278 Score: 451
Period size: 159 Copynumber: 3.2 Consensus size: 156
32286767 ACTCCATATG
* *
32286777 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAAG
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCT-AA-
* * * * * * **
32286842 GCCATCGATAGAGGTAGAATGCACAAGCCGGGGATCGACCTGATCCCCCTTGCGTGCTGTCGATC
64 GCCATC-AGAGAGGCAGAATGCGCAAGCCGGGGATCGGCC-GGTCCCCCTTACGTGCTACCGATC
* * ** * *
32286907 CTGCTGCCGCAACCCTCGATTTGGTTCGAT
127 CTACTGCCACAACCCTCGATCAGCTGCGAT
* * *
32286937 CTTAGA-TTGGGAATGAACTCCGTATGCTTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTAAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTAAG
* * *
32287001 CCGATCAGAGAGGCATAATGCGCAAGCCAGGGATCGGCTCGGTCCCCCTCTATGTGCTACCGATC
65 CC-ATCAGAGAGGCAGAATGCGCAAGCCGGGGATCGGC-CGGTCCCCCT-TACGTGCTACCGATC
* * *
32287066 GC-ACTGCCACAACCCTCGGTCCAGCTGGGGT
127 -CTACTGCCACAACCCTCGAT-CAGCTGCGAT
* * *
32287097 -TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCAG-TCAG
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGC-GCTAAG
* * * * * *
32287160 CCAGTCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCAGTCCCCC-TGCATGCTGCCGATCC
65 CCA-TCAGAGAGGCAGAATGCGCAAGCCGGGGATCGG-CCGGTCCCCCTTACGTGCTACCGATCC
* ** * * *
32287224 TGCAACTACAACCCTCGATCTGAT-CTGAT
128 TACTGCCACAACCCTCGATCAGCTGC-GAT
* *
32287253 CTTAGAC-TAGAATGAACTTCGTATGC
1 CTTAGACATGGAATGAACTCCGTATGC
32287279 TTAGACTGGG
Statistics
Matches: 277, Mismatches: 52, Indels: 30
0.77 0.14 0.08
Matches are distributed among these distances:
156 22 0.08
157 30 0.11
158 38 0.14
159 125 0.45
160 62 0.22
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (156 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTAAGC
CATCAGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCGGTCCCCCTTACGTGCTACCGATCCTAC
TGCCACAACCCTCGATCAGCTGCGAT
Found at i:32287998 original size:26 final size:26
Alignment explanation
Indices: 32287961--32288012 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
32287951 GCTCAAAATA
*
32287961 TTAGACTGGGAATGAACTCTGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
32287987 TTAGACAT-GGAATGAACTCCGTATGC
1 TTAGAC-TGGGAATGAACTCCGTATGC
32288013 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:32289899 original size:159 final size:158
Alignment explanation
Indices: 32289539--32290030 Score: 401
Period size: 158 Copynumber: 3.1 Consensus size: 158
32289529 AACTCTGTAT
* * * * * * *
32289539 GCTTAGAAATGGAATGAACTTCGTATGCCTAAACCAGCCCACGAAACGAGCGTGCGGGCGTTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAGGAGCGTGCAGGCGCTCAG
* * * * *
32289604 CCGATCGAAGAGGCAAAATGCGCAAGTAGGGGATTGACCCGATCCCCCCTGCGTGCTGTCGATCC
66 CCGACCGAAGAGGCAAAATGCGCAAGCAGGGGATTGACCAGATCCCCCCTACGTGCTGCCGATCC
* * * *
32289669 TGCTGCCGCAACCCTCGGTCCGATTCGA
131 CGCTACCACAACCCTCGGTCCGACTCGA
* * * * *
32289697 TCTTAGAC-TAGGAATGAACTCCGTATGTCTAAGTCAACACACGAAAGGAGCGTGCAGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAGGAGCGTGCAGGCGCTCA
* * *
32289761 GCCGACCGGAGAGGCATAATGC-CTAAGCCGGGGATCTG-CTCAG-TCCCCCTCTACGTGCTGCC
65 GCCGACCGAAGAGGCAAAATGCGC-AAGCAGGGGAT-TGAC-CAGATCCCCC-CTACGTGCTGCC
* * *
32289823 -AGTCCCGCTACCATAACCCTCGGTCC-AGCTGGG
126 GA-TCCCGCTACCACAACCCTCGGTCCGA-CTCGA
* *
32289856 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGG-GCGTGC-GATCGCTC
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA-GGAGCGTGCAG-GCGCTC
* * * * * * * * * * *
32289919 AACAGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGAT
64 AGCCGACCGAAGAGGCAAAATGCGCAAGCAGGGGATTGACCAGATCCCCCCTACGTGCTGCCGAT
* ** * *
32289984 CCAGCTGTCGCAACCCTCGGTTCGA-TCCGA
129 CCCGCTACCACAACCCTCGGTCCGACT-CGA
*
32290014 TCTTAGAC-TGGGAATGA
1 GCTTAGACAT-GGAATGA
32290031 GCTTTATATG
Statistics
Matches: 265, Mismatches: 52, Indels: 34
0.75 0.15 0.10
Matches are distributed among these distances:
157 4 0.02
158 134 0.51
159 123 0.46
160 4 0.02
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAGGAGCGTGCAGGCGCTCAG
CCGACCGAAGAGGCAAAATGCGCAAGCAGGGGATTGACCAGATCCCCCCTACGTGCTGCCGATCC
CGCTACCACAACCCTCGGTCCGACTCGA
Found at i:32291217 original size:159 final size:158
Alignment explanation
Indices: 32290735--32291233 Score: 511
Period size: 159 Copynumber: 3.1 Consensus size: 158
32290725 GTGGCTCAAA
* * *
32290735 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGGCAACCCACGAAATGAGCGTGCGGGCACTCA
1 ATCTTAGACTGGGAATGAACTCCGTATACCTAAGCCAACCCACGAAATGAGCGTGTGGGCACTCA
* * * * *
32290800 ACTGGCCGGAGAGGCAGAATGCGCAAGCTGAGGATCGGCCCGATCCCCCCTACGTGCTATCAATC
66 GCAGGCCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGATCCCCCCTACGTGCTATCGATC
** * * *
32290865 CTGCTGTTGCAACCCTCAATCTTTTCTG
131 CTGCTGTCACAACCCTCGATCCTGTCTG
* * * * * * * * *
32290893 ATCTTAGACTGGGAATGAACTCTGTATACATAAGTCAACCTACAAAATGAGTGTGTAGGCGCTGA
1 ATCTTAGACTGGGAATGAACTCCGTATACCTAAGCCAACCCACGAAATGAGCGTGTGGGCACTCA
** * * * *
32290958 GCAGGCCAAAGAGGCATAATGCACAAGCTGGGGATC-AGCTCGATCCCCCTCTACGTGCTGTCGA
66 GCAGGCCGGAGAGGCAGAATGCGCAAGCTGGGGATCGA-CCCGATCCCCC-CTACGTGCTATCGA
* * * *
32291022 TCCCGCTGCCACAACCCTCGGT-CTGACTGG
129 TCCTGCTGTCACAACCCTCGATCCTGTCT-G
** * * *
32291052 GGCTTAGACAT-GGAATGAACTCCCTATACCTAAGCCAACCCATGAAATGGGCGTGTGGGCACTC
1 ATCTTAGAC-TGGGAATGAACTCCGTATACCTAAGCCAACCCACGAAATGAGCGTGTGGGCACTC
* * * * * *
32291116 AGCAGGTCGGAGAGGAAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCTCCTGCATGCTATCGA
65 AGCAGGCCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGATCCCC-CCTACGTGCTATCGA
*
32291181 TCCTGCTGTCACAACCCTCGATCCGGTCTG
129 TCCTGCTGTCACAACCCTCGATCCTGTCTG
*
32291211 ATCTTAGA-TTGGAAGTGAACTCC
1 ATCTTAGACTGGGAA-TGAACTCC
32291234 ATATGCTTAG
Statistics
Matches: 268, Mismatches: 64, Indels: 17
0.77 0.18 0.05
Matches are distributed among these distances:
157 1 0.00
158 100 0.37
159 160 0.60
160 7 0.03
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.21
Consensus pattern (158 bp):
ATCTTAGACTGGGAATGAACTCCGTATACCTAAGCCAACCCACGAAATGAGCGTGTGGGCACTCA
GCAGGCCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGATCCCCCCTACGTGCTATCGATC
CTGCTGTCACAACCCTCGATCCTGTCTG
Found at i:32291674 original size:170 final size:171
Alignment explanation
Indices: 32291324--32291651 Score: 423
Period size: 170 Copynumber: 1.9 Consensus size: 171
32291314 GGCCGGTTGT
* * * * *
32291324 AGAGGCATAATGCGTAAGTCGGGGATCAACCCGATCCCCCTCTGCGTGCTGTCGATCCCATTACT
1 AGAGGCAGAATGCGCAAGTCGGGGATCAACCAGATCCCCCTCTGCATGCTGTCGATCCCACTACT
*
32291389 GGTCCTGCTACCACAACCCTCAGTCCGGCTAGGGCTTAGACATGGAATGAACTCCATACGCCTAA
66 GGTCCTGCTACCACAACCCTCAGTCCGGCTAGAGCTTAGACATGGAATGAACTCCATACGCCTAA
*
32291454 GCCAACCCATGAAACGAGCGTGCGGGTGCTCAACCGGCCGG
131 GCCAACCCACGAAACGAGCGTGCGGGTGCTCAACCGGCCGG
* **
32291495 AGAGGCAGAATGCGCAAG-CTGGGGATCGACCTAG-TCCCCC-CTGCATGCTGTCGATCCTGCTA
1 AGAGGCAGAATGCGCAAGTC-GGGGATCAACC-AGATCCCCCTCTGCATGCTGTCGATCCCACTA
* * * * * * * *
32291557 CTGGTCTTGCTGCTACAACCCTCAGTCTGGTCT-GATCTTAGA-TTGGGAATGAACTCCGTATGC
64 CTGGTCCTGCTACCACAACCCTCAGTCCGG-CTAGAGCTTAGACAT-GGAATGAACTCCATACGC
32291620 CTAAGCCAACCCACGAAACGAGCGTGCGGGTG
127 CTAAGCCAACCCACGAAACGAGCGTGCGGGTG
32291652 TTCGGTCTGT
Statistics
Matches: 135, Mismatches: 18, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
169 1 0.01
170 99 0.73
171 34 0.25
172 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (171 bp):
AGAGGCAGAATGCGCAAGTCGGGGATCAACCAGATCCCCCTCTGCATGCTGTCGATCCCACTACT
GGTCCTGCTACCACAACCCTCAGTCCGGCTAGAGCTTAGACATGGAATGAACTCCATACGCCTAA
GCCAACCCACGAAACGAGCGTGCGGGTGCTCAACCGGCCGG
Found at i:32291695 original size:170 final size:170
Alignment explanation
Indices: 32291358--32291723 Score: 405
Period size: 170 Copynumber: 2.1 Consensus size: 170
32291348 ATCAACCCGA
*** *
32291358 TCCCCCTCTGCGTGCTGTCGATCCCATTACTGGTCCTGCTACCACAACCCTCAGTCCGGCTAGGG
1 TCCCCC-CTGCGTGCTGTCGATCCTGCTACTGGTCCTGCTACCACAACCCTCAGTCCGGCTAGAG
*
32291423 CTTAGACATGGAATGAACTCCATACGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAAC
65 CTTAGACATGGAATGAACTCCATACGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAAC
* * *** * *
32291488 CGGCCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCTAG
130 CGGCCGGAGAGGCAGAAAGCACAAGCCAAGAATCGACCCAG
* * * * * *
32291529 TCCCCCCTGCATGCTGTCGATCCTGCTACTGGTCTTGCTGCTACAACCCTCAGTCTGGTCT-GAT
1 TCCCCCCTGCGTGCTGTCGATCCTGCTACTGGTCCTGCTACCACAACCCTCAGTCCGG-CTAGAG
* * * * **
32291593 CTTAGA-TTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGTTCGG
65 CTTAGACAT-GGAATGAACTCCATACGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAA
* * * * *
32291657 TCTGTCGGAGAGGCAGAAAGCATAAGCCAAGAATCGACCCGG
129 CCGGCCGGAGAGGCAGAAAGCACAAGCCAAGAATCGACCCAG
*
32291699 TCCCCCC-GACGTGCTATCGATCCTG
1 TCCCCCCTG-CGTGCTGTCGATCCTG
32291724 GTGCCGCAAC
Statistics
Matches: 161, Mismatches: 31, Indels: 7
0.81 0.16 0.04
Matches are distributed among these distances:
169 2 0.01
170 151 0.94
171 8 0.05
ACGTcount: A:0.22, C:0.31, G:0.26, T:0.20
Consensus pattern (170 bp):
TCCCCCCTGCGTGCTGTCGATCCTGCTACTGGTCCTGCTACCACAACCCTCAGTCCGGCTAGAGC
TTAGACATGGAATGAACTCCATACGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAACC
GGCCGGAGAGGCAGAAAGCACAAGCCAAGAATCGACCCAG
Found at i:32292627 original size:26 final size:26
Alignment explanation
Indices: 32292577--32292628 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
32292567 CCGATCCAAT
**
32292577 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
32292603 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
32292629 TCTAAGTCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.15, G:0.29, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:32293685 original size:158 final size:156
Alignment explanation
Indices: 32293324--32293700 Score: 375
Period size: 157 Copynumber: 2.4 Consensus size: 156
32293314 AACTCCGTAT
* * * * *
32293324 GCTTAGACATGGAATGAACTTCATATGCCTAAGCCAACCCACGAAATGAGCTTACGGGCGCTTAG
1 GCTTAGAC-TGGAATGAACTCCATATGCCTAATCCAACCCACGAAACGAGCGTACGGGCGCTGAG
* * * * *
32293389 CTGGCCGGAAAGGCAAAATGCGCAAGCCGGGGATCGGCCTGATCCCTCTACGTACTGTCGATCTT
65 CTCGACGGAAAGGCAAAATGCGCAAGCCGGGGATAGGCCTGATCCCTCTACGTACTCTCGATCTC
* *
32293454 ACTACCGCAACCCTCGGTCCGGTCTGA
130 ACTACCACAACCCTCAGTCCGGTCTGA
* * *
32293481 TCTTAGACTGGGAATGAACTCCGTATGCATAAGT-CAACCCACGAAACGAGCGTACGGGCGCTGA
1 GCTTAGACT-GGAATGAACTCCATATGCCTAA-TCCAACCCACGAAACGAGCGTACGGGCGCTGA
* * * ** * *
32293545 GC-CGACTGAATAGGCATAATGCGTAAGCCGGGGATAGGCCTGATCCCCTCTGTGTGCTACT-GG
64 GCTCGACGGAA-AGGCAAAATGCGCAAGCCGGGGATAGGCCTGAT-CCCTCTACGTACT-CTCGA
* * *
32293608 TCTCACTGCCACAACCCTCAGTCTGG-CTGGG
126 TCTCACTACCACAACCCTCAGTCCGGTCT-GA
* * * * * *
32293639 GCTTAAACGTGGAATGAACTCCCTATGCCTAATCCAACCCATGAAACGGGTGTGCGGGCGCT
1 GCTTAGAC-TGGAATGAACTCCATATGCCTAATCCAACCCACGAAACGAGCGTACGGGCGCT
32293701 CAGTCGGTCG
Statistics
Matches: 179, Mismatches: 33, Indels: 15
0.79 0.15 0.07
Matches are distributed among these distances:
156 6 0.03
157 88 0.49
158 83 0.46
159 2 0.01
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (156 bp):
GCTTAGACTGGAATGAACTCCATATGCCTAATCCAACCCACGAAACGAGCGTACGGGCGCTGAGC
TCGACGGAAAGGCAAAATGCGCAAGCCGGGGATAGGCCTGATCCCTCTACGTACTCTCGATCTCA
CTACCACAACCCTCAGTCCGGTCTGA
Found at i:32293849 original size:26 final size:26
Alignment explanation
Indices: 32293798--32293850 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
32293788 CTGGTCTGAT
*
32293798 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
32293824 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
32293850 C
1 C
32293851 CTCAATCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:32294597 original size:159 final size:159
Alignment explanation
Indices: 32294202--32294597 Score: 393
Period size: 159 Copynumber: 2.5 Consensus size: 159
32294192 AACTTCATAT
* * * *
32294202 GCTTTGACATGGAATGAACTCAGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAACCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * * * * **
32294267 TTGGCCGGAGAGACAGAATGTGTAAGCCGGGGACCGGCCCGGTCCCCCCTTGCGTGTTGTCGATC
66 CTGGCCGGAGAGGCACAATGCGTAAGCCGGGGACCGACCCGGTCCCCCCTTACATGCCGTCGATC
* * * * *
32294332 CTGCTGCCGCAACCCTTGTTCTGGTCTGA
131 CCGCTGCCACAACCCTCGATCCGGTCTGA
* ** * * * *
32294361 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAATTCAACCCATGAAACGAGCGTACAGGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAACCAACCCATGAAACGAGCGTGCGGGCGCTCA
* * * * * * * * * *
32294425 ACCGACCAGAGAGGCACAATGCGTAAGCTGGGGATCGATCCGGT-CTCGCTCTACATGCCGTCGG
65 GCTGGCCGGAGAGGCACAATGCGTAAGCCGGGGACCGACCCGGTCCCCCCT-TACATGCCGTCGA
*
32294489 TCCCGCTGCCACAACTCTCGATCCGG-CTGA
129 TCCCGCTGCCACAACCCTCGATCCGGTCTGA
* * *
32294519 GGCTTAGACATGGAATGAACTCCCTATGCCTAAACCAACCCATGAAATGGGCGTGCGGGCGCTCA
1 -GCTTAGACATGGAATGAACTCCGTATGCCTAAACCAACCCATGAAACGAGCGTGCGGGCGCTCA
32294584 GCTGGCCGGAGAGG
65 GCTGGCCGGAGAGG
32294598 TAGAATACGC
Statistics
Matches: 184, Mismatches: 49, Indels: 8
0.76 0.20 0.03
Matches are distributed among these distances:
158 9 0.05
159 174 0.95
160 1 0.01
ACGTcount: A:0.22, C:0.29, G:0.29, T:0.20
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAACCAACCCATGAAACGAGCGTGCGGGCGCTCAG
CTGGCCGGAGAGGCACAATGCGTAAGCCGGGGACCGACCCGGTCCCCCCTTACATGCCGTCGATC
CCGCTGCCACAACCCTCGATCCGGTCTGA
Found at i:32294708 original size:26 final size:26
Alignment explanation
Indices: 32294679--32294731 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
32294669 CCGGTTCGAT
* *
32294679 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
32294705 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
32294731 C
1 C
32294732 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:32295096 original size:26 final size:26
Alignment explanation
Indices: 32295060--32295112 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
32295050 CTGGTATAAT
*
32295060 CTTAGGCTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* * *
32295086 CTTAGACTGGGGATTAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
32295112 C
1 C
32295113 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:32296540 original size:26 final size:26
Alignment explanation
Indices: 32296489--32296541 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
32296479 GGCTCAAAAT
*
32296489 CTTAGACTGGGAATGAACTGCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
32296515 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
32296541 C
1 C
32296542 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:32296907 original size:159 final size:153
Alignment explanation
Indices: 32296516--32297014 Score: 430
Period size: 157 Copynumber: 3.2 Consensus size: 153
32296506 CTGCATATGC
* * *
32296516 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATCAAACAAGTGTGCGGGCGTTCAGTC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA-CAAAC-AGCGTACGGGCGCTCAGTC
* * * *
32296581 GGCCGGAGAGGCAGAATGTGCAAGCCGAGGATCGGGCCAGTCCCCC-CTACACGCTATCGATCCC
64 GGCCGGAGAGGCA-AATGCGCAAGCCG-GGATC-GGCCGGTCCCCCTCTGCATGCTATCGATCCC
* * * * *
32296645 GCTGTCGCAACCCTTGATCCGGTTCAAT
126 GCTGCCACAACCCTTGGTCCGCTGCAAT
* * * * * * *
32296673 TTAGAC-TGAGAATCAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTATGGGCGCTGAGC
1 TTAGACATG-GAATGAACTCCGTATGCCTAAGCCAACCCA-CAAAC-AGCGTACGGGCGCTCAGT
* * * * *
32296737 CAGCCGAAGAGGCATAATGCGCAAGCCAGGGATCGGCTCGGTCCCCCTCTGCGTGCTACCGGTCC
63 CGGCCGGAGAGGCA-AATGCGCAAGCC-GGGATCGGC-CGGTCCCCCTCTGCATGCTATCGATCC
* ***
32296802 CGCTGCCACAACCCTTGGTCTGACTGGGGT
125 CGCTGCCACAACCCTTGGTCCG-CTGCAAT
* * *
32296832 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACACGCGTACGAGTGCTCAGTC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAC-AAACA-GCGTACGGGCGCTCAGTC
* * * * **
32296897 GGCCGGAGAGGCAGATGCGCAAGTCGGGGATCAGCCTGGT-CCCCTCTGCATGCTGTCGATCTTG
64 GGCCGGAGAGGCAAATGCGCAAG-CCGGGATCGGCC-GGTCCCCCTCTGCATGCTATCGATCCCG
* * * *
32296961 CTGCCACAACCCTCGGTCCGATCCGAT
127 CTGCCACAACCCTTGGTCCGCTGCAAT
*
32296988 CTTAGA-TTGGGAATGAACTCCGTATGC
1 -TTAGACAT-GGAATGAACTCCGTATGC
32297015 TTAGACCAGG
Statistics
Matches: 271, Mismatches: 59, Indels: 24
0.77 0.17 0.07
Matches are distributed among these distances:
156 9 0.03
157 145 0.54
158 52 0.19
159 63 0.23
160 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (153 bp):
TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAACAGCGTACGGGCGCTCAGTCGG
CCGGAGAGGCAAATGCGCAAGCCGGGATCGGCCGGTCCCCCTCTGCATGCTATCGATCCCGCTGC
CACAACCCTTGGTCCGCTGCAAT
Found at i:32298093 original size:26 final size:26
Alignment explanation
Indices: 32298057--32298108 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
32298047 GCTCAAAATA
* *
32298057 TTAGACTAGGAATGAACTCTGTATGC
1 TTAGACAAGGAATGAACTCTGAATGC
32298083 TTAGACAAGGAATGAACTCTGAATGC
1 TTAGACAAGGAATGAACTCTGAATGC
32298109 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.35, C:0.15, G:0.23, T:0.27
Consensus pattern (26 bp):
TTAGACAAGGAATGAACTCTGAATGC
Found at i:32298479 original size:26 final size:26
Alignment explanation
Indices: 32298450--32298499 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
32298440 TCGGTCCAAT
*
32298450 CTTAGACTGGGAATGAACTTCGTACG
1 CTTAGACTGGGAATGAACTCCGTACG
*
32298476 CTTAGACTGGGGATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
32298500 TACCTAAGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTACG
Found at i:32298859 original size:26 final size:26
Alignment explanation
Indices: 32298830--32298881 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
32298820 TCCAGTCCGA
32298830 TCTTAGAC-TGGGAATGAACTCCGTAT
1 TCTTAGACAT-GGAATGAACTCCGTAT
*
32298856 TCTTGGACATGGAATGAACTCCGTAT
1 TCTTAGACATGGAATGAACTCCGTAT
32298882 GCCTAAGCCA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.31
Consensus pattern (26 bp):
TCTTAGACATGGAATGAACTCCGTAT
Found at i:32299285 original size:159 final size:157
Alignment explanation
Indices: 32298861--32299352 Score: 496
Period size: 159 Copynumber: 3.1 Consensus size: 157
32298851 CGTATTCTTG
* * *
32298861 GACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGTGCTCAGTCGGT
1 GACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGT
* *
32298926 CGGAGAGGCAAAATGCGCAAGTCAGGGATC-AGCCCGGTCCCCCCCTGCGTGCTATCGATCATGC
66 CGGAGAGGCAAAATGCGCAAGTCAGGGATCGA-CCC-GT-CCCCCCTGCGTGCTGTCGATCCTGC
** * * *
32298990 TGCTGCAACCCTCAGTCCGATCTGATCTTA
128 TGCCACAACCCTCGGTCTGATCTGAGCTTA
* * * *
32299020 GAC-TGGGAATGAACTTCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGTTGAGCCGG
1 GACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGG
* * * ** * * * *
32299084 -CTGGAGAGGCATAATGTGCAAGTC-GAGAATCGACGTTGTCCCCTTCTACGTGCTGTCGGTCCC
65 TC-GGAGAGGCAAAATGCGCAAGTCAG-GGATCGAC-CCGTCCCC-CCTGCGTGCTGTCGATCCT
* *
32299147 ACTGCCACAACCCTCGGTCTGA-CTAGGGCTTA
126 GCTGCCACAACCCTCGGTCTGATCT-GAGCTTA
* * * *
32299179 GACATGGAATGAACTCCCTATGGCTAAGCCAACCCATGAAAC-AGGCGTACGGGTGCTCAGCCGG
1 GACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGA-GCGTGCGGGTGCTCAGCCGG
* * *
32299243 TCGGAAAGGCAGAATGCGCAAGTCAGGGATCGACCCGATCCCCCCTGCGTGCTGCCGATCCTGCT
65 TCGGAGAGGCAAAATGCGCAAGTCAGGGATCGACCCG-TCCCCCCTGCGTGCTGTCGATCCTGCT
* * *
32299308 ACCACAACCCTCGGTCT-AGTCCGATCTTA
129 GCCACAACCCTCGGTCTGA-TCTGAGCTTA
32299337 GA-ATGGGAATGAACTC
1 GACAT-GGAATGAACTC
32299353 TGCATGCTTA
Statistics
Matches: 269, Mismatches: 49, Indels: 31
0.77 0.14 0.09
Matches are distributed among these distances:
157 3 0.01
158 61 0.23
159 201 0.75
160 4 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (157 bp):
GACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGT
CGGAGAGGCAAAATGCGCAAGTCAGGGATCGACCCGTCCCCCCTGCGTGCTGTCGATCCTGCTGC
CACAACCCTCGGTCTGATCTGAGCTTA
Found at i:32306950 original size:26 final size:26
Alignment explanation
Indices: 32306909--32306961 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32306899 CCAGTCTGAT
*
32306909 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
32306935 CTTAGACTTGGG-ATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
32306961 C
1 C
32306962 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:32307303 original size:26 final size:26
Alignment explanation
Indices: 32307265--32307317 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
32307255 CTGGTTTGAT
32307265 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
32307291 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
32307317 C
1 C
32307318 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:32307420 original size:184 final size:184
Alignment explanation
Indices: 32307106--32307475 Score: 447
Period size: 184 Copynumber: 2.0 Consensus size: 184
32307096 TCCAGCTGGG
* * * * * *
32307106 GCTTAGACGTGGAATGAACTCTGTATGCCGAAGTCAACCCATGGAACGAGCGTGTGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCGAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * ** * *
32307171 TCAATCGGAGAGGCAGAATGCACAAGTCGAGGATCGGCTCGGCCCCCCCTACATGCTACCGATCC
66 CCAACCAAAGAGGCAGAATGCACAAGTCGAGGATCGGCCCGGCCCACCCTACATGCTACCGATCC
* *** *
32307236 TGCTACCGCAACCCACGGTCTGGTTTGATCTTAGACTGGGAATGAACTCCGTAT
131 TGCTACCGCAACCCACAGTCCAATCTGATCTTAGACTGGGAATGAACTCCGTAT
* *
32307290 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCGAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
** * * * * * **
32307355 CCGGCCAAAGAGGCAGAATGCGCAAGCTGGA-GA-CTGGCCCGGTCCACCCTGCGTGCTGTCGAT
66 CCAACCAAAGAGGCAGAATGCACAAG-TCGAGGATC-GGCCCGGCCCACCCTACATGCTACCGAT
*
32307418 CCTGCTACCGCAACCCTCAGTCCAATCTGATCTTAGACTGGGAATGAACTCCGTAT
129 CCTGCTACCGCAACCCACAGTCCAATCTGATCTTAGACTGGGAATGAACTCCGTAT
32307474 GC
1 GC
32307476 CTAAGTCAAC
Statistics
Matches: 155, Mismatches: 29, Indels: 4
0.82 0.15 0.02
Matches are distributed among these distances:
183 1 0.01
184 151 0.97
185 3 0.02
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.19
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCGTATGCCGAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
CCAACCAAAGAGGCAGAATGCACAAGTCGAGGATCGGCCCGGCCCACCCTACATGCTACCGATCC
TGCTACCGCAACCCACAGTCCAATCTGATCTTAGACTGGGAATGAACTCCGTAT
Found at i:32307716 original size:159 final size:156
Alignment explanation
Indices: 32307290--32307719 Score: 454
Period size: 159 Copynumber: 2.7 Consensus size: 156
32307280 AACTCCGTAT
*
32307290 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * * *
32307355 CCGGCCAAAGAGGCAGAATGCGCAAGCTGGAGA-CTGGCCCGGTCCACCCTGCGTGCTGTCGATC
66 CCGACC-AAGAGGCAGAATGCGCAAGCTGGGGATC-GGCCCGGTCC-CCCTGCATGCTGCCGATC
** * *
32307419 CTGCTACCGCAACCCTCAGTCCAATCTGA
128 CCACTACCACAACCCTCAGTCCAAGCTGA
* * * * * * *
32307448 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACAAGCGTGCGAGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCA
* * * * * *
32307512 GTC-AGCCAGAGAGGCATAATGCACAAGCTGAGGATCGACCCGGTCCCCCTTTGCATGCTGCCGG
65 GCCGA-CCA-AGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGGTCCCCC--TGCATGCTGCCGA
* * *
32307576 TCCCACTGCCACAACCCTCAGTCC-GGCTAGG
126 TCCCACTACCACAACCCTCAGTCCAAGCT-GA
* * * *
32307607 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCACTTAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * *
32307672 CCGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGTCTGGTCCCCC
66 CCGACC-AAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGGTCCCCC
32307720 CTACGTACTG
Statistics
Matches: 219, Mismatches: 43, Indels: 19
0.78 0.15 0.07
Matches are distributed among these distances:
157 5 0.02
158 90 0.41
159 121 0.55
160 3 0.01
ACGTcount: A:0.25, C:0.32, G:0.27, T:0.17
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
CCGACCAAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGGTCCCCCTGCATGCTGCCGATCCCA
CTACCACAACCCTCAGTCCAAGCTGA
Found at i:32308525 original size:26 final size:26
Alignment explanation
Indices: 32308488--32308539 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
32308478 GCTCAAAATT
*
32308488 TTAAACTGGGAATGAAGTCCGTATGC
1 TTAAACTGGGAATGAACTCCGTATGC
32308514 TTAAACAT-GGAATGAACTCCGTATGC
1 TTAAAC-TGGGAATGAACTCCGTATGC
32308540 CTAGGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.33, C:0.17, G:0.23, T:0.27
Consensus pattern (26 bp):
TTAAACTGGGAATGAACTCCGTATGC
Found at i:32308935 original size:159 final size:158
Alignment explanation
Indices: 32308512--32309051 Score: 389
Period size: 159 Copynumber: 3.4 Consensus size: 158
32308502 AAGTCCGTAT
* * * * *
32308512 GCTTAAACATGGAATGAACTCCGTATGCCTAGGCCAACCCACGAAACGAGCATGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * *
32308577 CCGGTCGAAGAGGCAGAATGCACATGCTGGGGATCGGCCCGATCCTCCCTTTCGTCTTATCGATC
66 CCGGCCGAAGAGGCAGAATGCACAAGC-CGGGATTGACCCGATCCTCCCTTGCATCTTATCGATC
* ** ** * *
32308642 TTGCTGCCGTAACCCTCGGTCTGATCTGA
130 CTGCTGCCACAACCCTCAATCCGAGCTGA
* ** * * * * * *
32308671 TCTTAGAC-TGGGAACAAACTTCGTATGCATAAGTCAACCCATGAAACGAGCGTGTGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * ** * * * *
32308735 GCTGGCCAAAGAGGCACAATACGTAAGCCGAGGATTGACCCGGTCC-CCCTCTGCATGTTGTCGG
65 GCCGGCCGAAGAGGCAGAATGCACAAGCCG-GGATTGACCCGATCCTCCCT-TGCATCTTATCGA
*
32308799 TCCCT-CTGCCACAACCCTCAATCCG-GCTGGG
128 T-CCTGCTGCCACAACCCTCAATCCGAGCT-GA
32308830 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACG-GACGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAG-CGTGCGGGCGCTCA
* * * * ** *
32308894 GCGGGCCGGAGAGGCAGAATGCACAAGCCAGGGATTGACCCGATTCC-CCC-CGCGTGC-TGCCC
65 GCCGGCCGAAGAGGCAGAATGCACAAGCC-GGGATTGACCCGA-TCCTCCCTTGCAT-CTTATCG
* * * * *
32308956 ATCCTGCTGTCACAACCCTCGATCTTG-TCTAA
127 ATCCTGCTGCCACAACCCTCAATC-CGAGCTGA
* * * * * *
32308988 TCTTAGA-ATGGGAATGAACTCCATATGCCTAAGTCAACCCACGGAACAAGCGTGCGGGTGCTCA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
32309052 ACCAATTGGA
Statistics
Matches: 293, Mismatches: 74, Indels: 29
0.74 0.19 0.07
Matches are distributed among these distances:
157 5 0.02
158 85 0.29
159 193 0.66
160 10 0.03
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGGCCGAAGAGGCAGAATGCACAAGCCGGGATTGACCCGATCCTCCCTTGCATCTTATCGATCC
TGCTGCCACAACCCTCAATCCGAGCTGA
Found at i:32309188 original size:26 final size:26
Alignment explanation
Indices: 32309159--32309211 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
32309149 CCGGTCCGAT
32309159 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
32309185 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
32309211 C
1 C
32309212 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:32309557 original size:159 final size:158
Alignment explanation
Indices: 32309184--32309685 Score: 535
Period size: 158 Copynumber: 3.2 Consensus size: 158
32309174 AACTCCGTAT
* * *
32309184 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGTGTGCGGGAGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCGCTCAG
* * * * *
32309249 CTGGCCGGAGAGGCAGAATGCGCAAGCCAGGGACCGACCCAGTCCCCCCTGCGTGCTATCGATCC
66 CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCC
* ** * *
32309314 GGCTATTGCAACCCTTGATCCGATCTGA
131 AGCTACCGCAACCCTTGGTCCGGTCTGA
** * * * *
32309342 TATTAGAC-TGGAAATGAACTCCGTATGCCTAAGTCAACCCATGAAGCGAGTGTGCGGGCGTTAA
1 GCTTAGACATGG-AATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCGCTCA
* * * * * * * *
32309406 GCCAGCCGGAAAGGCATAGTACGCAAGCTGGGGATCGACCCGGTCCCCCTCTGCATGCTGTCGGT
65 GCCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCC-CTGCGTGCTGTCGAT
* * * *
32309471 CCCGCTACCACAACCCTCGGTCCGGT-TGGG
129 CCAGCTACCGCAACCCTTGGTCCGGTCT-GA
* * **
32309501 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCGCTCAG
* * * * * *
32309566 CCGGCCAGAGAGGTAGAATGCGTAAGCCGAGGATCGACTCGATCCCCCCTGCGTGCTGTCGATCC
66 CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCC
* *
32309631 AGCTGCCGCAACCCTTGGTCCGGTCTAA
131 AGCTACCGCAACCCTTGGTCCGGTCTGA
* *
32309659 TCTTAGAC-TGGGAA-GAACTCTGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
32309686 TTAGACTGGG
Statistics
Matches: 275, Mismatches: 63, Indels: 13
0.78 0.18 0.04
Matches are distributed among these distances:
157 15 0.05
158 137 0.50
159 120 0.44
160 3 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCGCTCAG
CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCC
AGCTACCGCAACCCTTGGTCCGGTCTGA
Found at i:32309694 original size:25 final size:26
Alignment explanation
Indices: 32309660--32309711 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
32309650 CCGGTCTAAT
*
32309660 CTTAGACT-GGGAAGAACTCTGTATG
1 CTTAGACTGGGGAAGAACTCCGTATG
*
32309685 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGAAGAACTCCGTATG
32309711 C
1 C
32309712 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 8 0.33
26 16 0.67
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGGAAGAACTCCGTATG
Found at i:32310430 original size:26 final size:26
Alignment explanation
Indices: 32310392--32310444 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
32310382 GGCTCAAAAT
32310392 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
32310418 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
32310444 C
1 C
32310445 CTAAACTAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:32310617 original size:26 final size:27
Alignment explanation
Indices: 32310579--32310633 Score: 76
Period size: 26 Copynumber: 2.1 Consensus size: 27
32310569 GTTCGATCTT
32310579 AGACTAGGAATGAACTCCGTATG-CTA
1 AGACTAGGAATGAACTCCGTATGCCTA
* * *
32310605 AGACTGGGGATGAACTTCGTATGCCTA
1 AGACTAGGAATGAACTCCGTATGCCTA
32310632 AG
1 AG
32310634 TCAACTGACG
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.31, C:0.18, G:0.27, T:0.24
Consensus pattern (27 bp):
AGACTAGGAATGAACTCCGTATGCCTA
Found at i:32311922 original size:26 final size:26
Alignment explanation
Indices: 32311870--32311922 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
32311860 CTGGTTCGAT
*
32311870 CTTAGACTAAGAATGAACTCTGCATG
1 CTTAGACTAAGAATGAACTCCGCATG
* * *
32311896 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAAGAATGAACTCCGCATG
32311922 C
1 C
32311923 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAAGAATGAACTCCGCATG
Found at i:32312617 original size:159 final size:156
Alignment explanation
Indices: 32312262--32312663 Score: 396
Period size: 158 Copynumber: 2.5 Consensus size: 156
32312252 AACTCCATAT
* * * *
32312262 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCATACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGATCGTGCGGGCGCT-AG
* * * * *
32312327 CCGGTCGGAGAGGCAGAATGCACAAGTCGGGGACCGGCCCGATCCCCCCTGCATGCTGTCGATCT
65 CCGGTCGGAGAGGCAGAATGCAC-AGGCAGGGACCGGCCCGATCCCCCCTACATGCTGCCGATCC
* * * *
32312392 TACTACCGCAACCCTCATTTCGATCCGA
129 CACTACCACAACCCTCAGTCCGATCCGA
* ** *
32312420 TCTTAGAC-TGGAAATGAACTCCGTATGCCTAAATCAACCTATGAAACGATCGTGCGGGCGCTGA
1 GCTTAGACATGG-AATGAACTCCGTATGCCTAAGCCAACCCATGAAACGATCGTGCGGGCGCT-A
* * * * * * * *
32312484 GCCGGTCGGAGGGGCATAATTTGCAC-GGCAGGGATCGGCCTGGTCCCCCTTTACGTGCTGCCGG
64 GCCGGTCGGAGAGGCAGAA--TGCACAGGCAGGGACCGGCCCGATCCCCC-CTACATGCTGCCGA
** *
32312548 TCCCACTACCACAACCCTCAGTCCGATTTGG
126 TCCCACTACCACAACCCTCAGTCCGATCCGA
* * ** * *
32312579 GCTTAGACATGGAATTAACTCTGTATGCCTAAGCCAACCCACAAAACGAGT-GTGCGGGCTCTAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGA-TCGTGCGGGCGCTAG
*
32312643 CCGGTCGGAGAGGCAAAATGC
65 CCGGTCGGAGAGGCAGAATGC
32312664 GCAAGCCACG
Statistics
Matches: 197, Mismatches: 41, Indels: 14
0.78 0.16 0.06
Matches are distributed among these distances:
156 3 0.02
157 3 0.02
158 103 0.52
159 79 0.40
160 9 0.05
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.20
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGATCGTGCGGGCGCTAGC
CGGTCGGAGAGGCAGAATGCACAGGCAGGGACCGGCCCGATCCCCCCTACATGCTGCCGATCCCA
CTACCACAACCCTCAGTCCGATCCGA
Found at i:32313136 original size:159 final size:157
Alignment explanation
Indices: 32312775--32313155 Score: 392
Period size: 158 Copynumber: 2.4 Consensus size: 157
32312765 GAACTCGTAT
* * * *
32312775 GCTTATACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAA
** *
32312840 CCGACCAAAGAGGCAGAATGCGCAAGTTGAGGATCAGCCCGATCCCCCCTGCATGCTGTCGATCC
66 CCGACCAAAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCGATCCCCCCTGCATGCCGTCGATCC
* *
32312905 AGCTACCACAACCCTCGGTTCGATCTGA
131 AGCTACCACAACCCTCAGTTC-AGCTGA
* * * * * * *
32312933 TCTTAGA-TTGGGAATGAACTCCGTATGCATAAGTCAACCTATGAAACGAGCGTGCGGGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
* * * * * *
32312997 ACCG-GCAGAAGAGGCATAATGTGCAAGCCGGGGATC-GACCCGGTCCCCCTCTGCGTGCCGTCG
65 ACCGACCA-AAGAGGCAGAATGCGCAAGCCGAGGATCAG-CCCGATCCCCC-CTGCATGCCGTCG
* * * * *
32313060 GTCCCGCTGCCATAACCCTCAGTGT-AGCTAGG
127 ATCCAGCTACCACAACCCTCAGT-TCAGCT-GA
* * * *
32313092 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATGCGGGCACTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
32313156 GTCAGAGAGG
Statistics
Matches: 178, Mismatches: 38, Indels: 13
0.78 0.17 0.06
Matches are distributed among these distances:
157 4 0.02
158 91 0.51
159 81 0.46
160 2 0.01
ACGTcount: A:0.26, C:0.30, G:0.26, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAA
CCGACCAAAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCGATCCCCCCTGCATGCCGTCGATCC
AGCTACCACAACCCTCAGTTCAGCTGA
Found at i:32313150 original size:513 final size:512
Alignment explanation
Indices: 32312059--32313150 Score: 1318
Period size: 513 Copynumber: 2.1 Consensus size: 512
32312049 CCCTTGGTTT
* *
32312059 GACTGGGGCTTAGA-AGTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGG
1 GACTAGGGCTTAGACA-TGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGG
* * * **
32312123 GCTCCCAGCCAGCCGAAGAGGCAGAATGCTCAAGTTGAAGATCGACCCGATCCCCTCTGCATGCT
65 GCTCCCAACCAGCCGAAGAGGCAAAATGCGCAAGTCCAAGATCGACCCGATCCCCTCTGCATGCT
* *
32312188 ATCGATCCTGCTGCTAGTCCTACTGTCGTAACCTTCGATCCGATCTAATCCTAGACTGGGAATGA
130 ATCGATCCTGCTGCTAGTCCTACTGCCGTAACCCTCGATCCGATCTAATCCTAGACTGGGAATGA
* *
32312253 ACTCCATATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCATACG
195 ACTCCATATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCATACA
* ** ** * *
32312318 GGCGCTCAGCCGGTCGGAGAGGCAGAATGCACAAGTCGGGGACCGGCCCGATCCCCCCTGCATGC
260 GGCGCTCAACCGACCAAAGAGGCAGAATGCACAAGTCGAGGACCAGCCCGATCCCCCCTGCATGC
* * *
32312383 TGTCGATCTTACTACCGCAACCCTCATTTCGATCCGATCTTAGACTGGAAATGAACTCCGTATGC
325 TGTCGATCTCACTACCACAACCCTCAGTTCGATCCGATCTTAGACTGGAAATGAACTCCGTATGC
* * * * * * * *
32312448 CTAAATCAACCTATGAAACGATCGTGCGGGCGCTGAGCCGGTCGGAGGGGCATAATTTGCACGGC
390 ATAAATCAACCTATGAAACGAGCGTGCGGGCGCTGAACCGGTCGAAGAGGCATAATGTGCAAGCC
* * * *
32312513 AGGGATCGGCCTGGTCCCCCTTTACGTGCTGCCGGTCCCACTACCACAACCCTCAGTCC
455 AGGGATCGACCCGGTCCCCCTCTACGTGCCGCCGGTCCCACTACCACAACCCTCAGT-C
* * * * ** *
32312572 GATTTGGGCTTAGACATGGAATTAACTCTGTATGCCTAAGCCAACCCACAAAACGAGTGTGCGGG
1 GACTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGG
* * * * * * * *
32312637 CT-CTAACCGGTCGGAGAGGCAAAATGCGCAAG-CCACGGATCGACCCGGTCGCC-CTGCGTGCT
66 CTCCCAACCAGCCGAAGAGGCAAAATGCGCAAGTCCA-AGATCGACCCGATCCCCTCTGCATGCT
* * * * * * * *
32312699 GTCGATCCTGCTACTGGTGGTCTTGCTGCCGTAACCCTCGATCTGATCTGATCTTAGACTGGGAA
130 ATCGATCCTG---CTGCTAGTCCTACTGCCGTAACCCTCGATCCGATCTAATCCTAGACTGGGAA
* * * * *
32312764 TGAACT-CGTATGCTTATACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGT
192 TGAACTCCATATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCAT
* * * *
32312828 GCAGGCGCTCAACCGACCAAAGAGGCAGAATGCGCAAGTTGAGGATCAGCCCGATCCCCCCTGCA
257 ACAGGCGCTCAACCGACCAAAGAGGCAGAATGCACAAGTCGAGGACCAGCCCGATCCCCCCTGCA
* * * *
32312893 TGCTGTCGATC-CAGCTACCACAACCCTCGGTTCGATCTGATCTTAGATTGGGAATGAACTCCGT
322 TGCTGTCGATCTCA-CTACCACAACCCTCAGTTCGATCCGATCTTAGACTGGAAATGAACTCCGT
* *
32312957 ATGCATAAGTCAACCTATGAAACGAGCGTGCGGGTGCTGAACCGG-CAGAAGAGGCATAATGTGC
386 ATGCATAAATCAACCTATGAAACGAGCGTGCGGGCGCTGAACCGGTC-GAAGAGGCATAATGTGC
* * * * * *
32313021 AAGCCGGGGATCGACCCGGTCCCCCTCTGCGTGCCGTCGGTCCCGCTGCCATAACCCTCAGT-
450 AAGCCAGGGATCGACCCGGTCCCCCTCTACGTGCCGCCGGTCCCACTACCACAACCCTCAGTC
* * *
32313083 GTAGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATGCG
1 G-A-CTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCG
32313148 GGC
64 GGC
32313151 ACTCAGTCAG
Statistics
Matches: 484, Mismatches: 86, Indels: 18
0.82 0.15 0.03
Matches are distributed among these distances:
511 19 0.04
512 40 0.08
513 375 0.77
514 50 0.10
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (512 bp):
GACTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGG
CTCCCAACCAGCCGAAGAGGCAAAATGCGCAAGTCCAAGATCGACCCGATCCCCTCTGCATGCTA
TCGATCCTGCTGCTAGTCCTACTGCCGTAACCCTCGATCCGATCTAATCCTAGACTGGGAATGAA
CTCCATATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCATACAG
GCGCTCAACCGACCAAAGAGGCAGAATGCACAAGTCGAGGACCAGCCCGATCCCCCCTGCATGCT
GTCGATCTCACTACCACAACCCTCAGTTCGATCCGATCTTAGACTGGAAATGAACTCCGTATGCA
TAAATCAACCTATGAAACGAGCGTGCGGGCGCTGAACCGGTCGAAGAGGCATAATGTGCAAGCCA
GGGATCGACCCGGTCCCCCTCTACGTGCCGCCGGTCCCACTACCACAACCCTCAGTC
Found at i:32314396 original size:26 final size:26
Alignment explanation
Indices: 32314360--32314412 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
32314350 GTTGGCTTAG
32314360 GCATACGGAGTTCATT-CCACGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
32314386 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
32314412 G
1 G
32314413 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:32315238 original size:26 final size:26
Alignment explanation
Indices: 32315202--32315254 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
32315192 GTTGGCTTAG
32315202 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCAT-TCTAA
32315228 GCATACGGAGTTCATTCCCATTCTAA
1 GCATACGGAGTTCATTCCCATTCTAA
32315254 G
1 G
32315255 ATCGAACTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCATTCTAA
Found at i:32315435 original size:26 final size:26
Alignment explanation
Indices: 32315399--32315451 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
32315389 GTTGGCTTAG
**
32315399 GCATACGAAGTTCATTCCGTGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
32315425 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
32315451 G
1 G
32315452 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:32316507 original size:26 final size:26
Alignment explanation
Indices: 32316461--32316513 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
32316451 GTTGACTTAG
*
32316461 GCATACAAAATTCATCTCCAGTTTAA
1 GCATACAAAATTCATCTCCAGTCTAA
* *
32316487 GCATACGAAGTTCAT-TCCCAGTCTAA
1 GCATACAAAATTCATCT-CCAGTCTAA
32316513 G
1 G
32316514 ATTGGATCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.34, C:0.25, G:0.13, T:0.28
Consensus pattern (26 bp):
GCATACAAAATTCATCTCCAGTCTAA
Found at i:32316843 original size:26 final size:26
Alignment explanation
Indices: 32316805--32316857 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
32316795 GTTGACTTAG
*
32316805 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
*
32316831 GCATAC-AATGTTCATTCCCAATCTAA
1 GCATACGAA-GTTCATCCCCAATCTAA
32316857 G
1 G
32316858 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 2 0.08
26 22 0.92
ACGTcount: A:0.32, C:0.28, G:0.13, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:32317071 original size:343 final size:340
Alignment explanation
Indices: 32316089--32317152 Score: 1161
Period size: 344 Copynumber: 3.1 Consensus size: 340
32316079 GGCTGAACGT
* * *
32316089 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGACTTGATCCCCAGTCTAAGCATA-AGGA
1 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAATTCATCCCCAGTCTAAGCATACA--A
* * * * * ** *
32316153 GTTCATT-CCAGTCTAAGATCAGACCGGACCAAGGGTTGTGGTAGTGGGATCGACAGCACGCAGA
64 GTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGTA-A
* * * * * ** * *
32316217 GGGGGACCAGACCGAACCTCGGCTTACGCATTATGCCTCTTTGGCCAGGA-TAGTGCCCGCACAC
128 GGGGGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGACCA--ACTAGTGCCCGCACGC
* * * *
32316281 CCGGTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTTCATGTCTAAGCCCAAGCC-GAACCAAG
191 CCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAG-ACCGAG
* * * * *
32316345 GGTTGTGGCAGCGAGACTGGCAGCACGCAGAGGGGGATCGGGTCGATCCT-TAGCTTATGCATTA
255 GGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGATCGGGTCGATCCTCGA-CTTCT-CATTA
* *
32316409 TGCCTCTCCGATCGGTTCAGCGC
318 TGCCTCTCCGACCGGCTCAGCGC
* * * * * *
32316432 CCACACGCTCATTTCGTAGGTTGACTTAGGCATACAAAATTCATCTCCAGTTTAAGCATACGAAG
1 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAATTCATCCCCAGTCTAAGCATAC-AAG
* * * *
32316497 TTCATTCCCAGTCTAAGATTGGATCGGACCGAGGGTTACGACAGCAGGATCGACAGCACATAAGG
65 TTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGTAA-G
* * * * *
32316562 GGGGACCGGGTCGATCCCCAGCTTGCGTATTCTGCCTCTCCGACCGACTAAGTGCCCGCACGCCC
129 GGGGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGACCAACT-AGTGCCCGCACGCCC
* * * *
32316627 GTTTCATGGGTTGGCTTAGGTATAGGGAGTTCATTCCATGTCTCAGCCCCAGTCAGACCGAGGGC
193 GTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGT
* * * ** *
32316692 TGTGGCAACGGGACCAACAGCACGCAAAAAGGGATCGGTTCGATCCTCGACTTGCTCATTATGCC
258 TGTGGCAGCGGGACCGACAGCACGCAGAGGGGGATCGGGTCGATCCTCGACTT-CTCATTATGCC
* *
32316757 TCTCCGGCCGGCTCAGTGC
322 TCTCCGACCGGCTCAGCGC
* *
32316776 CTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACAATG
1 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAATTCATCCCCAGTCTAAGCATACAA-G
* * * * * * *
32316841 TTCATTCCCAATCTAAGATCGGATCGGATCGAGGATTGCGGCAACAAGATCGACAGTATGTAAGG
65 TTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGTAAGG
* * * * * *
32316906 GCGACCGGGCCGATCCTCGGCTTGTGCATTCTACCTCTCCGATCAACTGAGCGCCCGTACGCCCG
130 GGGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGACCAACT-AGTGCCCGCACGCCCG
* * *
32316971 TTTCGTGGGTTGGCTAAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCCGCCAGACCGAGGGTT
194 TTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTT
* *
32317036 GTGGCAGCGGGACCGACAGCACGCAGAGGGGGATCGGGTCGATCCCCGACTTACACATTATGCCT
259 GTGGCAGCGGGACCGACAGCACGCAGAGGGGGATCGGGTCGATCCTCGACTT-CTCATTATGCCT
* * *
32317101 CTTCGATCGAG-TTAGCAG-
323 CTCCGACCG-GCTCAGC-GC
* * * *
32317119 CCGCATGCCCGTTTCGTGAGTTGGCTTAGGCATA
1 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
32317153 GGGAGTTCAT
Statistics
Matches: 594, Mismatches: 115, Indels: 24
0.81 0.16 0.03
Matches are distributed among these distances:
342 1 0.00
343 270 0.45
344 319 0.54
345 4 0.01
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.23
Consensus pattern (340 bp):
CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAATTCATCCCCAGTCTAAGCATACAAGT
TCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGTAAGGG
GGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGACCAACTAGTGCCCGCACGCCCGTT
TCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGT
GGCAGCGGGACCGACAGCACGCAGAGGGGGATCGGGTCGATCCTCGACTTCTCATTATGCCTCTC
CGACCGGCTCAGCGC
Found at i:32317142 original size:159 final size:158
Alignment explanation
Indices: 32316964--32317575 Score: 568
Period size: 159 Copynumber: 3.7 Consensus size: 158
32316954 GAGCGCCCGT
* * *
32316964 ACGCCCGTTTCGTGGGTTGGCTAAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCCGCCAGACC
1 ACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACC
* * *
32317029 GAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGATCGGGTCGATCCCCGACTTACACAT
66 GAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGACCAGGTCGATCCCCGACTTACGCAT
32317094 TATGCCTCTTCGATCGAGTTAGCAGCCGC
131 TATGCCTCTTCGATCG-GTTAGCAGCCGC
* * * *
32317123 ATGCCCGTTTCGTGAGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGATC
1 ACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACC
* * * * * * * * *
32317188 GAGGTTTGTTGCAGCAGGACCGACAGCATGAAGAGGGGGATCAGGTCGATCCTCGGCTTGCGCAT
66 GAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGACCAGGTCGATCCCCGACTTACGCAT
* *
32317253 TATGCCTATTCGATCGGTTCAGCACCCGC
131 TATGCCTCTTCGATCGGTT-AGCAGCCGC
* * * * * * ** *
32317282 ACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCCA-GTCTAAGCATACGGAGTTC
1 ACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCAT-TCCATGTCTAAGC---CCCAG-CC
** * ** * * *
32317346 ATTCCCA--GTCTAAGATCAGACCGGACCAAGGGCAGTACAAGCGACAACACGTAGGGGGACCAG
61 AGACCGAGGGT-TGTG-GCAG-CGGGA-C-----C-G-AC-AGC-AC-GCA-G-AGGGGGACCAG
* * *
32317409 GTCGATCCCCGACTTACGTATTCTGCCTCTTCGATCGGCTGAGC-GCCCGC
110 GTCGATCCCCGACTTACGCATTATGCCTCTTCGATCGG-TTAGCAG-CCGC
*
32317459 ACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCAGACC
1 ACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACC
*
32317524 GAGGGTTGTGGTAGCGGGACCGACAGCACGCAGAGGGGGACC-GAGTCGATCC
66 GAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGACCAG-GTCGATCC
32317576 TTGGCTTGCG
Statistics
Matches: 356, Mismatches: 69, Indels: 56
0.74 0.14 0.12
Matches are distributed among these distances:
158 4 0.01
159 195 0.55
160 4 0.01
161 3 0.01
162 6 0.02
163 10 0.03
164 6 0.02
165 2 0.01
166 1 0.00
170 1 0.00
171 2 0.01
172 6 0.02
173 10 0.03
174 6 0.02
175 3 0.01
176 4 0.01
177 92 0.26
178 1 0.00
ACGTcount: A:0.21, C:0.28, G:0.30, T:0.22
Consensus pattern (158 bp):
ACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACC
GAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGACCAGGTCGATCCCCGACTTACGCAT
TATGCCTCTTCGATCGGTTAGCAGCCGC
Found at i:32317258 original size:502 final size:495
Alignment explanation
Indices: 32316617--32317575 Score: 1276
Period size: 502 Copynumber: 1.9 Consensus size: 495
32316607 GACTAAGTGC
* * * *
32316617 CCGCACGCCCGTTTCATGGGTTGGCTTAGGTATAGGGAGTTCATTCCATGTCTCAGCCCCAGTCA
1 CCGCACGCCCGTTTCATGAGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCA
*
32316682 GACCGAGGGCTGTGGCAACGGGACCAACAGCACGCAAAAAGGGATCGGTTCGATCCTCGACTTGC
66 GACCGAGGGCTGTGGCAACAGGACCAACAGCACGCAAAAAGGGATCGGTTCGATCCTCGACTTGC
* * * ** * * *
32316747 TCATTATGCCTCTCCGGCCGGCTCAGTGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
131 GCATTATGCCTATCCGACCGGCTCAGCACCCGCACGCTCATTTCATGGGTTGACTTAGGCATACG
* * * *
32316812 AAGTTCATCCCCAGTCTAAGCATAC-AATGTTCATTCCCAATCTAAGATCGGATCGGATCGAGGA
196 AAGTTCATCCCCAGTCTAAGCATACGAA-GTTCATTCCCAATCTAAGATCAGACCGGACCAAGG-
* ** * * * * **
32316876 TTGCGGCAACAAGATCGACAGTATGTAAGGGCGACCGGGCCGATCCTCGGCTTGTGCATTCTACC
259 --GCAG-AACAAG--CGACAACACGT-AGGGCGACCAGGCCGATCCCCGACTTACGCATTCTACC
* *
32316941 TCTCCGATCAACTGAGCGCCCGTACGCCCGTTTCGTGGGTTGGCTAAGGCATAGGGAGTTCATTC
318 TCTCCGATCAACTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTAAGGCATAGGGAGTTCATTC
* *
32317006 CATGTCTAAGCCCCCGCCAGACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGATC
383 CATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGACC
*
32317071 GGGTCGATCCCCGACTTACACATTATGCCTCTTCGATCGAGTTAGCAG
448 GAGTCGATCCCCGACTTACACATTATGCCTCTTCGATCGAGTTAGCAG
* *
32317119 CCGCATGCCCGTTTCGTGAGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCA
1 CCGCACGCCCGTTTCATGAGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCA
* ** * * * * ** *
32317184 GATCGAGGTTTGTTGCAGCAGGACCGACAGCATG-AAGAGGGGGATCAGG-TCGATCCTCGGCTT
66 GACCGAGGGCTGTGGCAACAGGACCAACAGCACGCAA-AAAGGGATC-GGTTCGATCCTCGACTT
* * *
32317247 GCGCATTATGCCTATTCGATCGGTTCAGCACCCGCACGCTCATTTCATGGGTTGACTTAGGCATA
129 GCGCATTATGCCTATCCGACCGGCTCAGCACCCGCACGCTCATTTCATGGGTTGACTTAGGCATA
* *
32317312 CGAAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGG
194 CGAAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAATCTAAGATCAGACCGGACCAAGG
* * * * * *
32317377 GCAGTACAAGCGACAACACGTAGGGGGACCAGGTCGATCCCCGACTTACGTATTCTGCCTCTTCG
259 GCAGAACAAGCGACAACACGTAGGGCGACCAGGCCGATCCCCGACTTACGCATTCTACCTCTCCG
** *
32317442 ATCGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTC
324 ATCAACTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTAAGGCATAGGGAGTTCATTCCATGTC
* *
32317507 TAAGCCCTAGCCAGACCGAGGGTTGTGGTAGCGGGACCGACAGCACGCAGAGGGGGACCGAGTCG
389 TAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGACCGAGTCG
32317572 ATCC
454 ATCC
32317576 TTGGCTTGCG
Statistics
Matches: 395, Mismatches: 59, Indels: 13
0.85 0.13 0.03
Matches are distributed among these distances:
495 158 0.40
496 8 0.02
498 5 0.01
499 3 0.01
501 2 0.01
502 216 0.55
503 3 0.01
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.22
Consensus pattern (495 bp):
CCGCACGCCCGTTTCATGAGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCA
GACCGAGGGCTGTGGCAACAGGACCAACAGCACGCAAAAAGGGATCGGTTCGATCCTCGACTTGC
GCATTATGCCTATCCGACCGGCTCAGCACCCGCACGCTCATTTCATGGGTTGACTTAGGCATACG
AAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAATCTAAGATCAGACCGGACCAAGGGC
AGAACAAGCGACAACACGTAGGGCGACCAGGCCGATCCCCGACTTACGCATTCTACCTCTCCGAT
CAACTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTAAGGCATAGGGAGTTCATTCCATGTCTA
AGCCCCAGCCAGACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGACCGAGTCGAT
CCCCGACTTACACATTATGCCTCTTCGATCGAGTTAGCAG
Found at i:32317337 original size:26 final size:26
Alignment explanation
Indices: 32317307--32317359 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
32317297 GTTGACTTAG
32317307 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
32317333 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
32317359 G
1 G
32317360 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:32317790 original size:26 final size:26
Alignment explanation
Indices: 32317761--32317813 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
32317751 GTTGGCTTAG
32317761 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
* *
32317787 GCATACGGAGTTCTTTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
32317813 G
1 G
32317814 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:32318524 original size:26 final size:26
Alignment explanation
Indices: 32318487--32318539 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
32318477 GTTGACTTAG
32318487 GCATACAGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
32318513 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
32318539 G
1 G
32318540 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 1 0.04
26 20 0.80
27 4 0.16
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:32319563 original size:162 final size:159
Alignment explanation
Indices: 32319288--32319661 Score: 396
Period size: 162 Copynumber: 2.3 Consensus size: 159
32319278 GCCTCTTCGA
* ** *
32319288 CACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATT-CCTAGTCTAAGATCCGAGCGAA
1 CACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCCT-GTCTAAGATCAGAGCGAA
* * ** *
32319352 CCAAGGGTTACGACAGCGGGATCGATAGCATGCAGAAGGGGATCGGGTCGATC-CTCGGCTTACG
65 CCAAGGGTTACGACAGCAGGATCGACAGCACACAGAAGGGGATCGGGTCGATCTC-CGACTTACG
* *
32319416 CATTATGCCTCTTCGATCGGGAGGCTCAGCACC-
129 CATTATGCCTCTCCGACCGGGAGGCT--GC-CCG
* *
32319449 CGACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCCTGTCTAAGATCAGATCGGA
1 C-ACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCCTGTCTAAGATCAGAGCGAA
* * ** * * * *
32319514 CCGAGGGTTATGGTAGTAGGATTGACAGTACACAGGAA-GGGATCGGGTCGATCTCCGACTTGCG
65 CCAAGGGTTACGACAGCAGGATCGACAGCACACA-GAAGGGGATCGGGTCGATCTCCGACTTACG
* ** *
32319578 CATTCTGCCTCTCCGACCGGTTGGGTGCCCG
129 CATTATGCCTCTCCGACCGGGAGGCTGCCCG
* * * *
32319609 CACACTCGTTTTATGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAG
1 CACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCCTGTCTAAG
32319662 CATACAAAGT
Statistics
Matches: 179, Mismatches: 29, Indels: 12
0.81 0.13 0.05
Matches are distributed among these distances:
159 50 0.28
160 3 0.02
161 1 0.01
162 118 0.66
163 7 0.04
ACGTcount: A:0.21, C:0.24, G:0.29, T:0.26
Consensus pattern (159 bp):
CACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCCTGTCTAAGATCAGAGCGAAC
CAAGGGTTACGACAGCAGGATCGACAGCACACAGAAGGGGATCGGGTCGATCTCCGACTTACGCA
TTATGCCTCTCCGACCGGGAGGCTGCCCG
Found at i:32320053 original size:26 final size:26
Alignment explanation
Indices: 32320003--32320055 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32319993 GTTGACTTAG
*
32320003 GCATACGGAGTTCATCCCGAGTCTAA
1 GCATACGGAGTTCATCCCGAATCTAA
32320029 GCATACGGAGTTCATTCCC-AATCTAA
1 GCATACGGAGTTCA-TCCCGAATCTAA
32320055 G
1 G
32320056 ATCGAATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCGAATCTAA
Found at i:32320058 original size:368 final size:364
Alignment explanation
Indices: 32319604--32320689 Score: 1171
Period size: 377 Copynumber: 2.9 Consensus size: 364
32319594 CCGGTTGGGT
* * * * *
32319604 GCCCGCACACTCGTTTTATGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCATACAA
1 GCCCACACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATCCCA-GTCTAAGCATACAA
* *
32319669 AGTTCATTCCCAGTCTAAGATCATATTGGACCGAGGGTTGCGGTAGTAAGACCAGCAGCAAGATC
65 AGTTCATTCCCAGTCTAAGATCA-ATCGGACCGAGGGTTACGGTAG-AAGACCAGCAGCAAGATC
* * * * * * *
32319734 GACAGCACGCAAAGAG-GGATCGGGCCGATCCTCGACTTATGAATTTTGCCTCTCTGGTCGGCTG
128 GACAGCACGC-AAG-GTGGACCGGGCCGATCC-CGACTTACGCATTCTGCCTCTCCGATCAGCTG
** * * *
32319798 AACAG-CCACACGCTTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCC
190 -AGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCC
* * *
32319862 CAGCCTGACCAAGGGTTGTGGCAGCAGGACTGGCAGC-GGTAAAGGGGGATTGGGCTGATCCCCG
254 CAGCCAGACCAAGGGTTGTGGCAGCAGGACTGGCAGCAGGTAGAGGGGGATTGGGCTGATCCCTG
* * *
32319926 ACTTACGCATTATGCCTCTTCGAATGACCTCT-TCGGTCGGCTGAGC
319 GCTTACGCATTATGCCTCTTCGAACGACCTCTCT-GGTCGACTGAGC
* * **
32319972 GCCCATACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCGAGTCTAAGCATACGG
1 GCCCACACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATCCC-AGTCTAAGCATACAA
* * * *
32320037 AGTTCATTCCCAATCTAAGATCGAATCGGACCGAGGGTTACGGCAG-A-ACCAGCAAC-AGCATT
65 AGTTCATTCCCAGTCTAAGATC-AATCGGACCGAGGGTTACGGTAGAAGACCAGCAGCAAG-ATC
* * * * * *
32320099 GGCAGCACGCAGGGTGGACCGAGCCAATCCCTAGCTTGCGCATTCTGCCTCTCCGATCAGCTGAG
128 GACAGCACGCAAGGTGGACCGGGCCGATCCCGA-CTTACGCATTCTGCCTCTCCGATCAGCTGAG
* * *
32320164 TGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCGTAAAGAGTTCATTCCATGTCTAAGCCCCAG
192 TGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAG
* * * * * *
32320229 CCAAACCGAGGGTTGTGGTAGCAGGACCAGCAGCGGGATCGACAGCACGTAGAGGGGGATCGAGC
257 CCAGACCAAGGGTTGTGGCAGCAGGA-CTG--GC---A--G-CAG---GTAGAGGGGGATTGGGC
* * * * *
32320294 TGATCCCTGGCTTATGCATTATGCCACTTCGGACGTCCTCTCTGGTCGATTGAGC
310 TGATCCCTGGCTTACGCATTATGCCTCTTCGAACGACCTCTCTGGTCGACTGAGC
* *
32320349 GCCCACACGCTCATTTCATGGGTTGACTTAGGCATATGGAGTGCATCCTCAGTCTAAGCATACAA
1 GCCCACACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATCC-CAGTCTAAGCATACAA
* * * * * *
32320414 AGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGATACGATAGCAAGACCAGCAGCAGGATC
65 AGTTCATTCCCAGTCTAAGATC-AATCGGACCGAGGGTTACGGTAG-AAGACCAGCAGCAAGATC
* * * * * *
32320479 GACAGCATGCATGGTGGACCAGGTCGATCCCTGGCTTACGCATTCTGCCTCTCCGATCTGCTGAG
128 GACAGCACGCAAGGTGGACCGGGCCGATCCC-GACTTACGCATTCTGCCTCTCCGATCAGCTGAG
32320544 TGCCCGCACG-TCCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCA
192 TGCCCGCACGCT-CGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCA
** * ** * * *
32320608 GCCAGACCAAGGGTTGTGGCAGTGGGACTGACAGCACATAGAGGGGGACTAGGCCGATCCCTGGC
256 GCCAGACCAAGGGTTGTGGCAGCAGGACTGGCAGCAGGTAGAGGGGGATTGGGCTGATCCCTGGC
*
32320673 TTGCGCATTATGCCTCT
321 TTACGCATTATGCCTCT
32320690 CCGATCGGCT
Statistics
Matches: 591, Mismatches: 100, Indels: 54
0.79 0.13 0.07
Matches are distributed among these distances:
363 5 0.01
364 116 0.20
365 21 0.04
366 1 0.00
367 2 0.00
368 130 0.22
369 2 0.00
370 1 0.00
371 2 0.00
372 2 0.00
373 1 0.00
374 2 0.00
377 155 0.26
378 2 0.00
379 3 0.01
380 145 0.25
381 1 0.00
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.23
Consensus pattern (364 bp):
GCCCACACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATCCCAGTCTAAGCATACAAA
GTTCATTCCCAGTCTAAGATCAATCGGACCGAGGGTTACGGTAGAAGACCAGCAGCAAGATCGAC
AGCACGCAAGGTGGACCGGGCCGATCCCGACTTACGCATTCTGCCTCTCCGATCAGCTGAGTGCC
CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGCCAG
ACCAAGGGTTGTGGCAGCAGGACTGGCAGCAGGTAGAGGGGGATTGGGCTGATCCCTGGCTTACG
CATTATGCCTCTTCGAACGACCTCTCTGGTCGACTGAGC
Found at i:32320922 original size:26 final size:26
Alignment explanation
Indices: 32320893--32320945 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32320883 ATTGGCTTAG
*
32320893 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGAAGTTCATTCCTA-GTCTAA
32320919 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCTAGTCTAA
32320945 G
1 G
32320946 ATCTGATTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCTAGTCTAA
Found at i:32321688 original size:24 final size:24
Alignment explanation
Indices: 32321650--32321705 Score: 85
Period size: 24 Copynumber: 2.3 Consensus size: 24
32321640 CCGAGGGTTG
*
32321650 TGGCAGCAGGACCGACAGTGGGAT
1 TGGCAGCAGGACCGACAGCGGGAT
* *
32321674 TGGTAGCAGGGCCGACAGCGGGAT
1 TGGCAGCAGGACCGACAGCGGGAT
32321698 TGGCAGCA
1 TGGCAGCA
32321706 CACAGAGGGG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.23, C:0.21, G:0.43, T:0.12
Consensus pattern (24 bp):
TGGCAGCAGGACCGACAGCGGGAT
Found at i:32321849 original size:26 final size:26
Alignment explanation
Indices: 32321813--32321862 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
32321803 GACTTAGGCG
*
32321813 TACGAAGTTCATCCCCAGTCTAAGCA
1 TACGAAGTTCATCCCCAGCCTAAGCA
* *
32321839 TACGGAGTTCATTCCCAGCCTAAG
1 TACGAAGTTCATCCCCAGCCTAAG
32321863 ATCGGACCGG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.28, C:0.30, G:0.18, T:0.24
Consensus pattern (26 bp):
TACGAAGTTCATCCCCAGCCTAAGCA
Found at i:32322739 original size:26 final size:26
Alignment explanation
Indices: 32322710--32322761 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
32322700 TTGACTTAGC
*
32322710 CATACGGAGTTCATCCCCAATCTAAG
1 CATACAGAGTTCATCCCCAATCTAAG
* * *
32322736 CATACAGATTTCATTCCCAGTCTAAG
1 CATACAGAGTTCATCCCCAATCTAAG
32322762 ATCGGACCAG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (26 bp):
CATACAGAGTTCATCCCCAATCTAAG
Found at i:32324943 original size:159 final size:157
Alignment explanation
Indices: 32324560--32324943 Score: 448
Period size: 159 Copynumber: 2.4 Consensus size: 157
32324550 CCTAGTCTAA
** ** * *
32324560 GCATACGGAGTTCATTCCCGGTCTAAG-ATTGGATCGGATCGAGGGTTGTGGCAGCAAGATCGAC
1 GCATACGGAGTTCATTCCATGTCTAAGCCCT--ATCGGACCGAGGGTTGTGGCAGCAGGATCGAC
* * * * * * * *
32324624 AGCACGTAAGACAGATCGGGTCGATCCCTGGCTTGCGCATTCTACCTCTCCGGCCGGCTGAATGC
64 AGCACGCAAGACAGACCGAGCCGATCCCTAGCTTGCGCATTATACCTCTCCGGCCGGCTCAACGC
32324689 CCGCACACCCGTTTCATGGGTTGGCTTAG
129 CCGCACACCCGTTTCATGGGTTGGCTTAG
* * * *
32324718 GCATAGGGAGTTCATTCCATGTCTAAGCCCTATCCGGACCGAGGGTTGTGGTAGCGGGATCAACA
1 GCATACGGAGTTCATTCCATGTCTAAGCCCTAT-CGGACCGAGGGTTGTGGCAGCAGGATCGACA
*** * * *
32324783 GCACGCAGAGGTGGACCGAGCCGATGCCC-AGCTTGCGCATTATGCCTCTCCGGCTGGCTCAGCG
65 GCACGCA-AGACAGACCGAGCCGAT-CCCTAGCTTGCGCATTATACCTCTCCGGCCGGCTCAACG
* *
32324847 CCCTCACACTCGTTTCATGGGTTGGCTTAG
128 CCCGCACACCCGTTTCATGGGTTGGCTTAG
* *
32324877 GCATACGGAGTTCATTCCATGTCTAAGCCCCTGTCGGACCGAGGGTTGTGGCAGCAGGACCGACA
1 GCATACGGAGTTCATTCCATGTCTAAG-CCCTATCGGACCGAGGGTTGTGGCAGCAGGATCGACA
32324942 GC
65 GC
32324944 GGGATCGGTA
Statistics
Matches: 189, Mismatches: 32, Indels: 9
0.82 0.14 0.04
Matches are distributed among these distances:
157 2 0.01
158 56 0.30
159 123 0.65
160 8 0.04
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.22
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGCCCTATCGGACCGAGGGTTGTGGCAGCAGGATCGACAG
CACGCAAGACAGACCGAGCCGATCCCTAGCTTGCGCATTATACCTCTCCGGCCGGCTCAACGCCC
GCACACCCGTTTCATGGGTTGGCTTAG
Found at i:32325091 original size:26 final size:26
Alignment explanation
Indices: 32325061--32325112 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
32325051 TTGACTTAAA
32325061 CATACGGAGTTCATCCCCAGTCTAAG
1 CATACGGAGTTCATCCCCAGTCTAAG
*
32325087 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATCCCCAGTCTAAG
32325113 ATCAAATCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAGTCTAAG
Found at i:32325493 original size:237 final size:237
Alignment explanation
Indices: 32325077--32325534 Score: 589
Period size: 237 Copynumber: 1.9 Consensus size: 237
32325067 GAGTTCATCC
* * * * *
32325077 CCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAATCGAACCGAGGGTTGCAACAGTA
1 CCAGTCTAAGCATACAGAGTTCATTCCCAGCCTAAGATCAAACCGAACCAAGGGTTGCAACAGCA
* * * * ** * * *
32325142 GGATCGACAGTACGTAGGGGGGATTGGGCCGATCCGTGACTTATGCATTCTGTCTCTCCAGCCGG
66 GGATCGACAGCACGCAAGGGGGACTGGGCCGATCCCCGACATACGCATTCTGCCTCTCCAGCCGG
* * *
32325207 CTGAGCGCCCGCACGCCTGTTTCATGAGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
131 CTGAGCGCCCGCACACCCGTTTCATGAGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
** *
32325272 CCCAGCTGGATCGAGGGTTGTGGCAGCAGGACTGACAGCGGA
196 CCCAGCCAGACCGAGGGTTGTGGCAGCAGGACTGACAGCGGA
* * ***
32325314 CCAGTCTATGCATACAGAGTTCATTCCCAGCCTAAGATCGAACC-AGACCAAGGGTTGCGGTAGC
1 CCAGTCTAAGCATACAGAGTTCATTCCCAGCCTAAGATCAAACCGA-ACCAAGGGTTGCAACAGC
* * *
32325378 AGGATCGATAGCACGCAAGGGGGACCT-GGCCGATCCCCGGCATACGCATTCTGCCTCTCC-GAT
65 AGGATCGACAGCACGCAAGGGGGA-CTGGGCCGATCCCCGACATACGCATTCTGCCTCTCCAG-C
* * *
32325441 CGGTTGAGCGCCCGCACACCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
128 CGGCTGAGCGCCCGCACACCCGTTTCATGAGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
32325506 AGCCCCAGCCAGACCGAGGGTTGTGGCAG
193 AGCCCCAGCCAGACCGAGGGTTGTGGCAG
32325535 TGAGACCGAT
Statistics
Matches: 187, Mismatches: 31, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
236 2 0.01
237 184 0.98
238 1 0.01
ACGTcount: A:0.22, C:0.27, G:0.29, T:0.22
Consensus pattern (237 bp):
CCAGTCTAAGCATACAGAGTTCATTCCCAGCCTAAGATCAAACCGAACCAAGGGTTGCAACAGCA
GGATCGACAGCACGCAAGGGGGACTGGGCCGATCCCCGACATACGCATTCTGCCTCTCCAGCCGG
CTGAGCGCCCGCACACCCGTTTCATGAGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
CCCAGCCAGACCGAGGGTTGTGGCAGCAGGACTGACAGCGGA
Found at i:32325676 original size:26 final size:26
Alignment explanation
Indices: 32325640--32325692 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
32325630 GTTGACTTAT
* *
32325640 GCATATGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
32325666 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
32325692 G
1 G
32325693 ATTTTTAGCC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:32325784 original size:11 final size:11
Alignment explanation
Indices: 32325768--32325794 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
32325758 GCACCATCGC
32325768 CAGAGCATAGT
1 CAGAGCATAGT
32325779 CAGAGCATAGT
1 CAGAGCATAGT
32325790 CAGAG
1 CAGAG
32325795 AGCCTAATCG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.37, C:0.19, G:0.30, T:0.15
Consensus pattern (11 bp):
CAGAGCATAGT
Found at i:32326130 original size:25 final size:26
Alignment explanation
Indices: 32326080--32326131 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
32326070 GTTGACTTAG
*
32326080 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAATTCATCCCCAGTCTAA
*
32326106 GCATACGAAATTCAT-CCCATTCTAA
1 GCATACGAAATTCATCCCCAGTCTAA
32326131 G
1 G
32326132 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 10 0.42
26 14 0.58
ACGTcount: A:0.33, C:0.29, G:0.13, T:0.25
Consensus pattern (26 bp):
GCATACGAAATTCATCCCCAGTCTAA
Found at i:32326698 original size:356 final size:355
Alignment explanation
Indices: 32326030--32326699 Score: 777
Period size: 356 Copynumber: 1.9 Consensus size: 355
32326020 GCGCATCCCG
* * * * *
32326030 CCTCTCTGGTCGACTGAGCGCTCGTACACCCGTTTTGTGGGTTGACTTAGGCATACGAAGTTCAT
1 CCTCTCTGATCGACTGAGCGCCCGCACACCCGTTTCGTGGGTTGACTTAGGCATACAAAGTTCAT
* * * **
32326095 CCCCAGTCTAAGCATACGAAATTCATCCCATTCTAAGATCAGACCGGACTAAGGTTTGCAGTAGC
66 CCCCAGTCTAAGCATACGAAATTCATCCCAGTCTAAGATCAGACCGGACTAACGATTGCAACAGC
* * * *
32326160 AGGATCGACAGCATGCAGGGGGGACTGAGCCGATCCTCGACTTGCGCATTCTGCCTCTCCGGCCA
131 AGGATCGACAGCACGCAGGGGGCACCGAGCCGATCCTCGACTTGCGCATTCTGCCTCTCCGACCA
* * * * *
32326225 ATTGAGCGCCCGCACGTTCATTTCGTGGGTTCGCTTAGGCATACAGAATTCATTGCACGTCTAAG
196 ATTGAGCACCCACACATCCATTTCGTGGGTTCGCTTAGGCATACAGAATTCATTCCACGTCTAAG
* * * ** * *
32326290 CCCCAACTGGACCGAGTGTTGTGGCAGCAGGACCGGCAGCACGCAAAGGGGGACCACGCTGATCC
261 CCCCAACCGGACAGAGGGTTGTGGCAGCAGGACCAACAACACACAAAGGGGGACCACGCTGATCC
32326355 CCGACTTGCTCATTATGCCTCTCCGACTGA
326 CCGACTTGCTCATTATGCCTCTCCGACTGA
* *
32326385 CCTCTTTGATCGACTGAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACAAAGTTCAT
1 CCTCTCTGATCGACTGAGCGCCCGCACACCCGTTTCGTGGGTTGACTTAGGCATACAAAGTTCAT
* * * * * *
32326450 CCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACTGGA-TCGACGATTGCAACA
66 CCCCAGTCTAAGCATACGAAATTCA-TCCCAGTCTAAGATCAGACCGGACT-AACGATTGCAACA
* ** * ** * *
32326514 GCAGGATCGATAGCACGTTGGGGGCACCGGGTTGATTCCT-GGCTTGTGCATTCTGCCTCTCCGA
129 GCAGGATCGACAGCACGCAGGGGGCACCGAGCCGA-TCCTCGACTTGCGCATTCTGCCTCTCCGA
* ** ** * * ** * *
32326578 TCGGTTGATTACCCACACATCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCT
193 CCAATTGAGCACCCACACATCCATTTCGTGGGTTCGCTTAGGCATACAGAATTCATTCCACGTCT
* * * **
32326643 AAGCCCTAGCCGGACAGAGGGTTGTGGCAGCGGGACCAACAACACACTGAGGGGGAC
258 AAGCCCCAACCGGACAGAGGGTTGTGGCAGCAGGACCAACAACACACAAAGGGGGAC
32326700 TGGGCCGATC
Statistics
Matches: 254, Mismatches: 58, Indels: 5
0.80 0.18 0.02
Matches are distributed among these distances:
355 81 0.32
356 169 0.67
357 4 0.02
ACGTcount: A:0.21, C:0.28, G:0.27, T:0.24
Consensus pattern (355 bp):
CCTCTCTGATCGACTGAGCGCCCGCACACCCGTTTCGTGGGTTGACTTAGGCATACAAAGTTCAT
CCCCAGTCTAAGCATACGAAATTCATCCCAGTCTAAGATCAGACCGGACTAACGATTGCAACAGC
AGGATCGACAGCACGCAGGGGGCACCGAGCCGATCCTCGACTTGCGCATTCTGCCTCTCCGACCA
ATTGAGCACCCACACATCCATTTCGTGGGTTCGCTTAGGCATACAGAATTCATTCCACGTCTAAG
CCCCAACCGGACAGAGGGTTGTGGCAGCAGGACCAACAACACACAAAGGGGGACCACGCTGATCC
CCGACTTGCTCATTATGCCTCTCCGACTGA
Found at i:32328435 original size:26 final size:26
Alignment explanation
Indices: 32328397--32328448 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
32328387 GGCTCAAAAT
32328397 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
32328423 CTTAGACAT-GGAATGAACTTCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
32328449 GCTAAGCCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:32328927 original size:25 final size:26
Alignment explanation
Indices: 32328899--32328950 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
32328889 CCGATCTGAT
*
32328899 CTTAGA-TTGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
32328924 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
32328950 C
1 C
32328951 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 6 0.24
26 19 0.76
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:32329300 original size:26 final size:26
Alignment explanation
Indices: 32329259--32329318 Score: 70
Period size: 26 Copynumber: 2.4 Consensus size: 26
32329249 CCTCAGTCTG
*
32329259 ATCCG-AT-CTTAGACTGGGAATGAA
1 ATCCGTATGCTTAAACTGGGAATGAA
*
32329283 ATCCGTATGCTTAAACTGGGGATGAA
1 ATCCGTATGCTTAAACTGGGAATGAA
* *
32329309 CTCTGTATGC
1 ATCCGTATGC
32329319 CTAAGTCAAC
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
24 5 0.17
25 2 0.07
26 23 0.77
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.28
Consensus pattern (26 bp):
ATCCGTATGCTTAAACTGGGAATGAA
Found at i:32330020 original size:26 final size:26
Alignment explanation
Indices: 32329990--32330041 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
32329980 GCTCAAAATA
32329990 TTAGAC-TGGGAATGAACTCCATATGC
1 TTAGACAT-GGAATGAACTCCATATGC
*
32330016 TTAGACATGGAATGAACTCCGTATGC
1 TTAGACATGGAATGAACTCCATATGC
32330042 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (26 bp):
TTAGACATGGAATGAACTCCATATGC
Found at i:32330545 original size:26 final size:27
Alignment explanation
Indices: 32330497--32330551 Score: 76
Period size: 26 Copynumber: 2.1 Consensus size: 27
32330487 ATCCGATCTT
32330497 AGACTGGGAATGAACTCCATATG-CTA
1 AGACTGGGAATGAACTCCATATGCCTA
* **
32330523 AGACTGGGGATGAACTCTGTATGCCTA
1 AGACTGGGAATGAACTCCATATGCCTA
32330550 AG
1 AG
32330552 CCAACCCATG
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.31, C:0.18, G:0.27, T:0.24
Consensus pattern (27 bp):
AGACTGGGAATGAACTCCATATGCCTA
Found at i:32332094 original size:26 final size:26
Alignment explanation
Indices: 32332044--32332096 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
32332034 CTGGTTCAAT
**
32332044 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
32332070 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
32332096 C
1 C
32332097 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:32332455 original size:26 final size:26
Alignment explanation
Indices: 32332413--32332465 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32332403 CTAGTCTGAT
*
32332413 CTTAGACTGGGATTGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
32332439 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
32332465 C
1 C
32332466 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:32332786 original size:26 final size:26
Alignment explanation
Indices: 32332756--32332808 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
32332746 CCGATCTGTT
*
32332756 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
32332782 CTTAGGCTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
32332808 C
1 C
32332809 CTAACTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.23, C:0.19, G:0.30, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:32333830 original size:26 final size:26
Alignment explanation
Indices: 32333801--32333853 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32333791 CCGATCCGAT
32333801 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGA-TAGGGAATGAACTCCGTATG
*
32333827 CTTAGATATGGAATGAACTCCGTATG
1 CTTAGATAGGGAATGAACTCCGTATG
32333853 C
1 C
32333854 CTAAGCTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGATAGGGAATGAACTCCGTATG
Found at i:32339777 original size:25 final size:26
Alignment explanation
Indices: 32339729--32339780 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
32339719 CCAGTTTGAT
*
32339729 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
32339755 CTTAGACTGGG-ATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
32339780 C
1 C
32339781 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 14 0.56
26 11 0.44
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:32341427 original size:11 final size:11
Alignment explanation
Indices: 32341411--32341445 Score: 70
Period size: 11 Copynumber: 3.2 Consensus size: 11
32341401 CGGTTAGGCT
32341411 CTCCGACGATG
1 CTCCGACGATG
32341422 CTCCGACGATG
1 CTCCGACGATG
32341433 CTCCGACGATG
1 CTCCGACGATG
32341444 CT
1 CT
32341446 TCAGTGATGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.17, C:0.37, G:0.26, T:0.20
Consensus pattern (11 bp):
CTCCGACGATG
Found at i:32342919 original size:26 final size:26
Alignment explanation
Indices: 32342881--32342930 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
32342871 GTTGGATCTT
*
32342881 AGACTGGGAATGAACTTTGTATGCTG
1 AGACTGGGAATGAACTTCGTATGCTG
*
32342907 AGACTGGGGATGAACTTCGTATGC
1 AGACTGGGAATGAACTTCGTATGC
32342931 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.14, G:0.32, T:0.28
Consensus pattern (26 bp):
AGACTGGGAATGAACTTCGTATGCTG
Found at i:32343047 original size:184 final size:184
Alignment explanation
Indices: 32342732--32343188 Score: 529
Period size: 184 Copynumber: 2.5 Consensus size: 184
32342722 TAGACATGGA
* * * ** * **
32342732 ATGAAC-TCTGTATGCCTAAGCCAACCTACGAAACGAAAGTTCGGGCGCTCAACTTGCCGGAGAG
1 ATGAACTTC-GTATGCCTAAGTCAACCCAAGAAACGAGCGTGCGGGCGCTCAACCGGCCGGAGAG
* * ** * * * * *
32342796 GCAGAATGCGCAAGCAGGGGATCGGCTCGGTCCCCCCTATGTGTTGTTGATCCTGCTGTCACAAC
65 GCAGAATGCGCAAGCAGGGGATCGACCCAATCCCCCCTACGTGCTATCGATCCTGCTGCCACAAC
*** *
32342861 CCTCGGTCCAGTTGGATCTTAGACTGGGAATGAACTTTGTATGCTGAGACTGGGG
130 CCTCGGTCCAGTCCAATCTTAGACTGGGAATGAACTCTGTATGCTGAGACTGGGG
*
32342916 ATGAACTTCGTATGCCTAAGTCAACCCAAGAAATGAGCGTGCGGGCGCTCAACCGGCCGGAGAGG
1 ATGAACTTCGTATGCCTAAGTCAACCCAAGAAACGAGCGTGCGGGCGCTCAACCGGCCGGAGAGG
* * * * *
32342981 CAGAATACGCAAGCCGAGGATCGACCCAATCCCCCCTGCGTGCTATCGATCCTGCTGCCGCAACC
66 CAGAATGCGCAAGCAGGGGATCGACCCAATCCCCCCTACGTGCTATCGATCCTGCTGCCACAACC
*** * *
32343046 CTCGGTTTGGTCCAATCTTAGACTGGTAATGAACTCTGTATGCTTAGACTGGGG
131 CTCGGTCCAGTCCAATCTTAGACTGGGAATGAACTCTGTATGCTGAGACTGGGG
* * * * **
32343100 ATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTCAGCCGATCGGAGAGG
1 ATGAACTTCGTATGCCTAAGTCAACCCAAGAAACGAGCGTGCGGGCGCTCAACCGGCCGGAGAGG
* * *
32343165 TAGGATGCGCAAGCTGGGGATCGA
66 CAGAATGCGCAAGCAGGGGATCGA
32343189 ACAGGTAGTA
Statistics
Matches: 228, Mismatches: 44, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
184 226 0.99
185 2 0.01
ACGTcount: A:0.24, C:0.26, G:0.29, T:0.21
Consensus pattern (184 bp):
ATGAACTTCGTATGCCTAAGTCAACCCAAGAAACGAGCGTGCGGGCGCTCAACCGGCCGGAGAGG
CAGAATGCGCAAGCAGGGGATCGACCCAATCCCCCCTACGTGCTATCGATCCTGCTGCCACAACC
CTCGGTCCAGTCCAATCTTAGACTGGGAATGAACTCTGTATGCTGAGACTGGGG
Found at i:32343103 original size:26 final size:26
Alignment explanation
Indices: 32343062--32343114 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
32343052 TTGGTCCAAT
* *
32343062 CTTAGACTGGTAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
32343088 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
32343114 C
1 C
32343115 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:32344271 original size:26 final size:26
Alignment explanation
Indices: 32344242--32344292 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
32344232 TTGATCCGAT
*
32344242 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
32344268 CTTAGGCTGGGGATGAACTCTGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
32344293 TCCTAAGTAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.24, C:0.16, G:0.29, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:32344702 original size:159 final size:158
Alignment explanation
Indices: 32344411--32344758 Score: 367
Period size: 159 Copynumber: 2.2 Consensus size: 158
32344401 CTGTAGATCT
* * * * *
32344411 TGCTGTCGGTCCTGCTGCCACAACCCTCTGTCCGGCTAGGGCTTAGACATGGAATGAATTCCGTA
1 TGCTGTCGGTCCTGCTACCACAACCCTCGGTCCGACTAGGGCTTAGACATGGAATGAACTCCCTA
* * ** * * * **
32344476 TGCCTAAGCCAACCCACAAAATGAGCGTGCCGACACTGAGTTGGTCGGAGAGGCATAATGCGTAA
66 TGCCTAAGCCAACCCACAAAATGAGCGTGCCGACACTCAGTCGACCGAAAAGGCAGAATGCACAA
32344541 GCC-AGGGATCAACCTGGTCCCCCTCTGCA
131 GCCGA-GGATCAACCTGGTCCCCC-CTGCA
* * * *
32344570 TGCTGTCGGTCCCGCTACCACAACCCTCGGTTCGACTGGGGCTTAGACATGGAATGAGCTCCCTA
1 TGCTGTCGGTCCTGCTACCACAACCCTCGGTCCGACTAGGGCTTAGACATGGAATGAACTCCCTA
** * * * *
32344635 TGCCTAAGCCAACCCATGAAAT-AGGCGTGCGGGCGCTCAGTCGACCGAAAAGGTAGAATGCACA
66 TGCCTAAGCCAACCCACAAAATGA-GCGTGCCGACACTCAGTCGACCGAAAAGGCAGAATGCACA
** * *
32344699 AGCCGAGGATCGGCCTGGTTCCCCCTGCG
130 AGCCGAGGATCAACCTGGTCCCCCCTGCA
* * **
32344728 TGCTGTCGATCCTGCTATCGTAACCCTCGGT
1 TGCTGTCGGTCCTGCTACCACAACCCTCGGT
32344759 GCGGTCCGAT
Statistics
Matches: 154, Mismatches: 33, Indels: 5
0.80 0.17 0.03
Matches are distributed among these distances:
158 31 0.20
159 122 0.79
160 1 0.01
ACGTcount: A:0.22, C:0.30, G:0.27, T:0.21
Consensus pattern (158 bp):
TGCTGTCGGTCCTGCTACCACAACCCTCGGTCCGACTAGGGCTTAGACATGGAATGAACTCCCTA
TGCCTAAGCCAACCCACAAAATGAGCGTGCCGACACTCAGTCGACCGAAAAGGCAGAATGCACAA
GCCGAGGATCAACCTGGTCCCCCCTGCA
Found at i:32344805 original size:26 final size:26
Alignment explanation
Indices: 32344769--32344821 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
32344759 GCGGTCCGAT
* *
32344769 CTTAGAGTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATAAACTCCATATG
* *
32344795 CTTAGACTGGGGATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCATATG
32344821 C
1 C
32344822 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCATATG
Found at i:32345148 original size:26 final size:26
Alignment explanation
Indices: 32345119--32345171 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
32345109 CCGGTCTGAT
32345119 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
32345145 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
32345171 C
1 C
32345172 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Done.