Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 357 of 402
Found at i:32671556 original size:26 final size:27
Alignment explanation
Indices: 32671503--32671556 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 27
32671493 GTTGACTTAG
*
32671503 GCATACGAAGTTCATTCCCCAGTCTAA
1 GCATACGAAGTTCAATCCCCAGTCTAA
*
32671530 GCATACGGAGTTCAAT-CCCAGTCTAA
1 GCATACGAAGTTCAATCCCCAGTCTAA
32671556 G
1 G
32671557 ATTGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 11 0.44
27 14 0.56
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.24
Consensus pattern (27 bp):
GCATACGAAGTTCAATCCCCAGTCTAA
Found at i:32671735 original size:344 final size:343
Alignment explanation
Indices: 32671135--32672534 Score: 1381
Period size: 344 Copynumber: 4.2 Consensus size: 343
32671125 GAGCGCCAGT
* * *
32671135 ACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCA-TCCCAAGTCTAAGCATACGAAGTTC
1 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCCAGTCTAAGCATACGGAGTTC
* * * * * * * *
32671199 ATTCACAGTCTAAAATCAAATCAGATCGAGTGTTGCGATAGCAGGATTGATAGCTCGTAGGGGAG
66 AATCCCAGTCTAAGATCAAATCAGATCGAGTGTTGTG-TAGCAGGATCGACAGCACGCAGGGGAG
* ** * * * * * * *
32671264 ACCAGATCGATCCTTGGCTTGCACATTCTACCTTTCCGGCCGGTTGAGTGCCCGCACGCCCGTTT
130 ACCGGGCCGATCCTCGGCTTACGCATTCTACCTCTCCGACCGGCTGAGTGCCCGCACGCCCATTT
* * * ** * *
32671329 CGTGCGTTGGCTTGGGCATAGGGGGTTCATTCCATGTCTAAGCCCCAGCCAAATCGAGGGTTGTG
195 CATGGGTTGGCTTGGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGAACCAAGGGTTGTG
* * * *
32671394 GCAACGGGACTGACAGCATGCAGAGGGGGATCGGGTCGATCCCCGGCTAGCGCATTATGCCTCTC
260 GCAGCGGGACCGACAGCACGCAGAGGGGGATCGGGCCGATCCCCGGCTAGCGCATTATGCCTCTC
* * *
32671459 CGGTCGGCTCAGCGCCCCC
325 CGGCCGGCTCAGTGCCCAC
* * *
32671478 ACGCTCATTTTGTGGGTTGACTTAGGCATACGAAGTTCATTCCCCAGTCTAAGCATACGGAGTTC
1 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCCAGTCTAAGCATACGGAGTTC
*** * * * * *
32671543 AATCCCAGTCTAAGATTGGATCAGACCAAGTGTTGTAGCAGCAGGATCGGCAGCACGTAGGGGCA
66 AATCCCAGTCTAAGATCAAATCAGATCGAGTGTTGT-GTAGCAGGATCGACAGCACGCAGGGG-A
* * ** *
32671608 -ACCGGGCCGATTCTTGGCTTGTGCATTCTGCCTCTCCGACCGGCTGAGTGCCCGCACGCCCATT
129 GACCGGGCCGATCCTCGGCTTACGCATTCTACCTCTCCGACCGGCTGAGTGCCCGCACGCCCATT
* *
32671672 TCATGGGTTGGCTTGGGCATAGGGAGTTCACTCCATGTCTAAGCCCTAGCTGAACCAAGGGTTGT
194 TCATGGGTTGGCTTGGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGAACCAAGGGTTGT
* ** * * ** * *
32671737 GGCAGCGGGATCGGTAGCACGTAGAGGGTGATCGGGTTGATCCCTGGCTTGCGCATTATGCCTCT
259 GGCAGCGGGACCGACAGCACGCAGAGGGGGATCGGGCCGATCCCCGGCTAGCGCATTATGCCTCT
* *
32671802 CTGGCCGGCTCAGTGCCCGC
324 CCGGCCGGCTCAGTGCCCAC
* * * * * * *
32671822 ACTCTCGTTTTGTAGGTTAATTTAGTCATACGGAGTTCATT-CCCATTCTAAG-AT-C--AG---
1 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCCAGTCTAAGCATACGGAGTTC
* *
32671879 -A---C---C--AGA-C----C-GA--G-G-GTTATGGTAGCAGGATCGACAGCACGCAGGGGGG
66 AATCCCAGTCTAAGATCAAATCAGATCGAGTGTTGT-GTAGCAGGATCGACAGCACGCAGGGGAG
* * * * * * * *
32671925 ACCGGGTCGATCCCCGACTTACGCATTCTACCTCTCTGACCGGCTAAGCGCCTGCACGTCCATTT
130 ACCGGGCCGATCCTCGGCTTACGCATTCTACCTCTCCGACCGGCTGAGTGCCCGCACGCCCATTT
* * *
32671990 CGTGGGTTGGCTTGGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACCGAGGGTTGTG
195 CATGGGTTGGCTTGGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGAACCAAGGGTTGTG
** * * * * *
32672055 GCAGCGGGACCGGTAGCACGCAAAGGGGAACCGGGCCGATCCCTGGCTAGCGCATTACGCCTCTC
260 GCAGCGGGACCGACAGCACGCAGAGGGGGATCGGGCCGATCCCCGGCTAGCGCATTATGCCTCTC
* * ** *
32672120 CGGCTGGCTCAATGCTGAT
325 CGGCCGGCTCAGTGCCCAC
* *
32672139 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCCAGTCTAAACATACAGAGTTC
1 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCCAGTCTAAGCATACGGAGTTC
* * * * * *
32672204 ATTCCCAGTTTAAGATCAAACCAGATCGAGTGTTGCGGTAACAGGATC-AGTAGCACGCAGGGGA
66 AATCCCAGTCTAAGATCAAATCAGATCGAGTGTTG-TGTAGCAGGATCGA-CAGCACGCAGGGGA
* * * * * * * *
32672268 GATCGGGCCGATCCTCGGCTTACGCATTCTGCCTCTCTGACCCGTTGAGTGCACACACGCCCGTT
129 GACCGGGCCGATCCTCGGCTTACGCATTCTACCTCTCCGACCGGCTGAGTGCCCGCACGCCCATT
* *
32672333 TCATGGGTTGGCTTGGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGC-CAGACCAAGGGCTG
194 TCATGGGTTGGCTTGGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGA-ACCAAGGGTTG
* * * * *
32672397 TGGTAGCAGGACCGACAGCACTCAGAGGGGGATCGGGCCAATCCCCTGCTTA-CGCATTATGCCT
258 TGGCAGCGGGACCGACAGCACGCAGAGGGGGATCGGGCCGATCCCCGGC-TAGCGCATTATGCCT
* * *
32672461 CTCCGACCGGTTCAATGCCCAC
322 CTCCGGCCGGCTCAGTGCCCAC
* *
32672483 ACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATT-CCTAGTCTAAG
1 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCCAGTCTAAG
32672535 ATCGGTTCAG
Statistics
Matches: 861, Mismatches: 161, Indels: 70
0.79 0.15 0.06
Matches are distributed among these distances:
317 241 0.28
318 10 0.01
319 2 0.00
320 1 0.00
321 2 0.00
322 3 0.00
327 3 0.00
329 2 0.00
332 1 0.00
334 3 0.00
335 2 0.00
339 3 0.00
340 2 0.00
341 1 0.00
342 3 0.00
343 56 0.07
344 522 0.61
345 4 0.00
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (343 bp):
ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCCAGTCTAAGCATACGGAGTTC
AATCCCAGTCTAAGATCAAATCAGATCGAGTGTTGTGTAGCAGGATCGACAGCACGCAGGGGAGA
CCGGGCCGATCCTCGGCTTACGCATTCTACCTCTCCGACCGGCTGAGTGCCCGCACGCCCATTTC
ATGGGTTGGCTTGGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGAACCAAGGGTTGTGG
CAGCGGGACCGACAGCACGCAGAGGGGGATCGGGCCGATCCCCGGCTAGCGCATTATGCCTCTCC
GGCCGGCTCAGTGCCCAC
Found at i:32672015 original size:158 final size:157
Alignment explanation
Indices: 32671530--32672181 Score: 487
Period size: 159 Copynumber: 4.1 Consensus size: 157
32671520 CCCAGTCTAA
* ** * *
32671530 GCATACGGAGTTCAATCCCA-GTCTAAGATTGGATCAGACCAAGTGTTGTAGCAGCAGGATCGGC
1 GCATACGGAGTTC-ATTCCATGTCTAAGATCAGA-CAGACCAAGGGTTGTGGCAGCAGGATCGGC
* * * * * * *
32671594 AGCACGTAGGGGCAACCGGGCCGATTCTTGGCTTGTGCATTCTGCCTCTCCGACCGGCTGAGTGC
64 AGCACGTAGGGGCGACCGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTCTGACCGGCTAAGTGC
* *
32671659 CCGCACGCCCATTTCATGGGTTGGCTTGG
129 CCGCACGTCCATTTCGTGGGTTGGCTTGG
* * ** * * *
32671688 GCATAGGGAGTTCACTCCATGTCTAAGCCCTAG-CTGAACCAAGGGTTGTGGCAGCGGGATCGGT
1 GCATACGGAGTTCATTCCATGTCTAAGATC-AGACAG-ACCAAGGGTTGTGGCAGCAGGATCGGC
* * * * * *
32671752 AGCACGTAGAGGGTGATCGGGTTGATCCCTGGCTTGCGCATTATGCCTCTCTGGCCGGCTCAGTG
64 AGCACGTAG-GGGCGACCGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTCTGACCGGCTAAGTG
* * * *** *
32671817 CCCGCAC-TCTCGTTTTGTAGGTTAATTTAG
128 CCCGCACGTC-CATTTCGTGGGTTGGCTTGG
* * * * *
32671847 TCATACGGAGTTCATTCCCAT-TCTAAGATCAGACCAGACCGAGGGTTATGGTAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGA-CAGACCAAGGGTTGTGGCAGCAGGATCGGC
* * * * * * *
32671911 AGCACGCAGGGGGGACCGGGTCGATCCCCGACTTACGCATTCTACCTCTCTGACCGGCTAAGCGC
64 AGCACGTAGGGGCGACCGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTCTGACCGGCTAAGTGC
*
32671976 CTGCACGTCCATTTCGTGGGTTGGCTTGG
129 CCGCACGTCCATTTCGTGGGTTGGCTTGG
* ** * * * * *
32672005 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CTGGACCGAGGGTTGTGGCAGCGGGACCGGT
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGAC-AGACCAAGGGTTGTGGCAGCAGGATCGGC
* * * * * * *
32672069 AGCACGCAAAGGGG-AACCGGGCCGATCCCTGGCTAGCGCATTAC-GCCTCTCCGGCTGGCTCAA
64 AGCACG--TAGGGGCGACCGGGTCGATCCCTGGCTTGCGCATT-CTGCCTCTCTGACCGGCT-AA
* * * * *
32672132 -TG-CTGATACG-CTCGTTTCGTGGGTTGACTTAG
125 GTGCCCG-CACGTC-CATTTCGTGGGTTGGCTTGG
32672164 GCATACGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
32672182 CCAGTCTAAA
Statistics
Matches: 383, Mismatches: 93, Indels: 35
0.75 0.18 0.07
Matches are distributed among these distances:
157 11 0.03
158 169 0.44
159 189 0.49
160 14 0.04
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACAGACCAAGGGTTGTGGCAGCAGGATCGGCAG
CACGTAGGGGCGACCGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTCTGACCGGCTAAGTGCCC
GCACGTCCATTTCGTGGGTTGGCTTGG
Found at i:32672110 original size:317 final size:316
Alignment explanation
Indices: 32671530--32673059 Score: 1089
Period size: 317 Copynumber: 4.7 Consensus size: 316
32671520 CCCAGTCTAA
* ** * * ** * *
32671530 GCATACGGAGTTCAATCCCAGTCTAAGATTGGATCAGACCAAGTGTTGTAGCAGCAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGTAGCAGGATCGACA
* ** * ** * ** * *
32671595 GCACGTAGGGGCAACCGGGCCGATTCTTGGCTTGTGCATTCTGCCTCTCCGACCGGCTGAGTGCC
66 GCACGCAGGGGGGACCGGGCCGATCCCCGACTTACGCATTCTGCCTCTCTGACCGGCTGAGCGCC
* * *
32671660 CGCACGCCCATTTCATGGGTTGGCTTGGGCATAGGGAGTTCACTCCATGTCTAAGCCCTAGCTGA
131 CGCACGCCCATTTCATGGGTTGGCTTGGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGG
* * ** *
32671725 ACCAAGGGTTGTGGCAGCGGGATCGGTAGCACGTAGAGGGTGATCGGGTTGATCCCTGGCTTGCG
196 ACCAAGGGTTGTGGCAGCGGGACCGGTAGCACGCAGAGGG-GATCGGGCCGATCCCTGGCTAGCG
* * * * * * *
32671790 CATTATGCCTCTCTGGCCGGCTCAGTGCCCGCACTCTCGTTTTGTAGGTTAATTTAG
260 CATTATGCCTCTCCGGCCGGCTCAATGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * **
32671847 TCATACGGAGTTCATTCCCATTCTAAGATCAGACCAGACCGAGGGTTATGGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGTAGCAGGATCGACA
* * *
32671912 GCACGCAGGGGGGACCGGGTCGATCCCCGACTTACGCATTCTACCTCTCTGACCGGCTAAGCGCC
66 GCACGCAGGGGGGACCGGGCCGATCCCCGACTTACGCATTCTGCCTCTCTGACCGGCTGAGCGCC
* * *
32671977 TGCACGTCCATTTCGTGGGTTGGCTTGGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGG
131 CGCACGCCCATTTCATGGGTTGGCTTGGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGG
* * *
32672042 ACCGAGGGTTGTGGCAGCGGGACCGGTAGCACGCAAAGGGGAACCGGGCCGATCCCTGGCTAGCG
196 ACCAAGGGTTGTGGCAGCGGGACCGGTAGCACGCAGAGGGG-ATCGGGCCGATCCCTGGCTAGCG
* * * *
32672107 CATTACGCCTCTCCGGCTGGCTCAATG-CTGATACGCTCGTTTCGTGGGTTGACTTAG
260 CATTATGCCTCTCCGGCCGGCTCAATGCCCG-CACGCTCGTTTCGTGGGTTGACTTAG
*
32672164 GCATACGGAGTTCATTCCCCAGTCTAAACATACAGAGTTCATTCCCAGTTTAAGATCAAACCAGA
1 GCATACGGAGTTCATT-CCCAG--T---C-T--A-AG---A-T--C------AGATCAGACC-GA
* * * * * *
32672229 TCGAGTGTTGCGGTAACAGGATC-AGTAGCACGCAGGGGAGATCGGGCCGATCCTCGGCTTACGC
43 --G-G-GTTGCGGTAGCAGGATCGA-CAGCACGCAGGGGGGACCGGGCCGATCCCCGACTTACGC
* * * * * *
32672293 ATTCTGCCTCTCTGACCCGTTGAGTGCACACACGCCCGTTTCATGGGTTGGCTTGGGCATAGGGA
103 ATTCTGCCTCTCTGACCGGCTGAGCGCCCGCACGCCCATTTCATGGGTTGGCTTGGGCATAGGGA
** * * * ** *
32672358 GTTCATTCCATGTCTAAGCCCCAGCCAGACCAAGGGCTGTGGTAGCAGGACCGACAGCACTCAGA
168 GTTCATTCCATGTCTAAGCCCCAGCTGGACCAAGGGTTGTGGCAGCGGGACCGGTAGCACGCAGA
* * * *
32672423 GGGGGATCGGGCCAATCCCCT-GCTTA-CGCATTATGCCTCTCCGACCGGTTCAATGCCCACACG
233 -GGGGATCGGGCCGAT-CCCTGGC-TAGCGCATTATGCCTCTCCGGCCGGCTCAATGCCCGCACG
32672486 CTCGTTTCGTGGGTTGACTTAG
295 CTCGTTTCGTGGGTTGACTTAG
* * * * * * *
32672508 GCATACAGAGTTCATTCCTAGTCTAAGATCGGTTCAGATCGAGGGTTGCGATAGCAGGATCGACG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGTAGCAGGATCGACA
* * * * *
32672573 GCACGCAGGGGGGATCAGGTCGATCCCC-AGCTTGCGCATTCTGCCTCTC-CAGCCGGCTGAGCG
66 GCACGCAGGGGGGACCGGGCCGATCCCCGA-CTTACGCATTCTGCCTCTCTGA-CCGGCTGAGCG
*** * * * * *
32672636 CCCGCACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAGGCATATGGA
129 CCCGCACGCCCATTTCATGGGTTGGCTTGGGCATAGGGAGTTCAT-TCCA---T-GTC-TA---A
* * * * * * *
32672701 GTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGT-TTGCGGCAGCGGGA-CTGTCACCACGCA
185 G--C---CCCAG-CT-GGACCA-A--GG-----GTTGTGGCAGC-G--GGACCGGT-AGCACGCA
* * * * * * * * * ** * *
32672764 AAGGGGGACCAGGCCGATCCCTGACTTGCGCATTATGACTTTTCGGCCTGCTCAGCGCCTGCATG
231 GA-GGGGATCGGGCCGATCCCTGGCTAGCGCATTATGCCTCTCCGGCCGGCTCAATGCCCGCACG
* *
32672829 CTCCTTTCGTGGGTTGACTTAA
295 CTCGTTTCGTGGGTTGACTTAG
* * * * ** *
32672851 GCATACGGAGTTCATTCCCAGTC-AAGATCGGATCGGATCGAGGGTTGTGACAGCAGGATTGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGTAGCAGGATCGACA
* * * * * * * * *
32672915 GCACGTAGGGGGGATCGGGTCGATCCTCGACTTACGCATTCTACCTCTCTGACCAGCTAACCACC
66 GCACGCAGGGGGGACCGGGCCGATCCCCGACTTACGCATTCTGCCTCTCTGACCGGCTGAGCGCC
* * * * * * * * *
32672980 CGCACGCTCGTTTCGTGGGTTGGCTTAGGCTTACGGAGGTCATTCCATGTCTAAGCCCCAGCCGA
131 CGCACGCCCATTTCATGGGTTGGCTTGGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGG
* *
32673045 ACCGAGGGTTATGGC
196 ACCAAGGGTTGTGGC
32673060 CCCCTATCCC
Statistics
Matches: 957, Mismatches: 186, Indels: 138
0.75 0.15 0.11
Matches are distributed among these distances:
316 4 0.00
317 379 0.40
318 11 0.01
319 4 0.00
320 1 0.00
321 3 0.00
322 8 0.01
323 5 0.01
324 1 0.00
325 1 0.00
326 5 0.01
327 3 0.00
328 7 0.01
330 2 0.00
331 8 0.01
332 1 0.00
333 8 0.01
334 3 0.00
335 1 0.00
336 4 0.00
337 3 0.00
338 2 0.00
339 8 0.01
340 6 0.01
341 6 0.01
342 131 0.14
343 99 0.10
344 232 0.24
345 11 0.01
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (316 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGTAGCAGGATCGACA
GCACGCAGGGGGGACCGGGCCGATCCCCGACTTACGCATTCTGCCTCTCTGACCGGCTGAGCGCC
CGCACGCCCATTTCATGGGTTGGCTTGGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGG
ACCAAGGGTTGTGGCAGCGGGACCGGTAGCACGCAGAGGGGATCGGGCCGATCCCTGGCTAGCGC
ATTATGCCTCTCCGGCCGGCTCAATGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
Found at i:32672455 original size:661 final size:660
Alignment explanation
Indices: 32671186--32672680 Score: 1701
Period size: 661 Copynumber: 2.3 Consensus size: 660
32671176 CCAAGTCTAA
* * * * * * * * *
32671186 GCATAC-GAAGTTCATTCACAGTCTAAAATCAAATCAGATCGAGTGTTGCGATAGCAGGATTGAT
1 GCATACAG-AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGATAGCAGGATCGAC
* * * * *** * * * * * * *
32671250 AGCTCGTAGGGGAGACCAGATCGATCCTTGGCTTGCACATTCTACCTTTCCGGCCGGTTGAGTGC
65 AGCACGCAGGGGGGACCAGGTCGATCCCCAGCTTACGCATTCTACCTCTCCAGCCGGCTAAGCGC
* *
32671315 CCGCACGCCCGTTTCGTGCGTTGGCTTGGGCATAGGGGGTTCATTCCATGTCTAAGCCCCAGCCA
130 CCGCACG-CCGTTTCGTGGGTTGGCTTGGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCA
* * * * * * *
32671380 AATCGAGGGTTGTGGCAACGGGACTGACAGCATGCAGAGGGGGATCGGGTCGATCCCCGGCTAGC
194 AACCGAGGGTTGTGGCAACGGGACCGACAGCACGCAAAGGGGAACCGGGCCGATCCCCGGCTAGC
* * * *
32671445 GCATTATGCCTCTCCGGTCGGCTCAGCGCCCCCACGCTCATTTTGTGGGTTGACTTAGGCATACG
259 GCATTACGCCTCTCCGGTCGGCTCAACGCCCACACGCTCATTTCGTGGGTTGACTTAGGCATACG
* * *** *
32671510 AAGTTCATTCCCCAGTCTAAGCATACGGAGTTCAATCCCAGTCTAAGATTGGATCAGACCAAGTG
324 AAGTTCATTCCCCAGTCTAAACATACAGAGTTCAATCCCAGTCTAAGATCAAACCAGACCAAGTG
* * * * * * **
32671575 TTGTAGCAGCAGGATCGGCAGCACGTAGGGGCAACCGGGCCGATTCTTGGCTTGTGCATTCTGCC
389 TTGCAGCAACAGGATCAGCAGCACGCAGGGGCAACCGGGCCGATCCTCGGCTTACGCATTCTGCC
* * *
32671640 TCTCCGACCGGCTGAGTGCCCGCACGCCCATTTCATGGGTTGGCTTGGGCATAGGGAGTTCACTC
454 TCTCCGACCCGCTGAGTGCACACACGCCCATTTCATGGGTTGGCTTGGGCATAGGGAGTTCACTC
* * * * * ** *
32671705 CATGTCTAAGCCCTAGCTGAACCAAGGGTTGTGGCAGCGGGATCGGTAGCACGTAGAGGGTGATC
519 CATGTCTAAGCCCCAGCAGAACCAAGGGCTGTGGCAGCAGGACCGACAGCACGTAGAGGGGGATC
*** * * * * * * *
32671770 GGGTTGATCCCTGGCTTGCGCATTATGCCTCTCTGGCCGGCTCAGTGCCCGCACTCTCGTTTTGT
584 GGGCCAATCCCTGGCTTACGCATTATGCCTCTCCGACCGGCTCAATGCCCACACGCTCGTTTCGT
*
32671835 AGGTTAATTTAG
649 AGGTTAACTTAG
* * * * *
32671847 TCATACGGAGTTCATTCCCATTCTAAGATCAGACCAGACCGAGGGTTATGGTAGCAGGATCGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGATAGCAGGATCGACA
* *
32671912 GCACGCAGGGGGGACCGGGTCGATCCCC-GACTTACGCATTCTACCTCT-CTGACCGGCTAAGCG
66 GCACGCAGGGGGGACCAGGTCGATCCCCAG-CTTACGCATTCTACCTCTCCAG-CCGGCTAAGCG
* * *
32671975 CCTGCACGTCCATTTCGTGGGTTGGCTTGGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCT
129 CCCGCACG-CCGTTTCGTGGGTTGGCTTGGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCC
** * ** *
32672040 GGACCGAGGGTTGTGGCAGCGGGACCGGTAGCACGCAAAGGGGAACCGGGCCGATCCCTGGCTAG
193 AAACCGAGGGTTGTGGCAACGGGACCGACAGCACGCAAAGGGGAACCGGGCCGATCCCCGGCTAG
* ** * *
32672105 CGCATTACGCCTCTCCGG-CTGGCTCAATGCTGATACGCTCGTTTCGTGGGTTGACTTAGGCATA
258 CGCATTACGCCTCTCCGGTC-GGCTCAACGCCCACACGCTCATTTCGTGGGTTGACTTAGGCATA
* * * * *
32672169 CGGAGTTCATTCCCCAGTCTAAACATACAGAGTTCATTCCCAGTTTAAGATCAAACCAGATCGAG
322 CGAAGTTCATTCCCCAGTCTAAACATACAGAGTTCAATCCCAGTCTAAGATCAAACCAGACCAAG
* * * *
32672234 TGTTGCGGTAACAGGATCAGTAGCACGCAGGGG-AGATCGGGCCGATCCTCGGCTTACGCATTCT
387 TGTTGCAGCAACAGGATCAGCAGCACGCAGGGGCA-ACCGGGCCGATCCTCGGCTTACGCATTCT
* * *
32672298 GCCTCTCTGACCCGTTGAGTGCACACACGCCCGTTTCATGGGTTGGCTTGGGCATAGGGAGTTCA
451 GCCTCTCCGACCCGCTGAGTGCACACACGCCCATTTCATGGGTTGGCTTGGGCATAGGGAGTTCA
* *
32672363 TTCCATGTCTAAGCCCCAGCCAG-ACCAAGGGCTGTGGTAGCAGGACCGACAGCAC-TCAGAGGG
516 CTCCATGTCTAAGCCCCAG-CAGAACCAAGGGCTGTGGCAGCAGGACCGACAGCACGT-AGAGGG
*
32672426 GGATCGGGCCAATCCCCT-GCTTACGCATTATGCCTCTCCGACCGGTTCAATGCCCACACGCTCG
579 GGATCGGGCCAAT-CCCTGGCTTACGCATTATGCCTCTCCGACCGGCTCAATGCCCACACGCTCG
* *
32672490 TTTCGTGGGTTGACTTAG
643 TTTCGTAGGTTAACTTAG
* * ** * * *
32672508 GCATACAGAGTTCATTCCTAGTCTAAGATCGGTTCAGATCGAGGGTTGCGATAGCAGGATCGACG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGATAGCAGGATCGACA
* * * *
32672573 GCACGCAGGGGGGATCAGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCAGCCGGCTGAGCGCC
66 GCACGCAGGGGGGACCAGGTCGATCCCCAGCTTACGCATTCTACCTCTCCAGCCGGCTAAGCGCC
* * * * *
32672638 CGCACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT
131 CGCACGC-CGTTTCGTGGGTTGGCTTGGGCATAGGGAGTTCAT
32672681 CCCCAGTCTA
Statistics
Matches: 690, Mismatches: 133, Indels: 22
0.82 0.16 0.03
Matches are distributed among these distances:
660 7 0.01
661 673 0.98
662 10 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (660 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGATAGCAGGATCGACA
GCACGCAGGGGGGACCAGGTCGATCCCCAGCTTACGCATTCTACCTCTCCAGCCGGCTAAGCGCC
CGCACGCCGTTTCGTGGGTTGGCTTGGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAAA
CCGAGGGTTGTGGCAACGGGACCGACAGCACGCAAAGGGGAACCGGGCCGATCCCCGGCTAGCGC
ATTACGCCTCTCCGGTCGGCTCAACGCCCACACGCTCATTTCGTGGGTTGACTTAGGCATACGAA
GTTCATTCCCCAGTCTAAACATACAGAGTTCAATCCCAGTCTAAGATCAAACCAGACCAAGTGTT
GCAGCAACAGGATCAGCAGCACGCAGGGGCAACCGGGCCGATCCTCGGCTTACGCATTCTGCCTC
TCCGACCCGCTGAGTGCACACACGCCCATTTCATGGGTTGGCTTGGGCATAGGGAGTTCACTCCA
TGTCTAAGCCCCAGCAGAACCAAGGGCTGTGGCAGCAGGACCGACAGCACGTAGAGGGGGATCGG
GCCAATCCCTGGCTTACGCATTATGCCTCTCCGACCGGCTCAATGCCCACACGCTCGTTTCGTAG
GTTAACTTAG
Found at i:32672492 original size:159 final size:159
Alignment explanation
Indices: 32672255--32672690 Score: 468
Period size: 159 Copynumber: 2.8 Consensus size: 159
32672245 CAGGATCAGT
* * * * *
32672255 AGCACGCAG-GGGAGATCGGGCCGATCCTCGGCTTACGCATTCTGCCTCTCTGACCCGTTGAGTG
1 AGCACGCAGAGGGGGATCGGGCCGATCCCCAGCTTACGCATTCTGCCTCTCCGACCGGTTGAGTG
* * * * * *
32672319 CACACACGCCCGTTTCATGGGTTGGCTTGGGCATAGGGAGTTCATTCC-ATGTCTAAGCCCCAG-
66 CCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTA-GTCTAAG-ACCAGT
* *
32672382 CCAGACCAAGGGCTGTGGTAGCAGGACCGAC
129 CCAGACCAAGGGCTGCGATAGCAGGACCGAC
* * * * * *
32672413 AGCACTCAGAGGGGGATCGGGCCAATCCCCTGCTTACGCATTATGCCTCTCCGACCGGTTCAATG
1 AGCACGCAGAGGGGGATCGGGCCGATCCCCAGCTTACGCATTCTGCCTCTCCGACCGGTTGAGTG
* * * * *
32672478 CCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCTAGTCTAAGATCGGTTC
66 CCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGACCAGTCC
* * * *
32672543 AGATCGAGGGTTGCGATAGCAGGATCGAC
131 AGACCAAGGGCTGCGATAGCAGGACCGAC
* * * * * *
32672572 GGCACGCAG-GGGGGATCAGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCC-AGCCGGCTGAGC
1 AGCACGCAGAGGGGGATCGGGCCGATCCCCAGCTTACGCATTCTGCCTCTCCGA-CCGGTTGAGT
* * * *
32672635 GCCCGCACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTA
65 GCCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTA
32672691 GGCATATGGA
Statistics
Matches: 229, Mismatches: 45, Indels: 8
0.81 0.16 0.03
Matches are distributed among these distances:
157 1 0.00
158 102 0.45
159 125 0.55
160 1 0.00
ACGTcount: A:0.19, C:0.29, G:0.29, T:0.23
Consensus pattern (159 bp):
AGCACGCAGAGGGGGATCGGGCCGATCCCCAGCTTACGCATTCTGCCTCTCCGACCGGTTGAGTG
CCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGACCAGTCC
AGACCAAGGGCTGCGATAGCAGGACCGAC
Found at i:32672657 original size:158 final size:157
Alignment explanation
Indices: 32672192--32672690 Score: 511
Period size: 158 Copynumber: 3.2 Consensus size: 157
32672182 CCAGTCTAAA
* * * *
32672192 CATACAGAGTTCATTCCCAGTTTAAGATCAAACCAGATCGAGTGTTGCGGTAACAGGATC-A-GT
1 CATACAGAGTTCATTCCCAGTCTAAGATC-AGCCAGATCGAGGGTTGCGGTAGCAGGATCGACG-
* * * * *
32672255 AGCACGCAGGGGAGATCGGGCCGATCCTCGGCTTACGCATTCTGCCTCTCTGACCCGTTGAGTGC
64 -GCACGCAGGGGGGATCGGGCCGATCCCCAGCTTACGCATTCTGCCTCTCCGACCGGTTGAGTGC
* * * *
32672320 ACACACGCCCGTTTCATGGGTTGGCTTGGG
128 CCACACGCTCGTTTCATGGGTTGACTTAGG
** ** * * * * * *
32672350 CATAGGGAGTTCATT-CCATGTCTAAGCCCCAGCCAGACCAAGGGCTGTGGTAGCAGGACCGACA
1 CATACAGAGTTCATTCCCA-GTCTAAG-ATCAGCCAGATCGAGGGTTGCGGTAGCAGGATCGACG
* * * * * *
32672414 GCACTCAGAGGGGGATCGGGCCAATCCCCTGCTTACGCATTATGCCTCTCCGACCGGTTCAATGC
64 GCACGCAG-GGGGGATCGGGCCGATCCCCAGCTTACGCATTCTGCCTCTCCGACCGGTTGAGTGC
*
32672479 CCACACGCTCGTTTCGTGGGTTGACTTAGG
128 CCACACGCTCGTTTCATGGGTTGACTTAGG
* * * *
32672509 CATACAGAGTTCATTCCTAGTCTAAGATCGGTTCAGATCGAGGGTTGCGATAGCAGGATCGACGG
1 CATACAGAGTTCATTCCCAGTCTAAGATCAG-CCAGATCGAGGGTTGCGGTAGCAGGATCGACGG
* * * * *
32672574 CACGCAGGGGGGATCAGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCC-AGCCGGCTGAGCGCC
65 CACGCAGGGGGGATCGGGCCGATCCCCAGCTTACGCATTCTGCCTCTCCGA-CCGGTTGAGTGCC
* *
32672638 CGCACGCTTGTTTCATGGGTTGACTTAGG
129 CACACGCTCGTTTCATGGGTTGACTTAGG
* *
32672667 CATACGGAGTTCATCCCCAGTCTA
1 CATACAGAGTTCATTCCCAGTCTA
32672691 GGCATATGGA
Statistics
Matches: 273, Mismatches: 60, Indels: 16
0.78 0.17 0.05
Matches are distributed among these distances:
157 4 0.01
158 142 0.52
159 125 0.46
160 2 0.01
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.23
Consensus pattern (157 bp):
CATACAGAGTTCATTCCCAGTCTAAGATCAGCCAGATCGAGGGTTGCGGTAGCAGGATCGACGGC
ACGCAGGGGGGATCGGGCCGATCCCCAGCTTACGCATTCTGCCTCTCCGACCGGTTGAGTGCCCA
CACGCTCGTTTCATGGGTTGACTTAGG
Found at i:32672693 original size:26 final size:26
Alignment explanation
Indices: 32672663--32672716 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
32672653 TGGGTTGACT
32672663 TAGGCATACGGAGTTCATCCCCAGTC
1 TAGGCATACGGAGTTCATCCCCAGTC
* *
32672689 TAGGCATATGGAGTTCATTCCCAGTC
1 TAGGCATACGGAGTTCATCCCCAGTC
32672715 TA
1 TA
32672717 AGATCAGACC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (26 bp):
TAGGCATACGGAGTTCATCCCCAGTC
Found at i:32673576 original size:26 final size:26
Alignment explanation
Indices: 32673540--32673592 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
32673530 GTTGAAGTAG
32673540 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
32673566 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
32673592 G
1 G
32673593 ATCAGACTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:32673950 original size:159 final size:159
Alignment explanation
Indices: 32673573--32674068 Score: 471
Period size: 159 Copynumber: 3.1 Consensus size: 159
32673563 TAAGCATATG
* * * *
32673573 GAGTTCATTCCCA-GTCTAAGATCAGACTAGACCGAGGGTTACGACAGCATGATCGGTAGCACGC
1 GAGTTCATT-CCATGTCTAAGATCAGACCAGACCGAGGGTTATGACAGCAGGATCGGCAGCACGC
* * *
32673637 A-A-CGGGGAAT-GGGCCGATCCCCAGCTTGCGCATTCTACCTCTCTGGCCGG-TTGAGCGCCCG
65 AGAGC-GGG-ATCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGGCTT-AGCG-CCG
*
32673698 TACA-CCCATTTCATGGGTTGGCTTAGGCATA-A
126 TACAGCTCATTTCATGGGTTGGCTTAGGCATACA
* * * *
32673730 GGAGTTCATTCCATGTCTAAG-TCCCAG-CCGGACCGAAGGTTATGGCAGC-GAGACCGGCAGCA
1 -GAGTTCATTCCATGTCTAAGAT--CAGACCAGACCGAGGGTTATGACAGCAG-GATCGGCAGCA
*** *
32673792 CGCAGAGCGGGATCGGGCCGATCCTTGGCTTGCGCATTATGCCTCTCCGACCGGCTTAGCGCC-T
62 CGCAGAGCGGGATCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGGCTTAGCGCCGT
* *
32673856 ACATGCTCATTTCGTGGGTTGACTTAGGCATACA
127 ACA-GCTCATTTCATGGGTTGGCTTAGGCATACA
* * * * **
32673890 GAGTTCATTCCCA-GTCTAAGATCAGACCAAACCGAGGGTTGTGATAGCAGGATCGACAGCACAT
1 GAGTTCATT-CCATGTCTAAGATCAGACCAGACCGAGGGTTATGACAGCAGGATCGGCAGCACGC
* * * * * * *
32673954 AGGGGGGGACCAGGTCGATCCCCAGCTTGCACATTCTGCCTCTCCGACCGGCTGAATGC-CCGTA
65 AGAGCGGGATCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGGCT-TA-GCGCCGTA
* *
32674018 C-GCTCGTTTCATTGGTTGGCTTAGGCATACA
128 CAGCTCATTTCATGGGTTGGCTTAGGCATACA
*
32674049 AAGTTCATTCCATGTCTAAG
1 GAGTTCATTCCATGTCTAAG
32674069 CATACGGAGT
Statistics
Matches: 275, Mismatches: 44, Indels: 37
0.77 0.12 0.10
Matches are distributed among these distances:
157 8 0.03
158 56 0.20
159 194 0.71
160 12 0.04
161 5 0.02
ACGTcount: A:0.22, C:0.28, G:0.27, T:0.23
Consensus pattern (159 bp):
GAGTTCATTCCATGTCTAAGATCAGACCAGACCGAGGGTTATGACAGCAGGATCGGCAGCACGCA
GAGCGGGATCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGGCTTAGCGCCGTACAG
CTCATTTCATGGGTTGGCTTAGGCATACA
Found at i:32674073 original size:26 final size:26
Alignment explanation
Indices: 32674042--32674094 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
32674032 GTTGGCTTAG
32674042 GCATACAAAGTTCATT-CCATGTCTAA
1 GCATACAAAGTTCATTCCCA-GTCTAA
**
32674068 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
32674094 G
1 G
32674095 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAGTCTAA
Found at i:32674438 original size:26 final size:26
Alignment explanation
Indices: 32674409--32674461 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
32674399 GATGACTTAG
*
32674409 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
32674435 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
32674461 G
1 G
32674462 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:32675188 original size:869 final size:868
Alignment explanation
Indices: 32673503--32675829 Score: 2546
Period size: 869 Copynumber: 2.7 Consensus size: 868
32673493 CTCTGGTCAG
**
32673503 CTGAGCGCCCGTAAGCTCGTATT-GTGGGTTGAAGTAGGCATACGGAGTTCATCCCCAGTCTAAG
1 CTGAGCGCCCGTAAGCTCGT-TTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
* * * **
32673567 CATATGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTACGACAGCATGATCGGTAG
65 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAGCAAGATCGACAG
* ** * * * * *
32673632 CACGCAACGGGGAATGGGCCGATCCCCAGCTTGCGCATTCTACCTCTCTGGCCGGTTGAGCGCCC
130 CACGTAGGGGGGACTGGGCCGAT-CCCAGCTTACGCATTCTACCTCTC-CGACGGTTGAGCGCCG
* * * * *
32673697 G-TACACCCATTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGTCCCAGCCGG
193 GAT-CGCCTATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGA
* * * * * *
32673761 ACCGAAGGTTATGGCAGCGAGACCGGCAGCACGCAGAGCGGGATCGGGCCGATCCTTGGCTTGCG
257 ACCGAGGGTTGTGGCAGCGAGACCGGCAGCACGCAGAGGGGGACCGGGCTGATCCTCGGCTTGCG
* * * * * *
32673826 CATTATGCCTCTCCGACCGGCTTAGCGCCTACATGCTCATTTCGTGGGTTGACTTAGGCATACAG
322 CATTATGCCTCTTCGGCTGGCTCAGTGCCT-CAAGCTCATTTCGTGGGTTGACTTAGGCATACAG
* * * * *
32673891 AGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTGTGATAGCAGGATCGACAGCACATAG
386 AGTTCATTCCCAGTCTAAGATCAGACCAAACTGAGGGTTGCGATAGCAAGATCGACAGCACGTAA
* *
32673956 GGGGGGACCAGGTCGATCCCC-AGCTTGCACATTCTGCCTCTCCGACCGGCTGA-ATGCCCGTAC
451 GGGGGGACCGGGTCGATCCCCGA-CTTGCACATTCTGCCTCTCCGACC--CTGAGA--CCC-CAC
* * * *
32674019 GCTCGTTTCATTGGTTGGCTTAGGCATACAAAGTTCATTCCATGTCTAAGCATACGGAGTTCATT
510 GCTAGTTTCGTAGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATT
* ** *
32674084 CCCAGTCTAAGATCAGACCAGACCAAGGGTTGCAGAGCAGGACTAGCAGTAGGATCGACAGCATG
575 CCCAGTCTAAGATCAGACCAGACCAAGGGTTGCACAGCAGGACTAGCAACAGGATCGACAGCACG
* * *
32674149 CAAGGGGGGATCGAGCCAATCCCCGGCTTGCGCATTCTACCTTTCCAGCCGGCTGAGCACCCGCA
640 CAAGGGGGCATCGAGCCAATCCCCGGCTTGCGCATTCTACCTCTCCAGCCGGCTAAGCACCCGCA
* * * **
32674214 CACTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAGGCCACAACCGGACTG
705 CACTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCGAAGCCACAACAGGACCC
* * * *
32674279 AGGGTTGTGGCAGTAAGACTGACAGCGAGATTGACAGCACATAGAGGGGGACCGGGTTGATCCCC
770 AGGGTTGTGGCAGTAAGACAGACAGCGAGATCGACAGCACATAGAGGGGGACCGAGCTGATCCCC
* * *
32674344 GGCTTGC-TCATTAT-CC-C-T-CTC-C-GGTCGG
835 GGCTTGCGT-ATTATGCCTCATCCTCTCTAGCCGA
* * * *
32674372 TTGAGCGCCCGTACGCTTGTTTCGTGGGATGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
1 CTGAGCGCCCGTAAGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
* * *
32674437 ATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGACAGCAGGATCGACAGC
66 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAGCAAGATCGACAGC
* * * * *
32674502 ACGTAGGGGGGACTGGGCCGATGCCCAGCTTATGCATTCTGCTTCTCCGACAGGCTGAGCGTCGG
131 ACGTAGGGGGGACTGGGCCGAT-CCCAGCTTACGCATTCTACCTCTCCGAC-GGTTGAGCGCCGG
* * * *
32674567 ATCGCCTATTTCGTGGGTTGGCTTAGGCATAGGGACTTCATTCCATATCTAGGCCCCAGCCGAAC
194 ATCGCCTATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGAAC
* * * * * *
32674632 CGTGGGTTGTGGTAGCAAGACCGGTAGCACGCAGAGGGGGACCGAGTTGAT-CTGCGGCTTGCGC
259 CGAGGGTTGTGGCAGCGAGACCGGCAGCACGCAGAGGGGGACCGGGCTGATCCT-CGGCTTGCGC
* * * *
32674696 ATTATGCCTCTTCGGCTGGCTCAGTGCCTGCACGCTCATTTTGTGGGTTGACTTAGGCATACGGT
323 ATTATGCCTCTTCGGCTGGCTCAGTGCCT-CAAGCTCATTTCGTGGGTTGACTTAGGCATACAGA
* * * ** *
32674761 GTTCATTCCTAGTCTAACATCAGATCGGACTGAGGGTTGCGGTAGCAAGATCGACAGCACGTAAG
387 GTTCATTCCCAGTCTAAGATCAGACCAAACTGAGGGTTGCGATAGCAAGATCGACAGCACGTAAG
* * *
32674826 GGGGGATCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCAACTGAGCACCCACACACT
452 GGGGGACCGGGTCGATCCCCGACTTGCACATTCTGCCTCTCCGACC--CTGAG-ACCC-CACGCT
* * *
32674891 AGTTTCGTGGGTTGGCTTAAGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCC
513 AGTTTCGTAGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCC
* * * * * **
32674956 AGTGTAAGATCGGATCGGACCGAGGGTTGCGACAGCAGGACTAGCAACAGGATCGGTAGCACGC-
578 AGTCTAAGATCAGACCAGACCAAGGGTTGC-ACAGCAGGACTAGCAACAGGATCGACAGCACGCA
* * * * **
32675020 AGGGGGCA-CTGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCC-GACCGGCTAAGTGCCCGCA
642 AGGGGGCATC-GAGCCAATCCCCGGCTTGCGCATTCTACCTCTCCAG-CCGGCTAAGCACCCGCA
* * * * **
32675083 CACTTGTTTTGTGGGTTGGCTTAGGTATAC-AGAGTTCATTCCATGTCGAAGCCCCAGTAGGACC
705 CACTCGTTTCGTGGGTTGGCTTAGGCATACGA-AGTTCATTCCATGTCGAAGCCACAACAGGACC
* * * * *
32675147 CAGGGTTGTGGCAG-CAGCACCAG-TAGCGGGATCGGCAGCACATAGAGGGGGATCGAGCTGATC
769 CAGGGTTGTGGCAGTAAG-A-CAGACAGCGAGATCGACAGCACATAGAGGGGGACCGAGCTGATC
*
32675210 CTCGGCTTGCGTATTATGCCTTTTCGATCGACCTCTCTAGCCGA
832 CCCGGCTTGCGTATTATGCC---TC-AT---CCTCTCTAGCCGA
* * * * * * *
32675254 CTGAGCGCTCGCATGCTCGTTTCATAGGTTAACTTAGGCATACGGAGTTCATGCCCAGTCTAAGC
1 CTGAGCGCCCGTAAGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
* * * **
32675319 ATACGGAGTTCATTCCCAGTCTAAGATCAGATC-GAACTGAGGGTTGCGGTAGCAAGATCGACAG
66 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTACGACAGCAAGATCGACAG
* * * * *
32675383 CTCGTAGGGAGGACCGGGCCGATCCTCAACTTACGCATTCTACCTCTCCGATCGGTTGAGTGCCC
130 CACGTAGGGGGGACTGGGCCGATCC-CAGCTTACGCATTCTACCTCTCCGA-CGGTTGAGCG-CC
* * * * *
32675448 GCAT-GCCTGTTTCATGGATTGGCTTAAGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTC-A
192 GGATCGCCTATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGA
* * * * *
32675511 GACCGAGGGTTGTGGCAGCGGGATCGACAGCACGCAGAGGGGGACTGGGCTGATCCTCGACTTGC
257 -ACCGAGGGTTGTGGCAGCGAGACCGGCAGCACGCAGAGGGGGACCGGGCTGATCCTCGGCTTGC
* * * * *
32675576 TCATTATGCCTCTTC-GAT--C-GA-T--C-CAAGCTCATTTCATGGGTTGACTTAGGCATATAG
321 GCATTATGCCTCTTCGGCTGGCTCAGTGCCTCAAGCTCATTTCGTGGGTTGACTTAGGCATACAG
* * * *
32675633 AGTTCATTCCCAATCTAAGATCAGACCAAACTGAGGGTTACGATAGCAAGATTGACAGCACG-CA
386 AGTTCATTCCCAGTCTAAGATCAGACCAAACTGAGGGTTGCGATAGCAAGATCGACAGCACGTAA
* * * * * * *
32675697 GGGTGGGACCGAGTCGATCCCCGGCTTGCTCATTCTGCCTTTCCGA-CC---GA-TCCATGCTTG
451 GGG-GGGACCGGGTCGATCCCCGACTTGCACATTCTGCCTCTCCGACCCTGAGACCCCACGCTAG
32675757 TTTCGTAGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAG
515 TTTCGTAGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAG
32675822 TCTAAGAT
580 TCTAAGAT
32675830 TTTGAGCCAC
Statistics
Matches: 1217, Mismatches: 207, Indels: 73
0.81 0.14 0.05
Matches are distributed among these distances:
864 74 0.06
865 1 0.00
866 1 0.00
867 1 0.00
868 11 0.01
869 673 0.55
870 35 0.03
871 1 0.00
872 5 0.00
873 118 0.10
874 1 0.00
875 1 0.00
876 1 0.00
877 1 0.00
878 1 0.00
879 1 0.00
880 3 0.00
881 7 0.01
882 274 0.23
883 7 0.01
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.24
Consensus pattern (868 bp):
CTGAGCGCCCGTAAGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAGCAAGATCGACAGC
ACGTAGGGGGGACTGGGCCGATCCCAGCTTACGCATTCTACCTCTCCGACGGTTGAGCGCCGGAT
CGCCTATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCG
AGGGTTGTGGCAGCGAGACCGGCAGCACGCAGAGGGGGACCGGGCTGATCCTCGGCTTGCGCATT
ATGCCTCTTCGGCTGGCTCAGTGCCTCAAGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTC
ATTCCCAGTCTAAGATCAGACCAAACTGAGGGTTGCGATAGCAAGATCGACAGCACGTAAGGGGG
GACCGGGTCGATCCCCGACTTGCACATTCTGCCTCTCCGACCCTGAGACCCCACGCTAGTTTCGT
AGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG
ATCAGACCAGACCAAGGGTTGCACAGCAGGACTAGCAACAGGATCGACAGCACGCAAGGGGGCAT
CGAGCCAATCCCCGGCTTGCGCATTCTACCTCTCCAGCCGGCTAAGCACCCGCACACTCGTTTCG
TGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCGAAGCCACAACAGGACCCAGGGTTGTGGC
AGTAAGACAGACAGCGAGATCGACAGCACATAGAGGGGGACCGAGCTGATCCCCGGCTTGCGTAT
TATGCCTCATCCTCTCTAGCCGA
Found at i:32675321 original size:26 final size:26
Alignment explanation
Indices: 32675291--32675343 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
32675281 GTTAACTTAG
32675291 GCATACGGAGTTCATGCCCAGTCTAA
1 GCATACGGAGTTCATGCCCAGTCTAA
*
32675317 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATGCCCAGTCTAA
32675343 G
1 G
32675344 ATCAGATCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATGCCCAGTCTAA
Found at i:32675811 original size:26 final size:26
Alignment explanation
Indices: 32675775--32675827 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32675765 GTTGGCTTAG
32675775 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
32675801 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
32675827 G
1 G
32675828 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:32677383 original size:26 final size:26
Alignment explanation
Indices: 32677334--32677385 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
32677324 TTGACTTAGA
*
32677334 CATACGGAGTTCATCTCCAGTCTAAG
1 CATACGGAGTTCATCTCCAATCTAAG
32677360 CATACGGAGTTCAT-TCCCAATCTAAG
1 CATACGGAGTTCATCT-CCAATCTAAG
32677386 ATCGAATCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATCTCCAATCTAAG
Found at i:32677743 original size:159 final size:158
Alignment explanation
Indices: 32677359--32677950 Score: 439
Period size: 159 Copynumber: 3.7 Consensus size: 158
32677349 TCCAGTCTAA
* * * * * * *
32677359 GCATACGGAGTTCATTCCCAATCTAAGATCGAATCGGATCAAGGTTTG-CGACAGTAGGATCGGT
1 GCATACGGAGTTCATTCCCAATCTAAGATAGAATCGGATCGAGGGTTGTAG-CAGCAGGACCGGC
* * * * * * * *
32677423 AGCATGCA-AGGGGCACCAGGCCGATCCTTGGCTTACGCATTCTGCCTTTTCGACCGGCTGAGAG
65 AGCACGCAGAGGGG-ACCGGGCCGATCCTTGGCTTACGCATTATGCCTCTTCGGCCAGCTAAGCG
* * * *
32677487 CCCGGACACCCATTTCGTAGGTTGGCTTAG
129 CCCGCACACCCGTTTCGTGGGTTGACTTAG
* * * * * * * * *
32677517 GCATAGGGAGTTCATT-CCATGTCTAAGCCTCAG--CCGGACCGATGGTTGTGGTAGCGGGACCG
1 GCATACGGAGTTCATTCCCA-ATCTAAG-AT-AGAATCGGATCGAGGGTTGTAGCAGCAGGACCG
* * *
32677579 GCAGCACGCAGAGGCGGACCGGGCTGATCGTTGGCTTATGCATTATGCCTCTTCGGCCAGCTAAG
63 GCAGCACGCAGAGG-GGACCGGGCCGATCCTTGGCTTACGCATTATGCCTCTTCGGCCAGCTAAG
* *
32677644 CGCCCGCACCCCCGTTTCGTGGGTTGACTTAT
127 CGCCCGCACACCCGTTTCGTGGGTTGACTTAG
* * *
32677676 GCATACGGAGTTCATTCCCAGTCTAAGATAGAATCGGATCGAGGGTTGTAGCAGCAAGACCGACA
1 GCATACGGAGTTCATTCCCAATCTAAGATAGAATCGGATCGAGGGTTGTAGCAGCAGGACCGGCA
* * * ** *
32677741 GCACAG-AGAGGGCGACTGGGCCAATCCTCGATTTACGCATTATGCCTCTATC-GCCAGCTCAGC
66 GCAC-GCAGAGGG-GACCGGGCCGATCCTTGGCTTACGCATTATGCCTCT-TCGGCCAGCTAAGC
* ** * *
32677804 GCCCACATGCTCGTTTTGTGGGTTGACTTAG
128 GCCCGCACACCCGTTTCGTGGGTTGACTTAG
* * * * * * * *
32677835 GCATACAGAGTTCATTCCGAATCTAAGATCGGACCGG-GCTAAGGGTTG-AGGCAGCAGGATC-G
1 GCATACGGAGTTCATTCCCAATCTAAGATAGAATCGGATC-GAGGGTTGTA-GCAGCAGGACCGG
* * * ** ** *
32677897 AAGGCACGTAGGGGGGACCGGGTTGATCCCCGGCTTGCGCATTATGCCTCTTCG
64 CA-GCACGCAGAGGGGACCGGGCCGATCCTTGGCTTACGCATTATGCCTCTTCG
32677951 CTCGGCCTCT
Statistics
Matches: 339, Mismatches: 78, Indels: 34
0.75 0.17 0.08
Matches are distributed among these distances:
157 7 0.02
158 80 0.24
159 243 0.72
160 9 0.03
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAATCTAAGATAGAATCGGATCGAGGGTTGTAGCAGCAGGACCGGCA
GCACGCAGAGGGGACCGGGCCGATCCTTGGCTTACGCATTATGCCTCTTCGGCCAGCTAAGCGCC
CGCACACCCGTTTCGTGGGTTGACTTAG
Found at i:32678036 original size:26 final size:26
Alignment explanation
Indices: 32678006--32678084 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
32677996 GTTGACATAG
32678006 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
32678032 GCATACGGAGTTCATCCCCAGTCTAG
1 GCATACGGAGTTCATCCCCAGTCTAA
*
32678058 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
32678084 G
1 G
32678085 ATCAGACCGA
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:32678363 original size:159 final size:158
Alignment explanation
Indices: 32678132--32678561 Score: 481
Period size: 159 Copynumber: 2.7 Consensus size: 158
32678122 AGCACGTAGA
* * * * *
32678132 GGGGACCAGGCCGATCCCC-AGCTTGCGCATTCTGCCTCTCCAGTCGGCTGAGTGCCCGCACGCC
1 GGGGACCGGGCCGATCCCCGA-CTTGCGCATTCTGCCTCTCCGGTC-GCTGAGCGCCTGCACGCT
* * *
32678196 CGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAG-ACCGAGG
64 CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACAGAACCGAGG
* * *
32678260 GTTGTGGCAGCCGCACCGGCAGCACACAGAG
129 GTTGCGGCAGCAGCACCGACAGCACACA-AG
* * *
32678291 GGGGATCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGGTCAGCTCAGCGCCTGCACGCTC
1 GGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGTC-GCTGAGCGCCTGCACGCTC
* * * *** *
32678356 GTGTCATGGGTTGACTTATGCATACGGAGTTCATTCCCA-GTCTAAG-ATTGGACTGAACCGAGG
65 GTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGACAGAACCGAGG
* * * ** *
32678419 GTTGCGGCAGCAGGATCGACAGTACGTATG
129 GTTGCGGCAGCAGCACCGACAGCACACAAG
* * * ** *
32678449 GGGGACCGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTTTGGTCGACTGAGCGCTTGCACGCTC
1 GGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCG-CTGAGCGCCTGCACGCTC
32678514 GTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
65 GTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
32678562 TATGGAGTTC
Statistics
Matches: 225, Mismatches: 40, Indels: 12
0.81 0.14 0.04
Matches are distributed among these distances:
157 4 0.02
158 97 0.43
159 120 0.53
160 4 0.02
ACGTcount: A:0.17, C:0.29, G:0.30, T:0.23
Consensus pattern (158 bp):
GGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGCTGAGCGCCTGCACGCTCG
TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACAGAACCGAGGGT
TGCGGCAGCAGCACCGACAGCACACAAG
Found at i:32678521 original size:158 final size:157
Alignment explanation
Indices: 32678055--32678559 Score: 543
Period size: 158 Copynumber: 3.2 Consensus size: 157
32678045 ATCCCCAGTC
* ** * * *
32678055 TAGGCATACGGAGTTCATTCCCA-GTCTAAGATCAGACCGAACTAAGGGTTGCAGTAGTAGGATC
1 TAGGCATACGGAGTTCATT-CCATGTCTAAGATCAGACTGAACCGAGGGTTGCGGCAGCAGGATC
* * * * *
32678119 GGTAGCACGTAGAGGGGACCAGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCAGTCGGCTGAG
65 GGCAGCACGTAG-GGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGACTGAG
* * *
32678184 TGCCCGCACGCCCGTTTCATGGGTTGGCT
129 CGCCTGCACGCTCGTTTCATGGGTTGGCT
* ** * * * * * *
32678213 TAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAG-ACCGAGGGTTGTGGCAGCCGCACC
1 TAGGCATACGGAGTTCATTCCATGTCTAAG-ATCAGACTGAACCGAGGGTTGCGGCAGCAGGATC
* * *
32678277 GGCAGCACACAG-AGGGGGATCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGGTC-AGCT
65 GGCAG--CAC-GTAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGA-CT
* * *
32678340 CAGCGCCTGCACGCTCGTGTCATGGGTTGACT
126 GAGCGCCTGCACGCTCGTTTCATGGGTTGGCT
* **
32678372 TATGCATACGGAGTTCATTCCCA-GTCTAAGATTGGACTGAACCGAGGGTTGCGGCAGCAGGATC
1 TAGGCATACGGAGTTCATT-CCATGTCTAAGATCAGACTGAACCGAGGGTTGCGGCAGCAGGATC
* * * * **
32678436 GACAGTACGTATGGGGGACCGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTTTGGTCGACTGAG
65 GGCAGCACGTA-GGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGACTGAG
*
32678501 CGCTTGCACGCTCGTTTCATGGGTTGGCT
129 CGCCTGCACGCTCGTTTCATGGGTTGGCT
32678530 TAGGCATACGGAGTTCATTCCATGTCTAAG
1 TAGGCATACGGAGTTCATTCCATGTCTAAG
32678560 CATATGGAGT
Statistics
Matches: 281, Mismatches: 54, Indels: 24
0.78 0.15 0.07
Matches are distributed among these distances:
156 1 0.00
157 9 0.03
158 141 0.50
159 121 0.43
160 8 0.03
161 1 0.00
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.23
Consensus pattern (157 bp):
TAGGCATACGGAGTTCATTCCATGTCTAAGATCAGACTGAACCGAGGGTTGCGGCAGCAGGATCG
GCAGCACGTAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGACTGAGCG
CCTGCACGCTCGTTTCATGGGTTGGCT
Found at i:32678563 original size:26 final size:26
Alignment explanation
Indices: 32678533--32678585 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32678523 GTTGGCTTAG
32678533 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
32678559 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
32678585 G
1 G
32678586 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:32680139 original size:913 final size:906
Alignment explanation
Indices: 32678379--32680379 Score: 2750
Period size: 913 Copynumber: 2.2 Consensus size: 906
32678369 ACTTATGCAT
* * * * * * *
32678379 ACGGAGTTCATTCCCAGTCTAAGATTGGACTGAACCGAGGGTTGCGGCAGCAGGATCGACAGTAC
1 ACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGTGGCAGCAGGATCGGCAGCAC
* * * *
32678444 GTATGGGGGACCGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTTTGGTCGACTGAGCGCTTGCA
66 GCATGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGTCGACTGAGCGCCTGCA
*
32678509 CGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATGGAGTTCAT
131 CGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCAT
* * * * * *
32678574 TCCCAGTCTAAGATTTTGAGCCATGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTT
196 TCCCAGTCTAAGATTTTGAGCCACGATACACATGCTAGGCTCGGGCATGGGCTGGTGCCACATTT
** * * * *
32678639 TTTTTGCCCCAGGCACCATCGTCGGAGCATCGTCGGAGAGCCTAATCGGCGGCATTGGGGGTTCT
261 TTTTTGCCCCAGGCACCATCACCAGAGCATCGTCGGAGAGCCAAATCGGAGGCATTGGGGGTTCC
* * *
32678704 GACGATTGGGGGAGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTTCTTGGCCCTTA
326 GACGATTGGGGGAGCCAGGGGGTGTGCACACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTA
*
32678769 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
391 TATTGGCCCCCTATCCCTCAACAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
* *
32678834 TATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACGGTCACA
456 TATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAACGATCACA
*
32678899 AAATCTTCTCCACTTCGAGTTTTTAGCTGAACGTTTTTGTGCCTGCCAACAAAAATACAAGGATC
521 AAATCTTCTCCACTTCGAGTTTTTAGCTGAACGTTTTTGTGCATGCCAACAAAAATACAAGGATC
* *
32678964 ACCTTTACGAAATTTGGGGACAAAACTCTTTCTAAAAAAATTTTAAAAAATCCCGAACGACAAAA
586 ACCTCTACCAAATTTGGGGACAAAACTCTTTCTAAAAAAATTTTAAAAAATCCCGAACGACAAAA
* * * * *
32679029 AGTTTCAAATATCGTGAAAAATAGAAAACGAGTCATCTTGCCACGAAATTTCAAATGAAGTTTAG
651 AGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCACGAAACTTCAAATAAAGCTTAG
*
32679094 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAGGGCAAAAATATGAAGATGTG
716 GGGACCATTGTATAAATTTACAAGCCATAAAAATGGCATTGGCAGGGCAAAAATATGAAGATGTG
* * * * * *
32679159 TTTGAACCCGCCTACTACCCATTCGATCCCCAACTTGCGCATCCTTTCTCTCTGTTCGGTTGAGC
781 CTTGAACCCACCTACCACCCATTCGATCCCCAACTTACGCATCCTTGCTCTCTGTTCGGCTGAGC
* *
32679224 GCCCGCACACTCATTTCGTGGGTTGACTTAGGCATACAGAATTCA-TCCCTAGTCTAAGCAC
846 GCCCGCACACTCATTTCGTGGGTTGACTTAGGCATACAGAATACATTCCC-AATCTAAGCAC
* * *
32679285 ACGGAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGTTTGTGGTAGCAGGATCGGCAGCAC
1 ACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGTGGCAGCAGGATCGGCAGCAC
* * *
32679350 GCA-GGGGGCACCGGGTCGATCCCCGGCTTGTGCATTCTACCTCTTCGG-CTGACTGAGCGCCCG
66 GCATGGGGG-ACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGTC-GACTGAGCGCCTG
** * *
32679413 CACGCTCGTTTTGTGGGTTGGCTTCGGCATACGGAGTTCATTCCATGTATAAGCATACGGAGTTC
129 CACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTC
32679478 ATTCCCAGTCTAAGATTTTGAGCCACGATACACATGCTAGGCTCGGGCATGGGCTGGTGCCACA-
194 ATTCCCAGTCTAAGATTTTGAGCCACGATACACATGCTAGGCTCGGGCATGGGCTGGTGCCACAT
* *
32679542 TTTTTTT-CGCCAGGCGCCATCACCAGAGCATCGTCGGAGCATCGCCAGAAAGCCTCGCCGGAGG
259 TTTTTTTGCCCCAGGCACCATCACCAGAGCATCGTCGGAG-A--GCC--AAA---T---CGGAGG
* ** *
32679606 CATTGGGGGTTCCGACGATTGGGGGGGCTGGGGGGTGTGCACATATGATGTGCAATGGGTGCTGG
313 CATTGGGGGTTCCGACGATTGGGGGAGCCAGGGGGTGTGCACACATGATGTGCAATGGGTGCTGG
*
32679671 TACTTGG-CCTTATATTTGCCCCCTATCCCTCAACAAACCTCGAGAACTCACA-CCCCTTAAAGA
378 TACTTGGCCCTTATATTGGCCCCCTATCCCTCAACAAACCTCGAGAACTCACACCCCCTTAAAGA
* *
32679734 GCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTATAGTGTCTAAAATGGGGACATTTTTT
443 GCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTT
* ** *
32679799 TCAAACGATCACAAAATCTTTTCCACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCGAACAA
508 TCAAACGATCACAAAATCTTCTCCACTTCGAGTTTTTAGCTGAACGTTTTTGTGCATGCCAACAA
* *
32679864 AAATACAAGGATCACCTCTACCAAATTTGGGGACAAAACTCTTTCT-AAAAATTTTTAACAAATC
573 AAATACAAGGATCACCTCTACCAAATTTGGGGACAAAACTCTTTCTAAAAAAATTTTAAAAAATC
* * *
32679928 CCGAACCG-TAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGGGTCATCTTGCCTCGAAACTT
638 CCGAA-CGACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCACGAAACTT
* * * * *
32679992 CACATAAAGGCTTAGGGGACCATTGTATAAATTTACCAGCCATAAAACAT-TCATTGGCATGGTA
702 CAAATAAA-GCTTAGGGGACCATTGTATAAATTTACAAGCCATAAAA-ATGGCATTGGCAGGGCA
* * * * **
32680056 GAAATATGAAGATGTGCTTGAACCCACCTACCACCCGTTCGATTCTCGGCTTACGCATCC-TGCA
765 AAAATATGAAGATGTGCTTGAACCCACCTACCACCCATTCGATCCCCAACTTACGCATCCTTGC-
* * * *
32680120 TCTCTAGTT-GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTACATT
829 TCTCT-GTTCGGCTGAGCGCCCGCACACTCATTTCGTGGGTTGACTTAGGCATACAGAATACATT
* *
32680184 TCCAATCTAAGCAT
893 CCCAATCTAAGCAC
* * * * * * * *
32680198 ATGGAGTTCATTCCCAATCTAAGATCGAACCAGTCCGAGGGTTGTGACAGTAGGATCAGTAGCAC
1 ACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGTGGCAGCAGGATCGGCAGCAC
* * * * * * *
32680263 GCATAGAGGACCAGGTTGATCCTCGACTTGCGCATTCTGCCTC-TCTGGTCGACTGAGTGCCTGC
66 GCATGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTTC-GGTCGACTGAGCGCCTGC
* *
32680327 ACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGC
130 ACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
32680380 CCCAACCGGA
Statistics
Matches: 954, Mismatches: 119, Indels: 37
0.86 0.11 0.03
Matches are distributed among these distances:
904 27 0.03
905 14 0.01
906 221 0.23
907 3 0.00
909 2 0.00
912 82 0.09
913 481 0.50
914 55 0.06
915 69 0.07
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.27
Consensus pattern (906 bp):
ACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGTGGCAGCAGGATCGGCAGCAC
GCATGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGTCGACTGAGCGCCTGCA
CGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCAT
TCCCAGTCTAAGATTTTGAGCCACGATACACATGCTAGGCTCGGGCATGGGCTGGTGCCACATTT
TTTTTGCCCCAGGCACCATCACCAGAGCATCGTCGGAGAGCCAAATCGGAGGCATTGGGGGTTCC
GACGATTGGGGGAGCCAGGGGGTGTGCACACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTA
TATTGGCCCCCTATCCCTCAACAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
TATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAACGATCACA
AAATCTTCTCCACTTCGAGTTTTTAGCTGAACGTTTTTGTGCATGCCAACAAAAATACAAGGATC
ACCTCTACCAAATTTGGGGACAAAACTCTTTCTAAAAAAATTTTAAAAAATCCCGAACGACAAAA
AGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCACGAAACTTCAAATAAAGCTTAG
GGGACCATTGTATAAATTTACAAGCCATAAAAATGGCATTGGCAGGGCAAAAATATGAAGATGTG
CTTGAACCCACCTACCACCCATTCGATCCCCAACTTACGCATCCTTGCTCTCTGTTCGGCTGAGC
GCCCGCACACTCATTTCGTGGGTTGACTTAGGCATACAGAATACATTCCCAATCTAAGCAC
Found at i:32680204 original size:26 final size:26
Alignment explanation
Indices: 32680168--32680220 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
32680158 GTTGACTTAG
*
32680168 GCATACGGAGTACATTTCCAATCTAA
1 GCATACGGAGTACATTCCCAATCTAA
* *
32680194 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTACATTCCCAATCTAA
32680220 G
1 G
32680221 ATCGAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.23, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTACATTCCCAATCTAA
Found at i:32680565 original size:26 final size:26
Alignment explanation
Indices: 32680535--32680587 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
32680525 GTTGATTTAG
32680535 GCATAC-AGAGTTCATCCCCAATCTAA
1 GCATACGA-AGTTCATCCCCAATCTAA
* *
32680561 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
32680587 G
1 G
32680588 ATCGGATTAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:32680755 original size:26 final size:26
Alignment explanation
Indices: 32680719--32680771 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
32680709 GTTGGCTTAG
32680719 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* **
32680745 GCATATGGAGTTCATTCTTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
32680771 G
1 G
32680772 ATTGAACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:32680838 original size:184 final size:184
Alignment explanation
Indices: 32680521--32680929 Score: 439
Period size: 184 Copynumber: 2.2 Consensus size: 184
32680511 CGCTCATTTT
** * * *
32680521 ATGGGTTGATTTAGGCATACAGAGTTCATCCCCAATCTAAGCATACGAAGTTCATTCCCAGTCTA
1 ATGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTA
* * ** * * *
32680586 AGATCGGATTAGACCGAGGGTTGGGACAGCAGGATCGACAGCACGTAGGGGGGTCCGAGCCAATC
66 AGATCGAACTAGACCGAGACTTGCGACAGCAGGATCGACAGCACGTAGGGGGATCAGAGCCAATC
* * * * * **
32680651 CTCGGCTTGT-GCATTCTGCCTCTTCGG-CTAGCTGAGCGCCCGCACGCTTGTTTC
131 CTCGACTT-TCACATTCTGCCTCTCCGGTC-AGCTGAGCGCCCACACACCCGTTTC
* * * **
32680705 GTGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCTTAGTCTA
1 ATGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTA
* * * * * *
32680770 AGATTGAACTGGATCGAGACTTGCGACAGTAGGATCGACAGCACTTAGGAGGGATCAG-GCCGAT
66 AGATCGAACTAGACCGAGACTTGCGACAGCAGGATCGACAGCACGTAGG-GGGATCAGAGCCAAT
* *
32680834 CCTCGACTTTCACATTCTGCCTCTCCGGTCGGCTGAGCGCCCACATACCCGTTTC
130 CCTCGACTTTCACATTCTGCCTCTCCGGTCAGCTGAGCGCCCACACACCCGTTTC
* * *
32680889 ATGGGTTGGCTTAGCCAGAGGGAGTTCATT-CCATGTCTAAG
1 ATGGGTTGGCTTAGGCATACGGAGTTCATTCCCA-GTCTAAG
32680930 GCCCAGTCGA
Statistics
Matches: 185, Mismatches: 36, Indels: 8
0.81 0.16 0.03
Matches are distributed among these distances:
183 4 0.02
184 174 0.94
185 7 0.04
ACGTcount: A:0.22, C:0.25, G:0.27, T:0.26
Consensus pattern (184 bp):
ATGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTA
AGATCGAACTAGACCGAGACTTGCGACAGCAGGATCGACAGCACGTAGGGGGATCAGAGCCAATC
CTCGACTTTCACATTCTGCCTCTCCGGTCAGCTGAGCGCCCACACACCCGTTTC
Found at i:32681258 original size:26 final size:26
Alignment explanation
Indices: 32681222--32681271 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
32681212 TGGCTTAGGC
32681222 ATATAGAGTTCATT-CCATGTCTAATA
1 ATATAGAGTTCATTCCCA-GTCTAATA
*
32681248 ATATGGAGTTCATTCCCAGTCTAA
1 ATATAGAGTTCATTCCCAGTCTAA
32681272 GATCAGATTG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (26 bp):
ATATAGAGTTCATTCCCAGTCTAATA
Found at i:32681393 original size:183 final size:184
Alignment explanation
Indices: 32681064--32681428 Score: 491
Period size: 183 Copynumber: 2.0 Consensus size: 184
32681054 TGACTTTGGC
**
32681064 ATATGGAGATCATTCCCAGTCTAAGATCAAATCGGATCGAGGGTTGTGGCAGCAGGATCAACAGC
1 ATATGGAGATCATTCCCAGTCTAAGATCAAATCGGATCGAGGGTTACGGCAGCAGGATCAACAGC
* * * *
32681129 ACACAGAGGGGATCGGGTCAATCCCCAGCTTGTGCCTTCTGCCTCTCCGACAGGCTGAGCACCCG
66 ACACAGAGGGGATCGGGCCAATCCCCAGCTAGCGCATTCTGCCTCTCCGACAGGCTGAGCACCCG
* * *
32681194 TGCGCTGGTTTCGTGGGTTGGCTTAGGCATATAGAGTTCATTCCATGTCTAATA
131 TACGCTGATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAATA
* * * ***
32681248 ATATGGAGTTCATTCCCAGTCTAAGATCAGATTGGA-CTGAGGGTTACGGCAGCAGGAT-TGTAG
1 ATATGGAGATCATTCCCAGTCTAAGATCAAATCGGATC-GAGGGTTACGGCAGCAGGATCAACAG
* * * * * *
32681311 CATACATAGGGGATCGGGCCAATCCCTAGCTAGCGCATTCTGCCTCTCTGACCGGCTGAGCGCCC
65 CACACAGAGGGGATCGGGCCAATCCCCAGCTAGCGCATTCTGCCTCTCCGACAGGCTGAGCACCC
* * *
32681376 GTATGCTTATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
130 GTACGCTGATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
32681429 GCCCTAGCCG
Statistics
Matches: 156, Mismatches: 24, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
183 105 0.67
184 51 0.33
ACGTcount: A:0.22, C:0.24, G:0.28, T:0.26
Consensus pattern (184 bp):
ATATGGAGATCATTCCCAGTCTAAGATCAAATCGGATCGAGGGTTACGGCAGCAGGATCAACAGC
ACACAGAGGGGATCGGGCCAATCCCCAGCTAGCGCATTCTGCCTCTCCGACAGGCTGAGCACCCG
TACGCTGATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAATA
Found at i:32682135 original size:26 final size:26
Alignment explanation
Indices: 32682085--32682137 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
32682075 GTTGGCTTAG
**
32682085 GCATACGGAGTTCATTCCTGGTCTAA
1 GCATACGGAGTTCATTCCTAATCTAA
32682111 GCATACGGAGTTCATTCCTAATCTAA
1 GCATACGGAGTTCATTCCTAATCTAA
32682137 G
1 G
32682138 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAATCTAA
Found at i:32682922 original size:159 final size:156
Alignment explanation
Indices: 32682707--32683265 Score: 503
Period size: 158 Copynumber: 3.5 Consensus size: 156
32682697 CCAGTTTGTG
* * * * *
32682707 CATTATGCCTCTCTGGCCGGCTGACCACCCGCACGTTCATTTCATGGGTTGACTTAGGCATACGG
1 CATTCTGCCTCTCTAGCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGG
* * *
32682772 AGTTCATCCCCAGTCTAAGAAT-GGACCAGACCAAGGGTTGCGGTAGTAGGATCGATAGCACACA
66 AGTTCAT-CCCAGTCTAAG-ATCAGACC-GATCAAGGGTTGCGGTAGCAGGATCGATAGCACACA
* *
32682836 GGGGGCGACCAAGCCGATCCCCGGCTTGCA
128 GGGGG-GATCGAGCCGATCCCCGGCTTGCA
* * * ** * * * *
32682866 CATTCTACCTCTCTGGTCGGCTGAGCGGCCGCACGCCCGTTTCATTGGTTGGCTTAGGCATAGGG
1 CATTCTGCCTCTCTAGCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGG
* * * * * * *
32682931 AGTTCATTCCATGTCCAAGCTCCA-ACCGATCAAGGGTTGTGGTAACAGGA-CAGGTAGCACATA
66 AGTTCATCCCA-GTCTAAGAT-CAGACCGATCAAGGGTTGCGGTAGCAGGATC-GATAGCACACA
*
32682994 GAGGGGGATCGAGCCGATCCCCGGCTTGCG
128 G-GGGGGATCGAGCCGATCCCCGGCTTGCA
* * * * * *
32683024 CATTATGCCTCTCAAGCCAGCTCAACACCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGG
1 CATTCTGCCTCTCTAGCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGG
* * ** * * * *
32683089 AGTTCATTCCTACTCTAAGATCAGATTGGATCGAGGGTTGCGGCAGCAGGATCGACAGCATACAG
66 AGTTCA-TCCCAGTCTAAGATCAGA-CCGATCAAGGGTTGCGGTAGCAGGATCGATAGCACACAG
* * * * *
32683154 GGGTGATCGGGTCGACCCCCGACTTGCA
129 GGGGGATCGAGCCGATCCCCGGCTTGCA
* * * ** * * *
32683182 CATTCTGCCTCTCCAGTCTGCTGAGCGTCCGCGCGCTCGTTTCATGGGTTGGCTTAGGCGTACGG
1 CATTCTGCCTCTCTAGCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGG
*
32683247 AGTTCATTCCATGTCTAAG
66 AGTTCATCCCA-GTCTAAG
32683266 CATACGGAGT
Statistics
Matches: 314, Mismatches: 76, Indels: 21
0.76 0.18 0.05
Matches are distributed among these distances:
157 6 0.02
158 204 0.65
159 103 0.33
160 1 0.00
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.23
Consensus pattern (156 bp):
CATTCTGCCTCTCTAGCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGG
AGTTCATCCCAGTCTAAGATCAGACCGATCAAGGGTTGCGGTAGCAGGATCGATAGCACACAGGG
GGGATCGAGCCGATCCCCGGCTTGCA
Found at i:32683248 original size:841 final size:838
Alignment explanation
Indices: 32682222--32684106 Score: 2134
Period size: 841 Copynumber: 2.2 Consensus size: 838
32682212 GAATGCTCAA
* * * * * **
32682222 TTTCATGGGTTGACTTATGCATACGAAATTCATTCTTAGTCTATGATC-GGCCGGATCGAGGGTT
1 TTTCATGGGTTGACTTATGCATACGGAGTTCATTCCTAATCTAAGATCAGATCGGATCGAGGGTT
* * * * *
32682286 GCGGGAAGTAGGATCGAGAACACGAAGGGGGGATCGGGTCGATCCCCGTGCCTTCCGCATTCTGC
66 GC-GGAAGCAGGATCGACAGCAC-AA-GGGGGATCGGGTCGA-CCCC-CGACTTCCGCATTCTGC
* * * * *
32682351 CTCTCTGGC-GACCTGAGTGCC-CGACGTTCGTTTCGT-GGTTGGCTTAGGCATACGGAGTTGAT
126 CTCTCCGGCTG--CTGAGCGCCGCG-CGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCAT
* *
32682413 TCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTATGATCAGACTGGACCGAGGGTTGC-AGCA
188 TCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGA-CA
* * * *
32682477 GCAGGACCAGC-GACAGGATCGGCAGCACGCA-TGGGGGACCAGG-CTGAT-CCTCGGCTTGCAC
252 GCAAGACCAGCAG-CAGGATCGACAGCACGCAGGGGGGGACCAGGTC-GATCCCT-GGCTTACAC
* * *
32682538 ATTCTGCCTCTCC-GATCGGCTGAG-TGCCAACACGCTCGTTTCATGGGTTGGCTTAGGCATACG
314 ATTCTACCTCTCCGGCT-GGCTGAGCT-CCAACACACTCGTTTCATGGGTTGGCTTAGGCATACG
* * * *
32682601 GAGTTCATTCCATGTCTTAGCCCCAG-TCGGACCGAGGGTTGTGGAAGCAAGACTGATAGCGGGA
377 AAGTTCATTCCATCTCTTAGCCCCAGCT-AGACCGAGGGTTGTGGAAGCAAGACCGATAGCGGGA
* ** * * *
32682665 TCGACAGCATGCAGAGGGGGACCAGACTGATCCCAGTTTGTGCATTATGCCTC-TCTGGCCGGCT
441 TCGACAGCATGCAGAAGGGGACCA-ACTGATCCCAACTTGCGCATTATGCCTCTTC-GACCAGCT
* * *
32682729 GACCACCCGCACGTTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGAAT
504 GACCACCCACACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAG-AT
* ** *
32682794 -GGACCAGACCAAGGGTTGCGGTAGTAGGATCGATAGCACACAGGGGGCGACCAAGCCGATCCCC
568 CGGACCAGACCAAGGGTTGCGGCAACAGGATCGACAGCACACAGGGGGCGACCAAGCCGATCCCC
** ** *
32682858 GGCTTGCACATTCTACCTCTCTGGTCGGCTGAGCGGCCGCACGCCCGTTTCATTGGTTGGCTTAG
633 AACTTGCACATTCTACCTCTCTGGTCGGCTGAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAG
* *
32682923 GCATAGGGAGTTCATTCCATGTCCAAGCTCCA-ACCGATC-AAGGGTTGTGGTAACAGGA-CAGG
698 GCATAGGGAGTTCATTCCATGTCCAAGCCCCAGACCGACCGAA-GGTTGTGGTAACAGGACCA-G
* * * *
32682985 TAGCACATAGAGGGGGATCGAGCCGATCCCCGGCTTGCGCATTATGCCTCTCAAGCCAGCTCAAC
761 TAGCACACAAAGGGGGATCGAGCCGATCCCCGACTTACGCATTATGCCTCTCAAGCCAGCTCAAC
32683050 ACCCACACGCTCG
826 ACCCACACGCTCG
* * *
32683063 TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTACTCTAAGATCAGATTGGATCGAGGGTT
1 TTTCATGGGTTGACTTATGCATACGGAGTTCATTCCTAATCTAAGATCAGATCGGATCGAGGGTT
* * * *
32683128 GCGGCAGCAGGATCGACAGCATACAGGGGTGATCGGGTCGACCCCCGACTTGCACATTCTGCCTC
66 GCGGAAGCAGGATCGACAGCACA-AGGGG-GATCGGGTCGACCCCCGACTTCCGCATTCTGCCTC
* *
32683193 TCCAGTCTGCTGAGCGTCCGCGCGCTCGTTTCATGGGTTGGCTTAGGCGTACGGAGTTCATTCCA
129 TCC-GGCTGCTGAGCG-CCGCGCGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCA
*
32683258 TGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCAAG
192 TGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAAG
* * *
32683323 ACTAGCAGCAGGATCGACAGCACGCAGGGGGGGACCAGGTCGATCCCTGGCTTACGCATTCTATC
257 ACCAGCAGCAGGATCGACAGCACGCAGGGGGGGACCAGGTCGATCCCTGGCTTACACATTCTACC
* ** * * *
32683388 TCTCTGGCTGGCTGAGCTCCCGCACACTCTTTTCGTGGGTTGGCTTAGGCATACGAATTTCATTC
322 TCTCCGGCTGGCTGAGCTCCAACACACTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTC
* *
32683453 CATCTCTTAGCCCCAGCTAGACCGAGGGTTGTGGCAGCAGGACCGATAGCGGGATCGACAGCATG
387 CATCTCTTAGCCCCAGCTAGACCGAGGGTTGTGGAAGCAAGACCGATAGCGGGATCGACAGCATG
* * *
32683518 CAGAAGGGGACCAACTGATCCCAACTTGCGCATTATGCCTCTTCGACCAGCTGAGCTCCCATACG
452 CAGAAGGGGACCAACTGATCCCAACTTGCGCATTATGCCTCTTCGACCAGCTGACCACCCACACG
* * * * * **
32683583 CTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCCTCGCCAGTCTAAGATCGGACCGGACTGAG
517 CTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGATCGGACCAGACCAAG
** * * **** * *
32683648 GGTTTTGGCAACAGGATCGACAGTACGCAGGGGGCGATTGGGCCGATCCCTAACTTGCGCATTCT
582 GGTTGCGGCAACAGGATCGACAGCACACAGGGGGCGACCAAGCCGATCCCCAACTTGCACATTCT
* *
32683713 GCCTCTCTGGTCGGCTGAGCACCCGCATGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCA
647 ACCTCTCTGGTCGGCTGAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCA
* * * * * *
32683778 TTCCATGTCTAAGCCCCAGTCGGACCGAAGGTTGTGGTAGCGGGACCAGTAGCACCCAAAGGGGG
712 TTCCATGTCCAAGCCCCAGACCGACCGAAGGTTGTGGTAACAGGACCAGTAGCACACAAAGGGGG
* * ** * *** ** *** ** * *
32683843 ATCGGGCTGATCTTCGACTTACGTATTATGCCTCTTTGGCTGGCTCAGTGCCCGTACGTTTG
777 ATCGAGCCGATCCCCGACTTACGCATTATGCCTCTCAAGCCAGCTCAACACCCACACGCTCG
* * *
32683905 TTTCATGGGTTGACTTATGCATACGGAGTTCATTCCCAATCTAAGATCAGATCGGACCAAGGGTT
1 TTTCATGGGTTGACTTATGCATACGGAGTTCATTCCTAATCTAAGATCAGATCGGATCGAGGGTT
* * * * * * * *
32683970 G-TGATAGCAGTATCGATAGCACATAGGGGGATCGAG-CTGATCCCCGACTTTCGTATTCTACCT
66 GCGGA-AGCAGGATCGACAGCACA-AGGGGGATCGGGTC-GACCCCCGACTTCCGCATTCTGCCT
** * * * *
32684033 CTCCGGCTGGCTGAGCGCCTGTACACTCATTTCTTGGGTTGGCTTAGGCATACAGAGTTCATTCC
128 CTCCGGCT-GCTGAGCGCC-GCGCGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCC
*
32684098 CTGTCTAAG
191 ATGTCTAAG
32684107 ATCAGACAGG
Statistics
Matches: 873, Mismatches: 146, Indels: 50
0.82 0.14 0.05
Matches are distributed among these distances:
839 24 0.03
840 31 0.04
841 484 0.55
842 322 0.37
843 12 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (838 bp):
TTTCATGGGTTGACTTATGCATACGGAGTTCATTCCTAATCTAAGATCAGATCGGATCGAGGGTT
GCGGAAGCAGGATCGACAGCACAAGGGGGATCGGGTCGACCCCCGACTTCCGCATTCTGCCTCTC
CGGCTGCTGAGCGCCGCGCGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAAGACCA
GCAGCAGGATCGACAGCACGCAGGGGGGGACCAGGTCGATCCCTGGCTTACACATTCTACCTCTC
CGGCTGGCTGAGCTCCAACACACTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATC
TCTTAGCCCCAGCTAGACCGAGGGTTGTGGAAGCAAGACCGATAGCGGGATCGACAGCATGCAGA
AGGGGACCAACTGATCCCAACTTGCGCATTATGCCTCTTCGACCAGCTGACCACCCACACGCTCA
TTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGATCGGACCAGACCAAGGGTT
GCGGCAACAGGATCGACAGCACACAGGGGGCGACCAAGCCGATCCCCAACTTGCACATTCTACCT
CTCTGGTCGGCTGAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCC
ATGTCCAAGCCCCAGACCGACCGAAGGTTGTGGTAACAGGACCAGTAGCACACAAAGGGGGATCG
AGCCGATCCCCGACTTACGCATTATGCCTCTCAAGCCAGCTCAACACCCACACGCTCG
Found at i:32683272 original size:26 final size:26
Alignment explanation
Indices: 32683242--32683291 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
32683232 GGCTTAGGCG
32683242 TACGGAGTTCATT-CCATGTCTAAGCA
1 TACGGAGTTCATTCCCA-GTCTAAGCA
32683268 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
32683292 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCA
Found at i:32683875 original size:159 final size:157
Alignment explanation
Indices: 32683712--32684140 Score: 404
Period size: 157 Copynumber: 2.7 Consensus size: 157
32683702 TTGCGCATTC
* * * * *
32683712 TGCCTCTCTGG-TCGGCTGAGCACCCGCATGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTT
1 TGCCTCTCTGGCT-GGCTGAGCGCCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTT
* * *
32683776 CATTCCATGTCTAAGCCCCAG-TCGGACCGAA-GGTTGTGGTAGCGGGACC-AGTAGCACCCAAA
65 CATTCCATGTCTAAG-ACCAGATCGGACC-AAGGGTTGTGATAGCAGGACCGA-TAGCA--CAAA
* **
32683838 GGGGGATCGGGCTGATCTTCGACTTACGTATTA
125 GGGGGATCGAGCTGATCCCCGACTTACGTATTA
* * * * * * *
32683871 TGCCTCTTTGGCTGGCTCAGTGCCCGTACGTTTGTTTCATGGGTTGACTTATGCATACGGAGTTC
1 TGCCTCTCTGGCTGGCTGAGCGCCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTC
* * * * *
32683936 ATTCCCA-ATCTAAGATCAGATCGGACCAAGGGTTGTGATAGCAGTATCGATAGCACATAGGGGG
66 ATT-CCATGTCTAAGACCAGATCGGACCAAGGGTTGTGATAGCAGGACCGATAGCACAAAGGGGG
* *
32684000 ATCGAGCTGATCCCCGACTTTCGTATTC
130 ATCGAGCTGATCCCCGACTTACGTATTA
* * * * * * *
32684028 TACCTCTCCGGCTGGCTGAGCGCCTGTACACTCATTTCTTGGGTTGGCTTAGGCATACAGAGTTC
1 TGCCTCTCTGGCTGGCTGAGCGCCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTC
* * * *
32684093 ATTCCCTGTCTAAGATCAGA-CAGGATCAAGGGTTG-CAGTAGCAGGACC
66 ATTCCATGTCTAAGACCAGATC-GGACCAAGGGTTGTGA-TAGCAGGACC
32684141 AGCAGTAGGA
Statistics
Matches: 217, Mismatches: 45, Indels: 18
0.77 0.16 0.06
Matches are distributed among these distances:
156 4 0.02
157 117 0.54
158 5 0.02
159 86 0.40
160 5 0.02
ACGTcount: A:0.20, C:0.25, G:0.28, T:0.27
Consensus pattern (157 bp):
TGCCTCTCTGGCTGGCTGAGCGCCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTC
ATTCCATGTCTAAGACCAGATCGGACCAAGGGTTGTGATAGCAGGACCGATAGCACAAAGGGGGA
TCGAGCTGATCCCCGACTTACGTATTA
Found at i:32684438 original size:26 final size:26
Alignment explanation
Indices: 32684408--32684459 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
32684398 TTGACTTAGC
32684408 CATACAGAGTTCATCCCCAGTCTAAG
1 CATACAGAGTTCATCCCCAGTCTAAG
* * *
32684434 CATACAGATTTCATTCCTAGTCTAAG
1 CATACAGAGTTCATCCCCAGTCTAAG
32684460 ATCGAACCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.27, G:0.13, T:0.29
Consensus pattern (26 bp):
CATACAGAGTTCATCCCCAGTCTAAG
Found at i:32684817 original size:158 final size:158
Alignment explanation
Indices: 32684433--32684830 Score: 412
Period size: 158 Copynumber: 2.5 Consensus size: 158
32684423 CCCAGTCTAA
* * * * * * *
32684433 GCATACAGATTTCATTCCTAGTCTAAGATCGAACCAAACTGAGGGTTGCGACAGCAGGATCGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGTGACAGTAGGATCGACA
* * ** * **
32684498 GCATGCAGGGGGGACCGGACCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGACTGAGCGCC
66 GCACGTAGGGGGGACCGGACCGATCCCCAGCTTGCGCATTATGCCTCTCCAATCGACTGAGCGCC
*
32684563 CGCACGCCTGATTCGTGGGTTGGCTTAG
131 CGCACGCCTGATTCGTGGGTTGACTTAG
* ** * * * *
32684591 GCAT-CGGGAGTTCATT-CCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGATAGT-GAGACCG
1 GCATAC-AGAGTTCATTCCCA-GTCTAAGATCAAACCAGACCGAGGGTTGTGACAGTAG-GATCG
* * * *
32684653 ATAGCACGTAGAGGGGGACCAGG-CC-ATCCCCAGCTTGCGCATTATGCCTCTCCAATTGGCTTA
63 ACAGCACGTAG-GGGGGACC-GGACCGATCCCCAGCTTGCGCATTATGCCTCTCCAATCGACTGA
* * *
32684716 GTGCCCGCACG-CTCGTTTCGTGGGTTGACTTAT
126 GCGCCCGCACGCCT-GATTCGTGGGTTGACTTAG
* *
32684749 GCATACAGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGTGGCAGTAGGATAGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGTGACAGTAGGATCGACA
*
32684814 GCACATAGGGGGGACCG
66 GCACGTAGGGGGGACCG
32684831 AGCTGATCCC
Statistics
Matches: 192, Mismatches: 39, Indels: 20
0.76 0.16 0.08
Matches are distributed among these distances:
156 1 0.01
157 14 0.07
158 160 0.83
159 15 0.08
160 2 0.01
ACGTcount: A:0.22, C:0.27, G:0.29, T:0.22
Consensus pattern (158 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGTGACAGTAGGATCGACA
GCACGTAGGGGGGACCGGACCGATCCCCAGCTTGCGCATTATGCCTCTCCAATCGACTGAGCGCC
CGCACGCCTGATTCGTGGGTTGACTTAG
Found at i:32684938 original size:26 final size:26
Alignment explanation
Indices: 32684902--32684954 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
32684892 GTTGGCTTAG
32684902 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
32684928 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
32684954 G
1 G
32684955 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:32685658 original size:26 final size:26
Alignment explanation
Indices: 32685628--32685680 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
32685618 GTTGACTTAG
*
32685628 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
32685654 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
32685680 G
1 G
32685681 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:32686865 original size:26 final size:26
Alignment explanation
Indices: 32686835--32686887 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
32686825 GTTGACTTAG
32686835 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
32686861 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
32686887 G
1 G
32686888 ATTGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:32687656 original size:159 final size:159
Alignment explanation
Indices: 32687424--32688012 Score: 539
Period size: 159 Copynumber: 3.7 Consensus size: 159
32687414 AGTACAATCA
* * * * * * * *
32687424 GCAGCACGCA-AGGGGGATCGGG-CTGATCCCTGGCTTGTGCATTCTGCCTCTCCGACCGGCTGA
1 GCAGCACGCAGAGGGGGACCGGGTC-GATCCCCGGCTTGCGCATTATGCCTCTTCGGCCGACTCA
* * * *
32687487 GCACCCGCACGCCCATTTCATGGGTTGGCTTAGGAATAGGGAGTTCATTCCATGTCTAAGCCCCA
65 GCACCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCA
*
32687552 GCAAGATTGAGGGTTGTGGCAGCAGGACCG
130 GCAAGATTGAGGGTTGTGGCAGCAGGATCG
* * * * *
32687582 GTAGCACGCAGAAGGGGACCGGGTCGATCCTCGACTTGTGCATTATGCCTCTTCGGCCGACTCAG
1 GCAGCACGCAGAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTTCGGCCGACTCAG
* * * **
32687647 CACCTGCACGCTCATTTCATGGGTTGACTTATGCATACAGAGTTCATTCCCA-GTCTAAG-ATCA
66 CACCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCA
* * *
32687710 G-ATCGGATTGAGGGTT-TCGTAGCAGGATCG
130 GCA--AGATTGAGGGTTGTGGCAGCAGGATCG
* * ** * ** *
32687740 ACAGCACGTAG-GGGGGACTAGG-CGGATCCCCGGCTTGCGCATTCTGCCTCAACGGCC-AGCTG
1 GCAGCACGCAGAGGGGGACCGGGTC-GATCCCCGGCTTGCGCATTATGCCTCTTCGGCCGA-CTC
* * * * * * * *
32687802 AGCGCCCGTACACTCGTTGCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCC
64 AGCACCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCC
* * * ** *
32687867 AGCCAGACTGAGGGATGTGGCAGTGGGATCA
129 AGCAAGATTGAGGGTTGTGGCAGCAGGATCG
* * * * *
32687898 GCAGCATGCAGAGGGGGATCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTTCGGCAGGCTCAA
1 GCAGCACGCAGAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTTCGGCCGACTCAG
** * * *
32687963 TGCCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCC
66 CACCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCC
32688013 CAGTCAAAGA
Statistics
Matches: 338, Mismatches: 79, Indels: 27
0.76 0.18 0.06
Matches are distributed among these distances:
156 5 0.01
157 93 0.28
158 51 0.15
159 184 0.54
160 5 0.01
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (159 bp):
GCAGCACGCAGAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTTCGGCCGACTCAG
CACCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAG
CAAGATTGAGGGTTGTGGCAGCAGGATCG
Found at i:32687998 original size:316 final size:318
Alignment explanation
Indices: 32687448--32688181 Score: 927
Period size: 316 Copynumber: 2.3 Consensus size: 318
32687438 GGATCGGGCT
* * * *
32687448 GATCCCTGGCTTGTGCATTCTGCCTCTCCGACCGGCTGAGCACCCGCACGCCCATTTCATGGGTT
1 GATCCCTGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTT
* * *
32687513 GGCTTAGGAATAGGGAGTTCATTCCATGTCTAAGCCCCAGCAAGATTGAGGGTTGTGGCAGCAGG
66 GGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCAAGACTGAGGGATGTGGCAGCAGG
* * * * *
32687578 ACCGGTAGCACGCAGAAGGGGACCGGGTCGATCCTCGACTTGTGCATTATGCCTCTTCGGCCGAC
131 ACCAGCAGCACGCAGAAGGGGACCGGGTCGATCCCCGACTTGCGCATTATGCCTCTTCGGCAGAC
*
32687643 TCAGCACCTGCACGCTCATTTCATGGGTTGACTTATGCATACAGAGTTCATTCCCAGTCTAAGAT
196 TCAGCACCTGCACGCTCATTTCATGGGTTGACTTATGCATACAGAGTTCATTCCCAGTCAAAGAT
* *** * ** * * * *
32687708 CAGATCGGATTGAGGGTT-TCGTAGCAGGATCGACAGCACGTA-GGGGGGACTAGGCG
261 CAGACCGGACCAAGGGTTGCCAAAGCAGGATCGACAGCACATAGGGGGGGACCAAGCC
* ** * * * * * *
32687764 GATCCCCGGCTTGCGCATTCTGCCTCAACGGCCAGCTGAGCGCCCGTACACTCGTTGCGTGGGTT
1 GATCCCTGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTT
* **
32687829 GGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACTGAGGGATGTGGCAGTGGG
66 GGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCAAGACTGAGGGATGTGGCAGCAGG
* * * * * *
32687894 ATCAGCAGCATGCAGAGGGGGATCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTTCGGCAGGC
131 ACCAGCAGCACGCAGAAGGGGACCGGGTCGATCCCCGACTTGCGCATTATGCCTCTTCGGCAGAC
* * *
32687959 TCAATGC-CC-GCACGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCAAAG
196 TC-A-GCACCTGCACGCTCATTTCATGGGTTGACTTATGCATACAGAGTTCATTCCCAGTCAAAG
* * * *
32688022 ATCAGACCGGACCAAGGGTTGCCAAAGTAGGATTGATAGTACATAGGGGGGGACCAAGCC
259 ATCAGACCGGACCAAGGGTTGCCAAAGCAGGATCGACAGCACATAGGGGGGGACCAAGCC
* * * * *
32688082 AATCCTTGGCTTGCGTATTCTACCTCTCCGACCGGTTGAGCACCCGCACGCTCGTTTCGTGGGTT
1 GATCCCTGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTT
*
32688147 GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
66 GGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
32688182 ATACGGAGTT
Statistics
Matches: 350, Mismatches: 64, Indels: 6
0.83 0.15 0.01
Matches are distributed among these distances:
316 233 0.67
317 19 0.05
318 98 0.28
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (318 bp):
GATCCCTGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTT
GGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCAAGACTGAGGGATGTGGCAGCAGG
ACCAGCAGCACGCAGAAGGGGACCGGGTCGATCCCCGACTTGCGCATTATGCCTCTTCGGCAGAC
TCAGCACCTGCACGCTCATTTCATGGGTTGACTTATGCATACAGAGTTCATTCCCAGTCAAAGAT
CAGACCGGACCAAGGGTTGCCAAAGCAGGATCGACAGCACATAGGGGGGGACCAAGCC
Found at i:32688073 original size:159 final size:156
Alignment explanation
Indices: 32687595--32688180 Score: 425
Period size: 159 Copynumber: 3.7 Consensus size: 156
32687585 GCACGCAGAA
* * * * * * * * *
32687595 GGGGACCGGGTCGATCCTCGACTTGTGCATTATGCCTCTTCGGCCGACTCAGCACCTGCACGCTC
1 GGGGACCAGGTCGATCCCCGGCTTGCGCATTATGCCTCTTCGGCAGGCTCAACGCCCGCACGCTC
* * * * * *
32687660 ATTTCATGGGTTGACTTATGCATACAGAGTTCATTCCCAGTCTAAGATCAGATCGGATTGAGGGT
66 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGT
* * * * *
32687725 TTCGTAGCAGGATCGACAGCACGTA-GG
131 TGC-CAGTAGGAT-GATAGCACATAGGG
* * ** * * * *
32687752 GGGGACTAGG-CGGATCCCCGGCTTGCGCATTCTGCCTCAACGGCCA-GCTGAGCGCCCGTACAC
1 GGGGACCAGGTC-GATCCCCGGCTTGCGCATTATGCCTCTTCGG-CAGGCTCAACGCCCGCACGC
* * * ** *
32687815 TCGTTGCGTGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCAGACTGA
64 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACTGA
* *
32687878 GGGATGTGGCAGT-GG--GATCAGCAGCATGCAGAG
127 GGG-T-TGCCAGTAGGATGAT-AGCA-CAT--AGGG
* * *
32687911 GGGGATCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTTCGGCAGGCTCAATGCCCGCACGCTC
1 GGGGACCAGGTCGATCCCCGGCTTGCGCATTATGCCTCTTCGGCAGGCTCAACGCCCGCACGCTC
* * **
32687976 GTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCAAAGATCAGACCGGACCAAGGGT
66 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGT
*
32688041 TGCCAAAGTAGGATTGATAGTACATAGGG
131 TGCC--AGTAGGA-TGATAGCACATAGGG
* * * ** * * * * * * * * * *
32688070 GGGGACCAAGCCAATCCTTGGCTTGCGTATTCTACCTCTCCGACCGGTTGAGCACCCGCACGCTC
1 GGGGACCAGGTCGATCCCCGGCTTGCGCATTATGCCTCTTCGGCAGGCTCAACGCCCGCACGCTC
*
32688135 GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAG
66 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG
32688181 CATACGGAGT
Statistics
Matches: 328, Mismatches: 79, Indels: 42
0.73 0.18 0.09
Matches are distributed among these distances:
154 2 0.01
155 4 0.01
156 6 0.02
157 95 0.29
158 17 0.05
159 189 0.58
160 6 0.02
161 3 0.01
162 3 0.01
163 3 0.01
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (156 bp):
GGGGACCAGGTCGATCCCCGGCTTGCGCATTATGCCTCTTCGGCAGGCTCAACGCCCGCACGCTC
GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGT
TGCCAGTAGGATGATAGCACATAGGG
Found at i:32688190 original size:26 final size:26
Alignment explanation
Indices: 32688154--32688206 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
32688144 GTTGGCTTAG
32688154 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
32688180 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
32688206 G
1 G
32688207 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:32688923 original size:26 final size:26
Alignment explanation
Indices: 32688887--32688939 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
32688877 GTTGACTTAG
32688887 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
32688913 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
32688939 G
1 G
32688940 ATCGAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:32691579 original size:26 final size:26
Alignment explanation
Indices: 32691549--32691600 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
32691539 GTTGACTTAG
32691549 GCATAC-AGAGTTCATCCCTAGTCTAA
1 GCATACGA-AGTTCATCCCTAGTCTAA
* *
32691575 GCATACGAAGTTCTTTCCTAGTCTAA
1 GCATACGAAGTTCATCCCTAGTCTAA
32691601 AATTGAACCA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.31
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCTAGTCTAA
Found at i:32691636 original size:197 final size:197
Alignment explanation
Indices: 32691301--32691682 Score: 451
Period size: 197 Copynumber: 1.9 Consensus size: 197
32691291 AGCGTATTCT
* * * * **
32691301 ACCTCTCCGATCGATTGAGCACCCGTACACTCGTTTCGTGGGTTGGCTTAGGCTTATGGAGTTCA
1 ACCTCTCCGATCGACTGAGCACCCGTACACTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCA
* * *** *
32691366 TTCCATGTCCAAGCATACGAAGTTCATTCCCAGTCTAAGATCAAACTGGATCGAAGGTTACGGCA
66 TCCCATGTCCAAGCATACGAAGTTCATTCCCAGTCTAAAATCAAACCACACCGAAGGTTACGGCA
* * ** * **
32691431 GTAGGATCGATAGTATGCATGGGGGACCGGGCCAATCCCCGGCTTGTGCATTCTGCCTCTTCGGC
131 GCAGGATCGATAGCACACAAGGGGGACCGGGCCAATCCCCGGCTTACGCATTCTGCCTCTTCGGC
32691496 CG
196 CG
* * * *
32691498 ACCTCTCTGATCGGCTGAGCGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCA
1 ACCTCTCCGATCGACTGAGCACCCGTACACTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCA
* * * ** * *
32691563 TCCC-TAGTCTAAGCATACGAAGTTCTTTCCTAGTCTAAAATTGAACCACACCGATGGTTGCGGC
66 TCCCAT-GTCCAAGCATACGAAGTTCATTCCCAGTCTAAAATCAAACCACACCGAAGGTTACGGC
* * *
32691627 AGCAGGATCGATAGCACACAAGGGGGACTGTGCCGATCCCCGGCTTACGCATTCTG
130 AGCAGGATCGATAGCACACAAGGGGGACCGGGCCAATCCCCGGCTTACGCATTCTG
32691683 TCTTTCCGGT
Statistics
Matches: 151, Mismatches: 33, Indels: 2
0.81 0.18 0.01
Matches are distributed among these distances:
196 1 0.01
197 150 0.99
ACGTcount: A:0.22, C:0.27, G:0.26, T:0.26
Consensus pattern (197 bp):
ACCTCTCCGATCGACTGAGCACCCGTACACTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCA
TCCCATGTCCAAGCATACGAAGTTCATTCCCAGTCTAAAATCAAACCACACCGAAGGTTACGGCA
GCAGGATCGATAGCACACAAGGGGGACCGGGCCAATCCCCGGCTTACGCATTCTGCCTCTTCGGC
CG
Found at i:32691943 original size:26 final size:26
Alignment explanation
Indices: 32691892--32691943 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
32691882 GTTGGCTTAG
* * *
32691892 GCATAGGGAGTTCATTTCATGTCTAA
1 GCATACGGAGTTCATTCCATGCCTAA
32691918 GCATACGGAGTTCATTCCCA-GCCTAA
1 GCATACGGAGTTCATT-CCATGCCTAA
32691944 AATTTTGAGC
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
26 20 0.91
27 2 0.09
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGCCTAA
Found at i:32692034 original size:11 final size:11
Alignment explanation
Indices: 32692014--32692046 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
32692004 CTTGGGGCAC
32692014 CATCGTCGGAG
1 CATCGTCGGAG
*
32692025 CATTGTCGGAG
1 CATCGTCGGAG
32692036 CATCGTCGGAG
1 CATCGTCGGAG
32692047 AGCGTAACCG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.18, C:0.24, G:0.36, T:0.21
Consensus pattern (11 bp):
CATCGTCGGAG
Found at i:32692661 original size:26 final size:26
Alignment explanation
Indices: 32692625--32692674 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
32692615 GTTGATTTAG
*
32692625 GCATACGGAGTTCATCCCCAATCTTA
1 GCATACCGAGTTCATCCCCAATCTTA
*
32692651 GCATACCGAGTTCATTCCCAATCT
1 GCATACCGAGTTCATCCCCAATCT
32692675 AAGATCGAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.32, G:0.14, T:0.28
Consensus pattern (26 bp):
GCATACCGAGTTCATCCCCAATCTTA
Found at i:32693240 original size:26 final size:26
Alignment explanation
Indices: 32693190--32693240 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
32693180 GTTGACTTAG
*
32693190 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
**
32693216 GCATACGGAGTTCATTTCCAATCTA
1 GCATACGGAGTTCATCCCCAATCTA
32693241 TGATCAGACC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:32697191 original size:26 final size:26
Alignment explanation
Indices: 32697161--32697213 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32697151 GTTGGCTTAG
32697161 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
32697187 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
32697213 G
1 G
32697214 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:32698395 original size:158 final size:157
Alignment explanation
Indices: 32697921--32698413 Score: 504
Period size: 158 Copynumber: 3.1 Consensus size: 157
32697911 CCTAGTCTAA
* * * * *
32697921 GCATACAGAGTTCATTCTTAGTCTAAGATTAGACCGGATCGAGGGTTGCGGCAGCAGGATCGATA
1 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACA
* * * * * * * * *
32697986 GCGCGTAGGGGGGACCGAGCCGATCCCCGACTTACGCATTCTACCTCTCCGGTCGGCTGAGCGCC
66 GCACGCAAGGGGGATCGAGCTGATCCCAG-CTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCC
* * *
32698051 CACACGCCCGTTTTGTGGGTTGGCTTAG
130 CGCACGCTCGTTTCGTGGGTTGGCTTAG
* ** * * * * * *
32698079 GCATAGGGAGTTCATTCC-ATGTCTAAGCCCCAG-TCGGACCGAGAGTTGTGGCAGCGGGATGGG
1 GCATACGGAGTTCATTCCTA-GTCTAAG-ATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGA
* * * * * ** * *
32698142 CAGCACACAGAGGGGGATCGAGCTGATCCCCGGCTTGCACATTATGCCTCTTCAACTGGCTCAGC
64 CAGCACGCA-AGGGGGATCGAGCTGAT-CCCAGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGC
* *
32698207 GCCCGCACGCTCATTTCGTGGGTTGACTTAG
127 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * *
32698238 GCATATGGAGTTCATTCCTAGTATAAGATCAGACCGAACCAAGGGTTACGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACA
* * *
32698303 GCACGCAAGGGCGATCGAGCTGATCCTCAGCTTGCGCATTCTGCATCTCCGGCCGGCTGAGCTCC
66 GCACGCAAGGGGGATCGAGCTGATCC-CAGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCC
*
32698368 CGCACGCTCGTTTCATGGGTTGGCTTAG
130 CGCACGCTCGTTTCGTGGGTTGGCTTAG
32698396 GCATACGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
32698414 ATGTTTAAGC
Statistics
Matches: 263, Mismatches: 65, Indels: 14
0.77 0.19 0.04
Matches are distributed among these distances:
157 3 0.01
158 139 0.53
159 116 0.44
160 5 0.02
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACA
GCACGCAAGGGGGATCGAGCTGATCCCAGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCC
GCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:32698729 original size:158 final size:158
Alignment explanation
Indices: 32698562--32698921 Score: 366
Period size: 158 Copynumber: 2.3 Consensus size: 158
32698552 TGCATGACCG
* * * *
32698562 TTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAACCCCTG-TCAAATTGAGGGTT
1 TTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAACACCAGACCAAACTGAGGGTT
* * * ** * *
32698626 GTGGCAGCGGGACCGGTAGGACACAGAGGGGGACTGGGCCGATCCCCGGCTTATGCATTAT-GCC
66 GTGGCAGCAGGACCGATAGCACACAG-GGGGGACCAGGCCGATCCCCGACTTAAGCATTATAG-C
* **
32698690 TCTTCGATCGGCTCAGCGCCCGCACGCTTA
129 TCTCCGATCGGCTCAGCGCCCGCACGCCCA
** * * * * * * * * *
32698720 TTTTGTGGGTTGACTTATGCATACGTAGTTCATTCCCA-GACTAAGATCAGACCAGACTGAGTGT
1 TTTCATGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAACACCAGACCAAACTGAGGGT
* ** * *
32698784 TGTGGCAGCAGGATCGATAGCATGCTGGGGGGACCAGGCCGATCCCCGACTTAAGCATTCTAGCT
65 TGTGGCAGCAGGACCGATAGCACACAGGGGGGACCAGGCCGATCCCCGACTTAAGCATTATAGCT
* * * *
32698849 CTCCGGTTGGCTGAGCGCCCGCACGCCCG
130 CTCCGATCGGCTCAGCGCCCGCACGCCCA
32698878 TTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
1 TTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
32698922 GCATACGGAA
Statistics
Matches: 157, Mismatches: 41, Indels: 8
0.76 0.20 0.04
Matches are distributed among these distances:
157 3 0.02
158 121 0.77
159 33 0.21
ACGTcount: A:0.19, C:0.25, G:0.30, T:0.26
Consensus pattern (158 bp):
TTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAACACCAGACCAAACTGAGGGTT
GTGGCAGCAGGACCGATAGCACACAGGGGGGACCAGGCCGATCCCCGACTTAAGCATTATAGCTC
TCCGATCGGCTCAGCGCCCGCACGCCCA
Found at i:32698872 original size:500 final size:501
Alignment explanation
Indices: 32697852--32698936 Score: 1292
Period size: 500 Copynumber: 2.2 Consensus size: 501
32697842 TTACCCCTCT
** * * * * *
32697852 GGTTGGCTGAATGCTCGCATGCTCGTTTCGTGGGTTGACTTAGGCATATC-GAGTTCA-TCCCTA
1 GGTTGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATA-CGGAGTTCATTCCAT-
* * * * *
32697915 GTCTAAGCATACAGAGTTCATTCTTAGTCTAAGATTAGACCGGATCGAGGGTTGCGGCAGCAGGA
64 GTCTAAGCATACAGAGTTCATGCCTAGTCTAAAATCAGACCGGATCGAGGGTTGCAGCAGCAGGA
* * * * *
32697980 TCGATAGCGCGTAGGGGGGACCGAGCCGATCCCCGACTTACGCATTCTACCTCTCCGGTCGGCTG
129 TCGACAGCACGTAGGGGGCACCGAGCCGATCCCCGACTTACGCATTCTACCTCTCCGGCCAGCTG
* **
32698045 AGCGCCCACACGCCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCC
194 AGCGCCCACACGACCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCC
** ** *
32698110 AGTCGGACCGAGAGTTGTGGCAGCGGGATGGGCAGCACACAGAGGGGGATCGAGCTGATCCCCGG
259 AGTCAAACCGAGAGTTGTGGCAGCGGGACCGGCAGCACACAGAGGGGGATCGAGCCGATCCCCGG
*
32698175 CTTGCACATTATGCCTCTTCAACTGGCTCAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGC
324 CTTACACATTATGCCTCTTCAACTGGCTCAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGC
* *
32698240 ATATGGAGTTCATTCCTAGTATAAGATCAGACCGAACCAAGGGTTACGGCAGCAGGATCGACAGC
389 ATACGGAGTTCATTCCCAGTATAAGATCAGACCGAACCAAGGGTTACGGCAGCAGGATCGACAGC
* * * **
32698305 ACGCAAGGGCGATCGAGCTGATCCTCAGCTTGCGCATTCTGCATCTCC
454 ACGCAAGGGCGACCGAGCCGATCCCCAGCTTAAGCATTCTGCATCTCC
** *
32698353 GGCCGGCTGAGCTCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
1 GGTTGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
* * * *
32698418 TTAAGCATACAGAGTTGATGCCTAGTCTAAAATCGGATCGGATCGAGGGTTGCAGCAGTC-GGAT
66 CTAAGCATACAGAGTTCATGCCTAGTCTAAAATCAGACCGGATCGAGGGTTGCAGCAG-CAGGAT
* * * * * * * *
32698482 CGACAGCATGTAGGGGGCACCGGGCCGATGCCTGGCTTGCGCATTTTGCCTCTCCGGCCAGCTGA
130 CGACAGCACGTAGGGGGCACCGAGCCGATCCCCGACTTACGCATTCTACCTCTCCGGCCAGCTGA
** * *
32698547 GCGCCTGCATGACCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA-CCCCT
195 GCGCCCACACGACCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA
** * * * *
32698611 GTCAAATTGAGGGTTGTGGCAGCGGGACCGGTAGGACACAGAGGGGGA-CTGGGCCGATCCCCGG
260 GTCAAACCGAGAGTTGTGGCAGCGGGACCGGCAGCACACAGAGGGGGATC-GAGCCGATCCCCGG
** * * * *
32698675 CTTATGCATTATGCCTCTTCGA-TCGGCTCAGCGCCCGCACGCTTATTTTGTGGGTTGACTTATG
324 CTTACACATTATGCCTCTTCAACT-GGCTCAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGG
* ** * ** *
32698739 CATACGTAGTTCATTCCCAG-ACTAAGATCAGACC-AGACTGAGTGTTGTGGCAGCAGGATCGAT
388 CATACGGAGTTCATTCCCAGTA-TAAGATCAGACCGA-ACCAAGGGTTACGGCAGCAGGATCGAC
* ** *
32698802 AGCATGCTGGGGGGACC-AGGCCGATCCCC-GACTTAAGCATTCTAGC-TCTCC
451 AGCACGCAAGGGCGACCGA-GCCGATCCCCAG-CTTAAGCATTCT-GCATCTCC
* *
32698853 GGTTGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGT
1 GGTTGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
* *
32698918 CTAAGCATACGGAATTCAT
66 CTAAGCATACAGAGTTCAT
32698937 TTCCAGTCTA
Statistics
Matches: 490, Mismatches: 84, Indels: 21
0.82 0.14 0.04
Matches are distributed among these distances:
499 6 0.01
500 271 0.55
501 208 0.42
502 5 0.01
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (501 bp):
GGTTGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
CTAAGCATACAGAGTTCATGCCTAGTCTAAAATCAGACCGGATCGAGGGTTGCAGCAGCAGGATC
GACAGCACGTAGGGGGCACCGAGCCGATCCCCGACTTACGCATTCTACCTCTCCGGCCAGCTGAG
CGCCCACACGACCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG
TCAAACCGAGAGTTGTGGCAGCGGGACCGGCAGCACACAGAGGGGGATCGAGCCGATCCCCGGCT
TACACATTATGCCTCTTCAACTGGCTCAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCAT
ACGGAGTTCATTCCCAGTATAAGATCAGACCGAACCAAGGGTTACGGCAGCAGGATCGACAGCAC
GCAAGGGCGACCGAGCCGATCCCCAGCTTAAGCATTCTGCATCTCC
Found at i:32698926 original size:26 final size:26
Alignment explanation
Indices: 32698896--32698948 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
32698886 GTTGGCTTAG
* *
32698896 GCATAGGGAGTTCA-TTCCATGTCTAA
1 GCATACGGAATTCATTTCCA-GTCTAA
32698922 GCATACGGAATTCATTTCCAGTCTAA
1 GCATACGGAATTCATTTCCAGTCTAA
32698948 G
1 G
32698949 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAATTCATTTCCAGTCTAA
Found at i:32699962 original size:26 final size:26
Alignment explanation
Indices: 32699932--32699984 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
32699922 GTTGGCTTAG
32699932 GCATAC-AGAGTTCATT-CCATGTCTAA
1 GCATACGA-AGTTCATTCCCA-GTCTAA
32699958 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
32699984 G
1 G
32699985 ATCGAACCGC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:32700891 original size:26 final size:25
Alignment explanation
Indices: 32700856--32700907 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 25
32700846 GTTGACTTAG
*
32700856 GCATAGGAGTTCA-TCCCTAGTCTAA
1 GCATAGGAGTCCATTCCC-AGTCTAA
32700881 GCATATGGAGTCCATTCCCAGTCTAA
1 GCATA-GGAGTCCATTCCCAGTCTAA
32700907 G
1 G
32700908 ATTGGATCCG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
25 5 0.21
26 15 0.62
27 4 0.17
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (25 bp):
GCATAGGAGTCCATTCCCAGTCTAA
Found at i:32702062 original size:26 final size:26
Alignment explanation
Indices: 32702032--32702084 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
32702022 GTTGACTTAG
32702032 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* **
32702058 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
32702084 G
1 G
32702085 ATTGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:32702697 original size:159 final size:159
Alignment explanation
Indices: 32702399--32702836 Score: 355
Period size: 159 Copynumber: 2.8 Consensus size: 159
32702389 CAGGATCGGT
* * * * ** * * * * * *
32702399 AGCACGCAGGGGGGATCGGGCCGATCCCCGGCTTGCGCAATCTGCCTCTCCGACCGGCAAAGTGC
1 AGCACGTAGGGGGGACCGAGCCAATCCCCAACTTGCGCATTATGCCTCTTCGACCTGCTAAGCGC
** * * * * ** * * ** * *
32702464 CCGTTCGCTCGTTTCTTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTGTAAG-CCCCAGCC
66 CCGCACACTCGTTTCATGAGTTGACTTAGGCATACAGAGTTCATTCCATGTCTAAGATCGGATCA
** * *
32702528 GAATCGAGGGTTGTGGCAATGGGACCGGC
131 GAATCGAGGGTTGCAGCAATAGGACCGAC
* * *** * *
32702557 AGCACGTAGAGGGGGACCGAGTCGATCCCTGGCTTGCGCATTATGCCTCTTTG-GCTGGCTCAA-
1 AGCACGTAG-GGGGGACCGAGCCAATCCCCAACTTGCGCATTATGCCTCTTCGACCT-GCT-AAG
* * *
32702620 CGCCCGCACGCTCGTTTCGTGAGTTGACTTATGCATACAGAGTTCATTCCCA-GTCTAAGATCGG
63 CGCCCGCACACTCGTTTCATGAGTTGACTTAGGCATACAGAGTTCATT-CCATGTCTAAGATCGG
* *
32702684 ATCAGAAT-GAGGGTTGCAGCAGTAGGATCGAC
127 ATCAGAATCGAGGGTTGCAGCAATAGGACCGAC
** * *
32702716 AGCACGTAGGGGGGATTGGGCCAATCCCCAACTTGCGCATTCTGCCTCTTCGACCTGCTAAGCGC
1 AGCACGTAGGGGGGACCGAGCCAATCCCCAACTTGCGCATTATGCCTCTTCGACCTGCTAAGCGC
* * * *
32702781 CCGCATACTTGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAG
66 CCGCACACTCGTTTCATGAGTTGACTTAGGCATACAGAGTTCATTCCATGTCTAAG
32702837 CATATGGTGT
Statistics
Matches: 221, Mismatches: 51, Indels: 16
0.77 0.18 0.06
Matches are distributed among these distances:
157 5 0.02
158 93 0.42
159 111 0.50
160 12 0.05
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (159 bp):
AGCACGTAGGGGGGACCGAGCCAATCCCCAACTTGCGCATTATGCCTCTTCGACCTGCTAAGCGC
CCGCACACTCGTTTCATGAGTTGACTTAGGCATACAGAGTTCATTCCATGTCTAAGATCGGATCA
GAATCGAGGGTTGCAGCAATAGGACCGAC
Found at i:32703558 original size:26 final size:26
Alignment explanation
Indices: 32703522--32703571 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
32703512 GGCTTAGGCC
*
32703522 TACGGAGTTCATTCTCAGTCTAAGCA
1 TACGGAGTTCATTCCCAGTCTAAGCA
32703548 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
32703572 ATTTTGAGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCA
Found at i:32704731 original size:158 final size:158
Alignment explanation
Indices: 32704221--32704753 Score: 592
Period size: 158 Copynumber: 3.4 Consensus size: 158
32704211 TAGGCTGAGT
*
32704221 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGAT
1 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAT
* * * * *
32704286 CATATCGAGGGTTGTAGTAGCAGGATCGATAGCATGCAGGGGGGATCGGGCCGATCCTCGGCTTG
66 CAGATCGAGGGTTGTAGTAGCAGGATCGACAGCACGCAGGGGGGACCGGGCCGATCCTCTGCTTG
* * * *
32704351 CGTATTCTGCCTCTCCGATCGACTGAGC
131 CGCATTCTGCCTCTCCGACCGGCTAAGC
* * * * * * * **
32704379 GCCCACTCCCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTATAAGCCCCA-
1 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAG
* * * *
32704442 A-CCGAATCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGGACCGGGCCTATCC-CTG
64 ATCAG-ATCGAGGGTTGTAGTAGCAGGATCGACAGCACGCAG-GGGGGACCGGGCCGATCCTCT-
* ** *
32704505 GCTTGCGCATTATGCCTCTTTGGCCGGCTCAA-C
126 GCTTGCGCATTCTGCCTCTCCGACCGGCT-AAGC
* * * * *
32704538 CCCCGCATGCTCATTTCGTGAGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAGATCAGAT
1 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAT
** * * *
32704603 CAGA-CTGAGGGTTACAGTAGTAGGATCGACAACACGCAGGGGGGACCGGGCCGATCCTCTACTT
66 CAGATC-GAGGGTTGTAGTAGCAGGATCGACAGCACGCAGGGGGGACCGGGCCGATCCTCTGCTT
32704667 GCGCATTCTGCCTCTCCGACCGGCTAAGC
130 GCGCATTCTGCCTCTCCGACCGGCTAAGC
* * * *
32704696 GCCCGTACGCTTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCGAGTCTAAG
1 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
32704754 CATACGGAGT
Statistics
Matches: 300, Mismatches: 63, Indels: 24
0.78 0.16 0.06
Matches are distributed among these distances:
157 6 0.02
158 175 0.58
159 113 0.38
160 6 0.02
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.24
Consensus pattern (158 bp):
GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAT
CAGATCGAGGGTTGTAGTAGCAGGATCGACAGCACGCAGGGGGGACCGGGCCGATCCTCTGCTTG
CGCATTCTGCCTCTCCGACCGGCTAAGC
Found at i:32704756 original size:26 final size:26
Alignment explanation
Indices: 32704727--32704779 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
32704717 GTTGGCTTAG
* *
32704727 GCATACGGAGTTCATTCCGAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
32704753 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
32704779 G
1 G
32704780 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:32705469 original size:26 final size:26
Alignment explanation
Indices: 32705439--32705491 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32705429 GTTGGCTTAG
32705439 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
32705465 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
32705491 G
1 G
32705492 ATTTTAAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:32706687 original size:26 final size:26
Alignment explanation
Indices: 32706657--32706709 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32706647 GTTGGCTTAG
32706657 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
32706683 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
32706709 G
1 G
32706710 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:32708093 original size:26 final size:26
Alignment explanation
Indices: 32708057--32708109 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
32708047 GTTGGCTTAG
32708057 GCATATGGAGTTCATTCCAAGTCTAA
1 GCATATGGAGTTCATTCCAAGTCTAA
*
32708083 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATATGGAGTTCATTCCAAGTCTAA
32708109 G
1 G
32708110 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCAAGTCTAA
Found at i:32708141 original size:355 final size:339
Alignment explanation
Indices: 32707624--32708722 Score: 881
Period size: 355 Copynumber: 3.1 Consensus size: 339
32707614 AGATGGAGAC
* * * * * * * **
32707624 CGAGTTGATCCCAGGCTTGCGCATTATGC-CTCTCCGGCCGGCTGAGTGC-CCGCATGCTCGTTT
1 CGAGCTGATCCCCGGCTTGCGCATTATGCTCTCTCCAGCTGGTTAAGT-CACCACACACTCGTTT
** * ** * * *
32707687 CGTGGGTTGACTTAGGCATGCAAAGTTCATCCCCAGTTTAAGCATACGGAGTTCATTCCTAGTCT
65 TATGGGTTGACTTAGGCATACGGAGTTCATCCCAAGTCTAAGCATATGGAGTTCATTCCTAGTCT
* * * ** *
32707752 AAGATCGGACCAGACCAAGGGTTGTGGTAGCAGGATCGACAGCACGCAGGGGGACCGAGTCGATC
130 AAGATCGGACCAGAACGAGGGTTGCGACAGCAGGATCGACAGCACGCAGGGGGACCG-GCCGATC
* * * *
32707817 CTCAGCTTGCGCATTCTGCCTCTCTGGTTGATTGAGTGCCCGCACACCGGTTTCGTGGGTTAGCT
194 CTCAGCTTGCGCATTCTGCCTCTCTGGTTGACTGAGCGCCCGCACGCC-GTTTCGTGGGTTGGCT
32707882 TAGGCATAGGGAGTTCATTCCATGTCTAAGCCTAAGCCAGACTGAGGGTTGTGGCAGCGGGACTG
258 TAGGCATAGGGAGTTCATTCCATGTCTAAGCCT-AGCCAGAC-GAGGGTTGTGGCAGCGGGACTG
32707947 ACAGCACACAGAGGGGGAT
321 ACAGCACACAGAGGGGGAT
* * * * ** *
32707966 CGAGCCGATCCCTGGCTTGTGCACTATGACTCTCTGATCGACCTCTTCGGTCGGCTGAG-CACCT
1 CGAGCTGATCCCCGGCTTGCGCATTATG-CTCTC---TC--CAGC-T-GGT----TAAGTCACC-
* * * *
32708030 GCACACTCGTTTTATGGGTTGGCTTAGGCATATGGAGTTCATTCCAAGTCTAAGCATATGGAGTT
53 ACACACTCGTTTTATGGGTTGACTTAGGCATACGGAGTTCATCCCAAGTCTAAGCATATGGAGTT
* *
32708095 CATTCCTAGTCTAAGATCGGACCGGATCGAGGGTTGCGACAGCAGGACCAGTAATGGGATCGACA
118 CATTCCTAGTCTAAGATCGGACCAGAACGAGGGTTGCG--A-CA-G--C----A--GGATCGACA
* * * ** * **
32708160 GCACGCAGGGGGGGACTTGGCCAATCCTCGGCTTGTACATTCTACCTCT-TCGACCT-ACTGAGC
171 GCACGCA--GGGGGAC-CGGCCGATCCTCAGCTTGCGCATTCTGCCTCTCT-G-GTTGACTGAGC
* * * ** * *
32708223 ACCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTACATGTCTAAGCCCCAGC
231 GCCCGCACGC-CGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG-CCTAGC
* *
32708288 CAGACCGAGGGTTGTGGTAGCAGAACCAGCAGCGGGA-TCGACAACACACAGAGGGGGAC
294 CAGA-CGAGGG-T-T-GT----G-----GCAGCGGGACT-GACAGCACACAGAGGGGGAT
* **
32708347 CGGGCTGATCCCCGGCTTGCGCATTATGC-CTCTCCAGCTGGTTAAGTGTCCACACACTCGTTTT
1 CGAGCTGATCCCCGGCTTGCGCATTATGCTCTCTCCAGCTGGTTAAGTCACCACACACTCGTTTT
* * * * *
32708411 GTGGGTTGACTTAGGCATGCGGAGTTCATCCCCAA-TCTAAGCAAATGAAGTTCATTCCCAGTCT
66 ATGGGTTGACTTAGGCATACGGAGTTCAT-CCCAAGTCTAAGCATATGGAGTTCATTCCTAGTCT
* * * *
32708475 AAGATC-AATCTGAACTGAGGGTTGCGACAGCAGGATCGATAGCACGCAAGGGGGACCGGGCCGA
130 AAGATCGGACCAGAAC-GAGGGTTGCGACAGCAGGATCGACAGCACGC-AGGGGGACC-GGCCGA
* * * *
32708539 TCC-CCGACTTGCGCATTCTGCCTCTCCGGTCGACTGAGCGCCCGCACGCCCGTTTTGTGGGTTG
192 TCCTCAG-CTTGCGCATTCTGCCTCTCTGGTTGACTGAGCGCCCGCACG-CCGTTTCGTGGGTTG
*
32708603 GCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCAGAACGAGGATTGTGGCAGCGGGA
255 GCTTAGGCATAGGGAGTTCATTCCATGTCTAAG-CCTAGCCAG-ACGAGGGTTGTGGCAGCGGGA
* **
32708668 CCGACAGCATGCAGAGGGGGAT
318 CTGACAGCACACAGAGGGGGAT
32708690 C-AGGCTGATCCCCGGCTTGCGCATTATGC-CTCT
1 CGA-GCTGATCCCCGGCTTGCGCATTATGCTCTCT
32708723 TCGGCCGGCT
Statistics
Matches: 598, Mismatches: 99, Indels: 119
0.73 0.12 0.15
Matches are distributed among these distances:
342 23 0.04
343 57 0.10
344 3 0.01
347 2 0.00
348 1 0.00
349 2 0.00
351 2 0.00
352 2 0.00
353 2 0.00
354 5 0.01
355 191 0.32
356 16 0.03
357 1 0.00
358 2 0.00
359 1 0.00
361 1 0.00
362 1 0.00
364 1 0.00
365 3 0.01
366 1 0.00
367 21 0.04
368 83 0.14
369 103 0.17
370 7 0.01
371 1 0.00
372 5 0.01
373 1 0.00
374 2 0.00
376 3 0.01
379 3 0.01
380 2 0.00
381 50 0.08
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (339 bp):
CGAGCTGATCCCCGGCTTGCGCATTATGCTCTCTCCAGCTGGTTAAGTCACCACACACTCGTTTT
ATGGGTTGACTTAGGCATACGGAGTTCATCCCAAGTCTAAGCATATGGAGTTCATTCCTAGTCTA
AGATCGGACCAGAACGAGGGTTGCGACAGCAGGATCGACAGCACGCAGGGGGACCGGCCGATCCT
CAGCTTGCGCATTCTGCCTCTCTGGTTGACTGAGCGCCCGCACGCCGTTTCGTGGGTTGGCTTAG
GCATAGGGAGTTCATTCCATGTCTAAGCCTAGCCAGACGAGGGTTGTGGCAGCGGGACTGACAGC
ACACAGAGGGGGAT
Found at i:32708954 original size:160 final size:158
Alignment explanation
Indices: 32708486--32708956 Score: 493
Period size: 159 Copynumber: 3.0 Consensus size: 158
32708476 AGATCAATCT
* * * * *
32708486 GAACTGAGGGTTGCGACAGCAGGATCGATAGCACGCAA-GGGGGACCGGGCCGATCCCCGACTTG
1 GAAC-GAGGGTTGCGGCAGCAGGATCGACAGCACGCAAGGGGGGACAGGGTCGATCCCCGGCTTG
* * * * *
32708550 CGCATTCTGCCTCTCCGGTCGACTGAGCGCCCGCACGCCCGTTTTGTGGGTTGGCTTAGGCATAG
65 CGCATTCTGCCTCTCCGCT-GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAC
*
32708615 GGAGTTCATTCCATGTCTAAGCCCTAGCCA
129 GGAGTTCATTCCATGTCTAAGCACTAGCCA
* * * * * *
32708645 GAACGAGGATTGTGGCAGCGGGACCGACAGCATGC-AGAGGGGGATCAGGCT-GATCCCCGGCTT
1 GAACGAGGGTTGCGGCAGCAGGATCGACAGCACGCAAG-GGGGGA-CAGGGTCGATCCCCGGCTT
* * * * * * * *
32708708 GCGCATTATGCCTCTTCGGCCGGCTCAGCGCCCGCACGCTCATTTCTTGGGTTGACTTATGCATA
64 GCGCATTCTGCCTC-TCCGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATA
* * *
32708773 CGAAGTTCATTCC-TAGTCTAAG-ATTGGACCA
128 CGGAGTTCATTCCAT-GTCTAAGCACTAG-CCA
* * *
32708804 GACCGAGGGTTGCGGCAGCAGGATCGACAGCACACAAGGGGGGGACTGGGTCGATCCCCGGCTTG
1 GAACGAGGGTTGCGGCAGCAGGATCGACAGCACGCAA-GGGGGGACAGGGTCGATCCCCGGCTTG
* * * * * *
32708869 TGCATTCTACCTCTCCGACTGGCTGAGCACCAGTACGCTCGTTTCGTGGGTTGGCTTAGGCATAT
65 CGCATTCTGCCTCTCCG-CTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAC
32708934 GGAGTTCATTCCATGTCTAAGCA
129 GGAGTTCATTCCATGTCTAAGCA
32708957 TACAGAGTTC
Statistics
Matches: 248, Mismatches: 52, Indels: 22
0.77 0.16 0.07
Matches are distributed among these distances:
157 1 0.00
158 27 0.11
159 126 0.51
160 91 0.37
161 3 0.01
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.22
Consensus pattern (158 bp):
GAACGAGGGTTGCGGCAGCAGGATCGACAGCACGCAAGGGGGGACAGGGTCGATCCCCGGCTTGC
GCATTCTGCCTCTCCGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGG
AGTTCATTCCATGTCTAAGCACTAGCCA
Found at i:32709668 original size:26 final size:26
Alignment explanation
Indices: 32709638--32709690 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
32709628 GTTGACTTAG
*
32709638 GCATACGGAGTTCA-TCTCCAGTCTAA
1 GCATACGAAGTTCATTC-CCAGTCTAA
*
32709664 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
32709690 G
1 G
32709691 ATCGACCAGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:32710016 original size:26 final size:26
Alignment explanation
Indices: 32709980--32710031 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
32709970 GTTGACTTAG
* *
32709980 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
32710006 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
32710032 AATGGGACCG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:32710810 original size:26 final size:26
Alignment explanation
Indices: 32710760--32710810 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
32710750 TTGGCTTAGG
* *
32710760 CATACGGAGTTGATTCCATGTCTAAC
1 CATACGGAGTTCATTCCATGACTAAC
32710786 CATACGGAGTTCATTCCCA-GACTAA
1 CATACGGAGTTCATT-CCATGACTAA
32710811 GATCACACTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATTCCATGACTAAC
Found at i:32711406 original size:501 final size:500
Alignment explanation
Indices: 32710420--32711830 Score: 1889
Period size: 501 Copynumber: 2.8 Consensus size: 500
32710410 GCTCCCACAC
** * * * *
32710420 GCTCGTTTCATGGGTTGGGTTAGGCATAT-GCAGTTCATTCCATGTCTAAGCCCCAGCTGGACCA
1 GCTCGTTTTGTGGGTTGGCTTAGGCAT-TGGGAGTTCATTCCGTGTCTAAGCCCCAGTTGGACCA
* * * * * *
32710484 AGGGTTGTAGCAGTGGGACTGGCAGCATGCAGAGAGGGACTGGG-TCGATCCCCGGCTTATGCAT
65 AGGGTAGTGGCAGTGGGACTGGCAGCACGCAGAGGGGGACCGGGCT-GATCCCCGGGTTATGCAT
* * *
32710548 TATGCCTCTCCTACCGGCTCAACG-CTCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG
129 TATGCCTCTCCGACCGGCTCAACGCCT-GCACGTTCGTTTCATGGGTTGACTTAGGCATACGGAG
* * ** *
32710612 TTCATTCCCAGCCTAAGATCAGATCGGATCGAGGGTTATAGCAGTAGGATCAACAACACGCA-GG
193 TTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTCGA-CAGTAGGATCAACAGCACGCAGGG
* * * * * * * *
32710676 GGGACGTGACTGGTCCTCGGCTTGCACATTCTGCCTCTCCGGCCAATTGAACGCCCGCACACTCA
257 GGGACGGGACCGATCCTCGACTTGCGCATTCTGCCTCTCGGGTCAATTGAACGCCCGCACGCTCA
*
32710741 TTTCGTTGGTTGGCTTAGGCATACGGAGTTGATTCCATGTCTAACCATACGGAGTTCATTCCCAG
322 TTTCGTGGGTTGGCTTAGGCATACGGAGTTGATTCCATGTCTAACCATACGGAGTTCATTCCCAG
* * * * * **
32710806 ACTAAGATCACACTAGACCGAGGGTTGCGACAATAGGATCAGCAGCACGTAGGGGGGATCGGGTC
387 ACTAAGATCAGACCAGACCGAAGCTTGCGACAATAGGATCAGCAGCACGTAGGGGGGACCAAGTC
* * * *
32710871 GATCCCCGGCTTACACATTCTGCTTCTCCAACCAGTTGACCACCTGTAA
452 GATCCCCGACTTACACATTCTGCCTCTCCAACCAGCTGACCACCCGTAA
32710920 GCTCGTTTTGTGGGTTGGCTTAGGCATTGGGAGTTCATTCCGTGTCTAAGCCCCAGTTGGACCAA
1 GCTCGTTTTGTGGGTTGGCTTAGGCATTGGGAGTTCATTCCGTGTCTAAGCCCCAGTTGGACCAA
* * * *
32710985 GGGTAGTGGCAGGGGGACTGGCAGCACGCAAAGGGGGACCGGGCTGATCCTCGGGTTGTGCATTA
66 GGGTAGTGGCAGTGGGACTGGCAGCACGCAGAGGGGGACCGGGCTGATCCCCGGGTTATGCATTA
* *
32711050 TGCCTCTCCGGCCGGCTCAACGCCTGCACGTTCCTTTCATGGGTTGACTTAGGCATACGGAGTTC
131 TGCCTCTCCGACCGGCTCAACGCCTGCACGTTCGTTTCATGGGTTGACTTAGGCATACGGAGTTC
** *
32711115 ATTCCCAGTCTAAGATTGGACCAGATCGAGGGTTGCGACAGTAGGATCAACAGCACGCAGGGGGG
196 ATTCCCAGTCTAAGATCAGACCGGATCGAGGGTT-CGACAGTAGGATCAACAGCACGCAGGGGGG
* *
32711180 ACGGGACCGATCCTCGACTTACGCATTCTGCCTCTCGGGTCAATTGAACGCCCACACGCTCATTT
260 ACGGGACCGATCCTCGACTTGCGCATTCTGCCTCTCGGGTCAATTGAACGCCCGCACGCTCATTT
** * *
32711245 CGTGGGTTGGCTTAGGCATACAAAGTTGATTCCATGTCTAACCATACAGAGTTCATTCCTAGACT
325 CGTGGGTTGGCTTAGGCATACGGAGTTGATTCCATGTCTAACCATACGGAGTTCATTCCCAGACT
* *
32711310 AAGATCAGACCAGACCGAAGCTTGCGACAATAGTATCGGCAGCACGTAGGGGGGACCAAGTCGAT
390 AAGATCAGACCAGACCGAAGCTTGCGACAATAGGATCAGCAGCACGTAGGGGGGACCAAGTCGAT
* **
32711375 CCCCGACTTACACATTCTGCCTGTCCAACCAGCTGACTGCCCGTAA
455 CCCCGACTTACACATTCTGCCTCTCCAACCAGCTGACCACCCGTAA
* * * * * *
32711421 GCCCATTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCGTGTCTAAGCCCTAGTCGGACCAT
1 GCTCGTTTTGTGGGTTGGCTTAGGCATTGGGAGTTCATTCCGTGTCTAAGCCCCAGTTGGACCAA
* * **
32711486 GGGTAGTGGCAGTGGGACTGGTAGCACGCGGAGGGGGACCGGGCCAATCCCCGGGTTATGCATTA
66 GGGTAGTGGCAGTGGGACTGGCAGCACGCAGAGGGGGACCGGGCTGATCCCCGGGTTATGCATTA
* * * *
32711551 TGCCTCTCCGATCGGCTCAGCGCCCGCACGCTT-GTTTCATGGGTTGACTTAGGCATACAGAGTT
131 TGCCTCTCCGACCGGCTCAACGCCTGCACG-TTCGTTTCATGGGTTGACTTAGGCATACGGAGTT
* *
32711615 CATTCCTAGTCTAAGATCAGACCGGATCGAGGGTTACGACAGCAGGATCAACAGCACGCAGGGGG
195 CATTCCCAGTCTAAGATCAGACCGGATCGAGGGTT-CGACAGTAGGATCAACAGCACGCAGGGGG
* * * * * * ** * * * *
32711680 GACCGGACCGATCCCCGACTTGCGCATTTTCCCTTTTCGGCT-GGTTGAGCACCCGTACGCTCTT
259 GACGGGACCGATCCTCGACTTGCGCATTCTGCC-TCTCGGGTCAATTGAACGCCCGCACGCTCAT
* * *
32711744 TTGGTGGGTTGGCTTAGGCATACGGAGTTGATTCCATGTCTAAGCATACGGAGTTCATTCCCAGT
323 TTCGTGGGTTGGCTTAGGCATACGGAGTTGATTCCATGTCTAACCATACGGAGTTCATTCCCAGA
32711809 CTAAGATCAGACCAGACCGAAG
388 CTAAGATCAGACCAGACCGAAG
32711831 GGGAGTTCAT
Statistics
Matches: 797, Mismatches: 107, Indels: 13
0.87 0.12 0.01
Matches are distributed among these distances:
499 1 0.00
500 216 0.27
501 572 0.72
502 8 0.01
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.24
Consensus pattern (500 bp):
GCTCGTTTTGTGGGTTGGCTTAGGCATTGGGAGTTCATTCCGTGTCTAAGCCCCAGTTGGACCAA
GGGTAGTGGCAGTGGGACTGGCAGCACGCAGAGGGGGACCGGGCTGATCCCCGGGTTATGCATTA
TGCCTCTCCGACCGGCTCAACGCCTGCACGTTCGTTTCATGGGTTGACTTAGGCATACGGAGTTC
ATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTCGACAGTAGGATCAACAGCACGCAGGGGGGA
CGGGACCGATCCTCGACTTGCGCATTCTGCCTCTCGGGTCAATTGAACGCCCGCACGCTCATTTC
GTGGGTTGGCTTAGGCATACGGAGTTGATTCCATGTCTAACCATACGGAGTTCATTCCCAGACTA
AGATCAGACCAGACCGAAGCTTGCGACAATAGGATCAGCAGCACGTAGGGGGGACCAAGTCGATC
CCCGACTTACACATTCTGCCTCTCCAACCAGCTGACCACCCGTAA
Found at i:32711790 original size:26 final size:26
Alignment explanation
Indices: 32711761--32711813 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32711751 GTTGGCTTAG
*
32711761 GCATACGGAGTTGATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
32711787 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
32711813 G
1 G
32711814 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:32711856 original size:21 final size:21
Alignment explanation
Indices: 32711832--32711885 Score: 108
Period size: 21 Copynumber: 2.6 Consensus size: 21
32711822 AGACCGAAGG
32711832 GGAGTTCATTCCCAGGCATAC
1 GGAGTTCATTCCCAGGCATAC
32711853 GGAGTTCATTCCCAGGCATAC
1 GGAGTTCATTCCCAGGCATAC
32711874 GGAGTTCATTCC
1 GGAGTTCATTCC
32711886 ATGTCTAAGC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.22, C:0.28, G:0.24, T:0.26
Consensus pattern (21 bp):
GGAGTTCATTCCCAGGCATAC
Found at i:32712252 original size:73 final size:73
Alignment explanation
Indices: 32712133--32712276 Score: 175
Period size: 73 Copynumber: 2.0 Consensus size: 73
32712123 TGAAGTTAAT
* * * * *
32712133 TCCCAATCTAAGATCAGACCAGATCGAGGGTTGTGGCAGCTAGATCGGTAGTACACAGGGGGGAT
1 TCCCAATCTAAGATCAGACCAGAACAAGGGTTGTGGCAGCAAGATCGATAGCACACAGGGGGGAT
32712198 AGGGCCGA
66 AGGGCCGA
* **
32712206 TCCCAGTCTAAGATCAGACC-GAACTAAGGGTTGCT-GCAGCAAGATCGATAGCACGTAGGGGGG
1 TCCCAATCTAAGATCAGACCAGAAC-AAGGGTTG-TGGCAGCAAGATCGATAGCACACAGGGGGG
*
32712269 ATCGGGCC
64 ATAGGGCC
32712277 AGTCCCTGGC
Statistics
Matches: 60, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
72 3 0.05
73 56 0.93
74 1 0.02
ACGTcount: A:0.27, C:0.22, G:0.33, T:0.17
Consensus pattern (73 bp):
TCCCAATCTAAGATCAGACCAGAACAAGGGTTGTGGCAGCAAGATCGATAGCACACAGGGGGGAT
AGGGCCGA
Found at i:32712398 original size:26 final size:26
Alignment explanation
Indices: 32712349--32712401 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
32712339 GTTGGCTTAG
*
32712349 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATGCCATGTCTAA
*
32712375 GCATACGGAGTTCACTGCTA-GTCTAA
1 GCATACGGAGTTCA-TGCCATGTCTAA
32712401 G
1 G
32712402 ATCAGATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATGCCATGTCTAA
Found at i:32712610 original size:26 final size:26
Alignment explanation
Indices: 32712554--32712610 Score: 80
Period size: 26 Copynumber: 2.2 Consensus size: 26
32712544 GTGGGTTGAC
*
32712554 TTAAGCATACGGAGTTCATCTCTAGT
1 TTAAGCATACGGAGTTCATCTCCAGT
*
32712580 CTAAGCATACGGAGTTCAT-TCCCAGT
1 TTAAGCATACGGAGTTCATCT-CCAGT
32712606 TTAAG
1 TTAAG
32712611 ATCGGATCGG
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
25 1 0.04
26 26 0.96
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (26 bp):
TTAAGCATACGGAGTTCATCTCCAGT
Found at i:32713668 original size:159 final size:159
Alignment explanation
Indices: 32713399--32714036 Score: 455
Period size: 159 Copynumber: 3.9 Consensus size: 159
32713389 ATCAGACCGA
* * * * * * * *
32713399 ACCGAGGGTTGCGGTAGTAGGATCGACAGCATGCA-AAGGGGATCGAGTCGACCCCTGGCTTGCA
1 ACCGAGGGTTGTGGCAGCAGGAGCGACAGCACGCAGAAGGGGATCGGGTCGATCCCTGACTTGCA
* * * * * *
32713463 CATTCTGCCCCTCCAGACGG-TGGAGCACCCGCACACCCGTTTCGTGGGTTGGCTTAGGAATAGA
66 CATTCTGCCTCTCCGGCCGGCT-GAGCGCCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATAGA
*
32713527 CAGTTCATTCCATGTCTAAGCCCCAGCCAG
130 GAGTTCATTCCATGTCTAAGCCCCAGCCAG
* * * * *
32713557 ACCGAGGGTTGTGGCAGCGGGAGCGACAGTAGGTAGAGGGGGATCGGGTCGATCCCTGACTTGCA
1 ACCGAGGGTTGTGGCAGCAGGAGCGACAGCACGCAGAAGGGGATCGGGTCGATCCCTGACTTGCA
* * * * *
32713622 CATTATGCCTCTCCGGCCGGCTCAGCGCCCGCACGCTCGTTCCGTGGGTTGACTTAGGCATATG-
66 CATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATA-GA
* * ** * **
32713686 GAGTTCATTCCAAGTCTGAG-ATCGGACTGG
130 GAGTTCATTCCATGTCTAAGCCCCAG-CCAG
* ** * * * * * *
32713716 ACCGAGGGTTGTGGTAGCAGGATTGACAGCACGCATAAGGGGATTGGTTCGGTCCCCGACTTGCG
1 ACCGAGGGTTGTGGCAGCAGGAGCGACAGCACGCAGAAGGGGATCGGGTCGATCCCTGACTTGCA
* * * *
32713781 CATTCTGCCTCTTCGGCTGGCTGAGCGCCCGCACACT-GATTTCGTGGGTTGGCTTAGGCAGACA
66 CATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACACTCG-TTTCGTGGGTTGGCTTAGGCATAGA
* * *
32713845 GAGTTCATTCCATGCCTAAGCCCTAGCCGG
130 GAGTTCATTCCATGTCTAAGCCCCAGCCAG
* * * * * *
32713875 ACTGAAAGTTGTGGTAGTTGGACTGGCAGCTA-GACCGGCAGCACACAGACGGGGACCGGG-CTG
1 ACCG--A-----GG--GTT-G--TGGCAGC-AGGAGCGACAGCACGCAGAAGGGGATCGGGTC-G
* * *** * * * * *
32713938 ACACCCCG-CTTGCGTTTTCTGCCTCTCTGGTCGACTGAGTGCCCACACACTCGTTTCGTGGGTT
52 A-TCCCTGACTTGCACATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACACTCGTTTCGTGGGTT
* *
32714002 GGCTTAGGCATACAGACTTCATTCCATGTCTAAGC
116 GGCTTAGGCATAGAGAGTTCATTCCATGTCTAAGC
32714037 ATACGGAGTT
Statistics
Matches: 370, Mismatches: 87, Indels: 33
0.76 0.18 0.07
Matches are distributed among these distances:
158 30 0.08
159 219 0.59
160 3 0.01
161 1 0.00
166 2 0.01
168 3 0.01
169 1 0.00
170 1 0.00
171 103 0.28
172 7 0.02
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (159 bp):
ACCGAGGGTTGTGGCAGCAGGAGCGACAGCACGCAGAAGGGGATCGGGTCGATCCCTGACTTGCA
CATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATAGAG
AGTTCATTCCATGTCTAAGCCCCAGCCAG
Found at i:32714048 original size:26 final size:26
Alignment explanation
Indices: 32714009--32714061 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
32713999 GTTGGCTTAG
32714009 GCATACAGACTTCATTCC-ATGTCTAA
1 GCATACAGACTTCATTCCTA-GTCTAA
* *
32714035 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGACTTCATTCCTAGTCTAA
32714061 G
1 G
32714062 ATCGGACCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGACTTCATTCCTAGTCTAA
Found at i:32714960 original size:171 final size:171
Alignment explanation
Indices: 32714651--32715013 Score: 421
Period size: 171 Copynumber: 2.1 Consensus size: 171
32714641 TTGGCATGCG
* * * *
32714651 CATTCTGCCTCTCCGACCGGCTGGGCACCCGTACGCTCGTTTCGTGGGTTGCCTTAGGCATACGG
1 CATTCTGCCTCTCCGACCGACTGAGCACCCGCACACTCGTTTCGTGGGTTGCCTTAGGCATACGG
* * ** *
32714716 AGTTCATTCTATGTCTAAGCCCCAGTCGGACTGAGGGTTGTGGCAGCTGGACCAGCAGCGAGATC
66 ACTTCATTCCATGTCTAAGCCCCAACCGGACTGAAGGTTGTGGCAGCTGGACCAGCAGCGAGATC
*
32714781 AGCAGCACGCAGAGGGGGATCAG-GTTAATCCCCGGCTTGCA
131 AACAGCACGCAGAGGGGGA-CAGAGTTAATCCCCGGCTTGCA
* ** * *
32714822 CATTCTGCCTCTTCGGTCGACTGAGCACCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATGCGG
1 CATTCTGCCTCTCCGACCGACTGAGCACCCGCACACTCGTTTCGTGGGTTGCCTTAGGCATACGG
* * * *
32714887 ACTTCATTCCATGTCTAAGCCCTAACCGGA-TCGAAGGTTGTGGTAG-TAGGATC-GATAGCTG-
66 ACTTCATTCCATGTCTAAGCCCCAACCGGACT-GAAGGTTGTGGCAGCT-GGACCAG-CAGC-GA
* * *
32714948 GATCAACAGCACGCAGAGGGGGACCGAGTTGATCCTCGGCTTGCA
127 GATCAACAGCACGCAGAGGGGGACAGAGTTAATCCCCGGCTTGCA
* * *
32714993 CATTATGTCTCTCCGGCCGAC
1 CATTCTGCCTCTCCGACCGAC
32715014 CTCTCCGACT
Statistics
Matches: 161, Mismatches: 26, Indels: 10
0.82 0.13 0.05
Matches are distributed among these distances:
170 5 0.03
171 155 0.96
172 1 0.01
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.24
Consensus pattern (171 bp):
CATTCTGCCTCTCCGACCGACTGAGCACCCGCACACTCGTTTCGTGGGTTGCCTTAGGCATACGG
ACTTCATTCCATGTCTAAGCCCCAACCGGACTGAAGGTTGTGGCAGCTGGACCAGCAGCGAGATC
AACAGCACGCAGAGGGGGACAGAGTTAATCCCCGGCTTGCA
Found at i:32715736 original size:170 final size:171
Alignment explanation
Indices: 32715489--32715820 Score: 434
Period size: 170 Copynumber: 1.9 Consensus size: 171
32715479 TGACTTGAAA
* * *
32715489 ATTCTACCTCTCTGGCCGACTGAACGCCCGCACACTTGTTTCATGGGTTGGCTTAGGCATACGGA
1 ATTCTACCTCTCCGGCCGACTGAACGCCCGCACACTCGTTTCATGGGTTGGCTTAGGCATACAGA
* * * * * *
32715554 GTTCACTCCATGTCTAAGCCCCAGCCGGA-CTAAGGGTTGTGGCAGCTGGATTGGTAGCAGGATC
66 CTTCACTCCATGTCTAAGCACCAGCCAGATCGAA-GGTTGTGGCAGCAGGACTGGTAGCAGGATC
* * *
32715618 GACAACACACATAGGGGGACCGGGTTGATCCCCAACTTATGC
130 GACAACACACAAAGGGGGACCAGGCTGATCCCCAACTTATGC
* * * *
32715660 ATTCTGCCTCTCCGGTCGACTGAGCGCCCGTACACTCG-TTCATGGGTTGGCTTAGGCATACAGA
1 ATTCTACCTCTCCGGCCGACTGAACGCCCGCACACTCGTTTCATGGGTTGGCTTAGGCATACAGA
* * * *
32715724 CTTCATTCCATGTCTAAGCACCAGCTAGATCGAAGGTTGTGGTAGCAGGACTGGTAGCGGGATCG
66 CTTCACTCCATGTCTAAGCACCAGCCAGATCGAAGGTTGTGGCAGCAGGACTGGTAGCAGGATCG
* * *
32715789 ACAGCATACAAAGGGGGATCAGGCTGATCCCC
131 ACAACACACAAAGGGGGACCAGGCTGATCCCC
32715821 GGCTTGCACA
Statistics
Matches: 137, Mismatches: 23, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
170 102 0.74
171 35 0.26
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.23
Consensus pattern (171 bp):
ATTCTACCTCTCCGGCCGACTGAACGCCCGCACACTCGTTTCATGGGTTGGCTTAGGCATACAGA
CTTCACTCCATGTCTAAGCACCAGCCAGATCGAAGGTTGTGGCAGCAGGACTGGTAGCAGGATCG
ACAACACACAAAGGGGGACCAGGCTGATCCCCAACTTATGC
Found at i:32715935 original size:26 final size:26
Alignment explanation
Indices: 32715899--32715948 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
32715889 GTTGACTTAG
32715899 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
32715925 GCATATGGAGTTTATTCCCAGTCT
1 GCATACGGAGTTCATCCCCAGTCT
32715949 CAGATCAAAC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:32716422 original size:157 final size:158
Alignment explanation
Indices: 32716005--32716423 Score: 429
Period size: 158 Copynumber: 2.7 Consensus size: 158
32715995 CAAAGAGGAT
* * * *
32716005 CAGGTCGATCCCCAGCTTGCGTATTCTGCCTCTCC-ATCTGGCTGAGTGCCCGCACG-TCCGTTT
1 CAGGTCGATCCCCAACTTGCGCATTCTGCCTCTCCGATC-GGCTGAGCGCCCGCACGCT-CATTT
* * * * *
32716068 TGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGTGGGTTGTG
64 TATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAACCCCAGCCGGACCGAGGGTTGCG
* * *
32716133 GCAGCGGGACCGACAGCATGCAGAAGGGGAT
129 ACAGCAGGACCGACAGCATGCAG-AGGGGAC
* * * * * * * *
32716164 C-GAGTCGATCCCCGACTTGCGCATTATGCCTCTCCGGT-GGCTCAGCGCCTGAATGCTCATTTC
1 CAG-GTCGATCCCCAACTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCATTTT
* * * * ** *
32716227 ATGGGTTGACTTAGGCATACGGAGTTCAGT-CGTAGTCTAATATCGGA-CCGGATCGAGGGTTGC
65 ATGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAA-ACCCCAGCCGGACCGAGGGTTGC
* * *
32716290 GATAGCAGGATCGACAGCATGCAG-GGGGCC
128 GACAGCAGGACCGACAGCATGCAGAGGGGAC
* * *
32716320 CAGGTCGATCCCCAACTTGCACATTCTGTCTCTCCGATCGGCTGAGCCCCCGCACGCTCATTTTA
1 CAGGTCGATCCCCAACTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCATTTTA
*
32716385 TGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
66 TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
32716424 GCATATGGAG
Statistics
Matches: 207, Mismatches: 45, Indels: 18
0.77 0.17 0.07
Matches are distributed among these distances:
156 35 0.17
157 55 0.27
158 84 0.41
159 32 0.15
160 1 0.00
ACGTcount: A:0.18, C:0.28, G:0.29, T:0.25
Consensus pattern (158 bp):
CAGGTCGATCCCCAACTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCATTTTA
TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAACCCCAGCCGGACCGAGGGTTGCGAC
AGCAGGACCGACAGCATGCAGAGGGGAC
Found at i:32717758 original size:26 final size:26
Alignment explanation
Indices: 32717722--32717774 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32717712 GTTGGCTTAG
32717722 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
32717748 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
32717774 G
1 G
32717775 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:32717955 original size:26 final size:26
Alignment explanation
Indices: 32717919--32717971 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
32717909 GTTGACTTAG
32717919 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
32717945 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
32717971 G
1 G
32717972 ATCGAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:32718251 original size:159 final size:158
Alignment explanation
Indices: 32717978--32718289 Score: 401
Period size: 159 Copynumber: 2.0 Consensus size: 158
32717968 TAAGATCGAA
* * * * *
32717978 CCAGATCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGGGGGGATCGAGCCGATCCCCGACTT
1 CCAGACCGAGGGTTGCGGGAGCAGGATCGGCAGAACACAAGGGGGATCGAGCCGATCCCCGACTT
* * *
32718043 ACACATTTTGCCTCTCCGGCCAGCTGAGCGCCCACACACACGTTTCGTGGGTTGGCTTAGGCATA
66 ACACATTCTGCCTCTCCGACCAGCTGAGCACCCACACACACGTTTCGTGGGTTGGCTTAGGCATA
*
32718108 GGGAGTTCATTACATGTCTAAGCCCCAG
131 CGGAGTTCATTACATGTCTAAGCCCCAG
* * *
32718136 CCAGACCGAGGGTTGTGGGAGCAGGA-CTGGCAGAACACATAGGGGGATCGGGTCGATCCCCGAC
1 CCAGACCGAGGGTTGCGGGAGCAGGATC-GGCAGAACACA-AGGGGGATCGAGCCGATCCCCGAC
* * * * ** * **
32718200 TTGCGCATTCTGCCTCTCCGATCGGCTGAGCACCTGCACGCTTGTTTCGTGGGTTGGCTTAGGCA
64 TTACACATTCTGCCTCTCCGACCAGCTGAGCACCCACACACACGTTTCGTGGGTTGGCTTAGGCA
*
32718265 TACGGAGTTCATTCCATGTCTAAGC
129 TACGGAGTTCATTACATGTCTAAGC
32718290 ATACAGAGTT
Statistics
Matches: 130, Mismatches: 22, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
157 1 0.01
158 32 0.25
159 97 0.75
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.22
Consensus pattern (158 bp):
CCAGACCGAGGGTTGCGGGAGCAGGATCGGCAGAACACAAGGGGGATCGAGCCGATCCCCGACTT
ACACATTCTGCCTCTCCGACCAGCTGAGCACCCACACACACGTTTCGTGGGTTGGCTTAGGCATA
CGGAGTTCATTACATGTCTAAGCCCCAG
Found at i:32718312 original size:26 final size:26
Alignment explanation
Indices: 32718262--32718314 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
32718252 GTTGGCTTAG
* *
32718262 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATATCTAA
32718288 GCATACAGAGTTCATTCCCA-ATCTAA
1 GCATACAGAGTTCATT-CCATATCTAA
32718314 G
1 G
32718315 AGTTTAAGTC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Found at i:32719060 original size:26 final size:26
Alignment explanation
Indices: 32718983--32719061 Score: 108
Period size: 26 Copynumber: 3.0 Consensus size: 26
32718973 GTTGACTTTG
*
32718983 GCATA-CAGAGTTCA-TCCCTAGTCTAG
1 GCATACCA-AGTTCATTCCC-AGTCTAA
*
32719009 GCATACCAAGTTCATCCCCAGTCTAA
1 GCATACCAAGTTCATTCCCAGTCTAA
32719035 GCATACCAAGTTCATTCCCAGTCTAA
1 GCATACCAAGTTCATTCCCAGTCTAA
32719061 G
1 G
32719062 ATTAGATCGG
Statistics
Matches: 48, Mismatches: 3, Indels: 4
0.87 0.05 0.07
Matches are distributed among these distances:
26 43 0.90
27 5 0.10
ACGTcount: A:0.29, C:0.30, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACCAAGTTCATTCCCAGTCTAA
Found at i:32719858 original size:26 final size:26
Alignment explanation
Indices: 32719822--32719877 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
32719812 TGGGTTGACT
32719822 TAAGCACACGGAGTTCATCCCCAGTC
1 TAAGCACACGGAGTTCATCCCCAGTC
* *
32719848 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCACACGGAGTTCATCCCCAGTC
32719874 TAAG
1 TAAG
32719878 ATCAGACCGG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.23
Consensus pattern (26 bp):
TAAGCACACGGAGTTCATCCCCAGTC
Found at i:32720316 original size:158 final size:157
Alignment explanation
Indices: 32719851--32720337 Score: 478
Period size: 159 Copynumber: 3.1 Consensus size: 157
32719841 CCCAGTCTAA
* * **
32719851 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGAGACAGCAGGATCGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGAGGCAGCAGGATCGACA
* * * * * * *
32719916 GCACG-CGGGGGACCTGACCGA-CCCTCGGCTTGCGCATTCTACCTCTCCGGTCGGCTAAGCGAC
66 GCACGAGGGGGGATCGGGCCGATCCC-AGGCTTGCGCATTCTGCCTCTCCGGTCGGCTAAGCGCC
* *
32719979 CGCACGCCCGTTTCATGGGTTGGCTTAG
130 CGCACGCTCGTTTCGTGGGTTGGCTTAG
* * ** * * * *
32720007 GCTTAGGGAGTTCATT-CCATGTCTAAGCCCCAG-TCGGACCGAGGGTTGTGGCAGCGGGACCGA
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGATCGGATCGAGGGTTGAGGCAGCAGGATCGA
* * * * ** * *
32720070 CAGCACGCAGAGGGGGATCGGGTCGATCCCTGACTTGCGCATTATGCCTCTCCGACCGGCTCAGT
64 CAGCACG-AG-GGGGGATCGGGCCGATCCCAGGCTTGCGCATTCTGCCTCTCCGGTCGGCTAAGC
* * * * *
32720135 GCCTGAATGCTCGTTTCGTGGGTTGACTTAC
127 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * * * *
32720166 ACATACAGAGTTCTTTCCCAGTCTAAGATCGGATCGAATCGAGGGTTGCGGCAGCAAGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGAGGCAGCAGGATCGACA
* * * *
32720231 GCACGTAGGGGGGATCGGGCCGATCCCAGGCTTACGCATTCTGCCTCTTCGGTCAGCTGAGCGCC
66 GCACG-AGGGGGGATCGGGCCGATCCCAGGCTTGCGCATTCTGCCTCTCCGGTCGGCTAAGCGCC
*
32720296 CGCACGTTCGTTTCGTGGGTTGGCTTAG
130 CGCACGCTCGTTTCGTGGGTTGGCTTAG
32720324 GCATACGGAGTTCA
1 GCATACGGAGTTCA
32720338 ATCTTTGTCT
Statistics
Matches: 255, Mismatches: 68, Indels: 14
0.76 0.20 0.04
Matches are distributed among these distances:
155 3 0.01
156 50 0.20
157 3 0.01
158 81 0.32
159 112 0.44
160 6 0.02
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.22
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGAGGCAGCAGGATCGACA
GCACGAGGGGGGATCGGGCCGATCCCAGGCTTGCGCATTCTGCCTCTCCGGTCGGCTAAGCGCCC
GCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:32720373 original size:26 final size:26
Alignment explanation
Indices: 32720326--32720376 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
32720316 TGGCTTAGGC
***
32720326 ATACGGAGTTCAATCTTTGTCTAAGT
1 ATACGGAGTTCAATCCCAGTCTAAGT
*
32720352 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCAATCCCAGTCTAAG
32720377 ATGGGATTGG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.33
Consensus pattern (26 bp):
ATACGGAGTTCAATCCCAGTCTAAGT
Found at i:32720419 original size:12 final size:12
Alignment explanation
Indices: 32720402--32720429 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
32720392 GGGTTATGAG
32720402 AGCAGGACCAGC
1 AGCAGGACCAGC
32720414 AGCAGGACCAGC
1 AGCAGGACCAGC
32720426 AGCA
1 AGCA
32720430 TGATCGATAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.36, C:0.32, G:0.32, T:0.00
Consensus pattern (12 bp):
AGCAGGACCAGC
Found at i:32720881 original size:159 final size:158
Alignment explanation
Indices: 32720607--32720916 Score: 410
Period size: 159 Copynumber: 2.0 Consensus size: 158
32720597 AGATCAGATC
* *
32720607 GGACCGAGGGTTGCGACAGCAAGATCGGCAGCACGCAGGGGGGACCGGGCCGATCCTCGACTTGC
1 GGACCGAGGGTTGCGACAGCAAGACCGGCAGCACGCAGGGGGGACCAGGCCGATCCTCGACTTGC
* * *
32720672 GCATTCTACCTCTCCAGCCGGCTGAGCGCTCGCACGCCTGTTTCGTGGGTTGGCTTAGGCATAGG
66 GCATTCTACCTCTCCAGCCGACTAAGCGCTCGCACGCCTGTTTCGTGGGTTGGCTTAGGCATACG
32720737 GAG-TTCATTCCATGTCTAAGCCCCAGTT
131 GAGTTTCATT-CATGTCTAAGCCCCAGTT
* * * * * * * *
32720765 GGACCGAGGGTTGTGGCAGCGAGACCGGCAGCACGTAGAGGGGGACTAGGCTGATCCTTGGCTTG
1 GGACCGAGGGTTGCGACAGCAAGACCGGCAGCACGCAG-GGGGGACCAGGCCGATCCTCGACTTG
* * * *
32720830 TGCATTCTGCCTCTCC-GACCGACTAAGTGCTTGCACG-CTCGTTTCGTGGGTTGGCTTAGGCAT
65 CGCATTCTACCTCTCCAG-CCGACTAAGCGCTCGCACGCCT-GTTTCGTGGGTTGGCTTAGGCAT
32720893 ACGGAGTTTCATTCATGTCTAAGC
128 ACGGAGTTTCATTCATGTCTAAGC
32720917 ATACGGAGTT
Statistics
Matches: 131, Mismatches: 17, Indels: 7
0.85 0.11 0.05
Matches are distributed among these distances:
158 36 0.27
159 89 0.68
160 6 0.05
ACGTcount: A:0.17, C:0.27, G:0.33, T:0.23
Consensus pattern (158 bp):
GGACCGAGGGTTGCGACAGCAAGACCGGCAGCACGCAGGGGGGACCAGGCCGATCCTCGACTTGC
GCATTCTACCTCTCCAGCCGACTAAGCGCTCGCACGCCTGTTTCGTGGGTTGGCTTAGGCATACG
GAGTTTCATTCATGTCTAAGCCCCAGTT
Found at i:32721338 original size:159 final size:158
Alignment explanation
Indices: 32721031--32721692 Score: 566
Period size: 159 Copynumber: 4.2 Consensus size: 158
32721021 GACCAGTAGT
* ** * * * * * *
32721031 AGGATCGACAGCACTAGAGGGGGATCGGGCTGATCCCCGACTTGTGCATTCTGCTTCGCCAGTCG
1 AGGATCGATAGCACGCGAGGGGGATCAGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCG
* * * *
32721096 ACTGAGTGCCTGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG
66 ACTGAGCGCCCGCACGCCCGTTTCGTGGGTTGACTTAGGCATAGGGAGTTCATTCCATGTCTAAG
** * * *
32721161 CCCCAG-TCGGACCAAGGGTTGTGGCAGC
131 -ATCAGATCGGATCGAGGGTTATGGCAGC
* * * * * *
32721189 GGGACCGATAGCACGCGGAGGGGGATCGGGCCGATCCCCGACTTGCGCATTATGCCTCTTCGGCC
1 AGGATCGATAGCACGC-GAGGGGGATCAGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGTC
* * ** * * *
32721254 GGCTCAATGCCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCA-GTCTA
65 GACTGAGCGCCCGCACGCCCGTTTCGTGGGTTGACTTAGGCATAGGGAGTTCATT-CCATGTCTA
* *
32721318 AGATCGGATTGGATCGAGGGTTATGGCAGC
129 AGATCAGATCGGATCGAGGGTTATGGCAGC
* * * * * * * *
32721348 AGGATCGACAACACTCGAGGGGGACCAAGTCGATCCCCGGCTTGCGTATTCTGCCTCTCCGGTCG
1 AGGATCGATAGCACGCGAGGGGGATCAGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCG
* * *
32721413 ACTGAGCGCCCACACGCTCGTTTCGTGGGTTGGCTTAGGCAT--GGAGTTCATTCCCA-GTCTAA
66 ACTGAGCGCCCGCACGCCCGTTTCGTGGGTTGACTTAGGCATAGGGAGTTCATT-CCATGTCTAA
* * * **
32721475 GATCAGACCAGATCGAGGGTTACGATAGC
130 GATCAGATCGGATCGAGGGTTATGGCAGC
* * * * * * * *
32721504 AGGATTGATAGCACG-TAGGGGGGATCAGGCTGAGCCTC-AGCTTGTGCATTTTGCCTCTCCGAT
1 AGGATCGATAGCACGCGA-GGGGGATCAGGCCGATCCCCGA-CTTGCGCATTCTGCCTCTCCGGT
* * *
32721567 CGGCTGAGCGCCCGCACGCCCATTTTGTGGGTTGACTTAGGCATAGGGAGTTCATTCCATGTCTA
64 CGACTGAGCGCCCGCACGCCCGTTTCGTGGGTTGACTTAGGCATAGGGAGTTCATTCCATGTCTA
** * * *
32721632 AGCCCCAG-CCGGACCGAGGGTTCTGGCAGC
129 AG-ATCAGATCGGATCGAGGGTTATGGCAGC
* * ** *
32721662 AAGACCGGCAGCACGCAGAGGGGGACCAGGC
1 AGGATCGATAGCACGC-GAGGGGGATCAGGC
32721693 ACATGCTGGG
Statistics
Matches: 399, Mismatches: 94, Indels: 21
0.78 0.18 0.04
Matches are distributed among these distances:
155 1 0.00
156 124 0.31
157 3 0.01
158 131 0.33
159 136 0.34
160 4 0.01
ACGTcount: A:0.19, C:0.27, G:0.32, T:0.22
Consensus pattern (158 bp):
AGGATCGATAGCACGCGAGGGGGATCAGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCG
ACTGAGCGCCCGCACGCCCGTTTCGTGGGTTGACTTAGGCATAGGGAGTTCATTCCATGTCTAAG
ATCAGATCGGATCGAGGGTTATGGCAGC
Found at i:32721527 original size:156 final size:156
Alignment explanation
Indices: 32721031--32721633 Score: 469
Period size: 156 Copynumber: 3.8 Consensus size: 156
32721021 GACCAGTAGT
* * * * * * * * *
32721031 AGGATCGACAGCACTAGAGGGGGATCGGGCTGATCCCCGACTTGTGCATTCTGCTTCGCCAGTCG
1 AGGATCGACAACACTAGAGGGGGACCAGGC-GATCCCCGGCTTGCGCATTATGCCTCTCCGGTCG
* * * * * *
32721096 ACTGAGTGCCTGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAA
65 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA-GGAGTTCATTCCCA-GTCTAA
** * * * * ** *
32721160 GCCCCAG-TCGGACCAAGGGTTGTGGCAGC
128 G-ATCAGACCAGATCGAGGGTTACGACAGC
* * * * ** * * * * *
32721189 GGGACCGATAGCACGCGGAGGGGGATCGGGCCGATCCCCGACTTGCGCATTATGCCTCTTCGGCC
1 AGGATCGACAACAC-TAGAGGGGGACCAGG-CGATCCCCGGCTTGCGCATTATGCCTCTCCGGTC
* ** *
32721254 GGCTCAATGCCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAA
64 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA-GGAGTTCATTCCCAGTCTAA
* *** * *
32721319 GATCGGATTGGATCGAGGGTTATGGCAGC
128 GATCAGACCAGATCGAGGGTTACGACAGC
* * * *
32721348 AGGATCGACAACACTCGAGGGGGACCAAGTCGATCCCCGGCTTGCGTATTCTGCCTCTCCGGTCG
1 AGGATCGACAACACTAGAGGGGGACC-AGGCGATCCCCGGCTTGCGCATTATGCCTCTCCGGTCG
* * *
32721413 ACTGAGCGCCCACACGCTCGTTTCGTGGGTTGGCTTAGGCAT-GGAGTTCATTCCCAGTCTAAGA
65 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAGGAGTTCATTCCCAGTCTAAGA
*
32721477 TCAGACCAGATCGAGGGTTACGATAGC
130 TCAGACCAGATCGAGGGTTACGACAGC
* * * * * * * * * *
32721504 AGGATTGATAGCACGTAG-GGGGGATCAGGCTGAGCCTCAGCTTGTGCATTTTGCCTCTCCGATC
1 AGGATCGACAACAC-TAGAGGGGGACCAGGC-GATCCCCGGCTTGCGCATTATGCCTCTCCGGTC
* * *
32721568 GGCTGAGCGCCCGCACGCCCATTTTGTGGGTTGACTTAGGCATAGGGAGTTCATT-CCATGTCTA
64 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA-GGAGTTCATTCCCA-GTCTA
32721632 AG
127 AG
32721634 CCCCAGCCGG
Statistics
Matches: 360, Mismatches: 75, Indels: 20
0.79 0.16 0.04
Matches are distributed among these distances:
155 3 0.01
156 123 0.34
157 5 0.01
158 104 0.29
159 121 0.34
160 4 0.01
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.24
Consensus pattern (156 bp):
AGGATCGACAACACTAGAGGGGGACCAGGCGATCCCCGGCTTGCGCATTATGCCTCTCCGGTCGG
CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAGGAGTTCATTCCCAGTCTAAGAT
CAGACCAGATCGAGGGTTACGACAGC
Found at i:32722380 original size:26 final size:26
Alignment explanation
Indices: 32722344--32722396 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32722334 GTTGACTTAG
*
32722344 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
32722370 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
32722396 G
1 G
32722397 ATCGGACTGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:32722875 original size:26 final size:26
Alignment explanation
Indices: 32722845--32722897 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
32722835 GTTGGCTTGG
**
32722845 GCATACGGAGTTTGTTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
* *
32722871 GCATATGGAGTTCATTCCCTGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
32722897 G
1 G
32722898 ATCAGACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.23, C:0.21, G:0.23, T:0.34
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:32723803 original size:26 final size:26
Alignment explanation
Indices: 32723727--32723805 Score: 115
Period size: 26 Copynumber: 3.0 Consensus size: 26
32723717 GTTGGCTTAG
* *
32723727 GCATACGGAGTTCATTGCATGTCTTA
1 GCATACGGAGTTCATTCCATGTCTAA
*
32723753 GCATACGGAGTTCATTCCATATCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
32723779 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
32723805 G
1 G
32723806 ATTTTGAAGC
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
26 45 0.94
27 3 0.06
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:32724516 original size:26 final size:26
Alignment explanation
Indices: 32724466--32724518 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
32724456 GTTGACTTAG
* *
32724466 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACAGAGTTCATCCCTAATCTAA
32724492 GCATACAGAGTTCATTCCC-AATCTAA
1 GCATACAGAGTTCA-TCCCTAATCTAA
32724518 G
1 G
32724519 ATCGGATTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCTAATCTAA
Found at i:32724799 original size:159 final size:159
Alignment explanation
Indices: 32724531--32724996 Score: 483
Period size: 159 Copynumber: 2.9 Consensus size: 159
32724521 CGGATTGAAT
* ** *
32724531 CGAGGGTTGCGACAGCAGGATCGACAGCACGCAGTGGGGATCGGGCCGATCCCCGGCTTGCGCAT
1 CGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAAGGGACCGGGCCGATCCCCGGCTTGCGCAT
* * * * * * * *
32724596 TCTGCCTCTCTGGTCGGCTGAGTGCCCGTACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGACT
66 TCTACCTCTCCGGTCGGCTAAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGT
* * * *
32724661 TCATTCCATGTCTAAGCCCCTG-CTGGAC
131 TCATTCCATGTCTAAGCACCAGACCGAAC
* * * * *
32724689 CGAGGGTTGTGGCAGCGGGATCGACAGCACGCAGAAAGGGACCGGGCCGATCCCCAGCTTGTGCG
1 CGAGGGTTGCGGCAGCAGGATCGACAGCACGCAG-AAGGGACCGGGCCGATCCCCGGCTTGCGCA
* * * * *
32724754 TTATACCTCTCCGGTCGACTCAGCGCCCGCACGTTCGTTTCGTGGGTTCAG-TTAGGCATACGGA
65 TTCTACCTCTCCGGTCGGCTAAGCGCCCGCACGCTCGTTTCGTGGGTT-GGCTTAGGCATACGGA
* *
32724818 GTTCATTCCCA-GTGTAAG-ATCAGACCGAAC
129 GTTCATT-CCATGTCTAAGCACCAGACCGAAC
* * * * *
32724848 CAAGGGTTGCGGCAGCAAGATCGACAGCACGTAGGGAGGGACCGGGACCG-TCCCTGGCTTGCGC
1 CGAGGGTTGCGGCAGCAGGATCGACAGCACGCA-GAAGGGACCGGG-CCGATCCCCGGCTTGCGC
* * * * * * * *
32724912 ATTCTACCTCTCCGATCGGCTAAACCCCCGCATGCTCATTTCCTAGGTTGGCTTAGGCATACAGA
64 ATTCTACCTCTCCGGTCGGCTAAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGA
32724977 GTTCATTCCATGTCTAAGCA
129 GTTCATTCCATGTCTAAGCA
32724997 TACAGAGTTC
Statistics
Matches: 248, Mismatches: 51, Indels: 16
0.79 0.16 0.05
Matches are distributed among these distances:
158 37 0.15
159 202 0.81
160 9 0.04
ACGTcount: A:0.19, C:0.29, G:0.30, T:0.22
Consensus pattern (159 bp):
CGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAAGGGACCGGGCCGATCCCCGGCTTGCGCAT
TCTACCTCTCCGGTCGGCTAAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGT
TCATTCCATGTCTAAGCACCAGACCGAAC
Found at i:32724997 original size:26 final size:26
Alignment explanation
Indices: 32724968--32725020 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
32724958 GTTGGCTTAG
32724968 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
32724994 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
32725020 G
1 G
32725021 ATCGGATTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:32725821 original size:158 final size:157
Alignment explanation
Indices: 32725360--32725864 Score: 527
Period size: 158 Copynumber: 3.2 Consensus size: 157
32725350 CCCAGTCTAA
* * * * *
32725360 GCATATGGAGTTCATTCCTAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGTAGGATCGATA
1 GCATATAGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTGCG-CAGCAGGATCGACA
* * ** *
32725425 GCATGCAGGGGGGATCGAGCCGATCCCC-AGCTTGCGCATTCTGCCTCTCCAACCGACTGAGCGC
65 GCATGCAGGGGGGACCGGGCCGATCCCCGA-CTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGC
* **
32725489 CCGCACG-TCCGTTTCATTTGTTGGCTTAG
129 CCGCACGCT-CGTTTCGTGGGTTGGCTTAG
** * * * *
32725518 GCATAGGGAGTTCATTCCATA-TCTAAGCCTCA-ACCAGACCAAGGGTTGTGGCAGCGGGA-CTG
1 GCATATAGAGTTCATTCC-TAGTCTAAG-ATCAGACCAGACCGAGGGTTG-CGCAGCAGGATC-G
* * * ** * * ** *
32725580 GCAGCACGCAGAGGGGGACCAGGCCGATCCATGGCTTGCGCATTATGCCTCTTTGGCCGGCTCAG
62 ACAGCATGCAG-GGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAG
* *
32725645 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAT
126 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* *
32725677 GCATATAGAGTTCATTTCTAGTCTAAGATCAGACCAGACCGAGGGTTGCAGTAGCAGGATCGACA
1 GCATATAGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTGC-GCAGCAGGATCGACA
* * *
32725742 GCATGCAGGGGGGACCGGGCCAATCCCCGACTTGCGCATTCTGCCTCTCCGGCTGGTTGAGCGCC
65 GCATGCAGGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCC
* *
32725807 CGCACGCTTGTTTCGTGGGATGGCTTAG
130 CGCACGCTCGTTTCGTGGGTTGGCTTAG
*
32725835 GCATACAGAGTTCATTCC-ATGTCTAAGATC
1 GCATATAGAGTTCATTCCTA-GTCTAAGATC
32725865 CCGGAGTTCA
Statistics
Matches: 279, Mismatches: 56, Indels: 24
0.78 0.16 0.07
Matches are distributed among these distances:
157 2 0.01
158 153 0.55
159 122 0.44
160 2 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (157 bp):
GCATATAGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTGCGCAGCAGGATCGACAG
CATGCAGGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCC
GCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:32726591 original size:26 final size:26
Alignment explanation
Indices: 32726555--32726606 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
32726545 GTTGACTTAG
*
32726555 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCACTCTAA
*
32726581 GCATACGGAGTTCATTCCCACTCTAA
1 GCATACGGAGTTCATCCCCACTCTAA
32726607 TATCAGATCG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.31, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCACTCTAA
Found at i:32727103 original size:26 final size:26
Alignment explanation
Indices: 32727053--32727105 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
32727043 GTTGGCTTAG
*
32727053 GCATACGAAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCATATCTAA
*
32727079 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGAAGTTCATT-CCATATCTAA
32727105 G
1 G
32727106 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATATCTAA
Found at i:32733592 original size:26 final size:26
Alignment explanation
Indices: 32733563--32733615 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
32733553 GTTGACTTAG
*
32733563 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
32733589 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
32733615 G
1 G
32733616 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:32734126 original size:26 final size:26
Alignment explanation
Indices: 32734090--32734142 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
32734080 GTTGACTTAG
*
32734090 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
32734116 GCATACGGAGTTGATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
32734142 G
1 G
32734143 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:32735267 original size:26 final size:26
Alignment explanation
Indices: 32735217--32735269 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
32735207 GTTGCCTTAG
* *
32735217 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATATCTAA
32735243 GCATACAGAGTTCATTCCCA-ATCTAA
1 GCATACAGAGTTCATT-CCATATCTAA
32735269 G
1 G
32735270 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Found at i:32735476 original size:13 final size:12
Alignment explanation
Indices: 32735443--32735478 Score: 54
Period size: 12 Copynumber: 2.9 Consensus size: 12
32735433 ATGCTGGTAC
*
32735443 TTGGCCCTTATA
1 TTGGCCCCTATA
32735455 TTGGCCCCTATA
1 TTGGCCCCTATA
32735467 TTGGCTCCCTAT
1 TTGGC-CCCTAT
32735479 CCCTCATCAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
12 16 0.73
13 6 0.27
ACGTcount: A:0.14, C:0.31, G:0.17, T:0.39
Consensus pattern (12 bp):
TTGGCCCCTATA
Found at i:32735987 original size:26 final size:26
Alignment explanation
Indices: 32735951--32736003 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
32735941 GTTGACTTAG
32735951 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
*
32735977 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
32736003 G
1 G
32736004 ATCAGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGTCTAA
Found at i:32736344 original size:26 final size:26
Alignment explanation
Indices: 32736295--32736346 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
32736285 TTGGCTTAGA
*
32736295 CATACGGAGTTCATTCCATGTCTAAG
1 CATACGGAGTTCATTCCATATCTAAG
32736321 CATACGGAGTTCATTCCCA-ATCTAAG
1 CATACGGAGTTCATT-CCATATCTAAG
32736347 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCATATCTAAG
Found at i:32736436 original size:19 final size:19
Alignment explanation
Indices: 32736412--32736452 Score: 73
Period size: 19 Copynumber: 2.2 Consensus size: 19
32736402 TTAGGCATAC
32736412 AGAGTTCATCCCCAGTCTA
1 AGAGTTCATCCCCAGTCTA
*
32736431 AGAGTTCATTCCCAGTCTA
1 AGAGTTCATCCCCAGTCTA
32736450 AGA
1 AGA
32736453 TCAGATCAGA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (19 bp):
AGAGTTCATCCCCAGTCTA
Found at i:32737892 original size:158 final size:158
Alignment explanation
Indices: 32737649--32738018 Score: 433
Period size: 158 Copynumber: 2.3 Consensus size: 158
32737639 CTCAACGTCG
* * * * * * *
32737649 GCACGCTCATTTCGTGGGTTGACTTATGTATACGGAGTTCATTCTCAGTCTAAGATCGGATGGGA
1 GCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGAA
* * *
32737714 CCGAGGGTTGCGACAACAGGATCGATAGCACGC-AGAGGGGACCAGGTCGATCCCCGGCTTACGC
66 CCGAGGGTTGCGACAACAGGATCGACAGCACGCAAG-GGGGACCAGGTCGATCCCCGACTTACAC
*
32737778 ATTCTGCCTCTCCAGCCAGTTGAA-CGA-CT
130 ATTCTGCCTCTCCAGCCAGCT-AAGC-ACCT
* *
32737807 GCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGAA
1 GCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGAA
* * * * * * *
32737872 CTGAGGGTTGTGACAGCAGGATCGACAGCGCGCAAGGGGGACCGGGTCGATCCTCGACTTACATA
66 CCGAGGGTTGCGACAACAGGATCGACAGCACGCAAGGGGGACCAGGTCGATCCCCGACTTACACA
* * * * *
32737937 TTCTGCCTTTTCGGTCGGCTAAGCACCT
131 TTCTGCCTCTCCAGCCAGCTAAGCACCT
* *
32737965 GCACGCTTGTTTCGTGAGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAG
1 GCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCA-GTCTAAG
32738019 CCCTAGCTGG
Statistics
Matches: 179, Mismatches: 29, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
157 6 0.03
158 171 0.96
159 2 0.01
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.25
Consensus pattern (158 bp):
GCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGAA
CCGAGGGTTGCGACAACAGGATCGACAGCACGCAAGGGGGACCAGGTCGATCCCCGACTTACACA
TTCTGCCTCTCCAGCCAGCTAAGCACCT
Found at i:32738192 original size:26 final size:26
Alignment explanation
Indices: 32738163--32738215 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
32738153 GTTGACTTAG
32738163 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
32738189 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
32738215 G
1 G
32738216 ATCATTTCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:32738686 original size:26 final size:26
Alignment explanation
Indices: 32738657--32738712 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
32738647 TTTTATGGGT
* *
32738657 TAAGGATACGGAGTTCA-TCCCTAGTC
1 TAAGCATACAGAGTTCATTCCC-AGTC
32738683 TAAGCATACAGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTCATTCCCAGTC
32738709 TAAG
1 TAAG
32738713 ATCAGATTGG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
26 23 0.85
27 4 0.15
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.27
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATTCCCAGTC
Found at i:32738786 original size:497 final size:498
Alignment explanation
Indices: 32738113--32739237 Score: 1338
Period size: 497 Copynumber: 2.2 Consensus size: 498
32738103 GCATATTATG
* * * * ** * *
32738113 CCTCTCCGGCCGACTGAGTGCACGCATGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
1 CCTCTTCGGCCGACTGAGCGCCCGCACGCTCATTTCATGGGTTG--TAAGGCATACGGAGTTCAT
* * * *
32738178 CCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCA-TTTCGAATCGAGAGTTGCGACA
64 -CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATT-GGATCGAGGGTTACGACA
* * * *
32738242 GTAAGATCAGTAGCATGCAGGGGGGATCGGACTGATCCCCGGCTTGCGCATTCAGCCTCTCCTAC
127 GTAAGATCAGTAACATACAGGGGGGATCGGACTGATCCCCAGCTTGCGCATTCAGCCTCTCCGAC
* *
32738307 CGGCTGACCG-CCCCAACGC-CTGTTTCATGGTTTGGCTTAGGCATAGGGAGGTCATTCTATGTC
192 CGGCTGACCGTCCCC-ACGCTC-GTTTCATGGGTTGGCTTAGGCATAGGGAGGTCATTCCATGTC
* * * * * * *
32738370 TAAGCCCCAGTCGGACCGAGGGTTGTGGCAACGGGATCGACAGCACGCAGAGGGGGATCGGGCTG
255 TAAGCCCCAGTCAGACCGAGGGTTGTGGCAACGGAACCGACAGCACACAGAGAGAGATCGGGCCG
* *
32738435 ATCCCC-GACTTGCGCATTATGCCTCTT-CGGTCGGCTCAGTGCCCGCACGCTCGTTTCGTGGGT
320 ATCCCCAG-CTTGCGCATTATGCCT-TTCCGATCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGT
* ** * * * * *
32738498 TAATTTTTGCATACGTAGTTCATTTCGAGTCTAAGATCAGACCAGACCAAGGGTTG-CGCTAGTA
383 TAACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCAAGGGTTGTCGC-AGCA
* * *
32738562 GGATCGACAGCATGCAGGGGGGGATTC-GATCGAT-CCTCAGCTTACGCATTCTG
447 GGATCGACAGCACGCA-GGGGGGA-TCAGATAGATACC-CAGCTTACGCATTCTA
* *
32738615 CCTC-TCTGGTCGACTGAGCGCCCGCACGCTCATTTTATGGG-T-TAAGG-ATACGGAGTTCATC
1 CCTCTTC-GGCCGACTGAGCGCCCGCACGCTCATTTCATGGGTTGTAAGGCATACGGAGTTCATC
* * *
32738676 CCTAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGATTGGATTGAGGGTTACGGCAGT
65 CC-AGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATTGGATCGAGGGTTACGACAGT
* * ** * * *
32738741 AGGATCGGTAACATACAGGGGGGATCGGGTTGATCCCCAGCTTGCGCATTCTGTCTCTCCGATCG
129 AAGATCAGTAACATACAGGGGGGATCGGACTGATCCCCAGCTTGCGCATTCAGCCTCTCCGACCG
* * *
32738806 GCTGAGCGTCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG
194 GCTGACCGTCCCCACGCTCGTTTCATGGGTTGGCTTAGGCATAGGGAGGTCATTCCATGTCTAAG
* * * * *
32738871 CCGCAGTCAGACTGAGGGTTGTGGCAGCGGAACCGATAGCACACAGAGAGAGATTGGGCCGATCC
259 CCCCAGTCAGACCGAGGGTTGTGGCAACGGAACCGACAGCACACAGAGAGAGATCGGGCCGATCC
* * *
32738936 CCAGCTTGTGCATTATGCCTTTCCGATCGGCTCAGCGCCCGCACGCTCGTTTTGTGGGTTGACTT
324 CCAGCTTGCGCATTATGCCTTTCCGATCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTAACTT
* * *
32739001 AGGCATACGGAGTTCATTCCCAATCTAAGATCAGATCGGACCAAGGGTTGTGGCAGCAGGATCGA
389 AGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCAAGGGTTGTCGCAGCAGGATCGA
* *
32739066 CAGCACGCAGGGGGGATCAGATAGGTACCCGGCTTACGCATTCTA
454 CAGCACGCAGGGGGGATCAGATAGATACCCAGCTTACGCATTCTA
* * * *
32739111 CCTCTTCGGCCGGCTGAGCGCCCGCACGTTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT
1 CCTCTTCGGCCGACTGAGCGCCCGCACGCTCATTTCATGGGTT-G-TAAGGCATACGGAGTTCAT
* * * * *
32739176 TCCATGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAAGGTTACGA
64 CCCA-GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATTGGATCGAGGGTTACGA
32739238 TAGCAGGACC
Statistics
Matches: 526, Mismatches: 80, Indels: 35
0.82 0.12 0.05
Matches are distributed among these distances:
495 2 0.00
496 64 0.12
497 345 0.66
498 13 0.02
500 5 0.01
501 67 0.13
502 30 0.06
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.25
Consensus pattern (498 bp):
CCTCTTCGGCCGACTGAGCGCCCGCACGCTCATTTCATGGGTTGTAAGGCATACGGAGTTCATCC
CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATTGGATCGAGGGTTACGACAGTAA
GATCAGTAACATACAGGGGGGATCGGACTGATCCCCAGCTTGCGCATTCAGCCTCTCCGACCGGC
TGACCGTCCCCACGCTCGTTTCATGGGTTGGCTTAGGCATAGGGAGGTCATTCCATGTCTAAGCC
CCAGTCAGACCGAGGGTTGTGGCAACGGAACCGACAGCACACAGAGAGAGATCGGGCCGATCCCC
AGCTTGCGCATTATGCCTTTCCGATCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTAACTTAG
GCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCAAGGGTTGTCGCAGCAGGATCGACA
GCACGCAGGGGGGATCAGATAGATACCCAGCTTACGCATTCTA
Found at i:32739071 original size:159 final size:158
Alignment explanation
Indices: 32738686--32739187 Score: 454
Period size: 158 Copynumber: 3.2 Consensus size: 158
32738676 CCTAGTCTAA
* * * ** * *
32738686 GCATACAGAGTTCATTCCCAGTCTAAGATCAGATTGGATTGAGGGTTACGGCAGTAGGATCGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTGTGGCAGCAGGATCGATA
* * * * ** * * * *
32738751 ACATACAGGGGGGATCGGGTTGATCCCCAGCTTGCGCATTCTGTCTCTCCGATCGGCTGAGCGTC
66 GCACACAGGAGAGATCGGGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGATCGGCTCAGCGCC
*
32738816 CGCACGCTCGTTTCATGGGTTGGCTTAG
131 CGCACGCTCGTTTCATGGGTTGACTTAG
* ** * *
32738844 GCATAGGGAGTTCATT-CCATGTCTAAGCCGCAG-TCAGACTGAGGGTTGTGGCAGC-GGAACCG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGATCGGACTGAGGGTTGTGGCAGCAGG-ATCG
* * *
32738906 ATAGCACACAGAGAGAGATTGGGCCGATCCCCAGCTTGTGCATTATGCCTTTCCGATCGGCTCAG
63 ATAGCACACAG-GAGAGATCGGGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGATCGGCTCAG
**
32738971 CGCCCGCACGCTCGTTTTGTGGGTTGACTTAG
127 CGCCCGCACGCTCGTTTCATGGGTTGACTTAG
* ** *
32739003 GCATACGGAGTTCATTCCCAATCTAAGATCAGATCGGACCAAGGGTTGTGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTGTGGCAGCAGGATCGATA
* * * * *** * * * * * * * ** *
32739068 GCACGCAGGGGGGATCAGATAGGTACCCGGCTTACGCATTCTACCTCTTCGGCCGGCTGAGCGCC
66 GCACACAGGAGAGATCGGGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGATCGGCTCAGCGCC
* * * *
32739133 CGCACGTTCATTTCGTGGGTTGGCTTAG
131 CGCACGCTCGTTTCATGGGTTGACTTAG
32739161 GCATACGGAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
32739188 CATATGGAGT
Statistics
Matches: 274, Mismatches: 62, Indels: 16
0.78 0.18 0.05
Matches are distributed among these distances:
157 8 0.03
158 135 0.49
159 126 0.46
160 5 0.02
ACGTcount: A:0.21, C:0.25, G:0.30, T:0.25
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTGTGGCAGCAGGATCGATA
GCACACAGGAGAGATCGGGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGATCGGCTCAGCGCC
CGCACGCTCGTTTCATGGGTTGACTTAG
Found at i:32739186 original size:158 final size:159
Alignment explanation
Indices: 32738798--32739189 Score: 407
Period size: 159 Copynumber: 2.5 Consensus size: 159
32738788 ATTCTGTCTC
* * * *
32738798 TCCGATCGGCTGAGCGTCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCA
1 TCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCA
* ** * **
32738863 TGTCTAAGCCGCAGTCAGACTGAGGGTTGTGGCAGCGGAACCGATAGCACACAGAGAGAGATTGG
66 TGTCTAAGCAGCAGTCAGACCAAGGGTTGTGGCAGCGGAACCGACAGCACACAGAGAGAGATCAG
* * * ** *
32738928 GCCGATCCCCAGCTTGTGCATTATGCCTT
131 ACAGATACCCAGCTTACGCATTATACCTT
* * * *
32738957 TCCGATCGGCTCAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
1 TCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CC
* * * * * * *
32739022 A-ATCTAAG-ATCAGATCGGACCAAGGGTTGTGGCAGCAGG-ATCGACAGCACGCAG-GGGGGAT
65 ATGTCTAAGCAGCAG-TCAGACCAAGGGTTGTGGCAGC-GGAACCGACAGCACACAGAGAGAGAT
* * * *
32739083 CAGATAGGTACCCGGCTTACGCATTCTACCTCT
128 CAGACAGATACCCAGCTTACGCATTATACCT-T
* * *
32739116 T-CGGCCGGCTGAGCGCCCGCACGTTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCA
1 TCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCA
32739180 TGTCTAAGCA
66 TGTCTAAGCA
32739190 TATGGAGTTC
Statistics
Matches: 190, Mismatches: 37, Indels: 12
0.79 0.15 0.05
Matches are distributed among these distances:
157 3 0.02
158 86 0.45
159 96 0.51
160 5 0.03
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (159 bp):
TCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCA
TGTCTAAGCAGCAGTCAGACCAAGGGTTGTGGCAGCGGAACCGACAGCACACAGAGAGAGATCAG
ACAGATACCCAGCTTACGCATTATACCTT
Found at i:32739197 original size:26 final size:26
Alignment explanation
Indices: 32739161--32739213 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32739151 GTTGGCTTAG
32739161 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
32739187 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
32739213 G
1 G
32739214 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:32740076 original size:26 final size:26
Alignment explanation
Indices: 32740046--32740098 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
32740036 GTTGACTTAG
32740046 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* * *
32740072 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
32740098 G
1 G
32740099 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:32740551 original size:158 final size:158
Alignment explanation
Indices: 32740072--32740573 Score: 446
Period size: 158 Copynumber: 3.2 Consensus size: 158
32740062 CCCAGTCTAA
* * *
32740072 GCATACGGAGTTTATTCCCAGTCTAAGATC-GGACTGGACCGAGGGTTGCTGCAGCAGGATCTG-
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGG-CTGGACCGAGGGTTTCAGCAGCAGGATC-GA
* * **
32740135 TAGCACAC-AGGGGGGATTGGGCTGTTCCCC-AGCTTGCACATTCTGCCTCTCC-AGCCGACTGA
64 TAGCAC-CTAGAGGGGATTGGGCTGATCCCCGA-CTTGTGCATTCTGCCTCTCCGA-CCGACTGA
* * *
32740197 GCGCCCACACACCCGTTTCGTGGGTTGGCTTAG
126 GCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * ** * * * *
32740230 GCATAGGGAGTTCATT-CAATGTCTAAGCCCCA-GTTGGACCGAGGGTTGT-GGCAGTAGGATCA
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGGCTGGACCGAGGGTT-TCAGCAGCAGGATCG
* * ** * * * *
32740292 ACAGCACGTAGAGGGGGATTGGGCCAATCCCCGACTTGTGCATTATGCCTCTTCGATCGACTCAG
63 ATAGCACCTAGA-GGGGATTGGGCTGATCCCCGACTTGTGCATTCTGCCTCTCCGACCGACTGAG
* ** * * * * *
32740357 CACTAGCATGCTCATTTCATGGGTTGACTTAT
127 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* ** * *
32740389 GCATACGGAGTTCATTCCCAGTCCAAGATCAGGCCAGACCAAGGCTTTCAGCAGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGGCTGGACCGAGGGTTTCAGCAGCAGGATCGATA
* * * *
32740454 GCACCTAGAGGGGATCGAGCTGACCCCCGACTTGTGCATTCTACCTCTCCGACCGACTGAGCGCC
66 GCACCTAGAGGGGATTGGGCTGATCCCCGACTTGTGCATTCTGCCTCTCCGACCGACTGAGCGCC
32740519 CGCACGCTCGTTTCGTGGGTTGGCTTAG
131 CGCACGCTCGTTTCGTGGGTTGGCTTAG
* *
32740547 GCATACGTAGTTGATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
32740574 CATATTGAGT
Statistics
Matches: 262, Mismatches: 69, Indels: 26
0.73 0.19 0.07
Matches are distributed among these distances:
157 5 0.02
158 140 0.53
159 113 0.43
160 4 0.02
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGGCTGGACCGAGGGTTTCAGCAGCAGGATCGATA
GCACCTAGAGGGGATTGGGCTGATCCCCGACTTGTGCATTCTGCCTCTCCGACCGACTGAGCGCC
CGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:32740945 original size:26 final size:26
Alignment explanation
Indices: 32740915--32740967 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
32740905 GTTGACATAG
*
32740915 GCATACGAAGTTTATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
32740941 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
32740967 G
1 G
32740968 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:32741364 original size:869 final size:871
Alignment explanation
Indices: 32740019--32742338 Score: 2566
Period size: 869 Copynumber: 2.7 Consensus size: 871
32740009 TTGAGCACCC
* *
32740019 GCACACTCA-TTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACGGAGT
1 GCACGCTCATTTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACGAAGT
* * * * *
32740083 TTATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCTGCAGCAGGATCTGTAGCACACAGGGG
66 TCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTG-TGTAGCAGGATC-GCAGCACGCAGGGG
* * * * *
32740148 GGATTGGGCTGTTCCCCAGCTTGCACATTCTGCCTCTCC-AGCCGACTGAGCGCCCACACACCCG
129 GGATCGGGCTGATCCCCAGCTTGCGCATTCTGCCTCTCCGA-CCGACTGAGCACCCGCACACCCG
* **
32740212 TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCAATGTCTAAGCCCCAGTTGGACCGAGGGTT
193 TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGA-CGAGGGTT
* *** ** *
32740277 GTGGCAGT-AGGATCAACAGCACGTAGAGGGGGATTGGGCCAATCCCCGACTTGTGCATTATGCC
257 GTGGCAGTGA-GACCGGTAGCACGTAGAGGGGGACCGGGCCAATCCCCGACTTGCGCATTATGCC
* * * *
32740341 TCTTCGATCGACTCAGCACTAGCATGCTCATTTCATGGGTTGACTTATGCATACGGAGTTCATTC
321 TCTTCGACCGGCTCAGC-GTTGCATGCTCATTTCATGGGTTGACTTATGCATACGGAGTTCATTC
* * * * * *
32740406 CCAGTCCAAGATCAGGCCAGACCAAGGCTTTCAGCAGCAGGATCGATAGCAC-CTA-GAGGGGAT
385 CCAGTCAAAGATCAGACCAGACCGAGGGTTACAGCAGCAGGATCGACAGCACGC-AGGA-GGGAT
* * * * * *
32740469 CGAG-CTGACCCCCGACTTGTGCATTCTACCTCTCCGACCGACTGAGCGCCCGCACGCTCGTTTC
448 CGGGTC-GATCCCCGGCTTGCGCATTCTACCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTC
* * ** *
32740533 GTGGGTTGGCTTAGGCATACGTAGTTGATTCCATGTCTAAGCATATTGAGTTCATTCCCAGTCTA
512 GTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAATCTA
* * * * * *
32740598 AGAAT-GGATCGGACCAAGGGTTGCAGCAGTAGGACTAGTAGCAGGATC-GGCAGACGCAGAGGG
577 AGAATCAGAACGGACCAAGGGTTGCAGCAGCAGGACCAGTAGCAGGATCAGGAACACGCAG-GGG
* *** *
32740661 GGATC-GAGCTGAAGTTCGACTTGCATATTCTGCCACTCCAACCGGTTGAGCGCCCGCACGCTCA
641 GGACCAGA-CTGAACCCCGACTTGCATATTCTGCCACTCCAACCGGTTGAGCACCCGCACGCTCA
** * * * *
32740725 TTTTGTAGGTTGGCTTAGGCATACATAGTTCATTCCACGTCT-AAGCCTGAGTCAGACCGAGGGT
705 TTTCATAGGTTAGCTTAGGCATACAGAGTTCATTCCACGTCTAAACCCT-AGTCAGACCGACGGT
* * * * * * * * * *
32740789 TGTGGTAGCAGGATCGATAGTGGGATCGAC-GACATGCTGAAGGGGACCAGGTTGATCCTCAGCT
769 TGTGGCAGCAGGACCAACAGTAGGATCGACAG-CACGCAGAAGGGGACC-GGCTGATCCCCAACT
**
32740853 TGCGCATTATGCCTCTCTGGTCGG-C-T-GAAC-G-T-CT
832 TGCGCATTATGCCTCTCTGACCGGCCTTCGAACGGCTACT
* * *
32740887 GCACGCTCATTTTTATGGGTTGACATAGGCATACGAAGTTTATCCCCAGTCTAAGCATACGAAGT
1 GCACGCTCATTTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACGAAGT
* * *
32740952 TCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGTGGTAGCAGGATCGACAGCACGCAAGGG
66 TCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGT-GTAGCAGGATCG-CAGCACGCAGGGG
* ** * * ** * *
32741017 GGACCGATCTGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCTCTTGCACGCCCAT
129 GGATCGGGCTGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCACCCGCACACCCGT
32741082 TTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAGGGTTG
194 TTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGA-CGAGGGTTG
* * * * * * * *
32741147 TGGCAGTGAGACCGGTAGCATGCAAAGAGGGACCGGGTCGATCCCTGGCTTGCGCATTATGCCTC
258 TGGCAGTGAGACCGGTAGCACGTAGAGGGGGACCGGGCCAATCCCCGACTTGCGCATTATGCCTC
* * * * *
32741212 -TCTGACCGGCTCAGCGTTCGCACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCC
323 TTC-GACCGGCTCAGCGTT-GCATGCTCATTTCATGGGTTGACTTATGCATACGGAGTTCATTCC
* * * * * * *
32741276 CAGTCTAAGATCAGATCGGACCGAGGGTTACGGTAGCAGGATTGACAGCACGCAGGAGGGACCGG
386 CAGTCAAAGATCAGACCAGACCGAGGGTTACAGCAGCAGGATCGACAGCACGCAGGAGGGATCGG
* * * * * * * *
32741341 GTCGGTCCCTGGCTTGCGCATTCTACCTCTCTGGTCGGTTGAGCGCCCGCACACTCATTTCATGG
451 GTCGATCCCCGGCTTGCGCATTCTACCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGG
* * *
32741406 GTTGGCTTAGCCATACGGAGTTCATTCCATTTCTAAGCATACAGATTTCATTCCCAATCTAAG-A
516 GTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAATCTAAGAA
* * * *
32741470 TCAGAACGGACCGAGGGTTGCAGCAGCAGGACCCGTAGTAGGATCAGGAACACGTAGGGGGGACC
581 TCAGAACGGACCAAGGGTTGCAGCAGCAGGACCAGTAGCAGGATCAGGAACACGCAGGGGGGACC
* * * *
32741535 AGACTGATCCCCGGCTTGCATATTCTGCCTCTCCGACCGGTTGAGCACCCGCACGCTCATTTCAT
646 AGACTGAACCCCGACTTGCATATTCTGCCACTCCAACCGGTTGAGCACCCGCACGCTCATTTCAT
* * * * *
32741600 GGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAACCCTAGTCGGACCGACGGTTGTGGCG
711 AGGTTAGCTTAGGCATACAGAGTTCATTCCACGTCTAAACCCTAGTCAGACCGACGGTTGTGGCA
* *
32741665 GCAGGACCAACAGTAGGATCGACAGCACGCAGACGGGGATCGGCTGATCCCCAACTTGCGCATTA
776 GCAGGACCAACAGTAGGATCGACAGCACGCAGAAGGGGACCGGCTGATCCCCAACTTGCGCATTA
* *
32741730 TGCCTCTCTGACCGGCCTTTTCGACCGGCTGAGT
841 TGCCTCTCTGACCGGCC--TTCGAACGGCT-ACT
* *
32741764 GCCCGCATTC-TCATTTCGTGGGTTGACTTAGGCATAC-AGAGTTCATCCCCAGTCTAAGCATAC
1 GCACGC--TCAT--TTTCATGGGTTGACTTAGGCATACGA-AGTTCATCCCCAGTCTAAGCATAC
* * * *
32741827 GAAGTTCATTACCAGTGTAAGATCGGACCGGATCGA-GG--GT-T-GC---A-C-CAGCACGTAG
61 GAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGTAGCAGGATCGCAGCACGCAG
* * * * * * *
32741882 GGGGGATCGGGCCGATCCTCGGCTTGCGCATTCTGGCACTCCGACCAACTGAGCACCCGCACACT
126 GGGGGATCGGGCTGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCACCCGCACACC
* * * **
32741947 TGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCCA-GTCAAAG-ATCAGACCGGACTGAG
191 CGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCGGAC-GAG
* * *
32742010 GGTTGTGGCAGCGAGACCGGTAGCACGTAGAGGGGGACCAGGCCAATCCCCGACTTACGCATTAT
253 GGTTGTGGCAGTGAGACCGGTAGCACGTAGAGGGGGACCGGGCCAATCCCCGACTTGCGCATTAT
* *
32742075 GCCTCTTCGACCGGCTCAGTGCTTGCATACTCATTTCATGGGTTGACTTATGCATACGGAGTTCA
318 GCCTCTTCGACCGGCTCAGCG-TTGCATGCTCATTTCATGGGTTGACTTATGCATACGGAGTTCA
* * * *
32742140 TTCCCTA-TCAAAGATCAGACCAAACTGAGGGTTGCAGCGGCAGGATCGACAGCACGCATGGAGG
382 TTCCC-AGTCAAAGATCAGACCAGACCGAGGGTTACAGCAGCAGGATCGACAGCACGCA-GGAGG
* * * *
32742204 GATCAGGTCGATCCCCGGCTTGCACATTCTACCTCTTCGGCCGGCTGAGCGCTCGCACGCTCGTT
445 GATCGGGTCGATCCCCGGCTTGCGCATTCTACCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTT
* * * * *
32742269 TCGTGGGTTGGCTTAGGCATACGGAGTCCTTTCCATGTCTAAGCATACGGAGTACATTTCCAATC
510 TCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAATC
32742334 TAAGA
575 TAAGA
32742339 TTTTGAGCCA
Statistics
Matches: 1199, Mismatches: 216, Indels: 72
0.81 0.15 0.05
Matches are distributed among these distances:
867 4 0.00
868 306 0.26
869 767 0.64
870 23 0.02
871 1 0.00
872 1 0.00
873 3 0.00
874 3 0.00
875 2 0.00
877 8 0.01
878 1 0.00
879 5 0.00
880 75 0.06
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.24
Consensus pattern (871 bp):
GCACGCTCATTTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACGAAGT
TCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGTAGCAGGATCGCAGCACGCAGGGGGG
ATCGGGCTGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCACCCGCACACCCGTTT
CGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACGAGGGTTGTGG
CAGTGAGACCGGTAGCACGTAGAGGGGGACCGGGCCAATCCCCGACTTGCGCATTATGCCTCTTC
GACCGGCTCAGCGTTGCATGCTCATTTCATGGGTTGACTTATGCATACGGAGTTCATTCCCAGTC
AAAGATCAGACCAGACCGAGGGTTACAGCAGCAGGATCGACAGCACGCAGGAGGGATCGGGTCGA
TCCCCGGCTTGCGCATTCTACCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGG
CTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAATCTAAGAATCAGA
ACGGACCAAGGGTTGCAGCAGCAGGACCAGTAGCAGGATCAGGAACACGCAGGGGGGACCAGACT
GAACCCCGACTTGCATATTCTGCCACTCCAACCGGTTGAGCACCCGCACGCTCATTTCATAGGTT
AGCTTAGGCATACAGAGTTCATTCCACGTCTAAACCCTAGTCAGACCGACGGTTGTGGCAGCAGG
ACCAACAGTAGGATCGACAGCACGCAGAAGGGGACCGGCTGATCCCCAACTTGCGCATTATGCCT
CTCTGACCGGCCTTCGAACGGCTACT
Done.