Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 354 of 402
Found at i:32435629 original size:159 final size:158
Alignment explanation
Indices: 32435337--32435831 Score: 385
Period size: 158 Copynumber: 3.1 Consensus size: 158
32435327 TGGGACTGGC
* * * *
32435337 GGGAGTTCATTCCATGTCTAAGCCTCAGTCGGACCAAGGGTTGTGGTAGTAAGACCGACAGCATG
1 GGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCAAGGGTTGTGGCAGTAAGACCGACAGCACG
* * * * ** *
32435402 TAGGGGAGACCGATCCGATCCCTGGCTTGTGCATTCTGCCTCTCCGATCGGCTAAGTGCCGTTAC
66 TAGGGGAGACCGAGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGATCGGCTAAGCACCGTCAC
** *
32435467 ACTCATTTTGTGGGTTGGCTTAGGCATA
131 ACTCATTCCGTGGGTTGACTTAGGCATA
* * * ** *
32435495 GGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAGGGTTGTGGCATTGGGACCGATAGCACG
1 GGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCAAGGGTTGTGGCAGTAAGACCGACAGCACG
* * * * *
32435560 TAGAGGGTGACCGAGCCGATCCCCGGCTTGCGTATTATGCCTTTTCGATCGGCTCAGCACC-TAC
66 TAG-GGGAGACCGAGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGATCGGCTAAGCACCGT-C
* *
32435624 ACACTCGTTCCGTGGGTTGACTTATGCATA
129 ACACTCATTCCGTGGGTTGACTTAGGCATA
* * *** * * * ** * * * *
32435654 TGGTGTTCATTCCCA-GTCT-AG-ATGAGATCGGATCGAGGGTTACGACAGCAGGATCGACAGCA
1 GGGAGTTCATT-CCATGTCTAAGCCCCAG-CCGGACCAAGGGTTGTGGCAGTAAGACCGACAGCA
* ** * * * * *
32435716 CGTCAGGGG-GACCGGGTTGATCCCCGGCTTACGCATTCTGCCTCTCCGA-CCGTTGAGCACCCG
64 CGT-AGGGGAGACCGAGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGATCGGCTAAGCA-CCG
* * * *
32435779 -CACACTCGTTTCATGGGTTGGCTTAGGCATA
127 TCACACTCATTCCGTGGGTTGACTTAGGCATA
*
32435810 CGGAGTTCATTCCCA-GTCTAAG
1 GGGAGTTCATT-CCATGTCTAAG
32435832 ATTTTGAGCC
Statistics
Matches: 271, Mismatches: 58, Indels: 17
0.78 0.17 0.05
Matches are distributed among these distances:
156 51 0.19
157 38 0.14
158 93 0.34
159 86 0.32
160 3 0.01
ACGTcount: A:0.19, C:0.26, G:0.29, T:0.25
Consensus pattern (158 bp):
GGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCAAGGGTTGTGGCAGTAAGACCGACAGCACG
TAGGGGAGACCGAGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGATCGGCTAAGCACCGTCAC
ACTCATTCCGTGGGTTGACTTAGGCATA
Found at i:32436500 original size:26 final size:26
Alignment explanation
Indices: 32436471--32436523 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
32436461 GTTGACTTAG
* *
32436471 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCAAGTCTAA
* *
32436497 GCATATGAAGTTCATTCCAAGTCTAA
1 GCATACGAAGTTCATCCCAAGTCTAA
32436523 G
1 G
32436524 ATCGGACAAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCAAGTCTAA
Found at i:32439014 original size:26 final size:26
Alignment explanation
Indices: 32438978--32439030 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
32438968 GTTGGCTTAG
32438978 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
32439004 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
32439030 G
1 G
32439031 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:32439731 original size:26 final size:26
Alignment explanation
Indices: 32439701--32439753 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
32439691 GTTGACTTAG
32439701 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
32439727 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
32439753 G
1 G
32439754 ATTGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:32440099 original size:26 final size:26
Alignment explanation
Indices: 32440069--32440121 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
32440059 GTTGGCTTAG
32440069 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
32440095 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
32440121 G
1 G
32440122 ATCGAACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:32440372 original size:22 final size:22
Alignment explanation
Indices: 32440342--32440393 Score: 68
Period size: 22 Copynumber: 2.4 Consensus size: 22
32440332 ATCGGGCCAA
* *
32440342 TCTCTGGCTTGCGCATTATGCC
1 TCTCCGGCTTCCGCATTATGCC
* *
32440364 TCTTCGGCTTCCGCATTCTGCC
1 TCTCCGGCTTCCGCATTATGCC
32440386 TCTCCGGC
1 TCTCCGGC
32440394 CGACTGAACG
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.06, C:0.38, G:0.21, T:0.35
Consensus pattern (22 bp):
TCTCCGGCTTCCGCATTATGCC
Found at i:32440654 original size:26 final size:26
Alignment explanation
Indices: 32440617--32440669 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32440607 GTTGACTTAG
*
32440617 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
32440643 GCATAC-AGAGTTCATTCCCAGTCTAA
1 GCATACGA-AGTTCATTCCCAGTCTAA
32440669 G
1 G
32440670 ATCAGACCGT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:32440909 original size:548 final size:548
Alignment explanation
Indices: 32439867--32440914 Score: 1347
Period size: 548 Copynumber: 1.9 Consensus size: 548
32439857 CGCATGCTCA
* * *
32439867 TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGACTAAGCCCAAACCGGACTGAGGGTT
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGACTAAGCCCAAACCGAACCGAGGGTT
* * *
32439932 GTGGCAGCAGGACCGACAGCGAGATCGGTAGCATGCAAAGGGAGATCGGGCTGATCCCTGGCTTG
66 GTGGCAGCAGGACCGACAGCGAGATCAGTAGCACGCAAAGGGAGATCGGGCTGATCCCCGGCTTG
* * * * ** * * *
32439997 CGCAATATGCCTCTCTGACCAGCCTCTTCGATCGGTTGAGCGCTCGCACGCTCATTTCATGGGTT
131 CACAATATGCCTCTCCGACCAGCCTCTCCAATCGACTGAACGCCCACACGCTCATTTCATGGGTT
* * *
32440062 GGCTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGA
196 GACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGA
* * * * * * *
32440127 ACCAGACTGAGGGTTGCGGTATCAGGATCGACAGCACACAGATGAGACCGGGCCGATCCCTGGCT
261 ACCAGACCGAGGGTTACGGCATCAGGATCAACAGCACACAGAGGAGACCGGGCCGATCCCTAGCA
* ** * * *
32440192 TGCGCATTCTGCCTCTCCGGTCGACTGAGCTCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCAT
326 AGCGCATTCTGCCTCTCCGACCGACTGAGCGCCCGCACGCCCATTTCGCGGGTTGGCTTAGGCAT
* * *
32440257 AGGGAGTTCATTCCATGTATAAACCCCAATCGGACCGAGGGTTGTGGTAGCGGGACCAACAGCAT
391 AGGGAGTTCATTCCATGTATAAACCCCAATCGGACCGAGGGTTATGGGAGCGGGACCAACAGCAC
* * * *
32440322 GCAGAGGGGGATCGGGCCAATCTCTGGCTTGCGCATTATGCCTCTTCGGCTTCCGCATTCTGCCT
456 ACAGAGGGGGACCGAGCCAATCTCTGGCTTGCACATTATGCCTCTTCGGCTTCCGCATTCTGCCT
32440387 CTCCGGCCGACTGAACGCCCGACACTCG
521 CTCCGGCCGACTGAACGCCCGACACTCG
* * * *
32440415 TTTCGTGGGTTGGCTTAGGGATACGGAGTTCATTCCATGTCTAAGCCCCAGA-CGAACCGAGTGT
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGACTAAG-CCCAAACCGAACCGAGGGT
* * * * *
32440479 TGTGGTAGTAGGATCGATAGCGGGATCAGTAGCACGCAAAGAGG-GA-CTGGGCTGATCCCCGGC
65 TGTGGCAGCAGGACCGACAGCGAGATCAGTAGCACGCAAAG-GGAGATC-GGGCTGATCCCCGGC
* * * *
32440542 TTGCACATTATGCCTCTCCGGCCAGCCTCTCCAATCGACTGAACGCCCACACGCTCGTTTCGTGG
128 TTGCACAATATGCCTCTCCGACCAGCCTCTCCAATCGACTGAACGCCCACACGCTCATTTCATGG
* *
32440607 GTTGACTTAGGCATACGAAGTTCATTCCTAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGAT
193 GTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGAT
** *
32440672 C-AGACC-GTACCGAGGGTTACGGCAGT-AGGATCAACAGCATGCAGAGGGGACCGGGCCGAT-C
258 CGA-ACCAG-ACCGAGGGTTACGGCA-TCAGGATCAACAGCACACAGAGGAGACCGGGCCGATCC
* * *
32440733 CTCAGCAAGTGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCCCATTTTGCGGGTTGGCT
320 CT-AGCAAGCGCATTCTGCCTCTCCGACCGACTGAGCGCCCGCACGCCCATTTCGCGGGTTGGCT
* * ** * * *
32440798 TAGGCATAGGGTGTTCATTCCATGTCTATGCCCCAGTCGGACCGAGGGTTATGGGAGCGGGATCG
384 TAGGCATAGGGAGTTCATTCCATGTATAAACCCCAATCGGACCGAGGGTTATGGGAGCGGGACCA
***
32440863 ACAGCACACAGAGGGGGACCGAGTTGATC-CTCGGCTTGCACATTATGCCTCT
449 ACAGCACACAGAGGGGGACCGAGCCAATCTCT-GGCTTGCACATTATGCCTCT
32440915 CCGGTCGGCT
Statistics
Matches: 423, Mismatches: 69, Indels: 16
0.83 0.14 0.03
Matches are distributed among these distances:
547 8 0.02
548 407 0.96
549 8 0.02
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.23
Consensus pattern (548 bp):
TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGACTAAGCCCAAACCGAACCGAGGGTT
GTGGCAGCAGGACCGACAGCGAGATCAGTAGCACGCAAAGGGAGATCGGGCTGATCCCCGGCTTG
CACAATATGCCTCTCCGACCAGCCTCTCCAATCGACTGAACGCCCACACGCTCATTTCATGGGTT
GACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGA
ACCAGACCGAGGGTTACGGCATCAGGATCAACAGCACACAGAGGAGACCGGGCCGATCCCTAGCA
AGCGCATTCTGCCTCTCCGACCGACTGAGCGCCCGCACGCCCATTTCGCGGGTTGGCTTAGGCAT
AGGGAGTTCATTCCATGTATAAACCCCAATCGGACCGAGGGTTATGGGAGCGGGACCAACAGCAC
ACAGAGGGGGACCGAGCCAATCTCTGGCTTGCACATTATGCCTCTTCGGCTTCCGCATTCTGCCT
CTCCGGCCGACTGAACGCCCGACACTCG
Found at i:32441147 original size:26 final size:26
Alignment explanation
Indices: 32441117--32441169 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32441107 GTTGGCTTAG
*
32441117 GCATAGGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
32441143 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
32441169 G
1 G
32441170 ATCGGATCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:32442739 original size:26 final size:26
Alignment explanation
Indices: 32442710--32442762 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
32442700 GTTGACTTTG
*
32442710 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCACCAGTCTAA
*
32442736 GCATACGGAGTTCATTACCAGTCTAA
1 GCATACGGAGTTCATCACCAGTCTAA
32442762 G
1 G
32442763 AGTGGACCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCACCAGTCTAA
Found at i:32444795 original size:26 final size:26
Alignment explanation
Indices: 32444745--32444797 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
32444735 GTTGACTTAG
* *
32444745 GCATGCGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAATCTAA
32444771 GCATACGGAGTTCATTCCC-AATCTAA
1 GCATACGGAGTTCA-TCCCTAATCTAA
32444797 G
1 G
32444798 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAATCTAA
Found at i:32445276 original size:26 final size:26
Alignment explanation
Indices: 32445246--32445298 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32445236 GTTGGCTTAG
*
32445246 GCATACGGAGTTTATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
32445272 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
32445298 G
1 G
32445299 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:32446462 original size:26 final size:26
Alignment explanation
Indices: 32446426--32446478 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
32446416 GTTGGCTTAG
32446426 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
32446452 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
32446478 G
1 G
32446479 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:32447223 original size:159 final size:158
Alignment explanation
Indices: 32446922--32447407 Score: 405
Period size: 159 Copynumber: 3.1 Consensus size: 158
32446912 AAGTATATGA
* * * ** *
32446922 AGTTCATTCCCAGTCTAAGA-TCAGACCGGA-TCGAGGGTTGC-GACAGCAGGATCGGTAGCACG
1 AGTTCATTCCCAGTCTAAGACCCA-ACTGGACT-GAGGGTGGCAG-CAGCAGGATCGACAGCACA
* * * * * *
32446984 TA-AGGGGGACCGGGTCAATCCCCGACTTGCATATTCTGCCTC-TCCAGTCGGCTGAGTGCCCGC
63 CAGATGGGGACCGGGTCGATCCCCGACTTGC-TATTCTGCCTCTTCAACT-GGCTGAGCGCCCGC
* * ** *
32447047 ATGCCCGTTTTGTGGGTTGGCTTAGGCATAGGG
126 ACGCTCGTTTCATGGGTTGGCTTAGGCATACGG
* * * * * * *
32447080 AGTTCATTCCCTGTTTAA-CCCACAACTGGACTGAGGGTTGCGGCAGCGGGA-CTGGCAGCACAC
1 AGTTCATTCCCAGTCTAAGACC-CAACTGGACTGAGGGTGGCAGCAGCAGGATC-GACAGCACAC
* * * *
32447143 AGA-GCGTGATCGGG-CAGATCCCCGACTTGCTCATTATGCCTCTTCAACTGGCTCAGCGCCCGC
64 AGATG-GGGACCGGGTC-GATCCCCGACTTGCT-ATTCTGCCTCTTCAACTGGCTGAGCGCCCGC
* * **
32447206 ACGCTCGTTTCATGGGTTGACTTAAGTGTACGG
126 ACGCTCGTTTCATGGGTTGGCTTAGGCATACGG
* * * * **
32447239 AGTTCATTCCCAGTCTAAGATCCGATTGGACTGAGGGTGGCAGTAGCAGGATCGACAGCAGTCAG
1 AGTTCATTCCCAGTCTAAGACCCAACTGGACTGAGGGTGGCAGCAGCAGGATCGACAGCACACAG
* * * * * * *
32447304 ATGGGGACCGGGTCGATCCCCGACTTGTGTATTCTGTCTCTCCGACCGGCTGAGCACCCACACGC
66 ATGGGGACCGGGTCGATCCCCGACTTG-CTATTCTGCCTCTTCAACTGGCTGAGCGCCCGCACGC
32447369 TCGTTTCATGGGTTGGCTTAGGCATACGG
130 TCGTTTCATGGGTTGGCTTAGGCATACGG
32447398 AGTTCATTCC
1 AGTTCATTCC
32447408 ATGCCTAAGA
Statistics
Matches: 259, Mismatches: 54, Indels: 29
0.76 0.16 0.08
Matches are distributed among these distances:
157 1 0.00
158 48 0.19
159 201 0.78
160 9 0.03
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.24
Consensus pattern (158 bp):
AGTTCATTCCCAGTCTAAGACCCAACTGGACTGAGGGTGGCAGCAGCAGGATCGACAGCACACAG
ATGGGGACCGGGTCGATCCCCGACTTGCTATTCTGCCTCTTCAACTGGCTGAGCGCCCGCACGCT
CGTTTCATGGGTTGGCTTAGGCATACGG
Found at i:32448411 original size:26 final size:26
Alignment explanation
Indices: 32448375--32448427 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
32448365 GTTGACTTAG
32448375 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* * *
32448401 GCATGCAGAGTTGATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
32448427 G
1 G
32448428 ATCGGATCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:32448703 original size:159 final size:157
Alignment explanation
Indices: 32448465--32448904 Score: 465
Period size: 159 Copynumber: 2.8 Consensus size: 157
32448455 CAGGATCGAT
* *
32448465 AGCACGCAGGGGGGACCAGGTCGATCCCCAGCTTACGCATTCTGCCTCTTCGGCCGGCTGAGCGC
1 AGCACGCAGGGGGGA-CAGGTCGATCCCCAGCTTGCGCATTCTGCCTCTTC-GACGGCTGAGCGC
* * * * *
32448530 CTGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CT
64 CCGTACGCACGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACT
** **
32448594 AGACCGAGGGTTATGGTAGCGGGACCGAC
129 AGACCGAGGGTTACAGTAGCAAGACCGAC
* * ** * * * *
32448623 AGCACGCAGAGGGCGATCGGGTCGATCCCTGGCTTGCACATTATGCCTTTTCGATCGGCTCAGCG
1 AGCACGCAG-GGGGGA-CAGGTCGATCCCCAGCTTGCGCATTCTGCCTCTTCGA-CGGCTGAGCG
* * *
32448688 CCCGTACGCACGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGA
63 CCCGTACGCACGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGA
* * *
32448751 CTGGACCGAGGGTTGCAGTAGCAAGATCGAC
127 CTAGACCGAGGGTTACAGTAGCAAGACCGAC
* * * * * *
32448782 AGAACACAGGGGGGACTAGGTCGATCCCCAGCTTGCGCATTCTGCCGCTCCGACTAGCTGAGCAC
1 AGCACGCAGGGGGGAC-AGGTCGATCCCCAGCTTGCGCATTCTGCCTCTTCGAC-GGCTGAGCGC
* * *
32448847 CC-TAACGCTCGTTTCATGGGTTTGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
64 CCGT-ACGCACGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
32448905 TACGGAGTTC
Statistics
Matches: 228, Mismatches: 45, Indels: 17
0.79 0.16 0.06
Matches are distributed among these distances:
157 6 0.03
158 98 0.43
159 121 0.53
160 3 0.01
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (157 bp):
AGCACGCAGGGGGGACAGGTCGATCCCCAGCTTGCGCATTCTGCCTCTTCGACGGCTGAGCGCCC
GTACGCACGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACTAG
ACCGAGGGTTACAGTAGCAAGACCGAC
Found at i:32448888 original size:158 final size:155
Alignment explanation
Indices: 32448408--32448902 Score: 448
Period size: 158 Copynumber: 3.1 Consensus size: 155
32448398 TAAGCATGCA
* * * * * *
32448408 GAGTTGATTCCCA-GTCTAAGATCGGA-TCGAACCAAGGGTTGCGACAGCAGGATCGATAGCACG
1 GAGTTCATT-CCATGTCTAAGATCAGACT-GGACCGAGGGTTGCG-TAGCAGGATCGACAGCACG
* * * * *
32448471 CAGGGGGGACCAGGTCGATCCCCAGCTTACGCATTCTGCCTCTTCGGCCGGCTGAGCGCCTGCAC
63 CAGGGGGGACTAGGTCGATCCCCAGCTTGCGCATTCTGCCTCTTCGACTGGCTGAGCCCCT--AC
* * *
32448536 GCCCGTTTCGTGGGTTGGCTTAGGCATAGG
126 GCACGTTTCGTGGGTTTGCTTAGGCATACG
** * * *
32448566 GAGTTCATTCCATGTCTAAGCCCCAG-CTAGACCGAGGGTTATG-GTAGCGGGACCGACAGCACG
1 GAGTTCATTCCATGTCTAAG-ATCAGACTGGACCGAGGG-T-TGCGTAGCAGGATCGACAGCACG
* * ** * * * *
32448629 CAGAGGGCGA-TCGGGTCGATCCCTGGCTTGCACATTATGCCTTTTCGA-TCGGCTCAGCGCCCG
63 CAG-GGGGGACT-AGGTCGATCCCCAGCTTGCGCATTCTGCCTCTTCGACT-GGCTGAGC-CCC-
*
32448692 TACGCACGTTTCGTGGG-TTGACTTATGCATACG
123 TACGCACGTTTCGTGGGTTTG-CTTAGGCATACG
* * *
32448725 GAGTTCATTCCCA-GTCTAAGATCAGACTGGACCGAGGGTTGCAGTAGCAAGATCGACAGAACAC
1 GAGTTCATT-CCATGTCTAAGATCAGACTGGACCGAGGGTTGC-GTAGCAGGATCGACAGCACGC
* * *
32448789 AGGGGGGACTAGGTCGATCCCCAGCTTGCGCATTCTGCCGCTCCGACTAGCTGAGCACCCTAACG
64 AGGGGGGACTAGGTCGATCCCCAGCTTGCGCATTCTGCCTCTTCGACTGGCTGAGC-CCCT-ACG
* *
32448854 CTCGTTTCATGGGTTTGCTTAGGCATACG
127 CACGTTTCGTGGGTTTGCTTAGGCATACG
32448883 GAGTTCATTCCATGTCTAAG
1 GAGTTCATTCCATGTCTAAG
32448903 CATACGGAGT
Statistics
Matches: 266, Mismatches: 51, Indels: 40
0.75 0.14 0.11
Matches are distributed among these distances:
157 9 0.03
158 129 0.48
159 120 0.45
160 7 0.03
161 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (155 bp):
GAGTTCATTCCATGTCTAAGATCAGACTGGACCGAGGGTTGCGTAGCAGGATCGACAGCACGCAG
GGGGGACTAGGTCGATCCCCAGCTTGCGCATTCTGCCTCTTCGACTGGCTGAGCCCCTACGCACG
TTTCGTGGGTTTGCTTAGGCATACG
Found at i:32449628 original size:26 final size:26
Alignment explanation
Indices: 32449598--32449650 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
32449588 GTTGACTTAG
**
32449598 GCATACGGTGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
32449624 GCATACGAAGTTCATTCCCAGTTTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
32449650 G
1 G
32449651 ATCAGACCGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:32450393 original size:26 final size:26
Alignment explanation
Indices: 32450356--32450408 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32450346 GTTGACATAG
*
32450356 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGAAGTTCATTCCC-AGTCTAA
32450382 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
32450408 G
1 G
32450409 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:32451590 original size:26 final size:26
Alignment explanation
Indices: 32451554--32451606 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
32451544 TTTGCCTTAG
32451554 GCATACAGAGTTCATCCCCACTCTAA
1 GCATACAGAGTTCATCCCCACTCTAA
* * *
32451580 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCACTCTAA
32451606 G
1 G
32451607 ATCGAACTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.30, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCACTCTAA
Found at i:32452090 original size:26 final size:26
Alignment explanation
Indices: 32452054--32452106 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32452044 GTTGGCTTAG
32452054 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
32452080 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
32452106 G
1 G
32452107 ATCAAATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:32452332 original size:26 final size:26
Alignment explanation
Indices: 32452284--32452333 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
32452274 TAAGCCCCAG
* *
32452284 CCGGACCGAGGGTTGTGGCAGCAGGA
1 CCGGACCGAGGGATGCGGCAGCAGGA
*
32452310 CCGGACCGAGGGATGCGGTAGCAG
1 CCGGACCGAGGGATGCGGCAGCAG
32452334 AATCGACAGC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.20, C:0.24, G:0.46, T:0.10
Consensus pattern (26 bp):
CCGGACCGAGGGATGCGGCAGCAGGA
Found at i:32452958 original size:183 final size:185
Alignment explanation
Indices: 32452596--32452958 Score: 498
Period size: 185 Copynumber: 2.0 Consensus size: 185
32452586 TTAGGCATGC
* *
32452596 AGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGC
1 AGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACAC
* * * * *
32452661 AGGGGGGGACCGGGTCGATCCCCGGCTTGTGCATTCTACCTCTTCGATGGGCTAAGCACCCGCAC
66 AGGAGGGGACCGGGCCGATCCCCGACTTGCGCATTCTACCTCTCCGATGGGCTAAGCACCCGCAC
*
32452726 GCTTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGAATAT
131 GCTTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGAATAT
* * * * * *
32452781 AGAGTTCATTCCTAGTCTAAGATCAGATCAGATCGAGGGTTGCGGTAGCAGGATCGGCAGCACAT
1 AGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACAC
* * * * * * *
32452846 A-GAGGGGACCGGGCCGATCTCTGACTTGCGCATTCTGCCTCTCCAGCT-GGCTGAGC-GCCGTA
66 AGGAGGGGACCGGGCCGATCCCCGACTTGCGCATTCTACCTCTCC-GATGGGCTAAGCACCCGCA
*
32452908 CGCTTGTTTCGTTGGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAG
130 CGCTTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAG
32452959 CCCCAGCCGA
Statistics
Matches: 155, Mismatches: 22, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
183 53 0.34
184 42 0.27
185 60 0.39
ACGTcount: A:0.20, C:0.25, G:0.30, T:0.25
Consensus pattern (185 bp):
AGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACAC
AGGAGGGGACCGGGCCGATCCCCGACTTGCGCATTCTACCTCTCCGATGGGCTAAGCACCCGCAC
GCTTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGAATAT
Found at i:32453360 original size:159 final size:158
Alignment explanation
Indices: 32453062--32453446 Score: 359
Period size: 159 Copynumber: 2.4 Consensus size: 158
32453052 ACCTCTCCAG
* * *** * *
32453062 TCGGCTGAGCGCCCGCACGC-CTGTTTCAT-GGGTTAGCTTAGGCATAGGGAGTTCAATCAATGT
1 TCGGCTCAGCGCCCGCACGCTC-GTTTCATGGGGTGA-CTTA-GCATACAAAGTTCATTCCATGT
** * * * * * *
32453125 CTAAGCCCCAG-TCGAACAGAGGGTTGTGGCAGTGGGACCGACAGCACGCAGAGGGGGATCGGGC
63 CTAAG-ATCAGATCAAACCGAGGGTTGTGACAGTAGGACCGACAGCACACAGAGGGGGACCGGGC
* *
32453189 CAGTCCCCGGCTTGCACATTATGCCTCT-TCGG
127 CAGTCCCCGGCTTGCACATTATGCCACTCT-GA
* * * * *
32453221 TCGGCTCAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTGTGCATATAAAGTTCATTCCCA-GTC
1 TCGGCTCAGCGCCCGCACGCTCGTTTCATGGGGTGACTT-AGCATACAAAGTTCATT-CCATGTC
* *
32453285 TAAGATCAGATCAAACCGAGGGTTGTGATAGTAGGATCGACAGCACACAGAGGGGGACCGGGCC-
64 TAAGATCAGATCAAACCGAGGGTTGTGACAGTAGGACCGACAGCACACAGAGGGGGACCGGGCCA
*** ** *
32453349 GATCTTTGGCTTGTGCATTCTGCCACTCTGA
129 G-TCCCCGGCTTGCACATTATGCCACTCTGA
* * *
32453380 TCGGCTGAGCGCCCGCACGCTCGTTTCATGGGGTGGCTTAGCATACAGAGTTCATTCCATGTCTA
1 TCGGCTCAGCGCCCGCACGCTCGTTTCATGGGGTGACTTAGCATACAAAGTTCATTCCATGTCTA
32453445 AG
66 AG
32453447 CATACAGAGT
Statistics
Matches: 181, Mismatches: 37, Indels: 17
0.77 0.16 0.07
Matches are distributed among these distances:
157 3 0.02
158 25 0.14
159 145 0.80
160 8 0.04
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (158 bp):
TCGGCTCAGCGCCCGCACGCTCGTTTCATGGGGTGACTTAGCATACAAAGTTCATTCCATGTCTA
AGATCAGATCAAACCGAGGGTTGTGACAGTAGGACCGACAGCACACAGAGGGGGACCGGGCCAGT
CCCCGGCTTGCACATTATGCCACTCTGA
Found at i:32453448 original size:26 final size:26
Alignment explanation
Indices: 32453419--32453472 Score: 92
Period size: 26 Copynumber: 2.1 Consensus size: 26
32453409 GGGGTGGCTT
32453419 AGCATACAGAGTTCATT-CCATGTCTA
1 AGCATACAGAGTTCATTCCCA-GTCTA
32453445 AGCATACAGAGTTCATTCCCAGTCTA
1 AGCATACAGAGTTCATTCCCAGTCTA
32453471 AG
1 AG
32453473 ATTTTGAGCC
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.89
27 3 0.11
ACGTcount: A:0.31, C:0.24, G:0.17, T:0.28
Consensus pattern (26 bp):
AGCATACAGAGTTCATTCCCAGTCTA
Found at i:32457095 original size:26 final size:26
Alignment explanation
Indices: 32457065--32457117 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
32457055 GTTGGCTTAG
*
32457065 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
32457091 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
32457117 G
1 G
32457118 ATCGAATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:32457602 original size:26 final size:26
Alignment explanation
Indices: 32457566--32457618 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32457556 GTTGGCTTGG
*
32457566 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
32457592 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
32457618 G
1 G
32457619 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:32457720 original size:11 final size:11
Alignment explanation
Indices: 32457688--32457713 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
32457678 CTCTGGGCAC
32457688 CATCACCGGAG
1 CATCACCGGAG
32457699 CATCACCGGAG
1 CATCACCGGAG
32457710 CATC
1 CATC
32457714 GTCGGAGAGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.27, C:0.38, G:0.23, T:0.12
Consensus pattern (11 bp):
CATCACCGGAG
Found at i:32458823 original size:158 final size:157
Alignment explanation
Indices: 32458390--32458825 Score: 407
Period size: 159 Copynumber: 2.8 Consensus size: 157
32458380 GATCAGCAGT
* * * * *
32458390 ACGCAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTTTGCCTCTCTGGCCGGCTGAGCGCCCG
1 ACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTGAGC-TCCG
* *
32458455 CACA-CCCATTTTGTGGGTTGGCTTAGGCATA-GGTAGTTCATACCATGTCTAAGTCCTAGCCGG
65 CA-AGCCCGTTTTGTGGGTTGGCTTAGGCATACGG-AGTTCATTCCATGTCTAAGTCCTAGCCGG
* ** ** *
32458518 ACTGAGGGTTGTGGCAACGGGATCGGCAGC
128 ACAGAGGGTTACGGCAACAAGATCGACAGC
** ** ** * * * * *
32458548 ACATAGAGGGGGACTAGGTGGATCCCCGGCTTGTGCATTATGCCTCTTC-AGTCGGTTCAGCTCC
1 ACGCAG-GGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGA-CCGGCTGAGCT-C
* * * * *
32458612 CGCACGCTCGTTTTGTGGGTTGACTTATGCATACGGAGTTCATTCCCA-ATCTAAGAT-C-AGAC
63 CGCAAGCCCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAG-TCCTAG-C
* * *
32458674 TGGACAGAGGGTTACGGCAGCAAGATCGATAGC
125 CGGACAGAGGGTTACGGCAACAAGATCGACAGC
* * * * *
32458707 ACGCAGGGGGGACCGGGCCAATCCCCAGCTTGCGCATTCTACCTCTCCGACCGGCTGAGCATCTG
1 ACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTGAGC-TCCG
32458772 CAAGCCCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGT
65 CAAGCCCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGT
32458826 ATACAGAGTT
Statistics
Matches: 214, Mismatches: 53, Indels: 23
0.74 0.18 0.08
Matches are distributed among these distances:
157 4 0.02
158 91 0.43
159 113 0.53
160 6 0.03
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (157 bp):
ACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTGAGCTCCGC
AAGCCCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGTCCTAGCCGGACA
GAGGGTTACGGCAACAAGATCGACAGC
Found at i:32458836 original size:26 final size:26
Alignment explanation
Indices: 32458800--32458850 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
32458790 TGGCTTAGGC
* *
32458800 ATACGGAGTTC-ATTCCATGTCTAAGT
1 ATACAGAGTTCAATCCCA-GTCTAAGT
32458826 ATACAGAGTTCAATCCCAGTCTAAG
1 ATACAGAGTTCAATCCCAGTCTAAG
32458851 ATTTTGAGCC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 17 0.77
27 5 0.23
ACGTcount: A:0.31, C:0.22, G:0.18, T:0.29
Consensus pattern (26 bp):
ATACAGAGTTCAATCCCAGTCTAAGT
Found at i:32459927 original size:159 final size:157
Alignment explanation
Indices: 32459533--32460034 Score: 458
Period size: 159 Copynumber: 3.2 Consensus size: 157
32459523 CCCAATCTAA
* * ** * *
32459533 GCATACAGAGTTCATTCTGA-GTCTAAGATTGGACCAGACCAAGGGTTACGATAGTAGGATCGAC
1 GCATACGGAGTTCATTC-CATGTCTAAGATCAGACCAGACCAAGGGTTGCGACAGTAGGATCGAC
* * * *
32459597 AGCACGTAGG-GGGGACCGAGCCGATCCCCGGCTTACGCATTTGCCTCTCTGGCCAGCTGAGCGC
65 AACACGCAGGAGGGGACCGAGCCGATCCCCGGCTTACGCATTTGCCTCTCT-GACGGCTGAGCGC
* * *
32459661 CCGCACGCTCGTATCATGGG-TCAGCTTAG
129 CCGCAAGCTCGTTTCATGGGTTGA-CTTAG
* ** * * * * * ** *
32459690 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCGGACCGAGGGTTGTGGCAGCGGGA-CTGG
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGACCAGACCAAGGGTTGCGACAGTAGGATC-GA
* * * ** * * * *
32459753 CCACACGCAGAAGGGGACCGGGCCGATCCCCGGCTTGTGAATTATGCCTCTCCGATCGGCTCAAC
64 CAACACGCAGGAGGGGACCGAGCCGATCCCCGGCTTACGCATT-TGCCTCTCTGA-CGGCTGAGC
* * **
32459818 GCCCGCATGCTCATTTTGTGGGTTGACTTAG
127 GCCCGCAAGCTCGTTTCATGGGTTGACTTAG
32459849 GCATACGGAGTTCATTCC-TAGTCTAAGATCAGACCAGACCAAGGGTTGCGACAGTAGGATCGAC
1 GCATACGGAGTTCATTCCAT-GTCTAAGATCAGACCAGACCAAGGGTTGCGACAGTAGGATCGAC
* ** * * * *
32459913 AACACACAGGAGGGGGTCAAGCCGATCCCCGACTTACGCATTCTTCCTCTCTGACTGGCTGAGTG
65 AACACGCAGGAGGGGACCGAGCCGATCCCCGGCTTACGCATT-TGCCTCTCTGAC-GGCTGAGCG
* *
32459978 CCTGCAAGCTCGTTTCATGGGTTGGCTTAG
128 CCCGCAAGCTCGTTTCATGGGTTGACTTAG
32460008 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
32460035 CATACGGAGT
Statistics
Matches: 263, Mismatches: 70, Indels: 22
0.74 0.20 0.06
Matches are distributed among these distances:
156 2 0.01
157 47 0.18
158 34 0.13
159 176 0.67
160 4 0.02
ACGTcount: A:0.22, C:0.27, G:0.29, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACCAGACCAAGGGTTGCGACAGTAGGATCGACA
ACACGCAGGAGGGGACCGAGCCGATCCCCGGCTTACGCATTTGCCTCTCTGACGGCTGAGCGCCC
GCAAGCTCGTTTCATGGGTTGACTTAG
Found at i:32460038 original size:26 final size:26
Alignment explanation
Indices: 32460008--32460060 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
32459998 GTTGGCTTAG
32460008 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
32460034 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
32460060 G
1 G
32460061 ATCAAACTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:32460918 original size:26 final size:26
Alignment explanation
Indices: 32460888--32460940 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32460878 GTTGGCTTAG
32460888 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
32460914 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
32460940 G
1 G
32460941 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:32461648 original size:26 final size:26
Alignment explanation
Indices: 32461602--32461673 Score: 83
Period size: 26 Copynumber: 2.8 Consensus size: 26
32461592 TTTGACTTAG
*
32461602 GCATAC-GAAGTTCATCTCCAATCTAA
1 GCATACAG-AGTTCATCCCCAATCTAA
* *
32461628 GCCTATAGAGTTCATCCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* *
32461654 GCATACGGAGTTCATTCCCA
1 GCATACAGAGTTCATCCCCA
32461674 GTCAAAGATC
Statistics
Matches: 38, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
26 37 0.97
27 1 0.03
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:32462599 original size:147 final size:144
Alignment explanation
Indices: 32462404--32462733 Score: 346
Period size: 146 Copynumber: 2.3 Consensus size: 144
32462394 CCGTTTTGTT
* * * * * **
32462404 GGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCTTAGCCGGACCGAGGGTT-ATGGCA
1 GGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATCAGCCGGACCAAGGATTAATAACA
* *
32462468 GCATGCAGAGGGGGACCGAATCGATCCTC-GACTTACGCATTATGCCTCTTCGACCGGCTCAGTG
66 -CAT--AG-GGGGGACCGAACCGATCCTCAG-CTTACGCATTATGCCTCTTCGACCGGCTCAGCG
32462532 -CCTGCACGCTCGTTTCATG
126 ACC-GCACGCTCGTTTCATG
* *
32462551 GGTTGACTTAGGCATACGGAGTTCATTCC-TAGTCTAAG-ATCAGACCGGATCAAGGATTGCAAT
1 GGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCATCAG-CCGGACCAAGGATT--AAT
** ** * ** * *
32462614 AACACATAGGGGGGACCGGGCCGATCCTCAGCTTGGGCATTCTGCCTCTTCGATTGGTTGAGCGA
62 AACACATAGGGGGGACCGAACCGATCCTCAGCTTACGCATTATGCCTCTTCGACCGGCTCAGCGA
*
32462679 CCGCACGCTCGTTTCGTG
127 CCGCACGCTCGTTTCATG
32462697 GGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
1 GGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
32462734 CCGTACGAAG
Statistics
Matches: 153, Mismatches: 22, Indels: 17
0.80 0.11 0.09
Matches are distributed among these distances:
146 95 0.62
147 51 0.33
149 3 0.02
150 4 0.03
ACGTcount: A:0.20, C:0.25, G:0.29, T:0.26
Consensus pattern (144 bp):
GGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATCAGCCGGACCAAGGATTAATAACA
CATAGGGGGGACCGAACCGATCCTCAGCTTACGCATTATGCCTCTTCGACCGGCTCAGCGACCGC
ACGCTCGTTTCATG
Found at i:32463540 original size:26 final size:26
Alignment explanation
Indices: 32463504--32463556 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
32463494 GTTGGCTCAG
32463504 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATATGGAGTTCATTCCCA-GTCTAA
32463530 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
32463556 G
1 G
32463557 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:32463897 original size:170 final size:170
Alignment explanation
Indices: 32463538--32463899 Score: 372
Period size: 170 Copynumber: 2.1 Consensus size: 170
32463528 AAGCATATGG
* *
32463538 AGTTCATTCCCAGTCTAAG-ATCAGACCAGATCGAGGGTTACGATAGCAGGACCAACAGTAAGAT
1 AGTTCA-TCCCAGTCTAAGCATCAGACCAGACCGAGGGTTACGATAGCAAGACCAACAGTAAGAT
* * * * * ** * * **
32463602 CGATAGCACGTAGGGGGGGACCAGTCGATCCTCGACTTACGCATTCTACCTCTCTGGTCGGCTGA
65 CGACAACACGTAGAGGGGGACCAGGCGATCCTCGACTTACGCATTATACCTCTCCAGCCGACCAA
* * * *
32463667 GTGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGG
130 GCGACCGCACGCTCATTTCATGGGTTGACTTAGGCATACGA
* * * ** * * *
32463708 AGTTAATTCCATATCTAAGCCAT-AG-CCAGACCGAGGGTTGTGGTAGCAAGACCGACAGTGAGA
1 AGTTCATCCCA-GTCTAAG-CATCAGACCAGACCGAGGGTTACGATAGCAAGACCAACAGTAAGA
* * *
32463771 TCGACAACACGTAGAGGGGGATCGGGCTGATCCTCGACTTACG-ATTATGCCTCTCCAGCCGACC
64 TCGACAACACGTAGAGGGGGACCAGGC-GATCCTCGACTTACGCATTATACCTCTCCAGCCGACC
* * *
32463835 AAGCGACCGTACGCTCGTTTCATGGGTTGACTTAGGTATACGA
128 AAGCGACCGCACGCTCATTTCATGGGTTGACTTAGGCATACGA
32463878 AGTTCATCCCCAGTCTAAGCAT
1 AGTTCAT-CCCAGTCTAAGCAT
32463900 AAGGAGTTCA
Statistics
Matches: 153, Mismatches: 34, Indels: 11
0.77 0.17 0.06
Matches are distributed among these distances:
169 7 0.05
170 124 0.81
171 20 0.13
172 2 0.01
ACGTcount: A:0.25, C:0.26, G:0.27, T:0.23
Consensus pattern (170 bp):
AGTTCATCCCAGTCTAAGCATCAGACCAGACCGAGGGTTACGATAGCAAGACCAACAGTAAGATC
GACAACACGTAGAGGGGGACCAGGCGATCCTCGACTTACGCATTATACCTCTCCAGCCGACCAAG
CGACCGCACGCTCATTTCATGGGTTGACTTAGGCATACGA
Found at i:32464405 original size:25 final size:26
Alignment explanation
Indices: 32464370--32464421 Score: 81
Period size: 25 Copynumber: 2.0 Consensus size: 26
32464360 GCTGACTTAG
32464370 GCATACGGAGTTCATT-CCATATCTAA
1 GCATACGGAGTTCATTCCCA-ATCTAA
32464396 GCATA-GGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
32464421 G
1 G
32464422 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 17 0.68
26 8 0.32
ACGTcount: A:0.31, C:0.23, G:0.17, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:32466308 original size:26 final size:26
Alignment explanation
Indices: 32466279--32466332 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
32466269 CCGGTCCAAT
*
32466279 CTTAGACTGGGAATGAACTCCGTTTG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
32466305 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
32466331 CT
1 CT
32466333 AAGTCAACGC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:32467433 original size:158 final size:158
Alignment explanation
Indices: 32466999--32467457 Score: 462
Period size: 159 Copynumber: 2.9 Consensus size: 158
32466989 TCCGTATGCA
* ** *
32466999 TAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACGAAATGAATGTACGGGCGCTCAGCCG
1 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCG
* * * * * * **
32467064 GTTGGAGAAGCAGAATGTGCAAGCCGGGGATCGGCTCGGTCCCCCCTACGTGCTGTCGATCCTAT
66 GCTGGAGAGGCAGAATGTGCAAGCTGGGGATCGGCCCGAT-CCCCCTACGTGCTGCCGATCCTGC
* *
32467129 TGCTGCAACCCTTGGTTCGCGTCTAATCT
130 TGCCGCAACCCTTGGTTCGCGTCTAAGCT
* * * ** * * * *
32467158 TAGTC-TGGGAATGCACACCGTATGCCTAAATCAACCCACGAAATGAGCGTGTGGGCGTTGAGCT
1 TAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCC
* * * * * *
32467222 GGCTGGAGAGGCATAATGTGCAAG-TCGGGATCAGCCCGATCCCCTTCTGCGTGCTACCGGT-CT
65 GGCTGGAGAGGCAGAATGTGCAAGCTGGGGATCGGCCCGATCCCC--CTACGTGCTGCCGATCCT
* *
32467285 CGCTGCCACAACCCTTGG-TC-CAG-CTAGGGCT
128 -GCTGCCGCAACCCTTGGTTCGC-GTCTA-AGCT
* * * *
32467316 TAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAGCCG
1 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCG
* * *
32467381 ACCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGATCCCCCATACGTGCTGCCGATCCTGC
66 GCTGGAGAGGCAGAATGTGCAAGCTGGGGATCGGCCCGATCCCCC-TACGTGCTGCCGATCCTGC
32467446 TGCCGCAACCCT
130 TGCCGCAACCCT
32467458 CGATCCAGTC
Statistics
Matches: 236, Mismatches: 54, Indels: 21
0.76 0.17 0.07
Matches are distributed among these distances:
157 9 0.04
158 112 0.47
159 115 0.49
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (158 bp):
TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCG
GCTGGAGAGGCAGAATGTGCAAGCTGGGGATCGGCCCGATCCCCCTACGTGCTGCCGATCCTGCT
GCCGCAACCCTTGGTTCGCGTCTAAGCT
Found at i:32467465 original size:158 final size:157
Alignment explanation
Indices: 32466999--32467498 Score: 463
Period size: 158 Copynumber: 3.2 Consensus size: 157
32466989 TCCGTATGCA
* ** *
32466999 TAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACGAAATGAATGTACGGGCGCTCAGCCG
1 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCG
* * * * * * **
32467064 GTTGGAGAAGCAGAATGTGCAAGCCGGGGATCGGCTCGGTCCCCCCTACGTGCTGTCGATCCTAT
66 GCTGGAGAGGCAGAATGTGCAAGCTGGGGATCGGCCCGAT-CCCCCTACGTGCTGCCGATCCTGC
* * * *
32467129 TGCTGCAACCCTTGGTTCGC-GTCTAATCT
130 TGCCGCAACCC-TCGATC-CAGTCTAAGCT
* * * ** * * * *
32467158 TAGTC-TGGGAATGCACACCGTATGCCTAAATCAACCCACGAAATGAGCGTGTGGGCGTTGAGCT
1 TAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCC
* * * * * *
32467222 GGCTGGAGAGGCATAATGTGCAAG-TCGGGATCAGCCCGATCCCCTTCTGCGTGCTACCGGT-CT
65 GGCTGGAGAGGCAGAATGTGCAAGCTGGGGATCGGCCCGATCCCC--CTACGTGCTGCCGATCCT
* * * *
32467285 CGCTGCCACAACCCTTGGTCCAG-CTAGGGCT
128 -GCTGCCGCAACCCTCGATCCAGTCTA-AGCT
* * * *
32467316 TAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAGCCG
1 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCG
* * *
32467381 ACCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGATCCCCCATACGTGCTGCCGATCCTGC
66 GCTGGAGAGGCAGAATGTGCAAGCTGGGGATCGGCCCGATCCCCC-TACGTGCTGCCGATCCTGC
* *
32467446 TGCCGCAACCCTCGATCCAGTCTGATCT
130 TGCCGCAACCCTCGATCCAGTCTAAGCT
*
32467474 TAGA-TTGGGAATGAACTCCGTATGC
1 TAGACAT-GGAATGAACTCCGTATGC
32467499 TTAGACTAGG
Statistics
Matches: 266, Mismatches: 63, Indels: 25
0.75 0.18 0.07
Matches are distributed among these distances:
157 10 0.04
158 143 0.54
159 113 0.42
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.20
Consensus pattern (157 bp):
TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCG
GCTGGAGAGGCAGAATGTGCAAGCTGGGGATCGGCCCGATCCCCCTACGTGCTGCCGATCCTGCT
GCCGCAACCCTCGATCCAGTCTAAGCT
Found at i:32468246 original size:26 final size:26
Alignment explanation
Indices: 32468202--32468252 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
32468192 TCTTAGATTG
*
32468202 GGAATGAACTCCGGATGCTTAGACAT
1 GGAATGAACTCCGGATGCTAAGACAT
* **
32468228 GGAATGAACTCTGTCTGCTAAGACA
1 GGAATGAACTCCGGATGCTAAGACA
32468253 ACCCATGGAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.31, C:0.20, G:0.25, T:0.24
Consensus pattern (26 bp):
GGAATGAACTCCGGATGCTAAGACAT
Found at i:32469556 original size:26 final size:26
Alignment explanation
Indices: 32469515--32469567 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
32469505 TCGGTCCACT
32469515 CTTAGACGGGGAATGAACTCCGTATG
1 CTTAGACGGGGAATGAACTCCGTATG
32469541 CTTAGACTGGGG-ATGAACTCCGTATG
1 CTTAGAC-GGGGAATGAACTCCGTATG
32469567 C
1 C
32469568 CAAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.25, C:0.21, G:0.30, T:0.25
Consensus pattern (26 bp):
CTTAGACGGGGAATGAACTCCGTATG
Found at i:32470279 original size:26 final size:25
Alignment explanation
Indices: 32470238--32470288 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 25
32470228 GGCTTAAAAT
*
32470238 CTTAGACTGGAATGAACTCTGTATG
1 CTTAGACTGGAATGAACTCCGTATG
*
32470263 CTTAGACATTGAATGAACTCCGTATG
1 CTTAGAC-TGGAATGAACTCCGTATG
32470289 GCCTAAGCCA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTCCGTATG
Found at i:32471156 original size:26 final size:26
Alignment explanation
Indices: 32471118--32471170 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32471108 TCGGTCTGAT
32471118 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
32471144 CTTAGACAT-GGAATGAACTCCTTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
32471170 C
1 C
32471171 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:32471658 original size:26 final size:26
Alignment explanation
Indices: 32471617--32471669 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32471607 ACGGTCTGAT
32471617 CTTAGACTGGGAATGAACTTTATATG
1 CTTAGACTGGGAATGAACTTTATATG
*
32471643 CTTAGACTAGGG-ATGAACTTTGTATG
1 CTTAGACT-GGGAATGAACTTTATATG
32471669 C
1 C
32471670 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.13, G:0.25, T:0.34
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTTATATG
Found at i:32472028 original size:26 final size:26
Alignment explanation
Indices: 32471999--32472050 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
32471989 CGATCTGATT
32471999 TTAGAC-TGGGAATGAACTCCGTATGC
1 TTAGACAT-GGAATGAACTCCGTATGC
32472025 TTAGACATGGAATGAACTCCGTATGC
1 TTAGACATGGAATGAACTCCGTATGC
32472051 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
TTAGACATGGAATGAACTCCGTATGC
Found at i:32472452 original size:159 final size:158
Alignment explanation
Indices: 32472026--32472470 Score: 443
Period size: 160 Copynumber: 2.8 Consensus size: 158
32472016 TCCGTATGCT
** * * *
32472026 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACTAGTATGCGGGCACTCAGTCG
1 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAC-AGCGTGCGGGCGCTTAGCCG
* * * * *
32472091 ATC-GATGAGGCAGAATGCGCAAGCCAGGGATGGGCCCGATCCCCCCTGCGTGCTGTCGATCCTG
65 ATCGGA-GAGGCAGAATGCGCAAGCCAGGGATCGGCCTGGTCCCCCCTGCGTGCTCTCGATCCCG
* * *
32472155 CCTGCCACAACCCTCGATCCAGTCTGATCT
129 CCTGCCACAACCCTCGATCCAGACTGAGCA
* * * ** * *
32472185 TAGAC-TGGGAATGAACTCTGTATTCCTAAGTCAACCCACGAAACAGCGTGTTGGCGTTTGAACA
1 TAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAGCGTGCGGGCGCTT-AGC-
* * * * *
32472249 AGATCGGAGAGGCAAAATGCGCAAACCAGGGATCGGCCTAGTCCCCCTCTGTGTGCTACT-GATC
63 CGATCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCTGGTCCCCC-CTGCGTGCT-CTCGATC
* *
32472313 CCG-CTGCCACAACCCTC-AGT-CTGACTGGGGCA
126 CCGCCTGCCACAACCCTCGA-TCCAGACT-GAGCA
* *
32472345 TAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTTAGCCG
1 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAC-AGCGTGCGGGCGCTTAGCCG
* ** * * *
32472410 GTCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCTGGTCCCCCCTGCATGCTATCGATC
65 ATCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCTGGTCCCCCCTGCGTGCTCTCGATC
32472471 TTACTGCCGT
Statistics
Matches: 228, Mismatches: 47, Indels: 23
0.77 0.16 0.08
Matches are distributed among these distances:
157 1 0.00
158 20 0.09
159 84 0.37
160 94 0.41
161 28 0.12
162 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (158 bp):
TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAGCGTGCGGGCGCTTAGCCGA
TCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCTGGTCCCCCCTGCGTGCTCTCGATCCCGCC
TGCCACAACCCTCGATCCAGACTGAGCA
Found at i:32472517 original size:884 final size:875
Alignment explanation
Indices: 32470236--32472579 Score: 2832
Period size: 879 Copynumber: 2.7 Consensus size: 875
32470226 ATGGCTTAAA
* *
32470236 ATCTTAGACT-GGAATGAACTCTGTATGCTTAGACATTGAATGAACTCCGTATGGCCTAAGCCAA
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTAT-GCCTAAGCCAA
* * * * * * * * *
32470300 -CCACGAAACGAGTGTACCGATGCTCA-ACGACCGAAGAGGCAAAATGCACATGCCAGGGATTAG
65 CCCACGAAACGAGTATGCGGGTGCTCAGACGATCG-AGAGGCAGAATGCGCAAGCCAGGGATCAG
* ** *
32470363 CCCAATCCCCCACTATGTGCTGTCGATCCTGCTGCCACAACCCTC-AGT-CTGATCTGATCTTAG
129 CCCGATCCCCC-CTGCGTGCTGTCGATCCTGCTGCCACAACCCTCGA-TCCAG-TCTGATCTTAG
* * * * * * * * *
32470426 ACTAGGAATTAACTCCGTATGCATAAGTCAACCCACGAAAC-GAGTGT-ACG-GGCACTGAGTCG
191 ACTGGGAATGAACTCTGTATTCCTAAGTCAACCCACGAAACAGAGTGTGGCGTTGAACAGA-TC-
* * * * *
32470488 GCCGAGGAGGCATAATGTGCAAGTC-GAGGATCGGCTCGGTCTCCCTCTGCGTGCTGTCGGTCCC
254 G--GA-GAGGCATAATGTGCAAGCCAG-GGATCGGCTCGGTCCCCCTCTGTGTGCTCT-GATCCC
* * * * * *
32470552 ACTGCCACAACCTTCGGTCCGGCTGGGGCTTAGACATCGAATGAACTCCGTATGCCTAAGCCAAC
314 GCTGCCACAACCCTCGGTCCGACTGGGGCATAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
** * * * * * * * *
32470617 CCATAAAACAGGCGTGCGGGCG-TTCAATCGATTGGAGAGGCATAATGCGTAAGCAGGGGTTCAA
379 CCACGAAACAGGCGTGCGGGCGCTT-AGTCGGTCGGAGAGGCAGAATGCGCAAGCTGGGGATCGA
* *
32470681 CCTGGTCCCCCCTGCGTGCTGTCGATCCTACTACCGCAACCCTCGATACGGTCTGATCTTAGACT
443 CCTGGTCCCCCCTGCATGCTGTCGATCCTACTGCCGCAACCCTCGATACGGTCTGATCTTAGACT
* * *
32470746 GGAAATGAACTCCGTATGCTTAGACTGGGGATGAACTCTATATACCTAAGTCAACCCACGAAACG
508 GG-AATGAACTCTGTATGCTTAGACT-GGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACG
* * * *
32470811 AGTGTACGGGCGCTCACCCGACCGGAGAGGCTGGCCGGAGAGGCATAATGCACAAGCCGGGGATC
571 AGCGTGCGGGCGCTCACCCGACCGAAGAGGCTGGCCGGAGAGGCATAATGCACAAGCCGAGGATC
** * * *
32470876 AGCCCGATCCCTCACTGCATGCTGTTGATCCCGTTGCCAATCCTGCTACCACAACCCTTAATCCG
636 AGCCCGATCCCTCACTGCATGCTACTGATCCCGCTACCAATCCTGCTACCACAACCCTCAATCCG
* * * *
32470941 GCTAGGGCTTAGACGTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATAAGCGTGCAGGC
701 GCTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCAAACCCACGAAATAAGCGTACAGGC
* * * * *
32471006 GCTCAGCCGACTGGATAGGCAGAATGCGAAAGCCAGAGATCGGTCTGATCCCCCCTACGTTCTAT
766 GCTCAGCCGACCGGAGAGGCAGAATGCGAAAGCCAGAGATCGGCCCGATCCCCCCTACGTGCTAT
* * * * *
32471071 CGATCCTGCTGCTGGTCTTGCTACCAGAACCCTCAGTTCGGTCTG
831 CGATCCTGCTGCTAGTCTTGCTACCACAACCATCAGTCCGATCTG
*
32471116 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAAC
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * *
32471181 CCATGAAACGAGCATGCGGGTGCTCAGCCGACTGGAGAGGCAGAATGCGCAAGCCGGGGATCAGC
66 CCACGAAACGAGTATGCGGGTGCTCAGACGA-TCGAGAGGCAGAATGCGCAAGCCAGGGATCAGC
* * * * ** * *
32471246 CCGGT-CCCCCTGCATGCTAT-GATCCTGCTACTGCAACCTTCGATCCGGTCTGATCTTAGACTG
130 CCGATCCCCCCTGCGTGCTGTCGATCCTGCTGCCACAACCCTCGATCCAGTCTGATCTTAGACTG
* * * * * * *
32471309 GGAAAGAACTCTGTATGT-CTAAGTGAACCCATGAAA-TGAGTGTGCGGGCGTTGAGCCGACCGG
195 GGAATGAACTCTGTAT-TCCTAAGTCAACCCACGAAACAGAGTGT---GGCGTTGAACAGATCGG
** * * *
32471372 AGAGGCATAATGTGCAAGCCAGGGATCAACTCGGTCCCTCTCTGTGTGCTGCCGATCTCGCTGCC
256 AGAGGCATAATGTGCAAGCCAGGGATCGGCTCGGTCCCCCTCTGTGTGCT-CTGATCCCGCTGCC
*
32471437 ACAACCCTCGGTCCGACTGGGGCATAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCGCGA
320 ACAACCCTCGGTCCGACTGGGGCATAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGA
* * * * * ** *
32471502 AACAGGCGTACGGGCGCTCAGTCGGTCGGAGAGGTAGAATGCACATGCTAAGGATCGACCCGGTC
385 AACAGGCGTGCGGGCGCTTAGTCGGTCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCTGGTC
* *
32471567 CCCCTTGCATGCTGTTGATCCTACTGCCGCAACCCTCGATACGGTCTGATCTTAGACTGGGAATG
450 CCCCCTGCATGCTGTCGATCCTACTGCCGCAACCCTCGATACGGTCTGATCTTAGACT-GGAATG
* * *
32471632 AACTTTATATGCTTAGACTAGGGATGAACTTTGTATGCCTAAGTCAACCCACGAAACGAGCGTGC
514 AACTCTGTATGCTTAGACT-GGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGC
* * * **
32471697 GGGCGTTCAGCCGATCGAAGAGGCTGGCCGGAGAGGCATAATGTGCAAGCCGAGGATCAGCCC-A
578 GGGCGCTCACCCGACCGAAGAGGCTGGCCGGAGAGGCATAATGCACAAGCCGAGGATCAGCCCGA
** * * * ** * *
32471761 GTCCCTCTTTGCGTGCTACTGATCCCGCTACCGATCCTGCTACCATAACCCTCGGTCCGTCTGGG
643 -TCCCTCACTGCATGCTACTGATCCCGCTACCAATCCTGCTACCACAACCCTCAATCCGGCTAGG
* * *
32471826 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCAAACCCACGAAATGAGTGTACGGGCGCTCAG
707 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCAAACCCACGAAATAAGCGTACAGGCGCTCAG
** *
32471891 CC-AGCCGGAGAGGCAGAATGCGAAAGCTTGAAGATCGGCCCGATCCCCCCTACGTGCTGTCGAT
772 CCGA-CCGGAGAGGCAGAATGCGAAAGCCAG-AGATCGGCCCGATCCCCCCTACGTGCTATCGAT
* ** *
32471955 CCTGTTGCTAGTCTTGCTGTCACAACCATCGGTCCGATCTG
835 CCTGCTGCTAGTCTTGCTACCACAACCATCAGTCCGATCTG
*
32471996 ATTTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
* ** * **
32472061 CCACGAAACTAGTATGCGGGCACTCAGTCGATCGATGAGGCAGAATGCGCAAGCCAGGGATGGGC
66 CCACGAAACGAGTATGCGGGTGCTCAGACGATCGA-GAGGCAGAATGCGCAAGCCAGGGATCAGC
32472126 CCGATCCCCCCTGCGTGCTGTCGATCCTGCCTGCCACAACCCTCGATCCAGTCTGATCTTAGACT
130 CCGATCCCCCCTGCGTGCTGTCGATCCTG-CTGCCACAACCCTCGATCCAGTCTGATCTTAGACT
*
32472191 GGGAATGAACTCTGTATTCCTAAGTCAACCCACGAAACAGCGTGTTGGCGTTTGAACAAGATCGG
194 GGGAATGAACTCTGTATTCCTAAGTCAACCCACGAAACAGAGTG-TGGCG-TTGAAC-AGATCGG
* * * *
32472256 AGAGGCAAAATGCGCAAACCAGGGATCGGC-CTAGTCCCCCTCTGTGTGCTACTGATCCCGCTGC
256 AGAGGCATAATGTGCAAGCCAGGGATCGGCTC-GGTCCCCCTCTGTGTGCT-CTGATCCCGCTGC
* *
32472320 CACAACCCTCAGTCTGACTGGGGCATAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACG
319 CACAACCCTCGGTCCGACTGGGGCATAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACG
* *
32472385 AAACGGGCGTGCGGGCGCTTAGCCGGTCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCTGGT
384 AAACAGGCGTGCGGGCGCTTAGTCGGTCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCTGGT
* * * * *
32472450 CCCCCCTGCATGCTATCGATCTTACTGCCGTAACCTTCGGTACGGTCTGATCTTAGACTGTGAAT
449 CCCCCCTGCATGCTGTCGATCCTACTGCCGCAACCCTCGATACGGTCTGATCTTAGACTG-GAAT
*
32472515 GAACTCTGTATGCTTAGACTGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC
513 GAACTCTGTATGCTTAGACTGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGC
32472580 AGGCACTAGG
Statistics
Matches: 1236, Mismatches: 197, Indels: 59
0.83 0.13 0.04
Matches are distributed among these distances:
878 2 0.00
879 525 0.42
880 216 0.17
881 76 0.06
882 44 0.04
883 116 0.09
884 256 0.21
885 1 0.00
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.21
Consensus pattern (875 bp):
ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
CCACGAAACGAGTATGCGGGTGCTCAGACGATCGAGAGGCAGAATGCGCAAGCCAGGGATCAGCC
CGATCCCCCCTGCGTGCTGTCGATCCTGCTGCCACAACCCTCGATCCAGTCTGATCTTAGACTGG
GAATGAACTCTGTATTCCTAAGTCAACCCACGAAACAGAGTGTGGCGTTGAACAGATCGGAGAGG
CATAATGTGCAAGCCAGGGATCGGCTCGGTCCCCCTCTGTGTGCTCTGATCCCGCTGCCACAACC
CTCGGTCCGACTGGGGCATAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGG
CGTGCGGGCGCTTAGTCGGTCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCTGGTCCCCCCT
GCATGCTGTCGATCCTACTGCCGCAACCCTCGATACGGTCTGATCTTAGACTGGAATGAACTCTG
TATGCTTAGACTGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC
ACCCGACCGAAGAGGCTGGCCGGAGAGGCATAATGCACAAGCCGAGGATCAGCCCGATCCCTCAC
TGCATGCTACTGATCCCGCTACCAATCCTGCTACCACAACCCTCAATCCGGCTAGGGCTTAGACA
TGGAATGAACTCCGTATGCCTAAGCAAACCCACGAAATAAGCGTACAGGCGCTCAGCCGACCGGA
GAGGCAGAATGCGAAAGCCAGAGATCGGCCCGATCCCCCCTACGTGCTATCGATCCTGCTGCTAG
TCTTGCTACCACAACCATCAGTCCGATCTG
Found at i:32472550 original size:25 final size:26
Alignment explanation
Indices: 32472501--32472552 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
32472491 ACGGTCTGAT
*
32472501 CTTAGACTGTGAATGAACTCTGTATG
1 CTTAGACTGTGAATGAACTCCGTATG
*
32472527 CTTAGACTG-GGATGAACTCCGTATG
1 CTTAGACTGTGAATGAACTCCGTATG
32472552 C
1 C
32472553 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 15 0.62
26 9 0.38
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (26 bp):
CTTAGACTGTGAATGAACTCCGTATG
Found at i:32473259 original size:26 final size:26
Alignment explanation
Indices: 32473220--32473272 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
32473210 GGCTCAAAAT
32473220 CTTAGACTGTGAATGAACTCCGTATG
1 CTTAGACTGTGAATGAACTCCGTATG
32473246 CTTAGACATG-GAATGAACTCCGTATG
1 CTTAGAC-TGTGAATGAACTCCGTATG
32473272 C
1 C
32473273 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGTGAATGAACTCCGTATG
Found at i:32473582 original size:159 final size:158
Alignment explanation
Indices: 32473245--32473711 Score: 532
Period size: 158 Copynumber: 2.9 Consensus size: 158
32473235 AACTCCGTAT
* *
32473245 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAAAGAGCGTGCGGGCGCTCAG
* * * * * *
32473310 TC-AGTCGGAAAGGCAGAATGTGCAAGTCAGGAATCGGCACGGTCCCCC-CTGCGTGCTGTCGAT
66 TCGA-TCGGAGAGGCAGAATGCGCAAGCCGGGGATC-GCCCGGTCCCCCTCTGCGTGCTGTCGAT
*
32473373 CCTGCTGTCACAACCCTCAGTCTGATCCAA
129 CCTGCTGCCACAACCCTCAGTCTGATCCAA
* * * * *
32473403 TCTTAGAC-TGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAAAGAGCGTGCGGGCGCTCA
* * * *
32473467 GCCGACCGGAGAGGCATAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCTCTGCGTGCTGTCGGT
65 GTCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATC-GCCCGGTCCCCCTCTGCGTGCTGTCGAT
* * ***
32473532 CCTGCTGCCACAACCCTCGGTCTG-GCTGGG
129 CCTGCTGCCACAACCCTCAGTCTGATC-CAA
* * *
32473562 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCTAC-AAAACAGGCGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAAAGA-GCGTGCGGGCGCTCA
* * *
32473626 GTCGATCGGAGAGGCAGAATGCGTAAGCCGGGGATCGACCCGGT-CCCCTTTGCGTGCTATCGAT
65 GTCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCG-CCCGGTCCCCCTCTGCGTGCTGTCGAT
* ***
32473690 CCTACTGTTGCAACCCTCAGTC
129 CCTGCTGCCACAACCCTCAGTC
32473712 CAGTATGATC
Statistics
Matches: 259, Mismatches: 43, Indels: 14
0.82 0.14 0.04
Matches are distributed among these distances:
157 1 0.00
158 133 0.51
159 124 0.48
160 1 0.00
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAAAGAGCGTGCGGGCGCTCAG
TCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGCCCGGTCCCCCTCTGCGTGCTGTCGATCC
TGCTGCCACAACCCTCAGTCTGATCCAA
Found at i:32474541 original size:26 final size:26
Alignment explanation
Indices: 32474490--32474542 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
32474480 CTTGTCCGAT
* *
32474490 CTTAGACTTGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
32474516 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
32474542 C
1 C
32474543 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:32476260 original size:26 final size:26
Alignment explanation
Indices: 32476224--32476276 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32476214 GTTGACTTAG
*
32476224 GCATACGGAGTTCA-TCCTCAGTCTAA
1 GCATACAGAGTTCATTCC-CAGTCTAA
32476250 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
32476276 G
1 G
32476277 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:32476557 original size:158 final size:158
Alignment explanation
Indices: 32476380--32476771 Score: 402
Period size: 158 Copynumber: 2.5 Consensus size: 158
32476370 GCTGAGCGCT
* * * *
32476380 CGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCG
1 CGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG-ACCAGACCG
* * * * **
32476444 AACCAAGGGTTGTGGTAGCGGGACCGACAGCACGCAGAAGG-GGACCGGGCTTATCC-CAGCTTA
65 AACCAAGGGTTATGGCAACAGGACCGACAGCACGCAG-AGGAGGACCGGGCCGATCCTCAGCTTA
32476507 CGCATTATGCCTCTCCGGCCT-GCTCAGCGCC
129 CGCATTATGCCTCTCCGG-CTGGCTCA-CGCC
* * * ** *
32476538 CGCACGCTTATTTCATGGGTTGACTTAGGCATACAAAGTTCATTCC-TAGTCTAAGATCAGACCG
1 CGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGACCAGACCG
* * * * * *
32476602 GACCGAGGGTTATGGCAACAGGATCGACAGCACGCAGGGGAGGACCGGGCCGATCCTCGGCTTGC
65 AACCAAGGGTTATGGCAACAGGACCGACAGCACGCAGAGGAGGACCGGGCCGATCCTCAGCTTAC
* * *
32476667 GCATTCTGCCTCTCTGGCTGGCTGACGCC
130 GCATTATGCCTCTCCGGCTGGCTCACGCC
* * * *
32476696 TGCACGCTCATTTTGTGGGTTGGCTTAGGCATACGGAGTTTATTCCCA-GTCTAAGATCAGACC-
1 CGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGACCAGACCG
*
32476759 AGATCAAGGGTTA
65 A-ACCAAGGGTTA
32476772 CGGTAGTAGG
Statistics
Matches: 190, Mismatches: 36, Indels: 16
0.79 0.15 0.07
Matches are distributed among these distances:
157 6 0.03
158 157 0.83
159 27 0.14
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (158 bp):
CGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCAGACCGA
ACCAAGGGTTATGGCAACAGGACCGACAGCACGCAGAGGAGGACCGGGCCGATCCTCAGCTTACG
CATTATGCCTCTCCGGCTGGCTCACGCC
Found at i:32476952 original size:173 final size:169
Alignment explanation
Indices: 32476620--32477096 Score: 500
Period size: 173 Copynumber: 2.8 Consensus size: 169
32476610 GTTATGGCAA
32476620 CAGGATCGACAGCACGCAGGGGAGGACCGGGCCGAT-CCTCGGCTTGCGCATTCTGCCTC-TCTG
1 CAGGATCGACAGCACGCAGGGG-GGACCGGG-CGATCCCT-GGCTTGCGCATTCTGCCTCTTC-G
** * ** *
32476683 -GCTGGCTGA-CGCCTGCACGCTCATTTTGTGGGTTGGCTTAGGCATACGGAGTTTATTCCCAGT
62 AGCAAGCTGAGCGCCCGCACGCT-ATTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCAGT
* *
32476746 CTAAG-ATCAGACCAGATCAAGGGTTACGGTAGTAGGACCAGTAG
125 CTAAGCACCAGACCAGACCAAGGGTTACGGTAGTAGGACCAGTAG
* *
32476790 CAGGATCGACAGCATGCAGGGGGGACCGGGTCGATCCCTGGCTTGCGTATTCTGCCTCTTCGACC
1 CAGGATCGACAGCACGCAGGGGGGACCGGG-CGATCCCTGGCTTGCGCATTCTGCCTCTTCGA--
* * * *
32476855 GCAAGCTGAGTGCCCGCAAGCTAGTTTCATGGGTTGGCTTAGGCATACAGAGCTCATTCCATGTC
63 GCAAGCTGAGCGCCCGCACGCTA-TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCA-GTC
* * * * ** *
32476920 TAAGCCCCAG-CCGGGCCGAGGGTTGTGGTAGTAGGACCGGTAG
126 TAAGCACCAGACCAGACCAAGGGTTACGGTAGTAGGACCAGTAG
* * * *
32476963 CAGGATCGGCAGCACGCAGAGGGGGATCGGGCTGATCCCTGACTTGCGCATTATGCCTCTTC-AG
1 CAGGATCGACAGCACGCAG-GGGGGACCGGGC-GATCCCTGGCTTGCGCATTCTGCCTCTTCGAG
* * * * *
32477027 CCAGCTGAGCACCCGCACGCTCCTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCT
64 CAAGCTGAGCGCCCGCACGCT-ATTTCATGGGTTGGCTTAGGCATACGGAGTTCAT-TCCAGTCT
32477092 AAGCA
127 AAGCA
32477097 TACGGAGTTC
Statistics
Matches: 256, Mismatches: 38, Indels: 25
0.80 0.12 0.08
Matches are distributed among these distances:
169 31 0.12
170 26 0.10
171 56 0.22
172 14 0.05
173 90 0.35
174 39 0.15
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.22
Consensus pattern (169 bp):
CAGGATCGACAGCACGCAGGGGGGACCGGGCGATCCCTGGCTTGCGCATTCTGCCTCTTCGAGCA
AGCTGAGCGCCCGCACGCTATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAGTCTAAGC
ACCAGACCAGACCAAGGGTTACGGTAGTAGGACCAGTAG
Found at i:32477098 original size:26 final size:26
Alignment explanation
Indices: 32477068--32477120 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
32477058 GTTGACTTAG
32477068 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
32477094 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
32477120 G
1 G
32477121 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:32477314 original size:355 final size:345
Alignment explanation
Indices: 32476793--32477437 Score: 776
Period size: 343 Copynumber: 1.8 Consensus size: 345
32476783 CCAGTAGCAG
* * ** * *
32476793 GATCGACAGCATGCAGGGGGGACCGGGTCGATCCCTGGCTTGCGTATTCTGCCTCTTCGACCGCA
1 GATCGACAGCACGCAGGGGGGACCGGGCCGATCCCCAGCTTGCGTATTCTACCTCTCCGACCG-A
** * * *
32476858 AGCTGAGTGCCCGCAAGCTAGTTTCATGGGTTGGCTTAGGCATACAGAGCTCATTCCATGTCTAA
65 AGCTGAGCACCCACAAGCCAGTTTCATGGGTTGGCTTAGCCATACAGAGCTCATTCCATGTCTAA
* * * * *
32476923 GCCCCAGCCGGGCCGAGGGTTGTGGTAGTAGGACCGGTAGCAGGATCGGCAGCACGCAGAGGGGG
130 GCCCCAGCCGGACCAAAGGTTGTGGCAGCAGGACCGGTAGC---A----C-G--CG--GAGGGGG
* * * *
32476988 ATCGGG-CTGATCC-CTGACTTGCGCATTATGCCTCTTCAGCCAGCTGAGCACCCGCACGCTCCT
183 ACCGGGCCT-ATCCTC-GACTTGCGCATTATGCCTATTCAGCCAGCTCAGCACCCACACGCTCCT
*
32477051 TTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGT
246 TTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAGCATACGGAGTTCATTCCCAGT
32477116 CTAAGATCAGACCGGACCGAGGGTTGCGGCAACAA
311 CTAAGATCAGACCGGACCGAGGGTTGCGGCAACAA
32477151 GATCGACAGCACGCAGGGGGGACCGGGCCGATCCCCAGCTTGCGTATTCTACCTCTCCGACCG-A
1 GATCGACAGCACGCAGGGGGGACCGGGCCGATCCCCAGCTTGCGTATTCTACCTCTCCGACCGAA
* * * ** ** *
32477215 -CTGAGCACCCACACGCCCGTTTCGTTTGTTGGCTTAGCCATAGGGAGTTCATTCCATGTCTAAG
66 GCTGAGCACCCACAAGCCAGTTTCATGGGTTGGCTTAGCCATACAGAGCTCATTCCATGTCTAAG
* * *
32477279 CCCCAGCCGGATCAAAGGTTGTGGCAGCGGGACCGGTAGCACGCGTAGGGGGACCGGGCCTATCC
131 CCCCAGCCGGACCAAAGGTTGTGGCAGCAGGACCGGTAGCACGCGGAGGGGGACCGGGCCTATCC
* * * * *
32477344 TCGGCTTGCGCATTATGCCTATTCGGCCGGCTCAGCGCCCACACGCTCGTTTCATGGGTTGACTT
196 TCGACTTGCGCATTATGCCTATTCAGCCAGCTCAGCACCCACACGCTCCTTTCATGGGTTGACTT
* *
32477409 ATGCATACGGAGTTCATTCCCAATCTAAG
261 AGGCATACGGAGTTCATCCCCAATCTAAG
32477438 ATCAGACCAG
Statistics
Matches: 246, Mismatches: 39, Indels: 19
0.81 0.13 0.06
Matches are distributed among these distances:
343 96 0.39
344 3 0.01
345 2 0.01
347 1 0.00
348 1 0.00
352 1 0.00
355 84 0.34
356 1 0.00
358 57 0.23
ACGTcount: A:0.20, C:0.29, G:0.29, T:0.22
Consensus pattern (345 bp):
GATCGACAGCACGCAGGGGGGACCGGGCCGATCCCCAGCTTGCGTATTCTACCTCTCCGACCGAA
GCTGAGCACCCACAAGCCAGTTTCATGGGTTGGCTTAGCCATACAGAGCTCATTCCATGTCTAAG
CCCCAGCCGGACCAAAGGTTGTGGCAGCAGGACCGGTAGCACGCGGAGGGGGACCGGGCCTATCC
TCGACTTGCGCATTATGCCTATTCAGCCAGCTCAGCACCCACACGCTCCTTTCATGGGTTGACTT
AGGCATACGGAGTTCATCCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGG
ACCGAGGGTTGCGGCAACAA
Found at i:32477560 original size:158 final size:156
Alignment explanation
Indices: 32477093--32477599 Score: 488
Period size: 158 Copynumber: 3.2 Consensus size: 156
32477083 CCCCAGTCTA
* * *
32477093 AGCATACGGAGTTCATTCCCA-GTCTAAGATCAGACCGGAC-CGAGGGTTGCGGCAACAAGATCG
1 AGCATACGGAGTTCATT-CCATGTCTAAGATCAGACCGGACAAG-GGGTTGCGGCAGCAGGATCG
* * * * * *
32477156 ACAGCACGCAGGGGGGACCGGGCCGATCCCCAGCTTGCGTATTCTACCTCTCCGACCGACTGAGC
64 ACAGCACGCAGAGGGGACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCG-CTGAGC
* * **
32477221 ACCCACACGCCCGTTTCGTTTGTTGGCTT
128 GCCCACACGCTCGTTTCGTGGGTTGGCTT
* ** * * * *
32477250 AGCCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCGGATCAA-AGGTTGTGGCAGCGGGACC
1 AG-CATACGGAGTTCATTCCATGTCTAAG-ATCAGACCGGA-CAAGGGGTTGCGGCAGCAGGATC
** * * * *
32477313 GGTAGCACGC-GTAGGGGGACCGGGCCT-ATCCTCGGCTTGCGCATTATGCCTATTCGGCCGGCT
63 GACAGCACGCAG-A-GGGGACCGGG-CTGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCC-GCT
* * *
32477376 CAGCGCCCACACGCTCGTTTCATGGGTTGACTT
124 GAGCGCCCACACGCTCGTTTCGTGGGTTGGCTT
* *
32477409 ATGCATACGGAGTTCATTCCCA-ATCTAAGATCAGACCAGACAAGGGGTTGCGGCAGCAGGATCG
1 A-GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCGGACAAGGGGTTGCGGCAGCAGGATCG
* * * * * *
32477473 ACAGCATGCAGAGGGGTCCAGGCTGATCCCCGGCTTGTGCATTCTGCCTCTCCGGCTTGTTGAGC
64 ACAGCACGCAGAGGGGACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGGC-CGCTGAGC
**
32477538 GCCTGCACGCTCGTTTCGTGGGTTGGCTT
128 GCCCACACGCTCGTTTCGTGGGTTGGCTT
32477567 AAGCATACGGAGTTCATTCCATGTCTAAGATCA
1 -AGCATACGGAGTTCATTCCATGTCTAAGATCA
32477600 CGGAGTTCAT
Statistics
Matches: 276, Mismatches: 56, Indels: 35
0.75 0.15 0.10
Matches are distributed among these distances:
157 11 0.04
158 143 0.52
159 115 0.42
160 7 0.03
ACGTcount: A:0.20, C:0.29, G:0.29, T:0.22
Consensus pattern (156 bp):
AGCATACGGAGTTCATTCCATGTCTAAGATCAGACCGGACAAGGGGTTGCGGCAGCAGGATCGAC
AGCACGCAGAGGGGACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGCTGAGCGCC
CACACGCTCGTTTCGTGGGTTGGCTT
Found at i:32477602 original size:26 final size:26
Alignment explanation
Indices: 32477573--32477623 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
32477563 GCTTAAGCAT
32477573 ACGGAGTTCATTCC-ATGTCTAAGATC
1 ACGGAGTTCATTCCTA-GTCTAAGATC
32477599 ACGGAGTTCATTCCTAGTCTAAGAT
1 ACGGAGTTCATTCCTAGTCTAAGAT
32477624 TTTGAGACAC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (26 bp):
ACGGAGTTCATTCCTAGTCTAAGATC
Found at i:32478477 original size:26 final size:26
Alignment explanation
Indices: 32478447--32478499 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
32478437 GTTGGCTTAG
*
32478447 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
32478473 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
32478499 G
1 G
32478500 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:32479098 original size:892 final size:877
Alignment explanation
Indices: 32477340--32479206 Score: 2610
Period size: 892 Copynumber: 2.1 Consensus size: 877
32477330 GACCGGGCCT
* ** * * * *
32477340 ATCCTCGGCTTGCGCATTATGCCTAT-TCGGCCGGCTCAGCGCCCACACGCTCGTTTCATGGGTT
1 ATCCCCGGCTTGCGCATCCTGCCTCTCT-GGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTT
* * * *
32477404 GACTTATGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACAAGGGGTTGCGGCAGCAGG
65 GACTTAGGCATACAGAGTTCATTCCCAATCTAAGATCAAACCAGACAAGGGGTTGCGGCAGCAGA
* * *
32477469 ATCGACAGCATGCAGAGGGGTCCAGGCTGATCCCCGGCTTGTGCATTCTGCCTCTCCGGCTTGTT
130 ATCGACAGCATGCAGAGGGGTCCAGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCTCGCT
* ** *
32477534 GAGCGCCTGCACGCTCGTTTCGTGGGTTGGCTTAAGCATACGGAGTTCATTCCATGTCTAAGATC
195 GAGCACCCACACGCTCGTTTCATGGGTTGGCTTAAGCATACGGAGTTCATTCCATGTCTAAGATC
* * * *
32477599 ACGGAGTTCATTCCTAGTCTAAGATTTTGAGACACGGTACACATGTTGGGCTTGGGCATGTGCTG
260 ACAGAGTTCATTCCCAGTCTAAGATTTTGAGACACGGTACACATGCTGGGCTTGAGCATGTGCTG
*
32477664 GTGCCGCATTTTTTTCGCCCAGGGCACCATCGCCAGATCATCGCCGGAGAGCCTAACCGATGTTA
325 GTGCCGCATTTTTTTCGCCCAGGGCACCATCGCCAGATCATCGCCGGAGAGCCTAACCGATGTCA
* *
32477729 TTGGGGGTTCTGGCGATTGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGCGTGCTGGTAC
390 TTGGGGGTTCCGACGATTGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGCGTGCTGGTAC
32477794 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
455 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
*
32477859 TTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAGTGTCTGAAATGGGGACACTTTTTTCAAA
520 TTTGAGATTTTATAGGTTTGCTGCCAATAGCCATTAGTGTCTGAAATGGGGACACTTTTTTCAAA
*
32477924 CAGTCACAAAATCTTCTCCACTCCAAGTTTTTGGCTGAAATTTTTTATGCATGCCAAAAAAAATA
585 CAGTCACAAAATCTTCTCCACTCCAAGTTTTTAGCTGAAATTTTTTATGCATGCCAAAAAAAATA
* *
32477989 CGAGGATCACCTCTACCAAATTTGGGGACAAAACTCTTTCTAAAAAATTTTAAAAAATCTCGAAC
650 CAAGGATCACCTCTACCAAATTTGGGGACAAAACTATTTCTAAAAAATTTTAAAAAATCTCGAAC
* * *
32478054 CACAAAAATTTTCGAAAATTATGAAAAATAGAAAACTGGTCGTCTTGCCACGAAACTTCACATGA
715 CACAAAAATTTTCAAAAATCATGAAAAATAGAAAACTGGTCATCTTGCCACGAAACTTCACATGA
* *
32478119 AGGCTTAGGAGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTACCATGGCAGAAATATG
780 AGGCTTAGGAGACCATTGTATCAATTTACAAGCCATAAAAATGGCATTACCACGGCAGAAATATG
*
32478184 AAGATGTGCTTGAACCCACCTACCACCCATTCG
845 AAGATGTGCTTGAACCCACCTACCACCCATTCA
* *
32478217 ATCCCCGGCTTGCGCATCCTGCCTCTCTGGTCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTG
1 ATCCCCGGCTTGCGCATCCTGCCTCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTG
* * ** * *
32478282 GCCTAGGCATACAGAGTTCATTCCCAATCTAAGATCAAACCAGA-GTGAGGGTTGTGGCAGCTGA
66 ACTTAGGCATACAGAGTTCATTCCCAATCTAAGATCAAACCAGACAAG-GGGTTGCGGCAGCAGA
* * * *
32478346 ATCGACAGCATGCAGAGGGGTATCGAGTC-GGTCCCTGGCTTGCGCATTCTGCCTCTCCGGC-CG
130 ATCGACAGCATGCAGAGGGG--TCCAGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCTCG
*
32478409 ACTGAGCACCCACACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
193 -CTGAGCACCCACACGCTCGTTTCATGGGTTGGCTTAAGCATACGGAGTTCATTCCATGTCTAAG
* * *
32478474 CAT-ATAGAGTTCATTCCCAGTCTAAGATTTTGAGCCACGGTGCACATGCTGGGCTTGAGCATGT
257 -ATCACAGAGTTCATTCCCAGTCTAAGATTTTGAGACACGGTACACATGCTGGGCTTGAGCATGT
* *
32478538 GCTGGTGCGGCATTTTTTTC-CCCCGGGCACCATCGCCGGAGCATCACTAGAGCATTGCCGGAGA
321 GCTGGTGCCGCATTTTTTTCGCCCAGGGCACCATCGCC--AG-ATCA-T----C---GCCGGAGA
*
32478602 GCCTAACCAGCA-G-CATTGGGGGTTCCGACGATT-GGGGGTCGGGGGGTGTGCGCACATGATGC
375 GCCTAACC-G-ATGTCATTGGGGGTTCCGACGATTGGGGGGCCGGGGGGTGTGCGCACATGATG-
* *
32478664 TTGTGATG-GATGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAAC
437 -TGCGATGCG-TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
32478728 TCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAATAGCCATTAAAGTGTCTG
500 TCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAATAGCCATT--AGTGTCTG
* * * * *
32478793 AAATGGGGACACTTTTTTCAAACGGTCACAAAATCTTCTCCACTTCGATTTTTTAGCTGAATTTT
563 AAATGGGGACACTTTTTTCAAACAGTCACAAAATCTTCTCCACTCCAAGTTTTTAGCTGAAATTT
* * *
32478858 TTTTTGCATGCCAACAAAAATACAAGGATCACCTTTACCAAATTTGGGGACAAAACTATTTCTAA
628 TTTATGCATGCCAAAAAAAATACAAGGATCACCTCTACCAAATTTGGGGACAAAACTATTTCT-A
* * ** *
32478923 AAAAATTTTGAAAAATCAT-GAATCGTAAAAAGTTTT-AAAAATCGTGAAAAATAGAAAA-TGGG
692 AAAAATTTTAAAAAATC-TCGAACCACAAAAA-TTTTCAAAAATCATGAAAAATAGAAAACT-GG
*
32478985 TCATCTTGCCACGAAACTTCACATGAAGGCTTAGGGGACCATTGTATCAATTTACAAGCCATAAA
754 TCATCTTGCCACGAAACTTCACATGAAGGCTTAGGAGACCATTGTATCAATTTACAAGCCATAAA
** * * *
32479050 AATGGCATTGGCACGGC-GAAAATATGAAGATGTGGTTGAACCCACCTACCACTCGTTCA
819 AATGGCATTACCACGGCAG-AAATATGAAGATGTGCTTGAACCCACCTACCACCCATTCA
* * * * * * *
32479109 ATCCCCGGCTTGTGTATCCTGCCTCTCTGGTCGGCTGAGCGTCTGCACGTTTGTTTCATGGCTTG
1 ATCCCCGGCTTGCGCATCCTGCCTCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTG
* * *
32479174 ACTTAGGCATACAGAGGTCATCCCCAGTCTAAG
66 ACTTAGGCATACAGAGTTCATTCCCAATCTAAG
32479207 CATACGGAGT
Statistics
Matches: 872, Mismatches: 89, Indels: 43
0.87 0.09 0.04
Matches are distributed among these distances:
876 1 0.00
877 143 0.16
878 161 0.18
879 9 0.01
880 4 0.00
881 1 0.00
885 1 0.00
887 27 0.03
888 34 0.04
889 115 0.13
890 1 0.00
891 127 0.15
892 243 0.28
893 5 0.01
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.27
Consensus pattern (877 bp):
ATCCCCGGCTTGCGCATCCTGCCTCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTG
ACTTAGGCATACAGAGTTCATTCCCAATCTAAGATCAAACCAGACAAGGGGTTGCGGCAGCAGAA
TCGACAGCATGCAGAGGGGTCCAGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCTCGCTG
AGCACCCACACGCTCGTTTCATGGGTTGGCTTAAGCATACGGAGTTCATTCCATGTCTAAGATCA
CAGAGTTCATTCCCAGTCTAAGATTTTGAGACACGGTACACATGCTGGGCTTGAGCATGTGCTGG
TGCCGCATTTTTTTCGCCCAGGGCACCATCGCCAGATCATCGCCGGAGAGCCTAACCGATGTCAT
TGGGGGTTCCGACGATTGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGCGTGCTGGTACT
TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
TTGAGATTTTATAGGTTTGCTGCCAATAGCCATTAGTGTCTGAAATGGGGACACTTTTTTCAAAC
AGTCACAAAATCTTCTCCACTCCAAGTTTTTAGCTGAAATTTTTTATGCATGCCAAAAAAAATAC
AAGGATCACCTCTACCAAATTTGGGGACAAAACTATTTCTAAAAAATTTTAAAAAATCTCGAACC
ACAAAAATTTTCAAAAATCATGAAAAATAGAAAACTGGTCATCTTGCCACGAAACTTCACATGAA
GGCTTAGGAGACCATTGTATCAATTTACAAGCCATAAAAATGGCATTACCACGGCAGAAATATGA
AGATGTGCTTGAACCCACCTACCACCCATTCA
Found at i:32479209 original size:26 final size:26
Alignment explanation
Indices: 32479180--32479232 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
32479170 CTTGACTTAG
32479180 GCATACAGAGGTCATCCCCAGTCTAA
1 GCATACAGAGGTCATCCCCAGTCTAA
* * *
32479206 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGGTCATCCCCAGTCTAA
32479232 G
1 G
32479233 ATCAAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACAGAGGTCATCCCCAGTCTAA
Found at i:32479392 original size:26 final size:26
Alignment explanation
Indices: 32479363--32479415 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
32479353 GTTGACTTAG
32479363 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
32479389 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
32479415 G
1 G
32479416 ATTAGTCCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:32479435 original size:183 final size:185
Alignment explanation
Indices: 32479162--32479574 Score: 514
Period size: 183 Copynumber: 2.2 Consensus size: 185
32479152 TGCACGTTTG
* * * *
32479162 TTTCATGGCTTGACTTAGGCATACAGAGGTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAG
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* ** * * *
32479227 TCTAAGATCAAACCAGACCGAGGGTTGTGGTAGTAGGATCGACAGCACG-TAG-GGGTATCGAAC
66 TCTAAGATCAAACCAAACCGAGGGTTGCAGCAGTAGCATCGACAGCACGCAAGAGGG-ATCGAAC
* * * *
32479290 CGATCTCTG-GCTTACGCATTCTGCCTCTTCGACCGGCTAAGCG-CCCGCATGCCTA
130 CGATCTC-GAGCTTACGCATTCTGCCTCTCCAACCGGCTAAGCGCCCCGCACGCCCA
32479345 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAG
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* ** * **
32479410 TCTAAGATTAGTCCAAACCGAGGGTTGCAGCAGTAGCATTGGTAGCACGCAAGAGGGATCGAACC
66 TCTAAGATCAAACCAAACCGAGGGTTGCAGCAGTAGCATCGACAGCACGCAAGAGGGATCGAACC
** * * *
32479475 GATCTCGAGCTTGTGCATTCTGCCTCTCCAATCGGCTGAGCGCCCCGCACGCCCG
131 GATCTCGAGCTTACGCATTCTGCCTCTCCAACCGGCTAAGCGCCCCGCACGCCCA
* *
32479530 TTTCGTGGGTTGGCTTAGGCATA-GGAGTTCAT-TCCATGTCTAAGC
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGC
32479575 CCCAGCCGGA
Statistics
Matches: 198, Mismatches: 27, Indels: 9
0.85 0.12 0.04
Matches are distributed among these distances:
183 103 0.52
184 61 0.31
185 34 0.17
ACGTcount: A:0.22, C:0.27, G:0.26, T:0.25
Consensus pattern (185 bp):
TTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAG
TCTAAGATCAAACCAAACCGAGGGTTGCAGCAGTAGCATCGACAGCACGCAAGAGGGATCGAACC
GATCTCGAGCTTACGCATTCTGCCTCTCCAACCGGCTAAGCGCCCCGCACGCCCA
Found at i:32480499 original size:26 final size:26
Alignment explanation
Indices: 32480462--32480514 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
32480452 GTTGACTTAG
32480462 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
32480488 GCATAC-GAAGTTCATTCCTAGTCTAA
1 GCATACAG-AGTTCATCCCCAGTCTAA
32480514 G
1 G
32480515 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:32481730 original size:26 final size:26
Alignment explanation
Indices: 32481701--32481750 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
32481691 GCTCAGGCAT
*
32481701 ACGGAGTTTATTCC-ATGTCTAAGATC
1 ACGGAGTTCATTCCTA-GTCTAAGATC
32481727 ACGGAGTTCATTCCTAGTCTAAGA
1 ACGGAGTTCATTCCTAGTCTAAGA
32481751 GTTTGAGACA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.32
Consensus pattern (26 bp):
ACGGAGTTCATTCCTAGTCTAAGATC
Found at i:32482450 original size:26 final size:26
Alignment explanation
Indices: 32482414--32482466 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
32482404 GGTTGACTTG
*
32482414 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
32482440 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
32482466 G
1 G
32482467 ATCAGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:32482796 original size:26 final size:26
Alignment explanation
Indices: 32482756--32482808 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
32482746 GTTGGCTTAG
*
32482756 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGCTCATTCCCA-GTCTAA
*
32482782 GCATATGGAGCTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
32482808 G
1 G
32482809 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAGTCTAA
Found at i:32483156 original size:26 final size:26
Alignment explanation
Indices: 32483120--32483173 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
32483110 TGGGTTGACT
32483120 TAGGCATACGAAGTTCATCCCCAGTC
1 TAGGCATACGAAGTTCATCCCCAGTC
*
32483146 TAGGCATACGAAGTTCATTCCCAGTC
1 TAGGCATACGAAGTTCATCCCCAGTC
32483172 TA
1 TA
32483174 AGATCAGACC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
TAGGCATACGAAGTTCATCCCCAGTC
Found at i:32483451 original size:159 final size:158
Alignment explanation
Indices: 32483243--32483967 Score: 590
Period size: 159 Copynumber: 4.6 Consensus size: 158
32483233 CTGATCCTCA
* * * *
32483243 GCTTGCACATTCTGCCTCTTCAG-TCGGTTGAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAG
1 GCTTGCGCATTATGCCTCTTCAGCT-GGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAG
* * * * * *
32483307 GCATAGGGAGTTCATTGCATGTCTAAGCCCCAG-TCGGACCGAAGGTTGTGGCAGCGA-GACCGA
65 GCATACGGAGTTCATTCCATGTCTAAG-ACCAGACCAGACCGAGGGTTGTGGCAGCGAGGACCGA
* * *
32483370 CAGCACGCAGAGAGGGATCGGGTCGATCCCAG
129 CAGCACGCAG-G-GGGATCGAGCCGATCCCTG
* * * * * * * *
32483402 GCTTGTGCATTATGCCTCTTCGGGTAGCTCAGGGCCCGCACGCTCATTTCGTGGGTTGACTTATG
1 GCTTGCGCATTATGCCTCTTCAGCTGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGG
* * * * *
32483467 CATACGGAGTTCATTCCCA-GTTTAAGATCAGACCAGACCGAGGGTTGTGGTAG-TAGGATCGAC
66 CATACGGAGTTCATT-CCATGTCTAAGACCAGACCAGACCGAGGGTTGTGGCAGCGAGGACCGAC
* * **
32483530 AGCACGCAGGGGGGTCCGAACCGATCTTTG
130 AGCACGCAGGGGGAT-CGAGCCGATCCCTG
* * * * * * * *
32483560 GCTTGCACATTCTGCCTCTCCAGCTGACTGAGTGCCCCGTACACAT-GTTTCGTGGGTTGGCTTA
1 GCTTGCGCATTATGCCTCTTCAGCTGGCTGAGCG-CCCGCACGC-TCATTTCGTGGGTTGGCTTA
* * * * * *
32483624 GGCATAGGGAATTCATTCCATGTCTAAGCCCCA-ACCAGATCGGGGGTTGTGGCAGCG-GGACTG
64 GGCATACGGAGTTCATTCCATGTCTAAG-ACCAGACCAGACCGAGGGTTGTGGCAGCGAGGACCG
* * *
32483687 ACAGCACACAGAGGGGTAGCGGGCCGATCCCTG
128 ACAGCACGCAG-GGGG-ATCGAGCCGATCCCTG
* * * * ** * * *
32483720 GCTTGTGCATTATGCCTCTTTAGCTGGCTTAGCGCCCGCATGCTTGTTTCATTGGTTGACTTAGG
1 GCTTGCGCATTATGCCTCTTCAGCTGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGG
* * * * * ** * *
32483785 CATACGAAGTTCATTCCCA-GTCTAAGATCAGATCGGACTGAGGGTTACGGCAGC-AGGATCGAT
66 CATACGGAGTTCATT-CCATGTCTAAGACCAGACCAGACCGAGGGTTGTGGCAGCGAGGACCGAC
* * * *
32483848 AGCACGTAGGGGGGACCGAGCTGATCCCCG
130 AGCACGCA-GGGGGATCGAGCCGATCCCTG
* * * *
32483878 GCGTGCGCATTCTGCCTCTTC-GACCGGCTGAGCGCCCGCACGCTCTTTTCGTGGGTTGGCTTAG
1 GCTTGCGCATTATGCCTCTTCAG-CTGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAG
32483942 GCATACGGAGTTCATTCCATGTCTAA
65 GCATACGGAGTTCATTCCATGTCTAA
32483968 CCATACGGAG
Statistics
Matches: 437, Mismatches: 110, Indels: 39
0.75 0.19 0.07
Matches are distributed among these distances:
157 8 0.02
158 126 0.29
159 253 0.58
160 50 0.11
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.25
Consensus pattern (158 bp):
GCTTGCGCATTATGCCTCTTCAGCTGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGG
CATACGGAGTTCATTCCATGTCTAAGACCAGACCAGACCGAGGGTTGTGGCAGCGAGGACCGACA
GCACGCAGGGGGATCGAGCCGATCCCTG
Found at i:32483725 original size:318 final size:316
Alignment explanation
Indices: 32483146--32483967 Score: 966
Period size: 318 Copynumber: 2.6 Consensus size: 316
32483136 ATCCCCAGTC
* * * **
32483146 TAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAAACCAAGGGTTCCAATAGTAGGATCG
1 TAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGTAGGATCG
* * * * * *
32483211 ATAGCACGCAGAGGAGAACGGGCTGATCCTCAGCTTGCACATTCTGCCTCTTCAG-TCGGTTGAG
66 ATAGCACGCAGGGGGGACCGAGCTGATCCTCGGCTTGCACATTCTGCCTCTTCAGCT-GGCTGAG
* * *
32483275 CGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTGCATGTCTAAGCCCCAG
130 CGCCCGCACG-CTATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAA
* * * * *
32483340 TCGGACCGAAGGTTGTGGCAGCGAGACCGACAGCACGCAGAGAGGGATCGGGTCGATCCCAGGCT
194 CCAGACCGAAGGTTGTGGCAGCGAGACCGACAGCACACAGAGAGGGAGCGGGCCGATCCCAGGCT
* * * *
32483405 TGTGCATTATGCCTCTTCGGGTAGCTCAGGGCCCGCACGCTCATTTCGTGGGTTGACT
259 TGTGCATTATGCCTCTTCAGCTAGCTCAGCGCCCGCACGCTCATTTCATGGGTTGACT
* * * **
32483463 TATGCATACGGAGTTCATTCCCAGTTTAAGATCAGACCAGACCGAGGGTTGTGGTAGTAGGATCG
1 TAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGTAGGATCG
* * * * * * * * *
32483528 ACAGCACGCAGGGGGGTCCGAACCGATCTTTGGCTTGCACATTCTGCCTCTCCAGCTGACTGAGT
66 ATAGCACGCAGGGGGGACCGAGCTGATCCTCGGCTTGCACATTCTGCCTCTTCAGCTGGCTGAGC
* * * *
32483593 GCCCCGTACACATGTTTCGTGGGTTGGCTTAGGCATAGGGAATTCATTCCATGTCTAAGCCCCAA
131 G-CCCGCACGC-TATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAA
* ** * * *
32483658 CCAGATCGGGGGTTGTGGCAGCGGGACTGACAGCACACAGAG-GGGTAGCGGGCCGATCCCTGGC
194 CCAGACCGAAGGTTGTGGCAGCGAGACCGACAGCACACAGAGAGGG-AGCGGGCCGATCCCAGGC
* * * * ** *
32483722 TTGTGCATTATGCCTCTTTAGCTGGCTTAGCGCCCGCATGCTTGTTTCATTGGTTGACT
258 TTGTGCATTATGCCTCTTCAGCTAGCTCAGCGCCCGCACGCTCATTTCATGGGTTGACT
* * * * *
32483781 TAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTACGGCAGCAGGATCG
1 TAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGTAGGATCG
* * * * *
32483846 ATAGCACGTAGGGGGGACCGAGCTGATCCCCGGCGTGCGCATTCTGCCTCTTC-GACCGGCTGAG
66 ATAGCACGCAGGGGGGACCGAGCTGATCCTCGGCTTGCACATTCTGCCTCTTCAG-CTGGCTGAG
* *
32483910 CGCCCGCACGCTCTTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
130 CGCCCGCACGCT-ATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
32483968 CCATACGGAG
Statistics
Matches: 417, Mismatches: 82, Indels: 12
0.82 0.16 0.02
Matches are distributed among these distances:
316 1 0.00
317 159 0.38
318 257 0.62
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (316 bp):
TAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGTAGGATCG
ATAGCACGCAGGGGGGACCGAGCTGATCCTCGGCTTGCACATTCTGCCTCTTCAGCTGGCTGAGC
GCCCGCACGCTATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACC
AGACCGAAGGTTGTGGCAGCGAGACCGACAGCACACAGAGAGGGAGCGGGCCGATCCCAGGCTTG
TGCATTATGCCTCTTCAGCTAGCTCAGCGCCCGCACGCTCATTTCATGGGTTGACT
Found at i:32483992 original size:26 final size:26
Alignment explanation
Indices: 32483943--32483993 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
32483933 TTGGCTTAGG
*
32483943 CATACGGAGTTCATTCCATGTCTAAC
1 CATACGGAGTTCATTCCATATCTAAC
32483969 CATACGGAGTTCATTCCCA-ATCTAA
1 CATACGGAGTTCATT-CCATATCTAA
32483994 GATCAGATCG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.27, G:0.14, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCATATCTAAC
Found at i:32484345 original size:26 final size:26
Alignment explanation
Indices: 32484309--32484361 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
32484299 GTTGACTTAG
*
32484309 GCATACGAAGTTCATTC-CATGTCTAA
1 GCATACAAAGTTCATTCTCA-GTCTAA
*
32484335 GCATACAAAGTTTATTCTCAGTCTAA
1 GCATACAAAGTTCATTCTCAGTCTAA
32484361 G
1 G
32484362 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.32, C:0.21, G:0.15, T:0.32
Consensus pattern (26 bp):
GCATACAAAGTTCATTCTCAGTCTAA
Found at i:32484370 original size:367 final size:355
Alignment explanation
Indices: 32483840--32484544 Score: 928
Period size: 367 Copynumber: 2.0 Consensus size: 355
32483830 TACGGCAGCA
* * * *
32483840 GGATCGATAGCACGTAGGGGGGACCGAGCTGATCCCCGGCGTGCGCATTCTGCCTCTTCGACCGG
1 GGATCGATAGCACGTAGGGGGGACCGAGCTGATCCCCAGCGTACGCATTATGCCTCTCCGACCGG
* * *
32483905 CTGAGCGCCCGCACGCTCTTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAACC
66 CTGAGCGCCCGCACGCTCTTTTCGTAGGTTGACTTAGGCATACGAAGTTCATTCCATGTCTAACC
** **
32483970 ATACGGAGTTCATTCCCAATCTAAGATCAGATCGGATCGACGGTTATGGCAGCAGGACCAGCAGT
131 ATACAAAGTTCATTCCCAATCTAAGATCAGATCGGATCGACGGTTACAGCAGCAGGACCAGC---
* * * * *
32484035 AGGATCAGCAGCACGCAGGGGGGACCGGACCGATCCTCGACTTGCGCATTCTGCCTCTCCGGCCG
193 A-G--CA-CA-CA-G--GGAGGGACCGGACCGATCCCCAACTTGCGCATTCTACCTCTCCGACCG
* * * **
32484100 AATGAGCGCCCGCACGCTCATTTTGTGGGTTGGCTTAGGCATACGG-AGTTCATTCCATGTCTAA
250 AATGAGCGCCCACAAGCCCATTTCATGGGTTGGCTTAGGCATA-GGTAGTTCATTCCATGTCTAA
*
32484164 GCCCCAACCGGACCGAGGGTTGTGGCAATAGGATCGGTAGTG
314 GCCCCAACCGGACCGACGGTTGTGGCAATAGGATCGGTAGTG
* *
32484206 GGATCGATAGCACGTAGAGGGGGATCGAGCTGATCCCCAGCTTACGCATTATGCCTCTCCGACCG
1 GGATCGATAGCACGTAG-GGGGGACCGAGCTGATCCCCAGCGTACGCATTATGCCTCTCCGACCG
* *
32484271 GCTGAGCGCCTGCACGCTCATTTT-GTATGTTGACTTAGGCATACGAAGTTCATTCCATGTCTAA
65 GCTGAGCGCCCGCACGCTC-TTTTCGTAGGTTGACTTAGGCATACGAAGTTCATTCCATGTCTAA
* * * * * *
32484335 GCATACAAAGTTTATTCTCAGTCTAAGATCAGATCGGATTGAGGGTTACAGCAGCAGGACCAGCA
129 CCATACAAAGTTCATTCCCAATCTAAGATCAGATCGGATCGACGGTTACAGCAGCAGGACCAGCA
* ** *
32484400 GCATACAGGGAGGGACCGGGTCGATCCCCAACTTGCGCATTCTACCTCTCCGACCGACTGAGCGC
194 GCACACAGGGAGGGACCGGACCGATCCCCAACTTGCGCATTCTACCTCTCCGACCGAATGAGCGC
* *
32484465 CCATAAGCCCATTTCATGGGTTGGCTTAGGCATAGGTAGTTCATTCCATGTCTAAGCCCCAATCG
259 CCACAAGCCCATTTCATGGGTTGGCTTAGGCATAGGTAGTTCATTCCATGTCTAAGCCCCAACCG
32484530 GACCGACGGTTGTGG
324 GACCGACGGTTGTGG
32484545 TAGCGGGACC
Statistics
Matches: 298, Mismatches: 38, Indels: 16
0.85 0.11 0.05
Matches are distributed among these distances:
355 2 0.01
356 118 0.40
358 1 0.00
359 2 0.01
360 1 0.00
361 2 0.01
363 1 0.00
364 1 0.00
366 17 0.06
367 149 0.50
368 4 0.01
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.23
Consensus pattern (355 bp):
GGATCGATAGCACGTAGGGGGGACCGAGCTGATCCCCAGCGTACGCATTATGCCTCTCCGACCGG
CTGAGCGCCCGCACGCTCTTTTCGTAGGTTGACTTAGGCATACGAAGTTCATTCCATGTCTAACC
ATACAAAGTTCATTCCCAATCTAAGATCAGATCGGATCGACGGTTACAGCAGCAGGACCAGCAGC
ACACAGGGAGGGACCGGACCGATCCCCAACTTGCGCATTCTACCTCTCCGACCGAATGAGCGCCC
ACAAGCCCATTTCATGGGTTGGCTTAGGCATAGGTAGTTCATTCCATGTCTAAGCCCCAACCGGA
CCGACGGTTGTGGCAATAGGATCGGTAGTG
Found at i:32485757 original size:26 final size:26
Alignment explanation
Indices: 32485720--32485772 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
32485710 GTTAACTTAG
32485720 GCATACAAAGTTCATCCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
* *
32485746 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
32485772 G
1 G
32485773 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACAAAGTTCATCCCCAGTCTAA
Found at i:32486409 original size:26 final size:26
Alignment explanation
Indices: 32486379--32486431 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
32486369 GTTGACTTAG
32486379 GCATAC-GAAGTTCA-TCCCTAGTCTAA
1 GCATACAG-AGTTCATTCCC-AGTCTAA
32486405 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
32486431 G
1 G
32486432 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:32487246 original size:159 final size:159
Alignment explanation
Indices: 32486988--32487447 Score: 423
Period size: 159 Copynumber: 2.9 Consensus size: 159
32486978 TCGGATCGAG
* * * * * * * *
32486988 GGTTGCAGCAGCAGGATCAACAGCACGTAG-GGGGGACCGGGTTGATCCCTGGCTTACGCATTTT
1 GGTTGCGGCAACAGGACCGACAGCACGTAGAGGAGGACCGGGTTGATCCCCGGCTTGCGCATTAT
* * * ** *
32487052 GCCTCTCCAACCAGCTGAGCGCTTGCACG-TCCGTTTTATGGGTTGGCTTAGGCATAGGGAGTTC
66 GCCTCTCCGACCGGCT-AGTGCCCGCACGCT-CGTTTTATGGGTTGGCTTAGGCATACGGAGTTC
* * * *
32487116 ATTCCTTGTCTAAGCCCCAG-CCGGATCAAC
129 ATTCCATGTCTAAGCACCAGACCGAACCAAC
* * ** * *
32487146 GGTTGTGGCAACGGGACCGGTAGCACGTAGAGGAGGACCTGGTTGATCCCCAGCTTGCGCATTAT
1 GGTTGCGGCAACAGGACCGACAGCACGTAGAGGAGGACCGGGTTGATCCCCGGCTTGCGCATTAT
* * *
32487211 GCCTCTCCGGCCGGCTCAGTGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCA
66 GCCTCTCCGACCGGCT-AGTGCCCGCACGCTCGTTTTATGGGTTGGCTTAGGCATACGGAGTTCA
* * * *
32487276 TTCCCA-GTCTAAG-ATCAGATCGAACCGAG
130 TT-CCATGTCTAAGCACCAGACCGAACCAAC
* * * * *
32487305 GGTTGCGGTAGCAGGATCGACAGCA-GT--AGGAGGGATCGGGTTGATCCCCGGCTTGCGCATTC
1 GGTTGCGGCAACAGGACCGACAGCACGTAGAGGA-GGACCGGGTTGATCCCCGGCTTGCGCATTA
* * * * * *
32487367 TGTCTTTCTGATCGGCTATGTGCCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTC
65 TGCCTCTCCGACCGGCTA-GTGCCCGCACGCTCGTTTTATGGGTTGGCTTAGGCATACGGAGTTC
*
32487432 ATTCCATGTATAAGCA
129 ATTCCATGTCTAAGCA
32487448 TATGGAGTTC
Statistics
Matches: 241, Mismatches: 53, Indels: 16
0.78 0.17 0.05
Matches are distributed among these distances:
156 8 0.03
157 89 0.37
158 28 0.12
159 113 0.47
160 3 0.01
ACGTcount: A:0.18, C:0.26, G:0.30, T:0.25
Consensus pattern (159 bp):
GGTTGCGGCAACAGGACCGACAGCACGTAGAGGAGGACCGGGTTGATCCCCGGCTTGCGCATTAT
GCCTCTCCGACCGGCTAGTGCCCGCACGCTCGTTTTATGGGTTGGCTTAGGCATACGGAGTTCAT
TCCATGTCTAAGCACCAGACCGAACCAAC
Found at i:32488355 original size:26 final size:26
Alignment explanation
Indices: 32488325--32488375 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
32488315 TGGCTTAGGA
*
32488325 ATACGGAGTTCATT-CCATGTCTAAGC
1 ATACGGAATTCATTCCCA-GTCTAAGC
32488351 ATACGGAATTCATTCCCAGTCTAAG
1 ATACGGAATTCATTCCCAGTCTAAG
32488376 ATCGAACCGG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (26 bp):
ATACGGAATTCATTCCCAGTCTAAGC
Found at i:32489551 original size:26 final size:26
Alignment explanation
Indices: 32489507--32489559 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
32489497 TACGTGCTAT
32489507 CTTAGACTGGCAATAAACT-TCGTATG
1 CTTAGACTGGCAATAAACTCT-GTATG
*
32489533 CTTAGACTGGGC-ATGAACTCTGTATG
1 CTTAGACT-GGCAATAAACTCTGTATG
32489559 C
1 C
32489560 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGCAATAAACTCTGTATG
Found at i:32489974 original size:158 final size:159
Alignment explanation
Indices: 32489717--32490063 Score: 419
Period size: 158 Copynumber: 2.2 Consensus size: 159
32489707 CTGACTAGGG
*
32489717 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTCCGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCTTAAGCCAACCCACGAAACGAGCGTCCGGGCGCTCAG
* * * * **
32489781 CCAGTCGGAGAGGCAGAATGTGTAAGCCAAGGATCGACCCGGTCCCCC-CTACGTGCTGTCAATC
65 CCAGCCGAAGAGGCAGAATGCGCAAGCCAAGGATCGACCCGGTCCCCCTCTACGTGCTACCAATC
**
32489845 CTGCTATCGCAACCCTCAGTCCGATCCAAT
130 CCACTATCGCAACCCTCAGTCCGATCCAAT
* * * * *
32489875 CTTAGACTGGGAATGAACTCCGTATGCTTCAGTCAACCCACGAAAGGAGCGTGCGGGCGCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCTTAAGCCAACCCACGAAACGAGCGTCCGGGCGCTCAGC
* * * * * * *
32489940 CGGCCGAATAGGCATAATGCGCAAGTCAGGGATCGGCCCGGTCCCCCTCTACGTGCTACCAGTCC
66 CAGCCGAAGAGGCAGAATGCGCAAGCCAAGGATCGACCCGGTCCCCCTCTACGTGCTACCAATCC
* ** * **
32490005 CACTGTCGCAACCCTTGGTCCGGTCTGAT
131 CACTATCGCAACCCTCAGTCCGATCCAAT
*
32490034 CTTAGACTGGGAATGAACTCTGTATGCTTA
1 CTTAGACTGGGAATGAACTCCGTATGCTTA
32490064 GACTAGGGAT
Statistics
Matches: 158, Mismatches: 29, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
157 1 0.01
158 94 0.59
159 63 0.40
ACGTcount: A:0.23, C:0.31, G:0.26, T:0.20
Consensus pattern (159 bp):
CTTAGACTGGGAATGAACTCCGTATGCTTAAGCCAACCCACGAAACGAGCGTCCGGGCGCTCAGC
CAGCCGAAGAGGCAGAATGCGCAAGCCAAGGATCGACCCGGTCCCCCTCTACGTGCTACCAATCC
CACTATCGCAACCCTCAGTCCGATCCAAT
Found at i:32490085 original size:26 final size:26
Alignment explanation
Indices: 32490034--32490085 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
32490024 CCGGTCTGAT
**
32490034 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
32490060 CTTAGACTAGGG-ATGAACTCCATATG
1 CTTAGACT-GGGAATGAACTCCATATG
32490086 TCTAAGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:32490158 original size:343 final size:343
Alignment explanation
Indices: 32489716--32490339 Score: 908
Period size: 343 Copynumber: 1.8 Consensus size: 343
32489706 TCTGACTAGG
* * * *
32489716 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTCCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCATCCGGACGCTCAA
* * * * *
32489781 CCAGTCGGAGAGGCAGAATGTGTAAGCCAAGGATCGACCCGGTCCCCCCTACGTGCTGTCAATCC
66 CCAGTCGGAGAGGCAAAATGCGCAAGCCAAGGATCGACCCGATCCCCCCTACGTGCCGTCAATCC
* * *
32489846 TGCTATCGCAACCCTCAGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCTTCAGTCAA
131 TACTATCGCAACCCTCAGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * * * *
32489911 CCCACGAAAGGAGCGTGCGGGCGCTGAGCCGGCCGAATAGGCATAATGCGCAAGTCAGGGATCGG
196 CCCACGAAACGAGCGTGCGAGCGCTGAGCCAGCCGAAGAGGCATAATGCGCAAGCCAGGGATCGA
*
32489976 CCCGGTCCCCCTCTACGTGCTACCAGTCCCACTGTCGCAACCCTTGGTCCGGTCTGATCTTAGAC
261 CCCAGTCCCCCTCTACGTGCTACCAGTCCCACTGTCGCAACCCTTGGTCCGGTCTGATCTTAGAC
32490041 TGGGAATGAACTCTGTAT
326 TGGGAATGAACTCTGTAT
* * * * *
32490059 GCTTAGAC-TAGGGATGAACTCCATATGTCTAAGTCAACCCACGAAACGAGCATGCGGACGCTTA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCATCCGGACGCTCA
* * * * *
32490123 ACCGGTCGGAGAGGCAAAATGCGCAAGTCAAGGATCGGCCCGATCCCCCCTGCGTGCCGTCGATC
65 ACCAGTCGGAGAGGCAAAATGCGCAAGCCAAGGATCGACCCGATCCCCCCTACGTGCCGTCAATC
* * *
32490188 CTACTGTCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
130 CTACTATCGCAACCCTCAGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* *
32490253 ACCCACGAAACGAGCGTGCGAGCGCTGAGCCAGCCGAAGAGGCATAATGTGCAAGCCGGGGATCG
195 ACCCACGAAACGAGCGTGCGAGCGCTGAGCCAGCCGAAGAGGCATAATGCGCAAGCCAGGGATCG
* *
32490318 ACCTAGTCCCCCTCTGCGTGCT
260 ACCCAGTCCCCCTCTACGTGCT
32490340 GACGATCCCG
Statistics
Matches: 244, Mismatches: 36, Indels: 2
0.87 0.13 0.01
Matches are distributed among these distances:
342 1 0.00
343 243 1.00
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.19
Consensus pattern (343 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCATCCGGACGCTCAA
CCAGTCGGAGAGGCAAAATGCGCAAGCCAAGGATCGACCCGATCCCCCCTACGTGCCGTCAATCC
TACTATCGCAACCCTCAGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
CCCACGAAACGAGCGTGCGAGCGCTGAGCCAGCCGAAGAGGCATAATGCGCAAGCCAGGGATCGA
CCCAGTCCCCCTCTACGTGCTACCAGTCCCACTGTCGCAACCCTTGGTCCGGTCTGATCTTAGAC
TGGGAATGAACTCTGTAT
Found at i:32491629 original size:26 final size:26
Alignment explanation
Indices: 32491591--32491643 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32491581 GGCTCAAAAT
*
32491591 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
32491617 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
32491643 C
1 C
32491644 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:32491911 original size:159 final size:159
Alignment explanation
Indices: 32491617--32492119 Score: 511
Period size: 159 Copynumber: 3.2 Consensus size: 159
32491607 ACTCTGTATG
* *
32491617 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAAG-CACTCAG
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCAGGTCACTCAG
* * * * * *
32491681 TCGGTCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCTGATCCC-CTCCCATGTGCTGTCGAT
66 CCGGTCGAAGAGGCAGAATGTGCAAGCCGGGGATCGGCCTGATCCCTCT-CTATGTGCTGCCGAT
*
32491745 CTTGCTGCTGCAACCCTCGGTCCAGTCTGAT
130 CCTGCTGCTGCAACCCTCGGT-CAGTCTGAT
* * * * *
32491776 CTTAGAC-TGGGAATGAACTTCGTATGCATAAGTCAACCCATGAAACAAGCATGC-GGTCACTGA
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCAGGTCACTCA
* * * * * *
32491839 GCCGG-CTGAAGAGGCATAATGTGCAAGCCGGGGATCGGCTTGGTCCCTCTCTACGTGCTACCGG
65 GCCGGTC-GAAGAGGCAGAATGTGCAAGCCGGGGATCGGCCTGATCCCTCTCTATGTGCTGCCGA
* ** * * * * *
32491903 TCCCGCTGCCACATCCCTCGATCGGACTGAGG
129 TCCTGCTGCTGCAACCCTCGGTCAGTCTGA-T
* * * *
32491935 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATGCAGGT-GCTTAG
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCAGGTCACTCAG
* * *
32491999 CTGGTCGAAGAGGCAGAATGCT-CAAGCCGGGGATCGGCCTGAT-CCTCCCTATGTGATGCCGAT
66 CCGGTCGAAGAGGCAGAATG-TGCAAGCCGGGGATCGGCCTGATCCCTCTCTATGTGCTGCCGAT
** * *
32492062 CCTATTGCTGCAACCCTCGGTCTGATCTTAT
130 CCTGCTGCTGCAACCCTCGGTCAG-TCTGAT
*
32492093 CTTAGAC-TGGGAATGAACTCTGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
32492120 TTAGAATGGG
Statistics
Matches: 275, Mismatches: 58, Indels: 23
0.77 0.16 0.06
Matches are distributed among these distances:
157 1 0.00
158 63 0.23
159 203 0.74
160 8 0.03
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.22
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCAGGTCACTCAG
CCGGTCGAAGAGGCAGAATGTGCAAGCCGGGGATCGGCCTGATCCCTCTCTATGTGCTGCCGATC
CTGCTGCTGCAACCCTCGGTCAGTCTGAT
Found at i:32492122 original size:26 final size:26
Alignment explanation
Indices: 32492093--32492145 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
32492083 CTGATCTTAT
* *
32492093 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
*
32492119 CTTAGAATGGGGATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
32492145 C
1 C
32492146 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Found at i:32492489 original size:26 final size:26
Alignment explanation
Indices: 32492451--32492503 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
32492441 TCCATCCGAT
*
32492451 CTTAGACTGGGAATGAACACTGTATG
1 CTTAGACTGGGAATGAACACCGTATG
*
32492477 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACACCGTATG
32492503 C
1 C
32492504 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACCGTATG
Found at i:32493443 original size:80 final size:80
Alignment explanation
Indices: 32493289--32493450 Score: 180
Period size: 80 Copynumber: 2.0 Consensus size: 80
32493279 ACCAAGCCGG
* * * ** * * ** *
32493289 CCGGAGAGGCATAATGCGCAAGTCAGGGATCGGTTCGATCCCTCTCTACGTGCTGCCGGTCCCGT
1 CCGGAGAGGCAGAATGCACAAGTCAGGGATCAGCCCGATCCCTCCCTACATGCTGCCAATCCCGC
32493354 TGCCACAACCATCGA
66 TGCCACAACCATCGA
** * *
32493369 CCGGAGAGGCAGAATGCACAAGTTGGGGATCAGCCCGATCCCTCCCTACATGCTGTCAATCCTGC
1 CCGGAGAGGCAGAATGCACAAGTCAGGGATCAGCCCGATCCCTCCCTACATGCTGCCAATCCCGC
* *
32493434 TGCCGCAACCCTCGA
66 TGCCACAACCATCGA
32493449 CC
1 CC
32493451 CGGTCTAATC
Statistics
Matches: 66, Mismatches: 16, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
80 66 1.00
ACGTcount: A:0.21, C:0.35, G:0.26, T:0.19
Consensus pattern (80 bp):
CCGGAGAGGCAGAATGCACAAGTCAGGGATCAGCCCGATCCCTCCCTACATGCTGCCAATCCCGC
TGCCACAACCATCGA
Found at i:32493560 original size:239 final size:239
Alignment explanation
Indices: 32493136--32493602 Score: 576
Period size: 239 Copynumber: 2.0 Consensus size: 239
32493126 CCGGTTGGAA
** * * * * * *
32493136 AGGCAGAATGCGTAAGCTGGAGATCGGCTCGATCTCGCCCTACGTGCTGTCGATCCTACTGTCGC
1 AGGCAGAATGCACAAGCTGGAGATCAGCCCGATCCCGCCCTACATGCTGTCAATCCTACTGCCGC
** * * * *
32493201 AACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAA
66 AACCCTCGACCCGATCCAATCTTAGACTGGGAATCAACTCCGTATGCATAAGTCAACCCATGAAA
* ** * * *
32493266 CGAGCGTGCAGGCACCAAGCCGGCCGGAGAGGCATAATGCGCAAGTCAGGGATCGGTTCGATCCC
131 CGAGCGTACAGGCACCAAGCCAACCGAAAAGGCATAATGCGCAAGTCAGGGATCGGCTCGATCCC
* ** *
32493331 TCTCTACGTGCTGCCGGTCCCGTTGCCACAACCATCGACCGGAG
196 CCTCTACGTGCTGCCAATCCCGCTGCCACAACCATCGACCGGAG
* * * *
32493375 AGGCAGAATGCACAAGTTGGGGATCAGCCCGATCCCTCCCTACATGCTGTCAATCCTGCTGCCGC
1 AGGCAGAATGCACAAGCTGGAGATCAGCCCGATCCCGCCCTACATGCTGTCAATCCTACTGCCGC
* *
32493440 AACCCTCGACCCGGTCTAATCTTAGACTGGGAATCAACTCCGTATGCATAAGTCAACCCATGAAA
66 AACCCTCGACCCGATCCAATCTTAGACTGGGAATCAACTCCGTATGCATAAGTCAACCCATGAAA
* * ** * *
32493505 CGAGCGTACGGGCGCTGAGCCAACCGAAAAGGCATAATGCGTAAGTC-GAGGATCGGCTCGGTCC
131 CGAGCGTACAGGCACCAAGCCAACCGAAAAGGCATAATGCGCAAGTCAG-GGATCGGCTCGATCC
* *
32493569 CCCTCTGCGTGCTGCCAATCTCGCTGCCACAACC
195 CCCTCTACGTGCTGCCAATCCCGCTGCCACAACC
32493603 CTCAGTTCGG
Statistics
Matches: 189, Mismatches: 38, Indels: 2
0.83 0.17 0.01
Matches are distributed among these distances:
238 1 0.01
239 188 0.99
ACGTcount: A:0.23, C:0.31, G:0.26, T:0.19
Consensus pattern (239 bp):
AGGCAGAATGCACAAGCTGGAGATCAGCCCGATCCCGCCCTACATGCTGTCAATCCTACTGCCGC
AACCCTCGACCCGATCCAATCTTAGACTGGGAATCAACTCCGTATGCATAAGTCAACCCATGAAA
CGAGCGTACAGGCACCAAGCCAACCGAAAAGGCATAATGCGCAAGTCAGGGATCGGCTCGATCCC
CCTCTACGTGCTGCCAATCCCGCTGCCACAACCATCGACCGGAG
Found at i:32495248 original size:26 final size:26
Alignment explanation
Indices: 32495207--32495259 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
32495197 CTGGTCTGAT
*
32495207 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
* *
32495233 CTTAGACAGGGGATGAACTTCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
32495259 C
1 C
32495260 CTAAGTCGAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Found at i:32496424 original size:671 final size:667
Alignment explanation
Indices: 32494732--32496886 Score: 2313
Period size: 671 Copynumber: 3.2 Consensus size: 667
32494722 TCTCCGTATG
* ** * * *
32494732 CTTAGACAAGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGTGTACGGGCGCTCAGT
1 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGT
* * * * * *
32494797 CGACCGGAGAGGCAGAATGTGCAAGCCGAGGATCAGCCTGGTCCCCCCTACGTGCTGTCGATCCT
66 CGACCAGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCT
*
32494862 ACTGTCGCAACCCTCGATCC-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
131 ACTGTCGCAACCCTC-AGCCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * ** *
32494926 CCCGTAAAACGAGCGTGCGGGCGCTGAGCCGGCCGAAGAGGCATAATGCAAAAATCGAGGATTGA
195 CCCATAAAACGAGCGTGCGGGCGCTGAGCCGGCCGAAGAGGCATAATGCGAAAGCCGAGGA-TGG
* * * * *
32494991 CCCGATCACCCTCTTCGTGCTACTGGT-TCGACTGCCACAACCCTCAGTCCGGCTGGGGCTTAGA
259 CCCGGTC-CCCTCTGCGTGCTACCGGTCCCG-CTGCCACAACCCTCAGTTCGGCTGGGGCTTAGA
* * * * * *
32495055 CATGGAATAAACTTCCTATGCCTCAGCCAACCCACGAAACGGGCGTGCGGGCG-TTCAGCAGGCC
322 CATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTT-AGCCGGTC
* *** * * * *
32495119 GGAGAGGCAGAATGC-ACAAGTTAAGGATCGACCCAGTCCCCCCTGCGTGCTACCGATCCTTC-T
386 GGAGAGGCAGAATGCGAAAACCGAA-GATC-AGCCTGTCCCCCCTGCGTGCTATCGATCCTACGT
* * * * *
32495182 ACCGCAGCCATCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAGGGGAT
449 --CGCAACCCTCGGTCCGGCCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGAT
* * * ** * **
32495247 GAACTTCGTATGCCTAAGTCGACCCATGAAACGAACGTATGGTCAATCAGTCGATCGGAGAGGCC
512 GAACTTCATATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAG-C---C-----GGCC
** ** *
32495312 AACCGAAGAGGCATAATTTGCAAATCGAGGATCAGCCC-AGTCCCTCTCTGCATGCTGTCGATCC
568 -A--G-AGAGGCATAATGCGCAAGCCGAGGATCAGCCCGA-TCCCTCTCTGCGTGCTGTCGATCC
* * * * * *
32495376 TG-TAGCCGGTCCTACTACCCCAAGCCTC-AGTCCAGCTGGGG
628 TGCTA-CCGGTCCTACTGCCACAACCCTCGA-TCC-GATTGGT
* * * * *
32495417 CTTAGACATGCAATGAACTCCATATGCCTACGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGT
* *
32495482 CGTCGA-AGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCT
66 CGACCAGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCT
* * * * ** *
32495546 GCT-ACAGCAACCCTCAGTCTGGTGTGATCTTAGACTGGGAATGAACTCTATATGCCTAGGTCAA
131 ACTGTC-GCAACCCTCAGCCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * * * * *
32495610 GCCACAAAACGAGCGTGCAGGCACTGAGCCGGTCGAAGAGGCATAATGCGTAAGCCGGGGATCGG
195 CCCATAAAACGAGCGTGCGGGCGCTGAGCCGGCCGAAGAGGCATAATGCGAAAGCCGAGGAT-GG
* * * **
32495675 CCCGGTCCCCCTCTGCGTGCTACCGGTCCCGCTGCCCCAACCTTCTGTTCGGCTGGGGCTTATCC
259 CCCGGT-CCCCTCTGCGTGCTACCGGTCCCGCTGCCACAACCCTCAGTTCGGCTGGGGCTTAGAC
* ** * * *
32495740 ATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAGGCAAGCGGGTGCTTAACCGGTCAG
323 ATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTTAGCCGGTCGG
* * ** *
32495805 AGAGACAGAATGCGAAAACCGAAGATCAGCTTGGTCCCCTTTACGTGCTATCGATCCTACGTCGC
388 AGAGGCAGAATGCGAAAACCGAAGATCAGCCT-GTCCCCCCTGCGTGCTATCGATCCTACGTCGC
* * *
32495870 AACCCTCAGTCCGGCCTGATCTTAGACTGGGAATGAACTCCCTATGCTTGGACTGGGGATGAACT
452 AACCCTCGGTCCGGCCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACT
* ** * *
32495935 TTATATGCCTAAGTCAACCCAACAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGAGGCGTAATG
517 TCATATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGAGGCATAATG
* * * *
32496000 CGCAAGCCGAGGATTAGCCCGATCCCTCTCTGCGTGCTGTCGATCCCGCTACCAGTCCTGCTGCC
582 CGCAAGCCGAGGATCAGCCCGATCCCTCTCTGCGTGCTGTCGATCCTGCTACCGGTCCTACTGCC
32496065 ACAACCCTCGATCCGATTGGAT
647 ACAACCCTCGATCCGATTGG-T
* ** *
32496087 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCGTGAAATGAGCGTGCGGGCACTCAGT
1 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGT
* * ** ** *
32496152 CGACCAGAGAGGCAGAATGCACAAGCTGGGGATCGGCCCAATCCCTCCCTGTATGCTATCGATCC
66 CGACCAGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCC-CCCTGCGTGCTGTCGATCC
* * *
32496217 TACTGTCGCAACCCTCAGCCTGGTCTAATCTTAGA-TCGGGAATCAACTCCGTATGCATAAGTCA
130 TACTGTCGCAACCCTCAGCCTGGTCTGATCTTAGACT-GGGAATGAACTCCGTATGCCTAAGTCA
* * * ** * *
32496281 ACCCATGAAACGAGCGTACGGGTGCTGAGCCAACCGAAGAGGCGTAATGCGCAAGCCGAGGATGG
194 ACCCATAAAACGAGCGTGCGGGCGCTGAGCCGGCCGAAGAGGCATAATGCGAAAGCCGAGGATGG
* * ** *
32496346 CCCGGTCCCTTTCTGCGTGCTGCCAATCCCGCTGCCACAACCCTCGGTTCGGCTGGGGCTTAGAC
259 CCCGGTCCC-CTCTGCGTGCTACCGGTCCCGCTGCCACAACCCTCAGTTCGGCTGGGGCTTAGAC
* * **
32496411 ATGGAACGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAGCCAATCGG
323 ATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTTAGCCGGTCGG
** * * * * * ** *
32496476 AGAGGCAGAATGCGCAAGTCGGCA-ATCAACCCTGTCCCCCCTGCGTGCTGTTGATCCTGTGCCG
388 AGAGGCAGAATGCG-AAAACCGAAGATC-AGCCTGTCCCCCCTGCGTGCTATCGATCCTACGTCG
* * **
32496540 TAACCCTCGGTCCGATCC-GATCTTAGACTGGGAATGAACTTTGTATGCTTAGACTGGGGATGAA
451 CAACCCTCGGTCCG-GCCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAA
* * * * *
32496604 CTCCATATGCCTAAGTCAACCCATGAAACCAGCATGCGGGCGCTCAGCCGGCCGGAGAGGTATAA
515 CTTCATATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGAGGCATAA
* * * *
32496669 TGCGTAAGCCGAGGATCAGCCCGATCCCCCTCTACGTGCTGTCGATCCTGC-ATCGGTCCTACTG
580 TGCGCAAGCCGAGGATCAGCCCGATCCCTCTCTGCGTGCTGTCGATCCTGCTACCGGTCCTACTG
* * *
32496733 CCACAACCCTCGGTCCGGCTAGGT
645 CCACAACCCTCGATCC-GATTGGT
*
32496757 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGT
1 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGT
* * * ** *
32496822 CGGCCAGAGATGCAGAATACGCAAGCCGGGGATCATCCCGGTCCCCCCTACGTGCTGTCGATCCT
66 CGACCAGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCT
32496887 GTTGCTGGTC
Statistics
Matches: 1223, Mismatches: 225, Indels: 60
0.81 0.15 0.04
Matches are distributed among these distances:
669 20 0.02
670 260 0.21
671 347 0.28
672 126 0.10
673 2 0.00
674 4 0.00
679 1 0.00
682 1 0.00
683 99 0.08
684 293 0.24
685 70 0.06
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (667 bp):
CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGT
CGACCAGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCT
ACTGTCGCAACCCTCAGCCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
CCATAAAACGAGCGTGCGGGCGCTGAGCCGGCCGAAGAGGCATAATGCGAAAGCCGAGGATGGCC
CGGTCCCCTCTGCGTGCTACCGGTCCCGCTGCCACAACCCTCAGTTCGGCTGGGGCTTAGACATG
GAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTTAGCCGGTCGGAGA
GGCAGAATGCGAAAACCGAAGATCAGCCTGTCCCCCCTGCGTGCTATCGATCCTACGTCGCAACC
CTCGGTCCGGCCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTTCAT
ATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGAGGCATAATGCGCA
AGCCGAGGATCAGCCCGATCCCTCTCTGCGTGCTGTCGATCCTGCTACCGGTCCTACTGCCACAA
CCCTCGATCCGATTGGT
Found at i:32496612 original size:26 final size:26
Alignment explanation
Indices: 32496561--32496613 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
32496551 CCGATCCGAT
***
32496561 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
32496587 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
32496613 C
1 C
32496614 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:32496932 original size:170 final size:170
Alignment explanation
Indices: 32496599--32496946 Score: 425
Period size: 170 Copynumber: 2.0 Consensus size: 170
32496589 TAGACTGGGG
* * *
32496599 ATGAACTCCATATGCCTAAGTCAACCCATGAAACCAGCATGCGGGCGCTCAGCCGGCCGGAGAGG
1 ATGAACTCCATATGCCTAAGCCAACCCATGAAACCAGCATGCGGGCACTCAGCCGGCCAGAGAGG
* * * *
32496664 TATAATGCGTAAGCCGAGGATCAGCCCGATCCCCCTCTACGTGCTGTCGATCCTGCATCGGTCCT
66 CAGAATACGCAAGCCGAGGATCAGCCCGATCCCCCTCTACGTGCTGTCGATCCTGCATCGGTCCT
* * *
32496729 ACTGCCACAACCCTCGGTCCGGCTAGGTCTTAGACATG-GA
131 ACTGCCACAACCCTCAGTCCGGCTAGATCTTAGAC-CGAGA
* * * *
32496769 ATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGTCGGCCAGAGATG
1 ATGAACTCCATATGCCTAAGCCAACCCATGAAACCAGCATGCGGGCACTCAGCCGGCCAGAGAGG
* * * *
32496834 CAGAATACGCAAGCCGGGGATCATCCCGGTCCCCC-CTACGTGCTGTCGATCCTG-TTGCTGGTC
66 CAGAATACGCAAGCCGAGGATCAGCCCGATCCCCCTCTACGTGCTGTCGATCCTGCAT-C-GGTC
* ** * *
32496897 CTGCTGCCGTAACCTTCAGTCCGATCT-GATCTTAGACCGAGA
129 CTACTGCCACAACCCTCAGTCCG-GCTAGATCTTAGACCGAGA
32496939 ATGAACTC
1 ATGAACTC
32496947 TGTATGCTTA
Statistics
Matches: 151, Mismatches: 23, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
168 1 0.01
169 21 0.14
170 127 0.84
171 2 0.01
ACGTcount: A:0.23, C:0.32, G:0.25, T:0.20
Consensus pattern (170 bp):
ATGAACTCCATATGCCTAAGCCAACCCATGAAACCAGCATGCGGGCACTCAGCCGGCCAGAGAGG
CAGAATACGCAAGCCGAGGATCAGCCCGATCCCCCTCTACGTGCTGTCGATCCTGCATCGGTCCT
ACTGCCACAACCCTCAGTCCGGCTAGATCTTAGACCGAGA
Found at i:32496956 original size:26 final size:26
Alignment explanation
Indices: 32496927--32496979 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
32496917 CCGATCTGAT
32496927 CTTAGAC-CGAGAATGAACTCTGTATG
1 CTTAGACACG-GAATGAACTCTGTATG
* *
32496953 CTTAGACATGGAATGGACTCTGTATG
1 CTTAGACACGGAATGAACTCTGTATG
32496979 C
1 C
32496980 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACACGGAATGAACTCTGTATG
Found at i:32497457 original size:26 final size:26
Alignment explanation
Indices: 32497428--32497480 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
32497418 CCGGTCTGAT
*
32497428 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
32497454 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
32497480 C
1 C
32497481 CTAAGTCAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:32497766 original size:355 final size:354
Alignment explanation
Indices: 32497250--32497936 Score: 894
Period size: 355 Copynumber: 1.9 Consensus size: 354
32497240 CCGCTGCCGT
* **
32497250 AACCCTCGGTCCGACTGGGGCTCAGACATGGAATGAACTCCCTAAGCCTAAGCCAACCCACGAAA
1 AACCCTCGATCCGACTGGGGCTCAGACATGGAATGAACTCCCTAAGCCTAAGCCAAAACACGAAA
* * * * * *
32497315 TGGGCATACGGGCGCTCAGTCGATTGGAGAGGTAGAATGCGCAAGTCGGGGATCGACCCAGTCCC
66 CGAGCATACGGGCGCTCAGTCGATCGGAGAGGCAGAATGCACAAGCCGGGGATCGACCCAGTCCC
* * * *
32497380 CCCTGCGTGTTGCTGATCCTACTGCCGCAACCCTCGATCCGGTCTGATCTTAGATTGGGAATGAA
131 CCCTGCGTGCTGCCGATCCTACTGCCGCAACCCTCGATCCGGTATGATCTTAGACTGGGAATGAA
* * * * * * *
32497445 CTCTGTATGCTTAGAC-TGGGGATGAACTCTGTATGCCTAAGTCAAGCCATAAAACGAGCGTGTG
196 CTCCGTATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCG
* * * *
32497509 GGCACTCAACC-GATCGGAGAGGCATAATGCGTAAGCCCGGGATCAGCTCGATCCCTCTCTGCGT
260 GGCACTCAACCTG-TCGGAGAGGCA-AATGCGCAAGCCCGGGATCAACCCGATCCCTCTCTGAGT
32497573 GCTGCCGATCTCGCTGTCGGTCCTACTGCCAC
323 GCTGCCGATCTCGCTGTCGGTCCTACTGCCAC
** * * * * *
32497605 AACCCTCGATCCGGTTGGGGCTTAGACATGGAATGAACTTCGTATGCCTAATCCAAAACACGAAA
1 AACCCTCGATCCGACTGGGGCTCAGACATGGAATGAACTCCCTAAGCCTAAGCCAAAACACGAAA
* *
32497670 CGAGCGTGCGGGCGCTCAGTCGATCGGAGAGGCAGAATGCACAAGCCGGGGATCGACCC-GATCC
66 CGAGCATACGGGCGCTCAGTCGATCGGAGAGGCAGAATGCACAAGCCGGGGATCGACCCAG-TCC
* * ** *
32497734 CCCTTGTGTGCTGCCGATCCTGTTGTCGCAACCCTCGATCCGGTATGATCTTAGACTGGGAATGA
130 CCCCTGCGTGCTGCCGATCCTACTGCCGCAACCCTCGATCCGGTATGATCTTAGACTGGGAATGA
* * *
32497799 ACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCTTAAGCCAACCCACGAAATGAGCGTGCG
195 ACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCG
* * * * *
32497864 GGCGCTCAGCCTGTCGGAGAGGCAAATGCGCAAGCCGGGGATCAACCCGGTCCCTTTCTGAGTGC
260 GGCACTCAACCTGTCGGAGAGGCAAATGCGCAAGCCCGGGATCAACCCGATCCCTCTCTGAGTGC
*
32497929 TGTCGATC
325 TGCCGATC
32497937 CTACTACCGC
Statistics
Matches: 282, Mismatches: 47, Indels: 7
0.84 0.14 0.02
Matches are distributed among these distances:
354 42 0.15
355 238 0.84
356 2 0.01
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (354 bp):
AACCCTCGATCCGACTGGGGCTCAGACATGGAATGAACTCCCTAAGCCTAAGCCAAAACACGAAA
CGAGCATACGGGCGCTCAGTCGATCGGAGAGGCAGAATGCACAAGCCGGGGATCGACCCAGTCCC
CCCTGCGTGCTGCCGATCCTACTGCCGCAACCCTCGATCCGGTATGATCTTAGACTGGGAATGAA
CTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGG
GCACTCAACCTGTCGGAGAGGCAAATGCGCAAGCCCGGGATCAACCCGATCCCTCTCTGAGTGCT
GCCGATCTCGCTGTCGGTCCTACTGCCAC
Found at i:32497813 original size:26 final size:26
Alignment explanation
Indices: 32497783--32497838 Score: 96
Period size: 26 Copynumber: 2.2 Consensus size: 26
32497773 CCGGTATGAT
32497783 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
32497809 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
32497835 CTTA
1 CTTA
32497839 AGCCAACCCA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
26 28 0.97
27 1 0.03
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.29
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:32497938 original size:184 final size:184
Alignment explanation
Indices: 32497624--32497993 Score: 503
Period size: 184 Copynumber: 2.0 Consensus size: 184
32497614 TCCGGTTGGG
* *
32497624 GCTTAGACATGGAATGAACTTCGTATGCCTAATCCAAAACACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAAACACGAAACGAGCGTGCGGGCGCTCAG
* * *
32497689 TCGATCGGAGAGGCAGAATGCACAAGCCGGGGATCGACCCGATCCCCCTTGTGTGCTGCCGATCC
66 CCGATCGGAGAGGCAGAATGCACAAGCCGGGGATCAACCCGATCCCCCTTGAGTGCTGCCGATCC
** **
32497754 TGTTGTCGCAACCCTC-GATCCGGTATGATCTTAGACTGGGAATGAACTCCGTAT
131 TACTACCGCAACCCTCAG-TCCGGTATGATCTTAGACTGGGAATGAACTCCGTAT
* ** *
32497808 GCTTAGACATGGAATGAACTCCGTATGCTTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAAACACGAAACGAGCGTGCGGGCGCTCAG
* * ** *
32497873 CCTG-TCGGAGAGGCA-AATGCGCAAGCCGGGGATCAACCCGGTCCCTTTCTGAGTGCTGTCGAT
66 CC-GATCGGAGAGGCAGAATGCACAAGCCGGGGATCAACCCGATCCCCCT-TGAGTGCTGCCGAT
* * *
32497936 CCTACTACCGCAACCCTCAGTCCTGTCTGATCTTAGACTGGGAATGAACTCTGTAT
129 CCTACTACCGCAACCCTCAGTCCGGTATGATCTTAGACTGGGAATGAACTCCGTAT
32497992 GC
1 GC
32497994 CTATGTTAAC
Statistics
Matches: 162, Mismatches: 21, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
183 28 0.17
184 132 0.81
185 2 0.01
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.22
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAAACACGAAACGAGCGTGCGGGCGCTCAG
CCGATCGGAGAGGCAGAATGCACAAGCCGGGGATCAACCCGATCCCCCTTGAGTGCTGCCGATCC
TACTACCGCAACCCTCAGTCCGGTATGATCTTAGACTGGGAATGAACTCCGTAT
Found at i:32498045 original size:856 final size:862
Alignment explanation
Indices: 32496087--32498211 Score: 2625
Period size: 856 Copynumber: 2.5 Consensus size: 862
32496077 CCGATTGGAT
** * *
32496087 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCGTGAAATGAGCGTGCGGGCACTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
* * * * *
32496152 CGACCAGAGAGGCAGAATGCACAAGCTGGGGATCGGCCCAATCCCTCCCTGTATGCTATCGATCC
66 CG-CCAGAGAGGCAGAATGCACAAGCCGGGGATCAGCCCAATCCCT-TCTGCATGCTGTCGATCC
* *
32496217 TACTGTCGCAACCCTCAG-CCTGGTCTAATCTTAGA-TCGGGAATCAACTCCGTATGCATAAGTC
129 TACTATCGCAACCCTCAGTCCTGGTCTAATCTTAGACT-GGGAATGAACTCCGTATGCATAAGTC
* * * * *
32496280 AACCCATGAAACGAGCGTACGGGTGCTGAGCCAACCGAAGAGGCGTAATGCGCAAGCCGAGGAT-
193 AACCCACGAAACGAGCGTGCGGGTGTTGAGCCGACCGAAGAGGCATAATGCGCAAGCCGAGGATC
* * ** * *
32496344 GGCCCGGTCCCTTTCTGCGTGCTGCCAATCCCGCTGCCACAACCCTCGGTTCGGCTGGGGCTTAG
258 GGCCCGGTCCCTCTCTGCGTGCTGTCGGTCCCGCTGCCACAACCCTCGGTCCGACTGGGGCTTAG
* * *
32496409 ACATGGAACGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAGCCAATC
323 ACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTACGGGCGCTCAGCCAATC
* * * *
32496474 GGAGAGGCAGAATGCGCAAGTCGGCAATCAACCCTGTCCCCCCTGCGTGCTGTTGATCCTGTGCC
388 GGAGAGGTAGAATGCGCAAGTCGGCAATCAACCCAGTCCCCCCTGCGTGCTGCTGATCCTCTGCC
* * *
32496539 GTAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTTTGTATGCTTAGACTGGGGATGAA
453 GCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAA
* * * * *
32496604 CTCCATATGCCTAAGTCAACCCATGAAACCAGCATGCGGGCGCTCAGCCGGCCGGAGAGGTATAA
518 CTCCATATGCCTAAGTCAACCCATAAAACCAGCATGCGGGCACTCAACCGACCGGAGAGGCATAA
*
32496669 TGCGTAAGCCGAGGATCAGCCCGATCCCCCTCTACGTGCTGTCGATCCTGCATCGGTCCTACTGC
583 TGCGTAAGCCGAGGATCAGCCCGATCCCCCTCTACGTGCTGCCGATCCTGCATCGGTCCTACTGC
* * ** *
32496734 CACAACCCTCGGTCCGGCTAGGTCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATG
648 CACAACCCTCGATCCGGCTAGGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAAAACACG
* * * *
32496799 AAACGAGCGTGCGGGCACTCAGTCGGCCAGAGATGCAGAATACGCAAGCCGGGGATCATCCCGGT
713 AAACGAGCGTGCGGGCACTCAGTCGACCAGAGAGGCAGAATACACAAGCCGGGGATCATCCCGAT
* * *
32496864 CCCCCCTACGTGCTGTCGATCCTGTTGCTGGTCCTGCTGCCGTAACCTTCAGTCCGATCTGATCT
778 CCCCCCTACGTGCTGCCGATCCTGTT-CTGG--CTGCTGCCG-AACCCTCAGTCCGATATGATCT
*
32496929 TAGACCGAGAATGAACTCTGTATG
839 TAGACCGAGAATGAACTCCGTATG
* * * * * *
32496953 CTTAGACATGGAATGGACTCTGTATGCCTAAGCCAACCCACGAAACGAGGGTGCAGGCGCTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
* * * * *
32497018 CGGCCAGAGAGGTAGAATGCACAAGTCGGGGATTAGCCTAATCTCC-TCTGCATGTTGTCGATCC
66 C-GCCAGAGAGGCAGAATGCACAAGCCGGGGATCAGCCCAATC-CCTTCTGCATGCTGTCGATCC
* * * *
32497082 TGCTATCGTAAGCCTCAGT-CTGGTCTAATCTTATACTGGGAATGAACTCCGTATGCATAAGTCA
129 TACTATCGCAACCCTCAGTCCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCA
* * * * * *
32497146 ACCCACGAAACGTGCATGCGGGTATTGAGCCGACTGAAGAGGCATAATGTGCAAGTCGAGGATCG
194 ACCCACGAAACGAGCGTGCGGGTGTTGAGCCGACCGAAGAGGCATAATGCGCAAGCCGAGGATCG
* * * * * * ** *
32497211 ACCCGATCCCTCTCTACATACTATCGGTCCCGCTGCCGTAACCCTCGGTCCGACTGGGGCTCAGA
259 GCCCGGTCCCTCTCTGCGTGCTGTCGGTCCCGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGA
* * * * * *
32497276 CATGGAATGAACTCCCTAAGCCTAAGCCAACCCACGAAATGGGCATACGGGCGCTCAGTCGATTG
324 CATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTACGGGCGCTCAGCCAATCG
** * *
32497341 GAGAGGTAGAATGCGCAAGTCGGGGATCGACCCAGTCCCCCCTGCGTGTTGCTGATCCTACTGCC
389 GAGAGGTAGAATGCGCAAGTCGGCAATCAACCCAGTCCCCCCTGCGTGCTGCTGATCCT-CTGCC
* * *
32497406 GCAACCCTCGATCCGGTCTGATCTTAGATTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAA
453 GCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAA
** * * * * *
32497471 CTCTGTATGCCTAAGTCAAGCCATAAAACGAGCGTGTGGGCACTCAACCGATCGGAGAGGCATAA
518 CTCCATATGCCTAAGTCAACCCATAAAACCAGCATGCGGGCACTCAACCGACCGGAGAGGCATAA
* * * *
32497536 TGCGTAAGCCCG-GGATCAGCTCGATCCCTCTCTGCGTGCTGCCGAT-CTCGCTGTCGGTCCTAC
583 TGCGTAAG-CCGAGGATCAGCCCGATCCCCCTCTACGTGCTGCCGATCCT-GC-ATCGGTCCTAC
* * * * *
32497599 TGCCACAACCCTCGATCCGGTTGGGGCTTAGACATGGAATGAACTTCGTATGCCTAATCCAAAAC
645 TGCCACAACCCTCGATCCGGCTAGGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAAAAC
* * * *
32497664 ACGAAACGAGCGTGCGGGCGCTCAGTCGATCGGAGAGGCAGAATGCACAAGCCGGGGATCGA-CC
710 ACGAAACGAGCGTGCGGGCACTCAGTCGACCAGAGAGGCAGAATACACAAGCCGGGGATC-ATCC
* ** *
32497728 CGATCCCCCTTGTGTGCTGCCGATCCTG-T-T-G-T-C-G-C-AACCCTC-GATCCGGTATGATC
774 CGATCCCCCCTACGTGCTGCCGATCCTGTTCTGGCTGCTGCCGAACCCTCAG-TCCGATATGATC
* *
32497784 TTAGACTGGGAATGAACTCCGTATG
838 TTAGACCGAGAATGAACTCCGTATG
*
32497809 CTTAGACATGGAATGAACTCCGTATGCTTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
* * * * **
32497874 CTGTCGGAGAGGCA-AATGCGCAAGCCGGGGATCAACCCGGTCCCTTTCTG-AGTGCTGTCGATC
66 C-GCCAGAGAGGCAGAATGCACAAGCCGGGGATCAGCCCAATCCC-TTCTGCA-TGCTGTCGATC
* * * * * *
32497937 CTACTACCGCAACCCTCAGTCCT-GTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTATGTT
128 CTACTATCGCAACCCTCAGTCCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCATAAGTC
* * * * ** *
32498001 AACCCACGAAAGGAGCGTGCGGGCGTTAAGCCGACCGGAGAGGCATAATGCATAAGCCGGGGATC
193 AACCCACGAAACGAGCGTGCGGGTGTTGAGCCGACCGAAGAGGCATAATGCGCAAGCCGAGGATC
* * *
32498066 GGCCCGGTCCCTCTCTGCGTGCTGTCGGTCCCACTGCCACAACCTTCGATCCGACTGGGGCTTAG
258 GGCCCGGTCCCTCTCTGCGTGCTGTCGGTCCCGCTGCCACAACCCTCGGTCCGACTGGGGCTTAG
* * *
32498131 GCATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAACCAATC
323 ACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTACGGGCGCTCAGCCAATC
*
32498196 GAAGAGGTAGAATGCG
388 GGAGAGGTAGAATGCG
32498212 TAAATCGAGG
Statistics
Matches: 1060, Mismatches: 184, Indels: 40
0.83 0.14 0.03
Matches are distributed among these distances:
854 2 0.00
855 23 0.02
856 347 0.33
857 2 0.00
858 1 0.00
859 1 0.00
860 1 0.00
861 1 0.00
864 1 0.00
865 122 0.12
866 252 0.24
867 160 0.15
868 146 0.14
869 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.21
Consensus pattern (862 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
CGCCAGAGAGGCAGAATGCACAAGCCGGGGATCAGCCCAATCCCTTCTGCATGCTGTCGATCCTA
CTATCGCAACCCTCAGTCCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAAC
CCACGAAACGAGCGTGCGGGTGTTGAGCCGACCGAAGAGGCATAATGCGCAAGCCGAGGATCGGC
CCGGTCCCTCTCTGCGTGCTGTCGGTCCCGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACA
TGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTACGGGCGCTCAGCCAATCGGA
GAGGTAGAATGCGCAAGTCGGCAATCAACCCAGTCCCCCCTGCGTGCTGCTGATCCTCTGCCGCA
ACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTC
CATATGCCTAAGTCAACCCATAAAACCAGCATGCGGGCACTCAACCGACCGGAGAGGCATAATGC
GTAAGCCGAGGATCAGCCCGATCCCCCTCTACGTGCTGCCGATCCTGCATCGGTCCTACTGCCAC
AACCCTCGATCCGGCTAGGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAAAACACGAAA
CGAGCGTGCGGGCACTCAGTCGACCAGAGAGGCAGAATACACAAGCCGGGGATCATCCCGATCCC
CCCTACGTGCTGCCGATCCTGTTCTGGCTGCTGCCGAACCCTCAGTCCGATATGATCTTAGACCG
AGAATGAACTCCGTATG
Found at i:32498224 original size:159 final size:158
Alignment explanation
Indices: 32497808--32498214 Score: 444
Period size: 159 Copynumber: 2.6 Consensus size: 158
32497798 AACTCCGTAT
* * *
32497808 GCTTAGACATGGAATGAACTCCGTATGCTTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
** * *
32497873 CCTGTCGGAGAGGCAAATGCGCAAGCCGGGGATCAACCCGGTCCCTTTCTGAGTGCTGTCGATCC
66 CCAATCGGAGAGGCAAATGCGTAAGCCGGGGATCAACCCGGTCCCTCTCTGAGTGCTGTCGATCC
* * *
32497938 TACTACCGCAACCCTCAGTCCTGTCTGA
131 CACTACCACAACCCTCAGTCCTGACTGA
* * * ** * *
32497966 TCTTAGAC-TGGGAATGAACTCTGTATGCCTATGTTAACCCACGAAAGGAGCGTGCGGGCG-TTA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * ** * *
32498029 AGCCGACCGGAGAGGCATAATGCATAAGCCGGGGATCGGCCCGGTCCCTCTCTGCGTGCTGTCGG
65 A-CCAATCGGAGAGGCA-AATGCGTAAGCCGGGGATCAACCCGGTCCCTCTCTGAGTGCTGTCGA
* * *
32498094 TCCCACTGCCACAACCTTC-GATCC-GACTGGG
128 TCCCACTACCACAACCCTCAG-TCCTGACT-GA
* * *
32498125 GCTTAGGCATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
* *
32498190 CCAATCGAAGAGGTAGAATGCGTAA
66 CCAATCGGAGAGGCA-AATGCGTAA
32498215 ATCGAGGATC
Statistics
Matches: 201, Mismatches: 41, Indels: 13
0.79 0.16 0.05
Matches are distributed among these distances:
157 3 0.01
158 67 0.33
159 127 0.63
160 4 0.02
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
CCAATCGGAGAGGCAAATGCGTAAGCCGGGGATCAACCCGGTCCCTCTCTGAGTGCTGTCGATCC
CACTACCACAACCCTCAGTCCTGACTGA
Found at i:32498753 original size:21 final size:22
Alignment explanation
Indices: 32498723--32498763 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
32498713 GCCGAGGATG
*
32498723 GCTCGAT-CCCTTTTTCGTGTT
1 GCTCGATCCCCCTTTTCGTGTT
*
32498744 GCTCGGTCCCCCTTTTCGTG
1 GCTCGATCCCCCTTTTCGTG
32498764 CACAACCCTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 6 0.35
22 11 0.65
ACGTcount: A:0.02, C:0.34, G:0.22, T:0.41
Consensus pattern (22 bp):
GCTCGATCCCCCTTTTCGTGTT
Found at i:32499479 original size:25 final size:26
Alignment explanation
Indices: 32499431--32499482 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
32499421 CCGATCAAAT
*
32499431 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCTGTATG
*
32499457 CTTAGACTAGG-ATGAACTTTGTATG
1 CTTAGACTAGGAATGAACTCTGTATG
32499482 C
1 C
32499483 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 14 0.58
26 10 0.42
ACGTcount: A:0.27, C:0.15, G:0.25, T:0.33
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCTGTATG
Found at i:32500351 original size:26 final size:26
Alignment explanation
Indices: 32500322--32500374 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32500312 TCAGTCTGAT
*
32500322 CTTAGAC-TAGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
32500348 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
32500374 C
1 C
32500375 CTAAGTGAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:32500773 original size:159 final size:155
Alignment explanation
Indices: 32500347--32500774 Score: 389
Period size: 159 Copynumber: 2.7 Consensus size: 155
32500337 AACTCTGTAT
* *
32500347 GCTTAGACATGGAATGAACTCCGTATGCCTAAGTGAA-CCAGCAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCAG-AAACGAGCGTGCGGGCACTCAG
* * * * *
32500411 TCGATCGAAGAGGCAGAATGCGTAAG-TCGGGGATCGGCCCGATCCCCCTATGTGCTATTGATCC
65 CCGACCGAAGAGGCAAAATGCGTAAGCT-GGGGATCGG-CCGATCCCCCTACGTGCTATCGATCC
* ** * *
32500475 TGCTACTGCAACCCTCTATCCGGTGTGA
128 CGCTACCACAACCCTCGATCCGCTGTGA
* * * * * *
32500503 TCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCTACCCACGAAACGAGTGTGCGGGCATTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGTCAACCCA-GAAACGAGCGTGCGGGCACTCA
* * * * * * * * *
32500567 GCCGACCGAAGAGGCATAATGTGCAAGCCGAGGATCGGCTTGGTCCCCCTCCACGTGCTGTCGGT
64 GCCGACCGAAGAGGCAAAATGCGTAAGCTGGGGATCGGC-CGATCCCCCT--ACGTGCTATCGAT
* * * * *
32500632 CCCGCTTCCATAACCCTCGGTCTGACTG-GG
126 CCCGCTACCACAACCCTCGATCCG-CTGTGA
* * *
32500662 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATG-GACGTGCGGGCACTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCA-GAAACGAG-CGTGCGGGCACTCA
*
32500726 GCCGGCCGAAGAGGCAAAATGCGTAAGCTGGGGATCGGTCCGATCCCCC
64 GCCGACCGAAGAGGCAAAATGCGTAAGCTGGGGATCGG-CCGATCCCCC
32500775 CTGCATGCTG
Statistics
Matches: 212, Mismatches: 49, Indels: 19
0.76 0.17 0.07
Matches are distributed among these distances:
155 1 0.00
156 32 0.15
157 58 0.27
158 2 0.01
159 115 0.54
160 4 0.02
ACGTcount: A:0.24, C:0.28, G:0.28, T:0.20
Consensus pattern (155 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCAGAAACGAGCGTGCGGGCACTCAGC
CGACCGAAGAGGCAAAATGCGTAAGCTGGGGATCGGCCGATCCCCCTACGTGCTATCGATCCCGC
TACCACAACCCTCGATCCGCTGTGA
Found at i:32501266 original size:21 final size:21
Alignment explanation
Indices: 32501242--32501288 Score: 76
Period size: 21 Copynumber: 2.2 Consensus size: 21
32501232 GCGCTGAACC
*
32501242 GGTCCCTCTCTACGTGCTGCT
1 GGTCCCCCTCTACGTGCTGCT
*
32501263 GGTCCCCCTCTGCGTGCTGCT
1 GGTCCCCCTCTACGTGCTGCT
32501284 GGTCC
1 GGTCC
32501289 TGCTGCCACA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.02, C:0.40, G:0.28, T:0.30
Consensus pattern (21 bp):
GGTCCCCCTCTACGTGCTGCT
Found at i:32501489 original size:26 final size:26
Alignment explanation
Indices: 32501453--32501505 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
32501443 CTGGTCTAAT
*
32501453 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
32501479 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
32501505 C
1 C
32501506 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:32502068 original size:159 final size:156
Alignment explanation
Indices: 32501880--32502456 Score: 530
Period size: 159 Copynumber: 3.5 Consensus size: 156
32501870 TCGGTCTAAT
* * * * * *
32501880 CTTAGAC-TGGGAATGAGCTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGAGGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCTTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGAGCTCAG
* *
32501944 CCGATCGGAGAGGCGTAATGCGCAAGCCGAGGATCGGCTCGGTCCCCCTCTGCGTGCTGCCGGTC
65 CCGA-CGGAGAGGCATAATGCGCAAGCCGAGGATC-GCTCGGTCCCCCTCTGCGTGCTACCGGTC
* * *
32502009 CCACTGCCATAACCCTCGATCTGACTGGGG
128 CCGCTGCCACAACCCTCG-TCCGACTGGGG
* *
32502039 CTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAATTGGGCGTGCGGGAGCCTCA
1 CTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAA-CGAGCGTGCGGGAG-CTCA
* * * * *
32502104 GCCAACCGGATAGGCATAATGCGTAAGTCGAGGATTCGCTCGATCCCTTTCTGCATGCTGTCGAT
64 GCCGA-CGGAGAGGCATAATGCGCAAGCCGAGGA-TCGCTCGGTCCC---C--C-T-CTG-CG-T
* * *
32502169 CCCGCTACCAGTCCTGCTACCACAACCCTCGGTCCGACTGGGG
118 ---GCTACCGGTCCCGCTGCCACAACCCTC-GTCCGACTGGGG
* * * * *
32502212 CTTAGACATGGAATGGATCTTCATT-TGCCTAAGCCAACCCACGAAACGAGCATGCGGGTGCTTA
1 CTTAGACATGGAAT-GAAC-TCCTTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGAGCTCA
* * * * * * *
32502276 GTCGACTGGAGGGGCATAATGCGCAAGCCGGGGATCAGCCCAGTCCCCCTCTGCATGCTACCGGA
64 GCCGAC-GGAGAGGCATAATGCGCAAGCCGAGGATC-GCTCGGTCCCCCTCTGCGTGCTACCGGT
32502341 CCCGCTGCCACAACCCTCTGTCCGACTGGGG
127 CCCGCTGCCACAACCCTC-GTCCGACTGGGG
* * * *
32502372 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTGTGGGCA-CTCAG
1 CTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGG-AGCTCAG
* *
32502436 CCAACTGGAGAGGCAGAATGC
65 CCGAC-GGAGAGGCATAATGC
32502457 ATAAGTCGGG
Statistics
Matches: 337, Mismatches: 58, Indels: 46
0.76 0.13 0.10
Matches are distributed among these distances:
158 3 0.01
159 93 0.28
160 60 0.18
161 40 0.12
162 2 0.01
163 1 0.00
164 2 0.01
165 3 0.01
166 2 0.01
167 2 0.01
168 3 0.01
169 3 0.01
170 1 0.00
171 3 0.01
172 35 0.10
173 55 0.16
174 25 0.07
175 4 0.01
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.19
Consensus pattern (156 bp):
CTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGAGCTCAGC
CGACGGAGAGGCATAATGCGCAAGCCGAGGATCGCTCGGTCCCCCTCTGCGTGCTACCGGTCCCG
CTGCCACAACCCTCGTCCGACTGGGG
Found at i:32502559 original size:26 final size:26
Alignment explanation
Indices: 32502530--32502582 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
32502520 CTGATCCGAT
32502530 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
*
32502556 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
32502582 C
1 C
32502583 CTAAGTCGAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTCCGTATG
Found at i:32503294 original size:26 final size:26
Alignment explanation
Indices: 32503252--32503304 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32503242 GGCTCAAAAT
32503252 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
32503278 CTTAGACAT-GGAGTGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
32503304 C
1 C
32503305 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:32503622 original size:158 final size:159
Alignment explanation
Indices: 32503275--32503676 Score: 388
Period size: 158 Copynumber: 2.5 Consensus size: 159
32503265 TGAACTCCGT
* * *
32503275 ATGCTTAGACATGGAGTGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTC
1 ATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGAGGGCGCTC
* ** *
32503340 AGTCGACCAGAGAGGCAGAATGTGCAAGCCGAGGATCGGCTCGATCCCCCCTGCATGCTATTGAT
66 AGCCGACCAGAGAGGCAGAATACGCAAGCCGAGGATCGGCTCGATCCCCCCTGCATGCTATCGAT
* * **
32503405 CCTGTTGCCGGAACCCTCGGTCCGGTCTG
131 CCCGCTGCCACAACCCTCGGTCCGGTCTG
* *
32503434 AT-CTTAGAC-TGATAATGAACTTCGTATGCCTAAG-CAACCCACGAAACGAGCGTGAGGGCGCT
1 ATGCTTAGACATG-GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGAGGGCGCT
* * * * * * * *
32503496 GAGCCAGTCGA-AGAGGCATAATACGCAAGCC-AGGGATC-GATCCGGTCCCCCTCTTCATGCTG
65 CAGCC-GACCAGAGAGGCAGAATACGCAAGCCGA-GGATCGGCT-CGATCCCCC-CTGCATGCTA
* *
32503558 TCGGTCCCGCTGCCACAACCCTCGGTCTGG-CTG
126 TCGATCCCGCTGCCACAACCCTCGGTCCGGTCTG
* * * * ** * *
32503591 -TGGCTTAGACATGGAATGAACTCCCTATGCCTCACCCAACCCATGAAATAAGCGTGCGGGAGCT
1 AT-GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGAGGGCGCT
* **
32503655 CAGCAGACTGGAGAGGCAGAAT
65 CAGCCGACCAGAGAGGCAGAAT
32503677 GCACAAGCTG
Statistics
Matches: 194, Mismatches: 39, Indels: 20
0.77 0.15 0.08
Matches are distributed among these distances:
156 4 0.02
157 64 0.33
158 86 0.44
159 40 0.21
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.19
Consensus pattern (159 bp):
ATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGAGGGCGCTC
AGCCGACCAGAGAGGCAGAATACGCAAGCCGAGGATCGGCTCGATCCCCCCTGCATGCTATCGAT
CCCGCTGCCACAACCCTCGGTCCGGTCTG
Found at i:32504228 original size:158 final size:158
Alignment explanation
Indices: 32503970--32504462 Score: 492
Period size: 158 Copynumber: 3.1 Consensus size: 158
32503960 GCTTAGACAT
* * * * *
32503970 GGAATAAACTCCATATGCCTAAGCCAACCCACGAAACT-AGTGTGCGGGCGCTCAGTCGGCCGGA
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA-TGAGTGTGCGGGCGCTCAGCCAGACGGA
* * * * * * * *
32504034 GAGGCAGAATGCGCAAGTCGAGGATTGGCTCGGTCCCCCCTACGTGCTGTCGATCCTGCTATAGC
65 GAGGCAGAATGCACAAGTCGGGGATCGACCCAGTCCCCCCTACGTGCTGCCGATCCTGCTACAGC
*
32504099 AACCCTCGGTCCGATCCGATCTTAGATTG
130 AACCCTCGGTCTGATCCGATCTTAGATTG
** * * * *
32504128 GGAATGAACTCCGTATGCCTAAGTGAAGCCACGAAATGAGTGTGCGGGCGCTGAGCCAGTCGAAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGTGTGCGGGCGCTCAGCCAGACGGAG
** * ** * * *
32504193 AGGCTTAATACACAAGTCGGGGATCGACCCAGTCCCCCTCTGTGTGCTGCCGGTCCCGCTGCCA-
66 AGGCAGAATGCACAAGTCGGGGATCGACCCAGTCCCCC-CTACGTGCTGCCGATCCTGCT-ACAG
* * * ** *
32504257 TAACCCTCGGTCTG-GCTGGGGCTTAGACAT-
129 CAACCCTCGGTCTGATC-CGATCTTAGA-TTG
* * * * * *
32504287 GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGTGTGTGGGCACTCAGCCA-ACTGGA
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGTGTGCGGGCGCTCAGCCAGAC-GGA
* * * *
32504351 GAGGCAGAATGCATAAGTCGGGGATCGACCCAGTCCCCCCTACGCGCTGCCGATCCTACTACCGC
65 GAGGCAGAATGCACAAGTCGGGGATCGACCCAGTCCCCCCTACGTGCTGCCGATCCTGCTACAGC
*
32504416 AACCCTCGATCTGATCCGATCTTAGATTG
130 AACCCTCGGTCTGATCCGATCTTAGATTG
32504445 GGAATGAACTCCGTATGC
1 GGAATGAACTCCGTATGC
32504463 TTAGATTGGG
Statistics
Matches: 261, Mismatches: 65, Indels: 18
0.76 0.19 0.05
Matches are distributed among these distances:
157 3 0.01
158 135 0.52
159 121 0.46
160 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (158 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGTGTGCGGGCGCTCAGCCAGACGGAG
AGGCAGAATGCACAAGTCGGGGATCGACCCAGTCCCCCCTACGTGCTGCCGATCCTGCTACAGCA
ACCCTCGGTCTGATCCGATCTTAGATTG
Found at i:32504465 original size:26 final size:26
Alignment explanation
Indices: 32504436--32504488 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
32504426 CTGATCCGAT
32504436 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
*
32504462 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
32504488 C
1 C
32504489 CTAAGTCGAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTCCGTATG
Found at i:32505503 original size:158 final size:158
Alignment explanation
Indices: 32505183--32505581 Score: 380
Period size: 158 Copynumber: 2.5 Consensus size: 158
32505173 ACTCCGTTTG
* * * *
32505183 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGAGGGCGCTCAGC
** * *
32505248 CGACCAGAGAGGCAGAATGTGCAAGCCGAGGATCGGCTCGATCCCCCCTGCATGCTATTGATCCT
66 CGACCAGAGAGGCAGAATACGCAAGCCGAGGATCGGCTCGATCCCCCCTGCATGCTATCGATCCC
* **
32505313 GTTGCCGGAACCCTCGGTCCGGTCTGAT
131 GCTGCCACAACCCTCGGTCCGGTCTGAT
* * *
32505341 CTTAGAC-TGATAATGAACTTCGTATGCCTAAG-CAACCCACGAAACGAGCGTGAGGGCGCTGAG
1 CTTAGACATG-GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGAGGGCGCTCAG
* * * * * * *
32505404 CCAGTCGA-AGAGGCATAATACGCAAGCC-AGGGATC-GATCCGGTCCCCCTCTTCATGCTGTCG
65 CC-GACCAGAGAGGCAGAATACGCAAGCCGA-GGATCGGCT-CGATCCCCC-CTGCATGCTATCG
* *
32505466 GTCCCGCTGCCACAACCCTCGGTCTGG-CTG-T
126 ATCCCGCTGCCACAACCCTCGGTCCGGTCTGAT
* * * * ** * *
32505497 GGCTTAGACATGGAATGAACTCCCTATGCCTCACCCAACCCATGAAATAAGCGTGCGGGAGCTCA
1 --CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGAGGGCGCTCA
* **
32505562 GCAGACTGGAGAGGCAGAAT
64 GCCGACCAGAGAGGCAGAAT
32505582 GCACAAGCTG
Statistics
Matches: 192, Mismatches: 39, Indels: 19
0.77 0.16 0.08
Matches are distributed among these distances:
156 4 0.02
157 63 0.33
158 87 0.45
159 38 0.20
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.19
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGAGGGCGCTCAGC
CGACCAGAGAGGCAGAATACGCAAGCCGAGGATCGGCTCGATCCCCCCTGCATGCTATCGATCCC
GCTGCCACAACCCTCGGTCCGGTCTGAT
Found at i:32506280 original size:159 final size:157
Alignment explanation
Indices: 32505826--32506277 Score: 425
Period size: 158 Copynumber: 2.9 Consensus size: 157
32505816 TGTCGATCCG
* * ** ** *
32505826 GCTGCCGGTCCTGCTGCCCCAACCCTTAGTCC-AGTTGGGGCTTAGACATGGAATGAACTCCATA
1 GCTGCCGATCCCGCTGCAGCAACCCTCGGTCCGAGCTGGGGCTTAGACATGGAATGAACTCCATA
*
32505890 TGCCTAAGCCAACCCACGAAACTA-GCGTGCGGGCGCTCAGTCGGCCGGAGAGGCAGAATGCGCA
66 TGCCTAAGCCAACCCACGAAA-TAGGC-TGCGGGCGCTCAGCCGGCC-GAGAGGCAGAATGCGCA
* * * *
32505954 AGTCGAGGATTGGCTCGGTCCCCCCTGCGT
128 AGTCGGGGATCGGCCCAGTCCCCCCTGCGT
* * * * ** *
32505984 GCTGTCGATCCTGCTGTAGCAACCCTCGGTCCGATCT-GATCTTAGAC-TGGGAATGAACTCCGT
1 GCTGCCGATCCCGCTGCAGCAACCCTCGGTCCGAGCTGGGGCTTAGACAT-GGAATGAACTCCAT
** * * * * ** * *
32506047 ATGCCTAAGTGAAGCCACGAAATGAGTG-TGCGGGCGCTGAGCCAGTCGAAGAGGCTTAATACAC
65 ATGCCTAAGCCAACCCACGAAAT-AG-GCTGCGGGCGCTCAGCCGGCCG-AGAGGCAGAATGCGC
*
32506111 AAGTCGGGGATCGGCCCAGTCCCCCTCTGTGT
127 AAGTCGGGGATCGGCCCAGTCCCCC-CTGCGT
* * * *
32506143 GCTGCCGGTCCCGCTGCCA-TAACCCTCGGTCTG-GCTGGGGCTTAGACATGGAATGAACTCCCT
1 GCTGCCGATCCCGCTG-CAGCAACCCTCGGTCCGAGCTGGGGCTTAGACATGGAATGAACTCCAT
* *
32506206 ATGCCTAAGCCAACCCATGAAATAGGCATGCGGGCGCTCAACCGGCCAGAGAGGCAGAATGCGCA
65 ATGCCTAAGCCAACCCACGAAATAGGC-TGCGGGCGCTCAGCCGGCC-GAGAGGCAGAATGCGCA
32506271 AG-CGGGG
128 AGTCGGGG
32506278 GATTAGCCTG
Statistics
Matches: 231, Mismatches: 50, Indels: 26
0.75 0.16 0.08
Matches are distributed among these distances:
157 4 0.02
158 122 0.53
159 101 0.44
160 4 0.02
ACGTcount: A:0.22, C:0.30, G:0.30, T:0.19
Consensus pattern (157 bp):
GCTGCCGATCCCGCTGCAGCAACCCTCGGTCCGAGCTGGGGCTTAGACATGGAATGAACTCCATA
TGCCTAAGCCAACCCACGAAATAGGCTGCGGGCGCTCAGCCGGCCGAGAGGCAGAATGCGCAAGT
CGGGGATCGGCCCAGTCCCCCCTGCGT
Found at i:32506805 original size:158 final size:158
Alignment explanation
Indices: 32506517--32506914 Score: 365
Period size: 158 Copynumber: 2.5 Consensus size: 158
32506507 CTGCTGCCAT
* * *
32506517 AACCCTTGGTCCAGCTGGGTCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAA
1 AACCCTTGGTCCAGCTGGATCTTAGACATGGAATAAACTCCGTATGCATAAGCCAACCCATGAAA
* ** * ** *
32506582 CGAGCGTACGGGCACTCAGTCAACCGAAGAGGCAGAATGCGCAAGTCGGGGATCGGCCTAGTCCC
66 CGAGCGTACAGGCACTCACCCAACCGAAGAGGCAGAATACGCAAGTCGACGATCGGCCGAGTCCC
32506647 CCCTGCGTGTTGTTGATCTTACTGCCTC
131 CCCTGCGTGTTGTTGATCTTACTGCCTC
* ** *
32506675 AACCCTTGGTCCGATCT-GATCTTAGAC-TAGGAATAAACTTTGTATGCATAAGTCAACCCATGA
1 AACCCTTGGTCC-AGCTGGATCTTAGACAT-GGAATAAACTCCGTATGCATAAGCCAACCCATGA
* * * * * *
32506738 AACGAGCGTACAGGCGCTGACCCGACCGAAGAGGCATAATACGTAAGTCGACGATTGGCTCGA-T
64 AACGAGCGTACAGGCACTCACCCAACCGAAGAGGCAGAATACGCAAGTCGACGATCGGC-CGAGT
* * * * * ** *
32506802 CCCCCTCTACATGCTGTCGGTCCCACTGCCAC
128 CCCCC-CTGCGTGTTGTTGATCTTACTGCCTC
** ** * * *
32506834 AA-CCTTCGGTCC-GACTGGGGCTTAGACATGGAACGAACTCCCTATGCCTAAGCCAACCCACGA
1 AACCCTT-GGTCCAG-CTGGATCTTAGACATGGAATAAACTCCGTATGCATAAGCCAACCCATGA
* * *
32506897 AATGGGCGTGCAGGCACT
64 AACGAGCGTACAGGCACT
32506915 TAGCCAGCCA
Statistics
Matches: 189, Mismatches: 43, Indels: 15
0.77 0.17 0.06
Matches are distributed among these distances:
157 1 0.01
158 109 0.58
159 78 0.41
160 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.25, T:0.21
Consensus pattern (158 bp):
AACCCTTGGTCCAGCTGGATCTTAGACATGGAATAAACTCCGTATGCATAAGCCAACCCATGAAA
CGAGCGTACAGGCACTCACCCAACCGAAGAGGCAGAATACGCAAGTCGACGATCGGCCGAGTCCC
CCCTGCGTGTTGTTGATCTTACTGCCTC
Found at i:32507048 original size:26 final size:26
Alignment explanation
Indices: 32507012--32507064 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
32507002 CAGGTCCGAT
* *
32507012 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
32507038 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
32507064 C
1 C
32507065 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:32507355 original size:672 final size:671
Alignment explanation
Indices: 32505183--32507832 Score: 3115
Period size: 672 Copynumber: 3.9 Consensus size: 671
32505173 ACTCCGTTTG
* * *
32505183 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCACTCAGT
* * * * * *
32505248 CGACC-AGAGAGGCAGAATGTGCAAGCCGAGGATCGGCTCGATCCCCCCTGCATGCTATTGATCC
66 CAACCGA-AGAGGCAGAATGCGCAAGTCGAGGATCGGCTAG-TCCCCCCTGCGTGCTGTTGATCC
** * * * * *
32505312 TGTTGCCGGAACCCTCGGTCCGGTCTGATCTTAGACT-GATAATGAACTTCGTATGCCTAAG-CA
129 TACTGCCGCAACCCTCGGTCCGATCTGATCTTAGACTAG-GAATAAACTTCGTATGCATAAGTCA
* * * * *
32505375 ACCCACGAAACGAGCGTGA-GGGCGCTGAGCCAGTCGAAGAGGCATAATACGCAAG-CCAGGGA-
193 ACCCACGAAACGAGCGT-ACAGGCGCTGACCCAGCCGAAGAGGCATAATACGCAAGTCGA-CGAT
* * * * * * * *
32505437 TCGATCCGGTCCCCCTCTTCATGCTGTCGGTCCCGCTGCCACAACCCTCGGTCTGGCTGTGGCTT
256 TGGCT-CGATCCCCCTCTACATGCTGTCGGTCCCACTGCCACAACCCTCGGTCCGACTGGGGCTT
* * * * * *
32505502 AGACATGGAATGAACTCCCTATGCCTCACCCAACCCATGAAATAAGCGTGC-GGGAGCTCAG-CA
320 AGACATGGAACGAACTCCCTATGCCTAAGCCAACCCACGAAATAGGCGTGCAGGCA-CTCAGCCA
** * ** ** *
32505565 GACTGGAGAGGCAGAATGCACAAGCTGATGATTAGCCCAGTCCC-CCATGCGTGCTGTCGATCCT
384 G-CCAGAGAGGCAGAATGCGCAAGCTGGGGATTAGCCTGGTCCCTCC-TGCGTGCTGCCGATCCT
* * * * * *
32505629 AC-ACCGCAACCATCGGTCCGGTCCAATCTTAGACTGGGAATGAACGTC-ATATGCTTAGACTAG
447 GCTACCGCAACCCTCGGTCAGGTCCGATCTTAGACTGGGAATGAAC-TCTGTATGCTTAGACTGG
* * *
32505692 GGATGAACTCTGTATGCCTAAGTCGACCCATGAAACGAGCGTGCGAGTGCTCAACCGATCGAAGA
511 GGATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGTGCTC-A--G--C--TG-
* * * *
32505757 AGCCAATCGGAGAGGTATAATGCGCAAGCCGAGGATCAACCCGGTCCCCCTCTGCGTGCTGTCGA
568 -G-C---CGGAGAGGCATAATGCGCAAGCCGAGGATCAGCCCGATCCCCCTCTGCGTGCTGTCAA
* * * * * *
32505822 TCCGGCTGCCGGTCCTGCTGCCCCAACCCTTAGTCCAGTTGGGG
628 TCCCGCTGCAGGTCCTGCTGCCACAACCCTTGGTCCAGCTGGGT
* * * * *
32505866 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACTAGCGTGCGGGCGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCACTCAGT
** * * * *
32505931 CGGCCGGAGAGGCAGAATGCGCAAGTCGAGGATTGGCTCGGTCCCCCCTGCGTGCTGTCGATCCT
66 CAACCGAAGAGGCAGAATGCGCAAGTCGAGGATCGGCT-AGTCCCCCCTGCGTGCTGTTGATCCT
* ** * * * * * *
32505996 GCTGTAGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTGAAG
130 ACTGCCGCAACCCTCGGTCCGATCTGATCTTAGACTAGGAATAAACTTCGTATGCATAAGTCAAC
* * * * * * * * ** *
32506061 CCACGAAATGAGTGTGCGGGCGCTGAGCCAGTCGAAGAGGCTTAATACACAAGTCGGGGATCGGC
195 CCACGAAACGAGCGTACAGGCGCTGACCCAGCCGAAGAGGCATAATACGCAAGTCGACGATTGGC
* *** * * * * *
32506126 -CCAGTCCCCCTCTGTGTGCTGCCGGTCCCGCTGCCATAACCCTCGGTCTGGCTGGGGCTTAGAC
260 TCGA-TCCCCCTCTACATGCTGTCGGTCCCACTGCCACAACCCTCGGTCCGACTGGGGCTTAGAC
* * * * * * *
32506190 ATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATAGGCATGCGGGCGCTCAACCGGCCAG
324 ATGGAACGAACTCCCTATGCCTAAGCCAACCCACGAAATAGGCGTGCAGGCACTCAGCCAGCCAG
* * * * * **
32506255 AGAGGCAGAATGCGCAAGCGGGGGATTAGCCTGGTCCCCCCTACATGTTGCCGATCCTGCTGTCG
389 AGAGGCAGAATGCGCAAGCTGGGGATTAGCCTGGTCCCTCCTGCGTGCTGCCGATCCTGCTACCG
* * * ** * * * * *
32506320 TAACCCTTGATCCTGTTCGATCTTAGACTGAGAATGAACTCCGTATGCTTGGA-TCGAGGATGAA
454 CAACCCTCGGTCAGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACT-GGGGATGAA
* * * ** *
32506384 CTCTGTATGCCTAAGTCAACCCATGAAATGAGCGT-CCAGCACTCAG-TCGGCCAGAGAGGCATA
518 CTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGTGCTCAGCT-GGCCGGAGAGGCATA
* * * * * *
32506447 ATGCGTAAGCCGGGGATCAGCCCGGTCCCCCTCTGCGTGTTATCAATCCCGCTACAGGTCCTGCT
582 ATGCGCAAGCCGAGGATCAGCCCGATCCCCCTCTGCGTGCTGTCAATCCCGCTGCAGGTCCTGCT
*
32506512 GCCATAACCCTTGGTCCAGCTGGGT
647 GCCACAACCCTTGGTCCAGCTGGGT
32506537 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCACTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCACTCAGT
* * *
32506602 CAACCGAAGAGGCAGAATGCGCAAGTCGGGGATCGGCCTAGTCCCCCCTGCGTGTTGTTGATCTT
66 CAACCGAAGAGGCAGAATGCGCAAGTCGAGGATCGG-CTAGTCCCCCCTGCGTGCTGTTGATCCT
* * *
32506667 ACTGCCTCAACCCTTGGTCCGATCTGATCTTAGACTAGGAATAAACTTTGTATGCATAAGTCAAC
130 ACTGCCGCAACCCTCGGTCCGATCTGATCTTAGACTAGGAATAAACTTCGTATGCATAAGTCAAC
* *
32506732 CCATGAAACGAGCGTACAGGCGCTGACCC-GACCGAAGAGGCATAATACGTAAGTCGACGATTGG
195 CCACGAAACGAGCGTACAGGCGCTGACCCAG-CCGAAGAGGCATAATACGCAAGTCGACGATTGG
*
32506796 CTCGATCCCCCTCTACATGCTGTCGGTCCCACTGCCACAACCTTCGGTCCGACTGGGGCTTAGAC
259 CTCGATCCCCCTCTACATGCTGTCGGTCCCACTGCCACAACCCTCGGTCCGACTGGGGCTTAGAC
* *
32506861 ATGGAACGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCAGGCACTTAGCCAGCCAG
324 ATGGAACGAACTCCCTATGCCTAAGCCAACCCACGAAATAGGCGTGCAGGCACTCAGCCAGCCAG
* * * *
32506926 AGATGTAGAATGCGTAAGCTGGGGATTAGCCTGGTCCCTCCTGCGTGCTGCCAATCCTGCTACCG
389 AGAGGCAGAATGCGCAAGCTGGGGATTAGCCTGGTCCCTCCTGCGTGCTGCCGATCCTGCTACCG
*
32506991 CAACCCTCGGTCAGGTCCGATCTTAGATTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAAC
454 CAACCCTCGGTCAGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAAC
* * *
32507056 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCTGGCCGGATAGGCATAAT
519 TCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGTGCTCAGCTGGCCGGAGAGGCATAAT
* * * * * *
32507121 GCGCAAGTCGGGGATCAGCTCGATCCCCTTCTAG-GTGCTGTCAATCCCACTGCTGGTCCTGCTG
584 GCGCAAGCCGAGGATCAGCCCGATCCCCCTCT-GCGTGCTGTCAATCCCGCTGCAGGTCCTGCTG
* *
32507185 CCACAACCCTCGGTCCGGCTGGGT
648 CCACAACCCTTGGTCCAGCTGGGT
32507209 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCACTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCACTCAGT
* * *
32507274 CAACCGAAGAGGCAGAATGCGCAAGTCGGGGATCGGCCTAGTCCCCCCTGCGTGTTGTTGATCTT
66 CAACCGAAGAGGCAGAATGCGCAAGTCGAGGATCGG-CTAGTCCCCCCTGCGTGCTGTTGATCCT
* * *
32507339 ACTGCCTCAACCCTTGGTCCGATCTGATCTTAGACTAGGAATAAACTTTGTATGCATAAGTCAAC
130 ACTGCCGCAACCCTCGGTCCGATCTGATCTTAGACTAGGAATAAACTTCGTATGCATAAGTCAAC
* *
32507404 CCATGAAACGAGCGTACAGGCGCTGACCC-GACCGAAGAGGCATAATACGTAAGTCGACGATTGG
195 CCACGAAACGAGCGTACAGGCGCTGACCCAG-CCGAAGAGGCATAATACGCAAGTCGACGATTGG
*
32507468 CTCGATCCCCCTCTACATGCTGTCGGTCCCACTGCCACAACCTTCGGTCCGACTGGGGCTTAGAC
259 CTCGATCCCCCTCTACATGCTGTCGGTCCCACTGCCACAACCCTCGGTCCGACTGGGGCTTAGAC
* *
32507533 ATGGAACGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCAGGCACTTAGCCAGCCAG
324 ATGGAACGAACTCCCTATGCCTAAGCCAACCCACGAAATAGGCGTGCAGGCACTCAGCCAGCCAG
* * * *
32507598 AGATGTAGAATGCGTAAGCTGGGGATTAGCCTGGTCCCTCCTGCGTGCTGCCGATCCTGCTATCG
389 AGAGGCAGAATGCGCAAGCTGGGGATTAGCCTGGTCCCTCCTGCGTGCTGCCGATCCTGCTACCG
*
32507663 CAACCCTCGGTCAGGTCCGATCTTAGATTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAAC
454 CAACCCTCGGTCAGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAAC
* ** * * * * ****
32507728 TCTGTATGCCTATGTCAATGCACGAAATGAGCTTACGGGTGCGT-AGCCAATCGGAGAGGCATAA
519 TCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGTGC-TCAGCTGGCCGGAGAGGCATAA
* *
32507792 TGCGCAAGCCGACGATCAGCCCGATTCCCCTCTGCGTGCTG
583 TGCGCAAGCCGAGGATCAGCCCGATCCCCCTCTGCGTGCTG
32507833 CCAAGAGGGA
Statistics
Matches: 1724, Mismatches: 219, Indels: 59
0.86 0.11 0.03
Matches are distributed among these distances:
670 1 0.00
671 547 0.32
672 700 0.41
673 3 0.00
674 1 0.00
675 1 0.00
677 1 0.00
681 1 0.00
683 167 0.10
684 212 0.12
685 90 0.05
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (671 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCACTCAGT
CAACCGAAGAGGCAGAATGCGCAAGTCGAGGATCGGCTAGTCCCCCCTGCGTGCTGTTGATCCTA
CTGCCGCAACCCTCGGTCCGATCTGATCTTAGACTAGGAATAAACTTCGTATGCATAAGTCAACC
CACGAAACGAGCGTACAGGCGCTGACCCAGCCGAAGAGGCATAATACGCAAGTCGACGATTGGCT
CGATCCCCCTCTACATGCTGTCGGTCCCACTGCCACAACCCTCGGTCCGACTGGGGCTTAGACAT
GGAACGAACTCCCTATGCCTAAGCCAACCCACGAAATAGGCGTGCAGGCACTCAGCCAGCCAGAG
AGGCAGAATGCGCAAGCTGGGGATTAGCCTGGTCCCTCCTGCGTGCTGCCGATCCTGCTACCGCA
ACCCTCGGTCAGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTC
TGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGTGCTCAGCTGGCCGGAGAGGCATAATGC
GCAAGCCGAGGATCAGCCCGATCCCCCTCTGCGTGCTGTCAATCCCGCTGCAGGTCCTGCTGCCA
CAACCCTTGGTCCAGCTGGGT
Found at i:32507583 original size:159 final size:158
Alignment explanation
Indices: 32507182--32507586 Score: 413
Period size: 158 Copynumber: 2.6 Consensus size: 158
32507172 GCTGGTCCTG
* *
32507182 CTGCCACAACCCTCGGTCCGGCTGGGTCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
1 CTGCCACAACCTTCGGTCCGACTGGGTCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
* ** * **
32507247 CATGAAACGAGCGTACGGGCACTCAGTCAACCGAAGAGGCAGAATGCGCAAGTCGGGGATCGGCC
66 CATGAAACGAGCGTACAGGCACTCACCCAACCGAAGAGGCAGAATACGCAAGTCGACGATCGGCC
* * * * * **
32507312 TAGTCCCCCCTGCGTGTTGTTGATCTTA
131 GAGTCCCCCCTACATGCTGTCGATCCCA
* * * ** * *
32507340 CTGCCTCAACCCTT-GGTCCGATCT-GATCTTAGAC-TAGGAATAAACTTTGTATGCATAAGTCA
1 CTGCCACAA-CCTTCGGTCCGA-CTGGGTCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCA
* * * * * *
32507402 ACCCATGAAACGAGCGTACAGGCGCTGACCCGACCGAAGAGGCATAATACGTAAGTCGACGATTG
63 ACCCATGAAACGAGCGTACAGGCACTCACCCAACCGAAGAGGCAGAATACGCAAGTCGACGATCG
*
32507467 GCTCGA-TCCCCCTCTACATGCTGTCGGTCCCA
128 GC-CGAGTCCCCC-CTACATGCTGTCGATCCCA
* * *
32507499 CTGCCACAACCTTCGGTCCGACTGGGGCTTAGACATGGAACGAACTCCCTATGCCTAAGCCAACC
1 CTGCCACAACCTTCGGTCCGACTGGGTCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
* * * *
32507564 CACGAAATGGGCGTGCAGGCACT
66 CATGAAACGAGCGTACAGGCACT
32507587 TAGCCAGCCA
Statistics
Matches: 195, Mismatches: 44, Indels: 15
0.77 0.17 0.06
Matches are distributed among these distances:
157 1 0.01
158 111 0.57
159 82 0.42
160 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.25, T:0.20
Consensus pattern (158 bp):
CTGCCACAACCTTCGGTCCGACTGGGTCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
CATGAAACGAGCGTACAGGCACTCACCCAACCGAAGAGGCAGAATACGCAAGTCGACGATCGGCC
GAGTCCCCCCTACATGCTGTCGATCCCA
Found at i:32507720 original size:26 final size:26
Alignment explanation
Indices: 32507684--32507736 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
32507674 CAGGTCCGAT
*
32507684 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
32507710 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
32507736 C
1 C
32507737 CTATGTCAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:32510587 original size:159 final size:158
Alignment explanation
Indices: 32510232--32510700 Score: 381
Period size: 159 Copynumber: 3.0 Consensus size: 158
32510222 CCCTCAGTTT
* * ** * * * *
32510232 GACTAGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCATGCGAG
1 GACTGGGGCTTAGACAAGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCAAG
* * * * * * * * * * * *
32510297 CGCTGA-ACTGATCGAAGAGGTAGAATGCGCAAGTCGAGGATCAGCCCGATCCCCCCTGCGTGCT
66 CGCTCAGCCGGCT-GGAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGGTCCCCCCTACGTGCT
*** * * ** * *
32510361 GTTGATCCTGCTACCGTAACCCTTGGTCT
130 ACCGATCATGCTGCCAAAACCCTTGATCA
* * ** * * * * *
32510390 G-GTCAGATCTTAGACTAGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCAA
1 GACT-GGGGCTTAGACAAGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCAA
* * * * * * * **
32510454 GTGTTGAGCCAG-TCGGAGAGGCATAATGCGCAAGTCGGGGATCGGC-CTGGTCCCTCTCTGTGT
65 GCGCTCAGCCGGCT-GGAGAGGCAGAATGCGCAAGCCGGGGATCGGCTC-GGTCCC-CCCTACGT
*
32510517 GCTACCGATC-TCGCTGCCATAACCCTTGATCA
127 GCTACCGATCAT-GCTGCCAAAACCCTTGATCA
* **
32510549 GACTGGGGCTTAGACAAGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGG
1 GACTGGGGCTTAGACAAGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCAAG
*
32510614 CGCTCAGCCGGCTGGAGAGGCAGAATGCGCAAGCCGGGGATTGGCTCGGTCCCCCCTACGTGCTA
66 CGCTCAGCCGGCTGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGGTCCCCCCTACGTGCTA
32510679 CCGATCATGCTGCCAAAACCCT
131 CCGATCATGCTGCCAAAACCCT
32510701 CGGTCTGGTC
Statistics
Matches: 249, Mismatches: 53, Indels: 18
0.78 0.17 0.06
Matches are distributed among these distances:
157 2 0.01
158 119 0.48
159 125 0.50
160 3 0.01
ACGTcount: A:0.24, C:0.28, G:0.28, T:0.20
Consensus pattern (158 bp):
GACTGGGGCTTAGACAAGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCAAG
CGCTCAGCCGGCTGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGGTCCCCCCTACGTGCTA
CCGATCATGCTGCCAAAACCCTTGATCA
Done.