Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 355 of 402
Found at i:32510751 original size:26 final size:26
Alignment explanation
Indices: 32510715--32510767 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
32510705 CTGGTCCGAT
*
32510715 CTTAGATTGGGGATGAACTCCATATG
1 CTTAGACTGGGGATGAACTCCATATG
*
32510741 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCATATG
32510767 C
1 C
32510768 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCATATG
Found at i:32511024 original size:343 final size:340
Alignment explanation
Indices: 32510398--32511523 Score: 1387
Period size: 343 Copynumber: 3.3 Consensus size: 340
32510388 CTGGTCAGAT
* * * ** * *
32510398 CTTAGACTAGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCAAGTGTTGAGC
1 CTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGC
* * * * * * *
32510463 CAGTCGGAGAGGCATAATGCGCAAGTCGGGGATCGGCCTGGTCCCTCTCTGTGTGCTACCGATCT
66 CAGCCGGAGAGGCATAATGCGCAAGTCGGGGATC-GCCTAGTCCCCCTCTGCGTGATGCCGATCC
* * *
32510528 CGCTGCCATAACCCTTGATCAGACTGGGGCTTAGACAAGGAATGAACTCCCTATGCCTAAGCCAA
130 CGCTGCCATAACCCTAGATCAGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
* * * *
32510593 CCCATGAAACGGGCGTGCGGGCGCTCAGCCGG-CTGGAGAGGCAGAATGCGCAAGCCGGGGATTG
195 CCCATGAAACGGGCGTGCGGGCGCTCAGCCGGTC-AGAGAGGAAGAATGCGCAAGCAGGGGATCG
* * * * ** *
32510657 GCTCGGTCCCCCCTACGTGCTACCGATCATGCTGCCAAAACCCTCGGTCTGGTCCGATCTTAGAT
259 AC-CCGT-CCCCCTGCGTGCTACCGATCCTGCTGCCGCAACCCTCAGTCTGGTCCGATCTTAGAT
* *
32510722 TGGGGATGAACTCCATATG
322 TGGGAATGAACTCCGTATG
* * * **
32510741 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGTGTGTGGGCACTCAGC
1 CTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGC
*
32510806 CAGCCGGAGAGGCATAATGCGCAAGTCGGGGATCAGCCTAGTCCCCCTCTGCGTGATGCCTATCC
66 CAGCCGGAGAGGCATAATGCGCAAGTCGGGGATC-GCCTAGTCCCCCTCTGCGTGATGCCGATCC
* * * * *
32510871 CGCTGTCATAACCCTAGGTCTGGCTAGCGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
130 CGCTGCCATAACCCTAGATCAGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
* * *
32510936 CTCGTGAAACGAGCGTGCGGGCGCTCAGCCGGTCAGAGAGGAAGAATGCGCAAGCAGGGGATCGA
195 CCCATGAAACGGGCGTGCGGGCGCTCAGCCGGTCAGAGAGGAAGAATGCGCAAGCAGGGGATCGA
* ** *
32511001 CCCAGTCCCTCCTGCGTGCTACCGATCCTGCTACCGCAACCCTTTGTCTGGTCCGATCTTAGACT
260 CCC-GTCCC-CCTGCGTGCTACCGATCCTGCTGCCGCAACCCTCAGTCTGGTCCGATCTTAGATT
32511066 GGGAATGAACTCCGTATG
323 GGGAATGAACTCCGTATG
32511084 CTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGC
1 CTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGC
* * * * * * * * * *
32511149 C-GACTGGAGAGGCAGAATGCGCAAGCCAGGGATCGACTCGATCTCCCTGTGCGCGTTGCCGATC
66 CAG-CCGGAGAGGCATAATGCGCAAGTCGGGGATCGCCTAG-TCCCCCTCTGCGTGATGCCGATC
* * *
32511213 CCGCTGCCACAACCCTCGATCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
129 CCGCTGCCATAACCCTAGATCAGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
* * * * * *
32511278 ACCCACGAAATGGGCATGCGGGCACTCAGCCGGTCAGAGAGGAAGAATGCGTAAGCTGGGGATCG
194 ACCCATGAAACGGGCGTGCGGGCGCTCAGCCGGTCAGAGAGGAAGAATGCGCAAGCAGGGGATCG
** * * *
32511343 ACCCGATCCCCCTTGCGTGCTGTCGATCCTGCAGCCGCAACCCTCAGTCTGATCTGATCTTAGAT
259 ACCCG-TCCCCC-TGCGTGCTACCGATCCTGCTGCCGCAACCCTCAGTCTGGTCCGATCTTAGAT
*
32511408 TGAGAATGAACTCCGTATG
322 TGGGAATGAACTCCGTATG
* * * *
32511427 CTTAGACT-GGTGATGAACTCCGTATGCCTAAGTCAACCCAAGAAACAAGCGTGCGGATGCTCAA
1 CTTAGACTAGG-GATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAG
* * *
32511491 TC-GACCGGAGAGGCAGAATGCGTAAGTCGGGGA
65 CCAG-CCGGAGAGGCATAATGCGCAAGTCGGGGA
32511524 CCGACTCGGT
Statistics
Matches: 676, Mismatches: 99, Indels: 16
0.85 0.13 0.02
Matches are distributed among these distances:
342 14 0.02
343 661 0.98
344 1 0.00
ACGTcount: A:0.24, C:0.28, G:0.28, T:0.20
Consensus pattern (340 bp):
CTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGC
CAGCCGGAGAGGCATAATGCGCAAGTCGGGGATCGCCTAGTCCCCCTCTGCGTGATGCCGATCCC
GCTGCCATAACCCTAGATCAGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
CCATGAAACGGGCGTGCGGGCGCTCAGCCGGTCAGAGAGGAAGAATGCGCAAGCAGGGGATCGAC
CCGTCCCCCTGCGTGCTACCGATCCTGCTGCCGCAACCCTCAGTCTGGTCCGATCTTAGATTGGG
AATGAACTCCGTATG
Found at i:32511087 original size:26 final size:26
Alignment explanation
Indices: 32511058--32511110 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
32511048 CTGGTCCGAT
32511058 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
32511084 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
32511110 C
1 C
32511111 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:32511635 original size:26 final size:26
Alignment explanation
Indices: 32511597--32511647 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
32511587 TCATTCTGAT
32511597 CTTAGACTGGGAATGAACTCCGTATC
1 CTTAGACTGGGAATGAACTCCGTATC
32511623 CTTAGACAT-GGAATGAACTCCGTAT
1 CTTAGAC-TGGGAATGAACTCCGTAT
32511648 GCCTAAGCCA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATC
Found at i:32512130 original size:26 final size:26
Alignment explanation
Indices: 32512101--32512153 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
32512091 GTCTGATCTC
* *
32512101 AGACTGGGAATGAACTCCGTATGCTT
1 AGACTGGGAATAAACTACGTATGCTT
*
32512127 AGACTGGGGATAAACTACGTATGCTT
1 AGACTGGGAATAAACTACGTATGCTT
32512153 A
1 A
32512154 AGTCAACCCA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.26
Consensus pattern (26 bp):
AGACTGGGAATAAACTACGTATGCTT
Found at i:32512915 original size:159 final size:158
Alignment explanation
Indices: 32512606--32512965 Score: 343
Period size: 159 Copynumber: 2.3 Consensus size: 158
32512596 ACCGACCTGG
* * ** * * **
32512606 TCCCCCCTACGTGCTGTCGATC-CTGCTTCCGTGACCCTCAGTCCGG-TCCGATCTTAGACTGGG
1 TCCCCCCTACGTGCTGTCGATCTC-ACTACCGCAACCCTCGGTCCGGCT-AGGGCTTAGACTGGG
** * * * * *
32512669 AATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGTTGAGCCGACCAGAGAG
64 AATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCGCTCAACCGACCAGAGAG
* * *
32512734 GCATAAAGCATAAGCTGAGGATCGACCCAA
129 ACAGAAAGCACAAGCTGAGGATCGACCCAA
* * *
32512764 TCCCCCTCTACGTGCTG-CTGATCTCATTGCCTCAACCCTCGGTCCGGCTAGGGCTTAGACAT-G
1 TCCCCC-CTACGTGCTGTC-GATCTCACTACCGCAACCCTCGGTCCGGCTAGGGCTTAGAC-TGG
* * * *
32512827 GAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATGCGGGTGCTCAACCGATCGGAGA
63 GAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCGCTCAACCGACCAGAGA
* * * **
32512892 GACAGAATGCGCAAG-TCGGGGATCGACCCGG
128 GACAGAAAGCACAAGCT-GAGGATCGACCCAA
* *
32512923 TCCCCCCTGCGTGCTGTCGATCTTACTACCGCAACCCTCGGTC
1 TCCCCCCTACGTGCTGTCGATCTCACTACCGCAACCCTCGGTC
32512966 TGATTCGATC
Statistics
Matches: 161, Mismatches: 34, Indels: 14
0.77 0.16 0.07
Matches are distributed among these distances:
158 38 0.24
159 120 0.75
160 3 0.02
ACGTcount: A:0.22, C:0.32, G:0.26, T:0.20
Consensus pattern (158 bp):
TCCCCCCTACGTGCTGTCGATCTCACTACCGCAACCCTCGGTCCGGCTAGGGCTTAGACTGGGAA
TGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCGCTCAACCGACCAGAGAGAC
AGAAAGCACAAGCTGAGGATCGACCCAA
Found at i:32513370 original size:26 final size:26
Alignment explanation
Indices: 32513334--32513386 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
32513324 TCGGTCTGAT
*
32513334 CTTAGAGTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
32513360 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
32513386 C
1 C
32513387 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:32513916 original size:159 final size:159
Alignment explanation
Indices: 32513516--32513924 Score: 447
Period size: 158 Copynumber: 2.6 Consensus size: 159
32513506 TGCTGGTCCT
* * * *
32513516 GCTACCACAACCCTCGATCCGGC-TAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
1 GCTACCACAACCCTCGGTCTGGCTTA-AGCTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
32513580 CCCACGAAATGAG-CGTGCAGGCACTCAGTCGACTGGAGAGGCAGAATGCGCAAGCAGAGGATCG
65 CCCATGAAATGAGTCGTGCGGGCGCTCAGTCGACCGGAGAGGCAGAATGCGCAAGCAGAGGATCG
*
32513644 GCCCGATCCCCCTTACGTGCTGTCGATCCT
130 GCCCGATCCCCCTTACGTGCTGTCGATCCC
* ** * * * * *
32513674 GCTACCGCAACCCTTTGTCTGG-TCTAATCTTAGACTGGGAATGAACTTCGTATCCCTAAGTCAA
1 GCTACCACAACCCTCGGTCTGGCT-TAAGCTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * *
32513738 CCCATGAAACGAGT-GTGCGGGCGTTGAG-CTGGCCGGAGAGGC-GTAATGGGCAAGTC-GGGGA
65 CCCATGAAATGAGTCGTGCGGGCGCTCAGTC-GACCGGAGAGGCAG-AATGCGCAAG-CAGAGGA
* *
32513799 TTGGCCCGATCCCCCTCTGCGTGCTGTCGATCCC
127 TCGGCCCGATCCCCCT-TACGTGCTGTCGATCCC
* * *
32513833 GCTACCATAACCCTCGGTCTGGCTTCAGCTTAGACTTGGAATGAACTCCCTATGCCTAAGCCAAC
1 GCTACCACAACCCTCGGTCTGGCTTAAGCTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAAC
*
32513898 CCATGAAATG-GTCATGCGGGCGCTCAG
66 CCATGAAATGAGTCGTGCGGGCGCTCAG
32513925 CCGGTCAGAG
Statistics
Matches: 202, Mismatches: 40, Indels: 17
0.78 0.15 0.07
Matches are distributed among these distances:
157 2 0.01
158 109 0.54
159 90 0.45
160 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.21
Consensus pattern (159 bp):
GCTACCACAACCCTCGGTCTGGCTTAAGCTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAAC
CCATGAAATGAGTCGTGCGGGCGCTCAGTCGACCGGAGAGGCAGAATGCGCAAGCAGAGGATCGG
CCCGATCCCCCTTACGTGCTGTCGATCCC
Found at i:32513957 original size:159 final size:159
Alignment explanation
Indices: 32513516--32513973 Score: 462
Period size: 159 Copynumber: 2.9 Consensus size: 159
32513506 TGCTGGTCCT
* * * *
32513516 GCTACCACAACCCTCGATCCGGC-TAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
1 GCTACCACAACCCTCGGTCTGGCTTA-AGCTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * * *
32513580 CCCACGAAATGAG-CGTGCAGGCACTCAGTC-GACTGGAGAGGCAGAATGCGCAAGCAGAGGATC
65 CCCATGAAATGAGTCGTGCGGGCGCTCAGCCGGAC-GGAGAGGCGGAATGCGCAAGCTGGGGATT
*
32513643 GGCCCGATCCCCCTTACGTGCTGTCGATCCT
129 GGCCCGATCCCCCTTACGTGCTGTCGATCCC
* ** * * * * *
32513674 GCTACCGCAACCCTTTGTCTGG-TCTAATCTTAGACTGGGAATGAACTTCGTATCCCTAAGTCAA
1 GCTACCACAACCCTCGGTCTGGCT-TAAGCTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * *
32513738 CCCATGAAACGAGT-GTGCGGGCGTTGAGCTGGCCGGAGAGGCGTAATGGGCAAG-TCGGGGATT
65 CCCATGAAATGAGTCGTGCGGGCGCTCAGCCGGACGGAGAGGCGGAATGCGCAAGCT-GGGGATT
*
32513801 GGCCCGATCCCCCTCTGCGTGCTGTCGATCCC
129 GGCCCGATCCCCCT-TACGTGCTGTCGATCCC
* * *
32513833 GCTACCATAACCCTCGGTCTGGCTTCAGCTTAGACTTGGAATGAACTCCCTATGCCTAAGCCAAC
1 GCTACCACAACCCTCGGTCTGGCTTAAGCTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * * *
32513898 CCATGAAATG-GTCATGCGGGCGCTCAGCCGGTCAGAGAGGTGGAATACGCAAGCTGGGGAGTGG
66 CCATGAAATGAGTCGTGCGGGCGCTCAGCCGGACGGAGAGGCGGAATGCGCAAGCTGGGGATTGG
* *
32513962 CTCGGTCCCCCT
131 CCCGATCCCCCT
32513974 GCGTACTGCT
Statistics
Matches: 237, Mismatches: 54, Indels: 17
0.77 0.18 0.06
Matches are distributed among these distances:
158 107 0.45
159 128 0.54
160 2 0.01
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.20
Consensus pattern (159 bp):
GCTACCACAACCCTCGGTCTGGCTTAAGCTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAAC
CCATGAAATGAGTCGTGCGGGCGCTCAGCCGGACGGAGAGGCGGAATGCGCAAGCTGGGGATTGG
CCCGATCCCCCTTACGTGCTGTCGATCCC
Found at i:32515124 original size:26 final size:26
Alignment explanation
Indices: 32515095--32515147 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
32515085 CCGATTAGAT
*
32515095 CTTAGACTAGGAATGAACTCCGTATG
1 CTTACACTAGGAATGAACTCCGTATG
* * **
32515121 CTTACACTGGGGATTTACTCCGTATG
1 CTTACACTAGGAATGAACTCCGTATG
32515147 C
1 C
32515148 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTACACTAGGAATGAACTCCGTATG
Found at i:32515268 original size:184 final size:184
Alignment explanation
Indices: 32514953--32515305 Score: 415
Period size: 184 Copynumber: 1.9 Consensus size: 184
32514943 CATGGAATGA
* * * * *
32514953 ACTCCCTATGCCTAAGCCAACCAACGAAACGAGCGTGCGGGTGCTCAGTCGGCCGGATAGGTAGA
1 ACTCCCTATGCCTAAGCCAACCAACGAAACGAGCGTGCAGGCGCTCAGCCGGCCGAAGAGGTAGA
* * * ** * * * * *
32515018 TTGTGTAAACTGAGGAACGATTCGGTCCCCCCTGCGTGCTGTCTATCCTATTGCCGCAACCCTCG
66 ATGCGTAAACAGAGGAACGACCCGATCCCCCCTGCGTGCTGTCGATCCTACTACCACAACCCTCG
* *
32515083 GTCC-GAT-TAGATCTTAGACTAGGAATGAACTCCGTATGCTTACACTGGGGATTT
131 GTCCAG-TCT-GAACTCAGACTAGGAATGAACTCCGTATGCTTACACTGGGGATTT
* * * *
32515137 ACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCAGGCGCTCAGCCGGCCGAAGAGGTAGA
1 ACTCCCTATGCCTAAGCCAACCAACGAAACGAGCGTGCAGGCGCTCAGCCGGCCGAAGAGGTAGA
* * * *
32515202 ATGCGTAAGTCAG-GGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCCTGCTACCACAACCCTC
66 ATGCGTAA-ACAGAGGAACGACCCGATCCCCCCTGCGTGCTGTCGATCCTACTACCACAACCCTC
* *
32515266 GGTCCAGTCTGAACTCAGACTGGGAATGAACTCTGTATGC
130 GGTCCAGTCTGAACTCAGACTAGGAATGAACTCCGTATGC
32515306 ATAAGTCAAC
Statistics
Matches: 139, Mismatches: 27, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
184 135 0.97
185 4 0.03
ACGTcount: A:0.23, C:0.29, G:0.26, T:0.22
Consensus pattern (184 bp):
ACTCCCTATGCCTAAGCCAACCAACGAAACGAGCGTGCAGGCGCTCAGCCGGCCGAAGAGGTAGA
ATGCGTAAACAGAGGAACGACCCGATCCCCCCTGCGTGCTGTCGATCCTACTACCACAACCCTCG
GTCCAGTCTGAACTCAGACTAGGAATGAACTCCGTATGCTTACACTGGGGATTT
Found at i:32515417 original size:158 final size:158
Alignment explanation
Indices: 32515137--32515522 Score: 465
Period size: 158 Copynumber: 2.4 Consensus size: 158
32515127 CTGGGGATTT
* *
32515137 ACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCAGGCGCTCAGCCGGCCGAAGAGGTAGA
1 ACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCGAAGAGGCAGA
* *
32515202 ATGCGTAAGTCAGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCCTGCTACCACAACCCTCG
66 ATGCGCAAGTCAGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCCCGCTACCACAACCCTCG
*
32515267 GTCCAGTCT-GAACTCAGAC-TGGGAATGA
131 GTCC-GACTGGAACTCAGACAT-GGAATGA
* * * * * * *
32515295 ACTCTGTATGCATAAGTCAACCCACGAAATGAGCGTGCGGGTGCTGAGCTGACCGAAGAGGCATA
1 ACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCGAAGAGGCAGA
* * * * * *
32515360 ATGCGCAAG-CGGGGATTGGCTCGGTCTCCCTCTGCGTGCTGTCAGA-CCCGCTGCCACAACCCT
66 ATGCGCAAGTCAGGGATCGGCCCGATC-CCCCCTGCGTGCTGTC-GATCCCGCTACCACAACCCT
** *
32515423 CGGTCCGACTGGGGCTTAGACATGGAATGA
129 CGGTCCGACTGGAACTCAGACATGGAATGA
* * * * * *
32515453 ACTCCCTATGCCTAAGCCAACCCATGAAATGGGTGTGCGGGCGCTCAGCCGGTCGAAGAGGCAGA
1 ACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCGAAGAGGCAGA
32515518 ATGCG
66 ATGCG
32515523 TAACTGGGGA
Statistics
Matches: 190, Mismatches: 34, Indels: 8
0.82 0.15 0.03
Matches are distributed among these distances:
157 16 0.08
158 171 0.90
159 3 0.02
ACGTcount: A:0.23, C:0.30, G:0.29, T:0.18
Consensus pattern (158 bp):
ACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCGAAGAGGCAGA
ATGCGCAAGTCAGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCCCGCTACCACAACCCTCG
GTCCGACTGGAACTCAGACATGGAATGA
Found at i:32515443 original size:342 final size:343
Alignment explanation
Indices: 32514756--32515463 Score: 725
Period size: 342 Copynumber: 2.1 Consensus size: 343
32514746 CAAACTCTTT
* * * *
32514756 GACTGGGAATGAACTCCGCATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCATGA
1 GACTAGGAATGAACTCCGTATGCTTACACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGA
* * * *
32514821 AACAACCGCGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCACAAGCCGAGGATCGGCCCGATC
66 AACAACCGCGCAGGCGCTCAGCCGGCCGAAGAGGCAGAATGCACAAGCAGAGGATCGGCCCGATC
* ** **
32514886 CCCCTCTACGTGCTATCGGTCCCGCTACCACAACCCCCAGTCCAGTTGGGGCTTTGACATGGAAT
131 CCCCTCTACGTGCTATCGATCCCGCTACCACAACCCCCAGTCCAGTTGGAACTCAGACATGGAAT
* * * * *
32514951 GAACTCCCTATGCCTAAGCCAACCAACGAAACGAGCGTGCGGGTGCTCAGTCGGCCGGATAGGTA
196 GAACTCCCTATGCATAAGCCAACCAACGAAACGAGCGTGCGGGTGCTCAGTCGACCGAAGAGGCA
* * * * * * * *
32515016 GATTGTGTAAACTGAGGAACGATTCGGTCCCCCCTGCGTGCTGTCTATCCTATTGCCGCAACCCT
261 GAATGCGCAAACTGAGGAACGACTCGGTCCCCCCTGCGTGCTGTCTAACCCACTGCCACAACCCT
* *
32515081 CGGTCCGATTAGATCTTA
326 CGGTCCGACTAGAGCTTA
* **
32515099 GACTAGGAATGAACTCCGTATGCTTACAC-TGGGGATTTACTCCGTATGCCTAAG-TCAACCCAC
1 GACTAGGAATGAACTCCGTATGCTTACACAT-GGAATGAACTCCGTATGCCTAAGCT-AACCCAC
** * * * **
32515162 GAAATGAGCGTGCAGGCGCTCAGCCGGCCGAAGAGGTAGAATGCGTAAGTCAG-GGATCGGCCCG
64 GAAACAACCGCGCAGGCGCTCAGCCGGCCGAAGAGGCAGAATGCACAAG-CAGAGGATCGGCCCG
* * * * *
32515226 ATCCCCC-CTGCGTGCTGTCGATCCTGCTACCACAACCCTCGGTCCAGTCT-GAACTCAGAC-TG
128 ATCCCCCTCTACGTGCTATCGATCCCGCTACCACAACCCCCAGTCCAGT-TGGAACTCAGACAT-
** * * * *
32515288 GGAATGAACTCTGTATGCATAAGTCAACCCACGAAATGAGCGTGCGGGTGCTGAG-CTGACCGAA
191 GGAATGAACTCCCTATGCATAAGCCAACCAACGAAACGAGCGTGCGGGTGCTCAGTC-GACCGAA
* * * ** * * *
32515352 GAGGCATAATGCGCAAGC-GGGGATTGGCTCGGTCTCCCTCTGCGTGCTGTC-AGACCCGCTGCC
255 GAGGCAGAATGCGCAAACTGAGGAACGACTCGGTC-CCCCCTGCGTGCTGTCTA-ACCCACTGCC
* *
32515415 ACAACCCTCGGTCCGACTGGGGCTTA
318 ACAACCCTCGGTCCGACTAGAGCTTA
*
32515441 GAC-ATGGAATGAACTCCCTATGC
1 GACTA-GGAATGAACTCCGTATGC
32515464 CTAAGCCAAC
Statistics
Matches: 296, Mismatches: 60, Indels: 19
0.79 0.16 0.05
Matches are distributed among these distances:
341 15 0.05
342 169 0.57
343 110 0.37
344 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (343 bp):
GACTAGGAATGAACTCCGTATGCTTACACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGA
AACAACCGCGCAGGCGCTCAGCCGGCCGAAGAGGCAGAATGCACAAGCAGAGGATCGGCCCGATC
CCCCTCTACGTGCTATCGATCCCGCTACCACAACCCCCAGTCCAGTTGGAACTCAGACATGGAAT
GAACTCCCTATGCATAAGCCAACCAACGAAACGAGCGTGCGGGTGCTCAGTCGACCGAAGAGGCA
GAATGCGCAAACTGAGGAACGACTCGGTCCCCCCTGCGTGCTGTCTAACCCACTGCCACAACCCT
CGGTCCGACTAGAGCTTA
Found at i:32516426 original size:26 final size:26
Alignment explanation
Indices: 32516376--32516427 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
32516366 CGATCCAAAT
**
32516376 TTAGACTGGGAATGAACTTTATATGC
1 TTAGACTGGGAATGAACTCCATATGC
* *
32516402 TTAGACTGGGGATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCATATGC
32516428 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGC
Found at i:32517168 original size:159 final size:157
Alignment explanation
Indices: 32516768--32517213 Score: 463
Period size: 159 Copynumber: 2.8 Consensus size: 157
32516758 AACTCCGTAT
* * *
32516768 GCTTAGACATGGAATGAACTCCGT-TGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAG
** **
32516832 CAGGTCGGAGAGGCAGAATGCACAAGTCGAGGATCGGCCCGATCCCCCCTGCGTGCTATCATCCT
66 CAGACCAAAGAGGCAGAATGCACAAGTCGAGGATCGGCCCGATCCCCCCTGCGTGCTATCATCCT
**
32516897 ACTGCCGTAACACTCGATCCAGTCTGA
131 ACTGCCACAACACTCGATCCAGTCTGA
* * * * * *
32516924 TCTTACAC-TAGGAATAAACTTCGC-ATGCCTAAGGCAACCCACGAAACGAGCATGCGGGCGCTG
1 GCTTAGACAT-GGAATGAAC-TCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTC
* * * *
32516987 AGCAGACCGAAA-AGGCATAATGCACAAGTCGAGGATCGGCCCGGTCCCCTTCTGCGTGCTGTCG
64 AGCAGACC-AAAGAGGCAGAATGCACAAGTCGAGGATCGGCCCGATCCCC-CCTGCGTGCTATC-
* * * ** *
32517051 GTCCCT-CTGCCACAACCCTCGGTCTGGT-TGGG
126 AT-CCTACTGCCACAACACTCGATCCAGTCT-GA
* * * *
32517083 GCTTAGACATGGAATGAACTCCCTATGCATAAGCCAACCCATGAAACGGGCATGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAG
* * * * **
32517148 CCGACCAAAGAGACAGAATGCGCAAGTCGGGGATCGGCCCGATCCCCCCTGAATGCTATCGATCC
66 CAGACCAAAGAGGCAGAATGCACAAGTCGAGGATCGGCCCGATCCCCCCTGCGTGCTATC-ATCC
32517213 T
130 T
32517214 GCTGTCGCAA
Statistics
Matches: 233, Mismatches: 46, Indels: 21
0.78 0.15 0.07
Matches are distributed among these distances:
155 1 0.00
156 14 0.06
157 80 0.34
158 30 0.13
159 104 0.45
160 4 0.02
ACGTcount: A:0.25, C:0.31, G:0.26, T:0.18
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAG
CAGACCAAAGAGGCAGAATGCACAAGTCGAGGATCGGCCCGATCCCCCCTGCGTGCTATCATCCT
ACTGCCACAACACTCGATCCAGTCTGA
Found at i:32518350 original size:26 final size:26
Alignment explanation
Indices: 32518312--32518363 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
32518302 CAGGTCTGAT
32518312 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
32518338 CTTAGACAT-GGAATGAACTTCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
32518364 GCTAAGCCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:32518838 original size:158 final size:159
Alignment explanation
Indices: 32518475--32518841 Score: 370
Period size: 159 Copynumber: 2.3 Consensus size: 159
32518465 CTGCTACCGT
* * * *
32518475 AACCCTTGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
1 AACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAAGTCAACCCACGAAA
** * * * * *
32518540 CGAGTGTGCGGGCGCTGAGCCAGCCGAAGAGGTATAATGCGCAAGCCGGGGACTGACCCGATCCC
66 CGAGCATGCGGGCGCTCAGCCAGCCGAAGAGGCAAAATACGCAAGCCGGGGACAGACCCGATCCC
*
32518605 CCTCTATGTGCTGTTGATCCCACTACCAC
131 CCTCTATGTGCTGTCGATCCCACTACCAC
** * *
32518634 AACCCTCGGTCCAG-CTGGGGCTTAGACAT-GGAATGAACTCCCTATGCTTAAG-CTAACTCACG
1 AACCCTCGGTCCAGTCT-GATCTTAGAC-TGGGAATGAACTCCATATGCTTAAGTC-AACCCACG
* * * * * **
32518696 AAACGGGCATGCGGGTGCTCAGCCGGTCGGAGAGGCAAAATACAG-AAGTTGGGGATCAG-CCCG
63 AAACGAGCATGCGGGCGCTCAGCCAGCCGAAGAGGCAAAATAC-GCAAGCCGGGGA-CAGACCCG
* * ** *
32518759 GTCCCCC-CTGTGTGCTGTCGATCCTC-CTGTCGC
126 ATCCCCCTCTATGTGCTGTCGATCC-CACTACCAC
*
32518792 AACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTA
1 AACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTA
32518842 GACTGGGGAT
Statistics
Matches: 169, Mismatches: 31, Indels: 17
0.78 0.14 0.08
Matches are distributed among these distances:
157 1 0.01
158 62 0.37
159 102 0.60
160 4 0.02
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (159 bp):
AACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAAGTCAACCCACGAAA
CGAGCATGCGGGCGCTCAGCCAGCCGAAGAGGCAAAATACGCAAGCCGGGGACAGACCCGATCCC
CCTCTATGTGCTGTCGATCCCACTACCAC
Found at i:32518848 original size:26 final size:26
Alignment explanation
Indices: 32518812--32518864 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
32518802 CCGGTCTGAT
32518812 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
32518838 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
32518864 C
1 C
32518865 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:32519574 original size:159 final size:158
Alignment explanation
Indices: 32519217--32519719 Score: 381
Period size: 158 Copynumber: 3.2 Consensus size: 158
32519207 AACTCCGTAT
* * *
32519217 GCTTAGACATGAAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGAGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAAAGAGCGTGCGAGCGCTCAG
* * * *
32519282 TCGGCCGAAAAGGCAGAATGTGCAAGTCGGGGATTGGCCCGGTCCCCCCTACGTGCTGTCAATCC
66 CCGACCGAAAAGGCAGAATGCGCAAGTCGGGGATTAGCCCGGTCCCCCCTACGTGCTGTCAATCC
** * **
32519347 TGCTACCGTAACCTTCGATTTGGTCTAA
131 TGCTACCACAACCCTCGATCCGGTCTAA
* * * * * *
32519375 TCTTAGAC-TAGGAATGAACTCTGTATGCCTATGTCAACCCACAAAAAGAGCGTGCCG-GCGGTG
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAAAGAGCGTG-CGAGCGCTC
* * * * *
32519438 AGCCGACCGGAGAGGCATAATGCGCAAGTCGGGGATTAGCCCGGTCCCCCTTTGCGTGCTG-CAG
64 AGCCGACCGAAAAGGCAGAATGCGCAAGTCGGGGATTAGCCCGGTCCCCC-CTACGTGCTGTCA-
* * * **
32519502 GTCCTGCTGCCACAACCCTCGGTCCGG-CTGGG
127 ATCCTGCTACCACAACCCTCGATCCGGTCT-AA
* * * ** * * * *
32519534 GCTTAGACATGGAATGAACTCCCTATGCCTAAACCAACCCATGAAATCG-GGGTACGGGTGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA-CAAAAAGAGCGTGCGAGCGCTCA
* * * * * * * * * *
32519598 GCCGATCGAAAAGGTAGAATACGCAAGCCGTGGA-TCGACCCAGTCCCCCCTGCGTACTGTCGAT
65 GCCGACCGAAAAGGCAGAATGCGCAAGTCGGGGATTAG-CCCGGTCCCCCCTACGTGCTGTCAAT
* ** * * * **
32519662 CTTGCTGTCGCAACCCTCGGTCTGGTCCGA
129 CCTGCTACCACAACCCTCGATCCGGTCTAA
*
32519692 TCTTAGAC-TAGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
32519720 TTAGACTGGG
Statistics
Matches: 269, Mismatches: 64, Indels: 24
0.75 0.18 0.07
Matches are distributed among these distances:
157 2 0.01
158 155 0.58
159 107 0.40
160 5 0.02
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAAAGAGCGTGCGAGCGCTCAG
CCGACCGAAAAGGCAGAATGCGCAAGTCGGGGATTAGCCCGGTCCCCCCTACGTGCTGTCAATCC
TGCTACCACAACCCTCGATCCGGTCTAA
Found at i:32519722 original size:26 final size:26
Alignment explanation
Indices: 32519693--32519745 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
32519683 CTGGTCCGAT
32519693 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* * *
32519719 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
32519745 C
1 C
32519746 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:32519830 original size:881 final size:880
Alignment explanation
Indices: 32518108--32519988 Score: 2366
Period size: 881 Copynumber: 2.1 Consensus size: 880
32518098 CGTGCTGTCG
* * * *
32518108 GTCCCACTACCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAG
1 GTCCTACTGCCACAACCCTCGGTTCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAG
** * * * **
32518173 CCAACCCATGAAATAAGTGTGCGAGCGCTCAGTCGACCGAAGAGGCAGAATGCGTAAGTCGGGGA
66 CCAACCCATGAAACGAGCGTGCGGGCGCTCAGTCGACCGAAGAGGCAGAATGCGTAAGCCAAGGA
* * * * * * *
32518238 TCAGCCCGGTCCCCCCTTGCATGCTGTCGATCCTGCTACTGGTCCTACTGTCGCAACCCTCGGTC
131 TCAGCCCGATCCCCCCTTACATGCTATCGATCCTACTACTGGTACTACTGCCGCAACCCTCGATC
* * * * * *
32518303 AGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTTCGTATGGCTA
196 AGATCTGATCTAAGACTGGGAATAAACTCCGTATGCTTAGACATGAAATGAACTCCGTATGCCTA
* * *
32518368 AGCCAACCCACGAAACGAGCGTGCGAGCACTCAACCAACCGGAGAGGTAGAATTCATAAGTAGGG
261 AGCCAACCCACGAAACGAGCGTGCGAGCACTCAACCAACCGAAAAGGCAGAATTCA-AAGTAGGG
* * *
32518433 TATCGACCCGGTCCCCCTACATGCTGTCAATCCTGCTACCGTAACCCTTGGTCCAGTCCGATCTT
325 GATCGACCCGGTCCCCCTACATGCTGTCAATCCTGCTACCGTAACCCTTGATCCAGTCCAATCTT
* * * * *
32518498 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCGCTGAGCCAG
390 AGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAAAGAGCGTGCCGGCGCTGAGCCAG
* * **
32518563 CCGAAGAGGTATAATGCGCAAGCCGGGGACTGACCCGATCCCCCTCTATGTGCTGTTGATCCCAC
455 CCGAAGAGGCATAATGCGCAAGCCGGGGACTGACCCGATCCCCCTCTACGTGCTGCAGATCCCAC
* * * *
32518628 TACCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCTTAAGCTAACTC
520 TACCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAACCAACCC
* * * * **
32518693 ACGAAACGGGCATGCGGGTGCTCAGCCGGTCGGAGAGGCAAAATACAGAAGTTGGGGATCAGCCC
585 ACGAAACGGGCATACGGGTGCTCAGCCGATCGAAAAGGCAAAATACAGAAGCCGGGGATCAGCCC
* * * * *
32518758 GGTCCCCCCTGTGTGCTGTCGATCCTCCTGTCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGG
650 AGTCCCCCCTGCGTACTGTCGATCCTCCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTAGG
*
32518823 AATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACTAGC
715 AATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGC
* * * *
32518888 GTGCGGGCACTCAGCCAGTCGGAGAGGCCGGTCGGAGAGGCATAATGCGCAAGCTGGGGATCAGC
780 GTGCGGGCACTCAACCAGTCAGAGAGGCCGGTCGAAGAGGCATAATACGCAAGCTGGGGATCAGC
* ** *
32518953 CCAGTCTCCCTCTGTGTGTTGTCGATCTCGCTACC-
845 CCAGTCCCCCTCTGCATGTTGTCGATCTCACTACCA
* * *
32518988 GATCCTACTGCCACAACCCTCGGTTTGACTAGGGCTTAGACATGGAATGAACT-CGTATGCCTAA
1 G-TCCTACTGCCACAACCCTCGGTTCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAA
* * * *
32519052 GCCAACCCACGAAACGAGCATGCGGGCGCTCAATCGACCGAAGAGGTAGAATGCGTAAGCCAAGG
65 GCCAACCCATGAAACGAGCGTGCGGGCGCTCAGTCGACCGAAGAGGCAGAATGCGTAAGCCAAGG
* * * * * *
32519117 ATCGGCCCGAT-CCCCCTCTACGTGCTATCGATCTTACTGCTGGTATTGCTGCCGCAACCCTCGA
130 ATCAGCCCGATCCCCCCT-TACATGCTATCGATCCTACTACTGGTACTACTGCCGCAACCCTCGA
*
32519181 TCCA-ATTTGATCTAAGACTGGGAATAAACTCCGTATGCTTAGACATGAAATGAACTCCGTATGC
194 T-CAGATCTGATCTAAGACTGGGAATAAACTCCGTATGCTTAGACATGAAATGAACTCCGTATGC
* * ** **
32519245 CTAAGCCAACCCACGAAATGAGCGTGCGAGCGCTCAGTCGGCCGAAAAGGCAGAATGTGC-AAGT
258 CTAAGCCAACCCACGAAACGAGCGTGCGAGCACTCAACCAACCGAAAAGGCAGAAT-T-CAAAGT
* * * * *** *
32519309 CGGGGATTGGCCCGGTCCCCCCTACGTGCTGTCAATCCTGCTACCGTAA-CCTTCGATTTGGTCT
321 AGGGGATCGACCCGGT-CCCCCTACATGCTGTCAATCCTGCTACCGTAACCCTT-GATCCAGTCC
* * *
32519373 AATCTTAGACTAGGAATGAACTCTGTATGCCTATGTCAACCCACAAAAAGAGCGTGCCGGCGGTG
384 AATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAAAGAGCGTGCCGGCGCTG
* * * * * *
32519438 AGCC-GACCGGAGAGGCATAATGCGCAAGTCGGGGA-TTAGCCCGGTCCCCCTTTGCGTGCTGCA
449 AGCCAG-CCGAAGAGGCATAATGCGCAAGCCGGGGACTGA-CCCGATCCCCCTCTACGTGCTGCA
* ** * *
32519501 GGTCCTGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAA
512 GATCCCACTACCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAA
* * * * *
32519566 ACCAACCCATGAAATCGGG-GTACGGGTGCTCAGCCGATCGAAAAGGTAGAATAC-GCAAGCCGT
577 ACCAACCCACGAAA-CGGGCATACGGGTGCTCAGCCGATCGAAAAGGCAAAATACAG-AAGCCGG
* * *
32519629 GGATC-GACCCAGTCCCCCCTGCGTACTGTCGATCTTGCTGTCGCAACCCTCGGTCTGGTCCGAT
640 GGATCAG-CCCAGTCCCCCCTGCGTACTGTCGATCCTCCTGTCGCAACCCTCGGTCCGGTCCGAT
* *
32519693 CTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCC
704 CTTAGACTAGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCC
* * * * *
32519758 ATGAAACAAGCGTGCGGGCGCTCAATCGGTCAGAGAGGTCGGTCGAAGAGGCATAATACGCAAG-
769 ACGAAACAAGCGTGCGGGCACTCAACCAGTCAGAGAGGCCGGTCGAAGAGGCATAATACGCAAGC
* * **
32519822 TCGGGGATCAGCCCGGTCCCCCTCTGCATGTTGTCGATCTCATTGTCA
834 T-GGGGATCAGCCCAGTCCCCCTCTGCATGTTGTCGATCTCACTACCA
* * *
32519870 GTCCTGCTGCCACAACCCTCAGTTCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAGG
1 GTCCTACTGCCACAACCCTCGGTTCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAG
* * *
32519935 CCAACCCATGAAACGAGCGTGTC-GGCACTCAGCCGGCCGAAGAGGCAGAATGCG
66 CCAACCCATGAAACGAGCGTG-CGGGCGCTCAGTCGACCGAAGAGGCAGAATGCG
32519989 CAAGTCGGGG
Statistics
Matches: 848, Mismatches: 137, Indels: 30
0.84 0.13 0.03
Matches are distributed among these distances:
879 6 0.01
880 236 0.28
881 543 0.64
882 62 0.07
883 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.21
Consensus pattern (880 bp):
GTCCTACTGCCACAACCCTCGGTTCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAG
CCAACCCATGAAACGAGCGTGCGGGCGCTCAGTCGACCGAAGAGGCAGAATGCGTAAGCCAAGGA
TCAGCCCGATCCCCCCTTACATGCTATCGATCCTACTACTGGTACTACTGCCGCAACCCTCGATC
AGATCTGATCTAAGACTGGGAATAAACTCCGTATGCTTAGACATGAAATGAACTCCGTATGCCTA
AGCCAACCCACGAAACGAGCGTGCGAGCACTCAACCAACCGAAAAGGCAGAATTCAAAGTAGGGG
ATCGACCCGGTCCCCCTACATGCTGTCAATCCTGCTACCGTAACCCTTGATCCAGTCCAATCTTA
GACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAAAGAGCGTGCCGGCGCTGAGCCAGC
CGAAGAGGCATAATGCGCAAGCCGGGGACTGACCCGATCCCCCTCTACGTGCTGCAGATCCCACT
ACCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAACCAACCCA
CGAAACGGGCATACGGGTGCTCAGCCGATCGAAAAGGCAAAATACAGAAGCCGGGGATCAGCCCA
GTCCCCCCTGCGTACTGTCGATCCTCCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTAGGA
ATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCG
TGCGGGCACTCAACCAGTCAGAGAGGCCGGTCGAAGAGGCATAATACGCAAGCTGGGGATCAGCC
CAGTCCCCCTCTGCATGTTGTCGATCTCACTACCA
Found at i:32520186 original size:698 final size:685
Alignment explanation
Indices: 32519217--32520480 Score: 1674
Period size: 698 Copynumber: 1.8 Consensus size: 685
32519207 AACTCCGTAT
* *
32519217 GCTTAGACATGAAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGAGCGCTCAG
1 GCTTAGACATGAAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCACTCAG
* * * * *
32519282 TCGGCCGAAAAGGCAGAATGTGCAAGTCGGGGATTGGCCCGGTCCCCCCTACGTGCTGTCAATCC
66 CCGGCCGAAAAGGCAGAATGCGCAAGTCGGGGATCGGCCCGGTCCCCCCTACGGGCTGCCAATCC
* * ** *
32519347 TGCTACCGTAACCTTCGATTTGGTCTAATCTTAGACTAGGAATGAACTCTGTATGCCTATGTCAA
131 TGCTACCCTAACCCTCGATCCGGTCTAATCTTAGACTAGGAATGAACTCTGTATGCCTAAGTCAA
* * * * * * * *
32519412 CCCACAAAAAGAGCGTGCCGGCGGTGAGCCGACCGGAGAGGCATAATGCGCAAGTCGGGGATTAG
196 CCCACAAAAAGAGCATACCGGCGCTGAGCCGACCGAAGAGGCATAATGCACAAGCCAGGGATCAG
* * * * *
32519477 CCCGGTCCCCCTTTGCGTGCTG-CAGGTCCTGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGA
261 CCCGATCCCCCTCTACGTGCTGTC-GGTCCCGCTGCCACAACCCTCGGTCCAGCTGGGGCTTAGA
* * *
32519541 CATGGAATGAACTCCCTATGCCTAAACCAACCCATGAAATCGGG-GTACGGGTGCTCAGCC-GAT
325 CATGGAATGAACTCCCTATGCCTAAACCAACCCA-CAAAACGGGCGTACGGGTGCTCAGCCGGCT
* * ** * *
32519604 CGAAAAGGTAGAATACGCAAGCCGTGGATCGACCCAGTCCCCCCTGCGTACTGTCGATCTTGCTG
389 -GAAAAGGCAGAATACGCAAGCCGGGGATCGACCCAGTCCCCCCTGCGTACTACCGATCCTGCTA
* * * *
32519669 TCGCAACCCTCGGTCTGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGGATG
453 CCGCAACCCTCAGTCTGATCCGAACTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGGATG
* *
32519734 AACTCTGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGCGCTCAATCGGTCAGAGAGGTCG
518 AACTCCGTATGCCTAAGTCAACCCATGAAACAAGCATGCGGGCGCTCAATCGGTCAGAGAGGTCG
32519799 GTCGAAGAGGCATAATACGCAAGTCGGGGATCAGCCCGGTCCCCCTCTGCATGTTGTCGATCTCA
583 GTCGAAGAGGCATAATACGCAAGTCGGGGATCAGCCCGGTCCCCCTCTGCATGTTGTCGATCTCA
32519864 TTGTCAGTCCTGCTGCCACAACCCTCAGTTCGGCTGGG
648 TTGTCAGTCCTGCTGCCACAACCCTCAGTTCGGCTGGG
* * *
32519902 GCTTAGACATGGAATGAACTCCGTATGCCTAGGCCAACCCATGAAACGAGCGTGTCG-GCACTCA
1 GCTTAGACATGAAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTG-CGAGCACTCA
* * **
32519966 GCCGGCCGAAGAGGCAGAATGCGCAAGTCGGGGATCGGCCTGGTCCCCCCCTGTGGGCTGCCAAT
65 GCCGGCCGAAAAGGCAGAATGCGCAAGTCGGGGATCGGCCCGGT-CCCCCCTACGGGCTGCCAAT
* * *
32520031 CCTGCTACTGGTCCTACTACCACAACCCTCGGTCCGGTCCT-ATCTTAGATTGGGAATGAACTCT
129 CCTGCTA-----CC--CT-----AACCCTCGATCCGGT-CTAATCTTAGACTAGGAATGAACTCT
* * *
32520095 GTATGCCTAAGTCAACCCACAAAATGAGCATACGGGCGCTGAGCCGGCCGAAGAGGCATAATGCA
181 GTATGCCTAAGTCAACCCACAAAAAGAGCATACCGGCGCTGAGCCGACCGAAGAGGCATAATGCA
* *
32520160 CAAGCCAGGGATCGGCCCGATCCCCCTCTACGTGCTGTCGGTCCCGCTGCCTCAACCCTCGGTCC
246 CAAGCCAGGGATCAGCCCGATCCCCCTCTACGTGCTGTCGGTCCCGCTGCCACAACCCTCGGTCC
* *
32520225 AGCTGGGGCTTAGACATGGAATGAACTCCCTATGCTTAAGCCAACCCACAAAACGGGCGTACGGG
311 AGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAACCAACCCACAAAACGGGCGTACGGG
* * * * * * * * * *
32520290 TGCTCAGCCGGCTGGAGAGGCAGAATGCGTAAGTCGGGGATCGGCCCTGTCCCCCGTGTGTGCTA
376 TGCTCAGCCGGCTGAAAAGGCAGAATACGCAAGCCGGGGATCGACCCAGTCCCCCCTGCGTACTA
* * * * *
32520355 CCGATCCTGCTACCGTAACCCTCAGTTTGATCTGAACTTAGACTGGGAATGAACTTCGTATGCTT
441 CCGATCCTGCTACCGCAACCCTCAGTCTGATCCGAACTTAGACTAGGAATGAACTCCGTATGCTT
*
32520420 AGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGCGGGCGCTCAA
506 AGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCATGCGGGCGCTCAA
32520481 CTGACCAGAG
Statistics
Matches: 488, Mismatches: 73, Indels: 23
0.84 0.12 0.04
Matches are distributed among these distances:
685 95 0.19
686 25 0.05
691 2 0.00
693 1 0.00
697 7 0.01
698 353 0.72
699 5 0.01
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.20
Consensus pattern (685 bp):
GCTTAGACATGAAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCACTCAG
CCGGCCGAAAAGGCAGAATGCGCAAGTCGGGGATCGGCCCGGTCCCCCCTACGGGCTGCCAATCC
TGCTACCCTAACCCTCGATCCGGTCTAATCTTAGACTAGGAATGAACTCTGTATGCCTAAGTCAA
CCCACAAAAAGAGCATACCGGCGCTGAGCCGACCGAAGAGGCATAATGCACAAGCCAGGGATCAG
CCCGATCCCCCTCTACGTGCTGTCGGTCCCGCTGCCACAACCCTCGGTCCAGCTGGGGCTTAGAC
ATGGAATGAACTCCCTATGCCTAAACCAACCCACAAAACGGGCGTACGGGTGCTCAGCCGGCTGA
AAAGGCAGAATACGCAAGCCGGGGATCGACCCAGTCCCCCCTGCGTACTACCGATCCTGCTACCG
CAACCCTCAGTCTGATCCGAACTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGGATGAAC
TCCGTATGCCTAAGTCAACCCATGAAACAAGCATGCGGGCGCTCAATCGGTCAGAGAGGTCGGTC
GAAGAGGCATAATACGCAAGTCGGGGATCAGCCCGGTCCCCCTCTGCATGTTGTCGATCTCATTG
TCAGTCCTGCTGCCACAACCCTCAGTTCGGCTGGG
Found at i:32520427 original size:26 final size:26
Alignment explanation
Indices: 32520391--32520443 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
32520381 TTGATCTGAA
*
32520391 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
32520417 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
32520443 C
1 C
32520444 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:32521686 original size:26 final size:26
Alignment explanation
Indices: 32521645--32521697 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
32521635 CCGGTCCTAT
32521645 CTTAGACTGAGAATGAACTCCATATG
1 CTTAGACTGAGAATGAACTCCATATG
* *
32521671 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGAGAATGAACTCCATATG
32521697 C
1 C
32521698 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCATATG
Found at i:32521714 original size:339 final size:340
Alignment explanation
Indices: 32520989--32521771 Score: 1031
Period size: 343 Copynumber: 2.3 Consensus size: 340
32520979 CCGATCCTAT
* *
32520989 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATAAAATAAGCGTGCGGGCGCTGAGT
1 CTTAGACTGGGGATGAACTCC-TATGCCTAAGTCAACCCACAAAATAAGCGTGCGGGCGCTGAGT
* * * * ** * * *
32521054 CGGCCGAAGGGGCATCATGCACAAGCCGGGGATCGGCCCGGTCCCCCTCTGCATGCTGTTGGTCC
65 CGACCGGAGAGGCATAATGCACAAGTTGGGGATCGACCCAGTCCCCCTCTGCATGCTGTCGGTCC
* *
32521119 CGCTGCCACAACCCCCGATCCGATTGGGGCTTAGACATGGAATGAACTCCCTATACCTAAGCCAA
130 CACTGCCACAACCCCCGATCCGATTGGGGCATAGACATGGAATGAACTCCCTATACCTAAGCCAA
* *
32521184 CCCACGAAACAGGCGCGCGGGCGCTCAGCCAGCTGGAGAGGCAGAATACGCAAATCAGGGATCGG
195 CCCACGAAACAGGCGCGCGGGCGCTCA--CAGCTAGAGAGGCAGAATACGCAAACCAGGGATCGG
* * *
32521249 CCTGGTCACCCCTACATGCTACCGATCCTATTACCGTAACCTTCGGTCCGATCTAATCTTAGACT
258 CCTGATCACCCCTACATGCTACCGATCCTACTACCGTAACCATCGGTCCGATCTAATCTTAGACT
*
32521314 GGGAATGAACTCCATACG
323 GAGAATGAACTCCATACG
* * * * *
32521332 CTTAGACTGGGGATGAACTTCTCATGCCTAAGTCAACCCACAAAATAAGGGTACGGGTGCTGAGC
1 CTTAGACTGGGGATGAACTCCT-ATGCCTAAGTCAACCCACAAAATAAGCGTGCGGGCGCTGAGT
* *
32521397 CGATCGGAGAGGCATAATGCACAAGTTGGGGATCGACCCAGTCCCCCTCTGCGTGCTGTCGGTCC
65 CGACCGGAGAGGCATAATGCACAAGTTGGGGATCGACCCAGTCCCCCTCTGCATGCTGTCGGTCC
* *
32521462 CACTGCCACAACCCTCGATCCGGA-TGGGGCATAGACATGGAATGAACTCCCTATGCCTAAGCCA
130 CACTGCCACAACCCCCGATCC-GATTGGGGCATAGACATGGAATGAACTCCCTATACCTAAGCCA
** * * * *
32521526 ACCCACGAAATGGGCGTGCGGGCGTTCA-A-CTAGAGAGGCAGAATGCGCAAACCGGGGATCGGC
194 ACCCACGAAACAGGCGCGCGGGCGCTCACAGCTAGAGAGGCAGAATACGCAAACCAGGGATCGGC
* * * ** *
32521589 CTGATCCCCCCTGCATGCTATCGATCCTACTGTCGTAACCCAT-GGTCCGGTCCT-ATCTTAGAC
259 CTGATCACCCCTACATGCTACCGATCCTACTACCGTAA-CCATCGGTCCGAT-CTAATCTTAGAC
*
32521652 TGAGAATGAACTCCATATG
322 TGAGAATGAACTCCATACG
*
32521671 CTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCACAAAA-AGAGCGTGCGGGCGCTCAG
1 CTTAGACTGGGGATGAACTCC-TATGCCTAAGTCAACCCACAAAATA-AGCGTGCGGGCGCTGAG
* *
32521735 TCGACCAGAGAGGTA-AGATGCACAAGTTGGGGATCGA
64 TCGACCGGAGAGGCATA-ATGCACAAGTTGGGGATCGA
32521772 ACGGGTGGTA
Statistics
Matches: 383, Mismatches: 50, Indels: 18
0.85 0.11 0.04
Matches are distributed among these distances:
338 2 0.01
339 180 0.47
340 7 0.02
342 1 0.00
343 191 0.50
344 2 0.01
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.19
Consensus pattern (340 bp):
CTTAGACTGGGGATGAACTCCTATGCCTAAGTCAACCCACAAAATAAGCGTGCGGGCGCTGAGTC
GACCGGAGAGGCATAATGCACAAGTTGGGGATCGACCCAGTCCCCCTCTGCATGCTGTCGGTCCC
ACTGCCACAACCCCCGATCCGATTGGGGCATAGACATGGAATGAACTCCCTATACCTAAGCCAAC
CCACGAAACAGGCGCGCGGGCGCTCACAGCTAGAGAGGCAGAATACGCAAACCAGGGATCGGCCT
GATCACCCCTACATGCTACCGATCCTACTACCGTAACCATCGGTCCGATCTAATCTTAGACTGAG
AATGAACTCCATACG
Found at i:32522396 original size:26 final size:26
Alignment explanation
Indices: 32522367--32522419 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32522357 GGCTCCAAAT
*
32522367 CTTAGAC-TGGAAATTAACTCCGTATG
1 CTTAGACATGG-AATGAACTCCGTATG
32522393 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
32522419 C
1 C
32522420 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:32523239 original size:318 final size:324
Alignment explanation
Indices: 32522723--32523385 Score: 765
Period size: 318 Copynumber: 2.1 Consensus size: 324
32522713 GCTTAGACAT
* * * * ** *
32522723 GGAATGAACTCCTTATGCTTAAGCCAACCCATGAAACGGGCGTGCGGCACTCAGCTGGCTGAGAG
1 GGAATGAACTCCATATGCATAAGCCAACCCACGAAACGAGCGTGCGGCACTCAGCCAGCCGAGAG
* *
32522788 GCATAATGCGCAAGCCGGGGATCAGCCTGGTCCTCCTCTGCTTACGGTCGATCTCGCTGTCGGTC
66 GCATAATGCGCAAGCCGGGGATCAGCCCGATCCTCCTCTGCTTACGGTCGA-CTCGC--TCGGTC
* * *
32522853 CTGCTGCCACAACCCTTAATCTGGCTGGGGCTTAGACATGGATAGAACTCCGTATGCCTAAACCA
128 CCGCTGCCACAACCCTTAATCCGGCTGGGGCTTAGACATGGATAGAACTCCCTATGCCTAAACCA
* * **** * * * *
32522918 ACCCATGAAACGAGAGT-CTGGGTGCTCAGACGGTGGGAGAGGCAGAATGCGTAAGCCGGGGATT
193 ACCCACGAAACGAGAGTGC-GGGTGCACAGACGACCAGAGAGGCAAAATGCGCAAGCCAGGGATC
** *
32522982 GGTTCGATCCCCCCCTGCGTGCTGTCGATCCTGTTGCTGCAACCCTC-AGTCCAGTCCAATCTTA
257 GGCCCGAT-CCCCCCTACGTGCTGTCGATCCTGTTGCTGCAACCCTCGA-TCCAGTCCAATCTTA
* *
32523046 AATTG
320 AACTA
* *
32523051 GGAATGAACTCCATATGCATAAGTCAACCCACGAAACGAGCGTGCAGGCACTGAGCCAGCCGAAG
1 GGAATGAACTCCATATGCATAAGCCAACCCACGAAACGAGCGTGC-GGCACTCAGCCAGCCG-AG
* *
32523116 AGGCATAATGCGTAAGCCGGGGATCGGCCCGATCC-CC-CT-C-TAC-GT-G-CT-GC-CGGTCC
64 AGGCATAATGCGCAAGCCGGGGATCAGCCCGATCCTCCTCTGCTTACGGTCGACTCGCTCGGTCC
** *
32523172 CGCTGCCACAACCCTTGGTCCGGCTGGGGCTTAGACATGGA-ATGAACTCCCTATGCCTAAGCCA
129 CGCTGCCACAACCCTTAATCCGGCTGGGGCTTAGACATGGATA-GAACTCCCTATGCCTAAACCA
* * * *
32523236 ACCCGCGAAACGGGAGTGCGGGTGCACAGCCGACCAGAGAGGCAAAATGCGCAAGTCAGGGATCG
193 ACCCACGAAACGAGAGTGCGGGTGCACAGACGACCAGAGAGGCAAAATGCGCAAGCCAGGGATCG
* * * * *
32523301 GCCCGGTCTCCCCTACGTGCTGTCGATCCTGTTGCTGCAACCCTCGATCCGGTCCGATCTTAGAC
258 GCCCGATCCCCCCTACGTGCTGTCGATCCTGTTGCTGCAACCCTCGATCCAGTCCAATCTTAAAC
32523366 TA
323 TA
*
32523368 GGAATGAACTCCGTATGC
1 GGAATGAACTCCATATGC
32523386 TTAGACTGGG
Statistics
Matches: 286, Mismatches: 44, Indels: 21
0.81 0.13 0.06
Matches are distributed among these distances:
317 69 0.24
318 116 0.41
319 1 0.00
321 2 0.01
322 2 0.01
324 1 0.00
325 2 0.01
326 3 0.01
327 1 0.00
328 42 0.15
329 14 0.05
330 33 0.12
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (324 bp):
GGAATGAACTCCATATGCATAAGCCAACCCACGAAACGAGCGTGCGGCACTCAGCCAGCCGAGAG
GCATAATGCGCAAGCCGGGGATCAGCCCGATCCTCCTCTGCTTACGGTCGACTCGCTCGGTCCCG
CTGCCACAACCCTTAATCCGGCTGGGGCTTAGACATGGATAGAACTCCCTATGCCTAAACCAACC
CACGAAACGAGAGTGCGGGTGCACAGACGACCAGAGAGGCAAAATGCGCAAGCCAGGGATCGGCC
CGATCCCCCCTACGTGCTGTCGATCCTGTTGCTGCAACCCTCGATCCAGTCCAATCTTAAACTA
Found at i:32523277 original size:159 final size:157
Alignment explanation
Indices: 32522843--32523331 Score: 427
Period size: 159 Copynumber: 3.1 Consensus size: 157
32522833 GGTCGATCTC
* * *
32522843 GCTGTCGGTCCTGCTGCCACAACCCTTAATCTGGCTGGGGCTTAGACATGG-ATAGAACTCCGTA
1 GCTGTCGGTCCTGCTGCCACAACCCTTAGTCCGGCTGGGGCTTAGACATGGAAT-GAACTCCATA
* * * * *** *
32522907 TGCCTAAACCAACCCATGAAACGAGAGT-CTGGGTGCTCAGACGGTGGGAGAGGCAGAATGCGTA
65 TGCCTAAGCCAACCCACGAAACGAGAGTGC-GGGTGCACAG-CCGACCGAGAGGCAAAATGCGTA
* ** *
32522971 AGCCGGGGATTGGTTCGATCCCCCCCTGCGT
128 AGCCGGGGATCGGCCCGAT-CCCCCCTACGT
* * ** * * ****
32523002 GCTGTCGATCCTGTTGCTGCAACCCTCAGTCCAG-TCCAATCTTA-A-ATTGGGAATGAACTCCA
1 GCTGTCGGTCCTGCTGCCACAACCCTTAGTCCGGCT-GGGGCTTAGACA-T-GGAATGAACTCCA
* * * * *
32523064 TATGCATAAGTCAACCCACGAAACGAGCGTGC-AG-GCACTGAGCC-AGCCGAAGAGGCATAATG
63 TATGCCTAAGCCAACCCACGAAACGAGAGTGCGGGTGCAC--AGCCGA-CCG-AGAGGCAAAATG
32523126 CGTAAGCCGGGGATCGGCCCGATCCCCCTCTACGT
124 CGTAAGCCGGGGATCGGCCCGATCCCCC-CTACGT
* * * *
32523161 GCTGCCGGTCCCGCTGCCACAACCCTTGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTAT
1 GCTGTCGGTCCTGCTGCCACAACCCTTAGTCCGGCTGGGGCTTAGACATGGAATGAACTCCATAT
* * *
32523226 GCCTAAGCCAACCCGCGAAACGGGAGTGCGGGTGCACAGCCGACCAGAGAGGCAAAATGCGCAAG
66 GCCTAAGCCAACCCACGAAACGAGAGTGCGGGTGCACAGCCGACC-GAGAGGCAAAATGCGTAAG
* * * *
32523291 TCAGGGATCGGCCCGGTCTCCCCTACGT
130 CCGGGGATCGGCCCGATCCCCCCTACGT
*
32523319 GCTGTCGATCCTG
1 GCTGTCGGTCCTG
32523332 TTGCTGCAAC
Statistics
Matches: 255, Mismatches: 58, Indels: 35
0.73 0.17 0.10
Matches are distributed among these distances:
157 4 0.02
158 27 0.11
159 210 0.82
160 9 0.04
161 5 0.02
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (157 bp):
GCTGTCGGTCCTGCTGCCACAACCCTTAGTCCGGCTGGGGCTTAGACATGGAATGAACTCCATAT
GCCTAAGCCAACCCACGAAACGAGAGTGCGGGTGCACAGCCGACCGAGAGGCAAAATGCGTAAGC
CGGGGATCGGCCCGATCCCCCCTACGT
Found at i:32523385 original size:158 final size:157
Alignment explanation
Indices: 32522955--32523385 Score: 397
Period size: 159 Copynumber: 2.7 Consensus size: 157
32522945 AGACGGTGGG
* * * * ** *
32522955 AGAGGCAGAATGCGTAAGCCGGGGATTGGTTCGATCCCCCCCTGCGTGCTGTCGATCCTGTTGCT
1 AGAGGCAAAATGCGCAAGCCAGGGATCGGCCCGAT-CCCCCCTACGTGCTGTCGATCCTGTTGCT
* * * * * *
32523020 GCAACCCTC-AGTCCAGTCCAATCTTAAATTGGGAATGAACTCCATATGCATAAGTCAACCCACG
65 GCAACCCTCGA-TCCGGTCCGATCTTAGACTAGGAATGAACTCCATATGCATAAGCCAACCCACG
*
32523084 AAACGAGCGTGCAGGCACTGAGCCAGCCGA
129 AAACGAGAGTGCAGGCAC-GAGCCAGCCGA
* * * * * * * *
32523114 AGAGGCATAATGCGTAAGCCGGGGATCGGCCCGATCCCCCTCTACGTGCTGCCGGTCCCGCTGCC
1 AGAGGCAAAATGCGCAAGCCAGGGATCGGCCCGATCCCCC-CTACGTGCTGTCGATCCTGTTGCT
* * * * ** * * *
32523179 ACAACCCTTGGTCCGG-CTGGGGCTTAGAC-ATGGAATGAACTCCCTATGCCTAAGCCAACCCGC
65 GCAACCCTCGATCCGGTC-CGATCTTAGACTA-GGAATGAACTCCATATGCATAAGCCAACCCAC
* *
32523242 GAAACGGGAGTGCGGGTGCAC-AGCC-GACC-A
128 GAAACGAGAGTGC-AG-GCACGAGCCAG-CCGA
* * *
32523272 GAGAGGCAAAATGCGCAAGTCAGGGATCGGCCCGGTCTCCCCTACGTGCTGTCGATCCTGTTGCT
1 -AGAGGCAAAATGCGCAAGCCAGGGATCGGCCCGATCCCCCCTACGTGCTGTCGATCCTGTTGCT
*
32523337 GCAACCCTCGATCCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGC
65 GCAACCCTCGATCCGGTCCGATCTTAGACTAGGAATGAACTCCATATGC
32523386 TTAGACTGGG
Statistics
Matches: 216, Mismatches: 46, Indels: 21
0.76 0.16 0.07
Matches are distributed among these distances:
158 65 0.30
159 146 0.68
160 1 0.00
161 4 0.02
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.19
Consensus pattern (157 bp):
AGAGGCAAAATGCGCAAGCCAGGGATCGGCCCGATCCCCCCTACGTGCTGTCGATCCTGTTGCTG
CAACCCTCGATCCGGTCCGATCTTAGACTAGGAATGAACTCCATATGCATAAGCCAACCCACGAA
ACGAGAGTGCAGGCACGAGCCAGCCGA
Found at i:32523388 original size:26 final size:26
Alignment explanation
Indices: 32523359--32523411 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
32523349 CCGGTCCGAT
*
32523359 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACCCCGTATG
* *
32523385 CTTAGACTGGGGATGAACCCCGTATG
1 CTTAGACTAGGAATGAACCCCGTATG
32523411 C
1 C
32523412 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACCCCGTATG
Found at i:32523779 original size:26 final size:26
Alignment explanation
Indices: 32523741--32523793 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
32523731 CTGGTTCGAT
32523741 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
32523767 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
32523793 C
1 C
32523794 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:32524271 original size:25 final size:26
Alignment explanation
Indices: 32524243--32524292 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
32524233 CCGGTCTGAT
*
32524243 CTTAGACT-AGGTTGAACTCCGTATG
1 CTTAGACTGAGGATGAACTCCGTATG
*
32524268 CTTAGACTGGGGATGAACTCCGTAT
1 CTTAGACTGAGGATGAACTCCGTAT
32524293 CCCTAAGTCA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 8 0.36
26 14 0.64
ACGTcount: A:0.24, C:0.20, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGAGGATGAACTCCGTATG
Found at i:32524638 original size:26 final size:26
Alignment explanation
Indices: 32524609--32524661 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
32524599 CCAGTCTGAT
*
32524609 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* * * *
32524635 CTTATATTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
32524661 C
1 C
32524662 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:32525368 original size:26 final size:26
Alignment explanation
Indices: 32525330--32525382 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
32525320 GGCTCAAAAT
32525330 CTTAGACTGGGAATGAACTCC-GTATG
1 CTTAGACTGGGAATGAAC-CCTGTATG
32525356 CTTAGACAT-GGAATGAACCCTGTATG
1 CTTAGAC-TGGGAATGAACCCTGTATG
32525382 C
1 C
32525383 CTAAGCCAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 2 0.08
26 22 0.88
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACCCTGTATG
Found at i:32525776 original size:171 final size:170
Alignment explanation
Indices: 32525523--32525842 Score: 435
Period size: 171 Copynumber: 1.9 Consensus size: 170
32525513 TATTACACTG
* * * * * * * *
32525523 GGAATGAACTCCGTCTGCCTAAGTCAACCCATGAAACGGGCGTGTGGGTGCTCAGTCGATCGAAA
1 GGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGACCGAAA
*
32525588 AGGCACAATGCGCAAGTCGGGGATCAGCCCGATCCCCCTCTGCATGCTGTCGATCTCGCTG-TCG
66 AGGCACAATGCGCAAGTCGAGGATCAGCCCGATCCCCC-CTGCATGCTGTCGATCTCGCTGCT-G
32525652 ATCCTGCTGCCACAACCCTCGGTCTGGCTGGGGTTTAAACAT
129 ATCCTGCTGCCACAACCCTCGGTCTGGCTGGGGTTTAAACAT
* *
32525694 GGAATGAACTCCATATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAGCCGGCCGAAA
1 GGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGACCGAAA
* * * * * * * *
32525759 AGGCAGATTGTGCAAGTCGAGGATCGGCCCGGTCCCTCCTGCATGCTGTCGATCTTGCTGCTGGT
66 AGGCACAATGCGCAAGTCGAGGATCAGCCCGATCCCCCCTGCATGCTGTCGATCTCGCTGCTGAT
*
32525824 CCTGCTGCTACAACCCTCG
131 CCTGCTGCCACAACCCTCG
32525843 ATCAGATCCG
Statistics
Matches: 128, Mismatches: 20, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
170 41 0.32
171 87 0.68
ACGTcount: A:0.21, C:0.30, G:0.28, T:0.21
Consensus pattern (170 bp):
GGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGACCGAAA
AGGCACAATGCGCAAGTCGAGGATCAGCCCGATCCCCCCTGCATGCTGTCGATCTCGCTGCTGAT
CCTGCTGCCACAACCCTCGGTCTGGCTGGGGTTTAAACAT
Found at i:32525880 original size:170 final size:171
Alignment explanation
Indices: 32525519--32525881 Score: 419
Period size: 171 Copynumber: 2.1 Consensus size: 171
32525509 CTGATATTAC
* * * * * * * *
32525519 ACTGGGAATGAACTCCGTCTGCCTAAGTCAACCCATGAAACGGGCGTGTGGGTGCTCAGTCGATC
1 ACTGGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGACC
*
32525584 GAAAAGGCACAATGCGCAAGTCGGGGATCAGCCCGATCCCCCTCTGCATGCTGTCGATCTCGCTG
66 GAAAAGGCACAATGCGCAAGTCGAGGATCAGCCCGATCCCCCTCTGCATGCTGTCGATCTCGCTG
* * * ** *
32525649 TCGATCCTGCTGCCACAACCCTCGGTCTGGCTGGGGTTTAA
131 TCGATCCTGCTGCCACAACCCTCGATCTAGATCCGATTTAA
* *
32525690 ACAT-GGAATGAACTCCATATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAGCCGGC
1 AC-TGGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGAC
* * * * * * *
32525754 CGAAAAGGCAGATTGTGCAAGTCGAGGATCGGCCCGGTCCCTC-CTGCATGCTGTCGATCTTGCT
65 CGAAAAGGCACAATGCGCAAGTCGAGGATCAGCCCGATCCCCCTCTGCATGCTGTCGATCTCGCT
* * *
32525818 G-CTGGTCCTGCTGCTACAACCCTCGATC-AGATCCGATCTTAG
130 GTC-GATCCTGCTGCCACAACCCTCGATCTAGATCCGAT-TTAA
*
32525860 ACTGGGAATGAACGCCATATGC
1 ACTGGGAATGAACTCCATATGC
32525882 TTAGACATGG
Statistics
Matches: 160, Mismatches: 28, Indels: 9
0.81 0.14 0.05
Matches are distributed among these distances:
169 6 0.04
170 65 0.41
171 88 0.55
172 1 0.01
ACGTcount: A:0.22, C:0.29, G:0.27, T:0.21
Consensus pattern (171 bp):
ACTGGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGACC
GAAAAGGCACAATGCGCAAGTCGAGGATCAGCCCGATCCCCCTCTGCATGCTGTCGATCTCGCTG
TCGATCCTGCTGCCACAACCCTCGATCTAGATCCGATTTAA
Found at i:32525893 original size:26 final size:26
Alignment explanation
Indices: 32525855--32525907 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
32525845 CAGATCCGAT
32525855 CTTAGACTGGGAATGAACG-CCATATG
1 CTTAGACTGGGAATGAA-GTCCATATG
32525881 CTTAGACAT-GGAATGAAGTCCATATG
1 CTTAGAC-TGGGAATGAAGTCCATATG
32525907 C
1 C
32525908 CTAAGCAAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 1 0.04
26 23 0.92
27 1 0.04
ACGTcount: A:0.32, C:0.19, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAGTCCATATG
Found at i:32526819 original size:26 final size:26
Alignment explanation
Indices: 32526783--32526832 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
32526773 GACTTAGGCT
32526783 TACGAAGTTCATT-CCATGTCTAAGCA
1 TACGAAGTTCATTCCCA-GTCTAAGCA
*
32526809 TACGGAGTTCATTCCCAGTCTAAG
1 TACGAAGTTCATTCCCAGTCTAAG
32526833 ATTTTGAGCC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (26 bp):
TACGAAGTTCATTCCCAGTCTAAGCA
Found at i:32527531 original size:26 final size:26
Alignment explanation
Indices: 32527501--32527553 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
32527491 GTTGATTTAG
32527501 GCATACAAAGTTCATCCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
* * *
32527527 GCATACGAAGTTGATGCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
32527553 G
1 G
32527554 TTTGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.26, G:0.19, T:0.23
Consensus pattern (26 bp):
GCATACAAAGTTCATCCCCAGTCTAA
Found at i:32528005 original size:26 final size:26
Alignment explanation
Indices: 32527969--32528021 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32527959 GTTGGCTTAG
32527969 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
32527995 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
32528021 G
1 G
32528022 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:32528398 original size:26 final size:26
Alignment explanation
Indices: 32528352--32528402 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
32528342 TGACTTAGGC
* *
32528352 ATACGGAGTTCATCACTAGTCTAAGG
1 ATACAGAGTTCATCACCAGTCTAAGG
32528378 ATACAGAGTTCATTC-CCAGTCTAAG
1 ATACAGAGTTCA-TCACCAGTCTAAG
32528403 ATCAGGACCA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 20 0.91
27 2 0.09
ACGTcount: A:0.31, C:0.22, G:0.20, T:0.27
Consensus pattern (26 bp):
ATACAGAGTTCATCACCAGTCTAAGG
Found at i:32528671 original size:156 final size:159
Alignment explanation
Indices: 32528472--32528870 Score: 396
Period size: 159 Copynumber: 2.5 Consensus size: 159
32528462 CCCTGCCTTA
* ** * * * *
32528472 CGCATTCTGCCTCTCCGACCGGTTGAGCGCCCGCAC-ATCCGTTTCATGGGTTGGCATAGGCATA
1 CGCATTCTACCTCTCCGACCGACTCAGCGCCCACACGCT-CGTTTCATGGGTTGGCTTAGGCATA
* * * **
32528536 GGGAGTTCATTCCATGTCTAAGCCCCAG-CCGGA-TG-GGATT-TGGCAGCGGGACCGACAGCAC
65 CGGAGTTCATTCCATGTCTAAG-ACCAGACCGGACCGAGGATTGTGGCAGCAAGACCGACAGCAC
* * *
32528597 GCAGAGGGGGATCGGGCCGATCCCCGGCTTG
129 GCAGAGGGGGACCAGGCCGATCCCCAGCTTG
* * * * * * * * *
32528628 CGCATTTTGCCTTTTCGACTGGCTCAGCGCCCACACGCTCGTTTCATGGGTTGACTTATGCAAAC
1 CGCATTCTACCTCTCCGACCGACTCAGCGCCCACACGCTCGTTTCATGGGTTGGCTTAGGCATAC
* * * * *
32528693 GGAGTTCATTCCCA-ATCTATGATCAGACCGGACCGAGGGTTGTGGCAGCAAGATCGACAGCACG
66 GGAGTTCATT-CCATGTCTAAGACCAGACCGGACCGAGGATTGTGGCAGCAAGACCGACAGCACG
* *
32528757 TAGTGGGGGACCAGGCCGATCCCCAGCTTG
130 CAGAGGGGGACCAGGCCGATCCCCAGCTTG
* * * * *
32528787 TGCATTCTACCTCTCCGGCCGACTGAGCGTCCTCACGCTCGTTTCATGGGTTGGCTTAGGCATAC
1 CGCATTCTACCTCTCCGACCGACTCAGCGCCCACACGCTCGTTTCATGGGTTGGCTTAGGCATAC
*
32528852 AGAGTTCATTCCATGTCTA
66 GGAGTTCATTCCATGTCTA
32528871 GGCATACAGA
Statistics
Matches: 193, Mismatches: 43, Indels: 11
0.78 0.17 0.04
Matches are distributed among these distances:
155 3 0.02
156 70 0.36
157 5 0.03
158 7 0.04
159 108 0.56
ACGTcount: A:0.19, C:0.29, G:0.29, T:0.24
Consensus pattern (159 bp):
CGCATTCTACCTCTCCGACCGACTCAGCGCCCACACGCTCGTTTCATGGGTTGGCTTAGGCATAC
GGAGTTCATTCCATGTCTAAGACCAGACCGGACCGAGGATTGTGGCAGCAAGACCGACAGCACGC
AGAGGGGGACCAGGCCGATCCCCAGCTTG
Found at i:32530056 original size:159 final size:157
Alignment explanation
Indices: 32529567--32530066 Score: 548
Period size: 158 Copynumber: 3.2 Consensus size: 157
32529557 CCCAGTCTAA
* * * *
32529567 GCATATGGAGTTCATTCCA-GTCTAAGATCAGATCGGATCGAGGGTTGGGAAGCAAGATCGACAG
1 GCATACGGAGTTCATTCCATGTCTAAGATCAGATCGGACCAAGGGTTGGGAAGCAGGATCGACAG
* * * * * * *
32529631 CACACAGGGGGGATCGGGTCGATCCCCGGCTTATGTATTCTGCCTCTCCGGCCGGCTGAGCACCC
66 CACGCAGGGGGGATCGGGTCGATCCCTGGCTTGTGCATTCTGCCTCTCCGACCGACTGAGCGCCC
* * *
32529696 GCACGC-CTGTTGCGTGTGTTGGCTTAG
131 GCACGCTC-GTTTCATGGGTTGGCTTAG
* ** * * *
32529723 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TTGGACCGAA-GGTTGGGGCAA-CGGGACCT
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGATCGGACC-AAGGGTT-GGG-AAGCAGGATC-
* * *
32529785 G-CAGCACGCAGTGGGGGATCGGGTCGATCCCT-GCTTGTGCATTATGGCTCTCCGACCGACTCA
61 GACAGCACGCAG-GGGGGATCGGGTCGATCCCTGGCTTGTGCATTCTGCCTCTCCGACCGACTGA
** * * *
32529848 ATGCCCGCACACTCATTTCATGGGTTGACTTAG
125 GCGCCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * * *
32529881 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGACCAGACCAAGGGTTGCGGTAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGATCGGACCAAGGGTTG-GGAAGCAGGATCGAC
*
32529945 AGCACGCAGAGGGGATCGGGTCGATCCCTGGCTTGTGCATTCTGCCTCTCTCGACCGACTGAGCG
64 AGCACGCAGGGGGGATCGGGTCGATCCCTGGCTTGTGCATTCTGCCTCTC-CGACCGACTGAGCG
32530010 CCCGCACGCTCGTTTCATGGGTTGGCTTAG
128 CCCGCACGCTCGTTTCATGGGTTGGCTTAG
*
32530040 GCATACGGGGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
32530067 CATATGGAGT
Statistics
Matches: 280, Mismatches: 47, Indels: 31
0.78 0.13 0.09
Matches are distributed among these distances:
156 18 0.06
157 42 0.15
158 134 0.48
159 86 0.31
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGATCGGACCAAGGGTTGGGAAGCAGGATCGACAG
CACGCAGGGGGGATCGGGTCGATCCCTGGCTTGTGCATTCTGCCTCTCCGACCGACTGAGCGCCC
GCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:32530070 original size:26 final size:26
Alignment explanation
Indices: 32530040--32530092 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
32530030 GTTGGCTTAG
*
32530040 GCATACGGGGTTCATTC-CATGTCTAA
1 GCATACGGAGTTCATTCTCA-GTCTAA
*
32530066 GCATATGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCTCAGTCTAA
32530092 G
1 G
32530093 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCTCAGTCTAA
Found at i:32535439 original size:160 final size:158
Alignment explanation
Indices: 32535077--32535571 Score: 495
Period size: 160 Copynumber: 3.1 Consensus size: 158
32535067 CCAGTATAAA
*
32535077 CATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGGCA-TAGGATCGACAG
1 CATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGTAGGATCGACAG
* * * * * * * *
32535141 CACGTAG-GGGGGACC-GAGCTGATCCCCGACTTACGCATTTTGCCTTTTCGATCGACTGAGCGC
66 CACGTAGAGGGGGACCGGA-CTGATCCCCGGCTTGCGCATTCTACCTCTCCGATCGGCTGAACGC
* *
32535204 CCGCACGCCCGTTTCATGGGTTGGCTTAGG
130 CCGCACGCTCGTTTCGTGGGTT-GCTTAGG
** * ** * * * *
32535234 CATAGGGAGTTCATTCCAAGTCTAAGCCCCA-ACC-GAACTGAGGGTTGTGGTAGTGGGACCGAC
1 CATACAGAGTTCATTCCCAGTCTAAG-ATCAGACCAG-ACTGAGGGTTGCGGCAGTAGGATCGAC
* *
32535297 AGCACGCAGAGGGGGACTCGGACTGATCCCCGGCTTGCGCATTCTACCTCTCCGATCGGCTCAAC
64 AGCACGTAGAGGGGGAC-CGGACTGATCCCCGGCTTGCGCATTCTACCTCTCCGATCGGCTGAAC
*
32535362 GCCCGCACGCTCATTTCGTGGGTTGACTTAGG
128 GCCCGCACGCTCGTTTCGTGGGTTG-CTTAGG
* * * * * * * *
32535394 CATACAAAGTTTATTCCCAGTTTAAGATCAGACCAGACCGAGGGTTACAGCAGCAGGATCGATAG
1 CATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGTAGGATCGACAG
* *
32535459 CACGTA-AGGGGGGACCGGGCT-AGT-CCCGGCTTGCGCATTCTACCTCTCCGACCGGCTGAGCA
66 CACGTAGA-GGGGGACCGGACTGA-TCCCCGGCTTGCGCATTCTACCTCTCCGATCGGCTGA--A
* *
32535521 CCCACACACACGCTCGTTTCGTGGGTTTGCTTAGG
127 CGC-C-CGCACGCTCGTTTCGTGGG-TTGCTTAGG
32535556 CATAC-GAGTTCATTCC
1 CATACAGAGTTCATTCC
32535572 ATTTCTAAGC
Statistics
Matches: 273, Mismatches: 49, Indels: 28
0.78 0.14 0.08
Matches are distributed among these distances:
156 1 0.00
157 40 0.15
158 51 0.19
159 17 0.06
160 120 0.44
161 13 0.05
162 28 0.10
163 3 0.01
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.22
Consensus pattern (158 bp):
CATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGTAGGATCGACAG
CACGTAGAGGGGGACCGGACTGATCCCCGGCTTGCGCATTCTACCTCTCCGATCGGCTGAACGCC
CGCACGCTCGTTTCGTGGGTTGCTTAGG
Found at i:32535604 original size:26 final size:25
Alignment explanation
Indices: 32535555--32535606 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 25
32535545 GTTTGCTTAG
*
32535555 GCATACGAGTTCATTCCATTTCTAA
1 GCATACGAGTTCATTCCATGTCTAA
32535580 GCATACGGAGTTCATTCC-TAGTCTAA
1 GCATAC-GAGTTCATTCCAT-GTCTAA
32535606 G
1 G
32535607 ATCAGACCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.33
Consensus pattern (25 bp):
GCATACGAGTTCATTCCATGTCTAA
Found at i:32535984 original size:26 final size:26
Alignment explanation
Indices: 32535933--32535985 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
32535923 GTTTACTTAG
* *
32535933 GCATACCGAGTTCATCCCTAGTCTAA
1 GCATACAGAGTTCATCCCTAGCCTAA
32535959 GCATACAGAGTTCATTCCC-AGCCTAA
1 GCATACAGAGTTCA-TCCCTAGCCTAA
32535985 G
1 G
32535986 ATCGGATCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.28, C:0.30, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCTAGCCTAA
Found at i:32537181 original size:26 final size:26
Alignment explanation
Indices: 32537151--32537203 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
32537141 GTTGACTTAG
*
32537151 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* * *
32537177 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
32537203 G
1 G
32537204 ATTGAACTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:32537548 original size:26 final size:26
Alignment explanation
Indices: 32537498--32537550 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
32537488 GTTGGCTTAG
* *
32537498 GCATATGGAGTTCATTCCATTTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
32537524 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
32537550 G
1 G
32537551 ATTAGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:32539099 original size:26 final size:26
Alignment explanation
Indices: 32539063--32539140 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
32539053 GTTGACTGAG
*
32539063 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
32539089 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
32539115 GCATACAGAGTTCATT-CCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
32539140 G
1 G
32539141 ATCAGACAGG
Statistics
Matches: 49, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
25 10 0.20
26 39 0.80
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:32539424 original size:159 final size:160
Alignment explanation
Indices: 32539246--32539619 Score: 411
Period size: 159 Copynumber: 2.4 Consensus size: 160
32539236 TGAGCACCCG
* * * *
32539246 CACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCGGA
1 CACGCTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAGATCAGA
* * **
32539310 -CAGAGGGTTAAGGCAGCAGGATCGGTAACACGCAGAGGGGGACTAGGTCGATCCCCGACTTG-T
66 TC-GAAGGTTAAGGCAACAGGATCGACAACACGCAGAGGGGGACTAGGTCGATCCCCGACTTGCT
*
32539373 GCATTATGCCTCTCCGGCCTGCTCA-ATGCC-
130 -CATTATGCCTCTCCGGCCGGCTCAGATGCCA
* * ****
32539403 CGTACGCTTGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTTCCA-GTCTAAG-ATTGGATC
1 C--ACGCTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCA-TTCCATGTCTAAGCCCCAGATC
* * * * * *
32539466 AGATCGAAGGTTACGGCAATAGGATCGACAGCACGTAGAGGGGGACTAGGTTGATCCCTGACTTG
63 AGATCGAAGGTTAAGGCAACAGGATCGACAACACGCAGAGGGGGACTAGGTCGATCCCCGACTTG
* * *
32539531 CTCATTCTGCCTCTCCGGCCGGCTGAGCTGCCA
128 CTCATTATGCCTCTCCGGCCGGCTCAGATGCCA
* * *
32539564 CACGCTCGTTTCGTGGGTTAGCTTAGGCATACGAAGTTCATTTCATGTCTAAGCCC
1 CACGCTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCC
32539620 ATCCGGATCG
Statistics
Matches: 176, Mismatches: 31, Indels: 17
0.79 0.14 0.08
Matches are distributed among these distances:
157 1 0.01
158 5 0.03
159 158 0.90
160 11 0.06
161 1 0.01
ACGTcount: A:0.21, C:0.25, G:0.28, T:0.26
Consensus pattern (160 bp):
CACGCTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAGATCAGA
TCGAAGGTTAAGGCAACAGGATCGACAACACGCAGAGGGGGACTAGGTCGATCCCCGACTTGCTC
ATTATGCCTCTCCGGCCGGCTCAGATGCCA
Found at i:32540066 original size:159 final size:160
Alignment explanation
Indices: 32539729--32540262 Score: 449
Period size: 159 Copynumber: 3.4 Consensus size: 160
32539719 CGGCTCAGCA
* ** * * ** * *
32539729 CCCGCACACTCATTTTGTGGGTTGACTTATGCATACTAAGTTCATTCCCA-GTCTAAG-ATCGGA
1 CCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGA
* * * * ** **
32539792 CTAGACCGAGGGTTGCGGCAGTAGGATCGACAGCACAC-AGGGG-GACCGGGCCGATCCTAGGCT
65 CCAGACCAAAGGTTGCGGCAGCAGGATCGACAGCACACAAGGGGTGACCGGATCGATCCCCGGCT
* * ** * * *
32539855 TGCGCATTCTGCCTCTCTGGTCAGTTGAGCA
130 TGCGCATTATACCTCTCCAGTCAGCTGAACG
* * * *
32539886 CCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-C
1 CCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGAC
* ** * * * * ** *
32539950 CGGACTGAGGGTTGTGGCATCGGGA-CTGACAGCACGTAGAGGGG-GACCGGATGGATCCCCGGC
66 CAGACCAAAGGTTGCGGCAGCAGGATC-GACAGCACACA-AGGGGTGACCGGATCGATCCCCGGC
* *
32540013 TTGCGCATTATGCCTTTCCAGTCAGCAT-AACG
129 TTGCGCATTATACCTCTCCAGTCAGC-TGAACG
* * ** * * *
32540045 CCCGTACGCTCGTTTCATGGGTTGATTTAGGCATACGGAGTTCATTCCCA-ATCTAAG-ATCGGA
1 CCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGA
* *
32540108 CCAGACCAAAGGTTGCGGCAGCAGGATCGACAGCACACAAGGGGTGACCGGGTCGATTCCCGGCT
65 CCAGACCAAAGGTTGCGGCAGCAGGATCGACAGCACACAAGGGGTGACCGGATCGATCCCCGGCT
* * * *
32540173 TGCGCATTCTACCTCTCCGGTCGGCTGAGCG
130 TGCGCATTATACCTCTCCAGTCAGCTGAACG
* * *
32540204 CCTGCATGCTCATTTCATGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCA
1 CCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
32540263 TACGAAGTTG
Statistics
Matches: 295, Mismatches: 69, Indels: 23
0.76 0.18 0.06
Matches are distributed among these distances:
156 4 0.01
157 72 0.24
158 13 0.04
159 200 0.68
160 6 0.02
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (160 bp):
CCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGAC
CAGACCAAAGGTTGCGGCAGCAGGATCGACAGCACACAAGGGGTGACCGGATCGATCCCCGGCTT
GCGCATTATACCTCTCCAGTCAGCTGAACG
Found at i:32540792 original size:513 final size:513
Alignment explanation
Indices: 32539814--32540801 Score: 1378
Period size: 513 Copynumber: 1.9 Consensus size: 513
32539804 TTGCGGCAGT
* * * *
32539814 AGGATCGACAGCACACAGGGGGACCGGGCCGATCCTAGGCTTGCGCATTCTGCCTCTCTGGTCAG
1 AGGATCAACAGCACACAGGGGGACCGGGCCGATCCCAGGCTTGCGCATTCTGCCTCTCCGATCAG
*
32539879 TTGAGCACCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
66 TTGAGCACCCGCACGCCCATTTCGTGGGCTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
* * * * ***
32539944 CCCAGCCGGACTGAGGGTTGTGGCATCGGGACTGACAGCACGTAGAGGGGGACCGGATGGATCCC
131 CCCAGCCGAACTGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGACCGGACCAATCCC
* * * * *
32540009 CGGCTTGCGCATTATGCCTTTCCAGTCAGCATAACGCCCGTACGCTCGTTTCATGGGTTGATTTA
196 CGGCTTGCGCATTATGCCTTTCCAGCCAGCATAACGCCCGCACACTCGTTTCATGGGTTAACTTA
* * *
32540074 GGCATACGGAGTTCATTCCCAATCTAAGATCGGACCAGACCAAAGGTTGCGGCAGCAGGATCGAC
261 GGCATACGAAGTTCATTCCCAATCTAAGATCAGACCAGACCAAAGGTTGCAGCAGCAGGATCGAC
* * * *
32540139 AGCACACAAGGGGTGACCGGGTCGATTCCCGGCTTGCGCATTCTACCTCTCCGGTCGGCTGAGCG
326 AGCACACAAGGGGGGACCGGGCCGATTCCCGGCTTGCACAATCTACCTCTCCGGTCGGCTGAGCG
*
32540204 CCTGCATGCTCATTTCATGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCATACGAA
391 CCTGCACGCTCATTTCATGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCATACGAA
*
32540269 GTTGATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTACGGCAGTAGGACCACCAGC
456 GTTAATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTACGGCAGTAGGACCACCAGC
** * * *
32540327 AGGATCAACAGCACGTAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGG
1 AGGATCAACAGCACACAGGGGGACCGGGCCGATCCCAGGCTTGCGCATTCTGCCTCTCCGATCAG
* *
32540392 TTGAGCGCCCGCACGCCCGTTTCGTGGGCTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
66 TTGAGCACCCGCACGCCCATTTCGTGGGCTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
* * * * * *
32540457 CCCAGTCGAAGTGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGTGGGATCGGGCCAATCCT
131 CCCAGCCGAACTGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGACCGGACCAATCCC
* ** * * *
32540522 TGGCTTTTGCATTATGCCTCTT-CGGCC-G-ACTCAGCGCCCGCACACTCGTTTCGTGGGTTAAC
196 CGGCTTGCGCATTATGCCT-TTCCAGCCAGCA-T-AACGCCCGCACACTCGTTTCATGGGTTAAC
* * * *
32540584 TTATGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCAGCAGTAGGATC
258 TTAGGCATACGAAGTTCATTCCCAATCTAAGATCAGACCAGACCAAAGGTTGCAGCAGCAGGATC
* * *
32540649 GATAGCACAC-AGGGGGGACCGGGCCGA-TCCCTGGCTTGCACAATCTTCCTCTTCGGTCGGCTG
323 GACAGCACACAAGGGGGGACCGGGCCGATTCCC-GGCTTGCACAATCTACCTCTCCGGTCGGCTG
**
32540712 AGCGCGCCT-CACGCTCATTTTGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCA
387 A--GCGCCTGCACGCTCATTTCATGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCA
32540776 TAC-AGAGTTAATTCCCAGTCTAAGAT
450 TACGA-AGTTAATTCCCAGTCTAAGAT
32540802 TTTGAACCAC
Statistics
Matches: 414, Mismatches: 54, Indels: 14
0.86 0.11 0.03
Matches are distributed among these distances:
511 5 0.01
512 46 0.11
513 355 0.86
514 8 0.02
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (513 bp):
AGGATCAACAGCACACAGGGGGACCGGGCCGATCCCAGGCTTGCGCATTCTGCCTCTCCGATCAG
TTGAGCACCCGCACGCCCATTTCGTGGGCTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
CCCAGCCGAACTGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGACCGGACCAATCCC
CGGCTTGCGCATTATGCCTTTCCAGCCAGCATAACGCCCGCACACTCGTTTCATGGGTTAACTTA
GGCATACGAAGTTCATTCCCAATCTAAGATCAGACCAGACCAAAGGTTGCAGCAGCAGGATCGAC
AGCACACAAGGGGGGACCGGGCCGATTCCCGGCTTGCACAATCTACCTCTCCGGTCGGCTGAGCG
CCTGCACGCTCATTTCATGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCATACGAA
GTTAATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTACGGCAGTAGGACCACCAGC
Found at i:32541495 original size:26 final size:26
Alignment explanation
Indices: 32541465--32541517 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
32541455 ATTGACTTAG
32541465 GCATACAAAGTTCATCCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
*** *
32541491 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
32541517 G
1 G
32541518 ATCAGATCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAAAGTTCATCCCCAGTCTAA
Found at i:32542687 original size:26 final size:26
Alignment explanation
Indices: 32542657--32542709 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
32542647 GTTGGCTTAG
32542657 GCATAC-GAAGTTCATT-CCATGTCTAA
1 GCATACAG-AGTTCATTCCCA-GTCTAA
32542683 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
32542709 G
1 G
32542710 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:32543390 original size:26 final size:26
Alignment explanation
Indices: 32543341--32543393 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
32543331 GTTGGCTTAG
* *
32543341 GCATGCGGAGTTCATTTCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
32543367 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
32543393 G
1 G
32543394 ATCGAACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:32543542 original size:28 final size:29
Alignment explanation
Indices: 32543477--32543550 Score: 114
Period size: 28 Copynumber: 2.6 Consensus size: 29
32543467 GAATTTACAT
* * *
32543477 GAAACTTCACATGAAGGCGTGCTTGCCAC
1 GAAACTTCACATGAAGGCATGCCTACCAC
32543506 GAAACTTCACATGAAGGCAT-CCTACCAC
1 GAAACTTCACATGAAGGCATGCCTACCAC
32543534 GAAACTTCACATGAAGG
1 GAAACTTCACATGAAGG
32543551 TGTAGGGGAC
Statistics
Matches: 42, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
28 23 0.55
29 19 0.45
ACGTcount: A:0.34, C:0.27, G:0.20, T:0.19
Consensus pattern (29 bp):
GAAACTTCACATGAAGGCATGCCTACCAC
Found at i:32543699 original size:26 final size:26
Alignment explanation
Indices: 32543663--32543715 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
32543653 GTTGACTTAG
32543663 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
32543689 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
32543715 G
1 G
32543716 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:32544188 original size:158 final size:156
Alignment explanation
Indices: 32543689--32544178 Score: 516
Period size: 159 Copynumber: 3.1 Consensus size: 156
32543679 CCCAGTCTAA
* *
32543689 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCAAGGGTTGTGGCAGCAGGATCGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGTGGCAGCAGGATCGATA
* ** * * ** *
32543754 GCACACAGGGGGGACCGAGTTGACCCCAGCTTGCGCATTCTGCCTCTCAGGTCGGCTGAGCGCCC
66 GCACGCAGGGGGGACCG-GCGGTCCCCAGCTTGCGCATTCTGCCTCTCCGACCGGCTAAGCGCCC
* * * **
32543819 GCACCCCCATTTTTTGGGTTGGCTTAG
130 GCACGCTCGTTTCGTGGGTTGGCTTAG
* * ** * * *
32543846 GCATAGGGAGTTCATT-CCATGTCTAA-ACCCCAGCCGGACCTAGGGTTGTGGCAGCGGGACCGA
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGA-CCGGACCAAGGGTTGTGGCAGCAGGATCGA
* * * *** * * *
32543909 CAGCACGCAGAGGGGGATCGGGTCGATCCTTGGCTTGCGCATTATGCCTCTCCGACCAGCTCAGC
64 TAGCACGCAG-GGGGGA-CCGG-CGGTCCCCAGCTTGCGCATTCTGCCTCTCCGACCGGCTAAGC
* * *
32543974 GCCCACACGCTCGTTTCGTGGGTTGACTTTG
126 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * *
32544005 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGACAGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGTGGCAGCAGGATCGATA
* * *
32544070 GCACGTAGGGGGGACCAGGCCGGTCCCCAGCTTGTGCATTCTGCCTCTCCGACCGGCTAAGCGCT
66 GCACGCAGGGGGGACC-GG-CGGTCCCCAGCTTGCGCATTCTGCCTCTCCGACCGGCTAAGCGCC
32544135 CGCACGCTCGTTTCGTGGGTTGGCTTAG
129 CGCACGCTCGTTTCGTGGGTTGGCTTAG
*
32544163 GCATACAGAGTTCATT
1 GCATACGGAGTTCATT
32544179 GCATGTCTAA
Statistics
Matches: 265, Mismatches: 60, Indels: 15
0.78 0.18 0.04
Matches are distributed among these distances:
156 6 0.02
157 55 0.21
158 91 0.34
159 107 0.40
160 6 0.02
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.22
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGTGGCAGCAGGATCGATA
GCACGCAGGGGGGACCGGCGGTCCCCAGCTTGCGCATTCTGCCTCTCCGACCGGCTAAGCGCCCG
CACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:32544212 original size:26 final size:26
Alignment explanation
Indices: 32544163--32544215 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
32544153 GTTGGCTTAG
*
32544163 GCATACAGAGTTCATTGCATGTCTAA
1 GCATACAGAGTTCATTCCATGTCTAA
*
32544189 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACAGAGTTCATT-CCATGTCTAA
32544215 G
1 G
32544216 ATCGGATTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGTCTAA
Found at i:32544497 original size:13 final size:13
Alignment explanation
Indices: 32544479--32544504 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
32544469 TGCGCATTAT
32544479 GCCTCTTCGGTCG
1 GCCTCTTCGGTCG
32544492 GCCTCTTCGGTCG
1 GCCTCTTCGGTCG
32544505 ACTGAGCACC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.00, C:0.38, G:0.31, T:0.31
Consensus pattern (13 bp):
GCCTCTTCGGTCG
Found at i:32544955 original size:159 final size:158
Alignment explanation
Indices: 32544570--32545072 Score: 498
Period size: 159 Copynumber: 3.2 Consensus size: 158
32544560 CCTAGTCTAA
* * * *
32544570 GCATACGGAA-TTCATTCCCAGTCTAGGATCAGATCGGATCGAGGGTTAGGACAGTAGGATCAAT
1 GCATAC-GAAGTTCATTCCCAGTCTAAGATCAGATCGGATTGAGAGTTACGACAGTAGGATCAAT
* * * * *
32544634 AGCACGTAGGGGGGACCGGGTCGATCCTCGACTTGCGCATTCTACACCTCTCCAGCTGGCTGAGC
65 AGCACGCAGGGGGGACCGGGTCGATCCTCGGCTTGCGCA-T-TATACCTCTCCGGCTGGCTAAGC
* *
32544699 GCCCGCACGCCCATTTCGTGGGTTGGCTTAG
128 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * ** * ** * * * *
32544730 GCATAGGGAGTTCATTCCTTA-TCTAAGCCCCAG-TCGGACTGAGAGTTGTGGCAG-CGAGACCG
1 GCATACGAAGTTCATTCC-CAGTCTAAG-ATCAGATCGGATTGAGAGTTACGACAGTAG-GATCA
* * * *
32544792 ATAGCACGCAGAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTATACCTCTCCGGTTAGCTCAG
63 ATAGCACGCAG-GGGGGACCGGGTCGATCCTCGGCTTGCGCATTATACCTCTCCGGCTGGCTAAG
* * * * *
32544857 TGCCTGAACGCTCGTTTCATGGGTTGACTTAG
127 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* *
32544889 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGATTGAGTGTTACGACAGTAGGATCAATA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGATCGGATTGAGAGTTACGACAGTAGGATCAATA
* * * * * * *
32544954 GCATGCAGGGGGGACTGGGTCGATCCTCGGCTTACGC-TTCTGCCTCTCCGACCGGCTAAGCGCC
66 GCACGCAGGGGGGACCGGGTCGATCCTCGGCTTGCGCATTATACCTCTCCGGCTGGCTAAGCGCC
*
32545018 CGCACGCTTGTTTCGTGGGTTGGCTTAG
131 CGCACGCTCGTTTCGTGGGTTGGCTTAG
32545046 GCATAC-AGAGTTCATT-CCATGTCTAAG
1 GCATACGA-AGTTCATTCCCA-GTCTAAG
32545073 CATATGGAGT
Statistics
Matches: 272, Mismatches: 61, Indels: 23
0.76 0.17 0.06
Matches are distributed among these distances:
156 4 0.01
157 63 0.23
158 30 0.11
159 95 0.35
160 48 0.18
161 32 0.12
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.24
Consensus pattern (158 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCAGATCGGATTGAGAGTTACGACAGTAGGATCAATA
GCACGCAGGGGGGACCGGGTCGATCCTCGGCTTGCGCATTATACCTCTCCGGCTGGCTAAGCGCC
CGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:32554269 original size:26 final size:26
Alignment explanation
Indices: 32554231--32554283 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
32554221 GGCTCAAAAT
32554231 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
32554257 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCTGTATG
32554283 C
1 C
32554284 CTAAACCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:32554759 original size:25 final size:26
Alignment explanation
Indices: 32554731--32554782 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
32554721 CTGGTTCAAT
*
32554731 CTTAGACT-AGAATGAACTCTGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
* *
32554756 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
32554782 C
1 C
32554783 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 8 0.35
26 15 0.65
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:32555261 original size:158 final size:157
Alignment explanation
Indices: 32554912--32555439 Score: 557
Period size: 157 Copynumber: 3.4 Consensus size: 157
32554902 CTACCGGTCT
* * **
32554912 TGCTGCCACAACCCTCAGTCTGGCTAGGGCTTAGACATGGAATGAACACCGTATGCCTAAGCTAA
1 TGCTGCCACAACCCTCAATCTGGCTAGAGCTTAGACATGGAATGAACTTCGTATGCCTAAGC-AA
* * * * *
32554977 CCCATGAAATGAGCGTGCGGGTGCTCG-GTCGACC-GAGAGGCAGAATGTGCAAGCCGGGGATCA
65 CCCATGAAATGAGCGTACGGGCGCT-GAGCCGACCAGAGAGGCAGAATGCGCAAGCCGAGGATCA
* * * *
32555040 GCCCAATCCCCCCTACGTGCTACCAATCC
129 GCCCGATCCCCTCTACGTGCTATCGATCC
* * * * * * **
32555069 TGCTGTCGCAACCCTTAATCCGGTTTGATATTAGAC-TAGGAATGAACTTCGTATGCCTAAGTCA
1 TGCTGCCACAACCCTCAATCTGGCTAGAGCTTAGACAT-GGAATGAACTTCGTATGCCTAAG-CA
* * * *
32555133 ACCCACGAAATGAGCGTACGGGCGCTGAGCCGGCCAGAGAGGCATAATGCGCAAGCCGAGGATCG
64 ACCCATGAAATGAGCGTACGGGCGCTGAGCCGACCAGAGAGGCAGAATGCGCAAGCCGAGGATCA
*
32555198 GCCCGATCCCCTCTATGTGCTATCGAT-C
129 GCCCGATCCCCTCTACGTGCTATCGATCC
* * *
32555226 TCGTTGCCACAACCCTCAATCTGGCTAGGGCTTAGACATGGAATGAAC-TCCTATGCCTAAGCCA
1 T-GCTGCCACAACCCTCAATCTGGCTAGAGCTTAGACATGGAATGAACTTCGTATGCCTAAG-CA
* * * * *
32555290 ACCCATGAAACGGGCGTACGGGCGCTCAGCCAATCAGAGAGGCAGAATGCGCAAGCCGAGGATCA
64 ACCCATGAAATGAGCGTACGGGCGCTGAGCCGACCAGAGAGGCAGAATGCGCAAGCCGAGGATCA
* * *
32555355 GCCCGGT-CCTTCCTGCGTGCTAT-GATCC
129 GCCCGATCCCCT-CTACGTGCTATCGATCC
** * * *
32555383 TGCTGCCACAACCCTCGGTCTGGTCCAGATCTTAGACAAGGAATGAACTTCGTATGC
1 TGCTGCCACAACCCTCAATCTGG-CTAGAGCTTAGACATGGAATGAACTTCGTATGC
32555440 TTGGACTGGA
Statistics
Matches: 302, Mismatches: 59, Indels: 19
0.79 0.16 0.05
Matches are distributed among these distances:
156 27 0.09
157 185 0.61
158 89 0.29
159 1 0.00
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (157 bp):
TGCTGCCACAACCCTCAATCTGGCTAGAGCTTAGACATGGAATGAACTTCGTATGCCTAAGCAAC
CCATGAAATGAGCGTACGGGCGCTGAGCCGACCAGAGAGGCAGAATGCGCAAGCCGAGGATCAGC
CCGATCCCCTCTACGTGCTATCGATCC
Found at i:32557262 original size:159 final size:158
Alignment explanation
Indices: 32556958--32557462 Score: 410
Period size: 159 Copynumber: 3.2 Consensus size: 158
32556948 ATGGCTCAAA
* * * * * * * **
32556958 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCGCTCA
1 ATCTTAGAATAGGAATGAACTCTGTATGCATAAGCCAACCCACGAAACGAGCGTACAAGCGCTCA
** * * * * * * *
32557023 ATCGACCGGAGAGGCAGAATGCACAAGCCAGG-GATCGGCCTGTTTCCC-CCCTGCATGCTATTG
66 GCCGACCGAAGAGGCAGAATGCACAAGCC-GGCGATCGGCCCG-ATCCCTCAC-GGATGCTGTCG
* * ** * *
32557086 ATCCTACTGCTGCAACCCTCGATCCGGTCTG
128 ATCCTGCTACCACAACCCTCGGTCCAGTCTG
* * ** ** *
32557117 ATCTTAGAATAGGAATGAACTCTGTATGCATAAGTCAACCCATGAAGTGAGCGTACGGGCGCTGA
1 ATCTTAGAATAGGAATGAACTCTGTATGCATAAGCCAACCCACGAAACGAGCGTACAAGCGCTCA
* ** * * * *
32557182 GCTGGTCGAAGAGGCATAATGCACAAGCCGGCGATCGGCCCGATCCTTCTCTGTG-TGCTGTCGG
66 GCCGACCGAAGAGGCAGAATGCACAAGCCGGCGATCGGCCCGATCCCTCAC-G-GATGCTGTCGA
*
32557246 TCCTGCTACCATAACCCTCGGTCCAG-CTG
129 TCCTGCTACCACAACCCTCGGTCCAGTCTG
** * * *
32557275 -TGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCAAGCGC
1 AT--CTTAGA-ATAGGAATGAACTCTGTATGCATAAGCCAACCCACGAAACGAGCGTACAAGCGC
* ** * *
32557338 TCAGCCGACCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCGATCCCTCACGGATGCTGTTG
63 TCAGCCGACCGAAGAGGCAGAATGCACAAGCCGGCGATCGGCCCGATCCCTCACGGATGCTGTCG
* * *
32557403 ATCTTGCTGCCACAACCCTCGGTCCAGTTTG
128 ATCCTGCTACCACAACCCTCGGTCCAGTCTG
* *
32557434 ATCTTAGACTATGAATGAACTCTGTATGC
1 ATCTTAGAATAGGAATGAACTCTGTATGC
32557463 TTAGACTAGG
Statistics
Matches: 272, Mismatches: 64, Indels: 21
0.76 0.18 0.06
Matches are distributed among these distances:
157 3 0.01
158 60 0.22
159 206 0.76
160 3 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.21
Consensus pattern (158 bp):
ATCTTAGAATAGGAATGAACTCTGTATGCATAAGCCAACCCACGAAACGAGCGTACAAGCGCTCA
GCCGACCGAAGAGGCAGAATGCACAAGCCGGCGATCGGCCCGATCCCTCACGGATGCTGTCGATC
CTGCTACCACAACCCTCGGTCCAGTCTG
Found at i:32557477 original size:26 final size:26
Alignment explanation
Indices: 32557436--32557488 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
32557426 CCAGTTTGAT
*
32557436 CTTAGACTATGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCTGTATG
*
32557462 CTTAGACTAGGGATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCTGTATG
32557488 C
1 C
32557489 CGAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.32
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCTGTATG
Found at i:32558183 original size:159 final size:157
Alignment explanation
Indices: 32557835--32558281 Score: 418
Period size: 159 Copynumber: 2.8 Consensus size: 157
32557825 AACTCCATAT
* *
32557835 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGTTCAG
1 GCTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAG
* * * * *
32557900 TCGGCCAGAGAGGCAGAATGTGCAAGCTGGGGACTGGCCTGGTCCCCCCTACGTGCTGTCGATCC
65 CCGACCAGAGAGGCAGAATGCGCAAGCTGAGGACTGGCCTGATCCCCCCTACGTGCTGTCGATCC
* * *** * *
32557965 TGCTACCGCAACCCTCAGTTTGGTTTGA
130 CGCTACCACAACCCTCAGTCCAGCTGGA
* * * * * * *
32557993 TCTTAGACTGAGAATAAACCCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCAGGCGCTGAG
1 GCTTAGACTG-GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAG
* * * *
32558058 CCGACCGGAGAGGTATAATGCGCAAG-TCGAGGA-TCGGCCCT-ATCCCCCTCTACGTGTTGTCG
65 CCGACCAGAGAGGCAGAATGCGCAAGCT-GAGGACT-GG-CCTGATCCCCC-CTACGTGCTGTCG
* *
32558120 ATCCCGCTGCCACAACCCTCAGTCCAGCTGGG
126 ATCCCGCTACCACAACCCTCAGTCCAGCTGGA
* * * * * *
32558152 GCTTAGACGTGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACAAGCGTACGGGTGCTCAA
1 GCTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAG
* * * * * * *
32558217 CCGATCAGAAAGGCAGAATGCACAAGCCGAGGA-TCGG-CTCGGTCCCCCCTATGTGCTATCGAT
65 CCGACCAGAGAGGCAGAATGCGCAAGCTGAGGACT-GGCCT-GATCCCCCCTACGTGCTGTCGAT
32558280 CC
128 CC
32558282 TACTGCTAGT
Statistics
Matches: 229, Mismatches: 51, Indels: 18
0.77 0.17 0.06
Matches are distributed among these distances:
157 6 0.03
158 99 0.43
159 122 0.53
160 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (157 bp):
GCTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGC
CGACCAGAGAGGCAGAATGCGCAAGCTGAGGACTGGCCTGATCCCCCCTACGTGCTGTCGATCCC
GCTACCACAACCCTCAGTCCAGCTGGA
Found at i:32558352 original size:26 final size:26
Alignment explanation
Indices: 32558323--32558375 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32558313 CCGATGCGAT
32558323 CTTAGAC-TGGGAATGAAATCCGTATG
1 CTTAGACAT-GGAATGAAATCCGTATG
*
32558349 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAAATCCGTATG
32558375 C
1 C
32558376 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAAATCCGTATG
Found at i:32558583 original size:513 final size:506
Alignment explanation
Indices: 32557634--32559914 Score: 1819
Period size: 513 Copynumber: 4.5 Consensus size: 506
32557624 CCTCGGTATG
*
32557634 GCTGGGGCTTAGACATGGAATGAACTCCGTATGCTTAAGCCAACCCATGAAACGAGCGTGCGGGT
1 GCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGT
* * * * * * * * *
32557699 GCTCAACCGGTTGGAGAGGCAGAATGCACAAGTCGGGGATC-GACTTGGTCCTCCCTGTGTGTTG
66 GCTCAACC-GATCGAAAGGCAGAATGCACAAGCCGAGGATCAG-CTCGGTCCCCCCTGTGTGCTA
* ** * * ****
32557763 TCGATCCTACTGCTGGTCCTGCTGCCGCAACCCTCAATCTGGTCC-A-CTCTAGACTGGGGGCAA
129 TCGATCCTACTGCTGGTCCTGCT----TAACCCTCGGTCCGATCCGATCT-TAGACTGGGAATGA
*
32557826 ACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCG
189 ACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCG
* * * * * *
32557891 GGCGTTCAGTCGGCC-AGAGAGGCAGAATGTGCAAGCTGGGGACTGGCCTGGTCCCCCCTACGTG
254 GGCGCTCAGTCGGCCGA-AGAGGCAGAATGCGCAAGCTAGGGACCGACCCGGTCCCCCC-ACGTG
* * ** * * * * *
32557955 CTGTCGATCCTGCTACCGCAACCCTCAGTTTGGTTTGATCTTAGACTGAGAATAAACCCCGTATG
317 CTGTCGATCCTACTACCACAACCCTCAGTCCGATTTGATCTTAGACTGGGAATGAACTCCATATG
* * * * * *
32558020 CCTAAGTCAACCCATGAAATGAGCGTGCAGGCGCTGAGCCGACCGGAGAGGTATAATGCGCAAGT
382 CCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAGCCAACCGGAGAGGCATAATGCGCAAGC
* * *
32558085 CGAGGATCGGCCCTATCCCCCTCTACGTGTTGTCGATCCCGCTGCCACAACCCTCAGTCCA
447 CGAGGATCGGCCCGATCCCCCTCTACATGCTGTCGATCCCGCTGCCACAACCCTC-GTCCA
* * * * *
32558146 GCTGGGGCTTAGACGTGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACAAGCGTACGGGT
1 GCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGT
* *
32558211 GCTCAACCGATCAGAAAGGCAGAATGCACAAGCCGAGGATCGGCTCGGTCCCCCCTATGTGCTAT
66 GCTCAACCGATC-GAAAGGCAGAATGCACAAGCCGAGGATCAGCTCGGTCCCCCCTGTGTGCTAT
* * *
32558276 CGATCCTACTGCTAGTCCTGCTATCACAACCCTCGGTCCGATGCGATCTTAGACTGGGAATGAAA
130 CGATCCTACTGCTGGTCCTGCT-T---AACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAAC
*
32558341 TCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACACACGAAACGAGCGTGCGGG
191 TCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGG
* *** * * ** * *
32558406 CGCTCAGTCGACCGAAGATTTAGAATGCGCAAGGTAGGCACCGGTCTGGTCCCCCCAGCATGCTG
256 CGCTCAGTCGGCCGAAGAGGCAGAATGCGCAAGCTAGGGACCGACCCGGTCCCCCCA-CGTGCTG
** * *
32558471 TCGATCCTACTACCGTAACCCTTAGTCCGATTTGATCTTAGGCTGGGAATGAACTCCATATGCCT
320 TCGATCCTACTACCACAACCCTCAGTCCGATTTGATCTTAGACTGGGAATGAACTCCATATGCCT
*** * *
32558536 AAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAGCTGGCCGGAGAGGCATAATGCGCAAGTCGG
385 AAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAGCCAACCGGAGAGGCATAATGCGCAAGCCGA
* * * * * * * **
32558601 GGATCAGCCCGATTCCCCTCTGCGTGCT-ACTGGTCCCGCTGCCATAACCCTCGATCTG
450 GGATCGGCCCGATCCCCCTCTACATGCTGTC-GATCCCGCTGCCACAACCCTCG-TCCA
* * * * * *
32558659 GCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCATGGGGGC
1 GCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGT
* ** ** * * ** * * *
32558724 ACTCAGTCGGCCGTAGAGGTAGAATGTGCAAGCC-AGGGATCAGCCCGGTCCCCCCTGCGTGCTG
66 GCTCAACCGATCG-AAAGGCAGAATGCACAAGCCGA-GGATCAGCTCGGTCCCCCCTGTGTGCTA
* *
32558788 TCGATCCTA---CT-GT-C-G--TAACCCTCAGTCCTG-TCCGATCTTAGGCTGGGAATGAACTC
129 TCGATCCTACTGCTGGTCCTGCTTAACCCTCGGTCC-GATCCGATCTTAGACTGGGAATGAACTC
* * * * *
32558844 TGTATGCTTAGA-TTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGC
193 CGTATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGC
* * * * * * * *
32558908 ACTCAG-CTGGCCGGAGAGGCAGAATGCGCAAGCCAAGGATCGACCCGATCCCCATCTAGGTGCT
257 GCTCAGTC-GGCCGAAGAGGCAGAATGCGCAAGCTAGGGACCGACCCGGTCCCC--CCACGTGCT
* * * * * * ** * *
32558972 -ACCAGTCCTGCTGCCACAACCCTCAGT-CTAGTTGGGGCTTAGGCAT-GGAATGAACTCCCTAT
319 GTCGA-TCCTACTACCACAACCCTCAGTCCGA-TTTGATCTTAGAC-TGGGAATGAACTCCATAT
* * * * * * * * * * * *
32559034 GGCTAAGCCAACCCACGTAACGGGCATGCGGGTGCTAACCCAACCGAAGAGACAGAATGCGTAAG
381 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAGCCAACCGGAGAGGCATAATGCGCAAG
* * * * * * ** * *
32559099 CCGGGGATTGACTCGGTCCCCC-CTACATGATACCGATCCTGCTGCCGCAACCCTCTGTCCA
446 CCGAGGATCGGCCCGATCCCCCTCTACATGCTGTCGATCCCGCTGCCACAACCCTC-GTCCA
** * * * * *
32559160 GTCT-GATCTTAGAC-TGAGAATGAACTCTGTATG-CTTAG---A--C-TGGAGATGAAC-T-CT
1 G-CTGGGGCTTAGACATG-GAATGAACTCCGTATGCCTAAGCCAACCCAT-GAAACGAGCGTGC-
** ** * ** * *
32559214 GTATGC-CTAA---ATC--AACCCATGAA-ACGTAAGCCGAGGATC-GATCTGGTCCCTCCTGTG
62 GGGTGCTC-AACCGATCGAAAGGCA-GAATGCACAAGCCGAGGATCAGCTC-GGTCCCCCCTGTG
* * * * *
32559271 TGCTACCGATCCTGCTGCTGGTCCTGCTGTAGTAACCCTCGGTGCGGTCCAATCTTAGACTGGGA
124 TGCTATCGATCCTACTGCTGGTCCTGC--T--TAACCCTCGGTCCGATCCGATCTTAGACTGGGA
* * * *
32559336 ATGAACTCCGTATGCTTAGATATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACAAGCG
185 ATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCG
* * *
32559401 TGCGGGCAG-TCAGAT-GGTC-AGAGAGGCAGAATGCGCAAG-TCGGGGACCGACCCAGTCCCCC
250 TGCGGGC-GCTCAG-TCGGCCGA-AGAGGCAGAATGCGCAAGCT-AGGGACCGACCCGGTCCCCC
* * * * * * *
32559462 TCACGTGCTGTTGATCCTACTATCACAACCCTCGGTCCGGTCTAATCTTAGACTAGGAATGAACT
311 -CACGTGCTGTCGATCCTACTACCACAACCCTCAGTCCGATTTGATCTTAGACTGGGAATGAACT
* * *
32559527 CCATATGCCTAAGTCAACCCACGAAACGAGCGTTCGAGG-GCTGAGCCAGCCAGAGAGGCATAAT
375 CCATATGCCTAAGTCAACCCACGAAACGAGCGTGCG-GGCGCTGAGCCAACCGGAGAGGCATAAT
* * ** * * *
32559591 GCGCAAGCCAAGGATCGGCCCGATCCTCCTCCGCATGCTGTAGGTCCCGCTGCCACAATCCTCCG
439 GCGCAAGCCGAGGATCGGCCCGATCCCCCTCTACATGCTGTCGATCCCGCTGCCACAACCCT-CG
32559656 TCC-
503 TCCA
* * * * *
32559659 GACTGGGGCTTAGAAATGGAATGAACTCCCTACGCCTAAGCCAACCCACGAAACGGGCGTGCGGG
1 G-CTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGG
* * * * ** * * **
32559724 TGCTCAACCGGTCGAAGAGGCAGAGTTCGCAAGATGGGGATCAGCCCGGTCCCCCCTACGTGCTA
65 TGCTCAACCGATCGAA-AGGCAGAATGCACAAGCCGAGGATCAGCTCGGTCCCCCCTGTGTGCTA
* *
32559789 TCGAT-C--CTG-TTGT-C-G--TAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCC
129 TCGATCCTACTGCTGGTCCTGCTTAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCC
* *
32559846 GTATGCTTAGAC-TGGGTATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCG
194 GTATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCG
32559910 CTCAG
258 CTCAG
32559915 CCAGCCGGAG
Statistics
Matches: 1383, Mismatches: 307, Indels: 169
0.74 0.17 0.09
Matches are distributed among these distances:
487 2 0.00
488 35 0.03
489 4 0.00
491 3 0.00
492 2 0.00
493 2 0.00
494 6 0.00
495 7 0.01
497 1 0.00
498 2 0.00
499 113 0.08
500 188 0.14
501 285 0.21
502 116 0.08
503 3 0.00
504 2 0.00
506 6 0.00
507 9 0.01
508 4 0.00
509 5 0.00
510 7 0.01
511 2 0.00
512 151 0.11
513 423 0.31
514 5 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (506 bp):
GCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGT
GCTCAACCGATCGAAAGGCAGAATGCACAAGCCGAGGATCAGCTCGGTCCCCCCTGTGTGCTATC
GATCCTACTGCTGGTCCTGCTTAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGT
ATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTC
AGTCGGCCGAAGAGGCAGAATGCGCAAGCTAGGGACCGACCCGGTCCCCCCACGTGCTGTCGATC
CTACTACCACAACCCTCAGTCCGATTTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGTCA
ACCCACGAAACGAGCGTGCGGGCGCTGAGCCAACCGGAGAGGCATAATGCGCAAGCCGAGGATCG
GCCCGATCCCCCTCTACATGCTGTCGATCCCGCTGCCACAACCCTCGTCCA
Found at i:32558853 original size:26 final size:26
Alignment explanation
Indices: 32558824--32558876 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
32558814 CCTGTCCGAT
* *
32558824 CTTAGGCTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
32558850 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
32558876 C
1 C
32558877 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:32559022 original size:343 final size:343
Alignment explanation
Indices: 32558507--32559239 Score: 891
Period size: 343 Copynumber: 2.1 Consensus size: 343
32558497 CCGATTTGAT
* * * * * *
32558507 CTTAGGCTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAGC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCACTCAGC
* * ** **
32558572 TGGCCGGAGAGGCATAATGCGCAAGTCGGGGATCAGCCCGATTCCCCTCTGCGTGCTACTGGTCC
66 TGGCCGGAGAGGCAGAATGCGCAAGCCAAGGATCAGCCCGATTCCCCTCTGCGTGCTACCAGTCC
* *
32558637 CGCTGCCATAACCCTCGATCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
131 CGCTGCCACAACCCTCGATCTAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
* * * * ** ** * ** *
32558702 CCCATGAAATGGGCATGGGGGCACTCAGTCGGCCGTAGAGGTAGAATGTGCAAGCCAGGGATCAG
196 CCCACGAAACGGGCATGCGGGCACTAACCCAACCGAAGAGACAGAATGCGCAAGCCAGGGAT-AG
* * * ** * * * *
32558767 -CCCGGTCCCCCCTGCGTGCTGTCGATCCTACTGTCGTAACCCTCAGTCCTGTCCGATCTTAGGC
260 ACCCGGTCCCCCCTACATGATACCGATCCTACTGCCGCAACCCTCAGTCCAGTCCGATCTTAGAC
*
32558831 TGGGAATGAACTCTGTATG
325 TGAGAATGAACTCTGTATG
*
32558850 CTTAGATTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCACTCAGC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCACTCAGC
32558915 TGGCCGGAGAGGCAGAATGCGCAAGCCAAGGATC-GACCCGA-TCCCCATCTAG-GTGCTACCAG
66 TGGCCGGAGAGGCAGAATGCGCAAGCCAAGGATCAG-CCCGATTCCCC-TCT-GCGTGCTACCAG
* * * *
32558977 TCCTGCTGCCACAACCCTC-AGTCTAGTTGGGGCTTAGGCATGGAATGAACTCCCTATGGCTAAG
128 TCCCGCTGCCACAACCCTCGA-TCTAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAG
* ** * *
32559041 CCAACCCACGTAACGGGCATGCGGGTGCTAACCCAACCGAAGAGACAGAATGCGTAAGCCGGGGA
192 CCAACCCACGAAACGGGCATGCGGGCACTAACCCAACCGAAGAGACAGAATGCGCAAGCCAGGGA
* * * * *
32559106 TTGACTCGGTCCCCCCTACATGATACCGATCCTGCTGCCGCAACCCTCTGTCCAGTCTGATCTTA
257 TAGACCCGGTCCCCCCTACATGATACCGATCCTACTGCCGCAACCCTCAGTCCAGTCCGATCTTA
32559171 GACTGAGAATGAACTCTGTATG
322 GACTGAGAATGAACTCTGTATG
* * * *
32559193 CTTAGACTGGAGATGAACTCTGTATGCCTAAATCAACCCATGAAACG
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
32559240 TAAGCCGAGG
Statistics
Matches: 329, Mismatches: 56, Indels: 10
0.83 0.14 0.03
Matches are distributed among these distances:
342 8 0.02
343 320 0.97
344 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (343 bp):
CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCACTCAGC
TGGCCGGAGAGGCAGAATGCGCAAGCCAAGGATCAGCCCGATTCCCCTCTGCGTGCTACCAGTCC
CGCTGCCACAACCCTCGATCTAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
CCCACGAAACGGGCATGCGGGCACTAACCCAACCGAAGAGACAGAATGCGCAAGCCAGGGATAGA
CCCGGTCCCCCCTACATGATACCGATCCTACTGCCGCAACCCTCAGTCCAGTCCGATCTTAGACT
GAGAATGAACTCTGTATG
Found at i:32559196 original size:26 final size:26
Alignment explanation
Indices: 32559167--32559219 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
32559157 CCAGTCTGAT
32559167 CTTAGACT-GAGAATGAACTCTGTATG
1 CTTAGACTGGAG-ATGAACTCTGTATG
32559193 CTTAGACTGGAGATGAACTCTGTATG
1 CTTAGACTGGAGATGAACTCTGTATG
32559219 C
1 C
32559220 CTAAATCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGAGATGAACTCTGTATG
Found at i:32559854 original size:26 final size:26
Alignment explanation
Indices: 32559825--32559877 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
32559815 CCGATCCGAT
32559825 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
32559851 CTTAGACTGGGTATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
32559877 C
1 C
32559878 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:32560072 original size:26 final size:26
Alignment explanation
Indices: 32560034--32560086 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32560024 TCGGTCTGAT
*
32560034 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
32560060 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
32560086 C
1 C
32560087 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:32560435 original size:159 final size:158
Alignment explanation
Indices: 32560267--32560562 Score: 348
Period size: 158 Copynumber: 1.9 Consensus size: 158
32560257 CACGAAATGA
** * **
32560267 GCGTACGGGCACT-AAGCCGACCGGAGAGGCATAATGTGCAAGCC-AGGGATCCGTTCGATCCCC
1 GCGTACGGGCACTCAA-CCGACCAAAGAGGCAGAATGCACAAGCCGA-GGATCCGTTCGATCCCC
* * * * *
32560330 CTCTGCGTGCTGTCGGTCCCGCTGCCATAACCCTCGATCTGG-CTGGGGCTTAGACATGG-AATG
64 C-CTGCGTGCTGCCGATCCAGCTACCATAACCCTCGATCTGGTCT-GAGCTTAGAC-TGGTAATG
*
32560393 AACTCCCTATGCCTAAGCCAACAAACCAAACAG
126 AACTCCATATGCCTAAGCCAACAAACCAAACAG
* ** * * *
32560426 GCGTGCGGGCACTCAACCGGTCAAAGAGGCAGAATGCATAAGTCGAGGATCGGTTCGATCCCCCC
1 GCGTACGGGCACTCAACCGACCAAAGAGGCAGAATGCACAAGCCGAGGATCCGTTCGATCCCCCC
* *
32560491 TGCGTGCTGCCGATCCAGCTACCGTAACCCTCGATCTGGTCTGATCTTAGACTGGTAATGAACTC
66 TGCGTGCTGCCGATCCAGCTACCATAACCCTCGATCTGGTCTGAGCTTAGACTGGTAATGAACTC
32560556 CATATGC
131 CATATGC
32560563 TTAGACTGGG
Statistics
Matches: 114, Mismatches: 19, Indels: 9
0.80 0.13 0.06
Matches are distributed among these distances:
157 3 0.03
158 58 0.51
159 50 0.44
160 3 0.03
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.20
Consensus pattern (158 bp):
GCGTACGGGCACTCAACCGACCAAAGAGGCAGAATGCACAAGCCGAGGATCCGTTCGATCCCCCC
TGCGTGCTGCCGATCCAGCTACCATAACCCTCGATCTGGTCTGAGCTTAGACTGGTAATGAACTC
CATATGCCTAAGCCAACAAACCAAACAG
Found at i:32560577 original size:26 final size:26
Alignment explanation
Indices: 32560536--32560588 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
32560526 CTGGTCTGAT
*
32560536 CTTAGACTGGTAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
32560562 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
32560588 C
1 C
32560589 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:32560626 original size:711 final size:708
Alignment explanation
Indices: 32559245--32560880 Score: 1940
Period size: 711 Copynumber: 2.3 Consensus size: 708
32559235 AAACGTAAGC
* * * * * *
32559245 CGAGGATCGATCTGGTCCCTCCTGTGTGCTACCGATCCTGCTGCTGGTCCTGCTGTAGTAACCCT
1 CGAGGATCGCTC-GGTCCCTCCTGCGTGCTGCCGATCCTGTTGCTGGTCCTGCTATCGTAACCCT
* * *
32559310 CGGTGCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGATATGGAATGAACTCCATAT
65 CGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCATAT
* * * * *
32559375 GCCTAAGCCAACCCATGAAACAAGCGTGCGG-GCAGTCAGATGGTCAGAGAGGCAGAATGCGCAA
130 GCCTAAGCCAACCCACGAAACGAGCATGCGGTGC--TCAGATGATCGGAGAGGCAGAATGCGCAA
* * ** * * **
32559439 GTCGGGGACCGACCC-AGTCCCCCTCACGTGCTGTTGATCCTACTATCACAACCCTCGGTCCGGT
193 GCCGGGGACCGACCCGA-TCCCCCTCACGTGCTATCAATCCTACTATCACAACCATCAGTCCAAT
* * * *
32559503 CTAATCTTAGACTAGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTTCGAGGGC
257 CCAATCTTAGACTAGGAATGAACTCCACATGCCTAAGTCAACCCACGAAACGAGCGTACGAGGAC
* * *
32559568 TGAGCCAGCCAGAGAGGCATAATGCGCAAGCCAAGGATCGGCCCGATCCTCCTCCGCATGCTGTA
322 TAAGCCAGCCAGAGAGGCATAATGCGCAAGCCAAGGATCCGCCCGATCCCCCTCCGCATGCTGTA
*
32559633 GGTCCCGCTGCCACAATCCTCCGTCCGACTGGGGCTTAGAAATGGAATGAACTCCCTACGCCTAA
387 GGTCCCGCTGCCACAACCCTCCGTCCGACTGGGGCTTAGAAATGGAATGAACTCCCTACGCCTAA
** * * ** * * * * *
32559698 GCCAACCCACGAAACGGGCGTGCGGGTGCTCAACCGGTCGAAGAGGCAGAGTTCGCAAGATGGGG
452 GCCAACAAACCAAACAGGCGTGCGGGCACTCAACCGGTCAAAGAGGCAGAATGCACAAGATGAGG
* * * * **
32559763 ATCAGCCCGGTCCCCCCTACGTGCTATCGATCCTGTTGTCGTAACCCTCGATCCGATCCGATCTT
517 ATCAGCCCGATCCCCCCTACGTGCTACCGATCCAGCTACCGTAACCCTCGATCCGATCCGATCTT
* *
32559828 AGACTGGGAATGAACTCCGTATGCTTAGACTGGGTATGAACTCCGTATGCCTAAGCCAACCCACG
582 AGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGCCAACCCACG
* * * *
32559893 AAACAAGCGTGCGGGCGCTCAGCCAG-CCGGAGAGATCGATCAGAGAGGCAGAATACGTAAAT
647 AAACAAGCGTACGGGCGCTCAG-CAGACCGGAGAGACCAACCAGAGAGGCAGAATACGTAAAT
* ** * * *
32559955 CGAGGATCAGCTCGGTCCCTCCTGCGTGTTGCCGATCCTGTTGCTGGTTTTACTCTCTTAACCCT
1 CGAGGATC-GCTCGGTCCCTCCTGCGTGCTGCCGATCCTGTTGCTGGTCCTGCTATCGTAACCCT
* *
32560020 CGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCATAT
65 CGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCATAT
** *
32560085 GCCTAAGCCAACCCACGAAACGAGCATGCAGGTGCTCAGCCGATCGGAGAGGCAAAATGCGCAAG
130 GCCTAAGCCAACCCACGAAACGAGCATGC-GGTGCTCAGATGATCGGAGAGGCAGAATGCGCAAG
* **
32560150 CCGGGGACCGACCCGATCCTGCCTTGCGTGCTATCAATCCTACTATCACAACCATCAGTCCAATC
194 CCGGGGACCGACCCGATCC-CCCTCACGTGCTATCAATCCTACTATCACAACCATCAGTCCAATC
* * * * *
32560215 CGATCTTAGACTGGGAATGTACTCCGCATGCCTAAGTCAACCCACGAAATGAGCGTACG-GGCAC
258 CAATCTTAGACTAGGAATGAACTCCACATGCCTAAGTCAACCCACGAAACGAGCGTACGAGG-AC
* * * ** * *
32560279 TAAGCC-GACCGGAGAGGCATAATGTGCAAGCCAGGGATCCGTTCGATCCCCCTCTGCGTGCTGT
322 TAAGCCAG-CCAGAGAGGCATAATGCGCAAGCCAAGGATCCGCCCGATCCCCCTCCGCATGCTGT
* * * * * *
32560343 CGGTCCCGCTGCCATAACCCT-CGATCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCT
386 AGGTCCCGCTGCCACAACCCTCCG-TCCGACTGGGGCTTAGAAATGGAATGAACTCCCTACGCCT
*
32560407 AAGCCAACAAACCAAACAGGCGTGCGGGCACTCAACCGGTCAAAGAGGCAGAATGCATAAG-TCG
450 AAGCCAACAAACCAAACAGGCGTGCGGGCACTCAACCGGTCAAAGAGGCAGAATGCACAAGAT-G
* ** * * * * *
32560471 AGGATCGGTTCGATCCCCCCTGCGTGCTGCCGATCCAGCTACCGTAACCCTCGATCTGGTCTGAT
514 AGGATCAGCCCGATCCCCCCTACGTGCTACCGATCCAGCTACCGTAACCCTCGATCCGATCCGAT
* *
32560536 CTTAGACTGGTAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCC
579 CTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGCCAACCC
* * * * * * * *
32560601 ATGAAACGAGCGTACGGGTGCTCAGCAGATCGGAGAGGCCAACCGGAGAGGCAGAATGCGTAAGT
644 ACGAAACAAGCGTACGGGCGCTCAGCAGACCGGAGAGACCAACCAGAGAGGCAGAATACGTAAAT
* * * *** * * *
32560666 CGGGGATCGACCCGGTCCCCCCTGCGTGCTGGTAATCCTGTTGTTGGTCCTGCTATCGCAGCCCT
1 CGAGGATCG-CTCGGTCCCTCCTGCGTGCTGCCGATCCTGTTGCTGGTCCTGCTATCGTAACCCT
* * * * * *
32560731 CTGTCCGATCCGATCTTAGATTGGGAATGAACTCTGTATGCTCAGACGTGGAATGAACTCCATAT
65 CGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCATAT
* * * *
32560796 GCCGT-AGCCAACCCACAAAACGAGCGTATG-GGTGCTCAAATGATCGAAGAGGCAGAATGCACA
130 GCC-TAAGCCAACCCACGAAACGAGC--ATGCGGTGCTCAGATGATCGGAGAGGCAGAATGCGCA
* *
32560859 AGCCGAGGATCGACCCGATCCC
192 AGCCGGGGACCGACCCGATCCC
32560881 TCCTGCATGC
Statistics
Matches: 777, Mismatches: 135, Indels: 28
0.83 0.14 0.03
Matches are distributed among these distances:
710 188 0.24
711 583 0.75
712 3 0.00
713 3 0.00
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.20
Consensus pattern (708 bp):
CGAGGATCGCTCGGTCCCTCCTGCGTGCTGCCGATCCTGTTGCTGGTCCTGCTATCGTAACCCTC
GGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCATATG
CCTAAGCCAACCCACGAAACGAGCATGCGGTGCTCAGATGATCGGAGAGGCAGAATGCGCAAGCC
GGGGACCGACCCGATCCCCCTCACGTGCTATCAATCCTACTATCACAACCATCAGTCCAATCCAA
TCTTAGACTAGGAATGAACTCCACATGCCTAAGTCAACCCACGAAACGAGCGTACGAGGACTAAG
CCAGCCAGAGAGGCATAATGCGCAAGCCAAGGATCCGCCCGATCCCCCTCCGCATGCTGTAGGTC
CCGCTGCCACAACCCTCCGTCCGACTGGGGCTTAGAAATGGAATGAACTCCCTACGCCTAAGCCA
ACAAACCAAACAGGCGTGCGGGCACTCAACCGGTCAAAGAGGCAGAATGCACAAGATGAGGATCA
GCCCGATCCCCCCTACGTGCTACCGATCCAGCTACCGTAACCCTCGATCCGATCCGATCTTAGAC
TGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGCCAACCCACGAAAC
AAGCGTACGGGCGCTCAGCAGACCGGAGAGACCAACCAGAGAGGCAGAATACGTAAAT
Found at i:32560908 original size:15 final size:16
Alignment explanation
Indices: 32560881--32560910 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
32560871 ACCCGATCCC
32560881 TCCTGCATGCTGTCCG
1 TCCTGCATGCTGTCCG
32560897 TCCTGC-TGCTGTCC
1 TCCTGCATGCTGTCC
32560911 TGCTACCGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.03, C:0.40, G:0.23, T:0.33
Consensus pattern (16 bp):
TCCTGCATGCTGTCCG
Found at i:32561201 original size:158 final size:159
Alignment explanation
Indices: 32560908--32561319 Score: 384
Period size: 158 Copynumber: 2.6 Consensus size: 159
32560898 CCTGCTGCTG
* * * *
32560908 TCCTGCTACCGTAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
1 TCCTGCTACCGTAACCCTCAGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTAAGCCCAAGC
* ** * * * **
32560973 CAACCGAGGAAATGAGCGTACGGGCGCTCAGCCGGTCGGAGAGATAGAATGTGCAAGCCAGGGAT
66 CAACCCACAAAATGAGCGTACGGGCGCTCAGCAGGTCGAAGAGACAGAATGCACAAGCCAGGGAT
* *
32561038 TGACCCAGTCCGCC-CTGCGTGCTATCGA
131 CGACCCAGTCCGCCTCTGCGTGCTACCGA
* * *
32561066 TCCTGCTACCGTAACCCTCAGTCTGGTCTGATCTTAGACTAGGAATGAATTCCGTAAGCCCAAGT
1 TCCTGCTACCGTAACCCTCAGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTAAGCCCAAGC
* * * * * * *
32561131 CAACCCACAAAATGAGTGTACGGGTGTTGAGCAGGTCGAAGAGGCATAATGCACAAGTC-GAGGA
66 CAACCCACAAAATGAGCGTACGGGCGCTCAGCAGGTCGAAGAGACAGAATGCACAAGCCAG-GGA
* *
32561195 TCGACCCGGTCTGCCTCTGCGTGCTACCGA
130 TCGACCCAGTCCGCCTCTGCGTGCTACCGA
* * ** * ** * * *
32561225 TCCCGCTGCCACAACCCTCCA-TCCAG-CTGGGGCTTAGAC-ATGGAATGAACTCCCTATGCCTA
1 TCCTGCTACCGTAACCCT-CAGTCCGGTCT-GATCTTAGACTA-GGAATGAACTCCGTAAGCCCA
* * * * *
32561287 AGCCAAGCCACGAAATGAGTGTGCGGGCACTCA
63 AGCCAACCCACAAAATGAGCGTACGGGCGCTCA
32561320 ACCGACTGAA
Statistics
Matches: 203, Mismatches: 46, Indels: 9
0.79 0.18 0.03
Matches are distributed among these distances:
157 1 0.00
158 120 0.59
159 80 0.39
160 2 0.01
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (159 bp):
TCCTGCTACCGTAACCCTCAGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTAAGCCCAAGC
CAACCCACAAAATGAGCGTACGGGCGCTCAGCAGGTCGAAGAGACAGAATGCACAAGCCAGGGAT
CGACCCAGTCCGCCTCTGCGTGCTACCGA
Found at i:32561444 original size:26 final size:26
Alignment explanation
Indices: 32561403--32561455 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32561393 CAGGTCTGAC
*
32561403 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
32561429 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
32561455 C
1 C
32561456 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:32561858 original size:489 final size:494
Alignment explanation
Indices: 32560940--32561992 Score: 1090
Period size: 489 Copynumber: 2.1 Consensus size: 494
32560930 CCGGTCTGAT
* * * * *
32560940 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAGGAAATGAGCGTACGGGCGCTCAGC
1 CTTAGACTGGG-ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACAGGCGCTCAGC
* * ** ** *
32561005 CGGTCGGAGAGATAGAATGTGCAAGCCAGGGATTGACCCAGTCCGCCCTGCGTGCTATCGATCCT
65 CGGCCGAAGAGATAGAATGCACAAGCCAGGGACCGACCCAGTCCCCCCTGCGTGCTATCGATCCT
* * * ** * * * * *
32561070 GCTACCGTAACCCTCAGTCTGGTCTGATCTTAGACTAGGAATGAATTCCGTAAGCCCAAGTCAAC
130 ACTACCGCAACCCTCAGTCTAGTCCAATCATAGACTAAGAACGAACTCCGTAAGCACAAGTCAAC
* * * * * *
32561135 CCACAAAATGAGTGTACGGGTGTTGAGCAGGTCGAAGAGGCATAATGCACAAGTCGAGGATCGAC
195 CCACAAAACGAGCGTACAGGTGCTGAGCAGATCGAAGAGGCATAATACACAAGTCGAGGATCGAC
* ** *
32561200 CCGGTCTGCCTCTGCGTGCTACCGATCCCGCTGCCACAACCCTCCATCCAGCTGGGGCTTAGACA
260 CCGATCCCCCTCTGCGTGCTACCGATCCCACTGCCACAACCCTCCATCCAGCTGGGGCTTAGACA
* * * *
32561265 TGGAATGAACTCCCTATGCCTAAGCCAAGCCACGAAATGAGTGTGCGGGCACTCAACCGACTGAA
325 TGGAATGAACTCCCTATGCCTAAGCCAAGCCACAAAATGAGCGTGCAGGCACTCAACCAACTGAA
* * * * * *
32561330 AAGGTAGAATGTGCAAGCCAGGGATTGGCTCCGTCCCCCC-TGC-A-TG-CTGC-C-GTAACCCT
390 AAGGCAGAATGCGCAAGCCAGGAATCGACTCCGTCCCCCCGTGCTACTGACTGCACTGCAACCCT
* *
32561389 CGGTCAGGTCTGACCTTAGACTGGGAATGAACTTCGTATG
455 CGGTCAGATCTGACCTTAGACTGGGAATGAACTCCGTATG
* *
32561429 CTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGTGCTCAGC
1 CTTAGACT-GGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACAGGCGCTCAGC
* * * * ** *
32561494 TGGCCGAAGAGGTAGAATGCACAAGCCGGGGACCCG-TCTGGTCCCCCCTGCGTGCTATTGATCC
65 CGGCCGAAGAGATAGAATGCACAAGCCAGGGA-CCGACCCAGTCCCCCCTGCGTGCTATCGATCC
* * * *
32561558 TACTACTGCAACCCTC-GATCTAGTCCAATCATAGACTAAGAACGAACTCCGTATGCATAAGTTA
129 TACTACCGCAACCCTCAG-TCTAGTCCAATCATAGACTAAGAACGAACTCCGTAAGCACAAGTCA
** * * *
32561622 ACCCATGAAACGAGCGTGCAGGTGCTGAGCCGATCGAAGAGGCATAATACGCAAGTCGAGGATC-
193 ACCCACAAAACGAGCGTACAGGTGCTGAGCAGATCGAAGAGGCATAATACACAAGTCGAGGATCG
* ** * ***
32561686 AGCTCGATCCCCCTCTGCGTGCTGTCGATCCCACTGCCATAACCCTTGGTCC-GACTGGGGCTTA
258 A-CCCGATCCCCCTCTGCGTGCTACCGATCCCACTGCCACAACCCTCCATCCAG-CTGGGGCTTA
* * ** *
32561750 GATATGGAATGAACTCCCTATGCCTAAGCCAAGCCACAAAATGGGCGTGCAGGTGCTCAGCCAA-
321 GACATGGAATGAACTCCCTATGCCTAAGCCAAGCCACAAAATGAGCGTGCAGGCACTCAACCAAC
* *
32561814 TCGGAGAGGCAGAATGCGCAAGCC-GTGAATCGAC-CCGATCCCCCCTGTGTGCTACTGATCCTG
386 T-GAAAAGGCAGAATGCGCAAGCCAG-GAATCGACTCCG-TCCCCCC---GTGCTACTGA--CTG
* * * * *
32561877 CTACTGCAACCGTCGGTCTGATCTGATCTTAGACTTGGAATGAGCTCCGTATG
443 C-ACTGCAACCCTCGGTCAGATCTGACCTTAGACTGGGAATGAACTCCGTATG
* * * *
32561930 CTTAGACTGGGGAAGAACTCTGTATGCCTAAGTCAACCCATGAAACAAGCGTAC-GAGCGCTCA
1 CTTAGACT-GGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACAG-GCGCTCA
32561993 ATCGGCTGGA
Statistics
Matches: 455, Mismatches: 88, Indels: 30
0.79 0.15 0.05
Matches are distributed among these distances:
488 8 0.02
489 337 0.74
490 4 0.01
493 3 0.01
494 1 0.00
495 2 0.00
498 4 0.01
500 2 0.00
501 94 0.21
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.20
Consensus pattern (494 bp):
CTTAGACTGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACAGGCGCTCAGCC
GGCCGAAGAGATAGAATGCACAAGCCAGGGACCGACCCAGTCCCCCCTGCGTGCTATCGATCCTA
CTACCGCAACCCTCAGTCTAGTCCAATCATAGACTAAGAACGAACTCCGTAAGCACAAGTCAACC
CACAAAACGAGCGTACAGGTGCTGAGCAGATCGAAGAGGCATAATACACAAGTCGAGGATCGACC
CGATCCCCCTCTGCGTGCTACCGATCCCACTGCCACAACCCTCCATCCAGCTGGGGCTTAGACAT
GGAATGAACTCCCTATGCCTAAGCCAAGCCACAAAATGAGCGTGCAGGCACTCAACCAACTGAAA
AGGCAGAATGCGCAAGCCAGGAATCGACTCCGTCCCCCCGTGCTACTGACTGCACTGCAACCCTC
GGTCAGATCTGACCTTAGACTGGGAATGAACTCCGTATG
Found at i:32562287 original size:26 final size:26
Alignment explanation
Indices: 32562251--32562309 Score: 77
Period size: 26 Copynumber: 2.3 Consensus size: 26
32562241 CTCGGTCCGG
32562251 TCTG-ATG-TTAGACTAGGAATGAAC
1 TCTGTATGCTTAGACTAGGAATGAAC
* *
32562275 TCTGTATGCTTAGACTGGGGATGAAC
1 TCTGTATGCTTAGACTAGGAATGAAC
*
32562301 TCCGTATGC
1 TCTGTATGC
32562310 CTATGTCAAC
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
24 4 0.13
25 3 0.10
26 23 0.77
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (26 bp):
TCTGTATGCTTAGACTAGGAATGAAC
Found at i:32562975 original size:26 final size:26
Alignment explanation
Indices: 32562937--32562989 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32562927 GGCTCAAACT
32562937 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
32562963 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
32562989 C
1 C
32562990 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:32563311 original size:26 final size:26
Alignment explanation
Indices: 32563282--32563332 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
32563272 AATCCGATCT
*
32563282 TAGACTGGGAATGAACTCCGTATGCA
1 TAGACTGGGAATGAACTCCATATGCA
*
32563308 TAGACTGGGGATGAACTCCATATGC
1 TAGACTGGGAATGAACTCCATATGC
32563333 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.24
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCATATGCA
Found at i:32563516 original size:26 final size:26
Alignment explanation
Indices: 32563477--32563529 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32563467 TCGGTTCGAT
32563477 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
*
32563503 CTTAGACATG-GAATGAACTCTGTATG
1 CTTAGAC-TGAGAATGAACTCCGTATG
32563529 C
1 C
32563530 CAAAGCAAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:32563967 original size:26 final size:26
Alignment explanation
Indices: 32563938--32563988 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
32563928 CCGATCCGAT
32563938 CTTAGACTGGGAATGAACTCCGTATA
1 CTTAGACTGGGAATGAACTCCGTATA
*
32563964 CTTAGACTGGGGATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
32563989 CCCTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATA
Found at i:32564855 original size:26 final size:26
Alignment explanation
Indices: 32564826--32564878 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
32564816 CCGGTCTGAT
32564826 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
32564852 CTTAGACTTGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
32564878 C
1 C
32564879 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:32565601 original size:159 final size:157
Alignment explanation
Indices: 32565255--32565633 Score: 411
Period size: 158 Copynumber: 2.4 Consensus size: 157
32565245 AACTTCATAT
* * *
32565255 GCTTAGACGTAGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAG
1 GCTTAGAC-TGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAA
* * *
32565320 CCGGCCGAAGAGGCAGAATGCGCAAGCTAGGGACTGGCCCGATCCCCCCTGTGTGCTGTCGATCC
65 CCGGCCGAAGAGGCAGAATGCGCAAGCTAGGGACTGACCCGATCCCCCCTGCGTGCTGCCGATCC
* * * * *
32565385 TACTATCGCAACCCTCGATCCGGTTCGA
130 CACTACCACAACCCTCGATCCGGCTAGA
* * * * ** *
32565413 TCTTAGACTGGGAATGAACTCTGTATGCCTATGTCAACCCACGAAATGAGCGTGCGGGTGCTGAA
1 GCTTAGACT-GGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAA
* * * * * * *
32565478 CTGGCCGGAGAGGCATAATGCGCAAGCTGGGGA-TCGACCCGTTCCCTCTCTGCGTGCTGCCGGT
65 CCGGCCGAAGAGGCAGAATGCGCAAGCTAGGGACT-GACCCGATCCC-CCCTGCGTGCTGCCGAT
* *
32565542 CCCGCTACCACAACCCTC-AGTCCGGCTAGG
128 CCCACTACCACAACCCTCGA-TCCGGCTAGA
** * *
32565572 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGTGTGCAGGCACT
1 GCTTAGAC-TGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACT
32565634 TAGCCGGTTG
Statistics
Matches: 179, Mismatches: 37, Indels: 9
0.80 0.16 0.04
Matches are distributed among these distances:
157 2 0.01
158 92 0.51
159 84 0.47
160 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.19
Consensus pattern (157 bp):
GCTTAGACTGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAAC
CGGCCGAAGAGGCAGAATGCGCAAGCTAGGGACTGACCCGATCCCCCCTGCGTGCTGCCGATCCC
ACTACCACAACCCTCGATCCGGCTAGA
Found at i:32566426 original size:26 final size:26
Alignment explanation
Indices: 32566385--32566437 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
32566375 CTGGTTCGAT
*
32566385 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
*
32566411 CTTAGACAGGGGATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
32566437 C
1 C
32566438 CTAAGTCGAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Found at i:32566743 original size:355 final size:343
Alignment explanation
Indices: 32566068--32566766 Score: 811
Period size: 355 Copynumber: 2.0 Consensus size: 343
32566058 CTGGTCTGAT
* * * * *
32566068 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCGTAAAATGAGTGTGTGGGCGCTGAGC
1 CTTAGACAGGGAATGAACTCCGTATGCCTAAGTCAACCCATAAAATGAGCGTATGGGCGCTCAGC
* *
32566133 CGGCCGAAGAGGCATAATGCGCAAGTCGAGGATCGACCCGATCACCCTCTTCGTGCTACCGGTCC
66 CGACCGAAGAGGCATAATGCGCAAGTCGAGGATCGACCCGATCACCCTCTTCGTGCTACCGATCC
* *
32566198 GACTGCCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTTCCTATGCCTCAGCCAA
131 GACTGCCACAACCCTCAATCCGACTGGGGCTTAGACATGCAATGAACTTCCTATGCCTCAGCCAA
* * *
32566263 CCCACGAAACGAGCGTGCGGGCGCTCAGCAGGCCGGAGAGGAAGAATGTACAAGTCAAGGATCGG
196 CCCACGAAACGAGCGTGCGGGCGCTCAGCAGGCCGAAGAGGAAGAATGCACAAGCCAAGGATCGG
*
32566328 CCCGGTCCCCCCTGCGTGCTACCGATCCTTCTACCGCAACCATCGATCTGGTTCGATCTTAGACT
261 CCCGGTCCCCCCTGCGTGCTACCGATCCTTCTACAGCAACCATCGATCTGGTTCGATCTTAGACT
32566393 GGGAATGAACTCCGTATG
326 GGGAATGAACTCCGTATG
* * * * *
32566411 CTTAGACAGGGGATGAACTCCGTATGCCTAAGTCGACCCATGAAATGAGCGTATGGTCGCTCAGT
1 CTTAGACAGGGAATGAACTCCGTATGCCTAAGTCAACCCATAAAATGAGCGTATGGGCGCTCAGC
* *
32566476 CGACCGGAGAGGCATAATGTGCAAGTCGAGGATC-AGCCCGATC-CCCTTCTGCATGCTGTCGAT
66 CGACCGAAGAGGCATAATGCGCAAGTCGAGGATCGA-CCCGATCACCC-TCT---T-C-GT-G--
* * *
32566539 CCTGTAGCCGATCCTACTGCCCCAAGCCTCAATCC-AGCTGGGGCTTAGACATGCAATGAAC-TC
121 -C--TA-CCGATCCGACTGCCACAACCCTCAATCCGA-CTGGGGCTTAGACATGCAATGAACTTC
* * * * * * * *
32566602 TGTATGCCT-ACGCCAACCCATGAAATGAGTGTGCGGGTGCTCAGCTGGTCGAAGAGGCAGAATG
181 -CTATGCCTCA-GCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCAGGCCGAAGAGGAAGAATG
* ** * ** *
32566666 CGCAAGCCGGGGATCGGCCCGGTCCCCCCTGTGTGCTGTCGAT-CTTGCTACAGCAACCCTC-AG
244 CACAAGCCAAGGATCGGCCCGGTCCCCCCTGCGTGCTACCGATCCTT-CTACAGCAACCATCGA-
*
32566729 TCTGGTGT-GATCTTAGACTGGGAATGAACTCTGTATG
307 TCTGGT-TCGATCTTAGACTGGGAATGAACTCCGTATG
32566766 C
1 C
32566767 CTAGGTCAAG
Statistics
Matches: 297, Mismatches: 39, Indels: 28
0.82 0.11 0.08
Matches are distributed among these distances:
342 4 0.01
343 96 0.32
346 1 0.00
347 1 0.00
348 2 0.01
349 1 0.00
352 1 0.00
354 10 0.03
355 180 0.61
356 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (343 bp):
CTTAGACAGGGAATGAACTCCGTATGCCTAAGTCAACCCATAAAATGAGCGTATGGGCGCTCAGC
CGACCGAAGAGGCATAATGCGCAAGTCGAGGATCGACCCGATCACCCTCTTCGTGCTACCGATCC
GACTGCCACAACCCTCAATCCGACTGGGGCTTAGACATGCAATGAACTTCCTATGCCTCAGCCAA
CCCACGAAACGAGCGTGCGGGCGCTCAGCAGGCCGAAGAGGAAGAATGCACAAGCCAAGGATCGG
CCCGGTCCCCCCTGCGTGCTACCGATCCTTCTACAGCAACCATCGATCTGGTTCGATCTTAGACT
GGGAATGAACTCCGTATG
Found at i:32567677 original size:159 final size:156
Alignment explanation
Indices: 32567222--32567689 Score: 471
Period size: 159 Copynumber: 2.9 Consensus size: 156
32567212 TACCAGTCCT
* *
32567222 ACTGCCACAACCCTCGGTCCGGTTGGGTCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
1 ACTGCCACAACCCTCGGTCCGGCTGGGTCTTAGACATGGAACGAACTCCGTATGCCTAAGCCAAC
* * * * *
32567287 CCGTGAAACGAGCGTGCGGGCACTCAGTCGACCGGAGAGGCAGAATGC-ATAAGCTGGGGATCGG
66 CCATGAAACGAGCGTGCGGGCACTCAG-CCAACAGAGAGGCAGAATGCGA-AAGCCGGGGATC-G
* *
32567351 CCCGATCCCTCCCTGCATGCTGTCAATCCT
128 CCCG-TCCCTCCCTGCATGCTGCCAATCCC
* * ** ** * * *
32567381 ACTACCGCAACCCTCGG-CCTGGTCT-AATCTTAGACCGGGAATC-AACTACGTATGCATAAGTC
1 ACTGCCACAACCCTCGGTCC-GG-CTGGGTCTTAGACATGGAA-CGAACTCCGTATGCCTAAGCC
* * * * *
32567443 AACCCATGAAACGAGCGTGTGGGCACTGAGCCAACCGAAGAGGCATAATGCGAAAGCCGAGGATC
63 AACCCATGAAACGAGCGTGCGGGCACTCAGCCAACAG-AGAGGCAGAATGCGAAAGCCGGGGATC
** *
32567508 GACCCGGTCCCTTTCTGCGTGCTGCCAATCCC
127 G-CCC-GTCCCTCCCTGCATGCTGCCAATCCC
* * * *
32567540 ATTGCCACAACCCTCGGTTCGGCTGGGGCTTAGACATGGAACGAACTCCCTATGCCTAAGCCAAC
1 ACTGCCACAACCCTCGGTCCGGCTGGGTCTTAGACATGGAACGAACTCCGTATGCCTAAGCCAAC
* *
32567605 CCATGAAACTG-GCGTGCGGGCGCTCAGCCAATCAGAGAGGCAGAATGCGCAAGCCGGGGATCAG
66 CCATGAAAC-GAGCGTGCGGGCACTCAGCCAA-CAGAGAGGCAGAATGCGAAAGCCGGGGATC-G
*
32567669 CCCTGTCCC-CCCTGCGTGCTG
128 CCC-GTCCCTCCCTGCATGCTG
32567690 TTGATCCTGT
Statistics
Matches: 248, Mismatches: 48, Indels: 27
0.77 0.15 0.08
Matches are distributed among these distances:
158 20 0.08
159 220 0.89
160 8 0.03
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.18
Consensus pattern (156 bp):
ACTGCCACAACCCTCGGTCCGGCTGGGTCTTAGACATGGAACGAACTCCGTATGCCTAAGCCAAC
CCATGAAACGAGCGTGCGGGCACTCAGCCAACAGAGAGGCAGAATGCGAAAGCCGGGGATCGCCC
GTCCCTCCCTGCATGCTGCCAATCCC
Found at i:32567776 original size:26 final size:26
Alignment explanation
Indices: 32567725--32567777 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
32567715 CTGATCCAAT
***
32567725 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
32567751 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
32567777 C
1 C
32567778 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:32568044 original size:170 final size:170
Alignment explanation
Indices: 32567751--32568117 Score: 439
Period size: 170 Copynumber: 2.2 Consensus size: 170
32567741 ACTTTGTATG
* * * * * *
32567751 CTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCACGAAACTAGCATGCGGGCGCTCAGC
1 CTTAGACAGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCACTCAGC
* * * * * * * *
32567816 CGGTCGGAGAGGCATAATGCGTAAGCCGAGGATCAGCCCGTTCCCCTCTACGTGCTGTCGATCCT
66 CGGCCGGAGACGCAGAATACGCAAGCCGAGGATCAGCCCGGTCCCCCCTACATGCTGTCGATCCT
* **
32567881 GCTACCGGTCCTGCTGCCACAACCCTCGGTCCGG-CTGGGT
131 GCTACCGGTCCTGCTGCCACAACCCTCAGTCCGGTCT-AAT
* * * *
32567921 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGT
1 CTTAGACAGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCACTCAGC
* * *
32567986 CGGCCGGAGACGCAGAATATGCAAGCCGGGGATCATCCCGGTCCCCCCTACATGCTGTCGATCCT
66 CGGCCGGAGACGCAGAATACGCAAGCCGAGGATCAGCCCGGTCCCCCCTACATGCTGTCGATCCT
* * * ** *
32568051 GGTGCTGGTCCTGCTGCCGTAACCTTCAGTCCGGTCTAAT
131 GCTACCGGTCCTGCTGCCACAACCCTCAGTCCGGTCTAAT
*
32568091 CTTAGACCGGGAATGAACTCCGTATGC
1 CTTAGACAGGGAATGAACTCCGTATGC
32568118 TTAGACATGG
Statistics
Matches: 164, Mismatches: 32, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
170 162 0.99
171 2 0.01
ACGTcount: A:0.21, C:0.31, G:0.27, T:0.20
Consensus pattern (170 bp):
CTTAGACAGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCACTCAGC
CGGCCGGAGACGCAGAATACGCAAGCCGAGGATCAGCCCGGTCCCCCCTACATGCTGTCGATCCT
GCTACCGGTCCTGCTGCCACAACCCTCAGTCCGGTCTAAT
Found at i:32568120 original size:26 final size:26
Alignment explanation
Indices: 32568091--32568143 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
32568081 CCGGTCTAAT
*
32568091 CTTAGACCGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
* * *
32568117 CTTAGACATGGAATGGACTCTGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
32568143 C
1 C
32568144 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Found at i:32568621 original size:26 final size:26
Alignment explanation
Indices: 32568592--32568644 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
32568582 CCGGTCTGAT
* *
32568592 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
32568618 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
32568644 C
1 C
32568645 CTAAGTCAAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:32568976 original size:26 final size:26
Alignment explanation
Indices: 32568947--32568999 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32568937 CCGATACGAT
32568947 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
32568973 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
32568999 C
1 C
32569000 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:32569082 original size:355 final size:355
Alignment explanation
Indices: 32568429--32569082 Score: 814
Period size: 355 Copynumber: 1.8 Consensus size: 355
32568419 TCGATCCGAC
** *
32568429 TGGGGCTCAGACATGGAATGAACTCCCTAAGCCTAAGCCAACCCACGAAACGGGCATACGGGCGC
1 TGGGGCTCAGACATGGAATGAACTCCCTAAGCCTAAGCCAAAACACGAAACGAGCATACGGGCGC
* * * * * * *
32568494 TCAGCCGACTGGAGAGGTAGAAGGCGCAAGCCGGGGATCGACCCAGTCCCCCCTGCGTGTTGCTG
66 TCAGCCAACCGAAGAGGTAGAAGGCACAAGCCAGGGATCGACCCAGTCCCCCCTGCGTGCTGCCG
* * * *
32568559 ATCCTACTGCCGCAACCTTCGATCCGGTCTGATCTTAGATTGGGAATGAACTCTGTATGCTTAGA
131 ATCCTACTGCCGCAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
* * * * **
32568624 CTGGGGATGAACTCCGTATGCCTAAGTCAAGCCATGAAATGAGCGTGTGGGCACTCAACCGATCG
196 CTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCACTCAACCGATCG
* * * * *
32568689 GAGAGGCATAATGCGTAAGCCCGGGATCAGCTCGGTCCCCCTCTGCATGCTGCTGATCTCGCTGT
261 AAGAGGCAGAATGCGCAAGCCCGGGATCAACCCGGTCCCCCTCTGCATGCTGCTGATCTCGCTGT
32568754 CGGTCCTGCTGCCATAACCCTCGGTCCAGT
326 CGGTCCTGCTGCCATAACCCTCGGTCCAGT
* * * * * * * *
32568784 TGGGGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAAAACATGAAATGAGCGTGCGGGCGC
1 TGGGGCTCAGACATGGAATGAACTCCCTAAGCCTAAGCCAAAACACGAAACGAGCATACGGGCGC
* * ** *
32568849 TCAGTCAACCGAAGAGGTAGAATGCACAAGCCAGGGATCGACCC-GATCCCCTTTGTGTGCTGCC
66 TCAGCCAACCGAAGAGGTAGAAGGCACAAGCCAGGGATCGACCCAG-TCCCCCCTGCGTGCTGCC
* * * *
32568913 GATCCTGCTGTCGTAACCCTCGGTCCGATAC-GATCTTAGACTGGGAATGAACTCCGTATGCTTA
130 GATCCTACTGCCGCAACCCTCGATCCGAT-CTGATCTTAGACTGGGAATGAACTCCGTATGCTTA
* * *
32568977 GACAT-GGAATGAACTTCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAGCCTG
194 GAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCACTCAACC-G
*
32569041 -TCGAAGAGGCAGAATGCGCAAG-CCGAGGATGAACCCGGTCCC
257 ATCGAAGAGGCAGAATGCGCAAGCCCG-GGATCAACCCGGTCCC
32569083 TTCCTGAGTG
Statistics
Matches: 248, Mismatches: 46, Indels: 10
0.82 0.15 0.03
Matches are distributed among these distances:
354 4 0.02
355 241 0.97
356 3 0.01
ACGTcount: A:0.24, C:0.28, G:0.28, T:0.20
Consensus pattern (355 bp):
TGGGGCTCAGACATGGAATGAACTCCCTAAGCCTAAGCCAAAACACGAAACGAGCATACGGGCGC
TCAGCCAACCGAAGAGGTAGAAGGCACAAGCCAGGGATCGACCCAGTCCCCCCTGCGTGCTGCCG
ATCCTACTGCCGCAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
CTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCACTCAACCGATCG
AAGAGGCAGAATGCGCAAGCCCGGGATCAACCCGGTCCCCCTCTGCATGCTGCTGATCTCGCTGT
CGGTCCTGCTGCCATAACCCTCGGTCCAGT
Found at i:32571499 original size:26 final size:26
Alignment explanation
Indices: 32571470--32571522 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
32571460 TCGGTCTGAT
32571470 CTTAGAC-TGGGAATGAAC-TCTGTATG
1 CTTAGACAT-GGAATGAACTTC-GTATG
32571496 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGACATGGAATGAACTTCGTATG
32571522 C
1 C
32571523 CTAAGTGAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTTCGTATG
Found at i:32572422 original size:21 final size:21
Alignment explanation
Indices: 32572393--32572437 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
32572383 GTTGACCCGA
*
32572393 TCCCTCTCTACATGCTGCTGG
1 TCCCCCTCTACATGCTGCTGG
* *
32572414 TCCCCCTCTGCGTGCTGCTGG
1 TCCCCCTCTACATGCTGCTGG
32572435 TCC
1 TCC
32572438 TGCTGCCACA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.04, C:0.42, G:0.22, T:0.31
Consensus pattern (21 bp):
TCCCCCTCTACATGCTGCTGG
Found at i:32572638 original size:26 final size:26
Alignment explanation
Indices: 32572602--32572654 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
32572592 CTGGTCCGAT
*
32572602 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
32572628 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
32572654 C
1 C
32572655 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:32573225 original size:159 final size:158
Alignment explanation
Indices: 32573029--32573602 Score: 540
Period size: 159 Copynumber: 3.5 Consensus size: 158
32573019 TCGGTCTGAT
* * * * *
32573029 CTTAGAC-TGGGAATGAGCTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGAGGGCACTGAG
1 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* *
32573093 CCGATCGGAGAGGCGTAATGCGCAAGCCGAGGATCAGCTTGGTCCCCCTCTGCATGCTACCGGTC
65 CCGA-CGGAGAGGCATAATGCGCAAGCCGAGGATCAGCTCGGTCCCCCTCTGCATGCTACCGGTC
* * * * *
32573158 CCACTACCATAACCCTCGATCTGACTGGGG
129 CCGCTGCCACAACCCTCGGTCCGACTGGGG
* *
32573188 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGG-AGCTCAG
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCA-CTCAG
* * * *
32573252 CCGACCGGATAGGCATAATGCGTAAGCCGAGGATCCGCTCGATCCCTTTCTGCATGCTGTCGATC
65 CCGA-CGGAGAGGCATAATGCGCAAGCCGAGGATCAGCTCGGTCCC---C--C-T-CTG-C-AT-
* * *
32573317 CCGCTGCCAGTCCTGCTGCCACAACCCTCGGTCCGACTGGGG
119 --GCTACCGGTCCCGCTGCCACAACCCTCGGTCCGACTGGGG
* * * * * * ** * *
32573359 CTTAGACATGGAATGATCTTCGTTTGCCTAAGCCAACCCATGAAACGAGCATGCGGGTGCTTAGT
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGC
* * * * * * * * *
32573424 TGACTGGAGGGGCATAATGCGCAAGCCGGGGATCAACCCAGTCCTCCTCTGCATGCTATCGGACC
66 CGAC-GGAGAGGCATAATGCGCAAGCCGAGGATCAGCTCGGTCCCCCTCTGCATGCTACCGGTCC
* *
32573489 CGCTGCCACAAACCTCGGTCCGACTAGGG
130 CGCTGCCACAACCCTCGGTCCGACTGGGG
* * * *
32573518 CTTAGACATGGAATGAACTCCCCATGCCTAAGCCAACCCATGAAACGGGCGTGTGGGCACTCAGC
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGC
* *
32573583 CAACTGGAGAGGCAGAATGC
66 CGAC-GGAGAGGCATAATGC
32573603 ATAAGTCGGG
Statistics
Matches: 332, Mismatches: 67, Indels: 32
0.77 0.16 0.07
Matches are distributed among these distances:
158 1 0.00
159 194 0.58
160 1 0.00
162 3 0.01
163 1 0.00
164 4 0.01
165 2 0.01
166 4 0.01
167 1 0.00
168 3 0.01
170 1 0.00
171 117 0.35
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGC
CGACGGAGAGGCATAATGCGCAAGCCGAGGATCAGCTCGGTCCCCCTCTGCATGCTACCGGTCCC
GCTGCCACAACCCTCGGTCCGACTGGGG
Found at i:32573704 original size:26 final size:26
Alignment explanation
Indices: 32573676--32573780 Score: 174
Period size: 26 Copynumber: 4.0 Consensus size: 26
32573666 CTGATCCGAT
* *
32573676 CTTAGATTGGGAATGAACTCCGTATT
1 CTTAGATTGGGGATGAACTCCGTATG
* *
32573702 CTTAGATTAGGGATGAACTCTGTATG
1 CTTAGATTGGGGATGAACTCCGTATG
32573728 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGATTGGGGATGAACTCCGTATG
32573754 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGATTGGGGATGAACTCCGTATG
32573780 C
1 C
32573781 CTAAGTCGAC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 73 1.00
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGATTGGGGATGAACTCCGTATG
Found at i:32574488 original size:26 final size:26
Alignment explanation
Indices: 32574450--32574502 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
32574440 GGCTCAAAAT
32574450 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
32574476 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
32574502 C
1 C
32574503 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:32574673 original size:106 final size:107
Alignment explanation
Indices: 32574487--32574686 Score: 253
Period size: 106 Copynumber: 1.9 Consensus size: 107
32574477 TTAGACATGG
* * * *
32574487 AATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGTCGACCGGAGAG
1 AATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGAGGGCGCTCAGCCGACCGAAGAG
** *
32574552 GCAGAATGTGCAAGCC-GAGGATCGGTCTGATCTTAGACTAAT
66 GCAGAATACGCAAGCCAG-GGATCGATCTGATCTTAGACTAAT
* * *
32574594 AATGAACTCTGTATGCCTAAG-CAACCCACGAAACGAGCGTGAGGGCGCTGAGCC-AGTCGAAGA
1 AATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGAGGGCGCTCAGCCGA-CCGAAGA
* *
32574657 GGCATAATACGTAAGCCAGGGATCGATCTG
65 GGCAGAATACGCAAGCCAGGGATCGATCTG
32574687 GTCCCCCTCT
Statistics
Matches: 79, Mismatches: 12, Indels: 5
0.82 0.12 0.05
Matches are distributed among these distances:
105 1 0.01
106 57 0.72
107 21 0.27
ACGTcount: A:0.29, C:0.24, G:0.29, T:0.17
Consensus pattern (107 bp):
AATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGAGGGCGCTCAGCCGACCGAAGAG
GCAGAATACGCAAGCCAGGGATCGATCTGATCTTAGACTAAT
Found at i:32574939 original size:26 final size:26
Alignment explanation
Indices: 32574898--32574950 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32574888 CCGATCCAAT
32574898 CTTAGACTGGGAATGAACGCCGTATG
1 CTTAGACTGGGAATGAACGCCGTATG
*
32574924 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACGCCGTATG
32574950 C
1 C
32574951 CTAAGTCGAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACGCCGTATG
Found at i:32575923 original size:672 final size:673
Alignment explanation
Indices: 32574577--32577110 Score: 2381
Period size: 672 Copynumber: 3.7 Consensus size: 673
32574567 CGAGGATCGG
** * *
32574577 TCTGATCTTAGACTAATAATGAACTCTGTATGCCTAAG-CAACCCACGAAACGAGCGTGAGGGCG
1 TCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
* ** * * * * * * *
32574641 CTGAGCCAGTCGAAGAGGCATAATACGTAAGCCAGGGATCGATCTGGTCCCCCTCTTCGTGCTGT
66 CTGAGCCAGCCGAAGAGGCATAATACACAAGTCGGGGATCGACCCGATCCCCCTCTGCGTGCTGC
* * * * *
32574706 CGATCCCGTTGCCACAACCCTCGGTCTGCCTGTGGCTTAGACATGGAATGAACTCCCTATGCCTC
131 CGGTCCCGCTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTA
* * * * * * * * *
32574771 AGCCAACCCATGAAATGGGCGTGCGGGAGCTC-AGCAGACCGGAGAGGTAGAATGCACAAGCTGA
196 AGCCAACCCACGAAACGGGCGTGCGGGCGCTCAATC-GGCCAGAGAGGCAGAATGCGCAAGCCGA
* * * * * * * * * * *
32574835 TGATTAGCCCGGTCCCCCATGCGTGATGTCAATCCTAC-A-CTGCAACCATCGATCCGATCCAAT
260 GGATCAACCCGGTCCCCCCTGCGTGCTGCCGATCCTGCTATC-GCAACCCTCGATCTGATCCGAT
* *
32574898 CTTAGACTGGGAATGAACGCCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCGACCC
324 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCC
* * *
32574963 ATGAAACGAGCGTGCGGGTGCTCAACCGATCGGAGAAGCCAATCGGAAAGGCATAATGCGTAAGC
389 ACGAAACGAGCGTGCGGGTGCTC-A--G-TC---GAA-CC-A---GAGAGGCATAATGCGCAAGC
* * * * * *
32575028 CGAGGATCAACCCGGTCCCCCTCTGCATGCTGTCGATCCCGCTGCCGGTCCTACTGCCCCAACCC
442 CGAGGATCAGCCCGGTCCCCCTCTGCGTGCTGTCAATCCCGCTGCTGGTCCTGCTGCCACAACCC
** * * * *
32575093 TTAGTCCGGTTGGGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACTAGC
507 TCGGTCCGGCTGGGTCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGC
* ** * *
32575158 GTGCGGGCGCTCAGTCGGTCGGAGAGGTAGAATGTGCAAGTCGAGGATTGG-CTCGGTCCCCCCT
572 GTGCGGGCACTCAGTCAATCGGAGAGGCAGAATGTGCAAGTCGGGGATTGGCCT-GGTCCCCCCT
* ***
32575222 GCGTGTTGTCGATCCTGCTGTAGCAACCCTCGGTCCGA
636 GCGTGTTGTCGATCTTGCTGCCTCAACCCTCGGTCCGA
* * ** *
32575260 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAGCCACGAAATAAGTGTGCGGGCG
1 TCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
* * *
32575325 TTGAGCCAGCCGAAGAGGCTTAATACACAAGTCGGGGATCGACCCAATCCCCCTCTGCGTGCTGC
66 CTGAGCCAGCCGAAGAGGCATAATACACAAGTCGGGGATCGACCCGATCCCCCTCTGCGTGCTGC
* * *
32575390 CGGTCCCACTGCCATAACCCTCGGTCTGGCTGGGGCTTAGACATGGAAGGAACTCCCTATGCCTA
131 CGGTCCCGCTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTA
* * * * *
32575455 AGCCAACCCATGAAACAGGCATGTGGGCGCTCAATCGGCCAGAGAGGCAGAATGCGCAAGCCGGG
196 AGCCAACCCACGAAACGGGCGTGCGGGCGCTCAATCGGCCAGAGAGGCAGAATGCGCAAGCCGAG
* * * * * * * *
32575520 GATCAACCTGGTCCCCCCTACATGCTGCCGATCCTGCTGTCGTAATCCTTC-ATCTGGTTCGATC
261 GATCAACCCGGTCCCCCCTGCGTGCTGCCGATCCTGCTATCGCAA-CCCTCGATCTGATCCGATC
* * *
32575584 TTAGACTGGGAATTAACTCCGTATGCTTGGA-TCAGGGATGAACTCTGTATGCCTAAGTCAACCC
325 TTAGACTGGGAATGAACTCCGTATGCTTAGACT-AGGGATGAACTCCGTATGCCTAAGTCAACCC
* ** * * *
32575648 ATGAAATAAGCGTGCAGGCGCTCAGTC-AACCAGAGAGGCATAATGCGTAAGCCGAGGATCAGCC
389 ACGAAACGAGCGTGCGGGTGCTCAGTCGAACCAGAGAGGCATAATGCGCAAGCCGAGGATCAGCC
* * * *
32575712 CAGTCCCCCTCTGCGTGCTATCAATCCCGCTGCTGGTCCTGCTACCACAACCCTCGGTCTGGCTG
454 CGGTCCCCCTCTGCGTGCTGTCAATCCCGCTGCTGGTCCTGCTGCCACAACCCTCGGTCCGGCTG
* *
32575777 GCTCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTC
519 GGTCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTC
* * * * *
32575842 AGTCAACCGGAGAGGCAGAATGCGCAAGTAGGGGATCGGCCTAGTCCCCCCTGCGTGTTGTCGAT
584 AGTCAATCGGAGAGGCAGAATGTGCAAGTCGGGGATTGGCCTGGTCCCCCCTGCGTGTTGTCGAT
* *
32575907 CTTGCTGCCTCAACCCTTGGTCTGA
649 CTTGCTGCCTCAACCCTCGGTCCGA
* * * * * *
32575932 TCTGATCTTAGACTAGGAATGAACTCTGTATGCATAATTCAACCCATGAAGCGAGCGTACGGGCG
1 TCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
* * ** ** * * * * *
32575997 CTGA-CCCGACTGAAGAGGCATAATACGTAAGTCGATGATTGGCTCGATCACCCTCTGCATGCTG
66 CTGAGCCAG-CCGAAGAGGCATAATACACAAGTCGGGGATCGACCCGATCCCCCTCTGCGTGCTG
* * * * *
32576061 TCGGTCCCGCTGCCATAACCCTTGGTCTGACTGGGGCTTAGACATGGAACGAACTCCCTATGCCT
130 CCGGTCCCGCTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCT
* * * * ** * * * * * *
32576126 AAGCCAAGCCACGAAATGGGCGTGCAGGCGCTTAGCCAGCCAAAGATGTAGAATGCGCAAGCTGG
195 AAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAATCGGCCAGAGAGGCAGAATGCGCAAGCCGA
* * ** * * * *
32576191 GGATTAGCTTGGTCCCTCCTGCGTGCTGCCGATCCTGCTACCGCAACCCTC-AGTCAGGTCCGAT
260 GGATCAACCCGGTCCCCCCTGCGTGCTGCCGATCCTGCTATCGCAACCCTCGA-TCTGATCCGAT
* ** * *
32576255 CTTAGATTGGGAATGAACTTTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTTAACCC
324 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCC
** * * *
32576320 ACGAAACGAGCGTGCGGGTGCTCAG-CTG-GTCGGAGAGGCATAATGCGCAAGCCGGGGATTAGC
389 ACGAAACGAGCGTGCGGGTGCTCAGTC-GAACCAGAGAGGCATAATGCGCAAGCCGAGGATCAGC
* * * * *
32576383 TCGATCCCCTTCTGGGTGCTGTCAATCCCACTGCTGGTCCTGCTGCCACAACCCTCGGTCCGGCT
453 CCGGTCCCCCTCTGCGTGCTGTCAATCCCGCTGCTGGTCCTGCTGCCACAACCCTCGGTCCGGCT
* * * *
32576448 GGGTCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGTGAGTGGGCACT
518 GGGTCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACT
* * * * * * * *
32576513 CAGCCAATCGGGGAGGCAGGATATGCAAGCCGGGGATTGGCCTGGTCCCCCCTACATGCTGTCGA
583 CAGTCAATCGGAGAGGCAGAATGTGCAAGTCGGGGATTGGCCTGGTCCCCCCTGCGTGTTGTCGA
32576578 TCCTATTGCTGGTCCTGCTACCACAACATTCGATCTAGTCCGATCTTAGACTGGGAA
648 T-C--TTGCT-G-CCT-C-A--AC--C---C--TC--G---G-TC-----C---G-A
* * * * *
32576635 TGAACTCCGTATGCTTAGAC-ATTGAATGAACTCCGTATGCCTAAGCCAAGCCATGAAACGAGTG
1 T---CT--G-AT-CTTAGACTA-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
* * * ** * * * **
32576699 TGCGGGCACTCAGCCGGTAGGAGAGGCATAATGCACAAG-CTGGGAATC-AGCCTTATCCCCCTC
58 TGCGGGCGCTGAGCCAGCCGAAGAGGCATAATACACAAGTC-GGGGATCGA-CCCGATCCCCCTC
** * * * * *
32576762 TATGTGCTGCCAGTCCCGTTGCCACAACCCTCGATTTGGCTGTGGCTTAGACATGGAATGAACTC
121 TGCGTGCTGCCGGTCCCGCTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTC
* *
32576827 CCTATG---AAGCCAACCCACGAAACGGGCGTGCGGGTGCTCAGT-GGCCCAGAGAGGCAGAATG
186 CCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAATCGG-CCAGAGAGGCAGAATG
* * * * *
32576888 CGCAAGTCGAGGATCAACCCGATCCCCCCTGTGTGCTACCGATCCTGCTATCGCAACCCTCGGTC
250 CGCAAGCCGAGGATCAACCCGGTCCCCCCTGCGTGCTGCCGATCCTGCTATCGCAACCCTCGATC
* *
32576953 TGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTA
315 TGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTA
* ** * * * * *
32577018 TGTCAATGCACGAAATGAGCTTGCGGGTGCGCAG-CCAATCAGAGAGGCATAATGCGCAAGCCGA
380 AGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGTCGAACCAGAGAGGCATAATGCGCAAGCCGA
* *
32577082 CGATCAGCCCGGTTCCCCTCTGCGTGCTG
445 GGATCAGCCCGGTCCCCCTCTGCGTGCTG
32577111 CCAAGAGGGA
Statistics
Matches: 1497, Mismatches: 297, Indels: 90
0.79 0.16 0.05
Matches are distributed among these distances:
671 9 0.01
672 742 0.50
673 4 0.00
675 6 0.00
676 3 0.00
677 5 0.00
678 1 0.00
679 1 0.00
681 4 0.00
682 1 0.00
683 35 0.02
684 208 0.14
685 90 0.06
686 6 0.00
688 1 0.00
690 1 0.00
693 1 0.00
694 2 0.00
702 1 0.00
703 2 0.00
706 3 0.00
707 227 0.15
708 1 0.00
709 4 0.00
710 136 0.09
711 3 0.00
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (673 bp):
TCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
CTGAGCCAGCCGAAGAGGCATAATACACAAGTCGGGGATCGACCCGATCCCCCTCTGCGTGCTGC
CGGTCCCGCTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTA
AGCCAACCCACGAAACGGGCGTGCGGGCGCTCAATCGGCCAGAGAGGCAGAATGCGCAAGCCGAG
GATCAACCCGGTCCCCCCTGCGTGCTGCCGATCCTGCTATCGCAACCCTCGATCTGATCCGATCT
TAGACTGGGAATGAACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCAC
GAAACGAGCGTGCGGGTGCTCAGTCGAACCAGAGAGGCATAATGCGCAAGCCGAGGATCAGCCCG
GTCCCCCTCTGCGTGCTGTCAATCCCGCTGCTGGTCCTGCTGCCACAACCCTCGGTCCGGCTGGG
TCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
TCAATCGGAGAGGCAGAATGTGCAAGTCGGGGATTGGCCTGGTCCCCCCTGCGTGTTGTCGATCT
TGCTGCCTCAACCCTCGGTCCGA
Found at i:32576305 original size:26 final size:26
Alignment explanation
Indices: 32576255--32576307 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
32576245 CAGGTCCGAT
* **
32576255 CTTAGATTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
32576281 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
32576307 C
1 C
32576308 CTAAGTTAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:32576651 original size:26 final size:26
Alignment explanation
Indices: 32576622--32576674 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32576612 CTAGTCCGAT
32576622 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
32576648 CTTAGACATTGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
32576674 C
1 C
32576675 CTAAGCCAAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:32576991 original size:26 final size:26
Alignment explanation
Indices: 32576962--32577014 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
32576952 CTGATCCGAT
32576962 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
32576988 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
32577014 C
1 C
32577015 CTATGTCAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:32578603 original size:26 final size:26
Alignment explanation
Indices: 32578574--32578651 Score: 111
Period size: 30 Copynumber: 2.8 Consensus size: 26
32578564 TTGATCCAAT
32578574 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
32578600 CTTAGACTGGGGATGAATGAACTCCATATG
1 CTTAGACT--GG--GAATGAACTCCATATG
*
32578630 CTTAGACTGGGGATGAACTCCA
1 CTTAGACTGGGAATGAACTCCA
32578652 AAGGGGGTGT
Statistics
Matches: 47, Mismatches: 1, Indels: 8
0.84 0.02 0.14
Matches are distributed among these distances:
26 19 0.40
28 4 0.09
30 24 0.51
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:32578618 original size:30 final size:30
Alignment explanation
Indices: 32578584--32578646 Score: 126
Period size: 30 Copynumber: 2.1 Consensus size: 30
32578574 CTTAGACTGG
32578584 GAATGAACTCCATATGCTTAGACTGGGGAT
1 GAATGAACTCCATATGCTTAGACTGGGGAT
32578614 GAATGAACTCCATATGCTTAGACTGGGGAT
1 GAATGAACTCCATATGCTTAGACTGGGGAT
32578644 GAA
1 GAA
32578647 CTCCAAAGGG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.32, C:0.16, G:0.27, T:0.25
Consensus pattern (30 bp):
GAATGAACTCCATATGCTTAGACTGGGGAT
Found at i:32579423 original size:26 final size:26
Alignment explanation
Indices: 32579394--32579446 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
32579384 CCAATCTGAT
*
32579394 CTTAGATTGGGAATGAACTCCATATG
1 CTTAAATTGGGAATGAACTCCATATG
*
32579420 CTTAAATTGGGGATGAACTCCATATG
1 CTTAAATTGGGAATGAACTCCATATG
32579446 C
1 C
32579447 CTATGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAAATTGGGAATGAACTCCATATG
Found at i:32580094 original size:158 final size:157
Alignment explanation
Indices: 32579604--32580104 Score: 522
Period size: 158 Copynumber: 3.2 Consensus size: 157
32579594 TTGACTGGGG
* * * *
32579604 CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGAGTGCTCAAC
1 CTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGTGCTCAGC
* * * * * * * *
32579669 TGACCGAAGAGGTAGAATGCGCAAGTCGAGGATCGGCCCGATCCCCCCTGTGTGCTATCGATCCT
65 CGGCTGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGTGTGCTACCGATCCT
* *
32579734 GCTACCGTAACCCTCGGTCTGGTCAGAT
130 GCTGCCATAACCCTCGGTCTGGTCAGAT
* * * * *
32579762 CTTAGACTAGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCAGGTGTTGAGC
1 CTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGTGCTCAGC
* * * * *
32579827 CAG-TCGGAGAGGCATAATGCGCAAGCCGGGGATCGGCCTGGTCCCCCTCTGTGTCCTACCGATC
65 CGGCT-GGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCC-CTGTGTGCTACCGATC
* * * * * * **
32579891 CCGCTGCCATAACCCTTGATC-CGACTGGGG
128 CTGCTGCCATAACCCTCGGTCTGGTC-AGAT
* * * *
32579921 CTTAG-CATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAGC
1 CTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGTGCTCAGC
* * *
32579985 CGGCTGGAGAGGTAGAATGCGCAAGCCGGGGATTGGCCCGGTCCCCCCTGCGTGCTACCGATCAT
65 CGGCTGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGTGTGCTACCGATCCT
* * *
32580050 GCTGGCAAAACCCTCGGTCTGGTCCGAT
130 GCTGCCATAACCCTCGGTCTGGTCAGAT
* *
32580078 CTTAGACTGGGGATGAACTCCATATGC
1 CTTAGACT-GGAATGAACTCCGTATGC
32580105 TTAGACTGGG
Statistics
Matches: 273, Mismatches: 61, Indels: 18
0.78 0.17 0.05
Matches are distributed among these distances:
157 37 0.14
158 198 0.73
159 38 0.14
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (157 bp):
CTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGTGCTCAGCC
GGCTGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGTGTGCTACCGATCCTG
CTGCCATAACCCTCGGTCTGGTCAGAT
Found at i:32580423 original size:343 final size:340
Alignment explanation
Indices: 32579762--32580888 Score: 1346
Period size: 343 Copynumber: 3.3 Consensus size: 340
32579752 CTGGTCAGAT
* * * * * *
32579762 CTTAGACTAGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCAGGTGTTGAGC
1 CTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGC
* * ** *
32579827 CAGTCGGAGAGGCATAATGCGCAAGCCGGGGATCGGCCTGGTCCCCCTCTGTGTCCTACCGATCC
66 C-GTCGGAGAGGCATAATGCGCAAGCCGGGGATCAGCCTGGTCCCCCTCTGCGTGATGCCGATCC
* * *
32579892 CGCTGCCATAACCCTTGATCCGACTGGGGCTTAG-CATGGAATGAACTCCCTATGCCTAAGCCAA
130 CGCTGCCATAACCCTAGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
* * *
32579956 CCCATGAAACGGGCGTGCGGGCGCTCAGCCGG-CTGGAGAGGTAGAATGCGCAAGCCGGGGATTG
195 CCCATGAAACGGGCGTGCGGGCACTCAGCCGGTC-GGAGAGGAAGAATGCGCAAGCCGGGGATCG
* ** ** *
32580020 GCCCGGTCCCCCCTGCGTGCTACCGATCATGCTGGCAAAACCCTCGGTCTGGTCCGATCTTAGAC
259 GCCC-GT-CCCCCTGCGTGCTACCGATCCTGCTACCGCAACCCTCAGTCTGGTCCGATCTTAGAC
* *
32580085 TGGGGATGAACTCCATATG
322 TGGGAATGAACTCCGTATG
* * * * ** *
32580104 CTTAGACTGGGGATGAACTCCGTATACCTAAGTCAACCCATAAAACGAGTGTGCGGGCACTCAAC
1 CTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGC
*
32580169 CGGTCGGAGAGGCATAATGCGCAAGTCGGGGATCAGCCTGGTCCCCCTCTGCGTGATGCCGATCC
66 C-GTCGGAGAGGCATAATGCGCAAGCCGGGGATCAGCCTGGTCCCCCTCTGCGTGATGCCGATCC
* * * **
32580234 CGCTGTCATAACCCTAGGTCTGGCTAGCACTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
130 CGCTGCCATAACCCTAGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
* ** ** *
32580299 CCCACGAAACAAGCGTGCGGGCACTCAGCCGGTCAAAGAGGAAGAATGTGCAAGCCGGGGATCGG
195 CCCATGAAACGGGCGTGCGGGCACTCAGCCGGTCGGAGAGGAAGAATGCGCAAGCCGGGGATCGG
**
32580364 CCCAGTCCCTCCTGCGTGCTACCGATCCTGCTACCGCAACCCTTTGTCTGGTCCGATCTTAGACT
260 CCC-GTCCC-CCTGCGTGCTACCGATCCTGCTACCGCAACCCTCAGTCTGGTCCGATCTTAGACT
32580429 GGGAATGAACTCCGTATG
323 GGGAATGAACTCCGTATG
* * *
32580447 CTTAGACTAGGGATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGTGCTCAGC
1 CTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGC
* * * * * * * ** *
32580512 CGACTGGAGAGGCAGAATGCGCAAGCCAGGGATCA-ACTCGATCTCCCTGTGCCCGTTGCCGATC
66 CGTC-GGAGAGGCATAATGCGCAAGCCGGGGATCAGCCT-GGTCCCCCTCTGCGTGATGCCGATC
* * * *
32580576 TCGCTGCCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
129 CCGCTGCCATAACCCTAGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
* * * *
32580641 ACCCATGAAACGGGCATGCGGGCACTCAACCGGTCGGAGAGAAAGAATGCGTAAGCCGGGGATCG
194 ACCCATGAAACGGGCGTGCGGGCACTCAGCCGGTCGGAGAGGAAGAATGCGCAAGCCGGGGATCG
* ** ** *
32580706 ACCCGATCCCCCTTGCGTGCTGTCGATCCTGC-AGCCGCAACCCTCAGTCTAATCTGATCTTAGA
259 GCCCG-TCCCCC-TGCGTGCTACCGATCCTGCTA-CCGCAACCCTCAGTCTGGTCCGATCTTAGA
32580770 CTGGGAATGAACTCCGTATG
321 CTGGGAATGAACTCCGTATG
* * * * *
32580790 CTTAGACT-GGTGATGAACTCCGTATGCCTAAGTCAACCTAAGAAACAAGCGTGTGGATGCTCAG
1 CTTAGACTAGG-GATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAG
* * * * *
32580854 CCGACCGAAGAGGCAGAATGCGTAAGTCGGGGATC
65 CCG-TCGGAGAGGCATAATGCGCAAGCCGGGGATC
32580889 GACTCGATCT
Statistics
Matches: 668, Mismatches: 107, Indels: 19
0.84 0.13 0.02
Matches are distributed among these distances:
342 149 0.22
343 517 0.77
344 2 0.00
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.20
Consensus pattern (340 bp):
CTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGC
CGTCGGAGAGGCATAATGCGCAAGCCGGGGATCAGCCTGGTCCCCCTCTGCGTGATGCCGATCCC
GCTGCCATAACCCTAGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
CCATGAAACGGGCGTGCGGGCACTCAGCCGGTCGGAGAGGAAGAATGCGCAAGCCGGGGATCGGC
CCGTCCCCCTGCGTGCTACCGATCCTGCTACCGCAACCCTCAGTCTGGTCCGATCTTAGACTGGG
AATGAACTCCGTATG
Found at i:32580450 original size:26 final size:26
Alignment explanation
Indices: 32580421--32580473 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32580411 CTGGTCCGAT
32580421 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
*
32580447 CTTAGACTAGGGATGAACTTCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
32580473 C
1 C
32580474 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:32580805 original size:26 final size:26
Alignment explanation
Indices: 32580764--32580816 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
32580754 CTAATCTGAT
32580764 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
32580790 CTTAGACTGGTG-ATGAACTCCGTATG
1 CTTAGACTGG-GAATGAACTCCGTATG
32580816 C
1 C
32580817 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:32580998 original size:26 final size:26
Alignment explanation
Indices: 32580960--32581012 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
32580950 TCAATCTGAT
32580960 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
32580986 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
32581012 C
1 C
32581013 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:32581342 original size:159 final size:159
Alignment explanation
Indices: 32580983--32581487 Score: 425
Period size: 158 Copynumber: 3.2 Consensus size: 159
32580973 TGAACTCCGT
* * * *
32580983 ATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGGGTGCGGGCACTC
1 ATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTA
* * * * *
32581048 AGCAGGTCGGAGCGACAAAATGCACAAGCCAGGGATCGGCCTGATCCCCCCTGCGTGCTGTCGAT
66 AACAGGTCGGAGAGACAAAATGCACAAGCCAGGGATCGACCCGATCCCCCCTGCGTGCCGTCGAT
*** * *
32581113 CCTGTTGTCGTAACCCTCGGTCTGATCTG
131 CCCACTGCCGTAACCCTCGGTCCGATCTG
* * *
32581142 AT-CTGAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTTCGGGCACT
1 ATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACT
* * * ***
32581205 GAAAC-GGTCGGAGAGGCATAATGCGCAAGTTGGGGATCGACCCGATCCCCCTCTGCGTGCCGTC
65 -AAACAGGTCGGAGAGACAAAATGCACAAGCCAGGGATCGACCCGATCCCCC-CTGCGTGCCGTC
* *
32581269 GGTCCCACTGCCAG-AACCTTCGGTCCGA-CT-
128 GATCCCACTGCC-GTAACCCTCGGTCCGATCTG
* * * *
32581299 AGTGCTTAGACATTGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGTGTGCGGGCACT
1 A-TGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACT
* * * ** ** * * * * * * * *
32581364 CAGCCGACCAAAGAGGCAGAATGCGCAAGCC-GAGGATCGGCCCGGTCCCCCCTGTGTGCTGTCA
65 AAACAGGTCGGAGAGACAAAATGCACAAGCCAG-GGATCGACCCGATCCCCCCTGCGTGCCGTCG
** ** *
32581428 ATCCTTCTATCGTAACCCTCGGTCCGGTCTG
129 ATCCCACTGCCGTAACCCTCGGTCCGATCTG
* *
32581459 AT-CTCAGAC-TGGGAATGAACTCCATATGC
1 ATGCTTAGACAT-GGAATGAACTCCGTATGC
32581488 TTAGACTGGG
Statistics
Matches: 277, Mismatches: 56, Indels: 27
0.77 0.16 0.08
Matches are distributed among these distances:
157 4 0.01
158 146 0.53
159 124 0.45
160 3 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (159 bp):
ATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTA
AACAGGTCGGAGAGACAAAATGCACAAGCCAGGGATCGACCCGATCCCCCCTGCGTGCCGTCGAT
CCCACTGCCGTAACCCTCGGTCCGATCTG
Found at i:32581512 original size:26 final size:26
Alignment explanation
Indices: 32581464--32581513 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
32581454 GTCTGATCTC
* *
32581464 AGACTGGGAATGAACTCCATATGCTT
1 AGACTGGGAATAAACTACATATGCTT
* *
32581490 AGACTGGGGATAAACTACGTATGC
1 AGACTGGGAATAAACTACATATGC
32581514 CTAAGTCAAC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.32, C:0.18, G:0.26, T:0.24
Consensus pattern (26 bp):
AGACTGGGAATAAACTACATATGCTT
Done.