Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 353 of 402
Found at i:32345153 original size:350 final size:341
Alignment explanation
Indices: 32344470--32345207 Score: 912
Period size: 350 Copynumber: 2.1 Consensus size: 341
32344460 TGGAATGAAT
* * * * * * ***
32344470 TCCGTATGCCTAAGCCAACCCACAAAATGAGCGTGCCGACACTGAGTTGGTCGGAGAGGCATAAT
1 TCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAACCGGTCGGAGAGGCATAAT
* *
32344535 GCGTAAGCCAGGGATCAACCTGGTCCCCCTCTGCATGCTGTCGGTCCCGCTACCACAACCCTCGG
66 GCGCAAGCCAGGGATCAACCCGGTCCCCCTCTGCATGCTGTCGGTCCCGCTACCACAACCCTCGG
* * * *
32344600 TTCGACTGGGGCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCATGAAATAGGCGTGC
131 TTCGACTAGGGCTTAGAAATGGAATGAACTCCCTATGCCTAAGCCAACCCATG-AATA-GCGTAC
* * * * *
32344665 GGGCGCTCAGTCGACCGAAAAGGTAGAATGCACAAGCCGAGGATCGGCCTGGTTCCCCCTGCGTG
194 GGGCGCTCAGCCGACCGAAAAGGTAGAATGCACAAGCAGAGGATCGGCCCGATCCCCCCTGCGTG
* * * *
32344730 CTGTCGATCCTGCTATCGTAACCCTCGGTGCGGTCCGATCTTAGAGTGGGAATGAACTCCATATG
259 CTGTCGATCCTGCTATCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCATATG
32344795 CTTAGACTGGGGATAAAC
324 CTTAGACTGGGGATAAAC
*
32344813 TCCGTATGCCTAAGTCAACCCACAAAACGAGCGTACGGGCGCTCAACCGGTCGGAGAGGCATAAT
1 TCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAACCGGTCGGAGAGGCATAAT
* *
32344878 GCGCAAGCCAGGGATCAACCCGGTCCCCCTCTGCATGCTGCCGATCCTGTTACCGGTCCTGCTGC
66 GCGCAAGCCAGGGATCAACCCGGTCCCCCTCTGCA---T---G---CTG-T--CGGTCCCGCTAC
* * *
32344943 TACAACCCTCGG-TCTGACTAGGGTTTAGAAATGGAATGAACTCCGTATGCCTAAGCCAACCCAT
119 CACAACCCTCGGTTC-GACTAGGGCTTAGAAATGGAATGAACTCCCTATGCCTAAGCCAACCCAT
* * * ** *
32345007 G-A-A-CGTACGGGGGCTCAGCCGACCGGAGAGGTAGAATGCGTAAGTCAG-GGATTGGCCCGAT
183 GAATAGCGTACGGGCGCTCAGCCGACCGAAAAGGTAGAATGCACAAG-CAGAGGATCGGCCCGAT
*
32345068 CCCCCCTGCGTGCTGTCGATCCTGCTA-CGGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAA
247 CCCCCCTGCGTGCTGTCGATCCTGCTATC-GCAACCCTCGATCCGGTCCGATCTTAGACTGGGAA
* *
32345132 TGAACTCCGTATGCTTAGACTGGGGATGAAC
311 TGAACTCCATATGCTTAGACTGGGGATAAAC
* *
32345163 TCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCA
1 TCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCA
32345208 GTCGACCATA
Statistics
Matches: 338, Mismatches: 42, Indels: 23
0.84 0.10 0.06
Matches are distributed among these distances:
343 88 0.26
346 1 0.00
349 2 0.01
350 171 0.51
351 2 0.01
352 4 0.01
353 2 0.01
354 2 0.01
355 66 0.20
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (341 bp):
TCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAACCGGTCGGAGAGGCATAAT
GCGCAAGCCAGGGATCAACCCGGTCCCCCTCTGCATGCTGTCGGTCCCGCTACCACAACCCTCGG
TTCGACTAGGGCTTAGAAATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAATAGCGTACGG
GCGCTCAGCCGACCGAAAAGGTAGAATGCACAAGCAGAGGATCGGCCCGATCCCCCCTGCGTGCT
GTCGATCCTGCTATCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCT
TAGACTGGGGATAAAC
Found at i:32348362 original size:26 final size:26
Alignment explanation
Indices: 32348326--32348378 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
32348316 TTCGGCCGAT
32348326 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
32348352 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
32348378 C
1 C
32348379 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:32348730 original size:26 final size:26
Alignment explanation
Indices: 32348693--32348745 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
32348683 CTGGTCTGAT
* *
32348693 CTTAGACTTGGAATGAACTTCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
32348719 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
32348745 C
1 C
32348746 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:32349053 original size:159 final size:159
Alignment explanation
Indices: 32348856--32349219 Score: 375
Period size: 159 Copynumber: 2.3 Consensus size: 159
32348846 CCTGCTACCG
* * * * *
32348856 CAACCCTCGGTCTGGTCTGATCTTAGATTGGGAATGAACTTCGTATGCATAAGCTAACCTACGAA
1 CAACCCTCGGTCTGGTCTGAGCTTAGAATGGGAATGAACTTCCTATGCATAAGCCAACCCACGAA
** * * * *
32348921 ATGAGCGAGCGGGCGTTGAGCC-ATCCAAAGAGGCATAATGCGCAAGCCGAGAATTGACCCGATC
66 ATGAGCGAGCGGGCACTCAGCCGAT-CAAAAAGGCAGAATGCGCAAGCCGAGAATCGACCCGATC
32348985 CCCCTCTGTGTGCTGCCGATCCCACTTCCA
130 CCCCTCTGTGTGCTGCCGATCCCACTTCCA
* *
32349015 CAACCCTCGGTCTGG-CTGGGGCTTAGACAT-GGAATGAACTTCCTATGCCTAAGCCAACCCACG
1 CAACCCTCGGTCTGGTCT-GAGCTTAGA-ATGGGAATGAACTTCCTATGCATAAGCCAACCCACG
* * * * * *
32349078 AAATGGGCGTGCGGGCACTCAGCCGGTCAAAAAGGTAGAATGCGCAAGCCGAGGATCGGCCCGAT
64 AAATGAGCGAGCGGGCACTCAGCCGATCAAAAAGGCAGAATGCGCAAGCCGAGAATCGACCCGAT
** * *
32349143 CCCCCTAC---GTGCTATCGATCCTACTGT-CG
129 CCCCCT-CTGTGTGCTGCCGATCCCACT-TCCA
* * * *
32349172 TAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAAC-TCCATATGC
1 CAACCCTCGGTCTGGTCTGAGCTTAGAATGGGAATGAACTTCC-TATGC
32349220 TTAGACTGGG
Statistics
Matches: 169, Mismatches: 28, Indels: 18
0.79 0.13 0.08
Matches are distributed among these distances:
156 4 0.02
157 49 0.29
158 5 0.03
159 108 0.64
160 3 0.02
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (159 bp):
CAACCCTCGGTCTGGTCTGAGCTTAGAATGGGAATGAACTTCCTATGCATAAGCCAACCCACGAA
ATGAGCGAGCGGGCACTCAGCCGATCAAAAAGGCAGAATGCGCAAGCCGAGAATCGACCCGATCC
CCCTCTGTGTGCTGCCGATCCCACTTCCA
Found at i:32349229 original size:26 final size:26
Alignment explanation
Indices: 32349193--32349245 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
32349183 CCGGTCTGAT
32349193 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
32349219 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
32349245 C
1 C
32349246 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:32350302 original size:159 final size:156
Alignment explanation
Indices: 32349939--32350440 Score: 456
Period size: 159 Copynumber: 3.2 Consensus size: 156
32349929 AACTTCGTAT
* * * *
32349939 GCTTAGACATGGATTGAACTCCGTATGCCTAAGCCAACTCACGAAACGAGGGTGCAGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGC-GGCGCTCAG
* * * * * *
32350004 TCGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCAGCCCGGTCCCCCCTATG--TGCTATCAAT
65 CCGGTCGGAGAGGCAGAATGCGTAAGTCGGGGATCAGCCCGGT-CCCCCT-TGCATGCTGTCGAT
* * *
32350067 CCTGCTGCCACAACCCTTGGTCCGGTCGA
128 CCCGCTGCCACAACCCTCGGTCCGCTCGA
* * ** * *
32350096 TCTTAGAC-TGGGAATGAACTCCGTATGCATAAATCAACCCATGAAACGAGCGTGCGCGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCG-GCGCTCA
* ** * * *
32350160 GCCGGCCAAAGAGGCATAATGCGTAAGTCGGGGATCGGCCCGGTCCCCCTTTGCATGCTGTCGGT
64 GCCGGTCGGAGAGGCAGAATGCGTAAGTCGGGGATCAGCCCGGTCCCCC-TTGCATGCTGTCGAT
** * *
32350225 CCCGCTGCCATTACCCTCGGTCCGACTGGG
128 CCCGCTGCCACAACCCTCGGTCCG-CTCGA
* * * *
32350255 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGTAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTG-CGGCGCTCAG
* * * *
32350320 CCAGTCGGAGAGGCAGAATGCGTAAGTCGGGGATCAGCCTGATCCCTCC-TGCATGCTGTCGATG
65 CCGGTCGGAGAGGCAGAATGCGTAAGTCGGGGATCAGCCCGGTCCC-CCTTGCATGCTGTCGATC
* * * ** * *
32350384 CTGCTCCCGCAACAATTGGTCCAGTTCGA
129 CCGCTGCCACAACCCTCGGTCC-GCTCGA
* *
32350413 TCTTAGAC-TGAGAATGAACTCTGTATGC
1 GCTTAGACATG-GAATGAACTCCGTATGC
32350441 TTAGACTGGA
Statistics
Matches: 271, Mismatches: 63, Indels: 21
0.76 0.18 0.06
Matches are distributed among these distances:
156 9 0.03
157 88 0.32
158 78 0.29
159 92 0.34
160 4 0.01
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.20
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGCGCTCAGC
CGGTCGGAGAGGCAGAATGCGTAAGTCGGGGATCAGCCCGGTCCCCCTTGCATGCTGTCGATCCC
GCTGCCACAACCCTCGGTCCGCTCGA
Found at i:32350455 original size:26 final size:26
Alignment explanation
Indices: 32350414--32350466 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
32350404 CCAGTTCGAT
32350414 CTTAGACTGAGAATGAACTCTGTATG
1 CTTAGACTGAGAATGAACTCTGTATG
32350440 CTTAGACTG-GAGATGAACTCTGTATG
1 CTTAGACTGAGA-ATGAACTCTGTATG
32350466 C
1 C
32350467 CTAAGTCAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 2 0.08
26 24 0.92
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCTGTATG
Found at i:32351595 original size:26 final size:26
Alignment explanation
Indices: 32351566--32351618 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
32351556 CCGGTCTGAT
*
32351566 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
32351592 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
32351618 C
1 C
32351619 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:32351950 original size:26 final size:26
Alignment explanation
Indices: 32351921--32351973 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
32351911 CTGATCTGAT
* *
32351921 CTTAGACTGGAAATGAACTCTGTATG
1 CTTAGACAGGAAATGAACTCCGTATG
*
32351947 CTTAGACAGGGAATGAACTCCGTATG
1 CTTAGACAGGAAATGAACTCCGTATG
32351973 C
1 C
32351974 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACAGGAAATGAACTCCGTATG
Found at i:32352075 original size:184 final size:184
Alignment explanation
Indices: 32351762--32352131 Score: 427
Period size: 184 Copynumber: 2.0 Consensus size: 184
32351752 TTCGGCTGGG
* * *
32351762 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACAGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCGCTCAG
* * ** * *
32351827 CCGACTGGAGAGGTAGAATACACAAGCCGAGGATCGATCCGATCCCTTCTGCATGCTGTCGATCC
66 CCGACCGGAGAGGCAGAATACACAAGCCGAGGATCGATCCGATCCCCCCTACATGCTATCGATCC
* * ** *
32351892 TACTACTGCAACCCTCAATCTGATCTGATCTTAGACTGGAAATGAACTCTGTAT
131 TACTACCGCAACCCTCAATCCGATCCAATCTTAGACTGGAAATGAACTCCGTAT
* * * *
32351946 GCTTAGACAGGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAATGAGCGTATGGGCGCTTAG
1 GCTTAGACAGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCGCTCAG
** *** * * *
32352011 TTGACCGGAGAGGCAGAATGTTCAAGCCGGGGATCGA-CTTGATCCCCCCTACGTGCTATCGATC
66 CCGACCGGAGAGGCAGAATACACAAGCCGAGGATCGATC-CGATCCCCCCTACATGCTATCGATC
* * * ** * *
32352075 CTGCTGCCGTAACCCTCGGTCCGATCCAATCTTAGATTGGGAATGAACTCCGTAT
130 CTACTACCGCAACCCTCAATCCGATCCAATCTTAGACTGGAAATGAACTCCGTAT
32352130 GC
1 GC
32352132 CTAAGTCAAC
Statistics
Matches: 152, Mismatches: 33, Indels: 2
0.81 0.18 0.01
Matches are distributed among these distances:
183 1 0.01
184 151 0.99
ACGTcount: A:0.26, C:0.27, G:0.25, T:0.22
Consensus pattern (184 bp):
GCTTAGACAGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCGCTCAG
CCGACCGGAGAGGCAGAATACACAAGCCGAGGATCGATCCGATCCCCCCTACATGCTATCGATCC
TACTACCGCAACCCTCAATCCGATCCAATCTTAGACTGGAAATGAACTCCGTAT
Found at i:32353182 original size:26 final size:26
Alignment explanation
Indices: 32353144--32353196 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32353134 GGCTCAAAAT
32353144 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
*
32353170 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCATATG
32353196 C
1 C
32353197 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:32353524 original size:159 final size:158
Alignment explanation
Indices: 32353169--32353526 Score: 380
Period size: 158 Copynumber: 2.3 Consensus size: 158
32353159 AACTCCATAT
* * *
32353169 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAACGTGCGAGCACTCAA
** * * * * **
32353234 TTGGCCGGAGAGGTAGAATGCGCAAGCCAGGGATCAACCCGGTCCCCCCTGCATGCTTTCGATCC
66 CCGACCGGAGAGGCAGAATGCGCAAGCCAAGGAGCAACCCGGTCCCCCCTGCATGCTGCCGATCC
** ** *
32353299 TGCTTGCATGACCCTCGGTCCGATCTGA
131 TGCTACCACAACCCTCAGTCCGATCTGA
* * * * * * *
32353327 TCTTAGACTAT-GAATGAACTTCGTATGCATAAGTCAACCCACAAAACGAGCGTGCGAGCGCTGA
1 GCTTAGAC-ATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAACGTGCGAGCACTCA
* * * * * *
32353391 ACCGACC-TATGAGGCATAATGCGCAAGCCAATGAGCGACCCGGTCCCCCTCTGCGTGCTGCCGG
65 ACCGACCGGA-GAGGCAGAATGCGCAAGCCAAGGAGCAACCCGGTCCCCC-CTGCATGCTGCCGA
*
32353455 TCCTGCTACCACAACCCTCAGTCCGA-CTGGG
128 TCCTGCTACCACAACCCTCAGTCCGATCT-GA
*
32353486 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA
32353527 TGAAACATGC
Statistics
Matches: 160, Mismatches: 35, Indels: 9
0.78 0.17 0.04
Matches are distributed among these distances:
157 1 0.01
158 92 0.57
159 67 0.42
ACGTcount: A:0.25, C:0.32, G:0.24, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAACGTGCGAGCACTCAA
CCGACCGGAGAGGCAGAATGCGCAAGCCAAGGAGCAACCCGGTCCCCCCTGCATGCTGCCGATCC
TGCTACCACAACCCTCAGTCCGATCTGA
Found at i:32353689 original size:26 final size:26
Alignment explanation
Indices: 32353645--32353694 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
32353635 CCGGTTTGAT
*
32353645 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATCAACTTCGTATG
32353671 CTTAGACT-GGAGATCAACTTCGTA
1 CTTAGACTGGGA-ATCAACTTCGTA
32353695 CACCTAAGTC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 3 0.14
26 19 0.86
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTTCGTATG
Found at i:32354200 original size:26 final size:26
Alignment explanation
Indices: 32354159--32354211 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
32354149 CCGGTCCGAT
*
32354159 CTTAGACTAGGAATGAACTTTGTATG
1 CTTAGACTAGGAATGAACTTCGTATG
* *
32354185 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTTCGTATG
32354211 C
1 C
32354212 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTTCGTATG
Found at i:32355413 original size:26 final size:26
Alignment explanation
Indices: 32355384--32355436 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
32355374 CCGATCCGAT
32355384 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
** *
32355410 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
32355436 C
1 C
32355437 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:32355802 original size:26 final size:26
Alignment explanation
Indices: 32355751--32355803 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
32355741 CCCATCCAAT
* **
32355751 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAAACTAGGAATGAACTCCATATG
*
32355777 CTTAAACTTGGAATGAACTCCATATG
1 CTTAAACTAGGAATGAACTCCATATG
32355803 C
1 C
32355804 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.30
Consensus pattern (26 bp):
CTTAAACTAGGAATGAACTCCATATG
Found at i:32356997 original size:26 final size:26
Alignment explanation
Indices: 32356957--32357009 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
32356947 GGCTCAAAAT
32356957 CTTAGACTGGTAATGAACTCCGTATG
1 CTTAGACTGGTAATGAACTCCGTATG
32356983 CTTAGACATGG-AATGAACTCCGTATG
1 CTTAGAC-TGGTAATGAACTCCGTATG
32357009 C
1 C
32357010 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGTAATGAACTCCGTATG
Found at i:32357284 original size:158 final size:155
Alignment explanation
Indices: 32356983--32357483 Score: 494
Period size: 158 Copynumber: 3.2 Consensus size: 155
32356973 ACTCCGTATG
*
32356983 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG-
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * ** * **
32357047 CAGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCTTGGTCCCCCCCTACGTG-CTGTCGAT
66 CA--CCGAAAAGGCAGAATGCGCAAGCCGAGGATC-GCCCGGTCCCCCTCT--GTGTCTACCGAT
* *
32357111 CCTGCTACCACAACCCTCAGTCTGGTCTGAT
126 CCTACTGCCACAACCCTCAGTC-GGTCTGAT
* * * * *
32357142 CTTAGAC-TGGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGCGTGCGGGCGTTGAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * *
32357206 CATCCGAAAAGGCATAATGCGCAAGCCGAGAATCAGCCCGGTCCTCCTCTGTGTAATACCGATCC
66 CA-CCGAAAAGGCAGAATGCGCAAGCCGAGGATC-GCCCGGTCCCCCTCTGTGT-CTACCGATCC
* * * * * **
32357271 CACTGCCATAACCCTCGGTCCGACTGGGG
128 TACTGCCACAACCCTCAGTCGGTCT-GAT
* * *
32357300 CTTAGACATGGAATGAACTTCC-TATGCCTAAGCCAACCCACAAAACGGGCGTGCGGGTGCTCAG
1 CTTAGACATGGAATGAAC-TCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * *
32357364 CCGACCGAAAAGGTAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCTAC-GTG-CTACCGATC
65 CC-ACCGAAAAGGCAGAATGCGCAAGCCGAGGATCG-CCCGGTCCCCCT-CTGTGTCTACCGATC
* *
32357427 CTACTGCCACAACCCTCAGTCCGATCTAAT
127 CTACTGCCACAACCCTCAGT-CGGTCTGAT
*
32357457 CTTAGA-TTGGGAATGAACTCCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
32357484 TTAGACTGGG
Statistics
Matches: 277, Mismatches: 53, Indels: 26
0.78 0.15 0.07
Matches are distributed among these distances:
156 7 0.03
157 48 0.17
158 122 0.44
159 95 0.34
160 5 0.02
ACGTcount: A:0.25, C:0.31, G:0.25, T:0.19
Consensus pattern (155 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CACCGAAAAGGCAGAATGCGCAAGCCGAGGATCGCCCGGTCCCCCTCTGTGTCTACCGATCCTAC
TGCCACAACCCTCAGTCGGTCTGAT
Found at i:32357486 original size:26 final size:26
Alignment explanation
Indices: 32357457--32357509 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
32357447 CCGATCTAAT
*
32357457 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
32357483 CTTAGACTGGGGATGCACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
32357509 C
1 C
32357510 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:32358244 original size:26 final size:26
Alignment explanation
Indices: 32358193--32358248 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
32358183 GGCTCAAAAT
* **
32358193 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACACCATATG
32358219 CTTAGACAT-GGAATGAACACCATATG
1 CTTAGAC-TGGGAATGAACACCATATG
32358245 CTTA
1 CTTA
32358249 AGCCAACCCA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACCATATG
Found at i:32358634 original size:159 final size:157
Alignment explanation
Indices: 32358211--32358656 Score: 378
Period size: 159 Copynumber: 2.8 Consensus size: 157
32358201 GGGAATGAAC
* * * ** *
32358211 TCTGTATGCTTAGACATGGAATGAACACCATATGCTTAAGCCAACCCACGAAACAAACGTACGGG
1 TCTG-ATGCTTAGAC-TGGAATGAACTCCATATGCATAAGCCAACCCATGAAACAGGCGTGCGGG
* * * * ** ** **
32358276 CGCTCA-ACGAGTCGGAGAGACAGAATGCGCAAGTCGAGGATCGGTTCAATCCCCCCAGCGTGCT
64 TGCTCAGCCGA--CCGAGAGGCAGAATGCGCAAGTCGAGGATCGGCCCGGTCCCCCTTGCGTGCT
** * ***
32358340 GTCGATCCTGCTCCCACAAACCTTGGTCCGG
127 GTCGATCCCACTACCACAAACCGCAGTCCGG
* ** * *
32358371 TCTGAT-CTTAGACTGGGAATAAACTCTGTATGCATAAGTCAACCCATGAAAC-GAGCGTGTGGG
1 TCTGATGCTTAGACT-GGAATGAACTCCATATGCATAAGCCAACCCATGAAACAG-GCGTGCGGG
* * * * * * * * *
32358434 TGCTGAGCTGGCCGAAAAGGCATAATGCACAAGCCGGGGATCGACCCGGTCCCCCTTTGCGTGCT
64 TGCTCAGCCGACCG-AGAGGCAGAATGCGCAAGTCGAGGATCGGCCCGGTCCCCC-TTGCGTGCT
* *
32358499 GTCGGTCCCACTACCACAACCCGCAGTCCGG
127 GTCGATCCCACTACCACAAACCGCAGTCCGG
* * *
32358530 -CTGGTGCTTAGACGTGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAGGCGTGCGGGT
1 TCTGATGCTTAGAC-TGGAATGAACTCCATATGCATAAGCCAACCCATGAAACAGGCGTGCGGGT
* * *
32358594 GCTCAGCCGACCTGAGAGGCAGAATGTGCAAGTCGAGGATCGGCCTGGTCCCTCTTGCGTGCT
65 GCTCAGCCGACC-GAGAGGCAGAATGCGCAAGTCGAGGATCGGCCCGGTCCCCCTTGCGTGCT
32358657 ACCGATCTTA
Statistics
Matches: 220, Mismatches: 57, Indels: 20
0.74 0.19 0.07
Matches are distributed among these distances:
157 3 0.01
158 89 0.40
159 121 0.55
160 7 0.03
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (157 bp):
TCTGATGCTTAGACTGGAATGAACTCCATATGCATAAGCCAACCCATGAAACAGGCGTGCGGGTG
CTCAGCCGACCGAGAGGCAGAATGCGCAAGTCGAGGATCGGCCCGGTCCCCCTTGCGTGCTGTCG
ATCCCACTACCACAAACCGCAGTCCGG
Found at i:32358744 original size:25 final size:26
Alignment explanation
Indices: 32358694--32358745 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
32358684 TCGGTCTGAT
*
32358694 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
32358720 CTTAGACTGGGGAT-AACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
32358745 C
1 C
32358746 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 11 0.46
26 13 0.54
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:32360227 original size:26 final size:25
Alignment explanation
Indices: 32360198--32360249 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 25
32360188 CCGGTCCGAT
32360198 CTTAGAC-TAGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCC-TATG
32360224 CTTAGACATGGAATGAACTCCTATG
1 CTTAGACATGGAATGAACTCCTATG
32360249 C
1 C
32360250 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 5 0.20
26 19 0.76
27 1 0.04
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (25 bp):
CTTAGACATGGAATGAACTCCTATG
Found at i:32360729 original size:159 final size:159
Alignment explanation
Indices: 32360223--32360810 Score: 539
Period size: 159 Copynumber: 3.7 Consensus size: 159
32360213 AACTCCGTAT
* * *
32360223 GCTTAGACATGGAATGAACT-CCTATGCCTAAGCCAACCCACGAAATGAGCGTGTGGGCGCGAAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTAAG
* ** * * * * * * *
32360287 CCGACCGGAGAGGCATAATGCGCAAGCAGGGGATCGACCCAGTCCCTCTCTTCGTGCTGTCGGTC
66 CCGACCTGAGAGGCATAATGCGCAAGCCTGGGATCGGCTCGGTCCCCCACTACGTGCTGCCGGTC
* * * *
32360352 CCACTACCACAACCCTCGATCTGGCTGGG
131 CTACTACCACAACCCTCGGTCCGTCTGGG
* *
32360381 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGC-GACTGCTCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGC-GCT-A
** * * * ** *
32360445 A-CCG-GTTAGAGAGGCAGAATGCGCAAG-CTGGAGATTGGCTCGAT-CCCCACTGTGTGCTACC
64 AGCCGACCT-GAGAGGCATAATGCGCAAGCCTGG-GATCGGCTCGGTCCCCCACTACGTGCTGCC
** * * * *
32360506 AATCCTACTATCGCAACCCTCGGTTCGGTCT-GA
127 GGTCCTACTACCACAACCCTCGG-TCCGTCTGGG
* * * * * * * *
32360539 TCTTGGA-TTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGTTTA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTAA
* * *
32360603 GCTGACCTGAGAGGCATAATGCGTAAGCCTAGGATCGGCTCGGTCCCCCACTACGTGCTGCCGGT
65 GCCGACCTGAGAGGCATAATGCGCAAGCCTGGGATCGGCTCGGTCCCCCACTACGTGCTGCCGGT
* *
32360668 CCTACTACCACAACCCTTGGTCCATCTGGG
130 CCTACTACCACAACCCTCGGTCCGTCTGGG
* * * *
32360698 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTAAG
* * * * *
32360763 CCGACC-GAAAAGGCAGAATGCGTAAGTC-GGAGATCGGCCCGGTCCCCC
66 CCGACCTG-AGAGGCATAATGCGCAAGCCTGG-GATCGGCTCGGTCCCCC
32360811 TGCGTGCTGT
Statistics
Matches: 337, Mismatches: 77, Indels: 31
0.76 0.17 0.07
Matches are distributed among these distances:
157 2 0.01
158 137 0.41
159 195 0.58
160 3 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTAAG
CCGACCTGAGAGGCATAATGCGCAAGCCTGGGATCGGCTCGGTCCCCCACTACGTGCTGCCGGTC
CTACTACCACAACCCTCGGTCCGTCTGGG
Found at i:32360897 original size:26 final size:26
Alignment explanation
Indices: 32360856--32360908 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32360846 CTAGTCTGAT
32360856 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
32360882 CTTAGACTGGTG-ATGAACTCTGTATG
1 CTTAGACTGG-GAATGAACTCCGTATG
32360908 C
1 C
32360909 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:32361617 original size:26 final size:26
Alignment explanation
Indices: 32361579--32361631 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32361569 GGCTCAAAAT
*
32361579 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
32361605 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
32361631 C
1 C
32361632 CTAGGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:32362290 original size:184 final size:184
Alignment explanation
Indices: 32361921--32362290 Score: 401
Period size: 184 Copynumber: 2.0 Consensus size: 184
32361911 TCCGGCTGGG
* * *
32361921 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCAATGAAACGGACGTGTGGGAGCTCAG
1 GCTTAAACATGGAATGAACTCCCTATGCCTAAGCCAACCAACGAAACGGACGTGCGGGAGCTCAG
* * * * *
32361986 TCGACCGGAGAGGCAGAATGCGTAAGCTGGAGATCAGCTCGATCCCCCCTGCGTGCTATCGATCC
66 TCGACCGGAGAGGCAAAATGCGCAAGCCGGAGATCAGCCCGATCCCCCCTGCGTGCTATCAATCC
* * ** * * * * *
32362051 TGCTGCTGCAACCCTCGGTTCGATTCGATCTTAGATTGGGAATTAACTTCGTAT
131 TACTGCAGCAACCCTCAATCCGATTCGATCTTAGACTCGGAATGAACTCCGTAT
* * *
32362105 GCTTAAACATGGAATGAAC-GCCTATGCCTAAGCCAACCCACGAAAC-GAGCGTGCGGGTGCTCA
1 GCTTAAACATGGAATGAACTCCCTATGCCTAAGCCAACCAACGAAACGGA-CGTGCGGGAGCTCA
* * * *
32362168 GTC-AGCTGGAGAGGCAAAATGCGCAAGCCGGGGATC-GACCC-AGTCCCCCCCTGTGTGCTGTC
65 GTCGA-CCGGAGAGGCAAAATGCGCAAGCCGGAGATCAG-CCCGA-T-CCCCCCTGCGTGCTATC
* * *
32362230 AATCTTACTGCAGTAACCCTCAATCCG-GTCTGATCTTAGACTCGGAATGAACTCCGTAT
126 AATCCTACTGCAGCAACCCTCAATCCGATTC-GATCTTAGACTCGGAATGAACTCCGTAT
32362289 GC
1 GC
32362291 CTAAGTCAAT
Statistics
Matches: 153, Mismatches: 27, Indels: 12
0.80 0.14 0.06
Matches are distributed among these distances:
182 5 0.03
183 70 0.46
184 78 0.51
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.22
Consensus pattern (184 bp):
GCTTAAACATGGAATGAACTCCCTATGCCTAAGCCAACCAACGAAACGGACGTGCGGGAGCTCAG
TCGACCGGAGAGGCAAAATGCGCAAGCCGGAGATCAGCCCGATCCCCCCTGCGTGCTATCAATCC
TACTGCAGCAACCCTCAATCCGATTCGATCTTAGACTCGGAATGAACTCCGTAT
Found at i:32362524 original size:501 final size:501
Alignment explanation
Indices: 32361577--32362661 Score: 1261
Period size: 501 Copynumber: 2.2 Consensus size: 501
32361567 GTGGCTCAAA
* * *
32361577 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCATATGCCTAGGCCAAC
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAAACATGGAATGAACGCCATATGCCTAAGCCAAC
* * ** * * * *
32361642 CCATGAAACGATCGTGCGAACGCTTTGCCGCCCGGAGAGGTAGAATGCGCAAGTCGGGGATCAGC
66 CCACGAAACGAGCGTGCGAACGCTCAGCAGCCCGGAGAGGCAAAATGCGCAAGCCGGGGATCAGC
** * * * * ** * *
32361707 CTGGTCCTCCTTGCGTGCTGTCGATCCTACTGCCGTAACCCTCGGTCTGATCTGATCTTAGACTG
131 CCAGTCCCCCCTGCGTGCTGTCAATCCTACTGCAGTAACCCTCAATCCGATCTGATCTTAGACTC
* * * *
32361772 GGAATTAACTCCGTATACATAAGTCAACCCACGAAACGAGTGTACGGGCGTTGAGCTGGCTGAAG
196 GGAATGAACTCCGTATACATAAGTCAACCCACGAAACGAGTGTACGGGCGCTGAGCTGACCGAAG
* *
32361837 AGGCATAATGCACAAGCCAGGGATCGACCCGATCCCCCTCTGCGTGCTGTCGGTCCCACTGACAC
261 AGGCATAATGCACAAGCCAGGGATCGACCCGATCCCCCTCTGCCTGCTATCGGTCCCACTGACAC
* *
32361902 AACCCTCAGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCAATGAAA
326 AACCCTCAGTCCGGCTGGGGCTTAGACATGGAATGAACTCACTATGCCTAAGCCAACCAACGAAA
* * * * * * *
32361967 CGGACGTGTGGGAGCTCAGTCGACCGGAGAGGCAGAATGCGTAAGCTGGAGATCAGCTCGATCCC
391 CGGACGTGCGGGAGCTCAGTCGACCGAAGACGCAGAAAGCGCAAGCCGGAGATCAGCCCGATCCC
*
32362032 CCCTGCGTGCTATCGATCCTGCTG-CTGCAACCCTCGGTTCGATTCG
456 CCCTACGTGCTATCGATCCTGCTGTC-GCAACCCTCGGTTCGATTCG
* * *
32362078 ATCTTAGATTGGGAATTAACTTCGTATGCTTAAACATGGAATGAACGCC-TATGCCTAAGCCAAC
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAAACATGGAATGAACGCCATATGCCTAAGCCAAC
*** *
32362142 CCACGAAACGAGCGTGCGGGTGCTCAGTCAG-CTGGAGAGGCAAAATGCGCAAGCCGGGGATC-G
66 CCACGAAACGAGCGTGCGAACGCTCAG-CAGCCCGGAGAGGCAAAATGCGCAAGCCGGGGATCAG
* * *
32362205 ACCCAGTCCCCCCCTGTGTGCTGTCAATCTTACTGCAGTAACCCTCAATCCGGTCTGATCTTAGA
130 -CCCAGT-CCCCCCTGCGTGCTGTCAATCCTACTGCAGTAACCCTCAATCCGATCTGATCTTAGA
* * * *
32362270 CTCGGAATGAACTCCGTATGCCTAAGTCAATCCACGAAACGAGTGTGCGGGCGCTGAGCTGACCG
193 CTCGGAATGAACTCCGTATACATAAGTCAACCCACGAAACGAGTGTACGGGCGCTGAGCTGACCG
* * * * * *
32362335 GAGAGGTATAATGCGCAAGCC-GAGGATCGGCCCGGTCCCCTTCTGCCTGCTATCGGTCCCACTG
258 AAGAGGCATAATGCACAAGCCAG-GGATCGACCCGATCCCCCTCTGCCTGCTATCGGTCCCACTG
* * * * * *
32362399 CCACAACTCTCGGTCTGGCTGGGGCTTAGGCATGGAATGAACTCACTATGCCTAAGCCAACCCAC
322 ACACAACCCTCAGTCCGGCTGGGGCTTAGACATGGAATGAACTCACTATGCCTAAGCCAACCAAC
* *
32362464 GAAACTGG-CGTGCGGGCA-CTCAGTCGACCGAAGACGTAGAAAGCGCAAGCCGGGGATCAGCCC
387 GAAAC-GGACGTGCGGG-AGCTCAGTCGACCGAAGACGCAGAAAGCGCAAGCCGGAGATCAGCCC
** * * * * * *
32362527 GATCTTCCTTATGTGCTATCGATCTTGCTGTCGCAACCCTC-GATCCAGTCCG
450 GATCCCCCCTACGTGCTATCGATCCTGCTGTCGCAACCCTCGGTTCGA-TTCG
* * * * * ** * * * *
32362579 ATCTTATACTAGGAATGAGCTCCGGATGCTTAGAC-TGGGTGTGAACTCCGTATGCTTAAGTCAA
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAAACAT-GGAATGAACGCCATATGCCTAAGCCAA
*
32362643 CCCATGAAACGAGCGTGCG
65 CCCACGAAACGAGCGTGCG
32362662 GGGTCTCAGC
Statistics
Matches: 487, Mismatches: 87, Indels: 19
0.82 0.15 0.03
Matches are distributed among these distances:
499 1 0.00
500 71 0.15
501 381 0.78
502 34 0.07
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (501 bp):
ATCTTAGACTGGGAATGAACTCCGTATGCTTAAACATGGAATGAACGCCATATGCCTAAGCCAAC
CCACGAAACGAGCGTGCGAACGCTCAGCAGCCCGGAGAGGCAAAATGCGCAAGCCGGGGATCAGC
CCAGTCCCCCCTGCGTGCTGTCAATCCTACTGCAGTAACCCTCAATCCGATCTGATCTTAGACTC
GGAATGAACTCCGTATACATAAGTCAACCCACGAAACGAGTGTACGGGCGCTGAGCTGACCGAAG
AGGCATAATGCACAAGCCAGGGATCGACCCGATCCCCCTCTGCCTGCTATCGGTCCCACTGACAC
AACCCTCAGTCCGGCTGGGGCTTAGACATGGAATGAACTCACTATGCCTAAGCCAACCAACGAAA
CGGACGTGCGGGAGCTCAGTCGACCGAAGACGCAGAAAGCGCAAGCCGGAGATCAGCCCGATCCC
CCCTACGTGCTATCGATCCTGCTGTCGCAACCCTCGGTTCGATTCG
Found at i:32362989 original size:26 final size:26
Alignment explanation
Indices: 32362960--32363037 Score: 149
Period size: 26 Copynumber: 3.0 Consensus size: 26
32362950 CCGATCTAAT
32362960 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
32362986 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
32363012 CTTAGACATGGAATGAACTCC-TATG
1 CTTAGACATGGAATGAACTCCGTATG
32363037 C
1 C
32363038 CTAAGCCAAC
Statistics
Matches: 52, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
25 5 0.10
26 47 0.90
ACGTcount: A:0.31, C:0.21, G:0.22, T:0.27
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:32363358 original size:159 final size:156
Alignment explanation
Indices: 32363011--32363511 Score: 530
Period size: 158 Copynumber: 3.2 Consensus size: 156
32363001 AACTCCGTAT
* *
32363011 GCTTAGACATGGAATGAACT-CCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTTAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGCGCTCAG
* * * * * *
32363075 CTGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATTGGCCTGGTCCCCCCTGCATGCTATCGATCC
66 C-GGTCGAAGAGGCAGAATGCGCAAG-CAGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCC
*
32363140 TGCTGCCACAACCCTCAGTCCAGTCTGA
129 TGCTGCCACAACCCTCAGTCCAGGCTGA
* * * * * * *
32363168 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCATCCCACGAAACGAGCGTGTGGGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGCGCTCA
* * * *
32363232 GTCGATCGAAGAGGCATAATACGCAAGCTAGGGATCGGCCCGATCCCCCTCTGCGTGCTGTCGGT
65 G-CGGTCGAAGAGGCAGAATGCGCAAGC-AGGGATCGGCCCGATCCCCC-CTGCGTGCTGTCGAT
** ** *
32363297 CCCACTGCCACAACCCTCAGT-TTGGCTGGG
127 CCTGCTGCCACAACCCTCAGTCCAGGCT-GA
* *
32363327 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAA-G-GGGTGTACGGGCACTC
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGT--GGGCGCTC
* * * *
32363390 AGCCGGCCGAAGAGGTAGAATGTGCAAGCCGAGGATCGGCCCGATCCCCCCTGCGTGCTGTCGAT
64 AG-CGGTCGAAGAGGCAGAATGCGCAAGCAG-GGATCGGCCCGATCCCCCCTGCGTGCTGTCGAT
*
32363455 CCTGCTACCACAACCCTCAGTCC-GGTCTGA
127 CCTGCTGCCACAACCCTCAGTCCAGG-CTGA
* *
32363485 TCTTAGAC-TGGGAATGAACTCCATATG
1 GCTTAGACAT-GGAATGAACTCCCTATG
32363512 ATTAGATTAG
Statistics
Matches: 282, Mismatches: 49, Indels: 25
0.79 0.14 0.07
Matches are distributed among these distances:
156 1 0.00
157 24 0.09
158 137 0.49
159 119 0.42
160 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGCGCTCAG
CGGTCGAAGAGGCAGAATGCGCAAGCAGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCCTG
CTGCCACAACCCTCAGTCCAGGCTGA
Found at i:32364396 original size:26 final size:26
Alignment explanation
Indices: 32364367--32364419 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
32364357 CTGATCCGAT
32364367 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
32364393 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
32364419 C
1 C
32364420 CTAAGTCAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:32364960 original size:26 final size:26
Alignment explanation
Indices: 32364931--32364983 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
32364921 CCGGTCTGAT
* *
32364931 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACCCCGTATG
*
32364957 CTTAGACTGGGGATGAACCCCGTATG
1 CTTAGACTGGGAATGAACCCCGTATG
32364983 C
1 C
32364984 CTATGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACCCCGTATG
Found at i:32365057 original size:564 final size:564
Alignment explanation
Indices: 32363984--32365084 Score: 1443
Period size: 564 Copynumber: 2.0 Consensus size: 564
32363974 TACGCAAGCT
* * * * *
32363984 GGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCCTACTACCGTAACCTTCAGTCCGGTCTGA
1 GGGGATCAACCCGATCCCCCCTGCGTGCTGTCGATCCTACTACCGCAACCCTCAGTCCGATCTGA
* * * * *
32364049 TTTTAAACTGGGAATGAACTCTGTATGCTTAAATCAACCCATGAAACGAGTGTACGGGCGCTAAG
66 TCTTAAACTGGGAATGAACTCTGTATGCCTAAATAAACCCATGAAACGAGCGTACGGGCACTAAG
** *
32364114 CCAGTCGGAGAGGCATAATGCGCAAGTCGCGGATCGACCTAGTCCCCCTCTACGTGCTACCGGTC
131 CCAACCGAAGAGGCATAATGCGCAAGTCGCGGATCGACCTAGTCCCCCTCTACGTGCTACCGGTC
* *
32364179 TCACTGCCACAACCCTCGATCTGGTTGGGGCTTAGACAAGGAATGAACTCCCTATGCCTAAGCCA
196 TCACTGCCACAACCCTCGATCTGGCTAGGGCTTAGACAAGGAATGAACTCCCTATGCCTAAGCCA
* * * * * * **
32364244 ACCCACGAGATAGGCGTGCGGGTACTTAGCCAGCCGAAGAGGTAGAATGCGCAAGCCAAGGATCG
261 ACCCACGAAACAGGCATGCGGGCACTCAGCCAGCCGAAGAGGCAGAATGCAAAAGCCAAGGATCG
* * *
32364309 ACCTGGTCCCCCCTGCGTGCTGTCGATCCTGCTGCCACAACCCTCGGTCTGATCCGATCTTAGAC
326 ACCCGGTCCCCCCTACGTGCTGTCGATCCTGCTGCCACAACCCTCGGTCCGATCCGATCTTAGAC
** * * *
32364374 TGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAATCGACAAAAT
391 TGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACCCCGTATGCCTAAGTCAACCCACAAAAC
* * * * * *
32364439 GAACATGCGGGTGCCCAGCCGACCAGAGAGGTAGAATGCGTAAGCCGAGGATCGAACGGGTGGTA
456 GAACATACGGGGGCCCAGCCAACCAGAGAGCTAGAATGCGCAAGCCGAGGATCGAACGCGTGGTA
32364504 GGTGGGCTCAAGCACATATTTATAATGCGTATAATGTGCAAGTC
521 GGTGGGCTCAAGCACATATTTATAATGCGTATAATGTGCAAGTC
* * * * *
32364548 GGGGATCAACTCGATCCCCCCTGCGTGCTGTCGATCTTGCTACTGCAACCCTCAGTCTGATCTGA
1 GGGGATCAACCCGATCCCCCCTGCGTGCTGTCGATCCTACTACCGCAACCCTCAGTCCGATCTGA
* * * *
32364613 TCTTAGACTGGGAATGAACTCTGTATGCCTAAGTAAACCCATGAAACGAGCGTGCGGGCACTGAG
66 TCTTAAACTGGGAATGAACTCTGTATGCCTAAATAAACCCATGAAACGAGCGTACGGGCACTAAG
* * * * *
32364678 CCAACCGAAGAGGCATAATGCGCAAGTCGGGGATCGACCTGGTCCCCAC-CTGCGTGCTGCTGGT
131 CCAACCGAAGAGGCATAATGCGCAAGTCGCGGATCGACCTAGTCCCC-CTCTACGTGCTACCGGT
* * * * *
32364742 CTCGCTGCCACAACCCTCGATTTGGCTAGGGCTTAGACATGTAATTAACTCCCTATGCCTAAGCC
195 CTCACTGCCACAACCCTCGATCTGGCTAGGGCTTAGACAAGGAATGAACTCCCTATGCCTAAGCC
* * * * * *
32364807 AACCCATGAAACGGGCATGCGGGCGCTCAGCC-GATCGGAGAGGCAGAATGCAAAAGCCGAGGAT
260 AACCCACGAAACAGGCATGCGGGCACTCAGCCAG-CCGAAGAGGCAGAATGCAAAAGCCAAGGAT
* * ** * * *
32364871 CGGCCCGGTCCCCCCTACGTGCTGTCGATCTTGCTGCCGTAACCCTTGGTCCGGTCTGATCTTAG
324 CGACCCGGTCCCCCCTACGTGCTGTCGATCCTGCTGCCACAACCCTCGGTCCGATCCGATCTTAG
* * *
32364936 ACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACCCCGTATGCCTATGTCAACCCACGAA
389 ACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACCCCGTATGCCTAAGTCAACCCACAAA
* * * * * *
32365001 ACGAGCGTACGGGGGCTCAGCCAACGAGAGACGCT-GGATGCGCAAGCCGGGGATCGAACGCGTG
454 ACGAACATACGGGGGCCCAGCCAACCAGAGA-GCTAGAATGCGCAAGCCGAGGATCGAACGCGTG
*
32365065 GTAGGTGGGTTCAAGCACAT
518 GTAGGTGGGCTCAAGCACAT
32365085 CTTCATATTT
Statistics
Matches: 455, Mismatches: 79, Indels: 6
0.84 0.15 0.01
Matches are distributed among these distances:
563 1 0.00
564 451 0.99
565 3 0.01
ACGTcount: A:0.24, C:0.28, G:0.28, T:0.21
Consensus pattern (564 bp):
GGGGATCAACCCGATCCCCCCTGCGTGCTGTCGATCCTACTACCGCAACCCTCAGTCCGATCTGA
TCTTAAACTGGGAATGAACTCTGTATGCCTAAATAAACCCATGAAACGAGCGTACGGGCACTAAG
CCAACCGAAGAGGCATAATGCGCAAGTCGCGGATCGACCTAGTCCCCCTCTACGTGCTACCGGTC
TCACTGCCACAACCCTCGATCTGGCTAGGGCTTAGACAAGGAATGAACTCCCTATGCCTAAGCCA
ACCCACGAAACAGGCATGCGGGCACTCAGCCAGCCGAAGAGGCAGAATGCAAAAGCCAAGGATCG
ACCCGGTCCCCCCTACGTGCTGTCGATCCTGCTGCCACAACCCTCGGTCCGATCCGATCTTAGAC
TGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACCCCGTATGCCTAAGTCAACCCACAAAAC
GAACATACGGGGGCCCAGCCAACCAGAGAGCTAGAATGCGCAAGCCGAGGATCGAACGCGTGGTA
GGTGGGCTCAAGCACATATTTATAATGCGTATAATGTGCAAGTC
Found at i:32366715 original size:159 final size:159
Alignment explanation
Indices: 32366386--32366747 Score: 360
Period size: 159 Copynumber: 2.3 Consensus size: 159
32366376 TCTATATGCG
* ** * * *
32366386 TAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCACTCAGCCG
1 TAGACATGGAATGAACTCCATATGCATAAGCCAACCCACGAAACGAGCATACAGGCACTCAGCAG
**
32366451 GTCGAAAAGGCAGAATGCACAAGTCCGGGATCTGCCTGGTCCCCCCCTATGTGCTGTCAATCTTG
66 GTCGAAAAGGCAGAATGCACAAGTCCGGGATCTGCCTGGTCCCCCCCTATGTGCTGTCAATCCCG
** *
32366516 CTGCCGTAACCCTCGATCTGGTATGATCT
131 CTGCCACAACCCTCGATCTGGTATGAGCT
* * * *
32366545 TAGAC-TGGGAAT-AGACTCCGTATGCATAAGTCAACCCAC-AAGACGAGCATACAGGCGCTGAG
1 TAGACAT-GGAATGA-ACTCCATATGCATAAGCCAACCCACGAA-ACGAGCATACAGGCACTCAG
* * * * * * * *
32366607 CAGGTCGAAGAGGGATAATGCGCAAGT-CGAGGAT-TGGCTTGGTCCCCCTCTGTGTGCTGTCGA
63 CAGGTCGAAAAGGCAGAATGCACAAGTCCG-GGATCT-GCCTGGTCCCCCCCTATGTGCTGTCAA
* *
32366670 TCCCGCTGCCACAACCCTCGGTCTGGCTA-GGGCT
126 TCCCGCTGCCACAACCCTCGATCTGG-TATGAGCT
* * * *
32366704 TAGACATGGAATGAATTCCCTATGC-CAAGCCAACCCATGAAACG
1 TAGACATGGAATGAACTCCATATGCATAAGCCAACCCACGAAACG
32366748 GGCGTGCGGG
Statistics
Matches: 164, Mismatches: 30, Indels: 19
0.77 0.14 0.09
Matches are distributed among these distances:
158 20 0.12
159 140 0.85
160 4 0.02
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.20
Consensus pattern (159 bp):
TAGACATGGAATGAACTCCATATGCATAAGCCAACCCACGAAACGAGCATACAGGCACTCAGCAG
GTCGAAAAGGCAGAATGCACAAGTCCGGGATCTGCCTGGTCCCCCCCTATGTGCTGTCAATCCCG
CTGCCACAACCCTCGATCTGGTATGAGCT
Found at i:32375135 original size:26 final size:26
Alignment explanation
Indices: 32375084--32375136 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
32375074 GGCTCAAAAT
*
32375084 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTATATG
32375110 CTTAGACAT-GGAATGAACTAC-ATATG
1 CTTAGAC-TGGGAATGAACT-CTATATG
32375136 C
1 C
32375137 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTATATG
Found at i:32375615 original size:25 final size:26
Alignment explanation
Indices: 32375581--32375632 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
32375571 CTGATCCAAT
*
32375581 CTTAGACTGGGAATGAAC-CCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
32375606 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
32375632 C
1 C
32375633 CTAAGTCAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 17 0.71
26 7 0.29
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:32376379 original size:159 final size:155
Alignment explanation
Indices: 32375970--32376389 Score: 364
Period size: 159 Copynumber: 2.6 Consensus size: 155
32375960 TGAACTTCGT
* *
32375970 AAGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAATGAATGCGT-GGGCGCT
1 AAGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAA--CA-GCGTCGGGCGCT
* * * * *
32376034 CAGCTGGTCGGAGAGGTAGAATGAGCAAGCCGGGGATCAACTCGATCCCCTCTGCGTGCTGTCGA
63 CAGC-GATCGGAGAGGTAGAATGAGCAAGCCAGGGATCAACTAGATCCCCTCTGCATGCTGCCGA
** * ** *
32376099 TCTTGCTATCGTAACCCTCAATCTGATCC
127 TCCCGCTACCACAACCCTCAATCCGATCC
* * * * *
32376128 AATCTTAGAC-TAGGAATGAATTCCGTATGCCTAAGTCAACCCA-CAGAACGAGCGTGCGGGCGT
1 AAGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGA-AAC-AGCGT-CGGGCGC
* *** * * *
32376191 TGAGCCGATCGGAGAACCATAATGTGCAAGCCAGGGATCGACCTAG-TCCCCCTCTGCATGCTGC
62 TCAG-CGATCGGAGAGGTAGAATGAGCAAGCCAGGGATC-AACTAGAT-CCCCTCTGCATGCTGC
* * * *
32376255 CGGTCCCGCTGCCACAACCCTCAGTCCGA-CTG
124 CGATCCCGCTACCACAACCCTCAATCCGATC-C
** *
32376287 GGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAGCCGTCCGGGCGCTC
1 AAGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAG-CGT-CGGGCGCTC
* *
32376352 AGACGATCGGAGAGGTAGAATGCGCAAGCCACGGATCA
64 AG-CGATCGGAGAGGTAGAATGAGCAAGCCAGGGATCA
32376390 GCTCGGTCGC
Statistics
Matches: 204, Mismatches: 46, Indels: 24
0.74 0.17 0.09
Matches are distributed among these distances:
156 4 0.02
157 3 0.01
158 78 0.38
159 117 0.57
160 2 0.01
ACGTcount: A:0.26, C:0.29, G:0.26, T:0.19
Consensus pattern (155 bp):
AAGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAGCGTCGGGCGCTCAG
CGATCGGAGAGGTAGAATGAGCAAGCCAGGGATCAACTAGATCCCCTCTGCATGCTGCCGATCCC
GCTACCACAACCCTCAATCCGATCC
Found at i:32377747 original size:171 final size:171
Alignment explanation
Indices: 32377468--32377781 Score: 395
Period size: 171 Copynumber: 1.8 Consensus size: 171
32377458 TAGACTAGCG
* *
32377468 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCTTGCGGGCACTCAACCGACCGGAGAGG
1 ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAACCGACCGGAGAGG
* * * * *
32377533 TATAATGCGTAAGTCGAGGATCAGCCCGATCCCCTTTTGCGTGCTGTCGATCCCGCTA-TCGGTC
66 CAGAATGCGTAAGCCGAGGATCAGCCCGATCCCCTTCTGCGTGCTGTCGATCCCACTACT-GGTC
32377597 CTG-TAGCCACAACCTTCTGTCCGGCTGGGGCTTAGACATGGA
130 CTGCT-GCCACAACCTTCTGTCCGGCTGGGGCTTAGACATGGA
* * * ** * **
32377639 ATGAGCTCCGTATGCCTAAGCCAACCCATGGAACGAGCGTGCGGGTGCTCAACTGGTCGGAGAGG
1 ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAACCGACCGGAGAGG
* *
32377704 CAGAATGTGTAAGCC-AGGGATC-GACCCGAT-CCCTCTCTGCGTGCTGTCGATCCTACTACTGG
66 CAGAATGCGTAAGCCGA-GGATCAG-CCCGATCCCCT-TCTGCGTGCTGTCGATCCCACTACTGG
32377766 TCCTGCTGCCACAACC
128 TCCTGCTGCCACAACC
32377782 CTCGATCCGA
Statistics
Matches: 121, Mismatches: 17, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
170 6 0.05
171 113 0.93
172 2 0.02
ACGTcount: A:0.22, C:0.30, G:0.27, T:0.21
Consensus pattern (171 bp):
ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAACCGACCGGAGAGG
CAGAATGCGTAAGCCGAGGATCAGCCCGATCCCCTTCTGCGTGCTGTCGATCCCACTACTGGTCC
TGCTGCCACAACCTTCTGTCCGGCTGGGGCTTAGACATGGA
Found at i:32380522 original size:26 final size:26
Alignment explanation
Indices: 32380471--32380523 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
32380461 CCGGTCTGAT
*
32380471 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
32380497 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
32380523 C
1 C
32380524 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:32382317 original size:26 final size:26
Alignment explanation
Indices: 32382279--32382331 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
32382269 CTACTCTGAT
*
32382279 CTTAGACTGGGAATGAACCCCGTATG
1 CTTAGACTGGGAATGAACCCCATATG
*
32382305 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACCCCATATG
32382331 C
1 C
32382332 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACCCCATATG
Found at i:32382959 original size:26 final size:26
Alignment explanation
Indices: 32382930--32382982 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
32382920 CCGATCTGAT
32382930 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCTGTATG
32382956 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCTGTATG
32382982 C
1 C
32382983 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCTGTATG
Found at i:32383259 original size:159 final size:158
Alignment explanation
Indices: 32382955--32383386 Score: 435
Period size: 159 Copynumber: 2.7 Consensus size: 158
32382945 AACTCTGTAT
* ** * ** *
32382955 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATAAAATGAGCGTACGATTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAG
* * *** * *
32383020 CCGGTCGTAGAGGCAGAATGCATAAGCCGGGGAGTAGCCCGGTCCCCCCCTGCGTGCTATCGATC
66 CCGGTCGGAGAGGCAGAATGCGTAAGCCGGGGACCGGCCCGGTCCCCCTCTGCGTGCTAGCGATC
* * *
32383085 CTGCTGTCCCTACCCTCGATCCGATCTGA-
131 CAGCTGTCCCAACCCTCGATCC-AGC-GAG
* * *
32383114 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCA
* * * *
32383178 GCCAGTCGGAGAGGCATAATGCGTAAGTCGGGGACCGGCCCGGTCCCCCTCTGCGTGCT-GCAGG
65 GCCGGTCGGAGAGGCAGAATGCGTAAGCCGGGGACCGGCCCGGTCCCCCTCTGCGTGCTAGC-GA
*
32383242 TCCAGCTG-CCACAACCCTCGGTCCAGCGAGG
129 TCCAGCTGTCC-CAACCCTCGATCCAGCGA-G
* * * *
32383273 GCTTAGACATGGAATGAACTTCC-CATGCCTAAGCCAACCCACGAAA-CAGGCATGCGGGTGGTC
1 GCTTAGACATGGAATGAAC-TCCGTATGCCTAAGCCAACCCACGAAATGA-GCGTGCGGGTGCTC
* * ** * *
32383336 AGCCGGCCGGAGAGGCAGAATGCGCAAGCCAAGGATCGACCCGGTCCCCCT
64 AGCCGGTCGGAGAGGCAGAATGCGTAAGCCGGGGACCGGCCCGGTCCCCCT
32383387 GTGTGCTGCC
Statistics
Matches: 224, Mismatches: 41, Indels: 16
0.80 0.15 0.06
Matches are distributed among these distances:
157 2 0.01
158 7 0.03
159 211 0.94
160 4 0.02
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAG
CCGGTCGGAGAGGCAGAATGCGTAAGCCGGGGACCGGCCCGGTCCCCCTCTGCGTGCTAGCGATC
CAGCTGTCCCAACCCTCGATCCAGCGAG
Found at i:32383308 original size:652 final size:648
Alignment explanation
Indices: 32382058--32383339 Score: 1621
Period size: 652 Copynumber: 2.0 Consensus size: 648
32382048 ATCAACATGA
* * *
32382058 TCCCCCTCTACGTCCTGCTGGTCCTGCTACCACAACCTTCGATCCGGCTAGGGCTTACACATGGA
1 TCCCCCTCGACGTCCTGCTGGTCCTGCTACCACAACCCTCGATCCAGCTAGGGCTTACACATGGA
*
32382123 ATGAACTCCGTATGCATAAGCCAACCCATGAAACGAGCGTGCGGGCACTTAACCGACTAGAGAGG
66 ATGAACTCCGTATGCATAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAACCGACTAGAGAGG
* ** *
32382188 CAAATGCGCAAGCTGGGGATCAGCCCGATCCCCCTACGTGCTATTGATTTTGCTGCTGGTCCTGC
131 CAAATGCGCAAGCTGGGGATCAGCCCGATCCCCCTACATGCTACCGATTTTGCTGCTGGTCCTAC
* * *
32382253 TGTCGCAACCCTCGGTCTACTCTGATCTTAGACTGGGAATGAACCCCGTATGCTTAGACATGGAA
196 TGCCGCAACACTCGGTCGACTCTGATCTTAGACTGGGAATGAACCCCGTATGCTTAGACATGGAA
* * * * *
32382318 TGAACTCCATATGCCTAAGCCAACACACAAAACGAGCGTATGGGCGCTCAGCTAGCCAGAGAGGT
261 TGAACTCCATATGCCTAAGCCAACACACAAAACGAGCGTACGAGCGCTCAACCAGCCAGAGAGGC
* * * * *
32382383 AGAATGCGTAAGCCAGGGAGTGGATCGATCCCCCCTGTGTGCTGTCGATCCTGCTACCACAACCC
326 AGAATGCATAAGCCAGGGAGTAGACCGATCCCCCCTGCGTGCTATCGATCCTGCTACCACAACCC
* * ** * *
32382448 TCGGTCCGGTCTGATCTTAGACTGGGAATGAACTTTGTATGCCTAAGTCAGCCCATGAAATGAGC
391 TCGATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGC
* * *
32382513 GTGCGCGTGCTGAGCTAGCCGAAGAGGCATAATGCACAAGCCGAGGATCGGCTCGGTCCCCCTCT
456 GTGCGCGTGCTGAGCCAGCCGAAGAGGCATAATGCACAAGCCGAGGACCGGCCCGGTCCCCCTCT
* * * *
32382578 GCGTATTGTCAGTCCTACTACCATAACCCTCACTCCGACTAGGGCTTAGACATGGAGTGAACTCC
521 GCGTACTGTCAGTCCTACTACCACAACCCTCACTCCGACGAGGGCTTAGACATGGAATGAACTCC
* * * *
32382643 GTATGCGTAAGCCAACCCATGAAACGGGCATGCGGGCGCTCAGCCAACCAGAGATCGACCCGG
586 GCATGCCTAAGCCAACCCACGAAACAGGCATGCGGGCGCTCAGCCAACCAGAGATCGACCCGG
* * * *
32382706 TCCCCCTCGGCGTCCTGCTGGT-CTGGCTGCCACAACCCTCGATCCAGCTGGGGCTTAGACATGG
1 TCCCCCTCGACGTCCTGCTGGTCCT-GCTACCACAACCCTCGATCCAGCTAGGGCTTACACATGG
* * * *
32382770 AATGAACTCTGTATGCATAAGCCTACCCATGAAACGAGTGTGCGGGCACTCAACCGA-TCGGAGA
65 AATGAACTCCGTATGCATAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAACCGACT-AGAGA
* * * * * * *
32382834 GGCAGAATGTGCGAGCTGGGGATCGGCCCGGTCCCCCCCTGCATGCTGCCG-TTCTTGTTGCTGG
129 GGCA-AATGCGCAAGCTGGGGATCAGCCCGAT--CCCCCTACATGCTACCGATT-TTGCTGCTGG
* * *
32382898 TCCTACTGCCTCAACACTCGGTCCGA-TCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGA
190 TCCTACTGCCGCAACACTCGGT-CGACTCTGATCTTAGACTGGGAATGAACCCCGTATGCTTAGA
** * * * ** * *
32382962 CATGGAATGAACTCTGTATGCCTAAGCCAACCCATAAAATGAGCGTACGATTGCTCAACCGGTC-
254 CATGGAATGAACTCCATATGCCTAAGCCAACACACAAAACGAGCGTACGAGCGCTCAACCAGCCA
* * *
32383026 GTAGAGGCAGAATGCATAAGCCGGGGAGTAGCCCGGTCCCCCCCTGCGTGCTATCGATCCTGCTG
319 G-AGAGGCAGAATGCATAAGCCAGGGAGTAGACCGAT-CCCCCCTGCGTGCTATCGATCCTGCT-
* *
32383091 TCC-CTACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
381 ACCACAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * * ** * *
32383155 CGAAATGAGCGTGCGGGTGCTGAGCCAGTCGGAGAGGCATAATGCGTAAGTCGGGGACCGGCCCG
446 CGAAATGAGCGTGCGCGTGCTGAGCCAGCCGAAGAGGCATAATGCACAAGCCGAGGACCGGCCCG
* * **
32383220 GTCCCCCTCTGCGTGCTG-CAGGTCC-AGCTGCCACAACCCTCGGTCC-AGCGAGGGCTTAGACA
511 GTCCCCCTCTGCGTACTGTCA-GTCCTA-CTACCACAACCCTCACTCCGA-CGAGGGCTTAGACA
* *
32383282 TGGAATGAACTTCC-CATGCCTAAGCCAACCCACGAAACAGGCATGCGGGTGGTCAGCC
573 TGGAATGAAC-TCCGCATGCCTAAGCCAACCCACGAAACAGGCATGCGGGCGCTCAGCC
32383340 GGCCGGAGAG
Statistics
Matches: 537, Mismatches: 83, Indels: 24
0.83 0.13 0.04
Matches are distributed among these distances:
647 3 0.01
648 115 0.21
649 23 0.04
650 3 0.01
651 158 0.29
652 230 0.43
653 5 0.01
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.21
Consensus pattern (648 bp):
TCCCCCTCGACGTCCTGCTGGTCCTGCTACCACAACCCTCGATCCAGCTAGGGCTTACACATGGA
ATGAACTCCGTATGCATAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAACCGACTAGAGAGG
CAAATGCGCAAGCTGGGGATCAGCCCGATCCCCCTACATGCTACCGATTTTGCTGCTGGTCCTAC
TGCCGCAACACTCGGTCGACTCTGATCTTAGACTGGGAATGAACCCCGTATGCTTAGACATGGAA
TGAACTCCATATGCCTAAGCCAACACACAAAACGAGCGTACGAGCGCTCAACCAGCCAGAGAGGC
AGAATGCATAAGCCAGGGAGTAGACCGATCCCCCCTGCGTGCTATCGATCCTGCTACCACAACCC
TCGATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGC
GTGCGCGTGCTGAGCCAGCCGAAGAGGCATAATGCACAAGCCGAGGACCGGCCCGGTCCCCCTCT
GCGTACTGTCAGTCCTACTACCACAACCCTCACTCCGACGAGGGCTTAGACATGGAATGAACTCC
GCATGCCTAAGCCAACCCACGAAACAGGCATGCGGGCGCTCAGCCAACCAGAGATCGACCCGG
Found at i:32383450 original size:26 final size:26
Alignment explanation
Indices: 32383421--32383471 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
32383411 GATCCGATCA
32383421 TAGACTGGGAATGAACTTCGTATGCT
1 TAGACTGGGAATGAACTTCGTATGCT
*
32383447 TAGACTGGGGATGAACTTCGTATGC
1 TAGACTGGGAATGAACTTCGTATGC
32383472 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.16, G:0.29, T:0.29
Consensus pattern (26 bp):
TAGACTGGGAATGAACTTCGTATGCT
Found at i:32385002 original size:26 final size:26
Alignment explanation
Indices: 32384973--32385025 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
32384963 TTGGTCCGAT
32384973 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
32384999 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
32385025 C
1 C
32385026 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:32386594 original size:158 final size:157
Alignment explanation
Indices: 32386124--32386637 Score: 428
Period size: 158 Copynumber: 3.2 Consensus size: 157
32386114 GCAAGCCGAC
* * * * * * *
32386124 GATCGGCCCAGTCCCCCCTACGAGCAGTCGATCCTACTACTGGAACCCTCGATCTGGTCTGATCT
1 GATCGACCCAGTCCCCCCTACGTGCTGCCGATCCTGCTACTGCAACCCTCGGTCTGGTCTGATCT
* * * * *
32386189 TAGACTGAGAATGAACTCCATATGCATAAGTCAACCCACGAAACGA-GTGTAAGAGCATTGAGCC
66 TAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGGTGTAGGAGC-TCG-GTC
* * * **
32386253 GACCGAAGAGGCATAATGCACAAG-TCAAG
129 GATCGGAGAGGCAGAATGCACAAGCT-GGG
* * * * *** * * * **
32386282 GATCGACCCTGTCCCCCTCTGCGTGCTGCCGTTCTTGCTACCATAAACCTCGGTC-CGACTGGGG
1 GATCGACCCAGTCCCCC-CTACGTGCTGCCGATCCTGCTACTGCAACCCTCGGTCTGGTCT-GAT
* * * *
32386346 CTTAGACAT-GTAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGT-GGCCA-CTC
64 CTTAGAC-TGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAG-GTGTAGG--AGCTC
* ** * * *
32386408 AGTCGATTAGAGTGGTAGAATGCTCAAGCTGGG
125 GGTCGATCGGAGAGGCAGAATGCACAAGCTGGG
* **
32386441 GATCGACTCAGTCCCCCCTACGTGCTGCCGATCCTGCTGTTGCAACCCTCGGTCTGGTCTGATCT
1 GATCGACCCAGTCCCCCCTACGTGCTGCCGATCCTGCTACTGCAACCCTCGGTCTGGTCTGATCT
* *
32386506 TAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAATGAGTGTGTAGGTGCTCGGTCG
66 TAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAG-GTGTAGGAGCTCGGTCG
* * *
32386571 GTCGGAGAGGCAGAATGCGCAAGCCGGG
130 ATCGGAGAGGCAGAATGCACAAGCTGGG
* * * *
32386599 GATCGGCCCGGTCCCTCCCTGCGTGCTACCGATCCTGCT
1 GATCGACCCAGTCCC-CCCTACGTGCTGCCGATCCTGCT
32386638 GCTGGTCCTG
Statistics
Matches: 270, Mismatches: 73, Indels: 25
0.73 0.20 0.07
Matches are distributed among these distances:
157 1 0.00
158 133 0.49
159 126 0.47
160 4 0.01
161 5 0.02
162 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.21
Consensus pattern (157 bp):
GATCGACCCAGTCCCCCCTACGTGCTGCCGATCCTGCTACTGCAACCCTCGGTCTGGTCTGATCT
TAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGGTGTAGGAGCTCGGTCGA
TCGGAGAGGCAGAATGCACAAGCTGGG
Found at i:32386713 original size:26 final size:26
Alignment explanation
Indices: 32386675--32386727 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
32386665 CTAGTTTGAT
*
32386675 CTTAGACTAGGAATGCACTCAGTATG
1 CTTAGACTAGGAATGAACTCAGTATG
*
32386701 CTTAGAC-ATGGAATGAACTCTGTATG
1 CTTAGACTA-GGAATGAACTCAGTATG
32386727 C
1 C
32386728 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCAGTATG
Found at i:32388309 original size:26 final size:26
Alignment explanation
Indices: 32388271--32388323 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
32388261 TGCTCAAAAT
32388271 CTTAGACTAGGAATGAACGT-CGTATG
1 CTTAGACTAGGAATGAAC-TCCGTATG
32388297 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
32388323 C
1 C
32388324 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 2 0.08
26 23 0.92
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:32389522 original size:26 final size:26
Alignment explanation
Indices: 32389484--32389536 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
32389474 GGCTCAAACT
32389484 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
32389510 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
32389536 C
1 C
32389537 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:32389895 original size:158 final size:158
Alignment explanation
Indices: 32389509--32390064 Score: 478
Period size: 158 Copynumber: 3.4 Consensus size: 158
32389499 AACTCCGTAT
* *
32389509 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACG-AATCGAGCATGCGAGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAT-GAGCGT-CGGGCGCTCA
** * * * * * *
32389573 GCCGACCGGAGAGGCAG-ATGCGCAAGCTGGGGATCGGCCCGATCCCCCTCTACGTGCTACCAGT
64 GCCGGTCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCACCTCTGCGTGCTGCCAAT
** * *
32389637 CCCGCTACCACAACCCTTGGTCCAGTTGGG
129 CTTGCTACCACAACCCTCGGTCCAGTTGGA
* * * ** * *
32389667 GCTTAGACATGGATTAAACTCCCTATGCCTAAGCCAACCCATAAAACGTGTGCG-CTGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA--TGAGCGTCGGGCGCTCA
* * *
32389731 ACCGGTCGAAGAGGCAGAATGCGCAAGCCGGGGATTGGCCCGATCCTCCT-TGCGTGCTGCCAAT
64 GCCGGTCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCACCTCTGCGTGCTGCCAAT
* *
32389795 CTTGCTATCGCAACCCTCGGTCCAGTCT-GA
129 CTTGCTACCACAACCCTCGGTCCAGT-TGGA
* * * *
32389825 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGTGATCA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGT-CGGGCGCTCA
* * * * * * * * *
32389889 GTCGGTCGAAGAGTCATAATGCACAAACCGGGGATCAGCGCAATCCACCTCTGCGTGCTGTCAAT
64 GCCGGTCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCACCTCTGCGTGCTGCCAA-
* * *
32389954 CTTACTGTCTGTCCTACTACCACAACCCTCGATTCAGCTAGG-
128 --T-C--T-TG-----CTACCACAACCCTCGGTCCAG-TTGGA
* *
32389996 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGT-CGGGCGCTCAG
32390061 CCGG
65 CCGG
32390065 CTAGAAAGGT
Statistics
Matches: 315, Mismatches: 59, Indels: 35
0.77 0.14 0.09
Matches are distributed among these distances:
156 5 0.02
157 1 0.00
158 175 0.56
159 44 0.14
160 3 0.01
161 1 0.00
162 1 0.00
163 1 0.00
165 1 0.00
166 2 0.01
171 78 0.25
172 3 0.01
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTCGGGCGCTCAGC
CGGTCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCACCTCTGCGTGCTGCCAATCT
TGCTACCACAACCCTCGGTCCAGTTGGA
Found at i:32391427 original size:159 final size:157
Alignment explanation
Indices: 32391071--32391433 Score: 390
Period size: 157 Copynumber: 2.3 Consensus size: 157
32391061 GGCTCAAAAT
* *
32391071 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCACATAGC
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACATAGC
* * ** *
32391136 CGACCGGAAAGACAGAATGCGCAAGTCGGGGATCGACCCGATCCCCCCTACTGCTGTCGATCCTG
66 CGACCAGAAAGACAGAATGCGCAAGTCGGGGATCGACCAGATCCCCCCTACTGCTACCGATCCCG
* * * *
32391201 CTACCACATCCCTCGGTTCGATCCGAT
131 CTACCACAACCCTCGATCCGATCCGAG
* * * *
32391228 CTTAGACTAGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCAC-TGAG
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACAT-AG
* * * * * *
32391292 CCGACCAGAGAGGCATAATGCGCAAG-CTGGGGATCGACCAGGTCCTCCTCTACGTGCTACCGGT
65 CCGACCAGAAAGACAGAATGCGCAAGTC-GGGGATCGACCAGATCC-CCCCTAC-TGCTACCGAT
* * * * * *
32391356 CCCGTTGCCACAACCGTTGATCCGA-CTGGGG
127 CCCGCTACCACAACCCTCGATCCGATC-CGAG
* * *
32391387 CTTAGACAAGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACG
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACG
32391434 GACGTGCAAG
Statistics
Matches: 168, Mismatches: 33, Indels: 8
0.80 0.16 0.04
Matches are distributed among these distances:
156 2 0.01
157 93 0.55
158 7 0.04
159 66 0.39
ACGTcount: A:0.26, C:0.31, G:0.25, T:0.18
Consensus pattern (157 bp):
CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACATAGC
CGACCAGAAAGACAGAATGCGCAAGTCGGGGATCGACCAGATCCCCCCTACTGCTACCGATCCCG
CTACCACAACCCTCGATCCGATCCGAG
Found at i:32391574 original size:26 final size:26
Alignment explanation
Indices: 32391545--32391597 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
32391535 CCGATCTGAT
* *
32391545 CTTAGACTGGGAATGAGCTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
32391571 CTTAGATTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
32391597 C
1 C
32391598 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:32392137 original size:26 final size:26
Alignment explanation
Indices: 32392085--32392137 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
32392075 CTGGTCTGAT
* *
32392085 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGAATG
32392111 CTTAGACTAGGG-ATGAACTCCGAATG
1 CTTAGACT-GGGAATGAACTCCGAATG
32392137 C
1 C
32392138 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGAATG
Found at i:32392796 original size:26 final size:26
Alignment explanation
Indices: 32392745--32392797 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
32392735 GGCTCAAAAT
* *
32392745 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATCAACTCTATATG
*
32392771 CTTAGACTGGGGATCAACT-TCATATG
1 CTTAGACTGGGAATCAACTCT-ATATG
32392797 C
1 C
32392798 CTAAGTTAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCTATATG
Found at i:32393605 original size:159 final size:157
Alignment explanation
Indices: 32393232--32393631 Score: 446
Period size: 159 Copynumber: 2.5 Consensus size: 157
32393222 CCTTATGCTG
* * *
32393232 AGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGGGCGTGCGAGAGCTCAGTCGA
1 AGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGGCGTGCG-GCGCTCAGTCGG
* * * *
32393297 TCGGATAGGCAGAATGCGCAAGTCGGGGACTGGTCCGGTCCCCCCAGCATGCTATCGATCCTGCT
65 TCGGAGAGGCAGAATGCGCAAGTCGGGGACTAGTCCGGACCCCCCAGCATGCTATCGATCCCGCT
* * *
32393362 GCCCCAACCCTCGATCTGGTCTGATCTT
130 GCCACAACCCTCGATCTGGTCAGAGCTT
* * * ** ** *
32393390 AGAC-TGGGAATGAACTCTGTATGCATAAGTCAACCCATTAAACAAGCGTGCGGGCGCTGAGTCG
1 AGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGGCGTGC-GGCGCTCAGTCG
* * * * * *
32393454 GTCGAAGAGGCATAATGCGCAAGTCGGGGATTAGTCCGGACCCCCTCTGCGTGCTGTC-AGTCCC
64 GTCGGAGAGGCAGAATGCGCAAGTCGGGGACTAGTCCGGACCCCC-CAGCATGCTATCGA-TCCC
*
32393518 GCTGCCACAACCCTCGATCTGG-CAAGGGCTT
127 GCTGCCACAACCCTCGATCTGGTC-AGAGCTT
* * * *
32393549 AGACATGGAATGAACACCCTACGCCTAAGCCAACCCACGAAACGGGTGTGCAGGCGCTCAGTCGG
1 AGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGGCGTGC-GGCGCTCAGTCGG
*
32393614 TCGGAGGGGCAGAATGCG
65 TCGGAGAGGCAGAATGCG
32393632 TAAGCCGAGA
Statistics
Matches: 195, Mismatches: 41, Indels: 11
0.79 0.17 0.04
Matches are distributed among these distances:
157 1 0.01
158 90 0.46
159 103 0.53
160 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.29, T:0.18
Consensus pattern (157 bp):
AGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGCGCTCAGTCGGT
CGGAGAGGCAGAATGCGCAAGTCGGGGACTAGTCCGGACCCCCCAGCATGCTATCGATCCCGCTG
CCACAACCCTCGATCTGGTCAGAGCTT
Found at i:32393657 original size:159 final size:157
Alignment explanation
Indices: 32393232--32393730 Score: 425
Period size: 158 Copynumber: 3.2 Consensus size: 157
32393222 CCTTATGCTG
* * *
32393232 AGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGGGCGTGCGAGAGCTCAGTCGA
1 AGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGGCGTGCG-GCGCTCAGTCGG
* * * * * * * *
32393297 TCGGATAGGCAGAATGCGCAAGTCGGGGA-CTGGTCCGGTCCCCCCAGCATGCTATCGATCCTGC
65 TCGGAGAGGCAGAATGCGCAAGCCGGGAATC-GGCCCGATCCCCCCTGCATGCTGTCGATCCCGC
* * *
32393361 TGCCCCAACCCTCGATCTGGTCTGATCTT
129 TGCCACAACCCTCGATCTGGTCAGAGCTT
* * * ** ** *
32393390 AGAC-TGGGAATGAACTCTGTATGCATAAGTCAACCCATTAAACAAGCGTGCGGGCGCTGAGTCG
1 AGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGGCGTGC-GGCGCTCAGTCG
* * * * * * * *
32393454 GTCGAAGAGGCATAATGCGCAAGTCGGGGATTAGTCCGGA-CCCCCTCTGCGTGCTGTC-AGTCC
64 GTCGGAGAGGCAGAATGCGCAAG-CCGGGAATCGGCCCGATCCCCC-CTGCATGCTGTCGA-TCC
*
32393517 CGCTGCCACAACCCTCGATCTGG-CAAGGGCTT
126 CGCTGCCACAACCCTCGATCTGGTC-AGAGCTT
* * * *
32393549 AGACATGGAATGAACACCCTACGCCTAAGCCAACCCACGAAACGGGTGTGCAGGCGCTCAGTCGG
1 AGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGGCGTGC-GGCGCTCAGTCGG
* * * * **
32393614 TCGGAGGGGCAGAATGCGTAAGCCGAGAATCGGCCCGATCCCCCCTGCATGCTGCCGATCCTACT
65 TCGGAGAGGCAGAATGCGCAAGCCGGGAATCGGCCCGATCCCCCCTGCATGCTGTCGATCCCGCT
** * * * * * *
32393679 ATCGCAACCCTCGGTCCGATCTGATCTT
130 GCCACAACCCTCGATCTGGTCAGAGCTT
32393707 AGAC-TGGGAATGAACTCCGTATGC
1 AGACAT-GGAATGAACTCCGTATGC
32393731 TTAGACTAGG
Statistics
Matches: 259, Mismatches: 70, Indels: 24
0.73 0.20 0.07
Matches are distributed among these distances:
157 2 0.01
158 137 0.53
159 119 0.46
160 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (157 bp):
AGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGCGCTCAGTCGGT
CGGAGAGGCAGAATGCGCAAGCCGGGAATCGGCCCGATCCCCCCTGCATGCTGTCGATCCCGCTG
CCACAACCCTCGATCTGGTCAGAGCTT
Found at i:32393733 original size:26 final size:26
Alignment explanation
Indices: 32393704--32393756 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
32393694 CCGATCTGAT
32393704 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
32393730 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
32393756 C
1 C
32393757 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:32394226 original size:26 final size:26
Alignment explanation
Indices: 32394197--32394249 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32394187 CCGATCTGAT
*
32394197 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
32394223 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
32394249 C
1 C
32394250 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:32394526 original size:355 final size:355
Alignment explanation
Indices: 32394013--32394707 Score: 874
Period size: 355 Copynumber: 2.0 Consensus size: 355
32394003 TCGGTCCCGT
** * *
32394013 TGCCACAACTGTCGGTCCGGTTGGGGCTTAGAGATGGAATGAACTACCTATGCCTAAGCCAACCC
1 TGCCACAACCCTCGGTCCGGATGGGGCTTAGACATGGAATGAACTACCTATGCCTAAGCCAACCC
** * * * * * *
32394078 ATGAAATGGGCTTACGGGCGCTCAGTCGGTCGGAGAGGTAGAATGCGCAAGCCGAGGGTCGACCC
66 ACAAAACGAGCGTACGGGCGCTCAATCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGGTCGACCC
**** * * * *
32394143 AGTCCCCCTTGTATGCTGCTGGTCCTGCTGCCGTAACCCTCAATCCGATCTGATCTTAGACTGGG
131 AGTCCCCCCAACATGCAGCTGATCCTGCTGCCATAACCCTCAATCCGATCTGATCTTAGACTGGA
* * ** *
32394208 AATGAACTCTGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACATGCCAAATGAGC
196 AATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACACACCAAACGAGC
* * * * * *
32394273 GTGCGGGCGCTCAGCCGGTCGGAGAGGCATAATGCGTA-AGCCAGGGATCAACCCGGTCCCCCTC
261 GTGCGGGCACTCAGCCGGTCGAAGAGGCAGAATGCGCATA-CCAGGGATCAACCCGATCCCCCCC
32394337 AACGTGCTATCGATCCCACTGTCGATCCTAC
325 AACGTGCTATCGATCCCACTGTCGATCCTAC
*
32394368 TGCCACAACCCTCGGTCTGGATGGGGCTTAGACATGGAATGAACT-CCGTATGCCTAAGCCAACC
1 TGCCACAACCCTCGGTCCGGATGGGGCTTAGACATGGAATGAACTACC-TATGCCTAAGCCAACC
** * * * **
32394432 CACAAAACGAGCGTGTGGGTGCTCAATTGGCCGGAGAGGCAGAATGCGCAAGTCG-GGGATCGGT
65 CACAAAACGAGCGTACGGGCGCTCAATCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGG-TCGAC
* * * * * *
32394496 CCGGTCCCCCCAACGTGCAGCTGATCCTGCTGCCATAACCGTCGATTCGATCTGATCTTAGATTG
129 CCAGTCCCCCCAACATGCAGCTGATCCTGCTGCCATAACCCTCAATCCGATCTGATCTTAGACTG
* *
32394561 GAAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGA
194 GAAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACACACCAAACGA
* * *
32394626 GCGTGCGGGCACTCAGCCGGTCGAAGAGGTAGAATGCGCATACCGGGGATCAGCCCGATCCCCCC
259 GCGTGCGGGCACTCAGCCGGTCGAAGAGGCAGAATGCGCATACCAGGGATCAACCCGATCCCCCC
**
32394691 CTGCGTGCTATCGATCC
324 CAACGTGCTATCGATCC
32394708 TGGTGCTGTA
Statistics
Matches: 285, Mismatches: 52, Indels: 6
0.83 0.15 0.02
Matches are distributed among these distances:
354 5 0.02
355 279 0.98
356 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (355 bp):
TGCCACAACCCTCGGTCCGGATGGGGCTTAGACATGGAATGAACTACCTATGCCTAAGCCAACCC
ACAAAACGAGCGTACGGGCGCTCAATCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGGTCGACCC
AGTCCCCCCAACATGCAGCTGATCCTGCTGCCATAACCCTCAATCCGATCTGATCTTAGACTGGA
AATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACACACCAAACGAGC
GTGCGGGCACTCAGCCGGTCGAAGAGGCAGAATGCGCATACCAGGGATCAACCCGATCCCCCCCA
ACGTGCTATCGATCCCACTGTCGATCCTAC
Found at i:32395166 original size:317 final size:317
Alignment explanation
Indices: 32394577--32395397 Score: 826
Period size: 317 Copynumber: 2.6 Consensus size: 317
32394567 AACTCCGTAT
* *
32394577 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAG
* * * *
32394642 CCGGTCGAAGAGGTAGAATGCGCATACCGGGGATCAGCCCGATCCCCCCCTGCGTGCTATCGATC
66 CCGATCGAAGAGGCAGAATGCGCATACCGAGGATCAGCCAGA-CCCCCCCTGCGTGCTATCGATC
** * *** * * *
32394707 CTGGTGCTGTAACCCTCAGTCCGATCCGATCTTAGACTGGGAATGAACTTCGTTTGCCTAAGTCA
130 CTACTACCACAACCCTCAGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCA
** * * *
32394772 ACCAATGAAACAAGCGTGCGGGCGCTGAGCCAGCTAAAGAGGCATAATGCACAAGCCAGGGATCG
195 ACCAACAAAACAAGCGTGCGGGCACTGAGCCAGCTAAAGAGGAATAATGCACAAGCCAGGGATCA
* * *
32394837 GCCCGCTCCCCCTCAGCGTGCTGTCGGTCCCGCTACCACAACCCCCGATCTGGCTGGG
260 GCCCGCTCCCCCTCAGCGTGCTATCGGTCCCGCTACCACAACCCCCGATCCGACTGGG
* * *
32394895 GCTTAGACATGGAATGAATTCCCTATGCCTAAGCCAACCCGCGAAAC-ATGCGTACGGGTACTCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGA-GCGTACGGGCACTCA
* * * * * * *
32394959 GTCGATCGGAGAGGCAGAATGTGCA-AGCCGAGGATCGGTCCAGA-GCCCCCTGCGTGTTGTCGA
65 GCCGATCGAAGAGGCAGAATGCGCATA-CCGAGGATCAG-CCAGACCCCCCCTGCGTGCTATCGA
* * *
32395022 TCCTACTACCACAACCCTCGGTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCATAAGT
128 TCCTACTACCACAACCCTCAGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCATAAGT
* ** * ** *
32395087 CAACCCACAAAATGAGCGTGCGGGCATTGAGCTTG-TCGAAGAGGAATAATGCACAAGCCAGGGA
193 CAACCAACAAAACAAGCGTGCGGGCACTGAGCCAGCT-AAAGAGGAATAATGCACAAGCCAGGGA
* * * * * *** *
32395151 TCAGCCCGGTCCCCCTCTGCGTGTTATCGGTCTCGCTGCCACAACCTTTGGTCCGACTGGG
257 TCAGCCCGCTCCCCCTCAGCGTGCTATCGGTCCCGCTACCACAACCCCCGATCCGACTGGG
* * * * ** * *
32395212 GCTTAGACATGCAATGAACTCCCTATACCTAAGCCAACCCACGAAACGGGCATGTGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAG
* * * * * ** *
32395277 CCGA-CTAGAGAGGCAGAATGTGCA-AGTCGGGGATCAGCCCGTTCCCCTCTGCGTGCTATCGAT
66 CCGATCGA-AGAGGCAGAATGCGCATA-CCGAGGATCAGCCAGACCCCCCCTGCGTGCTATCGAT
**** ** ** * * *
32395340 CCTACTATTGGAACCCTTGGTTTGGTCTGATCTTAGACTGGGAATGAACTTCGTATGC
129 CCTACTACCACAACCCTCAGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGC
32395398 TTAGACTTGG
Statistics
Matches: 411, Mismatches: 85, Indels: 15
0.80 0.17 0.03
Matches are distributed among these distances:
316 5 0.01
317 316 0.77
318 86 0.21
319 4 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (317 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAG
CCGATCGAAGAGGCAGAATGCGCATACCGAGGATCAGCCAGACCCCCCCTGCGTGCTATCGATCC
TACTACCACAACCCTCAGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAA
CCAACAAAACAAGCGTGCGGGCACTGAGCCAGCTAAAGAGGAATAATGCACAAGCCAGGGATCAG
CCCGCTCCCCCTCAGCGTGCTATCGGTCCCGCTACCACAACCCCCGATCCGACTGGG
Found at i:32395228 original size:159 final size:159
Alignment explanation
Indices: 32394577--32395342 Score: 548
Period size: 159 Copynumber: 4.8 Consensus size: 159
32394567 AACTCCGTAT
*
32394577 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTCAG
* * * * * *
32394642 CCGGTCGAAGAGGTAGAATGCGCATA-CCGGGGATCAGCCCGATCCCCCCCTGCGTGCTATCGAT
66 CCAGTCGAAGAGGCAGAATGCACA-AGCCAGGGATCAGCCCGGTCCCCCTCTGCGTGCTATCGAT
* * *** *
32394706 CCTGGTGCTGTAACCCTCAGTCCGA-TCCGA
130 CCTGCTACCACAACCCTCGGTCCGACT-CGA
* * * * * ** * * *
32394736 TCTTAGAC-TGGGAATGAACTTCGTTTGCCTAAGTCAACCAATGAAACAAGCGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTCA
* * * * * * *
32394800 GCCAG-CTAAAGAGGCATAATGCACAAGCCAGGGATCGGCCCGCTCCCCCTCAGCGTGCTGTCGG
65 GCCAGTC-GAAGAGGCAGAATGCACAAGCCAGGGATCAGCCCGGTCCCCCTCTGCGTGCTATCGA
* * * * * * *
32394864 TCCCGCTACCACAACCCCCGATCTGGCTGGG
129 TCCTGCTACCACAACCCTCGGTCCGACTCGA
* * * * * *
32394895 GCTTAGACATGGAATGAATTCCCTATGCCTAAGCCAACCCGCGAAAC-ATGCGTACGGGTACTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGA-GCGTGCGGGCACTCA
* * ** * * * ** * *
32394959 GTC-GATCGGAGAGGCAGAATGTGCAAGCC-GAGGATCGGTCCAGAGCCCC-CTGCGTGTTGTCG
65 GCCAG-TCGAAGAGGCAGAATGCACAAGCCAG-GGATCAGCCCGGTCCCCCTCTGCGTGCTATCG
* **
32395021 ATCCTACTACCACAACCCTCGGTCCGGTTCGA
128 ATCCTGCTACCACAACCCTCGGTCCGACTCGA
* * * * * *
32395053 TCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACAAAATGAGCGTGCGGGCATTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTCA
** * * * *
32395117 GCTTGTCGAAGAGGAATAATGCACAAGCCAGGGATCAGCCCGGTCCCCCTCTGCGTGTTATCGGT
65 GCCAGTCGAAGAGGCAGAATGCACAAGCCAGGGATCAGCCCGGTCCCCCTCTGCGTGCTATCGAT
* * * * *
32395182 -CTCGCTGCCACAACCTTTGGTCCGACTGGG
130 CCT-GCTACCACAACCCTCGGTCCGACTCGA
* * * * * * * * *
32395212 GCTTAGACATGCAATGAACTCCCTATACCTAAGCCAACCCACGAAACGGGCATGTGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTCAG
* * ** * * *
32395277 CC-GACTAGAGAGGCAGAATGTGCAAGTCGGGGATCAGCCC-GTTCCCCTCTGCGTGCTATCGAT
66 CCAGTCGA-AGAGGCAGAATGCACAAGCCAGGGATCAGCCCGGTCCCCCTCTGCGTGCTATCGAT
32395340 CCT
130 CCT
32395343 ACTATTGGAA
Statistics
Matches: 459, Mismatches: 130, Indels: 36
0.73 0.21 0.06
Matches are distributed among these distances:
157 1 0.00
158 146 0.32
159 308 0.67
160 4 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTCAG
CCAGTCGAAGAGGCAGAATGCACAAGCCAGGGATCAGCCCGGTCCCCCTCTGCGTGCTATCGATC
CTGCTACCACAACCCTCGGTCCGACTCGA
Found at i:32395412 original size:26 final size:26
Alignment explanation
Indices: 32395371--32395423 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
32395361 TTGGTCTGAT
32395371 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
32395397 CTTAGACTTGGG-ATGAACTTCGTATG
1 CTTAGAC-TGGGAATGAACTTCGTATG
32395423 C
1 C
32395424 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:32396111 original size:26 final size:26
Alignment explanation
Indices: 32396082--32396134 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
32396072 CCGATCTGAT
*
32396082 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
32396108 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
32396134 C
1 C
32396135 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:32396842 original size:26 final size:26
Alignment explanation
Indices: 32396803--32396852 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
32396793 TGTCTCAAAC
32396803 TCTTAGACTAGGAATGAACTCCGTGA
1 TCTTAGACTAGGAATGAACTCCGTGA
32396829 TCTTAGAC-ATGGAATGAACTCCGT
1 TCTTAGACTA-GGAATGAACTCCGT
32396853 ATGCCTGAGC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (26 bp):
TCTTAGACTAGGAATGAACTCCGTGA
Found at i:32397580 original size:26 final size:26
Alignment explanation
Indices: 32397540--32397592 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
32397530 GGCTCAAAAT
32397540 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
32397566 CTTAGACATGG-AATGAACTCCGTATG
1 CTTAGAC-TGGAAATGAACTCCGTATG
32397592 C
1 C
32397593 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:32398082 original size:26 final size:26
Alignment explanation
Indices: 32398041--32398093 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32398031 CTAGTCTGAT
*
32398041 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
32398067 CTTAGACT-GGAGATGAACTCCGTATG
1 CTTAGACTAGGA-ATGAACTCCGTATG
32398093 C
1 C
32398094 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 3 0.12
26 22 0.88
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:32399174 original size:26 final size:26
Alignment explanation
Indices: 32399138--32399190 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
32399128 TTGGACTAAT
32399138 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
32399164 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
32399190 C
1 C
32399191 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:32399358 original size:26 final size:26
Alignment explanation
Indices: 32399322--32399374 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
32399312 CTGGTCTGAT
32399322 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
32399348 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
32399374 C
1 C
32399375 CTAAGTCAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:32399423 original size:184 final size:184
Alignment explanation
Indices: 32398980--32399441 Score: 507
Period size: 184 Copynumber: 2.5 Consensus size: 184
32398970 TCCGGCTAGG
* * * * *** *
32398980 GCTTAGACAT-GGAATGAACTCC-TATGTCTAAGCCAACCCACAAAACGGGCGTGCGGGCACTCA
1 GCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAACGTGCGGGCGCTCA
* * * *
32399043 GCCGACTGGAGAGGCAGAATGCGCAAGCTGGAGATCGGTTCGATCCCCTCTGCGTGCTACCAATC
65 GCCGACCGAAGAGGCAGAATGCGCAAGCCGGAGATCGGTTCGATCCCCTCTACGTGCTACCAATC
**** * *
32399108 CTACTGTGGCAACCCTCGGTTTGGACTAATCTTAGACTGGGAATGAACTCCGTAT
130 CTACTACCACAACCCTCAGTCTGGACTAATCTTAGACTGGGAATGAACTCCGTAT
* ** * * *
32399163 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATAGGCATGCGGGTGCTTAG
1 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAACGTGCGGGCGCTCAG
** * ** *
32399228 CCGGTCGAAGAGGCAGAATGCGTAAGCCGGAGATCGGTTCGAT-CCCTCCTACGTGCTGTCGATC
66 CCGACCGAAGAGGCAGAATGCGCAAGCCGGAGATCGGTTCGATCCCCT-CTACGTGCTACCAATC
* * *
32399292 CTACTACCACAACCCTTAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
130 CTACTACCACAACCCTCAGTCTGGACTAATCTTAGACTGGGAATGAACTCCGTAT
* * * * *
32399347 GCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAAGCCATGGAACAAACGTGCAGGCGCTCAG
1 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAACGTGCGGGCGCTCAG
* * * *
32399412 CTGACCGAAGAGGCAGGATACACAAGCCGG
66 CCGACCGAAGAGGCAGAATGCGCAAGCCGG
32399442 GGATTGAACG
Statistics
Matches: 229, Mismatches: 47, Indels: 5
0.81 0.17 0.02
Matches are distributed among these distances:
182 1 0.00
183 23 0.10
184 205 0.90
ACGTcount: A:0.26, C:0.26, G:0.27, T:0.21
Consensus pattern (184 bp):
GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAACGTGCGGGCGCTCAG
CCGACCGAAGAGGCAGAATGCGCAAGCCGGAGATCGGTTCGATCCCCTCTACGTGCTACCAATCC
TACTACCACAACCCTCAGTCTGGACTAATCTTAGACTGGGAATGAACTCCGTAT
Found at i:32401168 original size:159 final size:157
Alignment explanation
Indices: 32400875--32401381 Score: 490
Period size: 159 Copynumber: 3.2 Consensus size: 157
32400865 TGAACTCTGT
* **
32400875 GATCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTC
1 GATCTTAGACATGGAATGAACTCCGTATG-CTAAGCCAACCCATGAAACGAGCGTGTGGGCGCTC
* * * * * * *
32400940 AGCAAGCCGGAGAGGCAGAATGCACAAGCCGGGGATCA-GCCTGGACCCCC-CCTGCATGTTGTC
65 AGCAA-CCGGAGAGGCAGAATGCGCAAGCCGGGGAT-AGGCCCGGTCCCCCTAC-GCGTGCTGCC
*
32401003 GATCCTGCTGCCGCAACCCTCGGTCTGGTTC
127 GATCCTGCTGCCGCAACCCTCGGTCCGGTTC
*
32401034 GATCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTGTGGGCGCT
1 GATCTTAGACAT-GGAATGAACTCCGTATGC-TAAGCCAACCCATGAAACGAGCGTGTGGGCGCT
* * * * *
32401098 GAGCCAACC-GAGGAGGCATAATGCGCAAGCCGAGGATAGGCCCAGTCCCCCTACGCGTGCTACC
64 CAG-CAACCGGA-GAGGCAGAATGCGCAAGCCGGGGATAGGCCCGGTCCCCCTACGCGTGCTGCC
* * * * * *
32401162 GGTCCTGCTACCACAACCCTTGATCCGGTTG
127 GATCCTGCTGCCGCAACCCTCGGTCCGGTTC
** * * ** * * *
32401193 GGGCTTAGACATTGAATGAACTCCCTATGGCTAAGCCAACAAATGAAATGGGCGTGTGGGTGCTC
1 GATCTTAGACATGGAATGAACTCCGTAT-GCTAAGCCAACCCATGAAACGAGCGTGTGGGCGCTC
* * * * *
32401258 AGTCAACCGGAGAGGTAGAATACGCAAGCTGGGGATTGGCTCGGTCCCCCCTA--CGTGCTGCCG
65 AG-CAACCGGAGAGGCAGAATGCGCAAGCCGGGGATAGGCCCGGT-CCCCCTACGCGTGCTGCCG
*
32401321 ATCCTGCTGTCGCAACCCTCGGTCCGG-TC
128 ATCCTGCTGCCGCAACCCTCGGTCCGGTTC
*
32401350 TGATCTTAGAC-TGGGAATGAACTCCATATGCT
1 -GATCTTAGACAT-GGAATGAACTCCGTATGCT
32401382 TAGACTGGGG
Statistics
Matches: 281, Mismatches: 55, Indels: 26
0.78 0.15 0.07
Matches are distributed among these distances:
157 5 0.02
158 57 0.20
159 203 0.72
160 16 0.06
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (157 bp):
GATCTTAGACATGGAATGAACTCCGTATGCTAAGCCAACCCATGAAACGAGCGTGTGGGCGCTCA
GCAACCGGAGAGGCAGAATGCGCAAGCCGGGGATAGGCCCGGTCCCCCTACGCGTGCTGCCGATC
CTGCTGCCGCAACCCTCGGTCCGGTTC
Found at i:32401390 original size:26 final size:26
Alignment explanation
Indices: 32401354--32401406 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
32401344 CCGGTCTGAT
32401354 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
32401380 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
32401406 C
1 C
32401407 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:32401739 original size:173 final size:171
Alignment explanation
Indices: 32401379--32402169 Score: 526
Period size: 158 Copynumber: 4.8 Consensus size: 171
32401369 AACTCCATAT
* * * *
32401379 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAG-TGTGCGGGCGCTCA
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCT-TGCAGGCACTCA
* * * *
32401443 GCCGGCTGAAGAGGCATAATGCGCAAGTCGGGGATCAGCCCGATCCCCCTCTGCGTGCTGTCGAT
65 GCCGGCCGAAGAGGCAAAATGCGCAAGCCAGGGATCAGCCCGATCCCCCTCTGCGTGCTGTCGAT
* *
32401508 CCCGCTACCGGTCCTACTGCCACAACCCTCGGCCCGGCTGGG
130 CCCGCTACCGGTCCTACTGCCACAACCCTCGACCCGGCTGGA
*
32401550 GCTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCTTGCAGGCACTCA
1 GCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCTTGCAGGCACTCA
* * *
32401614 GCTTGCGGCCGAAGAGGCAAAATGCGCAAGCCAGGGATCGGGCCGGTCCCCCT-TGCGTGCTGTC
65 GC---CGGCCGAAGAGGCAAAATGCGCAAGCCAGGGATCAGCCCGATCCCCCTCTGCGTGCTGTC
* * * * ** * * * * *
32401678 GATCCTGCTGCTGGTCCTACTGTCGTAACCCTTGATCTGGTTTGA
127 GATCCCGCTACCGGTCCTACTGCCACAACCCTCGACCCGGCTGGA
* * * * * *
32401723 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAATGAGCGTGCAAGCACTCAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCTTGCAGGCACTCAG
* * * *
32401788 CCAGCC-AGAGAGGCAGAATGCGCAAGCC-GAGGA-CTGGCCCGATCCTCCC-CTGCGTGTTGTC
66 CCGGCCGA-AGAGGCAAAATGCGCAAGCCAG-GGATC-AGCCCGATCC-CCCTCTGCGTGCTGTC
* * ** **
32401849 GAT----CT-----T-GT--TGTCGTAACCCTCGATTCGGTCT-GA
127 GATCCCGCTACCGGTCCTACTGCCACAACCCTCGACCCGG-CTGGA
* * ** * * ** ** * *
32401882 TCTTATACTAAGAATGAACTCTGTATGCCTAAGTCAACCCATGAAATAAGCGAGCAGGCGCTGAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCTTGCAGGCACTCAG
* * * * * *
32401947 CTGGCC-AGAGAGGCATAACGCGTAAG-CTGGGATCAGCCCGGTCCCCCTCTGCGTGCTGTCG--
66 CCGGCCGA-AGAGGCAAAATGCGCAAGCCAGGGATCAGCCCGATCCCCCTCTGCGTGCTGTCGAT
* * *** *
32402008 ---G-T-CCCG--CTA---CCACAACCCTTGGTTCGGCTGGG
130 CCCGCTACCGGTCCTACTGCCACAACCCTCGACCCGGCTGGA
* * * *
32402040 GCTTAGACAT-GGAATGAACTCCTTATGCCTAAGCCAACCCACGAAATG-GACGTGC-GAGCACT
1 GCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAG-CTTGCAG-GCACT
* * *
32402102 CAGCCGACC-AGAGAGGCAAAATGCGCAAGCCAGGGATCGGCCCGATCCCCCTC-GCGTGCCGTC
63 CAGCCGGCCGA-AGAGGCAAAATGCGCAAGCCAGGGATCAGCCCGATCCCCCTCTGCGTGCTGTC
32402165 GATCC
127 GATCC
32402170 TGCTGTCGTA
Statistics
Matches: 501, Mismatches: 89, Indels: 69
0.76 0.14 0.10
Matches are distributed among these distances:
156 1 0.00
157 7 0.01
158 117 0.23
159 117 0.23
160 1 0.00
161 1 0.00
162 1 0.00
167 2 0.00
169 3 0.01
170 34 0.07
171 73 0.15
172 3 0.01
173 100 0.20
174 41 0.08
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (171 bp):
GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCTTGCAGGCACTCAG
CCGGCCGAAGAGGCAAAATGCGCAAGCCAGGGATCAGCCCGATCCCCCTCTGCGTGCTGTCGATC
CCGCTACCGGTCCTACTGCCACAACCCTCGACCCGGCTGGA
Found at i:32402225 original size:158 final size:157
Alignment explanation
Indices: 32401721--32402225 Score: 495
Period size: 158 Copynumber: 3.2 Consensus size: 157
32401711 GATCTGGTTT
* *
32401721 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAATGAGCGTGCAAGCACTC
1 GATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCGTGC-AGCACTC
* *
32401786 AGCC-AGCCAGAGAGGCAGAATGCGCAAGCCGAGGA-CTGGCCCGATCCTCCC-CTGCGTGTTGT
65 AGCCGA-CCAGAGAGGCAAAATGCGCAAGCCG-GGATC-GGCCCGATCC-CCCTCTGCGTGCTGT
* * * *
32401848 CGATCTTGTTGTCGTAACCCTCGATTCGGTCT
126 CGATCCTGCTGTCGTAACCCTCGGTTCGGTCC
* ** * * * * * *
32401880 GATCTTATACTAAGAATGAACTCTGTATGCCTAAGTCAACCCATGAAATAAGCGAGCAGGCGCTG
1 GATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCGTGCA-GCACTC
* * * * * * * * *
32401945 AGCTGGCCAGAGAGGCATAACGCGTAAGCTGGGATCAGCCCGGTCCCCCTCTGCGTGCTGTCGGT
65 AGCCGACCAGAGAGGCAAAATGCGCAAGCCGGGATCGGCCCGATCCCCCTCTGCGTGCTGTCGAT
* ** ** * *
32402010 CCCGCTACCACAACCCTTGGTTCGG-CTG
130 CCTGCTGTCGTAACCCTCGGTTCGGTC-C
**
32402038 GGGCTTAGACAT-GGAATGAACTCCT-TATGCCTAAGCCAACCCACGAAATG-GACGTGCGAGCA
1 GATCTTAGAC-TGGGAATGAACT-CTGTATGCCTAAGCCAACCCACGAAATGAG-CGTGC-AGCA
*
32402100 CTCAGCCGACCAGAGAGGCAAAATGCGCAAGCCAGGGATCGGCCCGATCCCCCTC-GCGTGCCGT
62 CTCAGCCGACCAGAGAGGCAAAATGCGCAAGCC-GGGATCGGCCCGATCCCCCTCTGCGTGCTGT
* *
32402164 CGATCCTGCTGTCGTAACTCTCGGTCCGGTCC
126 CGATCCTGCTGTCGTAACCCTCGGTTCGGTCC
*
32402196 AATCTTAGACTGGGAATGAACTCTGTATGC
1 GATCTTAGACTGGGAATGAACTCTGTATGC
32402226 TTAGACTGGG
Statistics
Matches: 270, Mismatches: 63, Indels: 27
0.75 0.17 0.08
Matches are distributed among these distances:
157 8 0.03
158 161 0.60
159 101 0.37
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (157 bp):
GATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCGTGCAGCACTCA
GCCGACCAGAGAGGCAAAATGCGCAAGCCGGGATCGGCCCGATCCCCCTCTGCGTGCTGTCGATC
CTGCTGTCGTAACCCTCGGTTCGGTCC
Found at i:32402235 original size:26 final size:26
Alignment explanation
Indices: 32402199--32402251 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
32402189 CCGGTCCAAT
*
32402199 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
32402225 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
32402251 C
1 C
32402252 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:32404865 original size:153 final size:151
Alignment explanation
Indices: 32404627--32405197 Score: 721
Period size: 153 Copynumber: 3.7 Consensus size: 151
32404617 CAGGATCAGT
* * * * ** ** *
32404627 AGCACGCAGGTGGGACCGGGCCGATCCACGGCTTACGCATTCTGCCTCTTCGGCCTGCTCAGCGC
1 AGCATGCAGGGGGGATCGGGCCGATCCCCGGCTTACGCATTCTTTCTCCCCGACC-GCTCAGCGC
*
32404692 CC-GACCGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAAGATTGGACCGGATC
65 CCGGA-CGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAAGATTGGACCGGA-C
* * *
32404756 GAGGGTTACGACAGCAGGATCGAC
128 GAAGGTTGCGGCAGCAGGATCGAC
* *
32404780 AGCATGCAGGGGGGATCGGGCCGATCCCCGGCTAATGCATTCTTTCTCCCCGACCGACTCAGCGC
1 AGCATGCAGGGGGGATCGGGCCGATCCCCGGCTTACGCATTCTTTCTCCCCGACCG-CTCAGCGC
* * *
32404845 CCGGATGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAAGATTGGATCGAACCG
65 CCGGACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAAGATTGGACCGGA-CG
32404910 AAGGTTGCGGCAGCAGGATCGAC
129 AAGGTTGCGGCAGCAGGATCGAC
* * *
32404933 AGCATGCAAGGGGAATCGGGTCGATCCCCGGCTTACGCATTCTTTCTCCCCGACCGGCTCAGCGC
1 AGCATGCAGGGGGGATCGGGCCGATCCCCGGCTTACGCATTCTTTCTCCCCGACC-GCTCAGCGC
* *
32404998 CTGGACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAAGATTGGACCGGACAG
65 CCGGACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAAGATTGGACCGGAC-G
*
32405063 AAGGTTGCGGCAGCAGGATCAAC
129 AAGGTTGCGGCAGCAGGATCGAC
* ** ** * * * *
32405086 AGCATGCAGGGGGGACCGGGCCGATCCCCGGCTTGGGCATTCTGCCTCTCCGGCCTGCTGAGAGC
1 AGCATGCAGGGGGGATCGGGCCGATCCCCGGCTTACGCATTCTTTCTCCCCGACC-GCTCAGCGC
* ** * *
32405151 CCGCACGCTTGTTTCATGGGTTGGCTTAGGTATACGGAGTTCATTCC
65 CCGGACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCC
32405198 ATGTCTAAGC
Statistics
Matches: 366, Mismatches: 48, Indels: 8
0.87 0.11 0.02
Matches are distributed among these distances:
152 2 0.01
153 361 0.99
154 3 0.01
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.22
Consensus pattern (151 bp):
AGCATGCAGGGGGGATCGGGCCGATCCCCGGCTTACGCATTCTTTCTCCCCGACCGCTCAGCGCC
CGGACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAAGATTGGACCGGACGAA
GGTTGCGGCAGCAGGATCGAC
Found at i:32406210 original size:159 final size:157
Alignment explanation
Indices: 32405978--32406420 Score: 462
Period size: 159 Copynumber: 2.8 Consensus size: 157
32405968 GCAGTAGGAT
** * *
32405978 CGACAGCATGCAGGGGGGACCGAGTC-GATCCCCGGCTTGCGCATTCA-GCCTCTCCGGTCGGCT
1 CGACAGCACACAGGGGGGATC-AGGCTGATCCCCGGCTTGCGCATT-ATGCCTCTCCGGTCGGCT
* * * * * * *
32406041 GAGTGACCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCC
64 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCC
* * * **
32406106 CAGCCGAACTGAGGGTTGTGGCAGCGGGAC
129 CAGCAG-ACTGAAGGTTGCGGCAGCAAGAC
* ** *
32406136 CGACAGTACGTAGAGGGGGA-CTAGGCTGATCCCTGGCTTGCGCATTATGCCTCTCCGGTCGGCT
1 CGACAGCACACAG-GGGGGATC-AGGCTGATCCCCGGCTTGCGCATTATGCCTCTCCGGTCGGCT
* *
32406200 CAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCTCA-GTCTAAGAT
64 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC-CATGTCTAAG-C
** * * * *
32406264 CGGATCAGATTGAAGGTTGCGGTAGCAAGAT
127 CCCAGCAGACTGAAGGTTGCGGCAGCAAGAC
* * * * * *
32406295 CGATAGCACACAGGGGGGATCGGGCTGATCCCCGGCTTGTGCATTCTACCTCTCCAGTCGGCTGA
1 CGACAGCACACAGGGGGGATCAGGCTGATCCCCGGCTTGCGCATTATGCCTCTCCGGTCGGCTGA
* * *
32406360 GCGCCCACACACTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCATGTCTAAGC
66 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGC
32406421 ATACAGAGTT
Statistics
Matches: 237, Mismatches: 41, Indels: 15
0.81 0.14 0.05
Matches are distributed among these distances:
157 2 0.01
158 112 0.47
159 117 0.49
160 6 0.03
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (157 bp):
CGACAGCACACAGGGGGGATCAGGCTGATCCCCGGCTTGCGCATTATGCCTCTCCGGTCGGCTGA
GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCA
GCAGACTGAAGGTTGCGGCAGCAAGAC
Found at i:32406365 original size:158 final size:157
Alignment explanation
Indices: 32405928--32406419 Score: 526
Period size: 158 Copynumber: 3.1 Consensus size: 157
32405918 GCATACAAAC
* * * *
32405928 TTCATTCCCA-GTCTAAGATCGGATCAGACCGAGGGTTGCAGCAGTAGGATCGACAGCATGCAGG
1 TTCATT-CCATGTCTAAGATCGGATCAGACTGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGG
* * *
32405992 GGGGACCGAG-TCGATCCCCGGCTTGCGCATTC-AGCCTCTCCGGTCGGCTGAGTGACCGCACGC
65 GGGGA-CGGGCT-GATCCCCGGCTTGCGCATTCTA-CCTCTCCGGTCGGCTGAGCGCCCGCACGC
* * * * *
32406055 CCATTTCATGGGTTGGCTTAGGCATAGGGAG
127 TCGTTTCGTGGGTTGACTTAGGCATACGGAG
* ** * * * * * * *
32406086 TTCATTCCATGTCTAAG-CCCCAGCCGAACTGAGGGTTGTGGCAGCGGGACCGACAGTACGTAGA
1 TTCATTCCATGTCTAAGATCGGATCAG-ACTGAGGGTTGCGGCAGCAGGATCGACAGCACGCAG-
* * * * *
32406150 GGGGGACTAGGCTGATCCCTGGCTTGCGCATTATGCCTCTCCGGTCGGCTCAGCGCCCGCACGCT
64 GGGGGAC-GGGCTGATCCCCGGCTTGCGCATTCTACCTCTCCGGTCGGCTGAGCGCCCGCACGCT
32406215 CGTTTCGTGGGTTGACTTAGGCATACGGAG
128 CGTTTCGTGGGTTGACTTAGGCATACGGAG
* * * * * *
32406245 TTCATTCTCA-GTCTAAGATCGGATCAGATTGAAGGTTGCGGTAGCAAGATCGATAGCACACAGG
1 TTCATTC-CATGTCTAAGATCGGATCAGACTGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGG
* * * *
32406309 GGGGATCGGGCTGATCCCCGGCTTGTGCATTCTACCTCTCCAGTCGGCTGAGCGCCCACACACTC
65 GGGGA-CGGGCTGATCCCCGGCTTGCGCATTCTACCTCTCCGGTCGGCTGAGCGCCCGCACGCTC
*
32406374 GTTTCGTGGGTTGACTTAGGCATACAGAG
129 GTTTCGTGGGTTGACTTAGGCATACGGAG
32406403 TTCATTCCATGTCTAAG
1 TTCATTCCATGTCTAAG
32406420 CATACAGAGT
Statistics
Matches: 271, Mismatches: 53, Indels: 20
0.79 0.15 0.06
Matches are distributed among these distances:
157 9 0.03
158 138 0.51
159 117 0.43
160 7 0.03
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (157 bp):
TTCATTCCATGTCTAAGATCGGATCAGACTGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGGG
GGGACGGGCTGATCCCCGGCTTGCGCATTCTACCTCTCCGGTCGGCTGAGCGCCCGCACGCTCGT
TTCGTGGGTTGACTTAGGCATACGGAG
Found at i:32406471 original size:26 final size:26
Alignment explanation
Indices: 32406393--32406461 Score: 120
Period size: 26 Copynumber: 2.7 Consensus size: 26
32406383 GTTGACTTAG
32406393 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATGTCTAA
*
32406419 GCATACAGAGTTCATTCCATGACTAA
1 GCATACAGAGTTCATTCCATGTCTAA
*
32406445 GCATACGGAGTTCATTC
1 GCATACAGAGTTCATTC
32406462 GTAGTCTAAG
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 41 1.00
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.29
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGTCTAA
Found at i:32406828 original size:25 final size:26
Alignment explanation
Indices: 32406800--32406849 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 26
32406790 GTTGACTTAG
32406800 GCATACGGAGTTCA-CCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
32406825 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATCCCCAGTCTA
32406850 TAATTGGATC
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 14 0.61
26 9 0.39
ACGTcount: A:0.26, C:0.30, G:0.20, T:0.24
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:32413948 original size:26 final size:26
Alignment explanation
Indices: 32413918--32413970 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
32413908 GTTGACTTAG
* *
32413918 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
*
32413944 GCATACGAAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
32413970 G
1 G
32413971 ATCGGATTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:32414174 original size:184 final size:184
Alignment explanation
Indices: 32413844--32414188 Score: 467
Period size: 184 Copynumber: 1.9 Consensus size: 184
32413834 TACCACCCGT
* * * * *
32413844 TCGATCCCCGGCTTGCGCATCCTGCCTCTCTGGTCGGCTGAGCGCCTGCACGCTCATTTCATGGG
1 TCGATCCCCGGCTTGCGCATCCTGCCTCTCCGCTCGGCAGAGCACCCGCACGCTCATTTCATGGG
*
32413909 TTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAATCTAAGATC
66 TTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAATCTAAGATC
* * * * *
32413974 GGATTGGACGAAGGGTTGCGGCAGCAGGATCGACAGCATGCAGGGGGGATCGAG
131 AGACTAGACCAAGGGTTGCGACAGCAGGATCGACAGCATGCAGGGGGGATCGAG
* * * *
32414028 TCGATCCCTGGCTTGCGCATTCTGCCTCTCCGACT-GGCAGAGCACCCGCACGCTCGTTTCGTGG
1 TCGATCCCCGGCTTGCGCATCCTGCCTCTCCG-CTCGGCAGAGCACCCGCACGCTCATTTCATGG
* * ** ** *
32414092 GTTGGCTTAGGCATACAGAGTTCATTCCGTGTCTAAGCATACGAAGTTCATTCCCGGTCTGAGAT
65 GTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAATCTAAGAT
*
32414157 CAGACTAGACCAAGGGTTGCGACAGTAGGATC
130 CAGACTAGACCAAGGGTTGCGACAGCAGGATC
32414189 AGTAGCACGC
Statistics
Matches: 137, Mismatches: 23, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
184 136 0.99
185 1 0.01
ACGTcount: A:0.20, C:0.28, G:0.28, T:0.24
Consensus pattern (184 bp):
TCGATCCCCGGCTTGCGCATCCTGCCTCTCCGCTCGGCAGAGCACCCGCACGCTCATTTCATGGG
TTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAATCTAAGATC
AGACTAGACCAAGGGTTGCGACAGCAGGATCGACAGCATGCAGGGGGGATCGAG
Found at i:32414305 original size:177 final size:177
Alignment explanation
Indices: 32413881--32414305 Score: 480
Period size: 184 Copynumber: 2.4 Consensus size: 177
32413871 CTCTGGTCGG
* * * *
32413881 CTGAGCGCCTGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
1 CTGAGCGCCTGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGC
* * * * *
32413946 ATACGAAGTTCATTCCCAATCTAAGATCGGATTGGACGAAGGGTTGCGGCAGCAGGATCGACAGC
66 ATACGAAGTTCATTCCCAATCTAAGATCAGACTAGACCAAGGGTTGCGACAGCAGGATCGACAGC
* * * * *
32414011 ATGCAGGGGGGATCGAGTCGATCCCTGGCTTGCGCATTCTGCCTCTCCGA
131 ACGCAGGGGGGACCAAGTCGATCCCTGGCTTACGCATTCTG---CACCGA
* * * **
32414061 CTGGCAGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCGTGTCT
1 CT----GAGCGCCTGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCT
** * *
32414126 AAGCATACGAAGTTCATTCCCGGTCTGAGATCAGACTAGACCAAGGGTTGCGACAGTAGGATC-A
62 AAGCATACGAAGTTCATTCCCAATCTAAGATCAGACTAGACCAAGGGTTGCGACAGCAGGATCGA
* *
32414190 GTAGCACGCAGAGGGGGACCAAG-CAGAT-CCTCGGCTTATGCATTCTG-ACCGA
127 -CAGCACGCAG-GGGGGACCAAGTC-GATCCCT-GGCTTACGCATTCTGCACCGA
* *
32414242 CTGAGCGCCTGTACGCTCGTTTCATGGGTTGGCTTAAGCATACAGAGTTCATTCCCAGTCTAAG
1 CTGAGCGCCTGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAG
32414306 ATTTTGAGCC
Statistics
Matches: 205, Mismatches: 32, Indels: 19
0.80 0.12 0.07
Matches are distributed among these distances:
177 55 0.27
180 2 0.01
181 6 0.03
183 1 0.00
184 116 0.57
185 25 0.12
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.24
Consensus pattern (177 bp):
CTGAGCGCCTGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGC
ATACGAAGTTCATTCCCAATCTAAGATCAGACTAGACCAAGGGTTGCGACAGCAGGATCGACAGC
ACGCAGGGGGGACCAAGTCGATCCCTGGCTTACGCATTCTGCACCGA
Found at i:32415472 original size:158 final size:161
Alignment explanation
Indices: 32415078--32415513 Score: 487
Period size: 159 Copynumber: 2.7 Consensus size: 161
32415068 AGATCGGCAA
* * * *
32415078 CACGCAGA-AGGGACCAGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGACTGAGCGCC
1 CACGCAGAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCTGGTCGACTGAGCGCC
* * * * *
32415142 TGCACGCCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCT--GATTCCCAGTC
66 CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGATTCCCAGCC
* * *
32415205 AGACTGAGGGTTGTGGCAGCGAGACTGGCAG
131 AGACCGAGGGTTGTGGCAGAGAGACTGACAG
* * * * *
32415236 CACGCAGAGGGGGATCGGGTCGATCCCCGGCTTGCACATTATGCCTCT-TCGGTC-AGCTCAGTG
1 CACGCAGAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCT-GGTCGA-CTGAGCG
* * * * **
32415299 CCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACGGAATTCATTCCCTGTCTAAGATT-GGA-
64 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGATTCCCAG
*
32415362 CCGGACCGAGGGTTGTGGCAGTAG-GA-TCGACAG
129 CCAGACCGAGGGTTGTGGCAG-AGAGACT-GACAG
* * * *
32415395 CATGTAG-GGGGGACCGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTCTGGCCGACTGAGCGCC
1 CACGCAGAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCTGGTCGACTGAGCGCC
* * *
32415459 CGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCGTTCCATGTCTAAG
66 CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
32415514 CATACGGAGT
Statistics
Matches: 229, Mismatches: 40, Indels: 18
0.80 0.14 0.06
Matches are distributed among these distances:
158 104 0.45
159 119 0.52
160 2 0.01
161 4 0.02
ACGTcount: A:0.17, C:0.27, G:0.31, T:0.25
Consensus pattern (161 bp):
CACGCAGAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCTGGTCGACTGAGCGCC
CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGATTCCCAGCC
AGACCGAGGGTTGTGGCAGAGAGACTGACAG
Found at i:32415530 original size:26 final size:26
Alignment explanation
Indices: 32415487--32415539 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
32415477 GTTGGCTTAG
*
32415487 GCATACGGAGTTCGTT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
32415513 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
32415539 G
1 G
32415540 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:32416715 original size:26 final size:26
Alignment explanation
Indices: 32416678--32416730 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
32416668 GTTGGCTTAG
32416678 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
* *
32416704 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
32416730 G
1 G
32416731 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:32417448 original size:26 final size:26
Alignment explanation
Indices: 32417412--32417464 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
32417402 GTTGACTTAG
32417412 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
*
32417438 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
32417464 G
1 G
32417465 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATATGGAGTTCATCCCCAGTCTAA
Found at i:32417759 original size:159 final size:157
Alignment explanation
Indices: 32417567--32417979 Score: 384
Period size: 157 Copynumber: 2.6 Consensus size: 157
32417557 GACTAAGCAC
* ** * * *
32417567 CCGCACGCCCGTTTTATGGATTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGTCG
1 CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCTAGTCG
* * * * * *
32417632 GACCGAGGGTTGTGGCAGCGGGACCGACAGCACGTAGAGTGGGACTGGGCCAAT-CCCTATTTTG
66 GACCGAGGGTTGTGGCAGCAGGACCGACAGCACGCAG-G-GGGACCGAGCCAATCCCCGA-CTTG
* *
32417696 CATATTATGCCTCTTCGGCCGACTCAGCG-
128 CACATTATGCCTCTCCGGCCGACTCAGCGT
* * * * ** *
32417725 CCTGCACGCTCTTTTCGTGGTTTGTCTTATGCATACGAAGTTCATTCC-TAGTCTAAG-ATTGGA
1 CC-GCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCAT-GTCTAAGCCCTAG-
* ** * * * * * * * *
32417788 TCAGATTGAGGGTTGTAGCAGTAGGATCAATAGAATGCAGGGGGACCGAGCCGATCCCCGACTTG
63 TCGGACCGAGGGTTGTGGCAGCAGGACCGACAGCACGCAGGGGGACCGAGCCAATCCCCGACTTG
* * * * *
32417853 CGCATTCTGCCTCTCCGGCTGGCTGAGCGT
128 CACATTATGCCTCTCCGGCCGACTCAGCGT
*
32417883 CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAGTCG
1 CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCTAGTCG
* *
32417948 GACCGAGGGTTGTGGCAACAGGACAGACAGCA
66 GACCGAGGGTTGTGGCAGCAGGACCGACAGCA
32417980 GGAGTTACAG
Statistics
Matches: 193, Mismatches: 55, Indels: 15
0.73 0.21 0.06
Matches are distributed among these distances:
157 108 0.56
158 14 0.07
159 71 0.37
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (157 bp):
CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCTAGTCG
GACCGAGGGTTGTGGCAGCAGGACCGACAGCACGCAGGGGGACCGAGCCAATCCCCGACTTGCAC
ATTATGCCTCTCCGGCCGACTCAGCGT
Found at i:32418133 original size:26 final size:26
Alignment explanation
Indices: 32418083--32418135 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32418073 GTTGGCTTAG
*
32418083 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAATCTAA
32418109 GCATACGGAGTTCATTCCC-AATCTAA
1 GCATACGGAGTTCA-TCCCTAATCTAA
32418135 G
1 G
32418136 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAATCTAA
Found at i:32418397 original size:158 final size:159
Alignment explanation
Indices: 32418109--32418758 Score: 573
Period size: 158 Copynumber: 4.1 Consensus size: 159
32418099 CCTAGTCTAA
* * * ** * **
32418109 GCATACGGAGTTCATTCCCAATCTAAGATCGGA-TCGGACCGAGGGTTGTGGCAGTAGGAGCGGT
1 GCATACGGAGTTCATTCCCAATCTAAGATCCGACTCAGACCGAGGGTTGCGGCAACAGGATCGAC
* * * **
32418173 AGCATGCATGGGGGATC-GGTCCGATCCTCAGCTCACGCATTATGCCTCTTCGACCGGCTCAGCA
66 AGCACGCAGGGGGGATCGGGT-CGATCCCCAGCTTGCGCATTATGCCTCTTCGACCGGCTCAGCA
* *
32418237 CCCACACGCTTGTTTCATGGGTTGACTTAT
130 CCCACACGCTCGTTTCGTGGGTTGACTTAT
*
32418267 GCATACGGAGTTCATTCCCAATCTAAGATCCGACT-GGACCGAGGGTTGCGGCAACAGGATCGAC
1 GCATACGGAGTTCATTCCCAATCTAAGATCCGACTCAGACCGAGGGTTGCGGCAACAGGATCGAC
* * * * * ** *
32418331 AGCACGTAGGGGGGATCGGGTCGATCCTCGGCTTGTGCATTCTGCCTC-TCTGGTCGGCTGAGCA
66 AGCACGCAGGGGGGATCGGGTCGATCCCCAGCTTGCGCATTATGCCTCTTC-GACCGGCTCAGCA
** * * *
32418395 CCCGTACGCTCATTTCGTGGGTTGGCTTAG
130 CCCACACGCTCGTTTCGTGGGTTGACTTAT
* * * * * * * * * *
32418425 GCATACAGAGTTCATT-CCATGTCTAAG-CCCCAGTCAAATCGAGGGTTGTGGCAGCAGGATCGG
1 GCATACGGAGTTCATTCCCA-ATCTAAGATCCGACTCAGACCGAGGGTTGCGGCAACAGGATCGA
* * * * * ** *
32418488 CAGCACGCAGAGGGGGA-CCGATCGATCCCCGGCTTGCGCATTATGGCTCTTTGGTCGGCTCAGT
65 CAGCACGCAG-GGGGGATCGGGTCGATCCCCAGCTTGCGCATTATGCCTCTTCGACCGGCTCAGC
* *
32418552 GCCTACACGCTCGTTTCGTGGGTTGACTTAT
129 ACCCACACGCTCGTTTCGTGGGTTGACTTAT
* * ** * ** * *
32418583 GCATACGGACTTCATTCCCAGTCTAAGATTAGAC-CAGACTGAGGGTTGC-AAAAGTAGGATCTA
1 GCATACGGAGTTCATTCCCAATCTAAGATCCGACTCAGACCGAGGGTTGCGGCAA-CAGGATCGA
* * * * *
32418646 CAGCACGTAGGGGGGATCGGGTCGATCCCCAGCTTGCCCATTCTGCCTCTTCGACCGGCTGAGCG
65 CAGCACGCAGGGGGGATCGGGTCGATCCCCAGCTTGCGCATTATGCCTCTTCGACCGGCTCAGCA
** * *
32418711 CCGGCACGCTCGTTTCGCGGGTTGGCTT-T
130 CCCACACGCTCGTTTCGTGGGTTGACTTAT
32418740 GGCATACGGAGTTCATTCC
1 -GCATACGGAGTTCATTCC
32418759 ATGTCTAAGC
Statistics
Matches: 393, Mismatches: 87, Indels: 24
0.78 0.17 0.05
Matches are distributed among these distances:
157 17 0.04
158 361 0.92
159 15 0.04
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCCAATCTAAGATCCGACTCAGACCGAGGGTTGCGGCAACAGGATCGAC
AGCACGCAGGGGGGATCGGGTCGATCCCCAGCTTGCGCATTATGCCTCTTCGACCGGCTCAGCAC
CCACACGCTCGTTTCGTGGGTTGACTTAT
Found at i:32418690 original size:316 final size:316
Alignment explanation
Indices: 32418148--32418768 Score: 798
Period size: 316 Copynumber: 2.0 Consensus size: 316
32418138 CGGATCGGAC
* * * * * * *
32418148 CGAGGGTTGTGGCAGTAGGAGCGGTAGCATGCATGGGGGATCGGTCCGATCCTCAGCTCACGCAT
1 CGAGGGTTGTGGCAGCAGGAGCGGCAGCACGCAAGGGGGACCGATCCGATCCCCAGCTCACGCAT
* *
32418213 TATGCCTCTTCGACCGGCTCAGCACCCACACGCTTGTTTCATGGGTTGACTTATGCATACGGAGT
66 TATGCCTCTTCGACCGGCTCAGCACCCACACGCTCGTTTCATGGGTTGACTTATGCATACGGACT
* ** **
32418278 TCATTCCCAATCTAAGATCCGACTGGACCGAGGGTTGCGGCAACAGGATCGACAGCACGTAGGGG
131 TCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCGAAAACAGGATCGACAGCACGTAGGGG
* * ** ** *
32418343 GGATCGGGTCGATCCTCGGCTTGTGCATTCTGCCTC-TCTGGTCGGCTGAGCACCCGTACGCTCA
196 GGATCGGGTCGATCCCCAGCTTGCCCATTCTGCCTCTTC-GACCGGCTGAGCACCCGCACGCTCA
*
32418407 TTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGTCAAAT
260 TTTCGCGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGTCAAAT
* * **
32418464 CGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCGAT-CGATCCCCGGCTTGCGCA
1 CGAGGGTTGTGGCAGCAGGAGCGGCAGCACGCA-AGGGGGACCGATCCGATCCCCAGCTCACGCA
* * ** ** * *
32418528 TTATGGCTCTTTGGTCGGCTCAGTGCCTACACGCTCGTTTCGTGGGTTGACTTATGCATACGGAC
65 TTATGCCTCTTCGACCGGCTCAGCACCCACACGCTCGTTTCATGGGTTGACTTATGCATACGGAC
* * * * *
32418593 TTCATTCCCAGTCTAAGATTAGACCAGACTGAGGGTTGC-AAAAGTAGGATCTACAGCACGTAGG
130 TTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCGAAAA-CAGGATCGACAGCACGTAGG
* *
32418657 GGGGATCGGGTCGATCCCCAGCTTGCCCATTCTGCCTCTTCGACCGGCTGAGCGCCGGCACGCTC
194 GGGGATCGGGTCGATCCCCAGCTTGCCCATTCTGCCTCTTCGACCGGCTGAGCACCCGCACGCTC
* * *
32418722 GTTTCGCGGGTTGGCTTTGGCATACGGAGTTCATTCCATGTCTAAGC
259 ATTTCGCGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGC
32418769 ATACGGAGTT
Statistics
Matches: 258, Mismatches: 44, Indels: 6
0.84 0.14 0.02
Matches are distributed among these distances:
315 2 0.01
316 245 0.95
317 11 0.04
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (316 bp):
CGAGGGTTGTGGCAGCAGGAGCGGCAGCACGCAAGGGGGACCGATCCGATCCCCAGCTCACGCAT
TATGCCTCTTCGACCGGCTCAGCACCCACACGCTCGTTTCATGGGTTGACTTATGCATACGGACT
TCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCGAAAACAGGATCGACAGCACGTAGGGG
GGATCGGGTCGATCCCCAGCTTGCCCATTCTGCCTCTTCGACCGGCTGAGCACCCGCACGCTCAT
TTCGCGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGTCAAAT
Found at i:32418777 original size:26 final size:26
Alignment explanation
Indices: 32418741--32418793 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
32418731 GTTGGCTTTG
32418741 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
32418767 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
32418793 G
1 G
32418794 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:32419493 original size:26 final size:26
Alignment explanation
Indices: 32419463--32419515 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
32419453 GTGGACTTAG
*
32419463 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
32419489 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
32419515 G
1 G
32419516 ATCGGACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:32419848 original size:26 final size:26
Alignment explanation
Indices: 32419811--32419863 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
32419801 GTTAACTTAG
*
32419811 GCATACGGAGTTC-TTCCCCAGTCTAA
1 GCATACGAAGTTCATT-CCCAGTCTAA
*
32419837 GCATACGAAGTTCATTCCCAGTGTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
32419863 G
1 G
32419864 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:32421081 original size:26 final size:26
Alignment explanation
Indices: 32421052--32421110 Score: 70
Period size: 26 Copynumber: 2.3 Consensus size: 26
32421042 GTTGACATAG
32421052 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
32421078 GCATA-TGAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATCCCCAGTCTAA
32421104 -CAT-CAGA
1 GCATACAGA
32421111 TCAGACCGAG
Statistics
Matches: 28, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
24 1 0.04
25 5 0.18
26 22 0.79
ACGTcount: A:0.32, C:0.27, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:32421460 original size:159 final size:159
Alignment explanation
Indices: 32421204--32421579 Score: 346
Period size: 159 Copynumber: 2.4 Consensus size: 159
32421194 CCAGCTGAGT
* * * * * * **
32421204 GCCCGCATGCCCATTTCGTGGGTTGGA-TTAGGCATAGGGAGTTCAATCCATGTCTAAGCCCTAG
1 GCCCGCACGCTCATTTCATGGGTT-AACTTAGGCATACGGAGTTCATTCCATGTCTAAGATC-AG
** ** * * * * *
32421268 -TTGGAT-GAAGGGTTGTGGTAGTGGGACCGACAGCACGCAGACGGGGACTGGGCCTATCCCTGG
64 ATCAGATCG-AGGGTTGTGGTAGCAGGACCAACAGCACACAGACGGGGACCGGGCCAATCCCCGG
* * **
32421331 CTTCCACATTATGCCTCTTCGATCGGCTCAGT
128 CTTACACATTATGCCTCTCCGATCGGCTCAAC
* *
32421363 GCCCGCACGCTCGTTTCATGGGTTAACTTATGCATACGGAGTTCATTCC-TAGTCTAAGATCAGA
1 GCCCGCACGCTCATTTCATGGGTTAACTTAGGCATACGGAGTTCATTCCAT-GTCTAAGATCAGA
* * ** *
32421427 TCAGATCGAGGGTTGTGGTAGCAGGATCAACAGCACATAGGGGGGGACCGGGTCAATCCCCGGCT
65 TCAGATCGAGGGTTGTGGTAGCAGGACCAACAGCACACAGACGGGGACCGGGCCAATCCCCGGCT
* * * *
32421492 TACGCATTCTGCCTCTCCGGTCGGCTGAAC
130 TACACATTATGCCTCTCCGATCGGCTCAAC
* * * ** *
32421522 GCCCGCACGTTCATTTCGTGGTTTGGCTTAGGCATACGGAGTTGATTCCATGTCTAAG
1 GCCCGCACGCTCATTTCATGGGTTAACTTAGGCATACGGAGTTCATTCCATGTCTAAG
32421580 CATACGGAGT
Statistics
Matches: 172, Mismatches: 40, Indels: 10
0.77 0.18 0.05
Matches are distributed among these distances:
158 4 0.02
159 166 0.97
160 2 0.01
ACGTcount: A:0.20, C:0.25, G:0.29, T:0.26
Consensus pattern (159 bp):
GCCCGCACGCTCATTTCATGGGTTAACTTAGGCATACGGAGTTCATTCCATGTCTAAGATCAGAT
CAGATCGAGGGTTGTGGTAGCAGGACCAACAGCACACAGACGGGGACCGGGCCAATCCCCGGCTT
ACACATTATGCCTCTCCGATCGGCTCAAC
Found at i:32421589 original size:26 final size:26
Alignment explanation
Indices: 32421553--32421605 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32421543 TTTGGCTTAG
*
32421553 GCATACGGAGTTGATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
32421579 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
32421605 G
1 G
32421606 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:32422310 original size:26 final size:26
Alignment explanation
Indices: 32422274--32422326 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32422264 GTTAACTTAG
*
32422274 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
32422300 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
32422326 G
1 G
32422327 ATTAAACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:32423877 original size:26 final size:26
Alignment explanation
Indices: 32423840--32423892 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
32423830 GTTGACTTAG
*
32423840 GCATACAGAGTTCATCCCCAATCTAA
1 GCATACAAAGTTCATCCCCAATCTAA
* *
32423866 GCATACAAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAATCTAA
32423892 G
1 G
32423893 ATCGGACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.34, C:0.28, G:0.13, T:0.25
Consensus pattern (26 bp):
GCATACAAAGTTCATCCCCAATCTAA
Found at i:32424184 original size:158 final size:156
Alignment explanation
Indices: 32424005--32424356 Score: 418
Period size: 158 Copynumber: 2.2 Consensus size: 156
32423995 CGTACGTCCC
* * ** *
32424005 TTTTGTGGGTTGGTATAGGCATAGGGAGTTCATTCCATGTCTAAGCCTTAGCCAGACCGAGGGTT
1 TTTTGTGGGTTGCT-TAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAGGGTT
* * *
32424070 GTGGTAGCGGGACTGACAACACGTAGAAGGGGACCGGGTCGATCCCCAACTTGCGCATCTA-CCT
65 GTGGCAGCGGGACTGACAACACGTAGAAGGGGACCGAGTCGAT-CCCAACTTACGCAT-TAGCCT
* **
32424134 CTCCGACCGACTGAGCGCCTGCACGCTCA
128 CTCCGACCGACTCAGCGCCCACACGCTCA
**
32424163 TTTTGTGGGTTCGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACCAAGGGTT
1 TTTTGTGGGTT-GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAGGGTT
** * * * *
32424228 GTGGCAGCGGGACTGGTAGCACGTAGAGGGGGATCGAGTCGATCCCAGCTTACGCATTATGCCTC
65 GTGGCAGCGGGACTGACAACACGTAGAAGGGGACCGAGTCGATCCCAACTTACGCATTA-GCCTC
** *
32424293 TTTGACCGGCTCAGCGCCCACACGCTCA
129 TCCGACCGACTCAGCGCCCACACGCTCA
* * *
32424321 TTTCGTGGGTTGACTTATGCATACAGAGTTCATTCC
1 TTTTGTGGGTTG-CTTAGGCATACGGAGTTCATTCC
32424357 CAATCAAGCA
Statistics
Matches: 165, Mismatches: 25, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
156 2 0.01
157 13 0.08
158 148 0.90
159 2 0.01
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (156 bp):
TTTTGTGGGTTGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAGGGTTG
TGGCAGCGGGACTGACAACACGTAGAAGGGGACCGAGTCGATCCCAACTTACGCATTAGCCTCTC
CGACCGACTCAGCGCCCACACGCTCA
Found at i:32424749 original size:26 final size:26
Alignment explanation
Indices: 32424718--32424770 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
32424708 GTCGACTTAG
32424718 GCATACGGAGATCATCCCCAGTCTAA
1 GCATACGGAGATCATCCCCAGTCTAA
* *
32424744 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGATCATCCCCAGTCTAA
32424770 G
1 G
32424771 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACGGAGATCATCCCCAGTCTAA
Found at i:32425754 original size:26 final size:26
Alignment explanation
Indices: 32425718--32425768 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
32425708 TTGACTTAGG
32425718 CATACGGAGTTCATCCCCAATCTAAA
1 CATACGGAGTTCATCCCCAATCTAAA
* * *
32425744 CATATGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATCCCCAATCTAA
32425769 GATCAGATCG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAATCTAAA
Found at i:32426127 original size:159 final size:158
Alignment explanation
Indices: 32425744--32426401 Score: 521
Period size: 158 Copynumber: 4.2 Consensus size: 158
32425734 CCAATCTAAA
* * * *
32425744 CATATGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTACGACAGTAGGATCAGTA-
1 CATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGAGTTGCGACAGCAGGATC-G-AC
* * * * *
32425808 A-CACGTAGGGGGGATCGGGCCAATCCCCGGCTTGCGCATTTTGCCTC-TCTGGCTGGTTGAGCA
64 AGCACGTAGGGGGGACCGGGCCAATCCCCGGCTTACGCATTATGCCTCTTC-GGCTGGCTGAGCG
* * * *
32425871 CCCGCACTCCCGTTTCATGGGTTGGCTTAGG
128 CCCGCACGCTCGTTTCGTGGGTTGACTTAGG
** * * * * ** * *
32425902 CATATGGAGTTCATT-CCATGTCTAAGCCCTA-ACCGGATCGAGGGTTGTGGCAGTGGGACCGGC
1 CATATGGAGTTCATTCCCA-GTCTAAGATC-AGACCGGACCGAGAGTTGCGACAGCAGGATCGAC
* * * * *
32425965 AGCACGTAGAGGGGGACCGGGCCAATCTCCGGCTTACGTATTATGCCTCTTCGACTGGCTCAGTG
64 AGCACGTAG-GGGGGACCGGGCCAATCCCCGGCTTACGCATTATGCCTCTTCGGCTGGCTGAGCG
* *
32426030 CCCGCCCGCTCGTTTCGTGGGTTGACTTATG
128 CCCGCACGCTCGTTTCGTGGGTTGACTTAGG
* * *
32426061 CATACGGAGTTGATTCCCAGTCTAAGATCAGACTGGACCGAGAGTTGCGACAGCAGGATCGACAG
1 CATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGAGTTGCGACAGCAGGATCGACAG
*** * ** * * * * *
32426126 CACGTAGGGGGGACC-AATCGATCCCCTTCTTACGCATAATGCCACTCCGGCCGACTGAGCGCCC
66 CACGTAGGGGGGACCGGGCCAATCCCCGGCTTACGCATTATGCCTCTTCGGCTGGCTGAGCGCCC
*
32426190 GCATGCTCGTTTCGTGGGTT-AGCTTAGG
131 GCACGCTCGTTTCGTGGGTTGA-CTTAGG
* * * *
32426218 CATATGGAGTTCATTCCCAGTCTAAGATTAGACCGAACC-AAAGGTTGC-AGCAACAGGATCGAC
1 CATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGA-GTTGCGA-CAGCAGGATCGAC
** * ** * * * * * * **
32426281 AGCACACAGGAGGGG-CAGATCCGATCCCTGGCTTATGCATTTTGCCTC-CCTGACCAGCTGAGC
64 AGCACGTAGG-GGGGACCGGGCCAATCCCCGGCTTACGCATTATGCCTCTTC-GGCTGGCTGAGC
* * *
32426344 GCCCGCACGCTCGATTCGTGAGTTGGCTTAGG
127 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
* *
32426376 TATACGGAGTTCATT-CCATGTCTAAG
1 CATATGGAGTTCATTCCCA-GTCTAAG
32426402 CATACAGAGT
Statistics
Matches: 398, Mismatches: 86, Indels: 32
0.77 0.17 0.06
Matches are distributed among these distances:
156 4 0.01
157 126 0.32
158 142 0.36
159 121 0.30
160 5 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.24
Consensus pattern (158 bp):
CATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGAGTTGCGACAGCAGGATCGACAG
CACGTAGGGGGGACCGGGCCAATCCCCGGCTTACGCATTATGCCTCTTCGGCTGGCTGAGCGCCC
GCACGCTCGTTTCGTGGGTTGACTTAGG
Found at i:32426385 original size:158 final size:156
Alignment explanation
Indices: 32426029--32426401 Score: 400
Period size: 157 Copynumber: 2.4 Consensus size: 156
32426019 CTGGCTCAGT
* * * *
32426029 GCCCGCCCGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTGATTCCCAGTCTAAGATCAGAC
1 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* * * * ** *
32426094 TGGACCGAGAGTTGCGACAGCAGGATCGACAGCACGTAGGGGGGACCAATCGATCCCCTTCTTAC
66 CGAACCAAGAGTTGCGACAACAGGATCGACAGCACACAGGGGGGA-CAATCGATCCCCTGCTTAC
*
32426159 GCATAATGCCACTCCGGCCGACTGAGC
130 GCATAATGCCACTCCGACCGACTGAGC
* * * *
32426186 GCCCGCATGCTCGTTTCGTGGGTTAGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATTAGAC
1 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
32426251 CGAACCAA-AGGTTGC-AGCAACAGGATCGACAGCACACAGGAGGGG-CAGATCCGAT-CCCTGG
66 CGAACCAAGA-GTTGCGA-CAACAGGATCGACAGCACACAGG-GGGGACA-AT-CGATCCCCT-G
* ** *
32426312 CTTATGCATTTTGCCTC-CCTGACC-AGCTGAGC
125 CTTACGCATAATGCCACTCC-GACCGA-CTGAGC
* * *
32426344 GCCCGCACGCTCGATTCGTGAGTTGGCTTAGGTATACGGAGTTCATT-CCATGTCTAAG
1 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCA-GTCTAAG
32426402 CATACAGAGT
Statistics
Matches: 181, Mismatches: 26, Indels: 17
0.81 0.12 0.08
Matches are distributed among these distances:
156 4 0.02
157 99 0.55
158 78 0.43
ACGTcount: A:0.22, C:0.28, G:0.27, T:0.23
Consensus pattern (156 bp):
GCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
CGAACCAAGAGTTGCGACAACAGGATCGACAGCACACAGGGGGGACAATCGATCCCCTGCTTACG
CATAATGCCACTCCGACCGACTGAGC
Found at i:32426413 original size:26 final size:26
Alignment explanation
Indices: 32426377--32426427 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
32426367 TGGCTTAGGT
*
32426377 ATACGGAGTTCATT-CCATGTCTAAGC
1 ATACAGAGTTCATTCCCA-GTCTAAGC
32426403 ATACAGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
32426428 ATCAGATCAG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGC
Found at i:32426702 original size:159 final size:159
Alignment explanation
Indices: 32426495--32427102 Score: 589
Period size: 159 Copynumber: 3.9 Consensus size: 159
32426485 CTGATCTCGG
* * * * * * *
32426495 CTTGTGCATTCTACCTCTTCGGTCGGCTGAGCACCCGTACGCCTATTTCATGGGTTTGCTTAGGC
1 CTTGTGCATTATACCTCTTCGGCCGGCTCAGCGCCCGCACGCCCATTTCATGGGTTGGCTTAGGC
32426560 ATAGCGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCGGGACCGACAGC
66 ATAGCGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCGGGACCGACAGC
** * *
32426625 ACGCAGAGGGGGATCAAGCCGATCCCTGG
131 ACGCAGAGGGGGATCGGGCCGATCCCCGA
* * * * * * * * * *
32426654 CTTGTGCATTATGCCACTTCGGTCGGTTCAGTGCCCGTACACTCATTTCATGGGTTGACTTATGC
1 CTTGTGCATTATACCTCTTCGGCCGGCTCAGCGCCCGCACGCCCATTTCATGGGTTGGCTTAGGC
** * * ** * ** * *
32426719 ATA-CG-G--------A-GTCTAAG-ATCGGATCGGACCGAAGGTTACGACAGCAAGATCGACAA
66 ATAGCGAGTTCATTCCATGTCTAAGCCCCAG-TCGGACCGAGGGTTGTGGCAGCGGGACCGACAG
**
32426772 CACATAG-GGGGGATCGGGCCGATCCCCGA
130 CACGCAGAGGGGGATCGGGCCGATCCCCGA
* * * * **
32426801 CTTGTGCATTCTACCTCTTCGACCAGCTAAGCGCCCGCACGCCCATTTTGTGGGTTGGCTTAGGC
1 CTTGTGCATTATACCTCTTCGGCCGGCTCAGCGCCCGCACGCCCATTTCATGGGTTGGCTTAGGC
* * * *
32426866 ATAGGGAGTTCATTCCATGTCTAAGCCCTAGTCGGACCGAGGGTTGTGGCAGTGGGACCGGCAGC
66 ATAGCGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCGGGACCGACAGC
*
32426931 ACGCAGAGGGGGATCGGGCCGATCCCCAA
131 ACGCAGAGGGGGATCGGGCCGATCCCCGA
* * * *
32426960 CTTGTGCATTATCCCTCTCCGGCCGGCTCAGCGCCTGCACGCCCGTTTCATGGGTTGGCTTAGGC
1 CTTGTGCATTATACCTCTTCGGCCGGCTCAGCGCCCGCACGCCCATTTCATGGGTTGGCTTAGGC
* * * *
32427025 ATAGGGAGTTCATTCCAAGTCTAAGCCCTA-TCTGGACTGAGGGTTGTGGCAGCGGGACC-AGCA
66 ATAGCGAGTTCATTCCATGTCTAAGCCCCAGTC-GGACCGAGGGTTGTGGCAGCGGGACCGA-CA
* *
32427088 GCATGTAGAGGGGGA
129 GCACGCAGAGGGGGA
32427103 CTAGACTGGT
Statistics
Matches: 353, Mismatches: 80, Indels: 32
0.76 0.17 0.07
Matches are distributed among these distances:
147 72 0.20
148 38 0.11
149 2 0.01
157 2 0.01
158 39 0.11
159 200 0.57
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.23
Consensus pattern (159 bp):
CTTGTGCATTATACCTCTTCGGCCGGCTCAGCGCCCGCACGCCCATTTCATGGGTTGGCTTAGGC
ATAGCGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCGGGACCGACAGC
ACGCAGAGGGGGATCGGGCCGATCCCCGA
Found at i:32427136 original size:159 final size:159
Alignment explanation
Indices: 32426779--32427208 Score: 468
Period size: 159 Copynumber: 2.7 Consensus size: 159
32426769 CAACACATAG
* * * * ** * * * *
32426779 GGGGGATCGGGCCGATCCCCGACTTGTGCATTCTACCTCTTCGACCAGCTAAGCGCCCGCACGCC
1 GGGGGATCAGACCGATCCCCAACTTGCGCATAATCCCTCTCCGACCGGCTCAGCGCCCGCACGCC
* * *
32426844 CATTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGTCGGACCGAGGG
66 CGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCAAGTCTAAGCCCTAGTCGGACCGAGGG
* *
32426909 TTGTGGCAGTGGGACCGGCAGCACGCAGA
131 TTGTGGCAGCGGGACCAGCAGCACGCAGA
* * * * * *
32426938 GGGGGATCGGGCCGATCCCCAACTTGTGCATTATCCCTCTCCGGCCGGCTCAGCGCCTGCACGCC
1 GGGGGATCAGACCGATCCCCAACTTGCGCATAATCCCTCTCCGACCGGCTCAGCGCCCGCACGCC
* *
32427003 CGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCAAGTCTAAGCCCTA-TCTGGACTGAGG
66 CGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCAAGTCTAAGCCCTAGTC-GGACCGAGG
* *
32427067 GTTGTGGCAGCGGGACCAGCAGCATGTAGA
130 GTTGTGGCAGCGGGACCAGCAGCACGCAGA
* * * ** * * * * *
32427097 GGGGGA-CTAGACTGGTCCTCGGCTTGCGCATAATGCCTCTCTGACTGGTTTAGCGCCCGCACGC
1 GGGGGATC-AGACCGATCCCCAACTTGCGCATAATCCCTCTCCGACCGGCTCAGCGCCCGCACGC
** * * *
32427161 TTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
65 CCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCAAGTCTAAG
32427209 ATCAGACCAG
Statistics
Matches: 230, Mismatches: 39, Indels: 4
0.84 0.14 0.01
Matches are distributed among these distances:
158 3 0.01
159 227 0.99
ACGTcount: A:0.17, C:0.28, G:0.31, T:0.24
Consensus pattern (159 bp):
GGGGGATCAGACCGATCCCCAACTTGCGCATAATCCCTCTCCGACCGGCTCAGCGCCCGCACGCC
CGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCAAGTCTAAGCCCTAGTCGGACCGAGGG
TTGTGGCAGCGGGACCAGCAGCACGCAGA
Found at i:32427370 original size:26 final size:26
Alignment explanation
Indices: 32427340--32427392 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32427330 GTTGGCTTAG
*
32427340 GCATACATAGTTCATT-CCATGTCTAA
1 GCATACAAAGTTCATTCCCA-GTCTAA
32427366 GCATACAAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
32427392 G
1 G
32427393 ATTTTAAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.32, C:0.25, G:0.13, T:0.30
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAGTCTAA
Found at i:32428366 original size:22 final size:22
Alignment explanation
Indices: 32428338--32428380 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
32428328 GCCGATCCTT
*
32428338 GGCTTGCACATTTTGCCTCTCC
1 GGCTTGCACATTCTGCCTCTCC
32428360 GGCTTGCACATTCTGCCTCTC
1 GGCTTGCACATTCTGCCTCTC
32428381 TGATCGGTTG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.09, C:0.37, G:0.19, T:0.35
Consensus pattern (22 bp):
GGCTTGCACATTCTGCCTCTCC
Found at i:32428845 original size:26 final size:26
Alignment explanation
Indices: 32428793--32428845 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
32428783 GTTGACTTAG
*
32428793 GCATAAGGAGTTCATCCCCAATTTAA
1 GCATAAGGAGTTCATCCCCAATCTAA
* * *
32428819 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATCCCCAATCTAA
32428845 G
1 G
32428846 ATTAGATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATAAGGAGTTCATCCCCAATCTAA
Found at i:32429544 original size:26 final size:26
Alignment explanation
Indices: 32429514--32429566 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
32429504 GTTGACTTAG
32429514 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
32429540 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
32429566 G
1 G
32429567 ATTAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:32429879 original size:26 final size:26
Alignment explanation
Indices: 32429849--32429901 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32429839 GATGGCTTAG
*
32429849 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
32429875 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
32429901 G
1 G
32429902 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:32431056 original size:26 final size:26
Alignment explanation
Indices: 32431007--32431057 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
32430997 TTGGCTTAGG
*
32431007 CATACAGAGTTCATTCCTTATCTAAA
1 CATACAGAGTTCATTCCTCATCTAAA
*
32431033 CATATAGAGTTCATTCC-CAGTCTAA
1 CATACAGAGTTCATTCCTCA-TCTAA
32431058 GATCAAACCG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 1 0.05
26 21 0.95
ACGTcount: A:0.33, C:0.24, G:0.10, T:0.33
Consensus pattern (26 bp):
CATACAGAGTTCATTCCTCATCTAAA
Found at i:32431411 original size:26 final size:26
Alignment explanation
Indices: 32431375--32431427 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
32431365 GTTGACTTAG
32431375 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
32431401 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
32431427 G
1 G
32431428 ATTGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:32431869 original size:158 final size:157
Alignment explanation
Indices: 32431401--32431902 Score: 505
Period size: 158 Copynumber: 3.2 Consensus size: 157
32431391 CCCAGTCTAA
* *
32431401 GCATACGGAGTTCATTCCCA-GTCTAAGATTGGATCGGACCGAGGGTTGCGACAGTAGGATT-AG
1 GCATACGGAGTTCATT-CCATGTCTAAGATTAGATCGGACCGAGGGTTGCG-CAGCAGGATTGA-
* * * * * * * * *
32431464 TAGCACGCAAGGGGGACCGAGTCGATCTCAGGCTTG-GACATTCTTCCTCTCCGACTGGTTGAGT
63 CAGCATGCAGGGGGGACCGAGCCTATCCCTGGCTTGTG-CATTCTGCCTCTCCGACTGGTTGAGC
* * *
32431528 GCCCGCAC-ATCCGTTTCATGGGTTAGCTTAG
127 GCCCGCACGCT-CGTTTCGTGGGTTGGCTTAG
* *** * * * **
32431559 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCT-GGACTGAGGGTTGTCGCCGCAGGACCGAC
1 GCATACGGAGTTCATTCCATGTCTAAG-ATTAGATCGGACCGAGGGTTG-CGCAGCAGGATTGAC
** * * * * * * *
32431623 AGCATGCAGAGGGGGAGTG-GGCTGATCCCTGACTTGTGCATTATGCCTCTTCGACTAGCTCAGC
64 AGCATGCAG-GGGGGACCGAGCCT-ATCCCTGGCTTGTGCATTCTGCCTCTCCGACTGGTTGAGC
*
32431687 GCCCGCACGCTCATTTCGTGGGTTGGCTTAG
127 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* *
32431718 GCATACGGAGTTCATTCCCTGTCTAAGATTAGATCGGACCGAGGGTTGCAGCAGCAAGATTGACA
1 GCATACGGAGTTCATTCCATGTCTAAGATTAGATCGGACCGAGGGTTGC-GCAGCAGGATTGACA
*
32431783 GCATGTAGGGGGGACCGAGCCTATCCCTGGCTTGTGCATTCTGCCTCTCCGA-TCGGTTGAGCGC
65 GCATGCAGGGGGGACCGAGCCTATCCCTGGCTTGTGCATTCTGCCTCTCCGACT-GGTTGAGCGC
* *
32431847 CCACACGCTCGTTTGGTGGGTTGGCTTAG
129 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
*
32431876 GCATATGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
32431903 CATACAGAGT
Statistics
Matches: 274, Mismatches: 58, Indels: 24
0.77 0.16 0.07
Matches are distributed among these distances:
157 4 0.01
158 145 0.53
159 123 0.45
160 2 0.01
ACGTcount: A:0.19, C:0.25, G:0.30, T:0.25
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATTAGATCGGACCGAGGGTTGCGCAGCAGGATTGACAG
CATGCAGGGGGGACCGAGCCTATCCCTGGCTTGTGCATTCTGCCTCTCCGACTGGTTGAGCGCCC
GCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:32433107 original size:26 final size:26
Alignment explanation
Indices: 32433077--32433129 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
32433067 GTTGGCTTAT
32433077 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
32433103 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
32433129 G
1 G
32433130 ATCAGATCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:32433470 original size:171 final size:170
Alignment explanation
Indices: 32433105--32433472 Score: 379
Period size: 171 Copynumber: 2.2 Consensus size: 170
32433095 ATGTCTAAGC
*
32433105 ATACGGAGTTCATTCCCAGTCTAAG-ATCAGATCAGACGGAGGGTTACGGTAGCAGGACCAGCAA
1 ATACGGAGTTCA-TCCCAGTCTAAGCACCAGATCAGACGGAGGGTTACGGTAGCAGGACCAGCAA
* * * **
32433169 TAGGACCAGTAGCACACAGAGGGGACTGGGTCGATCCCCGACTTACGCATTCTGCCTCTCTGGTC
65 CAGGACCAGTAGCACACAGAGGGGACCGGGTCGATCCCCGACTTACGCATTATGCCTCTCTGACC
* * * * *
32433234 GGCTGAGCGCCCGCACACTCATTTCGTGGGTTGGCTTAGGC
130 AGATGAGCGCCCGCACACTCATTTAGTGGGTTGACTTAGGA
** * * * ** *
32433275 ATACGGAGTTCATTTCATGTCTAAGCCCCAGA-CGGACTGAGGGTTGTGGTAGCAGGACC-GATA
1 ATACGGAGTTCATCCCA-GTCTAAGCACCAGATCAGACGGAGGGTTACGGTAGCAGGACCAG-CA
* ** *
32433338 ACAGGATC-GATAGCATGCAGAGGGGGACCGGG-CTGATCCCCGGCTTACGCATTATGCCTCTCT
64 ACAGGACCAG-TAGCACACAGA-GGGGACCGGGTC-GATCCCCGACTTACGCATTATGCCTCTCT
* ** *
32433401 GACCAGATGAGTGCCCGCATGCTTATTTTAG-GGGTTGACTTAGGA
126 GACCAGATGAGCGCCCGCACACTCA-TTTAGTGGGTTGACTTAGGA
32433446 ATACGGAGTTCATCCCCAGTCTAAGCA
1 ATACGGAGTTCAT-CCCAGTCTAAGCA
32433473 TACGAAGTTC
Statistics
Matches: 160, Mismatches: 30, Indels: 15
0.78 0.15 0.07
Matches are distributed among these distances:
169 5 0.03
170 59 0.37
171 90 0.56
172 6 0.04
ACGTcount: A:0.23, C:0.25, G:0.29, T:0.23
Consensus pattern (170 bp):
ATACGGAGTTCATCCCAGTCTAAGCACCAGATCAGACGGAGGGTTACGGTAGCAGGACCAGCAAC
AGGACCAGTAGCACACAGAGGGGACCGGGTCGATCCCCGACTTACGCATTATGCCTCTCTGACCA
GATGAGCGCCCGCACACTCATTTAGTGGGTTGACTTAGGA
Found at i:32433482 original size:26 final size:26
Alignment explanation
Indices: 32433446--32433496 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
32433436 TGACTTAGGA
* *
32433446 ATACGGAGTTCATCCCCAGTCTAAGC
1 ATACGAAGTTCATCCCCAATCTAAGC
*
32433472 ATACGAAGTTCATTCCCAATCTAAG
1 ATACGAAGTTCATCCCCAATCTAAG
32433497 ATCACACCGG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.25
Consensus pattern (26 bp):
ATACGAAGTTCATCCCCAATCTAAGC
Found at i:32433976 original size:26 final size:26
Alignment explanation
Indices: 32433940--32433992 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32433930 GTTGGCTTAG
*
32433940 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACCGAGTTCATTCCCA-GTCTAA
32433966 GCATACCGAGTTCATTCCCAGTCTAA
1 GCATACCGAGTTCATTCCCAGTCTAA
32433992 G
1 G
32433993 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACCGAGTTCATTCCCAGTCTAA
Found at i:32435046 original size:158 final size:157
Alignment explanation
Indices: 32434719--32435048 Score: 335
Period size: 158 Copynumber: 2.1 Consensus size: 157
32434709 GACCAACAGC
* * * ** * * *
32434719 AGGATCGACAGCACGCAGGGGGGATCGGGCTGATCCCTAGCTTCCGTATTCTGCCTCTCTGGCCA
1 AGGATTGACAGCACGCAGAGGGGATCGAGCCAATCCCTAGCTTCCGCATTATGCCTCTCAGGCCA
* * * * * *
32434784 ATTGAGCGCCCGTACGTCCATTTCATGGGTTGGCTTAGGCATAGGGATTTCATTCCATGTCAAGC
66 ACTCAGCGCCCGTACGTCCATTTCATGGGTTGACTTAGGCATAGCGAGTTCATTCCATGTCAAGA
* * * *
32434849 CCTAGCCGGACCGAGGGTTGTGGCAGT
131 CCTAGCCAGACCGAGGGATGTAGCAGA
* * * * *
32434876 GGGACTGGCAGCATGCAGAAGGGGATCGAGCCAATCCCTAGCTTGCGCATTATGCCTCTCAGGCC
1 AGGATTGACAGCACGCAG-AGGGGATCGAGCCAATCCCTAGCTTCCGCATTATGCCTCTCAGGCC
* *
32434941 AGCTCAGCGCCCGTACG-CTCGTTTCATGGGTTGACTTAGGCATA-CGAGTTCATTCCCA-GTCT
65 AACTCAGCGCCCGTACGTC-CATTTCATGGGTTGACTTAGGCATAGCGAGTTCATT-CCATGTC-
* * *
32435003 AAGATC-AGACCAGATCGAGGGATGTAGTAGA
127 AAGACCTAG-CCAGACCGAGGGATGTAGCAGA
32435034 AGGATTGACAGCACG
1 AGGATTGACAGCACG
32435049 TAGGGGGTCT
Statistics
Matches: 136, Mismatches: 32, Indels: 9
0.77 0.18 0.05
Matches are distributed among these distances:
157 27 0.20
158 109 0.80
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.23
Consensus pattern (157 bp):
AGGATTGACAGCACGCAGAGGGGATCGAGCCAATCCCTAGCTTCCGCATTATGCCTCTCAGGCCA
ACTCAGCGCCCGTACGTCCATTTCATGGGTTGACTTAGGCATAGCGAGTTCATTCCATGTCAAGA
CCTAGCCAGACCGAGGGATGTAGCAGA
Found at i:32435495 original size:217 final size:216
Alignment explanation
Indices: 32435121--32435549 Score: 599
Period size: 217 Copynumber: 2.0 Consensus size: 216
32435111 CTTAGGCATA
* *** ** *
32435121 GGGAGTTCATTCCGTGTCTAAGCCCTAGCCAGATTGAGGGTTGTGGCAGTCGGATCGACAGCATG
1 GGGAGTTCATTCCATGTCTAAGCCCTAGCCAGACCAAGGGTTGTGGCAGTAAGACCGACAGCATG
* * * * * *
32435186 CAGTGGGACTGGTCCGATCCTTAGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGTGCCGTTACA
66 CAGGGGGACCGATCCGATCCCTAGCTTGCGCATTCTGCCTCTCCGATCGGCTAAGTGCCGTTACA
* * *
32435251 CCCGTTTCGTGGGTTGGCTTAGGCATAGGAAGTTCGTTCCATGTCTAAGCCCTAGCCGGATCGAG
131 CCCATTTCGTGGGTTGGCTTAGGCATAGGAAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAG
32435316 GGTTGTGGCAGTGGGACTGGC
196 GGTTGTGGCAGTGGGACTGGC
* * *
32435337 GGGAGTTCATTCCATGTCTAAG-CCTCAGTCGGACCAAGGGTTGTGGTAGTAAGACCGACAGCAT
1 GGGAGTTCATTCCATGTCTAAGCCCT-AGCCAGACCAAGGGTTGTGGCAGTAAGACCGACAGCAT
* * *
32435401 GTAGGGGAGACCGATCCGATCCCTGGCTTGTGCATTCTGCCTCTCCGATCGGCTAAGTGCCGTTA
65 GCAGGGG-GACCGATCCGATCCCTAGCTTGCGCATTCTGCCTCTCCGATCGGCTAAGTGCCGTTA
* * *
32435466 CACTCATTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCG
129 CACCCATTTCGTGGGTTGGCTTAGGCATAGGAAGTTCATTCCATGTCTAAGCCCCAGCCGGATCG
*
32435531 AGGGTTGTGGCATTGGGAC
194 AGGGTTGTGGCAGTGGGAC
32435550 CGATAGCACG
Statistics
Matches: 185, Mismatches: 26, Indels: 3
0.86 0.12 0.01
Matches are distributed among these distances:
215 3 0.02
216 55 0.30
217 127 0.69
ACGTcount: A:0.17, C:0.24, G:0.32, T:0.26
Consensus pattern (216 bp):
GGGAGTTCATTCCATGTCTAAGCCCTAGCCAGACCAAGGGTTGTGGCAGTAAGACCGACAGCATG
CAGGGGGACCGATCCGATCCCTAGCTTGCGCATTCTGCCTCTCCGATCGGCTAAGTGCCGTTACA
CCCATTTCGTGGGTTGGCTTAGGCATAGGAAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAG
GGTTGTGGCAGTGGGACTGGC
Done.