Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 356 of 402
Found at i:32582117 original size:158 final size:157
Alignment explanation
Indices: 32581867--32582358 Score: 399
Period size: 158 Copynumber: 3.1 Consensus size: 157
32581857 CATAGACATA
* * * * * * * *
32581867 GAATAAACTCCGTATGCCTAATCCAACCCATGAAACGAACGTGTGGGCGTTCAGCC-AACTGAGG
1 GAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGGACGTGCGAGCGCTCAGCCGATCGGA-G
* * ** **
32581931 AGGCAGAATGAGCA-AA-CCGGGGGCCGACCCGGTCCCTCCTATATGCTATCGATCCTGCTTCCG
65 AGACAGAA--AGCACAAGCCGAGGATCGACCCGGTCCCTCCTACGTGCTATCGATCCT-CTTCCG
* * *
32581994 TGACCCTCAGTCCGATCCGATCTTAGACTGG
127 TAACCCTCGGTCCGATCAGATCTTAGACTGG
* ** *
32582025 GAATGAACTCTGTATGCCTAAGTTAACCCATGAAAC-GAGCGTGCGAGCGCTGAGCCGATCGGAG
1 GAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGGA-CGTGCGAGCGCTCAGCCGATCGGAG
* * * ** * *
32582089 AGGCATAAAGCATAAGCCGAGGATCGACCCAATCCCCTTCTACGTGCT-GCTGAT-CTCATTGCC
65 AGACAGAAAGCACAAGCCGAGGATCGACCCGGT-CCCTCCTACGTGCTATC-GATCCTC-TT-CC
* **
32582152 -TCAACCCTCGGTCTGA-CTAGGGCTTAGACAT-G
126 GT-AACCCTCGGTCCGATC-AGATCTTAGAC-TGG
* * *
32582184 GAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGACGTGCGGGTGCTCAGCCGATCGGAGA
1 GAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGGACGTGCGAGCGCTCAGCCGATCGGAGA
* * * * * * * *
32582249 GACAGAATGCGCAAGTCGGGGATCGACCCGGTCCCCCCTGCGTGCTATCGATCTTACTACCGTAA
66 GACAGAAAGCACAAGCCGAGGATCGACCCGGTCCCTCCTACGTGCTATCGATCCT-CTTCCGTAA
* * *
32582314 CCCTCGGTCCGGTCTGATCTTCGACTGG
130 CCCTCGGTCCGATCAGATCTTAGACTGG
32582342 GAATGAACTCCGTATGC
1 GAATGAACTCCGTATGC
32582359 TTAGACAGGG
Statistics
Matches: 259, Mismatches: 57, Indels: 36
0.74 0.16 0.10
Matches are distributed among these distances:
156 4 0.02
157 5 0.02
158 123 0.47
159 123 0.47
160 4 0.02
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.21
Consensus pattern (157 bp):
GAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGGACGTGCGAGCGCTCAGCCGATCGGAGA
GACAGAAAGCACAAGCCGAGGATCGACCCGGTCCCTCCTACGTGCTATCGATCCTCTTCCGTAAC
CCTCGGTCCGATCAGATCTTAGACTGG
Found at i:32582727 original size:26 final size:26
Alignment explanation
Indices: 32582691--32582743 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
32582681 TCGGTCTGAT
32582691 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
32582717 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
32582743 C
1 C
32582744 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:32583273 original size:159 final size:159
Alignment explanation
Indices: 32582873--32583282 Score: 461
Period size: 158 Copynumber: 2.6 Consensus size: 159
32582863 TGCTGGTCCT
* * * *
32582873 GCTACCACAACCCTCAATCTGGCTAAGGCTTAGACATGGAATGAACTCCGTATGCTTAAGCCAAC
1 GCTACCACAACCCTCAGTCTGGCTTAGGCTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAAC
* * * *
32582938 CCACGAAATGAG-CATGCAGGCACTCAGTTGACTGAAGAGGCAGAATGCGCAAGTAGAGGATCGG
66 CCACGAAATGAGTCATGCGGGCGCTCAGCTGACCGAAGAGGCAGAATGCGCAAGTAGAGGATCGG
* *
32583002 CCCGATCCCCCCTGCGTGCTATCAATCCT
131 CCCGATCCCCCCTACGTGCTATCAATCCC
* ** ** * * * *
32583031 GCTACCGCAACCCTTTGTCTGG-TCTAATCTTAGACTGGGAATGAACTTCGTATCCCTAAGTCAA
1 GCTACCACAACCCTCAGTCTGGCT-TAGGCTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * *
32583095 CCCACGAAACGAGT-GTGCGGGCGCTGAGCTGGCCGGAGAGGCATAATGCGCAAGTCAG-GGATT
65 CCCACGAAATGAGTCATGCGGGCGCTCAGCTGACCGAAGAGGCAGAATGCGCAAGT-AGAGGATC
* *
32583158 GGCCCGATCCCCCTCTACGTGCTGTCGATCCC
129 GGCCCGATCCCCC-CTACGTGCTATCAATCCC
* * *
32583190 GCTACCACAACCCTCGGTCTGGCTTCGGCTTAGACTTGGAATGAACTCCCTATGCCTAAGCCAAC
1 GCTACCACAACCCTCAGTCTGGCTTAGGCTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAAC
* *
32583255 CCATGAAATG-GTCATGCGGGCGCCCAGC
66 CCACGAAATGAGTCATGCGGGCGCTCAGC
32583283 CGGTCAGAGA
Statistics
Matches: 202, Mismatches: 44, Indels: 11
0.79 0.17 0.04
Matches are distributed among these distances:
157 1 0.00
158 112 0.55
159 88 0.44
160 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.25, T:0.20
Consensus pattern (159 bp):
GCTACCACAACCCTCAGTCTGGCTTAGGCTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAAC
CCACGAAATGAGTCATGCGGGCGCTCAGCTGACCGAAGAGGCAGAATGCGCAAGTAGAGGATCGG
CCCGATCCCCCCTACGTGCTATCAATCCC
Found at i:32584141 original size:26 final size:26
Alignment explanation
Indices: 32584103--32584155 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32584093 TGCTCAAACT
*
32584103 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
32584129 CTTAGACAT-GGAATAAACTCCGTATG
1 CTTAGAC-TGGGAATAAACTCCGTATG
32584155 C
1 C
32584156 CTAAGCTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:32584834 original size:159 final size:158
Alignment explanation
Indices: 32584488--32584851 Score: 385
Period size: 159 Copynumber: 2.3 Consensus size: 158
32584478 CTGGGGATTT
* * ** *
32584488 ACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCAGGCGCTCAGCCGGCCGAAAAGGTAGA
1 ACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAACCGAAAAGGCAGA
* * *
32584553 ATGCGTAAGTCGGGGATCGGCCCGGTCCCCCCTACGTGCTGTCGATCTTGCTACCACAACCCTCG
66 ATGCGTAAGCCGGGGATCGGCCCGGTCCCCCCTACATGCTGTCGATCCTGCTACCACAACCCTCG
* *
32584618 GTCCAGTCTGAACTCAGACTGGGAATGA
131 CTCCAGACTGAACTCAGACTGGGAATGA
* * * * * * *
32584646 ACTCTGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGTGCTGAGCTAACCGAAGAGGCATA
1 ACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAACCGAAAAGGCAGA
* * * *
32584711 ATGC-TCAAGCCGGGGATTGGCTCGGTCTCCCTCTACATGCTGTCAGA-CCTGCTGCCACAACCC
66 ATGCGT-AAGCCGGGGATCGGCCCGGTC-CCCCCTACATGCTGTC-GATCCTGCTACCACAACCC
** *
32584774 TCGCTCC-GACTGGGGCTTAGACAT-GGAATGA
128 TCGCTCCAGACT-GAACTCAGAC-TGGGAATGA
* * * * * *
32584805 ACTCCCTATGCCTAAGCCAACCCATGAAACGGGTGTGCGGGCACTCA
1 ACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
32584852 ACCGGTTGAA
Statistics
Matches: 167, Mismatches: 34, Indels: 9
0.80 0.16 0.04
Matches are distributed among these distances:
157 1 0.01
158 78 0.47
159 85 0.51
160 3 0.02
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (158 bp):
ACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAACCGAAAAGGCAGA
ATGCGTAAGCCGGGGATCGGCCCGGTCCCCCCTACATGCTGTCGATCCTGCTACCACAACCCTCG
CTCCAGACTGAACTCAGACTGGGAATGA
Found at i:32584899 original size:26 final size:26
Alignment explanation
Indices: 32584870--32584930 Score: 70
Period size: 26 Copynumber: 2.3 Consensus size: 26
32584860 AAGAGGTAGA
32584870 ATGCGTAAGAC-AGGAATGAACTCCGT
1 ATGC-TAAGACTAGGAATGAACTCCGT
* * *
32584896 ATGCTTAGACTGGGGATGAACTCCGT
1 ATGCTAAGACTAGGAATGAACTCCGT
32584922 ATGCCTAAG
1 ATG-CTAAG
32584931 TCAACCCACG
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
25 5 0.17
26 20 0.69
27 4 0.14
ACGTcount: A:0.30, C:0.20, G:0.28, T:0.23
Consensus pattern (26 bp):
ATGCTAAGACTAGGAATGAACTCCGT
Found at i:32584905 original size:25 final size:26
Alignment explanation
Indices: 32584877--32584925 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
32584867 AGAATGCGTA
32584877 AGAC-AGGAATGAACTCCGTATGCTT
1 AGACTAGGAATGAACTCCGTATGCTT
* *
32584902 AGACTGGGGATGAACTCCGTATGC
1 AGACTAGGAATGAACTCCGTATGC
32584926 CTAAGTCAAC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 4 0.19
26 17 0.81
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.22
Consensus pattern (26 bp):
AGACTAGGAATGAACTCCGTATGCTT
Found at i:32585282 original size:26 final size:26
Alignment explanation
Indices: 32585253--32585305 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32585243 CCGATCTGAT
*
32585253 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCATATG
32585279 CTTAGACATGGAATGAACTCCATATG
1 CTTAGACATGGAATGAACTCCATATG
32585305 C
1 C
32585306 CTAAGCCAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:32585753 original size:26 final size:26
Alignment explanation
Indices: 32585704--32585754 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
32585694 GATCCAAATA
**
32585704 TAGACTGGGAATGAACTTTATATGCT
1 TAGACTGGGAATGAACTCCATATGCT
* *
32585730 TAGACTGGGGATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCATATGC
32585755 CTAAGTCAAC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.29
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCATATGCT
Found at i:32585886 original size:24 final size:24
Alignment explanation
Indices: 32585854--32585901 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
32585844 CGTGCTATCG
32585854 ATCCCACTACCAATCCTACTGCCA
1 ATCCCACTACCAATCCTACTGCCA
* *
32585878 ATCCCACTACCAGTCCTGCTGCCA
1 ATCCCACTACCAATCCTACTGCCA
32585902 CAACCCTTGA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.25, C:0.46, G:0.08, T:0.21
Consensus pattern (24 bp):
ATCCCACTACCAATCCTACTGCCA
Found at i:32586123 original size:26 final size:26
Alignment explanation
Indices: 32586094--32586146 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
32586084 CCGATCCGAT
*
32586094 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATAAACTCCGTATG
*
32586120 CTTAGACATGGAATAAACTTCGTATG
1 CTTAGACATGGAATAAACTCCGTATG
32586146 C
1 C
32586147 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATAAACTCCGTATG
Found at i:32586626 original size:26 final size:26
Alignment explanation
Indices: 32586585--32586637 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32586575 CCGATTTGAT
32586585 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
*
32586611 CTTAGACTGAGG-ATGAACTCCGTATG
1 CTTAGACT-AGGAATGAACTCCATATG
32586637 C
1 C
32586638 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:32587345 original size:880 final size:871
Alignment explanation
Indices: 32585882--32587764 Score: 2206
Period size: 880 Copynumber: 2.1 Consensus size: 871
32585872 CTGCCAATCC
* * *
32585882 CACTACCAGTCCTGCTGCCACAACCCTTGATCCGACTGGGGCTTAGACATGG-ATAGAACTCTAT
1 CACTACCAGTCCTGCTGCCACAACCCTCGATTCGACTGGGGCTTAGACATGGAAT-GAACTC-GT
* * * *
32585946 ATGCCTAAGCCAACCCACGAAACGAGCATGCAGGCGATTAGCTGGCCGGAGAGGCAGAATGCGCA
64 ATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCGATAAGCTGGCCGAAGAGGCAGAATGCGCA
* * * * * * * * *
32586011 AGTCGAGGACCGACCCGATCCCCCTCTGCTTGCTGCCGATCCTGATGCTGGCCCTGCTACCGTAA
129 AGCCAAGGACCGACCCGATCCCCCCCTACGTGCTACCGATCCTGATGCTGGCACTGCTACAGCAA
* * *
32586076 CCCTCAGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATAAACTTC
194 CCCTCAGTCCGATCCGATCTAAGACTGGGAATGAACTCCGTATGCTTAGACATGAAATAAACTCC
* * * * *
32586141 GTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGACGCTCAGTCGGTCGGAGAGGCAGAATGCA
259 GTATGCCTAAGCCAACCCACAAAACGAGCATGCGGACGCTCAGCCGGTCGAAAAGGCAGAATGCA
* * * * *
32586206 CAAGTCGAGGATCGGCCCTGCGTGCTATCATCCTGCTGCCGTAACACTCGGTCCAGTATGATCTT
324 CAAGCCGAGGATCGCCCCTACGTGCTATCATCCTGCTACCGTAACACTCGATCCAGTATGATCTT
*
32586271 ACACAAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTGAGCCGA
389 ACACAAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAAGAGCGTGCGGGCACTGAGCCGA
* * * *
32586336 TCGAAGAGGCATAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTCTACGTGCTGTTGATCCCAC
454 CCGAAGAGGCATAATGCGCAAGCCGGGGATAGACCCGGTCCCCCTCTACGTACTGTAGATCCCAC
* * * *
32586401 TACCACAACCCTCGGTGCAGCTGGGGCTTAGACATGAAATGAACTCCCTATGCTTCAGCCAACCC
519 TACCACAACCCTCGGTCCAGCTGGGGCTTAGACATGAAATGAACTCCCTATGCCTAAACCAACCC
* * * * *
32586466 ACGAAA-CGGGCATGCGGGTGCTCAACCGATCGGAGAGGCAAAATGCGGAAGCTGGGGATC-AGC
584 ACGAAATCGGG-ATACGGGTGCTCAACCGATCGAAAAGGCAAAATGCGCAAGCCGGGGATCGA-C
* * * * * **
32586529 CCGGTCCCTCATGTGTGCTGTCGATCCTCCTGCCGCAACCCTCGGTCCGATTTGATCTTAGACTA
647 CCAGTCCCCCATGCGTACTGTCGATCCTCCTGCCGCAACCCTCAGTCCGATCCGATCTTAGACTA
* *
32586594 GGAATGAACTCCATATGCTTAGACTGAGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
712 GGAATGAACTCCATATGCTTAGACAGAGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAA
* * * * * * * *
32586659 GCGTGCGAGCACTCAGCCAGTCGGAGAGGCCGGTCGGAGAGGCGTAATACGTAAG-CTGGGGATC
777 GCGTACGAGCACTCAACCAGTCAGAGAGGCCGATCGAAGAGGCATAATACGCAAGTC-AGGGATC
* * *
32586723 AGCTCGGTCTCCCTCTGTATGCTGTCGATCT
841 AGCCCGGTCCCCCTCTGCATGCTGTCGATCT
* * *
32586754 CGCTACC-GATCCTACTGCCATAACCCTCGATTCGACTGGGGCTTAGACATGGAATGAACTCGTA
1 CACTACCAG-TCCTGCTGCCACAACCCTCGATTCGACTGGGGCTTAGACATGGAATGAACTCGTA
* * * * * * *
32586818 TGCCTAAGCCAACCCACGAAACAAGCGTACGGGCGCTCAATC-GGCTGAAGAGGTAGAATGCGTA
65 TGCCTAAGCCAACCCACGAAACGAGCGTACAGGCGAT-AAGCTGGCCGAAGAGGCAGAATGCGCA
* * * * * *
32586882 AGCCAAGGATCGACCCGATCCCCCCCTACGTGCTACCGAT-CTTACTGTTGGTATTGCTGCAGCA
129 AGCCAAGGACCGACCCGATCCCCCCCTACGTGCTACCGATCCTGA-TGCTGGCACTGCTACAGCA
* * *
32586946 ACCCTCGGTCCGATCTGATCTAAGACTGGGAATGAACTCCGTATGCTTAGACATGAAATGAACTC
193 ACCCTCAGTCCGATCCGATCTAAGACTGGGAATGAACTCCGTATGCTTAGACATGAAATAAACTC
* *
32587011 CGTATGCCTAAGCCAACCCACAAAATGAGCATGC-GAGCGCTCAGCCGTTCGAAAAGGCAGAATG
258 CGTATGCCTAAGCCAACCCACAAAACGAGCATGCGGA-CGCTCAGCCGGTCGAAAAGGCAGAATG
** * * * *
32587075 TGCAAGCCGGGGATTGGCCCGATCCCCTTACGTGCTGTCGATCCTGCTACCGTAACCCTCGATCT
322 CACAAGCCGAGGA-T----CG--CCCC-TACGTGCTATC-ATCCTGCTACCGTAACACTCGATCC
* * * * * * *
32587140 GGTCTGATCTTAGACGAGGAATGAACTCTGTATGCCTATGTCAACCCATGAAAAGAGCGTGCGGG
378 AGTATGATCTTACACAAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAAGAGCGTGCGGG
** * * ** * *
32587205 CGGTGAGTCGACCGGAGAGGCATAATGCGCAAGTTGGGGATTAG-CCCGGTCCCCCTTTGCGTAC
443 CACTGAGCCGACCGAAGAGGCATAATGCGCAAGCCGGGGA-TAGACCCGGTCCCCCTCTACGTAC
* ** * * *
32587269 TGTAGGTCCTGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGC
507 TGTAGATCCCACTACCACAACCCTCGGTCCAGCTGGGGCTTAGACATGAAATGAACTCCCTATGC
* * * * *
32587334 CTAAACCAACCCATGAAATCGGGGTACGGGTGCTCAGCCGATCGAAAAGGTAGAATGCGCAAGCC
572 CTAAACCAACCCACGAAATCGGGATACGGGTGCTCAACCGATCGAAAAGGCAAAATGCGCAAGCC
* * * * * *
32587399 GTGGATCGACCCAGTCCCCCATGCGTACTGTCGATCCTGCTGTCGCAGCCCTCAGTCTGGTCCGA
637 GGGGATCGACCCAGTCCCCCATGCGTACTGTCGATCCTCCTGCCGCAACCCTCAGTCCGATCCGA
* * * *
32587464 TCTTAGACTGGGAATGAACTTCATATGCTTAGACAGGGGATGAACTCTGTATGCCTAAGTCAACC
702 TCTTAGACTAGGAATGAACTCCATATGCTTAGACAGAGGATGAACTCCGTATGCCTAAGTCAACC
* * * * *
32587529 CACGAAACAAGCGTACGGGCGCTCAATCGGTCAGAGAGGTCGATCGAAGAGGCATAATACGCAAG
767 CACGAAACAAGCGTACGAGCACTCAACCAGTCAGAGAGGCCGATCGAAGAGGCATAATACGCAAG
32587594 TCAGGGATCAGCCCGGTCCCCCTCTGCATGCTGTCGATCT
832 TCAGGGATCAGCCCGGTCCCCCTCTGCATGCTGTCGATCT
* ** *
32587634 CATTGTCAGTCCTGCTGCCACAACCCTC-AGTTCGGCTGGGGCTTAGACATGGAATGAACTCCGT
1 CACTACCAGTCCTGCTGCCACAACCCTCGA-TTCGACTGGGGCTTAGACATGGAATGAACT-CGT
* * * * * *
32587698 ATGCCTAGGCCAACCCATGAAACGAGCGTGTC-GGC-ACTCAGCCGACCGAAGAGGCAGAATGCG
64 ATGCCTAAGCCAACCCACGAAACGAGCGT-ACAGGCGA-TAAGCTGGCCGAAGAGGCAGAATGCG
32587761 CAAG
127 CAAG
32587765 TCAGGGATCG
Statistics
Matches: 838, Mismatches: 149, Indels: 39
0.82 0.15 0.04
Matches are distributed among these distances:
870 5 0.01
871 220 0.26
872 54 0.06
873 2 0.00
876 2 0.00
878 3 0.00
879 10 0.01
880 479 0.57
881 62 0.07
882 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (871 bp):
CACTACCAGTCCTGCTGCCACAACCCTCGATTCGACTGGGGCTTAGACATGGAATGAACTCGTAT
GCCTAAGCCAACCCACGAAACGAGCGTACAGGCGATAAGCTGGCCGAAGAGGCAGAATGCGCAAG
CCAAGGACCGACCCGATCCCCCCCTACGTGCTACCGATCCTGATGCTGGCACTGCTACAGCAACC
CTCAGTCCGATCCGATCTAAGACTGGGAATGAACTCCGTATGCTTAGACATGAAATAAACTCCGT
ATGCCTAAGCCAACCCACAAAACGAGCATGCGGACGCTCAGCCGGTCGAAAAGGCAGAATGCACA
AGCCGAGGATCGCCCCTACGTGCTATCATCCTGCTACCGTAACACTCGATCCAGTATGATCTTAC
ACAAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAAGAGCGTGCGGGCACTGAGCCGACC
GAAGAGGCATAATGCGCAAGCCGGGGATAGACCCGGTCCCCCTCTACGTACTGTAGATCCCACTA
CCACAACCCTCGGTCCAGCTGGGGCTTAGACATGAAATGAACTCCCTATGCCTAAACCAACCCAC
GAAATCGGGATACGGGTGCTCAACCGATCGAAAAGGCAAAATGCGCAAGCCGGGGATCGACCCAG
TCCCCCATGCGTACTGTCGATCCTCCTGCCGCAACCCTCAGTCCGATCCGATCTTAGACTAGGAA
TGAACTCCATATGCTTAGACAGAGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGT
ACGAGCACTCAACCAGTCAGAGAGGCCGATCGAAGAGGCATAATACGCAAGTCAGGGATCAGCCC
GGTCCCCCTCTGCATGCTGTCGATCT
Found at i:32588204 original size:26 final size:26
Alignment explanation
Indices: 32588163--32588215 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
32588153 TTGATCTGAA
*
32588163 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
32588189 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
32588215 C
1 C
32588216 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:32589824 original size:25 final size:26
Alignment explanation
Indices: 32589796--32589847 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
32589786 GGCTCCAAAT
32589796 CTTAGAC-TGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
32589821 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
32589847 C
1 C
32589848 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 7 0.27
26 19 0.73
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:32590122 original size:159 final size:159
Alignment explanation
Indices: 32589820--32590251 Score: 422
Period size: 159 Copynumber: 2.7 Consensus size: 159
32589810 AACTCCGTAT
* * * * **
32589820 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCATAATCCAACCCATGAAAAGAGCGTGCAGGCACTCAG
* * * * * * * * * * *
32589885 TCGGTCGGAA-AGGTAGAATGCACAAGCCAGGGATTGGCTCGGTTCCCCC-TTGCGTGCTGTCAA
66 -CCGACTGAAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGG-TCCCCCTTTGCATGCTGCCAA
* * * *
32589948 TCCTGCTGCCGCAACCCTTGGTCCGATTCGA
129 TCCCGCTGCCACAACCCTCGGTCCGACTCGA
* * * * * *
32589979 TCTTTGGC-TGGGAATGAACTCCGTATGCATAAGT-CAACCCATTAAAAGAGCGTGTAGGCACTG
1 GCTTAGACAT-GGAATGAACTCCGTATGCATAA-TCCAACCCATGAAAAGAGCGTGCAGGCACTC
* *
32590042 AGCCGACTGAAGGGGCATAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTTTGCATGCTGCCAG
64 AGCCGACTGAAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTTTGCATGCTGCCAA
* * *
32590107 TCCCGCTGCCACAACCCTCGGTCTGACTGGG
129 TCCCGCTGCCACAACCCTCGGTCCGACTCGA
* * * * *
32590138 GCTTAGACATGGAATGAACTCCTTATGCCTAATCCAACCCATGAAATGGGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCATAATCCAACCCATGAAAAGAGCGTGCAGGCACTCAG
* * * * *
32590203 CTGGCTGGAGAGGCATAATGCGCAAGCCGGGGATCAGCCTGGTCCCCCT
66 CCGACTGAAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCT
32590252 CTACGTATGG
Statistics
Matches: 218, Mismatches: 49, Indels: 12
0.78 0.18 0.04
Matches are distributed among these distances:
158 14 0.06
159 203 0.93
160 1 0.00
ACGTcount: A:0.22, C:0.29, G:0.29, T:0.20
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCATAATCCAACCCATGAAAAGAGCGTGCAGGCACTCAG
CCGACTGAAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTTTGCATGCTGCCAATC
CCGCTGCCACAACCCTCGGTCCGACTCGA
Found at i:32590815 original size:26 final size:26
Alignment explanation
Indices: 32590786--32590838 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
32590776 CCAGTCCGAT
*
32590786 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACCCCGTATG
* *
32590812 CTTAGACTGGGGATGAACCCCGTATG
1 CTTAGACTAGGAATGAACCCCGTATG
32590838 C
1 C
32590839 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACCCCGTATG
Found at i:32591710 original size:26 final size:26
Alignment explanation
Indices: 32591668--32591720 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
32591658 CCGGTCCGAT
* *
32591668 CTTAGACTAGGGTTGAACTTCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
*
32591694 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
32591720 C
1 C
32591721 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:32592065 original size:26 final size:26
Alignment explanation
Indices: 32592036--32592088 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
32592026 CCAGTCTGAT
32592036 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCTGTATG
* * * * *
32592062 CTTATATTGGGGATGAACTGTGTATG
1 CTTAGACTAGGAATGAACTCTGTATG
32592088 C
1 C
32592089 CTAAGTTAAC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.13, G:0.26, T:0.34
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCTGTATG
Found at i:32593321 original size:26 final size:26
Alignment explanation
Indices: 32593283--32593335 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
32593273 CAGATCCGAT
32593283 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
32593309 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
32593335 C
1 C
32593336 CTAAGCAAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:32594965 original size:26 final size:26
Alignment explanation
Indices: 32594935--32594987 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
32594925 GTTGATTTAG
32594935 GCATACAAAGTTCATCCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
* * * *
32594961 GCATACGAAGTTGATGCCTAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
32594987 G
1 G
32594988 TTTGGATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAAAGTTCATCCCCAGTCTAA
Found at i:32595439 original size:26 final size:26
Alignment explanation
Indices: 32595403--32595455 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
32595393 GTTGGCTTAG
*
32595403 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCAAGTCTAA
32595429 GCATACAGAGTTCATTCCAAGTCTAA
1 GCATACAGAGTTCATTCCAAGTCTAA
32595455 G
1 G
32595456 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.23, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCAAGTCTAA
Found at i:32596142 original size:159 final size:159
Alignment explanation
Indices: 32595951--32596311 Score: 393
Period size: 159 Copynumber: 2.3 Consensus size: 159
32595941 CGCACATCCA
* * *
32595951 TTTCATGGGTTGGCATAGGCATAGGGAGTTCATTCCATGTCTACGCCCCAG-CCGAACCGAGGAT
1 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTACG-ACCAGACCGAACCGAGGAT
* ** * * * *
32596015 TGTGGTAGCGGGATCGACAGCACGCAGAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTATGCC
65 TGTGGCAGCAAGATCGACAGCACGCAGAGGGGGACCAGGCCGATCCCCAGCTTGCGCATTATACC
* * * * *
32596080 TTTTCGACTGGCTCAGTGCCCACACGCTCG
130 TCTCCGACCGACTCAGCGCCCACACGCTCG
* * * * * * * *
32596110 TTTCATGGGTTGACTTATGCAAACGGAGTTCATTCCCA-ATCTATGATCAGACCGGACCGAGGGT
1 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTACGACCAGACCGAACCGAGGAT
* * * *
32596174 TGTGGCAGCAAGATCGACAGCACGTAGTGGGGGACCAGGCCGATCCCCAGCTTGTGCATTCTACC
65 TGTGGCAGCAAGATCGACAGCACGCAGAGGGGGACCAGGCCGATCCCCAGCTTGCGCATTATACC
* * * *
32596239 TCTCCGGCCGACTGAGCGTCCTCACGCTCG
130 TCTCCGACCGACTCAGCGCCCACACGCTCG
* *
32596269 TTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTA
1 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
32596312 GGCATACGAA
Statistics
Matches: 162, Mismatches: 37, Indels: 6
0.79 0.18 0.03
Matches are distributed among these distances:
158 6 0.04
159 153 0.94
160 3 0.02
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.24
Consensus pattern (159 bp):
TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTACGACCAGACCGAACCGAGGATT
GTGGCAGCAAGATCGACAGCACGCAGAGGGGGACCAGGCCGATCCCCAGCTTGCGCATTATACCT
CTCCGACCGACTCAGCGCCCACACGCTCG
Found at i:32597513 original size:158 final size:158
Alignment explanation
Indices: 32597035--32597536 Score: 528
Period size: 158 Copynumber: 3.2 Consensus size: 158
32597025 CCCAATCTAA
* *
32597035 GCATACGGAGTTCATTCCCA-GTCTAAGATC-GAATCAGATTGAGGGTTGCGATAGCAAGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGAAT-GGATCGAGGGTTGCGATAGCAAGATCGA
* * * * * * **
32597098 CAGCACACAGGGGGGATTGGGTCGATCCCCGGCTTATGTATTCTGCCTCTCCGGCCGGTTGAGCA
64 CAGCACGCAGGGGGGATCGGGTCGATCCCTGGCTTGTGCATTCTGCCTCTCCGACCGACTGAGCA
*
32597163 CCCGCACGC-CTGTTGCGTGGGTTGGCTTAG
129 CCCGCACGCTC-GTTTCGTGGGTTGGCTTAG
* * ** * * * ** * ** * *
32597193 GCATAGGGAGTTTATTCCATGTCTAAGCCCCAG-TTGGATCGAAGGTTGGGGCAACGGGACCGGC
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGAATGGATCGAGGGTTGCGATAGCAAGATCGAC
* * * * *
32597257 AGCACGCAGTGGGGGATCGGGTCGATCCCTGGCTTGTGCATTATGGCTCTCCGACCGACTCAACG
65 AGCACGCAG-GGGGGATCGGGTCGATCCCTGGCTTGTGCATTCTGCCTCTCCGACCGACTGAGCA
* * * ** *
32597322 CCCGAACACTCATTTCAAGGGTTGACTTAG
129 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
*
32597352 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGACTGGATCGAGGGTTGCGATAGCAAGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGAATGGATCGAGGGTTGCGATAGCAAGATCGAC
* * * * *
32597416 AGCACGCAGAGGAGATCAGGTCGATCCCTGGCTTGTGCATTCTGCCTCTCTGACCGACTGAGTAC
65 AGCACGCAGGGGGGATCGGGTCGATCCCTGGCTTGTGCATTCTGCCTCTCCGACCGACTGAGCAC
32597481 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
130 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
*
32597510 GCATACGGGGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
32597537 CATATGGAGT
Statistics
Matches: 269, Mismatches: 67, Indels: 16
0.76 0.19 0.05
Matches are distributed among these distances:
157 6 0.02
158 141 0.52
159 117 0.43
160 5 0.02
ACGTcount: A:0.21, C:0.25, G:0.30, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGAATGGATCGAGGGTTGCGATAGCAAGATCGACA
GCACGCAGGGGGGATCGGGTCGATCCCTGGCTTGTGCATTCTGCCTCTCCGACCGACTGAGCACC
CGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:32597548 original size:26 final size:26
Alignment explanation
Indices: 32597510--32597562 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
32597500 GTTGGCTTAG
*
32597510 GCATACGGGGTTCATTC-CATGTCTAA
1 GCATACGGAGTTCATTCTCA-GTCTAA
*
32597536 GCATATGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCTCAGTCTAA
32597562 G
1 G
32597563 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCTCAGTCTAA
Found at i:32607314 original size:159 final size:158
Alignment explanation
Indices: 32607005--32607437 Score: 370
Period size: 159 Copynumber: 2.7 Consensus size: 158
32606995 TAAACATACA
* * ** * * *
32607005 GAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGTGGCAGTAGGATCGACAGCACGTA
1 GAGTTCATTCCAAGTCTAAGACCCAACCGAACTGAGGGTTGTGGCAGTAGGACCGACAGCACGCA
** * * * * *
32607070 GGGGGGACCGAGCTGATCCCTGACTTGTGCATTCTGCCTTTTCGATCGGCTGAGCACCCGCATGC
66 GGGGGGACCGAGCTGATCCCTGACTTACGCATTCTGCCTCTCCGATCGGCTCAACACCCGCACGC
* *
32607135 CCGTTTCATGGGTTGGCTTAGGCACAGG
131 CCATTTCATGGGTTGACTTAGGCACAGG
* * *
32607163 GAGTTCATTCCAAGTCTAAGCCCCAACCGAACTGAGGGTTGTGGCAGTGGGACCGATAGCACGCA
1 GAGTTCATTCCAAGTCTAAGACCCAACCGAACTGAGGGTTGTGGCAGTAGGACCGACAGCACGCA
* * * *
32607228 GAGGGGGACCG-GATTGAT-CCTCGACTTACGCGTTCTGCCTCTCCGATTGGCTCAACGCCCGCA
66 G-GGGGGACCGAG-CTGATCCCT-GACTTACGCATTCTGCCTCTCCGATCGGCTCAACACCCGCA
* * * **
32607291 CGCTCATTTCGTGGGTTGACTTAGGCATACA
128 CGCCCATTTCATGGGTTGACTTAGGCACAGG
* * * * * * ** * * *
32607322 AAGTTTATTCCCAGTTTAAGA-TCAGACC-AGACCGAGGGTTACGGCAGCAGGATCGATAGCACG
1 GAGTTCATTCCAAGTCTAAGACCCA-ACCGA-ACTGAGGGTTGTGGCAGTAGGACCGACAGCACG
* * * * * * * *
32607385 CAGGGGGGACCGGGCTGGTCCCCGACTTGCACATTCTACCTTTCCGACCGGCT
64 CAGGGGGGACCGAGCTGATCCCTGACTTACGCATTCTGCCTCTCCGATCGGCT
32607438 GAGCACCCAC
Statistics
Matches: 218, Mismatches: 50, Indels: 14
0.77 0.18 0.05
Matches are distributed among these distances:
158 98 0.45
159 120 0.55
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (158 bp):
GAGTTCATTCCAAGTCTAAGACCCAACCGAACTGAGGGTTGTGGCAGTAGGACCGACAGCACGCA
GGGGGGACCGAGCTGATCCCTGACTTACGCATTCTGCCTCTCCGATCGGCTCAACACCCGCACGC
CCATTTCATGGGTTGACTTAGGCACAGG
Found at i:32607906 original size:26 final size:26
Alignment explanation
Indices: 32607855--32607907 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
32607845 GTTTACTTAG
* *
32607855 GCATACCGAGTTCATCCCTAGTCTAA
1 GCATACAGAGTTCATCCCTAGCCTAA
32607881 GCATACAGAGTTCATTCCC-AGCCTAA
1 GCATACAGAGTTCA-TCCCTAGCCTAA
32607907 G
1 G
32607908 ATCGGATCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.28, C:0.30, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCTAGCCTAA
Found at i:32609830 original size:26 final size:26
Alignment explanation
Indices: 32609800--32609852 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32609790 GTTGACTTAG
*
32609800 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
32609826 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
32609852 G
1 G
32609853 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:32611045 original size:26 final size:26
Alignment explanation
Indices: 32611009--32611086 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
32610999 GTTGACTGAG
32611009 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
32611035 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
32611061 GCATATAGAGTTCATT-CCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
32611086 G
1 G
32611087 ATCAGACAAG
Statistics
Matches: 49, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
25 10 0.20
26 39 0.80
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:32611424 original size:159 final size:159
Alignment explanation
Indices: 32611200--32611562 Score: 367
Period size: 159 Copynumber: 2.3 Consensus size: 159
32611190 CGCACGCCCA
* * *
32611200 TTTCATGGGTTGGCTTAGGGATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACAGAGGGTT
1 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACAGAAGGTT
* * * * *
32611265 AAGGTAGCGGGATCGGTAACACGCAAAGGGGGACTAGGCCGATCCCCGACTTG-TGCGTTATGCC
66 AAGATAACAGGATCGATAACACGCAAAGGGGGACTAGGCCGATCCCCGACTTGCT-CATTATGCC
* * * *
32611329 TCTTCGGCCTGCTCA-ATGCCCATACACTTG
130 TCTCCGGCCGGCTCAGATG-CCACACACTCG
* ****
32611359 TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATTGGATCAGATC-GAAG
1 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAG-TCAGA-CAGAAG
* * * * * * * *
32611421 GTTACGATAATAGGATCGATAGCACGTAGAGGGGGACTAGGTCGATCCCTGACTTGCTCATTCTG
63 GTTAAGATAACAGGATCGATAACACGCAAAGGGGGACTAGGCCGATCCCCGACTTGCTCATTATG
* * * *
32611486 CCTCTCCGGCCGGTTGAGCTGCCACACGCTCG
128 CCTCTCCGGCCGGCTCAGATGCCACACACTCG
* *
32611518 TTTCGTGGGTTGGCTTAGGCATACGCAGTTCATTCCATGTCTAAG
1 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
32611563 TCCTAGTCGG
Statistics
Matches: 166, Mismatches: 32, Indels: 12
0.79 0.15 0.06
Matches are distributed among these distances:
158 4 0.02
159 155 0.93
160 7 0.04
ACGTcount: A:0.21, C:0.24, G:0.28, T:0.27
Consensus pattern (159 bp):
TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACAGAAGGTT
AAGATAACAGGATCGATAACACGCAAAGGGGGACTAGGCCGATCCCCGACTTGCTCATTATGCCT
CTCCGGCCGGCTCAGATGCCACACACTCG
Found at i:32612173 original size:159 final size:156
Alignment explanation
Indices: 32611685--32612208 Score: 450
Period size: 159 Copynumber: 3.3 Consensus size: 156
32611675 CACCTGCACA
* * *
32611685 CTCATTTCATGGGTTGACTTATGCATACGAAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAG
1 CTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAG
** * * *
32611750 AGTTGCGGCAGTAGGATCGACAGCACAC-AGGGGGACCGGGCCGA-TCCTAGTCTTGCGCATTCT
66 -GTTGCGGCAACAGGATCGACAGCACACAAGGGGGACCGGGACGATTCC-CGGCTTGCGCATTCT
* * **
32611813 GCCTCTCTGGTCAGTTGAGCACCCGCACG
129 GCCTCTCCGGTCAGTTGAGCGCCTACA-G
* * * * * * ** * *
32611842 CCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAG-CCCCAGCCGGACTG
1 CTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCA-GTCTAAGATCGGA-CCAGAC-C
* * * * * * * *
32611905 AGGGTTGTGGCATCGGGACCGACAGCACATAGAGGGGGATC-GGACGGATCCCCGGCTTGCGCAT
63 AAGGTTGCGGCAACAGGATCGACAGCACACA-AGGGGGACCGGGAC-GATTCCCGGCTTGCGCAT
* *** *
32611969 TATGCCTCTCCGGTCAGCACAACGCCCGTAC-G
126 TCTGCCTCTCCGGTCAGTTGAGCG-CC-TACAG
* * * *
32612001 CTCGTTTCGTGGGTTGATTTAGGCATACGAAGTTCATTCCCAATCTAAGATCGGACCAGACCAAA
1 CTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACC-AA
* *
32612066 GGTTGCGGCAACAGGATCGACATCACACAAGGGGTGACCGGGTCGATTCCCGGCTTGCGCATTCT
65 GGTTGCGGCAACAGGATCGACAGCACACAAGGGG-GACCGGGACGATTCCCGGCTTGCGCATTCT
* * *
32612131 ACCTCTCCGGCCGGTTGAGCGCCTACATG
129 GCCTCTCCGGTCAGTTGAGCGCCTACA-G
* * *
32612160 CTCATTTCATGGGTTGGCTTAGGCATATGGAGTTCATT-CCATGTCTAAG
1 CTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCA-GTCTAAG
32612209 CATACGAAGT
Statistics
Matches: 279, Mismatches: 71, Indels: 32
0.73 0.19 0.08
Matches are distributed among these distances:
156 5 0.02
157 67 0.24
158 14 0.05
159 180 0.65
160 12 0.04
161 1 0.00
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (156 bp):
CTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAG
GTTGCGGCAACAGGATCGACAGCACACAAGGGGGACCGGGACGATTCCCGGCTTGCGCATTCTGC
CTCTCCGGTCAGTTGAGCGCCTACAG
Found at i:32613449 original size:26 final size:26
Alignment explanation
Indices: 32613413--32613465 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
32613403 ATTGACTTAG
32613413 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
32613439 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
32613465 G
1 G
32613466 ATCAGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:32614283 original size:171 final size:169
Alignment explanation
Indices: 32614008--32614330 Score: 461
Period size: 171 Copynumber: 1.9 Consensus size: 169
32613998 ACCAACAGCA
* * * * *
32614008 GGATCGACAGCACGCAGGGGGGACCAGGCTGATCCCTGACTTACGCATTCTTCTCTCCAGTCGGT
1 GGATCGACAGCACGCAAGGGGGACCAGGCTGATCCCTGACTTACGCATTATCCTCTCCAGCCAGT
* * *
32614073 TGAGTGCCCGCATGCTCTTTTCATGGGTTGGCTTAGGCATACG-GAGTTCATTCCATGTCTAAGC
66 TGAGTGCCCGCATGCCCGTTTCATGGGTTGGCTTAGGCATA-GTAAGTTCATTCCATGTCTAAGC
* *
32614137 CCCAGCCGGACTGAGGGTTGTGGTAGCAAGATTGATAGCG
130 CCCAGCCGGACCGAGGGTCGTGGTAGCAAGATTGATAGCG
** *
32614177 GGATCGACAGCACGCAAAGGGGGACTGGGCTGATCCCTTG-CTTGCGCATTATGCCTCTCCAGCC
1 GGATCGACAGCACGC-AAGGGGGACCAGGCTGATCCC-TGACTTACGCATTAT-CCTCTCCAGCC
*
32614241 AGTTGAGTGCCCGTATGCCCGTTTCATGGGTTGGCTTAGGCATAGTAAGTTCATTCCATGTCTAA
63 AGTTGAGTGCCCGCATGCCCGTTTCATGGGTTGGCTTAGGCATAGTAAGTTCATTCCATGTCTAA
*
32614306 GCCCCAGTCGGACCGAGGGTCGTGG
128 GCCCCAGCCGGACCGAGGGTCGTGG
32614331 CAACGGGAAT
Statistics
Matches: 135, Mismatches: 15, Indels: 6
0.87 0.10 0.04
Matches are distributed among these distances:
169 15 0.11
170 29 0.21
171 91 0.67
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.25
Consensus pattern (169 bp):
GGATCGACAGCACGCAAGGGGGACCAGGCTGATCCCTGACTTACGCATTATCCTCTCCAGCCAGT
TGAGTGCCCGCATGCCCGTTTCATGGGTTGGCTTAGGCATAGTAAGTTCATTCCATGTCTAAGCC
CCAGCCGGACCGAGGGTCGTGGTAGCAAGATTGATAGCG
Found at i:32614648 original size:26 final size:26
Alignment explanation
Indices: 32614598--32614650 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
32614588 GTTGGCTTAG
*
32614598 GCATACGAAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCATATCTAA
32614624 GCATAC-AGAGTTCATTCCCA-ATCTAA
1 GCATACGA-AGTTCATT-CCATATCTAA
32614650 G
1 G
32614651 ATTGGACCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 1 0.04
26 20 0.83
27 3 0.12
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATATCTAA
Found at i:32615142 original size:32 final size:32
Alignment explanation
Indices: 32615101--32615170 Score: 140
Period size: 32 Copynumber: 2.2 Consensus size: 32
32615091 CAGCGCCCGC
32615101 TCATTCGTTTCATGGGTTTAGGCATACGGAGT
1 TCATTCGTTTCATGGGTTTAGGCATACGGAGT
32615133 TCATTCGTTTCATGGGTTTAGGCATACGGAGT
1 TCATTCGTTTCATGGGTTTAGGCATACGGAGT
32615165 TCATTC
1 TCATTC
32615171 CTAGTCTAAG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 38 1.00
ACGTcount: A:0.19, C:0.17, G:0.26, T:0.39
Consensus pattern (32 bp):
TCATTCGTTTCATGGGTTTAGGCATACGGAGT
Found at i:32615348 original size:26 final size:26
Alignment explanation
Indices: 32615312--32615364 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32615302 GTTGGCTTAG
*
32615312 GCATGCGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
32615338 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
32615364 G
1 G
32615365 ATCGAACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:32615695 original size:26 final size:26
Alignment explanation
Indices: 32615659--32615711 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
32615649 GTTGACTTAG
32615659 GCATACAGAGTTAATCCCCAGTCTAA
1 GCATACAGAGTTAATCCCCAGTCTAA
* *
32615685 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTAATCCCCAGTCTAA
32615711 G
1 G
32615712 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTAATCCCCAGTCTAA
Found at i:32616046 original size:159 final size:157
Alignment explanation
Indices: 32615685--32616069 Score: 366
Period size: 159 Copynumber: 2.4 Consensus size: 157
32615675 CCCAGTCTAA
* * **
32615685 GCATACAGAGTTCATTCCCAGTCTAAGATCGGA-TCGGACCAAGGGTTGTGGCAGCAGGATCGGT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACT-GGACCAAGGGTTGTGGCAGCAGGACCGAC
* * * ** *
32615749 AGCACGCAAGGGGGACCGAGTTGACCCCAGCTTGCGCATTTTGCCTCTCAGGTCGGCTGAGCGCC
65 AGCACACAAGGGGGACCGAGTCGACCCCAGCTTGCGCATTATGCCTCTCAGACCGGCTCAGCGCC
* * *
32615814 CGCACCCCCATTTTTTGGGTTGGCTTAG
130 CACACCCCCATTTTGTGGGTTGACTTAG
* * ** * * * *
32615842 GCATAGGGAGTTCATT-CCATGTCTAA-ACCCCAACCGAACCTAGGGTTGTGGCAGCGGGACCGA
1 GCATACGGAGTTCATTCCCA-GTCTAAGA-TCGGACTGGACCAAGGGTTGTGGCAGCAGGACCGA
* * *
32615905 CAGCACACAGAGGGGGATCG-GATCGATCCTTC-GCTTGCGCATTATGCCTCTCCGACCGGCTCA
64 CAGCACACA-AGGGGGACCGAG-TCGA-CC-CCAGCTTGCGCATTATGCCTCTCAGACCGGCTCA
* * * *
32615968 GCGCCCACACTCTCGTTTTGTGGGTTGACTTTG
125 GCGCCCACACCCCCATTTTGTGGGTTGACTTAG
* * * * * *
32616001 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGATCGAGGGTTGCGACAGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCAAGGGTTGTGGCAGCAGGACCGACA
32616066 GCAC
66 GCAC
32616070 GTAGGGGGGA
Statistics
Matches: 178, Mismatches: 41, Indels: 16
0.76 0.17 0.07
Matches are distributed among these distances:
156 4 0.02
157 53 0.30
158 12 0.07
159 104 0.58
160 5 0.03
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCAAGGGTTGTGGCAGCAGGACCGACA
GCACACAAGGGGGACCGAGTCGACCCCAGCTTGCGCATTATGCCTCTCAGACCGGCTCAGCGCCC
ACACCCCCATTTTGTGGGTTGACTTAG
Found at i:32616568 original size:26 final size:26
Alignment explanation
Indices: 32616539--32616589 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
32616529 GTTAGCTTAG
*
32616539 GCATGCAGAGTTCATCCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* *
32616565 GCATACAGAGTTCATTCCCAGTCTA
1 GCATACAGAGTTCATCCCCAATCTA
32616590 GGATCAGACC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:32618157 original size:26 final size:26
Alignment explanation
Indices: 32618127--32618178 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
32618117 GTTGACTTAG
32618127 GCATAC-AGAGTTCATCCCCAGTCTAA
1 GCATACGA-AGTTCATCCCCAGTCTAA
* *
32618153 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
32618179 AATTGAACCA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.27
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:32618214 original size:197 final size:197
Alignment explanation
Indices: 32617905--32618269 Score: 446
Period size: 197 Copynumber: 1.9 Consensus size: 197
32617895 GAGCACCCGC
* * * ** *
32617905 ACGCTCGTTTCGTGGGTTGGCTTAGGCTTATGGAGTTCATTCCATGTCCAAGCATACGAAGTTCA
1 ACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCATGTCCAAGCATACGAAGTTCA
* *** * * * * ** **
32617970 TTCCCAGTCTAAGATCAAACTGGATCGAAGGTTACGGCAGTAGGATCGGTAGTATGCGTGGGGGA
66 TTCCCAGTCTAAAATCAAACCACACCGAAGGTTACGGCAGCAGGATCGATAGCACACAAGGGGGA
*
32618035 -TCGGGCCAATCCCCGGCTTGTGCATTCTGCCTCTCCGGCCGACCTCTCTGATCGGCTGAGCGCC
131 CT-GGGCCAATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGACCTCTCTGATCGGCTGAGCGCC
32618099 CAT
195 CAT
*
32618102 ACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCA-GTCTAAGCATACGAAGTTC
1 ACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCAT-CCCATGTCCAAGCATACGAAGTTC
* ** * *
32618166 ATTCCTAGTCTAAAATTGAACCACACCGATGGTTGCGGCAGCAGGATCGATAGCACACAAGGGGG
65 ATTCCCAGTCTAAAATCAAACCACACCGAAGGTTACGGCAGCAGGATCGATAGCACACAAGGGGG
* * *
32618231 ACTGTGCCGATCCCCGGCTTGCGCATTCTGTCTCTCCGG
130 ACTGGGCCAATCCCCGGCTTGCGCATTCTGCCTCTCCGG
32618270 TCGGCTGAGC
Statistics
Matches: 138, Mismatches: 28, Indels: 4
0.81 0.16 0.02
Matches are distributed among these distances:
197 134 0.97
198 4 0.03
ACGTcount: A:0.21, C:0.27, G:0.27, T:0.25
Consensus pattern (197 bp):
ACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCATGTCCAAGCATACGAAGTTCA
TTCCCAGTCTAAAATCAAACCACACCGAAGGTTACGGCAGCAGGATCGATAGCACACAAGGGGGA
CTGGGCCAATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGACCTCTCTGATCGGCTGAGCGCCC
AT
Found at i:32618612 original size:11 final size:11
Alignment explanation
Indices: 32618592--32618624 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
32618582 CTTGGGGCAC
32618592 CATCGTCGGAG
1 CATCGTCGGAG
*
32618603 CATTGTCGGAG
1 CATCGTCGGAG
32618614 CATCGTCGGAG
1 CATCGTCGGAG
32618625 AGCGTAACCG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.18, C:0.24, G:0.36, T:0.21
Consensus pattern (11 bp):
CATCGTCGGAG
Found at i:32619416 original size:26 final size:26
Alignment explanation
Indices: 32619387--32619439 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32619377 GTTGGCTTAG
*
32619387 GCATAGGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
32619413 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
32619439 G
1 G
32619440 ATCGAACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:32619800 original size:26 final size:26
Alignment explanation
Indices: 32619770--32619819 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
32619760 GACTTAGGCA
32619770 TACGGAGTTCATCCCCAGTCTAAGCG
1 TACGGAGTTCATCCCCAGTCTAAGCG
*
32619796 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATCCCCAGTCTAAG
32619820 ATCAGACCAG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (26 bp):
TACGGAGTTCATCCCCAGTCTAAGCG
Found at i:32620146 original size:26 final size:26
Alignment explanation
Indices: 32620111--32620163 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
32620101 GTTAGCTATG
* *
32620111 GCATATGGAGTTC-ATTCCATGTCTAA
1 GCATACGGAGTTCAATCCCA-GTCTAA
32620137 GCATACGGAGTTCAATCCCAGTCTAA
1 GCATACGGAGTTCAATCCCAGTCTAA
32620163 G
1 G
32620164 TGTTTGATGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCAATCCCAGTCTAA
Found at i:32625720 original size:158 final size:157
Alignment explanation
Indices: 32625246--32625738 Score: 562
Period size: 158 Copynumber: 3.1 Consensus size: 157
32625236 CCCAGTCTAA
* * *
32625246 GCATACGAAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGACAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCA-ACCGGACCGAGGGTTGCGGCAGCAGGATCGACA
* * * * *
32625311 GCATGCAGGGGGGACCGGGCTAATCCCCGGCTTACGCATTCTGCCTCTCTGGTCGGCTGAGCACC
65 GCACGCAAGGGGGACCGGGCTAATCCCCGACTTGCGCATTCTGCCTCTCTGGCCGGCTGAGCACC
* *
32625376 CGTACGCCCGTTTCATGGGTTGGCTTAG
130 CGCACGCTCGTTTCATGGGTTGGCTTAG
* ** * * * *
32625404 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCGGGA-CTGA
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAACCGGACCGAGGGTTGCGGCAGCAGGATC-GA
* * * * *
32625467 CAGCACGCAGAGGGGGACCGGG-TCGATCCCCGACTTGTGCATTATGCCTCT-TCGACCGGCTCA
63 CAGCACGCA-AGGGGGACCGGGCT-AATCCCCGACTTGCGCATTCTGCCTCTCT-GGCCGGCTGA
* * *
32625530 ACGCCCGCACGCTCGTTTCATGGGTTGACTTAG
125 GCACCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * * *
32625563 GCATACGGAGTTCATTCCCAGTTTAAGATCGAACCGGACTGAGGGTTGCGGCAGCAGGATCAATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATC-AACCGGACCGAGGGTTGCGGCAGCAGGATCGACA
* * *
32625628 GCACCCAAGGGGGACCGGGCTAATCCTCGACTTGCGCATTCTGCCTCTCTGGCCGACTGAGCACC
65 GCACGCAAGGGGGACCGGGCTAATCCCCGACTTGCGCATTCTGCCTCTCTGGCCGGCTGAGCACC
* * *
32625693 CGCACACTCATTTCGTGGGTTGGCTTAG
130 CGCACGCTCGTTTCATGGGTTGGCTTAG
*
32625721 GTATACGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
32625739 ATGTATAAGC
Statistics
Matches: 273, Mismatches: 51, Indels: 22
0.79 0.15 0.06
Matches are distributed among these distances:
157 4 0.01
158 141 0.52
159 124 0.45
160 4 0.01
ACGTcount: A:0.20, C:0.29, G:0.30, T:0.22
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAACCGGACCGAGGGTTGCGGCAGCAGGATCGACAG
CACGCAAGGGGGACCGGGCTAATCCCCGACTTGCGCATTCTGCCTCTCTGGCCGGCTGAGCACCC
GCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:32626480 original size:26 final size:26
Alignment explanation
Indices: 32626446--32626497 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
32626436 TGGCTTAGGC
32626446 ATACAGAGTTCATT-CCATGTCTAAGA
1 ATACAGAGTTCATTCCCA-GTCTAAGA
*
32626472 ATACGGAGTTCATTCCCAGTCTAAGA
1 ATACAGAGTTCATTCCCAGTCTAAGA
32626498 TTTTGAGCCA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGA
Found at i:32627510 original size:158 final size:157
Alignment explanation
Indices: 32627247--32627705 Score: 440
Period size: 158 Copynumber: 2.9 Consensus size: 157
32627237 CGGACCGAGG
* * * ** * * *
32627247 GTTGCGGCAGCAGGATCGATAGCGCGTAGGGGGGACCGGGCTCGATCCCCGGCTTGCGCATTCTA
1 GTTGCGACAGCAGGATCGACAGCACACAAGGGGGATCGGGCT-GATCCCCGGCTTGCGCATTCTG
* * * * *
32627312 CCTCTCCGTCGGCTGAGCGCC-CACACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCAT
65 CCTCTTCGACGGCTAAGCGCCGCACA--CTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCAT
* * * *
32627376 TCCATGTCTAAGCCCCAG-CCGGACCGAGA
128 TCCATGTATAAGCACCAGACCGAACCAAGA
* * * * * * *
32627405 GTTGTGGCAGCGGGATGGGCAGCACACAGAGGGGGATCGGGCTGATCCCCGGCTTGCACATTATG
1 GTTGCGACAGCAGGATCGACAGCACACA-AGGGGGATCGGGCTGATCCCCGGCTTGCGCATTCTG
* * * * * *
32627470 CCTCTTCAACTGGCTCAGCGCCGCACACTCATTTCGTGGGTTGACTTAGGCATATGGAGTTCATT
65 CCTCTTCGAC-GGCTAAGCGCCGCACACTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT
* *
32627535 CCCA-GTATAAG-ATCAGACCGAACCAAGG
129 -CCATGTATAAGCACCAGACCGAACCAAGA
* * * * * *
32627563 GTTGCGACAGTAGGATCGACAGCACGCAAGGGCGATCGGGCTGATCCTCAGCTTACGCATTCTGC
1 GTTGCGACAGCAGGATCGACAGCACACAAGGGGGATCGGGCTGATCCCCGGCTTGCGCATTCTGC
* * *
32627628 ATCTTCGACCGGCTAAGCTCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT
66 CTCTTCGA-CGGCTAAGC-GCCGCACACTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT
*
32627693 CCATGTTTAAGCA
129 CCATGTATAAGCA
32627706 TACAGAGTTG
Statistics
Matches: 241, Mismatches: 51, Indels: 17
0.78 0.17 0.06
Matches are distributed among these distances:
157 50 0.21
158 161 0.67
159 26 0.11
160 4 0.02
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (157 bp):
GTTGCGACAGCAGGATCGACAGCACACAAGGGGGATCGGGCTGATCCCCGGCTTGCGCATTCTGC
CTCTTCGACGGCTAAGCGCCGCACACTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCC
ATGTATAAGCACCAGACCGAACCAAGA
Found at i:32627996 original size:158 final size:155
Alignment explanation
Indices: 32627735--32628202 Score: 440
Period size: 158 Copynumber: 3.0 Consensus size: 155
32627725 CTAAAATCGA
* * * * *
32627735 ACCGGATCGAGGGTTGCGGCAGTCGGATCGACAGCACGTAGGGGGGACCGGGCCGATGCCTGGCT
1 ACCGGATCGAGGGTTGTGGCAG-CGGATCGATAGCACGCAGGGGGGACCGGGCCGATCCCCGGCT
* * * * *
32627800 TGCTCATTTTGCCTCTCCGGCCAGCTGAGCGCCTGCACGACCGTTTCTTGGGTTGGCTTAGGCAT
65 TACGCATTATGCCTCTCC-GCCGGCTGAGCGCCCGCACG-CCGTTTCTTGGGTTGGCTTAGGCAT
* *
32627865 AGGGAGTTCATTCCATGTCTAACCCCTG
128 AGGGAGTTCATTCCATGTCTAACACCAG
* * * * *
32627893 -TCGGATTGAGGGTTGTGGCAGCGGGACCGATAGGACGCAGAGGGGGACTGGGCCGATCCCCGGC
1 ACCGGATCGAGGGTTGTGGCAGC-GGATCGATAGCACGCAG-GGGGGACCGGGCCGATCCCCGGC
* * * * * * * *
32627957 TTACGCATTATGCCTCTTCGATCGGCTCAGCGCCCGCACG-CTTATTTTGTGGGCTGACTTATGC
64 TTACGCATTATGCCTCTCCG-CCGGCTGAGCGCCCGCACGCCGT-TTCT-TGGGTTGGCTTAGGC
* * * * *
32628021 ATACGTAGTTCATTCCCA-GACTAAGATCAG
126 ATAGGGAGTTCATT-CCATGTCTAACACCAG
* * * * *
32628051 ACCAGATCGAGGTTTGTGGCAGCAGGATCGATAGCATGCTGGGGGGACCAGGCCGATCCCCGGCT
1 ACCGGATCGAGGGTTGTGGCAGC-GGATCGATAGCACGCAGGGGGGACCGGGCCGATCCCCGGCT
* * * *
32628116 TAAGCATTCTAG-CTCTCCGGCTGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCA
65 TACGCATTAT-GCCTCTCC-GCCGGCTGAGCGCCCGCACG-CCGTTTCTTGGGTTGGCTTAGGCA
32628180 TAGGGAGTTCATTCCATGTCTAA
127 TAGGGAGTTCATTCCATGTCTAA
32628203 GCATACGGAG
Statistics
Matches: 242, Mismatches: 56, Indels: 24
0.75 0.17 0.07
Matches are distributed among these distances:
156 3 0.01
157 38 0.16
158 161 0.67
159 38 0.16
160 2 0.01
ACGTcount: A:0.18, C:0.27, G:0.32, T:0.24
Consensus pattern (155 bp):
ACCGGATCGAGGGTTGTGGCAGCGGATCGATAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTT
ACGCATTATGCCTCTCCGCCGGCTGAGCGCCCGCACGCCGTTTCTTGGGTTGGCTTAGGCATAGG
GAGTTCATTCCATGTCTAACACCAG
Found at i:32628207 original size:26 final size:26
Alignment explanation
Indices: 32628177--32628229 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32628167 GTTGGCTTAG
*
32628177 GCATAGGGAGTTCA-TTCCATGTCTAA
1 GCATACGGAGTTCATTTCCA-GTCTAA
32628203 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTTCCAGTCTAA
32628229 G
1 G
32628230 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTTCCAGTCTAA
Found at i:32628228 original size:500 final size:499
Alignment explanation
Indices: 32627137--32628228 Score: 1347
Period size: 500 Copynumber: 2.2 Consensus size: 499
32627127 CCCCTCTGGT
** * * * * *
32627137 TGGCTGAATGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACCGAGTTCA-TCCCTAGTCT
1 TGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCT
* * *
32627201 AAGCATACAGAGTTCATTCTCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCAGGATCGA
65 AAGCATACAGAGTTCATTC-CAGTCTAAAATCGAACCGGACCGAGGGTTGCGGCAGCAGGATCGA
* * * *
32627266 TAGCGCGTAGGGGGGACCGGGCTCGATCCCCGGCTTGCGCATTCTACCTCTCCGTCGGCTGAGCG
129 CAGCACGTAGGGGGGACCGGGCTCGATCCCCGGCTTGCGCATTCTACCTCTCCGCCAGCTGAGCG
*
32627331 CCCACACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCC
194 CCCACACGACCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCC
** * * *
32627396 GGACCGAGAGTTGTGGCAGCGGGATGGGCAGCACACAGAGGGGGATCGGGCTGATCCCCGGCTTG
259 GGACCGAGAGTTGTGGCAGCGGGACCGACAGCACACAGAGGGGGATCGGGCCGATCCCCGGCTTA
* *
32627461 CACATTATGCCTCTTCAACTGGCTCAGCGCCGCACACTCATTTCGTGGGTTGACTTAGGCATATG
324 CACATTATGCCTCTTCAACTGGCTCAGCGCCGCACACTCATTTCGTGGGCTGACTTAGGCATACG
*
32627526 GAGTTCATTCCCAGTATAAGATCAGACCGAACCAAGGGTTGCGACAGTAGGATCGACAGCACGCA
389 GAGTTCATTCCCAGTATAAGATCAGACCGAACCAAGGGTTGCGACAGCAGGATCGACAGCACGCA
* * * * * *
32627591 AGGGCGATCGGGCTGATCCTCAGCTTACGCATTCTGCATCTTCGAC
454 AGGGCGACCAGGCCGATCCCCAGCTTAAGCATTCTGCATCTCCGAC
* * * *
32627637 CGGCTAAGCTCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTTTA
1 TGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
* * *
32627702 AGCATACAGAGTTGATGCCTAGTCTAAAATCGAACCGGATCGAGGGTTGCGGCAGTC-GGATCGA
66 AGCATACAGAGTTCATTCC-AGTCTAAAATCGAACCGGACCGAGGGTTGCGGCAG-CAGGATCGA
* * * * *
32627766 CAGCACGTAGGGGGGACCGGGC-CGATGCCTGGCTTGCTCATTTTGCCTCTCCGGCCAGCTGAGC
129 CAGCACGTAGGGGGGACCGGGCTCGATCCCCGGCTTGCGCATTCTACCTCTCC-GCCAGCTGAGC
** * * *
32627830 GCCTGCACGACCGTTTCTTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA-CCCCTGT
193 GCCCACACGACCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGC
** * * * *
32627894 CGGATTGAGGGTTGTGGCAGCGGGACCGATAGGACGCAGAGGGGGA-CTGGGCCGATCCCCGGCT
258 CGGACCGAGAGTTGTGGCAGCGGGACCGACAGCACACAGAGGGGGATC-GGGCCGATCCCCGGCT
* * * * * *
32627958 TACGCATTATGCCTCTTCGA-TCGGCTCAGCGCCCGCACGCTTATTTTGTGGGCTGACTTATGCA
322 TACACATTATGCCTCTTCAACT-GGCTCAGCG-CCGCACACTCATTTCGTGGGCTGACTTAGGCA
* * * * * * *
32628022 TACGTAGTTCATTCCCAG-ACTAAGATCAGACC-AGATCGAGGTTTGTGGCAGCAGGATCGATAG
385 TACGGAGTTCATTCCCAGTA-TAAGATCAGACCGA-ACCAAGGGTTGCGACAGCAGGATCGACAG
* ** * * *
32628085 CATGCTGGGGGGACCAGGCCGATCCCCGGCTTAAGCATTCTAGC-TCTCCGGC
448 CACGCAAGGGCGACCAGGCCGATCCCCAGCTTAAGCATTCT-GCATCTCCGAC
* *
32628137 TGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTA
1 TGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
*
32628202 AGCATACGGAGTTCATTTCCAGTCTAA
66 AGCATACAGAGTTCA-TTCCAGTCTAA
32628229 GATTTTGAGC
Statistics
Matches: 501, Mismatches: 80, Indels: 22
0.83 0.13 0.04
Matches are distributed among these distances:
498 2 0.00
499 111 0.22
500 378 0.75
501 10 0.02
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (499 bp):
TGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
AGCATACAGAGTTCATTCCAGTCTAAAATCGAACCGGACCGAGGGTTGCGGCAGCAGGATCGACA
GCACGTAGGGGGGACCGGGCTCGATCCCCGGCTTGCGCATTCTACCTCTCCGCCAGCTGAGCGCC
CACACGACCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGG
ACCGAGAGTTGTGGCAGCGGGACCGACAGCACACAGAGGGGGATCGGGCCGATCCCCGGCTTACA
CATTATGCCTCTTCAACTGGCTCAGCGCCGCACACTCATTTCGTGGGCTGACTTAGGCATACGGA
GTTCATTCCCAGTATAAGATCAGACCGAACCAAGGGTTGCGACAGCAGGATCGACAGCACGCAAG
GGCGACCAGGCCGATCCCCAGCTTAAGCATTCTGCATCTCCGAC
Found at i:32629242 original size:26 final size:26
Alignment explanation
Indices: 32629212--32629264 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
32629202 GTTGGCTTAG
32629212 GCATAC-AGAGTTCATT-CCATGTCTAA
1 GCATACGA-AGTTCATTCCCA-GTCTAA
32629238 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
32629264 G
1 G
32629265 ATCGGACCGC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:32630171 original size:26 final size:25
Alignment explanation
Indices: 32630136--32630187 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
32630126 GTTGACTTAG
*
32630136 GCATAGGAGTTCATCCCCAGTCTAA
1 GCATAGGAGTCCATCCCCAGTCTAA
*
32630161 GCATATGGAGTCCATTCCCAGTCTAA
1 GCATA-GGAGTCCATCCCCAGTCTAA
32630187 G
1 G
32630188 ATTGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 5 0.21
26 19 0.79
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (25 bp):
GCATAGGAGTCCATCCCCAGTCTAA
Found at i:32630490 original size:159 final size:158
Alignment explanation
Indices: 32630194--32630495 Score: 363
Period size: 159 Copynumber: 1.9 Consensus size: 158
32630184 TAAGATTGGA
* * *
32630194 TCGGACAGAGGGTTACGACAACAGGATCGGCAGCACGTAGGGGGGGCCGAGCCTATCCCCGGCTT
1 TCGGACAGAGGGTTACGACAACAGGATCGGCAGCACGCAGGGGGGACCGAGCCGATCCCCGGCTT
* * * *
32630259 ACGCATTTTGCCTCTTCGATCGACTGAGTGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATA
66 ACGCATTATGCCTCTTCGATCGACTCAGTGCCCGCACGCCCATTTCATGGGTTGACTTAGGCATA
* *
32630324 GGGAGTTCATTCCATGTCTAAGCCCCAG
131 CGAAGTTCATTCCATGTCTAAGCCCCAG
* ** * * * * *
32630352 TCGGACTGAGGGTTGTGGCAACAGGATCGGCAGCATGCAGAGGGGGATCGGGCCGATCCTCGGCT
1 TCGGACAGAGGGTTACGACAACAGGATCGGCAGCACGCAG-GGGGGACCGAGCCGATCCCCGGCT
* * * ** * *
32630417 TACGTATTATGCCTCTTTGA-CTGGCTCAGTGCCCGCACGTTCGTTTCATGGGTTGACTTATGCA
65 TACGCATTATGCCTCTTCGATC-GACTCAGTGCCCGCACGCCCATTTCATGGGTTGACTTAGGCA
32630481 TACGAAGTTCATTCC
129 TACGAAGTTCATTCC
32630496 CAAAAAAAAT
Statistics
Matches: 118, Mismatches: 24, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
158 35 0.30
159 83 0.70
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.25
Consensus pattern (158 bp):
TCGGACAGAGGGTTACGACAACAGGATCGGCAGCACGCAGGGGGGACCGAGCCGATCCCCGGCTT
ACGCATTATGCCTCTTCGATCGACTCAGTGCCCGCACGCCCATTTCATGGGTTGACTTAGGCATA
CGAAGTTCATTCCATGTCTAAGCCCCAG
Found at i:32632846 original size:26 final size:26
Alignment explanation
Indices: 32632810--32632862 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
32632800 GTTGGCTTAG
*
32632810 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
32632836 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
32632862 G
1 G
32632863 ATTTTGAGTC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:32633841 original size:158 final size:158
Alignment explanation
Indices: 32633469--32634043 Score: 559
Period size: 158 Copynumber: 3.6 Consensus size: 158
32633459 CCACCTGTTT
* * * * * **
32633469 GATCCCCGGCTT-CGCATCCTGTCTCTCTGGTAGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTT
1 GATCCCCGGCTTGCGCATTCTGCCTCTCTGATCGGCTAAGCACCCGCACGCTCGTTTCGTGGGTT
* ** * *
32633533 GACTTAGGCATACAGAGTTCATTCCCAGTCTAAG-ATCGGATCATATCAAGGGTTGTGGTAGCAG
66 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA-CCAATCAGATCGAGGGTTGTGGTAGCAG
* * *
32633597 GATCGATAGCACGCAGGGGGGATCGGGTC
130 GATCGACAGCACGCAGGGGGGACCGGGCC
* * * * * * * * * *
32633626 GATCCCCGGCTTGCGCATTCTACATCTCCGATCGACTGAGCGCCCACTCCCCCGTTTCGTGGGTT
1 GATCCCCGGCTTGCGCATTCTGCCTCTCTGATCGGCTAAGCACCCGCACGCTCGTTTCGTGGGTT
* * * * *
32633691 GGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCCAA-CCGAATCGAGGGTTGTGGCAGCA
66 GACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGCACCAATCAG-ATCGAGGGTTGTGGTAGCA
*
32633754 GGACCGACAGCACGCAGAGGGGGACCGGGCC
129 GGATCGACAGCACGCAG-GGGGGACCGGGCC
* * * * * * * *
32633785 TATCCCCGGCTTGCGCATTATGCCTATTTGGTCGGCTCAGC-CCCGCACGCTTGTTTCGTGAGTT
1 GATCCCCGGCTTGCGCATTCTGCCTCTCTGATCGGCTAAGCACCCGCACGCTCGTTTCGTGGGTT
* * * ** *
32633849 GACTTATGCATACGGAGTTCATTCCCAGTCTAAG-ATCAGATCAGATTGAGGGTTGCAGTAGTAG
66 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCACCA-ATCAGATCGAGGGTTGTGGTAGCAG
* *
32633913 GATCAACAACACGCAGCGGGGGACCGGGCC
130 GATCGACAGCACGCAG-GGGGGACCGGGCC
* ** * * * *
32633943 GATCCTCTACTTGCGCATTCTGCCTCTCTGATCGGCTAAGCACCCGTATGCTTGTTTCCTGGGTT
1 GATCCCCGGCTTGCGCATTCTGCCTCTCTGATCGGCTAAGCACCCGCACGCTCGTTTCGTGGGTT
*
32634008 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
66 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
32634044 TACGGAGTTC
Statistics
Matches: 335, Mismatches: 73, Indels: 17
0.79 0.17 0.04
Matches are distributed among these distances:
157 18 0.05
158 218 0.65
159 98 0.29
160 1 0.00
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.25
Consensus pattern (158 bp):
GATCCCCGGCTTGCGCATTCTGCCTCTCTGATCGGCTAAGCACCCGCACGCTCGTTTCGTGGGTT
GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCACCAATCAGATCGAGGGTTGTGGTAGCAGG
ATCGACAGCACGCAGGGGGGACCGGGCC
Found at i:32634051 original size:26 final size:26
Alignment explanation
Indices: 32634015--32634066 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
32634005 GTTGGCTTAG
32634015 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
32634041 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
32634067 AATTTTGAGC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:32634753 original size:26 final size:26
Alignment explanation
Indices: 32634723--32634775 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
32634713 GTTGGCTTAG
32634723 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
32634749 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
32634775 G
1 G
32634776 ATTTTAAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:32635948 original size:26 final size:26
Alignment explanation
Indices: 32635918--32635970 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
32635908 GTTGGCTTAG
32635918 GCATATGGAGTTCATTCC-ATGTCTAA
1 GCATATGGAGTTCATTCCTA-GTCTAA
32635944 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATATGGAGTTCATTCCTAGTCTAA
32635970 G
1 G
32635971 ATCAGAACGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.19, G:0.21, T:0.34
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCTAGTCTAA
Found at i:32637398 original size:25 final size:25
Alignment explanation
Indices: 32637364--32637413 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
32637354 GGCGCTTAGG
32637364 CATATGGAGTTCATTCCAAGTCTAA
1 CATATGGAGTTCATTCCAAGTCTAA
*
32637389 CATATGGAGTTCATTCCTAGTCTAA
1 CATATGGAGTTCATTCCAAGTCTAA
32637414 GATCAGACCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.30, C:0.20, G:0.16, T:0.34
Consensus pattern (25 bp):
CATATGGAGTTCATTCCAAGTCTAA
Found at i:32638067 original size:159 final size:158
Alignment explanation
Indices: 32637794--32638263 Score: 565
Period size: 159 Copynumber: 2.9 Consensus size: 158
32637784 AGATCAATCC
* * *
32637794 GAACTGAGGGTTGCGACAGCAGGATCGACAGCACGCAAGGGGGACCGGGCCGATCCCCGACTTGC
1 GAAC-GAGGGTTGCGGCAGCAGGATCGACAGCACGCAAGGGGGA-CGGGCTGATCCCCGGCTTGC
* * *
32637859 GCATTCTGCCTCTCCGGTCGACTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGG
64 GCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACG
*
32637924 GAGTTCATTCCATGTCTAAGCCCTAG-CCA
129 GAGTTCATTCCATGTCTAAGCACTAGACCA
* * *
32637953 GAACGAGGGTTGTGGCAGCGGGA-CTGACAGCATGCAGAGGGGGATCGGGCTGATCCCCGGCTTG
1 GAACGAGGGTTGCGGCAGCAGGATC-GACAGCACGCA-AGGGGGA-CGGGCTGATCCCCGGCTTG
* * * * * * *
32638017 CGCATTATGCCTCTTCGGTCGGCTCAGCGCCCGCACGCTCATTTCTTGGGTTGACTTATGCATAC
63 CGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAC
* * *
32638082 GAAGTTCATTCC-TAGTCTAAG-ATTGGACCA
128 GGAGTTCATTCCAT-GTCTAAGCACTAGACCA
* *
32638112 GACCGAGGGTTGCGGCAGCAGGATCGACAGCACACAAGGGGGGACTGGG-TCGATCCCCGGCTTG
1 GAACGAGGGTTGCGGCAGCAGGATCGACAGCACGCAA-GGGGGAC-GGGCT-GATCCCCGGCTTG
* * * *
32638176 TGCATTCTACCTCTCCGG-CTGGCTGAGCACCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATA
63 CGCATTCTGCCTCTCCGGTC-GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATA
*
32638240 TGGAGTTCATTCCATGTCTAAGCA
127 CGGAGTTCATTCCATGTCTAAGCA
32638264 TACGGAGTTC
Statistics
Matches: 261, Mismatches: 39, Indels: 21
0.81 0.12 0.07
Matches are distributed among these distances:
157 1 0.00
158 33 0.13
159 224 0.86
160 3 0.01
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.22
Consensus pattern (158 bp):
GAACGAGGGTTGCGGCAGCAGGATCGACAGCACGCAAGGGGGACGGGCTGATCCCCGGCTTGCGC
ATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGA
GTTCATTCCATGTCTAAGCACTAGACCA
Found at i:32638271 original size:26 final size:26
Alignment explanation
Indices: 32638235--32638287 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32638225 GTTGGCTTAG
*
32638235 GCATATGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
32638261 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
32638287 G
1 G
32638288 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:32638989 original size:26 final size:26
Alignment explanation
Indices: 32638959--32639011 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32638949 GTTGACTTAG
*
32638959 GCATACGGAGTTCA-TCTCCAGTCTAA
1 GCATACGAAGTTCATTC-CCAGTCTAA
32638985 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
32639011 G
1 G
32639012 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:32640558 original size:500 final size:500
Alignment explanation
Indices: 32639688--32641253 Score: 1994
Period size: 500 Copynumber: 3.1 Consensus size: 500
32639678 GCTCGTTTCA
* * * * * *
32639688 TGGGTTGGGTTAGGCATATGCAGTTCATTCCATGTCTAAGCCCCAG-CTGGACCAAAGGTTGTAG
1 TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTC-GGACCAAGGGTAGTGG
* ** * *
32639752 CAGCGGGACTGGCAGCATGCAGAGGGGGACTAGGTCGATCCCTGACTTGTGCATTATGCCTCTCC
65 CAGCGGGACTGGCAGCACGCAGAGGGGGACCGGGTCGATCCCAG-GTTGTGCATTATGCCTCTCC
* * * ** *
32639817 GGTCTGCTCAACGCCCGCACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGC
129 GGTCGGCTCAGCGCCCGCACGTTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
* * * *
32639882 CTAAGATCAGATCGGATCGAGGGTTGC-AGCAGTAGGATCAACAACACGCA-GGGGGACGTGACT
194 CTAAGATCAGACCGGATCGAGGGTTGCGA-CAGTAGGATCAACAGCACGCAGGGGGGACGGGACC
* * * * * * * *
32639945 GGTCCTCGGCTTGCACATTCTGCCTCTCCGGCCAATTGAACGCCCGCACACTCATTTCGTTGGTT
258 GATCCCCGACTTGCACATTCTGCCTCTCGGGTCGATTGAACGCCCGCACACTCGTTTCGTGGGTT
* *
32640010 GGCTTAGGCATACGGAGTTGATTCCATGTCTAACCATACGGAGTTCATTCCCAGACTATGATCAC
323 GGCTTAGGCATACGGAGTTGATTCCATGTCTAACCATACGGAGTTCATTCCCAGACTAAGATCAG
*
32640075 ACTAGACCGAGGGTTGCGGCAATAGGATCAGCAGCACGTAGGGGGGACCGGGTCGATCCCCGGCT
388 ACTAGACCGAAGGTTGCGGCAATAGGATCAGCAGCACGTAGGGGGGACCGGGTCGATCCCCGGCT
* * * *
32640140 TACATATTCTGCTTCTCCAACCAGTTGACCACCTGTAAGCTCATTTTG
453 TACACATTCTGCTTCTCCAACCAGCTGACCGCCCGTAAGCTCATTTTG
*
32640188 TGGGTTGGCTTAGGCATAGGGAGTTCATTCCGTGTCTAAGCCCCAGTCGGACCAAGGGTAGTGGC
1 TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCAAGGGTAGTGGC
32640253 AG-GGGACTGGCAGCACGCAGAGGGGGACCGGGTCGATCCTCAGGTTGTGCATTATGCCTCTCCG
66 AGCGGGACTGGCAGCACGCAGAGGGGGACCGGGTCGATCC-CAGGTTGTGCATTATGCCTCTCCG
* * *
32640317 GCCGGCTCAGCGCCTGCACGTTCCTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
130 GTCGGCTCAGCGCCCGCACGTTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
** * *
32640382 TAAGATTGGACCAGATCAAGGGTTGCGACAGTAGGATCAACAGCACGCAGGGGGGACGGGACCGA
195 TAAGATCAGACCGGATCGAGGGTTGCGACAGTAGGATCAACAGCACGCAGGGGGGACGGGACCGA
*
32640447 TCCCCGACTTGCACATTCTGCCTCTCGGGTCGATTGAACGCCCACACACTCGTTTCGTGGGTTGG
260 TCCCCGACTTGCACATTCTGCCTCTCGGGTCGATTGAACGCCCGCACACTCGTTTCGTGGGTTGG
* *
32640512 CTTAGGCATACGAAGTTGATTCCATGTCTAACCATACGGAGTTCATTCCTAGACTAAGATCAGAC
325 CTTAGGCATACGGAGTTGATTCCATGTCTAACCATACGGAGTTCATTCCCAGACTAAGATCAGAC
* * * **
32640577 CAGACCGAAGGTTGCGGCAATAGTATC-GACAGCATGTAGGGGGGACCAAGTCGATCCCCGGCTT
390 TAGACCGAAGGTTGCGGCAATAGGATCAG-CAGCACGTAGGGGGGACCGGGTCGATCCCCGGCTT
* * * * * *
32640641 ACACATTATGCCTGTCCAACCAGCTGACTGCCCGTAAGCCCATTTTA
454 ACACATTCTGCTTCTCCAACCAGCTGACCGCCCGTAAGCTCATTTTG
*
32640688 TGGGTTGGCTTAGGCATAGGGAGTTCATTCCGTGTCTAAGCCCCAGTCGGACCAAGGGTAGTGGC
1 TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCAAGGGTAGTGGC
* * * * *
32640753 AGTGGGACTGGTAGCACGCAGAGGGGGACCGGGTTGATCCCCGGGTTATGCATTATGCCTCTCCG
66 AGCGGGACTGGCAGCACGCAGAGGGGGACCGGGTCGAT-CCCAGGTTGTGCATTATGCCTCTCCG
* *
32640818 ATCGGCTCAGCGCCCGCACGCTT-GTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
130 GTCGGCTCAGCGCCCGCACG-TTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
* * * *
32640882 CTAAGATCAGACCGGATCGAGGGTTACGGCAGCAGGATCAACAGCACGCAGGGGGGACCGGACCG
194 CTAAGATCAGACCGGATCGAGGGTTGCGACAGTAGGATCAACAGCACGCAGGGGGGACGGGACCG
* ** * * * * * * * * * *
32640947 ATCCCTGACTTGTGCATTTTCCCTTTTCGGCT-GGTTGAGCACCCGTACGCTCGTTTGGTGGGTT
259 ATCCCCGACTTGCACATTCTGCC-TCTCGGGTCGATTGAACGCCCGCACACTCGTTTCGTGGGTT
* *
32641011 GGCTTAGGCATACGGAGTTGATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG
323 GGCTTAGGCATACGGAGTTGATTCCATGTCTAACCATACGGAGTTCATTCCCAGACTAAGATCAG
* * ** * * * * *
32641076 ACTAGACCGAAGGTTACGGTAGCAGGACCAGCAGCACGCAGGGGAAGACCGGGCCGATCCCCGAC
388 ACTAGACCGAAGGTTGCGGCAATAGGATCAGCAGCACGTAGGGG-GGACCGGGTCGATCCCCGGC
* * * *** * * * ** *
32641141 TTACGCATTCTGCTCCTTCGGTCGGCTGAGCGCCCGTATGCTTGTTTCG
452 TTACACATTCTGCTTCTCCAACCAGCTGACCGCCCGTAAGCTCATTTTG
* * * * * *
32641190 TGGGTTGGCTTCGACATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGG
1 TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCAAGGGTAGTGG
32641254 TAGTAGGACC
Statistics
Matches: 924, Mismatches: 131, Indels: 20
0.86 0.12 0.02
Matches are distributed among these distances:
499 152 0.16
500 351 0.38
501 307 0.33
502 114 0.12
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (500 bp):
TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCAAGGGTAGTGGC
AGCGGGACTGGCAGCACGCAGAGGGGGACCGGGTCGATCCCAGGTTGTGCATTATGCCTCTCCGG
TCGGCTCAGCGCCCGCACGTTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
AAGATCAGACCGGATCGAGGGTTGCGACAGTAGGATCAACAGCACGCAGGGGGGACGGGACCGAT
CCCCGACTTGCACATTCTGCCTCTCGGGTCGATTGAACGCCCGCACACTCGTTTCGTGGGTTGGC
TTAGGCATACGGAGTTGATTCCATGTCTAACCATACGGAGTTCATTCCCAGACTAAGATCAGACT
AGACCGAAGGTTGCGGCAATAGGATCAGCAGCACGTAGGGGGGACCGGGTCGATCCCCGGCTTAC
ACATTCTGCTTCTCCAACCAGCTGACCGCCCGTAAGCTCATTTTG
Found at i:32641047 original size:26 final size:26
Alignment explanation
Indices: 32641018--32641070 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32641008 GTTGGCTTAG
*
32641018 GCATACGGAGTTGATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
32641044 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
32641070 G
1 G
32641071 ATCAGACTAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:32641359 original size:26 final size:26
Alignment explanation
Indices: 32641307--32641359 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
32641297 GTTGACTTAG
* * * *
32641307 GCATACGGAGTTCATCCCCAGTTTAA
1 GCATACGAAGTTAATCCCCAATCTAA
*
32641333 GCATACGAAGTTAATTCCCAATCTAA
1 GCATACGAAGTTAATCCCCAATCTAA
32641359 G
1 G
32641360 ATCAGACCAG
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTAATCCCCAATCTAA
Found at i:32641654 original size:12 final size:12
Alignment explanation
Indices: 32641637--32641671 Score: 70
Period size: 12 Copynumber: 2.9 Consensus size: 12
32641627 CCGAAGGTTG
32641637 CAGCAGCAGGAC
1 CAGCAGCAGGAC
32641649 CAGCAGCAGGAC
1 CAGCAGCAGGAC
32641661 CAGCAGCAGGA
1 CAGCAGCAGGA
32641672 TCGACAGCAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.34, C:0.31, G:0.34, T:0.00
Consensus pattern (12 bp):
CAGCAGCAGGAC
Found at i:32643773 original size:158 final size:158
Alignment explanation
Indices: 32643502--32643791 Score: 368
Period size: 158 Copynumber: 1.8 Consensus size: 158
32643492 TCTAAGATCG
* * * * *
32643502 AACCGGACTGAAGGTTGCGGTAGTAGGATCGACAGCTCGTAGAGGGGACCAGGTCGATCCCCGAC
1 AACCGGACCGAAGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGACCAGGTCGATCCCCGAC
* * * * * * **
32643567 TTGCGCATTCTACCTCTCCGGCTGGTTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGTTTAGGCA
66 TTGCGCATTATACCTCTCCAGCTGGCTCAGCGCCCACACGCCCATTTCGTGGGTTGACTTAGGCA
32643632 TAGGGAGTTGATTACATGTCTAAGCCCC
131 TAGGGAGTTGATTACATGTCTAAGCCCC
* * *
32643660 AACCGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGGATCAGGTCGATCCCC-A
1 AACCGGACCGAAGGTTGCGGCAGCAGGATCGACAGCACGCAGA-GGGGACCAGGTCGATCCCCGA
* * **
32643724 TCTTGCGCATTATGCCTCTCCAG-TGGCTCAGTGCCCACACGTTCATTTCGTGGGTTGACTTAGG
65 -CTTGCGCATTATACCTCTCCAGCTGGCTCAGCGCCCACACGCCCATTTCGTGGGTTGACTTAGG
32643788 CATA
129 CATA
32643792 CAGAGTTCAT
Statistics
Matches: 110, Mismatches: 20, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
158 73 0.66
159 37 0.34
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (158 bp):
AACCGGACCGAAGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGACCAGGTCGATCCCCGAC
TTGCGCATTATACCTCTCCAGCTGGCTCAGCGCCCACACGCCCATTTCGTGGGTTGACTTAGGCA
TAGGGAGTTGATTACATGTCTAAGCCCC
Found at i:32644965 original size:170 final size:171
Alignment explanation
Indices: 32644659--32645005 Score: 464
Period size: 170 Copynumber: 2.0 Consensus size: 171
32644649 ATCGGATCGG
* * *
32644659 TCCCCGACTTGCGCATTCTACCTCTCTGGCCGGCTGAGCACCCGCACACTCGTTTCATGAGTTGG
1 TCCCCGACTTACGCATTCTACCTCTCCGGCCGACTGAGCACCCGCACACTCGTTTCATGAGTTGG
* * * * * *
32644724 CTTAGGCATACGGAGTTCACTCCATGTCTAAGCCCTAGCCGGACTGAGGGTTGTGGCAGCTGGAT
66 CTTAGGCATACAGACTTCACTCCATGTCTAAGCCCCAGCCGGACTGAAGGTTGTGGCAGCAGGAC
* *
32644789 TGGTAGCAGGATCGACAGCACACATAGGGGGACCGGGCTGA
131 TGGTAGCAGGATCGACAGCACACAAAGGGGGACCAGGCTGA
* * ** * * *
32644830 TCCCCGACTTATGCATTCTGCCTCTCCGGTTGACTGAGCGCCCGTACACTCG-TTCATGGGTTGG
1 TCCCCGACTTACGCATTCTACCTCTCCGGCCGACTGAGCACCCGCACACTCGTTTCATGAGTTGG
* * *
32644894 CTTAGGCATACAGACTTCATTCCATGTCTAAGCCCCAGCTGGA-TCGAAGGTTGTGGTAGCAGGA
66 CTTAGGCATACAGACTTCACTCCATGTCTAAGCCCCAGCCGGACT-GAAGGTTGTGGCAGCAGGA
* *
32644958 CTGGTAGCGGGATCGACAGCACACAAAGGGGGATCAGGCTGA
130 CTGGTAGCAGGATCGACAGCACACAAAGGGGGACCAGGCTGA
32645000 TCCCCG
1 TCCCCG
32645006 GCTTGCACAT
Statistics
Matches: 152, Mismatches: 23, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
169 1 0.01
170 108 0.71
171 43 0.28
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (171 bp):
TCCCCGACTTACGCATTCTACCTCTCCGGCCGACTGAGCACCCGCACACTCGTTTCATGAGTTGG
CTTAGGCATACAGACTTCACTCCATGTCTAAGCCCCAGCCGGACTGAAGGTTGTGGCAGCAGGAC
TGGTAGCAGGATCGACAGCACACAAAGGGGGACCAGGCTGA
Found at i:32645112 original size:26 final size:26
Alignment explanation
Indices: 32645083--32645135 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
32645073 GTTGACTTAG
32645083 GCATACGGAGTTTATCCCCAGTCTAA
1 GCATACGGAGTTTATCCCCAGTCTAA
* *
32645109 GCATATGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTTATCCCCAGTCTAA
32645135 G
1 G
32645136 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTTATCCCCAGTCTAA
Found at i:32645611 original size:26 final size:26
Alignment explanation
Indices: 32645582--32645634 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
32645572 GTTGGCTTAG
32645582 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
**
32645608 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
32645634 G
1 G
32645635 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:32646145 original size:89 final size:89
Alignment explanation
Indices: 32645989--32646170 Score: 213
Period size: 89 Copynumber: 2.0 Consensus size: 89
32645979 TACGGAGTTT
* ** ** * *
32645989 ATTCCCAGTCAAAGATCGGACCAGACCAAGGGTTGCGGTAGCAGGATCGATAGCACGTAGGGGGG
1 ATTCCCAGTCAAAGATCGAACCAGACCAAGGGTTGCGACAGCAGGATCGATAGCACAAAAGAGGG
32646054 ATCAAGCCGAT-CCTCGACTTGTGC
66 ATCAAGCCGATCCCT-GACTTGTGC
* ** * *
32646078 ATTCCCAGTCTAAGATCGAACCATTCCAAGGGTTGTGACAGCAGGATCGATAGCACAAAAGATGG
1 ATTCCCAGTCAAAGATCGAACCAGACCAAGGGTTGCGACAGCAGGATCGATAGCACAAAAGAGGG
** *
32646143 ATCGGGCCGATCCCTGGCTTGTGC
66 ATCAAGCCGATCCCTGACTTGTGC
32646167 ATTC
1 ATTC
32646171 TACCTCTTTG
Statistics
Matches: 77, Mismatches: 15, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
89 74 0.96
90 3 0.04
ACGTcount: A:0.26, C:0.25, G:0.29, T:0.20
Consensus pattern (89 bp):
ATTCCCAGTCAAAGATCGAACCAGACCAAGGGTTGCGACAGCAGGATCGATAGCACAAAAGAGGG
ATCAAGCCGATCCCTGACTTGTGC
Found at i:32646732 original size:158 final size:157
Alignment explanation
Indices: 32646512--32646933 Score: 445
Period size: 158 Copynumber: 2.7 Consensus size: 157
32646502 CAGGAGGGAC
* ** * * * * *
32646512 CGAGCTGATCCCCGGGTTACGCATTTTGCCTCTCCGACTGACTGAGCACCCGCACGCCCATTTCA
1 CGAGCCGATCCCCGACTTACGCATTATGCCTCTCCGAC-GGCTGAGCGCCCGCACGCTCATTTCG
* * ** *
32646577 TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCAAGGGTTG-TGG
65 TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAAACCGGACCAAAAG-TGACGG
* **
32646641 TAGCGGGACCGACAGCACGCAGAGGGGGAT
129 TAGCAGGACCGACAGCACGCAG-GGGAAAT
* * * * * *
32646671 C-AGGCCGATCCCTGACTTGCGCATTATGCCTCTCCGACGGCTTAACGCCCGTACGCTCATTTTG
1 CGA-GCCGATCCCCGACTTACGCATTATGCCTCTCCGACGGCTGAGCGCCCGCACGCTCATTTCG
* * * *** *
32646735 TGAGTTGACTTAGGCATACGAAGTTCATTCC-TAGTCTAAGATTAAACCGTACCAAAAGTGACGG
65 TGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCCCAAACCGGACCAAAAGTGACGG
*
32646799 TAGCAGGATCGACAGCACGCAGGGGAAAT
129 TAGCAGGACCGACAGCACGCAGGGGAAAT
* * * * * *
32646828 CGAGCCGATCCCCGGCTTATGCATTCTGCCTCTCCAACCGGCTGAGCGCTCGCACGCTCGTTTCG
1 CGAGCCGATCCCCGACTTACGCATTATGCCTCTCCGA-CGGCTGAGCGCCCGCACGCTCATTTCG
32646893 TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
65 TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
32646934 ATATGGAGTT
Statistics
Matches: 211, Mismatches: 46, Indels: 13
0.78 0.17 0.05
Matches are distributed among these distances:
157 37 0.18
158 143 0.68
159 31 0.15
ACGTcount: A:0.21, C:0.29, G:0.27, T:0.23
Consensus pattern (157 bp):
CGAGCCGATCCCCGACTTACGCATTATGCCTCTCCGACGGCTGAGCGCCCGCACGCTCATTTCGT
GGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAAACCGGACCAAAAGTGACGGTA
GCAGGACCGACAGCACGCAGGGGAAAT
Found at i:32646942 original size:26 final size:26
Alignment explanation
Indices: 32646906--32646958 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32646896 GTTGGCTTAG
32646906 GCATACGGAGTTCA-TTCCATGTCTAA
1 GCATACGGAGTTCATTTCCA-GTCTAA
*
32646932 GCATATGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTTCCAGTCTAA
32646958 G
1 G
32646959 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTTCCAGTCTAA
Found at i:32647136 original size:197 final size:196
Alignment explanation
Indices: 32646802--32647314 Score: 575
Period size: 197 Copynumber: 2.7 Consensus size: 196
32646792 GTGACGGTAG
*
32646802 CAGGATCGACAGCACGCAGGGGAAATCGAGCCGATCCCCGGCTTATGCATTCTGCCTCTCCAACC
1 CAGGATCGACAGCACGCAGGGGAAATCGAGCCGATCCCCGGCTTATGCATTCTACCTCTCCAACC
* * * *
32646867 GGCTGAGCGCTCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
66 GGCTGAACGATCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCATGTCTAA
*
32646932 GCATATGGAGTTCATTTCCAGTCTAAGATCAGACCGGACCAAGGGTTACGATAGTAGGACCAACA
131 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTACGATAGTAGGACCAACA
32646997 A
196 A
** * * * *
32646998 CAGGATCGACAGCACGCAGGGAGGGATCGGGTCGATCCCCGGCTTGTGCATTCTACCTCTCCGAC
1 CAGGATCGACAGCACGCAGGG-GAAATCGAGCCGATCCCCGGCTTATGCATTCTACCTCTCCAAC
*
32647063 CGGCTGAATGATCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCT
65 CGGCTGAACGATCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT-CCCATGTCT
* * * * * *
32647127 AAGCATATGGAGTTCATTCCCAGTCTAAGATCAAACCAGATCGAGGGTTGCGGTAGTA-G-----
129 AAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTACGATAGTAGGACCAA
32647186 ---
194 CAA
* ** * ** * * **
32647186 -A--ATCGGCAGCACGCAGGGGGGATCGAGCCGATCCCCGACTTACACATTTTGCCTCTCCGGCC
1 CAGGATCGACAGCACGCAGGGGAAATCGAGCCGATCCCCGGCTTATGCATTCTACCTCTCCAACC
* * ** * * * * *
32647248 AGCTGAGCGCCCGCACACACGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
66 GGCTGAACGATCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCATGTCTAA
32647313 GC
131 GC
32647315 CCCAGCCAGA
Statistics
Matches: 275, Mismatches: 39, Indels: 18
0.83 0.12 0.05
Matches are distributed among these distances:
183 3 0.01
184 88 0.32
185 16 0.06
187 1 0.00
196 22 0.08
197 142 0.52
198 3 0.01
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.23
Consensus pattern (196 bp):
CAGGATCGACAGCACGCAGGGGAAATCGAGCCGATCCCCGGCTTATGCATTCTACCTCTCCAACC
GGCTGAACGATCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCATGTCTAA
GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTACGATAGTAGGACCAACA
A
Found at i:32647139 original size:26 final size:26
Alignment explanation
Indices: 32647103--32647155 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
32647093 GTTGACTTAG
32647103 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
32647129 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
32647155 G
1 G
32647156 ATCAAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:32648203 original size:26 final size:26
Alignment explanation
Indices: 32648165--32648242 Score: 113
Period size: 26 Copynumber: 3.0 Consensus size: 26
32648155 GGTTGACTTT
32648165 GGCATA-CAGAGTTCATCCCCAGTCTA
1 GGCATACCA-AGTTCATCCCCAGTCTA
*
32648191 GGCATACCAAGTTCATCCTCAGTCTA
1 GGCATACCAAGTTCATCCCCAGTCTA
* *
32648217 AGCATACCAAGTTCATTCCCAGTCTA
1 GGCATACCAAGTTCATCCCCAGTCTA
32648243 AGATTAGACC
Statistics
Matches: 47, Mismatches: 4, Indels: 2
0.89 0.08 0.04
Matches are distributed among these distances:
26 45 0.96
27 2 0.04
ACGTcount: A:0.28, C:0.31, G:0.15, T:0.26
Consensus pattern (26 bp):
GGCATACCAAGTTCATCCCCAGTCTA
Found at i:32648745 original size:26 final size:26
Alignment explanation
Indices: 32648693--32648745 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
32648683 GTTGGCTTAG
* *
32648693 GCATACGGAGTTCATTCCATTTTTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
32648719 GCATATGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
32648745 G
1 G
32648746 ATTGGACTGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.34
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:32649096 original size:26 final size:26
Alignment explanation
Indices: 32649059--32649111 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
32649049 GTTGACTTAG
*
32649059 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
32649085 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
32649111 G
1 G
32649112 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:32649384 original size:159 final size:158
Alignment explanation
Indices: 32649178--32649571 Score: 405
Period size: 159 Copynumber: 2.5 Consensus size: 158
32649168 CGACCCTCGG
* ** * *
32649178 CTTGCGCATTCTACCTCTCCGGTCGGCTAAGCGATCGCACGCCCGTTTCATGGGTTGGCTTAGGC
1 CTTGCGCATTCTGCCTCTCCGGTCGGCTAAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGC
* * * ** * * * **
32649243 TTAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCGGACCGAGGCTTGTGGTAGCGGGACCGACA
66 ATACGGAGTTCATTCCCA-GTCTAAG-ACCAGACCAAACCAAGGCTTGCGGCAGCAAGACCGACA
* * * *
32649306 GCACGCAGAGGGGGATCGGGTCGATCCCTGA
129 GCACGCAG-GGGGAATCAGGCCGATCCCAGA
* * * * * * **
32649337 CTTGCGCATTATGCCTCTCCGATCGGCTCAGTGCCCGAACGCTCGTTTTGTGGGTTGGCTTACAC
1 CTTGCGCATTCTGCCTCTCCGGTCGGCTAAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGC
* * * * * *
32649402 ATACGGAGTTCTTTCCCAGTCTAAGATCGGATCAAACCAAGGGTTGCGGCAGCAAGATCGACAGC
66 ATACGGAGTTCATTCCCAGTCTAAGACCAGACCAAACCAAGGCTTGCGGCAGCAAGACCGACAGC
*
32649467 ACGCAGGGGGAATCAGGCCGATCCCAGG
131 ACGCAGGGGGAATCAGGCCGATCCCAGA
* * * *
32649495 CTTACGCATTCTGCCTCTTCGGTCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGC
1 CTTGCGCATTCTGCCTCTCCGGTCGGCTAAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGC
32649560 ATACGGAGTTCA
66 ATACGGAGTTCA
32649572 ATCTTTGTCT
Statistics
Matches: 187, Mismatches: 46, Indels: 5
0.79 0.19 0.02
Matches are distributed among these distances:
158 84 0.45
159 100 0.53
160 3 0.02
ACGTcount: A:0.18, C:0.29, G:0.30, T:0.23
Consensus pattern (158 bp):
CTTGCGCATTCTGCCTCTCCGGTCGGCTAAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGC
ATACGGAGTTCATTCCCAGTCTAAGACCAGACCAAACCAAGGCTTGCGGCAGCAAGACCGACAGC
ACGCAGGGGGAATCAGGCCGATCCCAGA
Found at i:32649607 original size:26 final size:26
Alignment explanation
Indices: 32649560--32649610 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
32649550 TGGCTTAGGC
***
32649560 ATACGGAGTTCAATCTTTGTCTAAGT
1 ATACGGAGTTCAATCCCAGTCTAAGT
*
32649586 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCAATCCCAGTCTAAG
32649611 ATGGGATCGG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.33
Consensus pattern (26 bp):
ATACGGAGTTCAATCCCAGTCTAAGT
Found at i:32650147 original size:26 final size:26
Alignment explanation
Indices: 32650111--32650163 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
32650101 GTTGGCTTAG
32650111 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
32650137 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
32650163 G
1 G
32650164 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:32650314 original size:26 final size:26
Alignment explanation
Indices: 32650278--32650330 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
32650268 GTTGACTTAG
*
32650278 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACAGAGTTCATCCCTAGTCTAA
*
32650304 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCTAGTCTAA
32650330 G
1 G
32650331 ATCGGACTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCTAGTCTAA
Found at i:32651189 original size:26 final size:26
Alignment explanation
Indices: 32651160--32651212 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
32651150 GTTGACTTAG
* *
32651160 GCATAC-GAAGTTCATTCGCAGTCTAA
1 GCATACAG-AGTTCATTCCCAGCCTAA
32651186 GCATACAGAGTTCATTCCCAGCCTAA
1 GCATACAGAGTTCATTCCCAGCCTAA
32651212 G
1 G
32651213 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGCCTAA
Found at i:32651665 original size:158 final size:160
Alignment explanation
Indices: 32651307--32651684 Score: 401
Period size: 158 Copynumber: 2.4 Consensus size: 160
32651297 CTCCGGCCAG
* * *
32651307 CTGAGCGCCCGTACGC-CTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAA
1 CTGAGCACCCATACGCTC-GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCATGTCTAA
* * * * * * ** *
32651370 GCCCCAGTCGAACTGAGGGTTGTGGTAGCACGACCGACAGCACACAGAGGGTGATCGGGCCGATC
65 GCACCAGTCGAACCGAGGGTTATGGCAGCACGACCGACAGCACACAGAGGGGGACCAAGCCAATC
* * * *
32651435 CCCGACTTGCGCATTTTGCCTCTTCGGCTGA
130 CACGACTTGCACATTCTGCCTCTCCGGCTGA
* * * ** * * *
32651466 CTCAACACCCTTACGCTCGTTTAATGGGTTGACTTATGCATACGAAGTTCATTCCCA-GTCTAAG
1 CTGAGCACCCATACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCATGTCTAAG
* * * * * *
32651530 -ATCAGATTGGACCGAGGGTTATGGCAGCAGGATCGACAGCACTCAG-GGGGGACCAAGCCAATC
66 CACCAG-TCGAACCGAGGGTTATGGCAGCACGACCGACAGCACACAGAGGGGGACCAAGCCAATC
*
32651593 CACGGCTTGCACATTCTGCCTCTCCGG-TCGA
130 CACGACTTGCACATTCTGCCTCTCCGGCT-GA
32651624 CTGAGCACCCATACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCT
1 CTGAGCACCCATACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCATGTCT
32651685 TACCATACGG
Statistics
Matches: 176, Mismatches: 38, Indels: 11
0.78 0.17 0.05
Matches are distributed among these distances:
157 4 0.02
158 88 0.50
159 80 0.45
160 4 0.02
ACGTcount: A:0.20, C:0.28, G:0.28, T:0.25
Consensus pattern (160 bp):
CTGAGCACCCATACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCATGTCTAAG
CACCAGTCGAACCGAGGGTTATGGCAGCACGACCGACAGCACACAGAGGGGGACCAAGCCAATCC
ACGACTTGCACATTCTGCCTCTCCGGCTGA
Found at i:32651693 original size:26 final size:26
Alignment explanation
Indices: 32651662--32651729 Score: 93
Period size: 26 Copynumber: 2.7 Consensus size: 26
32651652 TTGGCTTAGG
* *
32651662 CATACGGAGTTCATTCCATGTCTTAC
1 CATACGGAGTTCATTCCATATCTAAC
*
32651688 CATACGGAGTTCATTCCATATCTAAG
1 CATACGGAGTTCATTCCATATCTAAC
*
32651714 CATACAG-GTTCATTCC
1 CATACGGAGTTCATTCC
32651730 CAGTCTAAGA
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
25 9 0.24
26 29 0.76
ACGTcount: A:0.26, C:0.26, G:0.15, T:0.32
Consensus pattern (26 bp):
CATACGGAGTTCATTCCATATCTAAC
Found at i:32652557 original size:8 final size:8
Alignment explanation
Indices: 32652544--32652574 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
32652534 GCCGGCTGAG
32652544 CGCCCGTA
1 CGCCCGTA
*
32652552 CGCCCGTT
1 CGCCCGTA
32652560 CGCCCGTA
1 CGCCCGTA
32652568 CGCCCGT
1 CGCCCGT
32652575 TTCGTGGGTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.06, C:0.52, G:0.26, T:0.16
Consensus pattern (8 bp):
CGCCCGTA
Found at i:32652565 original size:16 final size:16
Alignment explanation
Indices: 32652544--32652575 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
32652534 GCCGGCTGAG
32652544 CGCCCGTACGCCCGTT
1 CGCCCGTACGCCCGTT
32652560 CGCCCGTACGCCCGTT
1 CGCCCGTACGCCCGTT
32652576 TCGTGGGTTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.06, C:0.50, G:0.25, T:0.19
Consensus pattern (16 bp):
CGCCCGTACGCCCGTT
Found at i:32652864 original size:159 final size:159
Alignment explanation
Indices: 32652572--32652938 Score: 373
Period size: 159 Copynumber: 2.3 Consensus size: 159
32652562 CCCGTACGCC
* * * *
32652572 CGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGG
1 CGTTTCGTGGGTTGGCTTAGGAATACGGAGTTCATTCCATGTCTAAGCACCAGCCGGACCAAGGG
** * * *
32652637 TTGTGGCAGCGGGATCGACAGCACGCAGAAAGAGACCGGACCGATCCCCAGCTTGTGCGTTATGC
66 TTGTGGCAGCAAGATCGACAGCACGCAGAAAGAGACCGGACCGATCCCCAGCTTGCGCATTATAC
32652702 CTCTCCGGTTGGCTCAGCACCCGCACATT
131 CTCTCCGGTTGGCTCAGCACCCGCACATT
*
32652731 CGTTTCGTGGGTTGAG-TTAGGAATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCAA
1 CGTTTCGTGGGTTG-GCTTAGGAATACGGAGTTCATT-CCATGTCTAAGCACCAG-CCGGACCAA
* ** * * * * *
32652793 GGGTTGTGGCAGCAAGATCGACAGCACGTAGGGAGGGACCGGGA-TGGTCCTCGGCTTGCGCATT
63 GGGTTGTGGCAGCAAGATCGACAGCACGCAGAAAGAGACC-GGACCGATCCCCAGCTTGCGCATT
* *** * * * ***
32652857 CTACCTCTCCGACCGGCTAAACGCCCGCATGCT
127 ATACCTCTCCGGTTGGCTCAGCACCCGCACATT
* * * **
32652890 CGTTTCCTAGGTTGGCTTAGGCATATAGAGTTCATTCCATGTCTAAGCA
1 CGTTTCGTGGGTTGGCTTAGGAATACGGAGTTCATTCCATGTCTAAGCA
32652939 TATAGAGTTC
Statistics
Matches: 168, Mismatches: 33, Indels: 13
0.79 0.15 0.06
Matches are distributed among these distances:
158 7 0.04
159 153 0.91
160 8 0.05
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (159 bp):
CGTTTCGTGGGTTGGCTTAGGAATACGGAGTTCATTCCATGTCTAAGCACCAGCCGGACCAAGGG
TTGTGGCAGCAAGATCGACAGCACGCAGAAAGAGACCGGACCGATCCCCAGCTTGCGCATTATAC
CTCTCCGGTTGGCTCAGCACCCGCACATT
Found at i:32652939 original size:26 final size:26
Alignment explanation
Indices: 32652910--32652962 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
32652900 GTTGGCTTAG
32652910 GCATATAGAGTTCATT-CCATGTCTAA
1 GCATATAGAGTTCATTCCCA-GTCTAA
32652936 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATATAGAGTTCATTCCCAGTCTAA
32652962 G
1 G
32652963 ATCGGATTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.32
Consensus pattern (26 bp):
GCATATAGAGTTCATTCCCAGTCTAA
Found at i:32653686 original size:159 final size:156
Alignment explanation
Indices: 32653302--32653806 Score: 412
Period size: 158 Copynumber: 3.2 Consensus size: 156
32653292 CCCAGTCTAA
* * * * *
32653302 GCATATGGAGTTCATTCCTAGTCTAAGATCGGACCGGACCGAGGGTTGCGATAGTAAGATCGATA
1 GCATATGGAGTTCATTCC-AGTCTAAGATCAGACCAGACCGAGGGTTGCG-TAGCAGGATCGACA
* * * *
32653367 GCACGTAGGGGGGACCGAGCCGATCCCAAGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCACC
64 GCACGCAGGGGGGACCAAGCCGATCCCAAGCTTGCGCATTATGCCTCTCCGGCCGACTCAGCACC
**
32653432 CGCACGTCCGTTTCATTTGTTGGCTTAG
129 CGCACGTCCGTTTCATGGGTTGGCTTAG
* * * * * * * * * *
32653460 GCATAGGGAGTTCATTCCAATATTAAGCCTCA-ACCAGACCAAGGGTTGTGGCAGCGGGACCGGC
1 GCATATGGAGTTCATTCCAGT-CTAAG-ATCAGACCAGACCGAGGGTTG-CGTAGCAGGATCGAC
* * **
32653524 AGCACGCAGAGGGGGACCAAGCTGAT-CCATGGCTTGCGCATTATGCCTCTTTGGCCTG-CTCAG
63 AGCACGCAG-GGGGGACCAAGCCGATCCCA-AGCTTGCGCATTATGCCTCTCCGGCC-GACTCAG
* * *
32653587 CGCCCGCACG-CTCGTTTCGTGGGTTGAG-TTAT
125 CACCCGCACGTC-CGTTTCATGGGTTG-GCTTAG
*
32653619 GCATATAGAGTTCATTTCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGTAGCAGGATCGACA
1 GCATATGGAGTTCA-TTCCAGTCTAAGATCAGACCAGACCGAGGGTTGC-GTAGCAGGATCGACA
* ** * * * * * ** * *
32653684 GCATGCAGGGGGGACCGGGCCAATCCC-CGACTTGCGTATTCTGCCTCTCCGGCTGGTTGAGCGC
64 GCACGCAGGGGGGACCAAGCCGATCCCAAG-CTTGCGCATTATGCCTCTCCGGCCGACTCAGCAC
* * * *
32653748 CCGCACG-CTTGTTCCGTGGGATGGCTTAG
128 CCGCACGTC-CGTTTCATGGGTTGGCTTAG
*
32653777 GCATACGGAGTTCATTCCATGTCTAAGATC
1 GCATATGGAGTTCATTCCA-GTCTAAGATC
32653807 CCGGAGTTCA
Statistics
Matches: 273, Mismatches: 58, Indels: 32
0.75 0.16 0.09
Matches are distributed among these distances:
157 10 0.04
158 138 0.51
159 117 0.43
160 8 0.03
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (156 bp):
GCATATGGAGTTCATTCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGTAGCAGGATCGACAGC
ACGCAGGGGGGACCAAGCCGATCCCAAGCTTGCGCATTATGCCTCTCCGGCCGACTCAGCACCCG
CACGTCCGTTTCATGGGTTGGCTTAG
Found at i:32654533 original size:26 final size:26
Alignment explanation
Indices: 32654497--32654548 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
32654487 GTTGACTTAG
*
32654497 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
32654523 GCATGCGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
32654549 TATCAGATCG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:32655027 original size:26 final size:26
Alignment explanation
Indices: 32654997--32655047 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
32654987 TGGCTTAGGT
32654997 ATACGAAGTTCATT-CCATGTCTAAGC
1 ATACGAAGTTCATTCCCA-GTCTAAGC
*
32655023 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGAAGTTCATTCCCAGTCTAAG
32655048 ATTTTGAGCC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (26 bp):
ATACGAAGTTCATTCCCAGTCTAAGC
Found at i:32661473 original size:26 final size:26
Alignment explanation
Indices: 32661443--32661495 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
32661433 GTTGACTTAG
32661443 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
*
32661469 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
32661495 G
1 G
32661496 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATATGGAGTTCATCCCCAGTCTAA
Found at i:32662006 original size:26 final size:26
Alignment explanation
Indices: 32661970--32662022 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
32661960 GTTGACTTAG
*
32661970 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
32661996 GCATACGGAGTTGATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
32662022 G
1 G
32662023 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:32662674 original size:26 final size:26
Alignment explanation
Indices: 32662624--32662676 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
32662614 GTTCACTTAG
* *
32662624 GCATATAGAGTTCATCCCTAGTCTAA
1 GCATACAGAGTTCATCCCTACTCTAA
32662650 GCATACAGAGTTCATTCCC-ACTCTAA
1 GCATACAGAGTTCA-TCCCTACTCTAA
32662676 G
1 G
32662677 ATCAGATTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCTACTCTAA
Found at i:32663012 original size:159 final size:158
Alignment explanation
Indices: 32662650--32663019 Score: 366
Period size: 159 Copynumber: 2.3 Consensus size: 158
32662640 CCTAGTCTAA
* * * * * * **
32662650 GCATACAGAGTTCATTCCCACTCTAAGATCAGATTGAACTGAGGGTTGCGGTAGTAGGATTGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGAACTGAGGGTTGCGGCAGCAGGATCGACA
* ** * * * *
32662715 GCACGCAGGGGGGACCGAGTCGATCCCCAGCTTGCGCATTCTACCTCTCCGACCAATTGAGTGCT
66 GCACGCAGGGGGGACCGAGCCGATCCCCAGCTTGCGCATGATACCTCTCCGACCAACTCAGCGCC
* * * *
32662780 CGCACGCCCATTTTGTGGGTTGGCTTAG
131 CGCACACCCATTTCGTGGGTTGACTTAC
* * ** * * * *
32662808 GCATAGGGAGTTCATTCCCTGTCTAAGCCCCA-TCT-AGACCGAGGGTTGTGGCAGCGGGATCGA
1 GCATACGGAGTTCATTCCCAGTCTAAG-ATCAGACTGA-ACTGAGGGTTGCGGCAGCAGGATCGA
* * * ** * *
32662871 CAGCACGTAGAGGGGGACCGGGCCGATCCCCAGCTTGCGCATGATGCCTCTTTGGCCAGCTCAGC
64 CAGCACGCAG-GGGGGACCGAGCCGATCCCCAGCTTGCGCATGATACCTCTCCGACCAACTCAGC
* *
32662936 GCCCGTACACTCATTTCGTGGGTTGACTTAC
128 GCCCGCACACCCATTTCGTGGGTTGACTTAC
*
32662967 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGAACTGAGGGTTGCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGAACTGAGGGTTGCGGCA
32663020 ATAGAAATAA
Statistics
Matches: 163, Mismatches: 44, Indels: 9
0.75 0.20 0.04
Matches are distributed among these distances:
157 1 0.01
158 52 0.32
159 109 0.67
160 1 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGAACTGAGGGTTGCGGCAGCAGGATCGACA
GCACGCAGGGGGGACCGAGCCGATCCCCAGCTTGCGCATGATACCTCTCCGACCAACTCAGCGCC
CGCACACCCATTTCGTGGGTTGACTTAC
Found at i:32663175 original size:26 final size:26
Alignment explanation
Indices: 32663125--32663177 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
32663115 GTTGTCTTAG
* *
32663125 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATATCTAA
32663151 GCATACAGAGTTCATTCCCA-ATCTAA
1 GCATACAGAGTTCATT-CCATATCTAA
32663177 G
1 G
32663178 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Found at i:32663384 original size:13 final size:12
Alignment explanation
Indices: 32663351--32663386 Score: 54
Period size: 12 Copynumber: 2.9 Consensus size: 12
32663341 ATGCTGGTAC
*
32663351 TTGGCCCTTATA
1 TTGGCCCCTATA
32663363 TTGGCCCCTATA
1 TTGGCCCCTATA
32663375 TTGGCTCCCTAT
1 TTGGC-CCCTAT
32663387 CCCTCATCAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
12 16 0.73
13 6 0.27
ACGTcount: A:0.14, C:0.31, G:0.17, T:0.39
Consensus pattern (12 bp):
TTGGCCCCTATA
Found at i:32663907 original size:25 final size:26
Alignment explanation
Indices: 32663872--32663920 Score: 75
Period size: 25 Copynumber: 1.9 Consensus size: 26
32663862 ACTTAGGCAT
32663872 ACGGAAGTTCA-TCCCTAGTCTAAGCA
1 ACGGAAGTTCATTCCC-AGTCTAAGCA
32663898 ACGG-AGTTCATTCCCAGTCTAAG
1 ACGGAAGTTCATTCCCAGTCTAAG
32663921 ATCACCGATC
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
25 14 0.64
26 8 0.36
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (26 bp):
ACGGAAGTTCATTCCCAGTCTAAGCA
Found at i:32664258 original size:26 final size:26
Alignment explanation
Indices: 32664209--32664260 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
32664199 TTGGCTTAGA
*
32664209 CATACGGAGTTCATTCCATGTCTAAG
1 CATACGGAGTTCATTCCATATCTAAG
*
32664235 CATATGGAGTTCATTCCCA-ATCTAAG
1 CATACGGAGTTCATT-CCATATCTAAG
32664261 ATTTTGAGCC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (26 bp):
CATACGGAGTTCATTCCATATCTAAG
Found at i:32664350 original size:19 final size:19
Alignment explanation
Indices: 32664326--32664366 Score: 73
Period size: 19 Copynumber: 2.2 Consensus size: 19
32664316 TTAGGCATAC
32664326 AGAGTTCATCCCCAGTCTA
1 AGAGTTCATCCCCAGTCTA
*
32664345 AGAGTTCATTCCCAGTCTA
1 AGAGTTCATCCCCAGTCTA
32664364 AGA
1 AGA
32664367 TCAGATCGAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (19 bp):
AGAGTTCATCCCCAGTCTA
Found at i:32666024 original size:158 final size:157
Alignment explanation
Indices: 32665544--32666202 Score: 590
Period size: 158 Copynumber: 4.2 Consensus size: 157
32665534 TCTAGTCTAA
* * * * *
32665544 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCAAGGGTTGTGGCAGCAGGATCGATA
1 GCATACGGAGTTCATT-CCAGTCTAAGATCGGATCGGACCGAGGGTTGTGACAGCAGGATCGACA
* * * * *
32665609 GCATGCAGGGGGGACCGGGCCGATCCCCG-CTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCC
65 GCACGCAGAGGGGACCGGGCCGATCCCCGACTTACGCATTCTGCCTCTCCGACCGGCTGAACGAC
* ** * * *
32665673 CGCACGCCAGTTCCGTGGGTTGGCTTAA
130 TGCACGCTTGTTTCATGGGTTGGCTTAG
* * * ** * * * * *
32665701 GTATAGGGAGTTCATTCCATGTCTAAG-CCCTAACTGGATCGAGGGTTTTGGCAGCAGGATCGGC
1 GCATACGGAGTTCATTCCA-GTCTAAGATCGGATC-GGACCGAGGGTTGTGACAGCAGGATCGAC
* * ** * * * **
32665765 AGCACGCAGAGGGGGACCGGGCCGATCCCTGGCTTACGTGTTATGCCTCTTCGACTGGCTGAGTG
64 AGCACGCAGA-GGGGACCGGGCCGATCCCCGACTTACGCATTCTGCCTCTCCGACCGGCTGAACG
* * * * *
32665830 TCGGCACG-TTCATTTCATGGGTTGACTTAT
128 ACTGCACGCTT-GTTTCATGGGTTGGCTTAG
* * * * * *
32665860 GTATACGTAGTTTATTCTCAGTCTAAGATCGGATGGGACCGAGGGTTGCGACAACAGGATCGACA
1 GCATACGGAGTTCATTC-CAGTCTAAGATCGGATCGGACCGAGGGTTGTGACAGCAGGATCGACA
* * * * *
32665925 GCACGCAGAGGGGACCAGGTCGATCCCCGACTTACGCATTCTGCCTCTCCGGCCAGTTGAACGAC
65 GCACGCAGAGGGGACCGGGCCGATCCCCGACTTACGCATTCTGCCTCTCCGACCGGCTGAACGAC
32665990 TGCACGCTTGTTTCATGGGTTGGCTTAG
130 TGCACGCTTGTTTCATGGGTTGGCTTAG
* * * *
32666018 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACTGAGGGCTGTGACAGTAGGATCGGCA
1 GCATACGGAGTTCATT-CCAGTCTAAGATCGGATCGGACCGAGGGTTGTGACAGCAGGATCGACA
* * * * * * * * * **
32666083 GCGCGCAGGGGGGATCGGGTCGATCCTCGACTTGCGTATTCTGCCTTTTCGGTCGGCT-AA-GCA
65 GCACGCAGAGGGGACCGGGCCGATCCCCGACTTACGCATTCTGCCTCTCCGACCGGCTGAACG-A
*
32666146 CCTGCACGCTTGTTTCGTGGGTTGGCTTAG
129 -CTGCACGCTTGTTTCATGGGTTGGCTTAG
32666176 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCA-GTCTAAG
32666203 CCCTAGCTGG
Statistics
Matches: 405, Mismatches: 85, Indels: 23
0.79 0.17 0.04
Matches are distributed among these distances:
156 7 0.02
157 60 0.15
158 231 0.57
159 103 0.25
160 4 0.01
ACGTcount: A:0.19, C:0.25, G:0.31, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCGGATCGGACCGAGGGTTGTGACAGCAGGATCGACAG
CACGCAGAGGGGACCGGGCCGATCCCCGACTTACGCATTCTGCCTCTCCGACCGGCTGAACGACT
GCACGCTTGTTTCATGGGTTGGCTTAG
Found at i:32666202 original size:316 final size:315
Alignment explanation
Indices: 32665544--32666202 Score: 684
Period size: 316 Copynumber: 2.1 Consensus size: 315
32665534 TCTAGTCTAA
* * * * *
32665544 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCAAGGGTTGTGGCAGCAGGATCGATA
1 GCATACGGAGTTCATT-CCAGTCTAAGATCGGACCGGACCAAGGGTTGCGACAACAGGATCGACA
* * * * * * *
32665609 GCATGCAGGGGGGACCGGGCCGATCCCCGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCC
65 GCACGCAGAGGGGACCAGGCCGATCCCCGCTTACGCATTCTGCCTCTCCGACCAGCTGAACGACC
* * * *
32665674 GCACGCCAGTTCCGTGGGTTGGCTTAAGTATAGGGAGTTCATTCCATGTCTAAGCCCTAACTGGA
130 GCACGCCAGTTCCATGGGTTGGCTTAAGCATACGGAGTTCATTCCATGTCTAAGCCCGAACTGGA
* * * *
32665739 TCGAGGGTTTTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCGGGCCGATCCCTGGCTTACGT
195 TCGAGGGCTGTGACAGCAGGATCGGCAGCACGCAGAGGGGGACCGGGCCGATCCCTGACTTACGT
* * *** *
32665804 GTTATGCCTCTTCGACTGGCTGAGTGTCGGCACGTTCATTTCATGGGTTGACTTAT
260 ATTATGCCTCTTCGACTGGCTAAGCACCGGCACGTTCATTTCATGGGTTGACTTAG
* * * ** *
32665860 GTATACGTAGTTTATTCTCAGTCTAAGATCGGATGGGACCGAGGGTTGCGACAACAGGATCGACA
1 GCATACGGAGTTCATTC-CAGTCTAAGATCGGACCGGACCAAGGGTTGCGACAACAGGATCGACA
* * *
32665925 GCACGCAGAGGGGACCAGGTCGATCCCCGACTTACGCATTCTGCCTCTCCGGCCAGTTGAACGAC
65 GCACGCAGAGGGGACCAGGCCGATCCCCG-CTTACGCATTCTGCCTCTCCGACCAGCTGAACGAC
* ** * * ** *
32665990 TGCACGCTTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATCGGA-TC
129 CGCACGCCAGTTCCATGGGTTGGCTTAAGCATACGGAGTTCATT-CCATGTCTAAGCCCGAACT-
* * * *
32666053 GGA-CTGAGGGCTGTGACAGTAGGATCGGCAGCGCGCAG-GGGGGATCGGGTCGAT-CCTCGACT
192 GGATC-GAGGGCTGTGACAGCAGGATCGGCAGCACGCAGAGGGGGACCGGGCCGATCCCT-GACT
* * * * * * * *
32666115 TGCGTATTCTGCCTTTTCG-GTCGGCTAAGCACCTGCACGCTT-GTTTCGTGGGTTGGCTTAG
255 TACGTATTATGCCTCTTCGACT-GGCTAAGCACCGGCACG-TTCATTTCATGGGTTGACTTAG
32666176 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCA-GTCTAAG
32666203 CCCTAGCTGG
Statistics
Matches: 276, Mismatches: 58, Indels: 18
0.78 0.16 0.05
Matches are distributed among these distances:
315 7 0.03
316 159 0.58
317 107 0.39
318 3 0.01
ACGTcount: A:0.19, C:0.25, G:0.31, T:0.24
Consensus pattern (315 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGACAACAGGATCGACAG
CACGCAGAGGGGACCAGGCCGATCCCCGCTTACGCATTCTGCCTCTCCGACCAGCTGAACGACCG
CACGCCAGTTCCATGGGTTGGCTTAAGCATACGGAGTTCATTCCATGTCTAAGCCCGAACTGGAT
CGAGGGCTGTGACAGCAGGATCGGCAGCACGCAGAGGGGGACCGGGCCGATCCCTGACTTACGTA
TTATGCCTCTTCGACTGGCTAAGCACCGGCACGTTCATTTCATGGGTTGACTTAG
Found at i:32666376 original size:26 final size:26
Alignment explanation
Indices: 32666347--32666399 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32666337 GTTGACTTAG
*
32666347 GCATATGGAGTTCA-TCTCCAGTCTAA
1 GCATACGGAGTTCATTC-CCAGTCTAA
32666373 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
32666399 G
1 G
32666400 ATCGTTTCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:32666880 original size:26 final size:26
Alignment explanation
Indices: 32666841--32666896 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
32666831 TTTTATGGGT
* *
32666841 TAAGGATACGGAGTTCA-TCCCTAGTC
1 TAAGCATACAGAGTTCATTCCC-AGTC
32666867 TAAGCATACAGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTCATTCCCAGTC
32666893 TAAG
1 TAAG
32666897 ATCAGATTGG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
26 23 0.85
27 4 0.15
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.27
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATTCCCAGTC
Found at i:32667188 original size:160 final size:159
Alignment explanation
Indices: 32666954--32667373 Score: 517
Period size: 160 Copynumber: 2.6 Consensus size: 159
32666944 GGGATTGGGT
* * * * * *
32666954 CGATCCCCAGCTTGCGCATTCTGTCTCTCCGGTCGGCTGAGCGTCCGCACGCTCGTTTCATGGGT
1 CGATCCCCAGCTTGCGCATTCTGCCTTTCCGATCGGCTGAGCGCCCGCACGCTCATTTCGTGGGT
* * * *
32667019 TGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCAGACTGAGGGTTGTGGCAGC-
66 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCGAGGGTTGTGGCAGCA
*
32667082 GGAACCGACAGCACACAGAGAGAGATCGGGC
131 GG-ACCGACAGCACACAG-GAGAGATCGGAC
* * *
32667113 CGATCCCCCAGCTTGCGTATTATGCCTTTCCGATCGGCTCAGCGCCCGCACGCTCATTTCGTGGG
1 CGAT-CCCCAGCTTGCGCATTCTGCCTTTCCGATCGGCTGAGCGCCCGCACGCTCATTTCGTGGG
* *
32667178 TTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCAGACCGAGGGTTGTGGCAG
65 TTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCAGACCGAGGGTTGTGGCAG
* * * * *
32667241 CAGGATCGACAGCACGCAGGGGGGATCGGAT
129 CAGGACCGACAGCACACAGGAGAGATCGGAC
* * * * * *
32667272 AGGTACCCGGCTTACGCATTCTGCCTCTT-CGATTGGCTGAGCGCCCGCACGCTCATTTCGTGGG
1 CGATCCCCAGCTTGCGCATTCTGCCT-TTCCGATCGGCTGAGCGCCCGCACGCTCATTTCGTGGG
32667336 TTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
65 TTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
32667374 TATGGAGTTC
Statistics
Matches: 223, Mismatches: 31, Indels: 14
0.83 0.12 0.05
Matches are distributed among these distances:
157 3 0.01
158 81 0.36
159 20 0.09
160 114 0.51
161 5 0.02
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.24
Consensus pattern (159 bp):
CGATCCCCAGCTTGCGCATTCTGCCTTTCCGATCGGCTGAGCGCCCGCACGCTCATTTCGTGGGT
TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCGAGGGTTGTGGCAGCA
GGACCGACAGCACACAGGAGAGATCGGAC
Found at i:32667381 original size:26 final size:26
Alignment explanation
Indices: 32667345--32667397 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32667335 GTTGGCTTAG
32667345 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
32667371 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
32667397 G
1 G
32667398 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:32668051 original size:184 final size:183
Alignment explanation
Indices: 32667732--32668080 Score: 448
Period size: 184 Copynumber: 1.9 Consensus size: 183
32667722 GTTTATACCT
* * * * ** * *
32667732 GTCTAAGATCAAATCGGATCGAGGGTTGCAGCAGCAGGATTGATAGCATGTAGGGGGACCGGGCT
1 GTCTAAGATCAAATCAGACCGAGGGTTGCAGCAGCAGGATCGACAGCACATAGGGGGACCGAGCC
* * ** *
32667797 GATCCTCGGCTTGCATATTCTGTCTCTCTGATCGACTAAGTGCCCGTACCCTCATTTCATGGGTT
66 GATCCCCGGCTTGCACATTCTACCTCTCTGATCGACTAAGTGCCCGCACCCTCATTTCATGGGTT
32667862 GGCTTAGGCATATGGAGTTCATTACATGTCTAAGCATACGAAGTTCATTCCCA
131 GGCTTAGGCATATGGAGTTCATTACATGTCTAAGCATACGAAGTTCATTCCCA
* * * *
32667915 GTCTAAGATCGAATCAGACCGAGGGTTGCGGTAGCAGGATCGACAGCACATAGGGGGGACTGAGC
1 GTCTAAGATCAAATCAGACCGAGGGTTGCAGCAGCAGGATCGACAGCACATA-GGGGGACCGAGC
* * * * * * *
32667980 CGATCCCCGGCTTGCGCATTCTACCTCTCT-AGTTGGCTTAGTGCTCGCACGCTCATTTCGTGGG
65 CGATCCCCGGCTTGCACATTCTACCTCTCTGA-TCGACTAAGTGCCCGCACCCTCATTTCATGGG
*
32668044 TTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGC
129 TTGGCTTAGGCATATGGAGTTCATTACATGTCTAAGC
32668081 CCCAGTCAGA
Statistics
Matches: 139, Mismatches: 25, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
183 44 0.32
184 95 0.68
ACGTcount: A:0.21, C:0.23, G:0.28, T:0.27
Consensus pattern (183 bp):
GTCTAAGATCAAATCAGACCGAGGGTTGCAGCAGCAGGATCGACAGCACATAGGGGGACCGAGCC
GATCCCCGGCTTGCACATTCTACCTCTCTGATCGACTAAGTGCCCGCACCCTCATTTCATGGGTT
GGCTTAGGCATATGGAGTTCATTACATGTCTAAGCATACGAAGTTCATTCCCA
Found at i:32668248 original size:26 final size:26
Alignment explanation
Indices: 32668218--32668270 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
32668208 GTTGACTTAG
32668218 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
32668244 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
32668270 G
1 G
32668271 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:32668723 original size:158 final size:158
Alignment explanation
Indices: 32668244--32668745 Score: 512
Period size: 158 Copynumber: 3.2 Consensus size: 158
32668234 CCCAGTCTAA
* *
32668244 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCTGCAGCAGGATCTG-T
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGGCCGGACCGAGGGTTGCAGCAGCAGGATC-GAT
* ** *
32668308 AGCACAC-AAGGGGGATCGGGCTGTTCCCC-AGCTTGCACATTCTACCTCTCCAGCC-AGCTGAG
65 AGCAC-CTAAGGGGGATCGGGCTGATCCCCGA-CTTGTGCATTCTACCTCTCCGGCCGA-CTGAG
* *
32668370 CGCCCGCACACCCATTTCGTGGGTTGGCTTAG
127 CGCCCGCACGCTCATTTCGTGGGTTGGCTTAG
* * ** ** ** ** * * *
32668402 GCATAGGGAGTTCATT-CAATGTCTAAGCCCCAGTTGGACCGAGGGTTGTGGCAGTAGGATCAAC
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGGCCGGACCGAGGGTTGCAGCAGCAGGATCGAT
* * * * * * * ** * * *
32668466 AGCACGTAGAGGGGGATTGGGCCGATCCCCGACTTGTGCATTATGCCTTTTCGATCGGCTCAGCA
65 AGCACCTA-AGGGGGATCGGGCTGATCCCCGACTTGTGCATTCTACCTCTCCGGCCGACTGAGCG
* * *
32668531 CCAGCACGCTCATTTCGTGGGTTGACTTAT
129 CCCGCACGCTCATTTCGTGGGTTGGCTTAG
* *
32668561 GCATACGGAGTTCATTCCCAGTCCAAGATCGGGCCGGACCAAGGGTTGCAGCAGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGGCCGGACCGAGGGTTGCAGCAGCAGGATCGATA
* *
32668626 GCACCTAAGGGGGATCGAGCTGACCCCCGACTTGTGCATTCTACCTCTCCGGCCGACTGAGCGCC
66 GCACCTAAGGGGGATCGGGCTGATCCCCGACTTGTGCATTCTACCTCTCCGGCCGACTGAGCGCC
* *
32668691 CGCACGCTCGTTTCATGGGTTGGCTTAG
131 CGCACGCTCATTTCGTGGGTTGGCTTAG
*
32668719 GCATACGTAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
32668746 CATACGGAGT
Statistics
Matches: 265, Mismatches: 71, Indels: 16
0.75 0.20 0.05
Matches are distributed among these distances:
157 5 0.02
158 141 0.53
159 116 0.44
160 3 0.01
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGGCCGGACCGAGGGTTGCAGCAGCAGGATCGATA
GCACCTAAGGGGGATCGGGCTGATCCCCGACTTGTGCATTCTACCTCTCCGGCCGACTGAGCGCC
CGCACGCTCATTTCGTGGGTTGGCTTAG
Found at i:32668749 original size:26 final size:26
Alignment explanation
Indices: 32668719--32668771 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32668709 GTTGGCTTAG
*
32668719 GCATACGTAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
32668745 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
32668771 G
1 G
32668772 AATGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:32669116 original size:26 final size:26
Alignment explanation
Indices: 32669086--32669138 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
32669076 GTTGACATAG
*
32669086 GCATACGAAGTTTATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
32669112 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
32669138 G
1 G
32669139 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:32669609 original size:154 final size:155
Alignment explanation
Indices: 32669112--32669600 Score: 511
Period size: 159 Copynumber: 3.1 Consensus size: 155
32669102 CCCAGTCTAA
* *
32669112 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGTGGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGA-GGTT-T-GTAGCAGGATCGACA
** *
32669177 GCACGCAAGG-GGGACCGATCTGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCTC
63 GCACGCAAGGAGGGACCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCTC
* * *
32669241 TTGCATGCCCGTTTCGTGGGTTGGCTTAG
128 -CGCACGCTCGTTTCGTGGGTTGGCTTAG
* ** * * * * *
32669270 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCGGATCGAGGGTTGTGGCAGCGAGACCGG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCGAGGTTTGTAGCA--G-GATCGA
* * * * * * * *
32669333 TAGCATGCAAAGAGGGACCGGGTCGATCCCTAGCTTACGCATTATGCCTCTCCGACCGGCTCAGC
61 CAGCACGCAAGGAGGGACCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGC
**
32669398 GTCCGCACGCTCGTTTCGTGGGTTAACTTAG
126 -TCCGCACGCTCGTTTCGTGGGTTGGCTTAG
*
32669429 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGTTTAGTAGCAGGATCGACAGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGTTT-GTAGCAGGATCGACAGC
* * * ** *
32669494 ACGC-AGGAGGGACCGGGCCGGTCCCCGGCTTGCGCATTCTACCTCTCCGGTCGGTTGAGC-CCG
65 ACGCAAGGAGGGACCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCTCCG
* * *
32669557 CACACTCATTTCATGGGTTGGCTTAG
130 CACGCTCGTTTCGTGGGTTGGCTTAG
*
32669583 CCATACGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
32669601 ATTTCTAAGC
Statistics
Matches: 266, Mismatches: 55, Indels: 24
0.77 0.16 0.07
Matches are distributed among these distances:
154 41 0.15
155 5 0.02
156 45 0.17
157 17 0.06
158 45 0.17
159 103 0.39
160 10 0.04
ACGTcount: A:0.20, C:0.29, G:0.29, T:0.22
Consensus pattern (155 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGTTTGTAGCAGGATCGACAGCA
CGCAAGGAGGGACCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCTCCGC
ACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:32669633 original size:26 final size:26
Alignment explanation
Indices: 32669584--32669635 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
32669574 TTGGCTTAGC
* *
32669584 CATACGGAGTTCATTCCATTTCTAAG
1 CATACAGAGTTCATTCCATATCTAAG
32669610 CATACAGAGTTCATTCCCA-ATCTAAG
1 CATACAGAGTTCATT-CCATATCTAAG
32669636 ATCAGACAGA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.31, C:0.25, G:0.13, T:0.31
Consensus pattern (26 bp):
CATACAGAGTTCATTCCATATCTAAG
Found at i:32670007 original size:26 final size:26
Alignment explanation
Indices: 32669961--32670013 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
32669951 TTTGACTTAG
*
32669961 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCACCAGTCTAA
* *
32669987 GCATAC-GAAGTTCATTACCAGTGTAA
1 GCATACAG-AGTTCATCACCAGTCTAA
32670013 G
1 G
32670014 ATCGGATCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCACCAGTCTAA
Found at i:32670126 original size:863 final size:850
Alignment explanation
Indices: 32667641--32670505 Score: 2686
Period size: 863 Copynumber: 3.3 Consensus size: 850
32667631 GGATCAGGCT
* * * * * *
32667641 GATCCTCGGCTTACGCATTATGCCTCTCCGACCGGTTGAGCGTCCGCATGCTCGTTTCGCT-GGT
1 GATCCCCGACTTACGCATTATGCCTCTCCGACCGGCTCAGCGTCCGCACGCTCATTTCG-TGGGT
* * * * * * * *
32667705 CGATTTAGGCATACGGAGTTTA-TACCTGTCTAAGATCAAATCGGATCGAGGGTTGCAGCAGCAG
65 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCAG
* * * * * * * ** * *
32667769 GATTGATAGCATGTAGGGGGACCGGGCTGATCCTCGGCTTGCATATTCTGTCTCTCTGATCGACT
130 GATCGACAGCACGCAGGGGGACCGGGCCGATCCCCGGCTTGCACATTCTACCTCTCCGATCGGCT
* * * * *
32667834 AAGTGCCCGTACCCTCATTTCATGGGTTGGCTTAGGCATATGGAGTTCATTACATGTCTAAGCAT
195 --GAGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCAT
* * * * *
32667899 ACGAAGTTCATTCCCAGTCTAAGATCGAATCAGACCGAGGGTTGCGGTAGCA-G--G-A-T-CGA
258 ACGGAGTTCATTCCCAGTCTAAGATCG-ACCAGACCGAGGGTTGCAGCAGCAGGACGCAGTAGGA
* * * * *
32667958 -CA-G-CACATAGGGGGGACTGAGCCGATCCCCGGCTTGCGCATTCTACCTCTCTAGTTGGCTT-
322 TCAGGACACGTAGGGGGGAC-GAGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCAGTCGG-TTG
* * *
32668019 AGTGCTCGCACGCTCATTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCCCC
385 AGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCC
* * * * *
32668084 AGTCAGACTGAGGGTTGT--G--GTA--G-CAGGG-TCG-GCAG-AG-GGGGACCGGGTTAATCC
450 AGTCAGACCGATGGTTGTGGGCAGGACCGACAGGGATCGAGCAGTAGAGGGGACCAGGTTGATCC
* * * ** * *
32668138 CCAGCTTGTGCATTATGCCT-TTTCGACCGACCTTTTCGGTCGGT-TGAGCACTCGCAAACTCAT
515 CCAGCTTGTGCATTATGCCTCTCT-GATCG-CCTTTTC-GAC-GTCTGAGTGCACGC-ATCTCAT
*
32668201 TTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGT
575 TTCATGGGTTGACTTAGGCATAC-GAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGT
* * *
32668266 CTAAGATCGGACCGGACCGAGGGTTGCTGCAGCAGGATCTGTAGCACACAAGGGGGATCGGGCTG
639 CTAAGATCGGACCGGACCGAGGGTTGCAGCA-CAGCA-C-GTAG-------GGGGGACCGGGCTG
* * * * * *
32668331 TTCCCCAGCTTGCACATTCTACCTCTCCAGCCAGCTGAGCGCCCGCACACCCATTTCGTGGGTTG
694 ATCCCCAGCTTGCGCATTCTGCCTCTCCAACCAGCTGAGCACCCGCACACCCGTTTCGTGGGTTG
* ** *
32668396 GCTTAGGCATAGGGAGTTCATTCAATGTCTAAGCCCCAGTTGGACCGAGGGTTGTGGCAG-TAGG
759 GCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGA-CGAGGGTTGTGGCAGCGA-G
* *** **
32668460 ATCAACAGCACGTAGAGGGGGATTGGGCC
822 ACCGGTAGCACGTAGAGGGGGACCGGGCC
** * * * *
32668489 GATCCCCGACTTGTGCATTATGCCTTTTCGATCGGCTCAGC-ACCAGCACGCTCATTTCGTGGGT
1 GATCCCCGACTTACGCATTATGCCTCTCCGACCGGCTCAGCGTCC-GCACGCTCATTTCGTGGGT
* * * * *
32668553 TGACTTATGCATACGGAGTTCATTCCCAGTCCAAGATCGGGCCGGACCAAGGGTTGCAGCAGCAG
65 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCAG
* * * * * * ** ** *
32668618 GATCGATAGCAC-CTAAGGGGGATCGAGCTGACCCCCGACTTGTGCATTCTACCTCTCCGGCCGA
130 GATCGACAGCACGC--AGGGGGACCGGGCCGATCCCCGGCTTGCACATTCTACCTCTCCGATCGG
* *
32668682 CTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGTAGTTCATTCCATGTCTAAGC
193 CTGA--GCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
* * * * *
32668747 ATACGGAGTTCATTCCCAGTCTAAGAATGGACCGGACCAAGGGTTGCAGCAGTAGGACTAGCAGC
256 ATACGGAGTTCATTCCCAGTCTAAG-ATCGACCAGACCGAGGGTTGCAGCAGCAGGAC--GCAGT
* * * * ** ** * *
32668812 AGGATC-GGCAGATGCAGAGGGGGATCGAGCTGAACTTCGGCTTGCATATTCTGCCACTCCAATC
318 AGGATCAGG-ACACGTAG-GGGGGA-CGAGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCAGTC
* * *
32668876 GGTTGAGCGCCCGCACGCTCATTTTGTAGGTTGGCTTAGGCATACGGAGTTCATTCCACGTCTAA
380 GGTTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* * *
32668941 GCCCGAGTCAAACCG-TGGGTTGTGGTAGCAAGACCGACAGTGGGATCGATGACATGCT-GAAGG
445 GCCCCAGTCAGACCGAT-GGTTGTGG--GCAGGACCGACA--GGGATCGA-G-CA-G-TAG-AGG
* * *
32669004 GGACCAGGTTGATCCTCAGCTTGTGCATTATGCCTCTCTGGTCGGC---T-GAACGTC----TGC
500 GGACCAGGTTGATCCCCAGCTTGTGCATTATGCCTCTCTGATCGCCTTTTCG-ACGTCTGAGTGC
* *
32669061 ACGC-TCGT--TTT-ATGGGTTGACATAGGCATACGAAGTTTATCCCCAGTCTAAGCATACGAAG
564 ACGCATC-TCATTTCATGGGTTGACTTAGGCATACG-AGTTCATCCCCAGTCTAAGCATACGAAG
* * * *
32669122 TTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGTGGTAGCAGGATCGACAGCACGCAAGG
627 TTCATTCCCAGTCTAAGATCGGACCGGACCGA-GG--GT--T-GCA-G--C-ACAGCACGTAGGG
** * * * ** **
32669187 GGGACCGATCTGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCTCTTGCATGCCCG
682 GGGACCGGGCTGATCCCCAGCTTGCGCATTCTGCCTCTCCAACCAGCTGAGCACCCGCACACCCG
32669252 TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAGGGTT
747 TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGA-CGAGGGTT
* * * * *
32669317 GTGGCAGCGAGACCGGTAGCATGCAAAGAGGGACCGGGTC
811 GTGGCAGCGAGACCGGTAGCACGTAGAGGGGGACCGGGCC
* *
32669357 GAT-CCCTAGCTTACGCATTATGCCTCTCCGACCGGCTCAGCGTCCGCACGCTCGTTTCGTGGGT
1 GATCCCCGA-CTTACGCATTATGCCTCTCCGACCGGCTCAGCGTCCGCACGCTCATTTCGTGGGT
* * * *
32669421 TAACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGA-GGTT-TAGTAGCAG
65 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCAG
* * * *
32669484 GATCGACAGCACGCAGGAGGGACCGGGCCGGTCCCCGGCTTGCGCATTCTACCTCTCCGGTCGGT
130 GATCGACAGCACGCAGG-GGGACCGGGCCGATCCCCGGCTTGCACATTCTACCTCTCCGATCGGC
* * *
32669549 TGAGCCCGCACACTCATTTCATGGGTTGGCTTAGCCATACGGAGTTCATTCCATTTCTAAGCATA
194 TGAGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATA
* *
32669614 CAGAGTTCATTCCCAATCTAAGATCAGA-CAGACCGAGGGTTGCAGCAGCAGGACCCGCAGTAGG
259 CGGAGTTCATTCCCAGTCTAAGATC-GACCAGACCGAGGGTTGCAGCAGCAGGA--CGCAGTAGG
* * * *
32669678 ATCAGGAACACGTAGGGGGGACCAGATTGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGTT
321 ATCAGG-ACACGTAGGGGGGACGAG-CTGATCCCCGGCTTGCGCATTCTGCCTCTCCAGTCGGTT
* *
32669743 GAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAACCC
384 GAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCC
* * *
32669808 TAGTCGGACCGATGGTTGTGGCGGCAGGACCGACAGCAGGATCGACAGCACGTAGACGGGGATC-
449 CAGTCAGACCGATGGTTGT-G-GGCAGGACCGACAG--GGATCG--AGCA-GTAGA-GGGGACCA
** * * *
32669872 GACTGATCCCCAACTTGCGCATTATGCCTCTCTGATCAGCCTTTTCGACTGTCTGAGTGCCCGCA
506 GGTTGATCCCCAGCTTGTGCATTATGCCTCTCTGATC-GCCTTTTCGAC-GTCTGAGTGCACGCA
* *
32669937 TGCTCATTTCGTGGTTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGAAGTTCAT
569 T-CTCATTTCATGGGTTGACTTAGGCATAC-GAGTTCATCCCCAGTCTAAGCATACGAAGTTCAT
* * * * *
32670002 TACCAGTGTAAGATCGGATCGGATCGAGGGTTGC-GC-CAGCACGTAGGGGGGACCGGGCCGATC
632 TCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGCACAGCACGTAGGGGGGACCGGGCTGATC
* * * * * ** *
32670065 CTCGGCTTGCGCATTCTGGCACTCCAACCAACTGAGCACCCGCACACTTGTTTCATGGGTTGGCT
697 CCCAGCTTGCGCATTCTGCCTCTCCAACCAGCTGAGCACCCGCACACCCGTTTCGTGGGTTGGCT
* ** *
32670130 TAGGCATAGGGAGTTCATTCCCA-GTCAAAG-ATCAGACCGGACAGAGGGTTGTGGCAGCGGGAC
762 TAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCGGAC-GAGGGTTGTGGCAGCGAGAC
* *
32670193 TGGTAGCACGTAGAGGGGGACCAGGCC
824 CGGTAGCACGTAGAGGGGGACCGGGCC
* * * **
32670220 AATCCCCGACTTACGCATTATGCCTCTTCGACCGGCTCAGCG-CTTGCATACTCATTTCGTGGGT
1 GATCCCCGACTTACGCATTATGCCTCTCCGACCGGCTCAGCGTC-CGCACGCTCATTTCGTGGGT
* * *
32670284 TGACTTATGCATACGGAGTTCATTCCCAGTCAAAGATCAGACCGAACCGAGGGTTGCAGCAGCAG
65 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCAG
* * * *
32670349 GATCGACAGCACGCATGGGGGGATCAGGTCGATCCCCGGCTTGCACATTCTACCTCTTCGATCGG
130 GATCGACAGCACGCA--GGGGGACCGGGCCGATCCCCGGCTTGCACATTCTACCTCTCCGATCGG
* * * * *
32670414 CTGAGCACTCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTCCTTTCCATGTCTAAGC
193 CTGAGC-C-CGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
*
32670479 ATACGGAGTACATTCCCAGTCTAAGAT
256 ATACGGAGTTCATTCCCAGTCTAAGAT
32670506 TTTGAGCCAT
Statistics
Matches: 1627, Mismatches: 285, Indels: 190
0.77 0.14 0.09
Matches are distributed among these distances:
847 3 0.00
848 66 0.04
849 43 0.03
850 133 0.08
851 4 0.00
855 1 0.00
856 1 0.00
858 2 0.00
859 2 0.00
861 6 0.00
862 148 0.09
863 409 0.25
864 100 0.06
865 29 0.02
866 106 0.07
867 18 0.01
868 378 0.23
869 10 0.01
870 3 0.00
871 11 0.01
872 8 0.00
873 5 0.00
874 10 0.01
875 76 0.05
876 4 0.00
877 8 0.00
878 2 0.00
879 1 0.00
880 1 0.00
881 37 0.02
882 2 0.00
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (850 bp):
GATCCCCGACTTACGCATTATGCCTCTCCGACCGGCTCAGCGTCCGCACGCTCATTTCGTGGGTT
GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCAGG
ATCGACAGCACGCAGGGGGACCGGGCCGATCCCCGGCTTGCACATTCTACCTCTCCGATCGGCTG
AGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACG
GAGTTCATTCCCAGTCTAAGATCGACCAGACCGAGGGTTGCAGCAGCAGGACGCAGTAGGATCAG
GACACGTAGGGGGGACGAGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCAGTCGGTTGAGCGCC
CGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCAG
ACCGATGGTTGTGGGCAGGACCGACAGGGATCGAGCAGTAGAGGGGACCAGGTTGATCCCCAGCT
TGTGCATTATGCCTCTCTGATCGCCTTTTCGACGTCTGAGTGCACGCATCTCATTTCATGGGTTG
ACTTAGGCATACGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGAC
CGGACCGAGGGTTGCAGCACAGCACGTAGGGGGGACCGGGCTGATCCCCAGCTTGCGCATTCTGC
CTCTCCAACCAGCTGAGCACCCGCACACCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATT
CCATGTCTAAGCCCCAGCCGGACGAGGGTTGTGGCAGCGAGACCGGTAGCACGTAGAGGGGGACC
GGGCC
Found at i:32670337 original size:159 final size:159
Alignment explanation
Indices: 32670115--32670461 Score: 428
Period size: 159 Copynumber: 2.2 Consensus size: 159
32670105 CGCACACTTG
* * *
32670115 TTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCCAGTCAAAGATCAGACCGGACAGAGGGTT
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCAAAGATCAGACCGAACAGAGGGTT
** * ** * * *
32670180 GTGGCAGCGGGA-CTGGTAGCACGTA-GAGGGGGACCAGGCCAATCCCCGACTTACGCATTATGC
66 GCAGCAGCAGGATC-GACAGCACGCATG-GGGGGACCAGGCCAATCCCCGACTTACACATTATAC
* *
32670243 CTCTTCGACCGGCTCAGCGCTTGCATACTCA
129 CTCTTCGACCGGCTCAGCACTCGCATACTCA
* * *
32670274 TTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCAAAGATCAGACCGAACCGAGGGTT
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCAAAGATCAGACCGAACAGAGGGTT
* * * * * *
32670339 GCAGCAGCAGGATCGACAGCACGCATGGGGGGATCAGGTCGATCCCCGGCTTGCACATTCTACCT
66 GCAGCAGCAGGATCGACAGCACGCATGGGGGGACCAGGCCAATCCCCGACTTACACATTATACCT
* * * *
32670404 CTTCGATCGGCTGAGCACTCGCATGCTCG
131 CTTCGACCGGCTCAGCACTCGCATACTCA
32670433 TTTCGTGGGTTGGCTTAGGCATACGGAGT
1 TTTCGTGGGTTGGCTTAGGCATACGGAGT
32670462 CCTTTCCATG
Statistics
Matches: 158, Mismatches: 28, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
159 156 0.99
160 2 0.01
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.23
Consensus pattern (159 bp):
TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCAAAGATCAGACCGAACAGAGGGTT
GCAGCAGCAGGATCGACAGCACGCATGGGGGGACCAGGCCAATCCCCGACTTACACATTATACCT
CTTCGACCGGCTCAGCACTCGCATACTCA
Found at i:32670494 original size:26 final size:26
Alignment explanation
Indices: 32670451--32670503 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
32670441 GTTGGCTTAG
* *
32670451 GCATACGGAGT-CCTTTCCATGTCTAA
1 GCATACGGAGTACATTCCCA-GTCTAA
32670477 GCATACGGAGTACATTCCCAGTCTAA
1 GCATACGGAGTACATTCCCAGTCTAA
32670503 G
1 G
32670504 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 18 0.75
27 6 0.25
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTACATTCCCAGTCTAA
Found at i:32671208 original size:26 final size:26
Alignment explanation
Indices: 32671160--32671211 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
32671150 GTTGACTTAG
* *
32671160 GCATACGGAGTTCATCCCAAGTCTAA
1 GCATACGAAGTTCATCACAAGTCTAA
32671186 GCATACGAAGTTCATTCAC-AGTCTAA
1 GCATACGAAGTTCA-TCACAAGTCTAA
32671212 AATCAAATCA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCACAAGTCTAA
Done.