Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 358 of 402
Found at i:32741407 original size:158 final size:159
Alignment explanation
Indices: 32740941--32741433 Score: 557
Period size: 158 Copynumber: 3.1 Consensus size: 159
32740931 CCCAGTCTAA
* *
32740941 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGTGGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGTAGCAGGATCGACA
* ** * *
32741006 GCACGCAAGG-GGGACC-GATCTGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCT
66 GCACGCAAGGAGGGACCGGGTC-GATCCCTGGCTTGCGCATTCTGCCTCTCTGACCGGCTGAGCG
* *
32741069 CTTGCACGCCCATTTCGTGGGTTGGCTTAG
130 CTCGCACGCTCATTTCGTGGGTTGGCTTAG
* ** * * * *
32741099 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCGGATCGAGGGTTGTGGCAG-TGAGACCG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTGTGGTAGCAG-GATCG
** * * * *
32741161 GTAGCATGCAAAGAGGGACCGGGTCGATCCCTGGCTTGCGCATTATGCCTCTCTGACCGGCTCAG
63 ACAGCACGCAAGGAGGGACCGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTCTGACCGGCTGAG
* * **
32741226 CGTTCGCACGCTCGTTTCGTGGGTTAACTTAG
128 CGCTCGCACGCTCATTTCGTGGGTTGGCTTAG
* ** *
32741258 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTACGGTAGCAGGATTGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGTAGCAGGATCGACA
* * ** *
32741323 GCACGC-AGGAGGGACCGGGTCGGTCCCTGGCTTGCGCATTCTACCTCTCTGGTCGGTTGAGCGC
66 GCACGCAAGGAGGGACCGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTCTGACCGGCTGAGCGC
* * *
32741387 CCGCACACTCATTTCATGGGTTGGCTTAG
131 TCGCACGCTCATTTCGTGGGTTGGCTTAG
*
32741416 CCATACGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
32741434 ATTTCTAAGC
Statistics
Matches: 271, Mismatches: 56, Indels: 16
0.79 0.16 0.05
Matches are distributed among these distances:
157 4 0.01
158 144 0.53
159 116 0.43
160 7 0.03
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGTAGCAGGATCGACA
GCACGCAAGGAGGGACCGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTCTGACCGGCTGAGCGC
TCGCACGCTCATTTCGTGGGTTGGCTTAG
Found at i:32741841 original size:26 final size:26
Alignment explanation
Indices: 32741795--32741847 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
32741785 GTTGACTTAG
*
32741795 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCACCAGTCTAA
* *
32741821 GCATAC-GAAGTTCATTACCAGTGTAA
1 GCATACAG-AGTTCATCACCAGTCTAA
32741847 G
1 G
32741848 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCACCAGTCTAA
Found at i:32742194 original size:159 final size:159
Alignment explanation
Indices: 32741939--32742295 Score: 387
Period size: 159 Copynumber: 2.2 Consensus size: 159
32741929 ACTGAGCACC
** * **
32741939 CGCACACTTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCCAGTCAAAGATCAGACCGG
1 CGCACACTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCAAAGATCAGACCAA
** ** * *
32742004 ACTGAGGGTTGTGGCAGCGAGACCGGTAGCACGTA-GAGGGGGACCAGGCCAATCCCCGACTTAC
66 ACTGAGGGTTGCAGCAGCGAGACCGACAGCACGCATG-GAGGGACCAGGCCAATCCCCGACTTAC
* * *
32742068 GCATTATGCCTCTTCGACCGGCTCAGTGCT
130 ACATTATACCTCTTCGACCGGCTCAGCGCT
* * * *
32742098 TGCATACTCATTTCATGGGTTGACTTATGCATACGGAGTTCATTCCCTA-TCAAAGATCAGACCA
1 CGCACACTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCC-AGTCAAAGATCAGACCA
* * * * * * *
32742162 AACTGAGGGTTGCAGCGGC-AGGATCGACAGCACGCATGGAGGGATCAGGTCGATCCCCGGCTTG
65 AACTGAGGGTTGCAGCAGCGA-GACCGACAGCACGCATGGAGGGACCAGGCCAATCCCCGACTTA
* * *
32742226 CACATTCTACCTCTTCGGCCGGCTGAGCGCT
129 CACATTATACCTCTTCGACCGGCTCAGCGCT
* * *
32742257 CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGT
1 CGCACACTCATTTCATGGGTTGGCTTAGGCATACGGAGT
32742296 CCTTTCCATG
Statistics
Matches: 160, Mismatches: 35, Indels: 6
0.80 0.17 0.03
Matches are distributed among these distances:
158 1 0.01
159 157 0.98
160 2 0.01
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (159 bp):
CGCACACTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCAAAGATCAGACCAA
ACTGAGGGTTGCAGCAGCGAGACCGACAGCACGCATGGAGGGACCAGGCCAATCCCCGACTTACA
CATTATACCTCTTCGACCGGCTCAGCGCT
Found at i:32742335 original size:26 final size:26
Alignment explanation
Indices: 32742285--32742337 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
32742275 GTTGGCTTAG
* *
32742285 GCATACGGAGTCCTTTCCATGTCTAA
1 GCATACGGAGTCATTTCCATATCTAA
32742311 GCATACGGAGTACATTTCCA-ATCTAA
1 GCATACGGAGT-CATTTCCATATCTAA
32742337 G
1 G
32742338 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 17 0.71
27 7 0.29
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTCATTTCCATATCTAA
Found at i:32743044 original size:26 final size:26
Alignment explanation
Indices: 32742996--32743047 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
32742986 GTTGACTTAG
* *
32742996 GCATACGGAGTTCATCCCAAGTCTAA
1 GCATACGAAGTTCATCACAAGTCTAA
32743022 GCATACGAAGTTCATTCAC-AGTCTAA
1 GCATACGAAGTTCA-TCACAAGTCTAA
32743048 AATCAAATCG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCACAAGTCTAA
Found at i:32743377 original size:27 final size:26
Alignment explanation
Indices: 32743339--32743392 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 26
32743329 GTTGACTTAG
32743339 GCATACGAAGTTC-ATTCCCCAGTCTAA
1 GCATACGAAGTTCAATT--CCAGTCTAA
*
32743366 GCATACGGAGTTCAATTCCAGTCTAA
1 GCATACGAAGTTCAATTCCAGTCTAA
32743392 G
1 G
32743393 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
26 10 0.40
27 12 0.48
28 3 0.12
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCAATTCCAGTCTAA
Found at i:32743571 original size:344 final size:344
Alignment explanation
Indices: 32742971--32743700 Score: 903
Period size: 344 Copynumber: 2.1 Consensus size: 344
32742961 GAGCGCCAGT
**
32742971 ACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCA-TCCCAAGTCTAAGCATACGAAGTTC
1 ACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAAGTCTAAGCATACGAAGTTC
* *** * * * *
32743035 ATTCACAGTCTAAAATCAAATCGGATTGAGTGTTGCGATAGCAGGATCGATAGCTCGTAGGGGAG
66 ATTCACAGTCTAAAATCAAATCAGACCAAGTGTTGAGACAGCAGGATCGACAGCACGTAGGGGAG
* * * * * * *
32743100 ACCGGGTCGATCCTTGGCTTGCACATTCTACCTTTCTGGCCGGTTGAGTGCCCACACGCCCGTTT
131 ACCGGGTCGATCCTCGGCTTGCACATTCTACCTCTCCGACCGGCTAAGTGCCCACACGCCCATTT
* * * *
32743165 CGTGCGTTGGCTTGGGCATAGGGGGTTCATTCCATGTCTAAGCCCCAGCCAGATCGAGGGTTGTG
196 CATGCGTTGGCTTGGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAGGGTTGTG
* *
32743230 GCAACGGGATCGACAGCATGCAGAGGGGGATTGGGTCGATCCCCGGCTAGCGCATTATGCCTCTC
261 GCAACGGGATCGACAGCACGCAGAGGGGGATCGGGTCGATCCCCGGCTAGCGCATTATGCCTCTC
* *
32743295 CGGTAAGCTCAGTGCCCCC
326 CGGCAAGCTCAGCGCCCCC
* * * *
32743314 ATGCTCGTTTTGTGGGTTGACTTAGGCATACGAAGTTCATTCCCCAGTCTAAGCATACGGAGTTC
1 ACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAAGTCTAAGCATACGAAGTTC
* **
32743379 AATTC-CAGTCTAAGATCGGATCAGACCAAGTGTTGTAG-CAGCAGGATCGACAGCACGTAGGGG
66 -ATTCACAGTCTAAAATCAAATCAGACCAAGTGTTG-AGACAGCAGGATCGACAGCACGTAGGGG
* ** * *
32743442 CA-ACCGGGTCGATTCTCGGCTTGTGCATTCTGCCTCTCCGACCGGCTAAGTGCCCGCACGCCCA
129 -AGACCGGGTCGATCCTCGGCTTGCACATTCTACCTCTCCGACCGGCTAAGTGCCCACACGCCCA
* * *
32743506 TTTCATGGGTTGGCTTGGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAG-CTGAACCAAGGGT
193 TTTCATGCGTTGGCTTGGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAG-ACCAAGGGT
** * * * * *
32743570 TGTGGCAGTGGGATCGGCAGCACGTAGAGGGTGATCGGGTTGATCCCCGGCTTGCGCATTATGCC
257 TGTGGCAACGGGATCGACAGCACGCAGAGGGGGATCGGGTCGATCCCCGGCTAGCGCATTATGCC
* ** * *
32743635 TCTCTGGCCGGCTTAGCGCCCGC
322 TCTCCGGCAAGCTCAGCGCCCCC
* *
32743658 ACGCTCGTTTTGTGGGTTAACTTAGTCATACGGAGTTCATTCC
1 ACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCC
32743701 TATTCTAAGA
Statistics
Matches: 326, Mismatches: 56, Indels: 9
0.83 0.14 0.02
Matches are distributed among these distances:
343 37 0.11
344 283 0.87
345 6 0.02
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.26
Consensus pattern (344 bp):
ACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAAGTCTAAGCATACGAAGTTC
ATTCACAGTCTAAAATCAAATCAGACCAAGTGTTGAGACAGCAGGATCGACAGCACGTAGGGGAG
ACCGGGTCGATCCTCGGCTTGCACATTCTACCTCTCCGACCGGCTAAGTGCCCACACGCCCATTT
CATGCGTTGGCTTGGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAGGGTTGTG
GCAACGGGATCGACAGCACGCAGAGGGGGATCGGGTCGATCCCCGGCTAGCGCATTATGCCTCTC
CGGCAAGCTCAGCGCCCCC
Found at i:32743832 original size:158 final size:157
Alignment explanation
Indices: 32743366--32743867 Score: 528
Period size: 158 Copynumber: 3.2 Consensus size: 157
32743356 CCCAGTCTAA
* * *
32743366 GCATACGGAGTTCAATTCCA-GTCTAAGATCGGATCAGACCAAGTGTTGTAGCAGCAGGATCGAC
1 GCATACGGAGTTC-ATTCCATGTCTAAGATCAGA-CAGACCAAGGGTTGTGGCAGCAGGATCGAC
* * * * * *
32743430 AGCACGTAGGGGCAACCGGGTCGATTCTCGGCTTGTGCATTCTGCCTCTCCGACCGGCTAAGTGC
64 AGCACGTAGGGGCGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCTGACCGGCTAAGCGC
*
32743495 CCGCACGCCCATTTCATGGGTTGGCTTGG
129 CCGCACGCCTATTTCATGGGTTGGCTTGG
* ** * ** *
32743524 GCATAGGGAGTTCATTCCATGTCTAAGCCCTAG-CTGAACCAAGGGTTGTGGCAGTGGGATCGGC
1 GCATACGGAGTTCATTCCATGTCTAAGATC-AGACAG-ACCAAGGGTTGTGGCAGCAGGATCGAC
* * * * * *
32743588 AGCACGTAGAGGGTGATCGGGTTGATCCCCGGCTTGCGCATTATGCCTCTCTGGCCGGCTTAGCG
64 AGCACGTAG-GGGCGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCTGACCGGCTAAGCG
* ** *
32743653 CCCGCACGCTCGT-TTT-GTGGGTTAACTTAG
128 CCCGCACGC-C-TATTTCATGGGTTGGCTTGG
* * * * *
32743683 TCATACGGAGTTCATTCCTAT-TCTAAGATCAGACCAGACCGAGGGTTCTGGTAGCATGATCGAC
1 GCATACGGAGTTCATTCC-ATGTCTAAGATCAGA-CAGACCAAGGGTTGTGGCAGCAGGATCGAC
* * * * * *
32743747 AGCACGCAGGGGGGACCGGGTCGATCCCCGACTTGCGCATTCTACCTCTCTGATCGGCTGAGCGC
64 AGCACGTAGGGGCGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCTGACCGGCTAAGCGC
*
32743812 CTGCACGCCTATTTCATGGGTTGGCTTGG
129 CCGCACGCCTATTTCATGGGTTGGCTTGG
*
32743841 GCATAGGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
32743868 CCCTAGCTGG
Statistics
Matches: 276, Mismatches: 56, Indels: 24
0.78 0.16 0.07
Matches are distributed among these distances:
156 1 0.00
157 14 0.05
158 139 0.50
159 114 0.41
160 8 0.03
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.25
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACAGACCAAGGGTTGTGGCAGCAGGATCGACAG
CACGTAGGGGCGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCTGACCGGCTAAGCGCCC
GCACGCCTATTTCATGGGTTGGCTTGG
Found at i:32743909 original size:158 final size:158
Alignment explanation
Indices: 32743410--32744017 Score: 555
Period size: 159 Copynumber: 3.8 Consensus size: 158
32743400 CAGACCAAGT
* * * * * *
32743410 GTTGTAGCAGCAGGATCGACAGCACGTAGGGGCAACCGGGTCGATTCTCGGCTTGTGCATTCTGC
1 GTTGTGGCAGCAGGATCGACAGCACGCAGGGGGAACCGGGTCGATCCCCGGCTTGCGCATTCTGC
* * *
32743475 CTCTCCGACCGGCTAAGTGCCCGCACGCCCATTTCATGGGTTGGCTTGGGCATAGGGAGTTCATT
66 CTCTCTGACCGGCTAAGCGCCCGCACGCCTATTTCATGGGTTGGCTTGGGCATAGGGAGTTCATT
* *
32743540 CCATGTCTAAGCCCTAGCTGAACCAAGG
131 CCATGTCTAAGCCCTAGCTGGACCGAGG
** * * * * *
32743568 GTTGTGGCAGTGGGATCGGCAGCACGTAGAGGGTG-ATCGGGTTGATCCCCGGCTTGCGCATTAT
1 GTTGTGGCAGCAGGATCGACAGCACGCAG-GGG-GAACCGGGTCGATCCCCGGCTTGCGCATTCT
* * * ** * * *
32743632 GCCTCTCTGGCCGGCTTAGCGCCCGCACGCTCGT-TTT-GTGGGTTAACTTAGTCATACGGAGTT
64 GCCTCTCTGACCGGCTAAGCGCCCGCACGC-C-TATTTCATGGGTTGGCTTGGGCATAGGGAGTT
** **
32743695 CATTCCTAT-TCTAAGATC-AGACCAGACCGAGG
127 CATTCC-ATGTCTAAGCCCTAG-CTGGACCGAGG
* * * * * *
32743727 GTTCTGGTAGCATGATCGACAGCACGCAGGGGGGACCGGGTCGATCCCCGACTTGCGCATTCTAC
1 GTTGTGGCAGCAGGATCGACAGCACGCAGGGGGAACCGGGTCGATCCCCGGCTTGCGCATTCTGC
* * *
32743792 CTCTCTGATCGGCTGAGCGCCTGCACGCCTATTTCATGGGTTGGCTTGGGCATAGGGAGTTCATT
66 CTCTCTGACCGGCTAAGCGCCCGCACGCCTATTTCATGGGTTGGCTTGGGCATAGGGAGTTCATT
*
32743857 CCATGTCTAAGCCCTAGCTGGACTGAGG
131 CCATGTCTAAGCCCTAGCTGGACCGAGG
* * * * * * **
32743885 GTTGTGGCAGCGGGACCGATAGCACGCAAAGGGGAACCGGGCCGATCCCTGGCTAACGCATTAC-
1 GTTGTGGCAGCAGGATCGACAGCACGC-AGGGGGAACCGGGTCGATCCCCGGCTTGCGCATT-CT
* * * * ** * * * * *
32743949 GCCTCTCCGGCCGGCTCAGTGCTGGTACG-CTCGTTTCATGGGTTGACTTAGGCATATGGAGTTC
64 GCCTCTCTGACCGGCTAAGCGCCCGCACGCCT-ATTTCATGGGTTGGCTTGGGCATAGGGAGTTC
32744013 ATTCC
128 ATTCC
32744018 CCAGTCTAAG
Statistics
Matches: 355, Mismatches: 81, Indels: 27
0.77 0.17 0.06
Matches are distributed among these distances:
156 1 0.00
157 7 0.02
158 144 0.41
159 196 0.55
160 7 0.02
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.24
Consensus pattern (158 bp):
GTTGTGGCAGCAGGATCGACAGCACGCAGGGGGAACCGGGTCGATCCCCGGCTTGCGCATTCTGC
CTCTCTGACCGGCTAAGCGCCCGCACGCCTATTTCATGGGTTGGCTTGGGCATAGGGAGTTCATT
CCATGTCTAAGCCCTAGCTGGACCGAGG
Found at i:32743947 original size:317 final size:316
Alignment explanation
Indices: 32743366--32744516 Score: 1108
Period size: 317 Copynumber: 3.5 Consensus size: 316
32743356 CCCAGTCTAA
* * * * *** *
32743366 GCATACGGAGTTCAATTCC-AGTCTAAGATCGGATCAGACCAAGTGTTGTAGCAGCAGGATCGAC
1 GCATACGGAGTTC-ATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGCAGGATCGAC
* ** * * * * * *
32743430 AGCACGTAGGGGCAACCGGG-TCGATTCTCGGCTTGTGCATTCTGCCTCTCCGACCGGCTAAGTG
65 AGCACGCAGGGGGGACCGGGCT-GATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCG
32743494 CCCGCACGCCCATTTCATGGGTTGGCTTGGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCT
129 CCCGCACGCCCATTTCATGGGTTGGCTTGGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCT
* * * ** * *
32743559 GAACCAAGGGTTGTGGCAGTGGGATCGGCAGCACGTAGAGGGTGATCGGGTTGATCCCCGGCTTG
194 GGACCAAGGGTTGTGGCAGCGGGACCGGCAGCACGTAGAGGG-GATCGGGCCGATCCCTGGCTTA
* * * *
32743624 CGCATTATGCCTCTCTGGCCGGCTTAGCGCCCGCACGCTCGTTTTGTGGGTTAACTTAG
258 CGCATTATGCCTCTCCGGCCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * *
32743683 TCATACGGAGTTCATTCCTATTCTAAGATCAGACCAGACCGAGGGTT-CTGGTAGCATGATCGAC
1 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTAC-GGTAGCAGGATCGAC
* * *
32743747 AGCACGCAGGGGGGACCGGG-TCGATCCCCGACTTGCGCATTCTACCTCTCTGATCGGCTGAGCG
65 AGCACGCAGGGGGGACCGGGCT-GATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCG
* *
32743811 CCTGCACGCCTATTTCATGGGTTGGCTTGGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCT
129 CCCGCACGCCCATTTCATGGGTTGGCTTGGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCT
** ** * * * *
32743876 GGACTGAGGGTTGTGGCAGCGGGACCGATAGCACGCAAAGGGGAACCGGGCCGATCCCTGGCTAA
194 GGACCAAGGGTTGTGGCAGCGGGACCGGCAGCACGTAGAGGGG-ATCGGGCCGATCCCTGGCTTA
* * ** * *
32743941 CGCATTACGCCTCTCCGGCCGGCTCAGTGCTGGTACGCTCGTTTCATGGGTTGACTTAG
258 CGCATTATGCCTCTCCGGCCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* *
32744000 GCATATGGAGTTCATTCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAAACCAGA
1 GCATACGGAGTTCATT-CCTAGTCTAAG-AT-C--AG---A----C---C--AG-----ACC-GA
* ** * * * * *
32744065 TCGAGTGTTGCGGTAGCAGGATCGGTAGCACACAGGGGAGACCGGGCTGATCCTCGGCTTACGCA
43 --G-G-GTTACGGTAGCAGGATCGACAGCACGCAGGGGGGACCGGGCTGATCCCCGACTTGCGCA
* * * * *
32744130 TTCTGCCTCTCTGACCGGCTGAGTGCACACACGCCCGTTTCATGGGTTGGCTTGGGCATAGGGAG
104 TTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCCCATTTCATGGGTTGGCTTGGGCATAGGGAG
* * * * *
32744195 TTCATTCCATGTCTAAGCCCCAGCCGGACCAAGGGCTGTGGTAGCAGGACCGGCAGCACGTAGAG
169 TTCATTCCATGTCTAAGCCCTAGCTGGACCAAGGGTTGTGGCAGCGGGACCGGCAGCACGTAGA-
* * * *
32744260 GGGGATCGGGCCAATCCCCT-GCTTACGCATTATGCCTCTCCGACCGGCTCAACGCCCACACGCT
233 GGGGATCGGGCCGAT-CCCTGGCTTACGCATTATGCCTCTCCGGCCGGCTCAGCGCCCGCACGCT
32744324 CGTTTCGTGGGTTGACTTAG
297 CGTTTCGTGGGTTGACTTAG
* * * * *
32744344 GCATACAGAGTTCATTCCTAGTCTAAGATCGGATCAGACCGAGGGTTACGATAGCAGGATCGACG
1 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGCAGGATCGACA
* * ** **
32744409 GCATGCAGGGGGGATCGGGCTGATCCCC-AGCTTGATCATTCTGCCTCTCCGGTCGGCTGAGCGC
66 GCACGCAGGGGGGACCGGGCTGATCCCCGA-CTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGC
* *** * * *
32744473 CCGTACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT
130 CCGCACGCCCATTTCATGGGTTGGCTTGGGCATAGGGAGTTCAT
32744517 CCCCAGTCTA
Statistics
Matches: 676, Mismatches: 123, Indels: 70
0.78 0.14 0.08
Matches are distributed among these distances:
316 6 0.01
317 375 0.55
318 10 0.01
319 3 0.00
320 1 0.00
321 2 0.00
322 5 0.01
325 1 0.00
327 2 0.00
329 2 0.00
332 1 0.00
334 2 0.00
336 1 0.00
339 4 0.01
340 2 0.00
341 1 0.00
342 3 0.00
343 11 0.02
344 234 0.35
345 10 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (316 bp):
GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGCAGGATCGACA
GCACGCAGGGGGGACCGGGCTGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCC
CGCACGCCCATTTCATGGGTTGGCTTGGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCTGG
ACCAAGGGTTGTGGCAGCGGGACCGGCAGCACGTAGAGGGGATCGGGCCGATCCCTGGCTTACGC
ATTATGCCTCTCCGGCCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
Found at i:32744291 original size:661 final size:661
Alignment explanation
Indices: 32743070--32744516 Score: 1812
Period size: 661 Copynumber: 2.2 Consensus size: 661
32743060 TTGAGTGTTG
* * * * ** * *
32743070 CGATAGCAGGATCGATAGCTCGTAGGGGAGACCGGGTCGATCCTTGGCTTGCACATTCTACCTTT
1 CGATAGCAGGATCGACAGCACGCAGGGGGGACCGGGTCGATCCCCGACTTGCACATTCTACCTCT
* * * * * * * *
32743135 CTGGCCGGTTGAGTGCCCACACGCCCGTTTCGTGCGTTGGCTTGGGCATAGGGGGTTCATTCCAT
66 CTGGTCGGCTGAGCGCCCGCACGCCTGTTTCATGGGTTGGCTTGGGCATAGGGAGTTCATTCCAT
* * * * **
32743200 GTCTAAGCCCCAGCCAGATCGAGGGTTGTGGCAACGGGATCGACAGCATGCAGAGGGGGATTGGG
131 GTCTAAGCCCCAGCCAGATCGAGGGTTGTGGCAACGGGACCGACAGCACGCAAAGGGGAACCGGG
* * * * * **
32743265 TCGATCCCCGGCTAGCGCATTATGCCTCTCCGGTAAGCTCAGTGCCCCCATGCTCGTTTTGTGGG
196 CCGATCCCCGGCTAACGCATTACGCCTCTCCGGCAAGCTCAGTGCCCCCACGCTCGTTTCATGGG
*
32743330 TTGACTTAGGCATACGAAGTTCATTCCCCAGTCTAAGCATACGGAGTTCAATTCCAGTCTAAGAT
261 TTGACTTAGGCATACGAAGTTCATTCCCCAGTCTAAGCATACAGAGTTCAATTCCAGTCTAAGAT
** * * ** *
32743395 CGGATCAGACCAAGTGTTGTAGCAGCAGGATCGACAGCACGTAGGGGCAACCGGGTCGATTCTCG
326 CAAACCAGACCAAGTGTTGCAGCAGCAGGATCGACAGCACACAGGGGCAACCGGGTCGATCCTCG
** * *
32743460 GCTTGTGCATTCTGCCTCTCCGACCGGCTAAGTGCCCGCACGCCCATTTCATGGGTTGGCTTGGG
391 GCTTACGCATTCTGCCTCTCCGACCGGCTAAGTGCACACACGCCCATTTCATGGGTTGGCTTGGG
* * * ** *
32743525 CATAGGGAGTTCATTCCATGTCTAAGCCCTAGCTGAACCAAGGGTTGTGGCAGTGGGATCGGCAG
456 CATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCAAGGGCTGTGGCAGCAGGACCGGCAG
* *** * * * * *
32743590 CACGTAGAGGGTGATCGGGTTGATCCCCGGCTTGCGCATTATGCCTCTCTGGCCGGCTTAGCGCC
521 CACGTAGAGGGGGATCGGGCCAATCCCCGGCTTACGCATTATGCCTCTCCGACCGGCTCAACGCC
* * * * *
32743655 CGCACGCTCGTTTTGTGGGTTAACTTAGTCATACGGAGTTCATTCCTATTCTAAGATCAGACCAG
586 CACACGCTCGTTTCGTGGGTTAACTTAGGCATACAGAGTTCATTCCTAGTCTAAGATCAGACCAG
32743720 ACCGAGGGTT-
651 ACCGAGGGTTA
* * *
32743730 CTGGTAGCATGATCGACAGCACGCAGGGGGGACCGGGTCGATCCCCGACTTGCGCATTCTACCTC
1 C-GATAGCAGGATCGACAGCACGCAGGGGGGACCGGGTCGATCCCCGACTTGCACATTCTACCTC
* * *
32743795 TCTGATCGGCTGAGCGCCTGCACGCCTATTTCATGGGTTGGCTTGGGCATAGGGAGTTCATTCCA
65 TCTGGTCGGCTGAGCGCCCGCACGCCTGTTTCATGGGTTGGCTTGGGCATAGGGAGTTCATTCCA
* ** * *
32743860 TGTCTAAGCCCTAGCTGGA-CTGAGGGTTGTGGCAGCGGGACCGATAGCACGCAAAGGGGAACCG
130 TGTCTAAGCCCCAGCCAGATC-GAGGGTTGTGGCAACGGGACCGACAGCACGCAAAGGGGAACCG
* ** ****
32743924 GGCCGATCCCTGGCTAACGCATTACGCCTCTCCGGCCGGCTCAGTGCTGGTACGCTCGTTTCATG
194 GGCCGATCCCCGGCTAACGCATTACGCCTCTCCGGCAAGCTCAGTGCCCCCACGCTCGTTTCATG
* *
32743989 GGTTGACTTAGGCATATGGAGTTCATTCCCCAGTCTAAGCATACAGAGTTC-ATTCCCAGTCTAA
259 GGTTGACTTAGGCATACGAAGTTCATTCCCCAGTCTAAGCATACAGAGTTCAATT-CCAGTCTAA
* * * * **
32744053 GATCAAACCAGATCGAGTGTTGCGGTAGCAGGATCGGTAGCACACAGGGG-AGACCGGG-CTGAT
323 GATCAAACCAGACCAAGTGTTGCAGCAGCAGGATCGACAGCACACAGGGGCA-ACCGGGTC-GAT
* * *
32744116 CCTCGGCTTACGCATTCTGCCTCTCTGACCGGCTGAGTGCACACACGCCCGTTTCATGGGTTGGC
386 CCTCGGCTTACGCATTCTGCCTCTCCGACCGGCTAAGTGCACACACGCCCATTTCATGGGTTGGC
* *
32744181 TTGGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCAAGGGCTGTGGTAGCAGGACC
451 TTGGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCAAGGGCTGTGGCAGCAGGACC
*
32744246 GGCAGCACGTAGAGGGGGATCGGGCCAATCCCCTGCTTACGCATTATGCCTCTCCGACCGGCTCA
516 GGCAGCACGTAGAGGGGGATCGGGCCAATCCCCGGCTTACGCATTATGCCTCTCCGACCGGCTCA
* *
32744311 ACGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCTAGTCTAAGATCGG
581 ACGCCCACACGCTCGTTTCGTGGGTTAACTTAGGCATACAGAGTTCATTCCTAGTCTAAGATCAG
*
32744376 ATCAGACCGAGGGTTA
646 ACCAGACCGAGGGTTA
* * * *
32744392 CGATAGCAGGATCGACGGCATGCAGGGGGGATCGGG-CTGATCCCC-AGCTTG-ATCATTCTGCC
1 CGATAGCAGGATCGACAGCACGCAGGGGGGACCGGGTC-GATCCCCGA-CTTGCA-CATTCTACC
* * * * * *
32744454 TCTCCGGTCGGCTGAGCGCCCGTACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT
63 TCTCTGGTCGGCTGAGCGCCCGCACGCCTGTTTCATGGGTTGGCTTGGGCATAGGGAGTTCAT
32744517 CCCCAGTCTA
Statistics
Matches: 666, Mismatches: 112, Indels: 17
0.84 0.14 0.02
Matches are distributed among these distances:
660 9 0.01
661 656 0.98
662 1 0.00
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (661 bp):
CGATAGCAGGATCGACAGCACGCAGGGGGGACCGGGTCGATCCCCGACTTGCACATTCTACCTCT
CTGGTCGGCTGAGCGCCCGCACGCCTGTTTCATGGGTTGGCTTGGGCATAGGGAGTTCATTCCAT
GTCTAAGCCCCAGCCAGATCGAGGGTTGTGGCAACGGGACCGACAGCACGCAAAGGGGAACCGGG
CCGATCCCCGGCTAACGCATTACGCCTCTCCGGCAAGCTCAGTGCCCCCACGCTCGTTTCATGGG
TTGACTTAGGCATACGAAGTTCATTCCCCAGTCTAAGCATACAGAGTTCAATTCCAGTCTAAGAT
CAAACCAGACCAAGTGTTGCAGCAGCAGGATCGACAGCACACAGGGGCAACCGGGTCGATCCTCG
GCTTACGCATTCTGCCTCTCCGACCGGCTAAGTGCACACACGCCCATTTCATGGGTTGGCTTGGG
CATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCAAGGGCTGTGGCAGCAGGACCGGCAG
CACGTAGAGGGGGATCGGGCCAATCCCCGGCTTACGCATTATGCCTCTCCGACCGGCTCAACGCC
CACACGCTCGTTTCGTGGGTTAACTTAGGCATACAGAGTTCATTCCTAGTCTAAGATCAGACCAG
ACCGAGGGTTA
Found at i:32744325 original size:344 final size:343
Alignment explanation
Indices: 32743684--32744370 Score: 878
Period size: 344 Copynumber: 2.0 Consensus size: 343
32743674 TTAACTTAGT
* * * * *
32743684 CATACGGAGTTCATTCCTATTCTAAGATCAGACCAGACCGAGGGTTCTGGTAGCATGATCGACAG
1 CATACAGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTCTGGTAGCAGGATCGACAG
* * * *
32743749 CACGCAGGGGGGACCGGGTCGATCCCCGACTTGCGCATTCTACCTCTCTGATCGGCTGAGCGCCT
66 CACACAGGGGAGACCGGGTCGATCCCCGACTTACGCATTCTACCTCTCTGACCGGCTGAGCGCCT
* * * *
32743814 GCACGCCTATTTCATGGGTTGGCTTGGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCTGGA
131 ACACGCCCATTTCATGGGTTGGCTTGGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGA
** * * * *
32743879 CTGAGGGTTGTGGCAGCGGGACCGATAGCACGCAAAGGGGAACCGGGCCGATCCCTGGCTAACGC
196 CCAAGGGCTGTGGCAGCAGGACCGACAGCACGCAAAGGGGAACCGGGCCAATCCCTGGCTAACGC
* ** **** **
32743944 ATTACGCCTCTCCGGCCGGCTCAGTGCTGGTACGCTCGTTTCATGGGTTGACTTAGGCATATGGA
261 ATTACGCCTCTCCGACCGGCTCAACGCCCACACGCTCGTTTCATGGGTTGACTTAGGCATACAGA
32744009 GTTCATTCCCCAGTCTAAG
326 GTTCATT-CCCAGTCTAAG
* * **
32744028 CATACAGAGTTCATTCCCAGTCTAAGATCAAACCAGATCGAGTGTTGC-GGTAGCAGGATCGGTA
1 CATACAGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTT-CTGGTAGCAGGATCGACA
* * * *
32744092 GCACACAGGGGAGACCGGG-CTGATCCTCGGCTTACGCATTCTGCCTCTCTGACCGGCTGAGTGC
65 GCACACAGGGGAGACCGGGTC-GATCCCCGACTTACGCATTCTACCTCTCTGACCGGCTGAGCGC
*
32744156 AC-ACACGCCCGTTTCATGGGTTGGCTTGGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCC
129 -CTACACGCCCATTTCATGGGTTGGCTTGGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCC
* * * * * * *
32744220 GGACCAAGGGCTGTGGTAGCAGGACCGGCAGCACGTAGAGGGGGATCGGGCCAATCCCCT-GCTT
193 GGACCAAGGGCTGTGGCAGCAGGACCGACAGCACGCAAAGGGGAACCGGGCCAAT-CCCTGGCTA
* *
32744284 ACGCATTATGCCTCTCCGACCGGCTCAACGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATA
257 ACGCATTACGCCTCTCCGACCGGCTCAACGCCCACACGCTCGTTTCATGGGTTGACTTAGGCATA
*
32744349 CAGAGTTCATTCCTAGTCTAAG
322 CAGAGTTCATTCCCAGTCTAAG
32744371 ATCGGATCAG
Statistics
Matches: 292, Mismatches: 47, Indels: 9
0.84 0.14 0.03
Matches are distributed among these distances:
343 11 0.04
344 275 0.94
345 6 0.02
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (343 bp):
CATACAGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTCTGGTAGCAGGATCGACAG
CACACAGGGGAGACCGGGTCGATCCCCGACTTACGCATTCTACCTCTCTGACCGGCTGAGCGCCT
ACACGCCCATTTCATGGGTTGGCTTGGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGA
CCAAGGGCTGTGGCAGCAGGACCGACAGCACGCAAAGGGGAACCGGGCCAATCCCTGGCTAACGC
ATTACGCCTCTCCGACCGGCTCAACGCCCACACGCTCGTTTCATGGGTTGACTTAGGCATACAGA
GTTCATTCCCAGTCTAAG
Found at i:32744399 original size:159 final size:158
Alignment explanation
Indices: 32744027--32744526 Score: 495
Period size: 158 Copynumber: 3.2 Consensus size: 158
32744017 CCCAGTCTAA
* * *
32744027 GCATACAGAGTTCATTCCCAGTCTAAGATCAAACCAGATCGAGTGTTGCGGTAGCAGGATCGGTA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGCGGTAGCAGGATCGGCA
* * * * * *
32744092 GCAC-ACAGGGGAGACCGGGCTGATCCTCGGCTTACGCATTCTGCCTCTCTGACCGGCTGAGTGC
66 GCACGAGAGGGG-GATCGGGCTGATCCCCAGCTTACGCATTCTGCCTCTCCGACCGGCTGAGCGC
* * * *
32744156 ACACACGCCCGTTTCATGGGTTGGCTTGG
130 CCACACGCTCGTTTCATGGGTTGACTTAG
** ** * * * * * * *
32744185 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAGCCGGACCAAGGGCTGTGGTAGCAGGACCGGC
1 GCATACAGAGTTCATTCCCA-GTCTAAGATCAAACCAGACCGAGGGTTGCGGTAGCAGGATCGGC
** * * * *
32744249 AGCACGTAGAGGGGGATCGGGCCAATCCCCTGCTTACGCATTATGCCTCTCCGACCGGCTCAACG
65 AGCACG-AGAGGGGGATCGGGCTGATCCCCAGCTTACGCATTCTGCCTCTCCGACCGGCTGAGCG
*
32744314 CCCACACGCTCGTTTCGTGGGTTGACTTAG
129 CCCACACGCTCGTTTCATGGGTTGACTTAG
* ** * * * * *
32744344 GCATACAGAGTTCATTCCTAGTCTAAGATCGGATCAGACCGAGGGTTACGATAGCAGGATCGACG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGCGGTAGCAGGATCGGCA
* * **
32744409 GCATGCAG-GGGGGATCGGGCTGATCCCCAGCTTGA-TCATTCTGCCTCTCCGGTCGGCTGAGCG
66 GCACG-AGAGGGGGATCGGGCTGATCCCCAGCTT-ACGCATTCTGCCTCTCCGACCGGCTGAGCG
** *
32744472 CCCGTACGCTTGTTTCATGGGTTGACTTAG
129 CCCACACGCTCGTTTCATGGGTTGACTTAG
* *
32744502 GCATACGGAGTTCATCCCCAGTCTA
1 GCATACAGAGTTCATTCCCAGTCTA
32744527 GGCATATGGA
Statistics
Matches: 271, Mismatches: 66, Indels: 10
0.78 0.19 0.03
Matches are distributed among these distances:
157 3 0.01
158 143 0.53
159 117 0.43
160 8 0.03
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (158 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGCGGTAGCAGGATCGGCA
GCACGAGAGGGGGATCGGGCTGATCCCCAGCTTACGCATTCTGCCTCTCCGACCGGCTGAGCGCC
CACACGCTCGTTTCATGGGTTGACTTAG
Found at i:32744529 original size:26 final size:26
Alignment explanation
Indices: 32744499--32744552 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
32744489 TGGGTTGACT
32744499 TAGGCATACGGAGTTCATCCCCAGTC
1 TAGGCATACGGAGTTCATCCCCAGTC
* *
32744525 TAGGCATATGGAGTTCATTCCCAGTC
1 TAGGCATACGGAGTTCATCCCCAGTC
32744551 TA
1 TA
32744553 AGATCAGACC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (26 bp):
TAGGCATACGGAGTTCATCCCCAGTC
Found at i:32745998 original size:368 final size:364
Alignment explanation
Indices: 32745028--32746336 Score: 1290
Period size: 368 Copynumber: 3.6 Consensus size: 364
32745018 GTTGACTTAG
* ** ** **
32745028 GCATAC-AGAGTTCATTCCCAGTCTATGATCAGACC-GAACTAAGGGTTATGGTAGCAGGATCGA
1 GCATACGA-AGTTCATTCCCAGTCTAAGATTGGACCAG-ACCGAGGGTTGCGGTAGCAGGATCGA
* * * * * * * * *
32745091 TAGCACGTAAGGGGGATAGGGCTGATCCCTGGCTTGCT-CATTCTGCCTCTCAGGTCGGTTGAGC
64 TAGCACGCAGGGGGGATCGGTCCGATCCCTGACTTG-TGCATTCTACCTCTCTGGCCGGTTGAGC
* * * * * * *
32745155 GCTCGCATGCTTGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATATCTAAGCCCCAGT
128 GCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAACCCCAGC
** * * *
32745220 CAGACCGAATGTTGTGGCAGCAAGACCGATAG-GGGATGGGCAGCACGCAGAGGGGGACCGGGCT
193 CAGACCGAGGGTTGTGGCAGCAGGACCGATAGCGAGATCGGCAGCACGCAGAGGGGGACCGGGCT
* * * ** *
32745284 GATCCCCGACTTACGCATTA------T----GCCTATCCGACCGACTGAGCGCCCACATGCTTCT
258 GATCCCTGACTTATGCATTATGCCTCTCGCGGCCTATCCGATCGACTGAGCGCCCGTACGC-TCT
*
32745339 TTCGTGGGTTGACTTAGGCATATAGAGTTCATCCCCAGTCGAA
322 TTCGTGGGTTGACTTAGGCATATAGAGTTCATCCCCAGTCTAA
* * * * * * *
32745382 GCATATGATGTTCATTCCCAGTCTAAGATCGGATC-GAACCGAGGGTTGCCGTAGCAGGATTGGT
1 GCATACGAAGTTCATTCCCAGTCTAAGATTGGACCAG-ACCGAGGGTTGCGGTAGCAGGATCGAT
* *
32745446 AGCATGCA-GGGGGATCGAG-CCGATCCCTGACTTGTGCATTCTACCTCTCTGGCCGGTTGAGTG
65 AGCACGCAGGGGGGATCG-GTCCGATCCCTGACTTGTGCATTCTACCTCTCTGGCCGGTTGAGCG
* * * * * * *
32745509 CCTGTACGCTCGTTTCATGGGTTAGCTTAGGCATACAGAGTTCATTCCATGTCTGAGCCCTAGCC
129 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAACCCCAGCC
* * * * *
32745574 AGACTGAGGGCTATGGCAGCAGGACCGATAGCGAGATCGACAGCACGCAGAGGGGGACCGGGTTG
194 AGACCGAGGGTTGTGGCAGCAGGACCGATAGCGAGATCGGCAGCACGCAGAGGGGGACCGGGCTG
* * *
32745639 ATCCTTGACTTTTGCATTATGCCTCTCCGGCCGGCCTTTCCGATCGACTGAGCGCCCGTACGCTC
259 ATCCCTGACTTATGCATTATGCCTCT-C-G-CGGCCTATCCGATCGACTGAGCGCCCGTACGCTC
32745704 ATTTCGTGGGTTGACTTAGGCATATAGAGTTCATCCCCAGTCTAA
321 -TTTCGTGGGTTGACTTAGGCATATAGAGTTCATCCCCAGTCTAA
* * * ** * * *
32745749 GCCTACGAAGTTGATTCCCAATCTAAGATTGGACCAGATTGAGGGTTGTGGCAGCAGGATCGACA
1 GCATACGAAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGTAGCAGGATCGATA
* * * * * * * *
32745814 ACACGTAGGGGGGA-CTGGTCCGATCCCTGGCTTATGTATTCTACCTCTCTGGTCGATTGAGCCC
66 GCACGCAGGGGGGATC-GGTCCGATCCCTGACTTGTGCATTCTACCTCTCTGGCCGGTTGAGCGC
* * * * * *
32745878 CCGCACGCTCATTACGTGGGTTGGCTTAGGCATACGGAGTTCATTACATGTCTAAACCTCAGTCA
130 CCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAACCCCAGCCA
* * * * * *
32745943 GACCGAGGGTTGTGGCAGCAGGACCGGTAGCGAGATTGGTAGCATGTAGAGGGGGATCGGGCTGA
195 GACCGAGGGTTGTGGCAGCAGGACCGATAGCGAGATCGGCAGCACGCAGAGGGGGACCGGGCTGA
* * * * * * *
32746008 TCCCT-AGCTTGTGCATTATGCCTCTTCGATCGCCCTCTCTGATCGACTGTGCACCTGTACGCTC
260 TCCCTGA-CTTATGCATTATGCCTC-TCG--CGGCCTATCCGATCGACTGAGCGCCCGTACGCTC
* **
32746072 GTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAA
321 -TTTCGTGGGTTGACTTAGGCATATAGAGTTCATCCCCAGTCTAA
* * *
32746117 GCATAC-AGAGTTCATTCCCAGTCTAAGATTGGACTACACCGAGGGTTGCGATAGCAGGATCGAT
1 GCATACGA-AGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGTAGCAGGATCGAT
* * * ** * * *
32746181 AGCACGCAGAGGGGATCGTTTCGATCCCCAACTTGTGCATTCTACCTCTCCGGCCGGCTGAGCAC
65 AGCACGCAGGGGGGATCGGTCCGATCCCTGACTTGTGCATTCTACCTCTCTGGCCGGTTGAGCGC
* ** * *
32746246 CCGCACGCTTGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAACCCCAGCCG
130 CCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAACCCCAGCCA
* *
32746311 GACCAAGGGTTGTGGCAGCGGGACCG
195 GACCGAGGGTTGTGGCAGCAGGACCG
32746337 GCAGCACGTA
Statistics
Matches: 776, Mismatches: 152, Indels: 40
0.80 0.16 0.04
Matches are distributed among these distances:
352 1 0.00
353 122 0.16
354 101 0.13
355 1 0.00
360 1 0.00
366 2 0.00
367 125 0.16
368 421 0.54
369 2 0.00
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.25
Consensus pattern (364 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGTAGCAGGATCGATA
GCACGCAGGGGGGATCGGTCCGATCCCTGACTTGTGCATTCTACCTCTCTGGCCGGTTGAGCGCC
CGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAACCCCAGCCAG
ACCGAGGGTTGTGGCAGCAGGACCGATAGCGAGATCGGCAGCACGCAGAGGGGGACCGGGCTGAT
CCCTGACTTATGCATTATGCCTCTCGCGGCCTATCCGATCGACTGAGCGCCCGTACGCTCTTTCG
TGGGTTGACTTAGGCATATAGAGTTCATCCCCAGTCTAA
Found at i:32746121 original size:26 final size:26
Alignment explanation
Indices: 32746091--32746143 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
32746081 GTTGACTTAG
*
32746091 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
32746117 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
32746143 G
1 G
32746144 ATTGGACTAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:32746622 original size:141 final size:141
Alignment explanation
Indices: 32746363--32746642 Score: 321
Period size: 141 Copynumber: 2.0 Consensus size: 141
32746353 GACCGAGCTA
* * * *
32746363 ATCCCCGGCTTGCGCATTATGCCTCTTTGGCCGGCTCAACGCCCCCACACTTGTTTCATGAGTTG
1 ATCCCCGGCTTGCACATCATGCCTCTTCGGCCGGCTCAACGCCCCCACACTTATTTCATGAGTTG
* * * * *
32746428 ACTTATGCATACGTAGTTCATTCCCAGTCTAGGATCGAACCAGACCGAGGGTTGCGGTAGCAGGA
66 ACTTATGCATACGTACTTCATTCCCAGTCTAAGATCGAACCAGACCGAAGGTTGCAGCAGCAGGA
32746493 TTGATAGCAGG
131 TTGATAGCAGG
* * ** * * *
32746504 ATCCCCGGCTTGCACATCATGCCTCTTCGGTCGGCTCAGCGCCCGTAC-GTTCATTTCGTGGGTT
1 ATCCCCGGCTTGCACATCATGCCTCTTCGGCCGGCTCAACGCCCCCACACTT-ATTTCATGAGTT
* * * * * * *
32746568 GACTTATGCATAC-TGACTTCATTCCTATTGTAAGATTGGACCAGACTGAAGGTTGTAGCAGCAG
65 GACTTATGCATACGT-ACTTCATTCCCAGTCTAAGATCGAACCAGACCGAAGGTTGCAGCAGCAG
32746632 GATTGATAGCA
129 GATTGATAGCA
32746643 CACAGGGGGG
Statistics
Matches: 114, Mismatches: 23, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
140 3 0.03
141 111 0.97
ACGTcount: A:0.21, C:0.26, G:0.25, T:0.28
Consensus pattern (141 bp):
ATCCCCGGCTTGCACATCATGCCTCTTCGGCCGGCTCAACGCCCCCACACTTATTTCATGAGTTG
ACTTATGCATACGTACTTCATTCCCAGTCTAAGATCGAACCAGACCGAAGGTTGCAGCAGCAGGA
TTGATAGCAGG
Found at i:32746772 original size:26 final size:26
Alignment explanation
Indices: 32746734--32746785 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
32746724 TTGGCTTAGA
*
32746734 CATACGGAGTTCATT-CCATGTCTAAG
1 CATACGGAATTCATTCCCA-GTCTAAG
*
32746760 CATATGGAATTCATTCCCAGTCTAAG
1 CATACGGAATTCATTCCCAGTCTAAG
32746786 ATTTTGAGCC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (26 bp):
CATACGGAATTCATTCCCAGTCTAAG
Found at i:32747788 original size:159 final size:155
Alignment explanation
Indices: 32747540--32748135 Score: 518
Period size: 159 Copynumber: 3.9 Consensus size: 155
32747530 GCAATAGGAT
* * * * * * *
32747540 CGACAGCATGCA-AGGGGGACCGGGTCGATCCCCAGCTTACGCATTCTACCTCTCCAGCC-AGCT
1 CGACAGCACGCAGAAGGGGACTGGGCCGATCCCCAACTTACGCATTATACCTCTCCGGCCGA-CT
* * * * * *
32747603 GAGCGCCTGCACGCCCATTTCATGGGTTAGCTTAGGCATAGGGTGTTCATTCCATGTCTAAGCCC
65 CAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCC
*
32747668 TAGCCGAACCGAGGGTTGTGGTATAAGGA
130 CAGCCGAACCGAGGGTTGTGGT-T--GGA
* * * *
32747697 TCGACAGCACACAGAAGGGGATTAGGCCGATCCCCAACTTATGCATTATACCTCTCCGGCCTG-C
1 -CGACAGCACGCAGAAGGGGACTGGGCCGATCCCCAACTTACGCATTATACCTCTCCGGCC-GAC
* * * ** *
32747761 TCATCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGAATACAGAATTCATTCCATGTCTAAGCC
64 TCAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCC
** *
32747826 CCAGTTGGACCGA-GG-T-T-G-T-G-
129 CCAGCCGAACCGAGGGTTGTGGTTGGA
* ** * * * * * *
32747846 -G-CAGCACGCAG-AGGGGACTGGGCTGATCCCCGGCTTGCGTATTTTGCCTCTCCGGTCGACTG
1 CGACAGCACGCAGAAGGGGACTGGGCCGATCCCCAACTTACGCATTATACCTCTCCGGCCGACTC
* *
32747908 AGCGCCCGCACGCTCGTTTCGTGAGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCC
66 AGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCC
* *
32747973 AGCC-AGACTGAGGGTTGTGGTGGCGGGA
131 AGCCGA-ACCGAGGGTTGTGGT---TGGA
* * * * ** *
32748001 CCGACAGCACGTAGAGGGGGACCGGGCCGATCCCCGACTTGTGCATTATGCCTCTCCGGCCGACT
1 -CGACAGCACGCAGAAGGGGACTGGGCCGATCCCCAACTTACGCATTATACCTCTCCGGCCGACT
* * * * *
32748066 CAGTGCCCACATGCTCGTTTCATGGGTTGGCTTAGGCATACGGATTTCATTCCATGTCTAAGCCC
65 CAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCC
*
32748131 TAGCC
130 CAGCC
32748136 TGATCGAGGG
Statistics
Matches: 350, Mismatches: 69, Indels: 37
0.77 0.15 0.08
Matches are distributed among these distances:
144 1 0.00
145 102 0.29
146 11 0.03
147 2 0.01
148 1 0.00
149 1 0.00
150 1 0.00
153 1 0.00
154 1 0.00
155 1 0.00
156 1 0.00
157 2 0.01
158 21 0.06
159 204 0.58
ACGTcount: A:0.19, C:0.29, G:0.29, T:0.23
Consensus pattern (155 bp):
CGACAGCACGCAGAAGGGGACTGGGCCGATCCCCAACTTACGCATTATACCTCTCCGGCCGACTC
AGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCC
AGCCGAACCGAGGGTTGTGGTTGGA
Found at i:32748147 original size:159 final size:165
Alignment explanation
Indices: 32747847--32748285 Score: 500
Period size: 159 Copynumber: 2.7 Consensus size: 165
32747837 GAGGTTGTGG
* * * *
32747847 CAGCACGCAGA-GGGGACTGGGCTGATCCCCGGCTTGCGTATTTTGCCTCTCCGGTCGACTGAGC
1 CAGCACGCAGAGGGGGACTGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCCGACTGAGC
* * * * *
32747911 GCCCGCACGCTCGTTTCGTGAGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGC
66 GCCCACACGCTCGTTTCATGGGTTGGCTTAGGCATACGGATTTCATTCCATGTCTAAGCCCCAGC
*
32747976 CAGACTGAGGG-T-T-G-TGG-TGGC-GGGACCGA
131 CAGACTGAGGGTTATGGAAGGATGGCAGGGACCGA
* * * * * *
32748005 CAGCACGTAGAGGGGGACCGGGCCGATCCCCGACTTGTGCATTATGCCTCTCCGGCCGACTCAGT
1 CAGCACGCAGAGGGGGACTGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCCGACTGAGC
* *
32748070 GCCCACATGCTCGTTTCATGGGTTGGCTTAGGCATACGGATTTCATTCCATGTCTAAGCCCTAGC
66 GCCCACACGCTCGTTTCATGGGTTGGCTTAGGCATACGGATTTCATTCCATGTCTAAGCCCCAGC
* * *
32748135 CTGA-TCGAGGGTTATGGCAACAGGACTGGCAATGGGATCGC
131 CAGACT-GAGGGTTATGG--A-AGGA-TGGC-A-GGGACCGA
* * *
32748176 CAGCACGCAGAGGTGGACTGGG-CTATCCTCGGCTTGCGCATTATGCCTCTCCGGCCGACTGAGC
1 CAGCACGCAGAGGGGGACTGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCCGACTGAGC
* * * *
32748240 GCCCTCACGCTCATTTCATGGGTTGACTTAGGCAAACGGATTTCAT
66 GCCCACACGCTCGTTTCATGGGTTGGCTTAGGCATACGGATTTCAT
32748286 CCCCAATATA
Statistics
Matches: 232, Mismatches: 35, Indels: 16
0.82 0.12 0.06
Matches are distributed among these distances:
158 11 0.05
159 110 0.47
160 1 0.00
161 1 0.00
162 1 0.00
166 2 0.01
168 4 0.02
170 77 0.33
171 25 0.11
ACGTcount: A:0.18, C:0.28, G:0.30, T:0.23
Consensus pattern (165 bp):
CAGCACGCAGAGGGGGACTGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCCGACTGAGC
GCCCACACGCTCGTTTCATGGGTTGGCTTAGGCATACGGATTTCATTCCATGTCTAAGCCCCAGC
CAGACTGAGGGTTATGGAAGGATGGCAGGGACCGA
Found at i:32755700 original size:26 final size:26
Alignment explanation
Indices: 32755650--32755702 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32755640 GTTGGCTTAG
*
32755650 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
32755676 GCATACGGAGTTCATTCC-TAATCTAA
1 GCATACGGAGTTCATTCCAT-ATCTAA
32755702 G
1 G
32755703 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:32755874 original size:26 final size:26
Alignment explanation
Indices: 32755845--32755897 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
32755835 GTTGGCTTAG
*
32755845 GCATACCGTGTTCATT-CCATGTCTAA
1 GCATACCGAGTTCATTCCCA-GTCTAA
*
32755871 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACCGAGTTCATTCCCAGTCTAA
32755897 G
1 G
32755898 ATTGGATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.26, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACCGAGTTCATTCCCAGTCTAA
Found at i:32755914 original size:195 final size:184
Alignment explanation
Indices: 32755582--32756438 Score: 724
Period size: 184 Copynumber: 4.7 Consensus size: 184
32755572 GCTCATGACA
* * * * *
32755582 CCCGGCTTGTGCATTCTGCCTCTCCGTCCGGCAGAGCGCCTGCACGCTCGTTTCGTGGGTTGGCT
1 CCCGGCTTGCGCATTCTGCCTCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCT
* *
32755647 TAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCTAATCTAAGATTGGACCG
66 TAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATTGGACCA
*
32755712 GACCGAGGGTTTGACAGTAGGACCAGCAGCAGGATCGACAGCACGTAGGGGGGACCAGGCCGATC
131 GACCGAGGG-TTG-C-----G---A-CAGCAGGATCGACAGCACGCAGGGGGGACCAGGCCGATC
* * * *
32755777 CCCGGCTTACGCATTCTGCCTCTCTGGCCGGTTGAGTGCCCGCATGCTCGTTTCGTGGGTTGGCT
1 CCCGGCTTGCGCATTCTGCCTCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCT
* * * *
32755842 TAGGCATACCGTGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCA
66 TAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATTGGACCA
* *
32755907 GACCGAGGGTTGCGACAGCAGGATCGACAGCACGCAGGGGGGATCGGGCCGATC
131 GACCGAGGGTTGCGACAGCAGGATCGACAGCACGCAGGGGGGACCAGGCCGATC
* * *
32755961 CCCAGCTTGCGCATTCTGCCTCT-TCGGCCAGCTGAGCCCCCGCACGCTCGTTTCGTGGGTTGGC
1 CCCGGCTTGCGCATTCTGCCTCTCT-GGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGC
* * ** * * * *
32756025 TTAGGCATA-GGAGTTCATTCCATGTCTAAGC---C-----CCAGT-CGGATCGAGGGTTGTG-G
65 TTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATTG-GAC
** * * * ** * * *
32756079 CAG--C-A-GG-ACCGACAACGGGATTGGTAGCACGCAGAAGGGGATCAGGCTGATC
129 CAGACCGAGGGTTGCGACAGCAGGATCGACAGCACGCAG-GGGGGACCAGGCCGATC
** * * * * * * *** * * * * *
32756131 TTCGACTTACGCATTATGCCTCTCCGCCCGGTTGAGCGCCTATATGCGCATTTAGTGGGTTGACT
1 CCCGGCTTGCGCATTCTGCCTCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCT
* * * * * * * ***
32756196 TAGGCATACGAAATTCATCCCCA-GTCTAAGCATACGAAGTTCATTCCTAGTCTAATATCAAACC
66 TAGGCATACGGAGTTCAT-TCCATGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATTGGACC
* * * * * * *
32756260 AGACTGAGGGTTGTGACAGCAGGATTGGCAGCATGTAGGGGGGACCGGGCCGATC
130 AGACCGAGGGTTGCGACAGCAGGATCGACAGCACGCAGGGGGGACCAGGCCGATC
* * ***
32756315 CTCGGCTTGCGCATTCTGCCTCTCCGGTTAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCT
1 CCCGGCTTGCGCATTCTGCCTCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCT
* * * *
32756380 TAGGGATACGGAGTTCATTCCATGTATAAGCATACAGAGTTCATTCCCAGTCTAAGATT
66 TAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATT
32756439 TTGAGCTATG
Statistics
Matches: 519, Mismatches: 121, Indels: 55
0.75 0.17 0.08
Matches are distributed among these distances:
169 20 0.04
170 69 0.13
171 16 0.03
172 4 0.01
174 12 0.02
175 4 0.01
179 3 0.01
180 9 0.02
183 25 0.05
184 208 0.40
185 20 0.04
188 1 0.00
193 1 0.00
194 3 0.01
195 124 0.24
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.25
Consensus pattern (184 bp):
CCCGGCTTGCGCATTCTGCCTCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCT
TAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATTGGACCA
GACCGAGGGTTGCGACAGCAGGATCGACAGCACGCAGGGGGGACCAGGCCGATC
Found at i:32756238 original size:26 final size:26
Alignment explanation
Indices: 32756199--32756250 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
32756189 GTTGACTTAG
32756199 GCATACGAAATTCATCCCCAGTCTAA
1 GCATACGAAATTCATCCCCAGTCTAA
* * *
32756225 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAATTCATCCCCAGTCTAA
32756251 TATCAAACCA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.33, C:0.27, G:0.13, T:0.27
Consensus pattern (26 bp):
GCATACGAAATTCATCCCCAGTCTAA
Found at i:32757490 original size:26 final size:26
Alignment explanation
Indices: 32757459--32757511 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
32757449 GTTGATTTAG
32757459 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
32757485 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
32757511 G
1 G
32757512 ATCAGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:32757679 original size:26 final size:26
Alignment explanation
Indices: 32757643--32757695 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
32757633 GTTGGCTTAG
32757643 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
32757669 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
32757695 G
1 G
32757696 ATCGAACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:32757776 original size:184 final size:184
Alignment explanation
Indices: 32757446--32757853 Score: 457
Period size: 184 Copynumber: 2.2 Consensus size: 184
32757436 GCTCATTTTA
** * *
32757446 TGGGTTGATTTAGGCATACGGAGTTCATCCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAA
1 TGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
* ** * * * *
32757511 GATCAGATCAGACCGAGGGTTGTGACAGCAGGATCGACAGCACGTAGGGGGGTCCGAGCCGATCC
66 GATCAGAACAGACCGAGACTTGCGACAGCAGGATCGACAGCACGTAAGAGGGACCGAGCCGATCC
* * * * ** *
32757576 TCGGCTTGTGCATTCTGCCTCTTCGG-CTAGCTGAGCGCCCGCA-CGCTTGTTTCG
131 TCGACTTGTACATTCTGCCTCTCCGGTC-AGCTGAGCGCCCACATAAC-CGTTTCG
* *
32757630 TGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCTAGTCTAA
1 TGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
32757695 GATC-GAACTGGATCGAGACTTGCGACAGTAGGATCGACAGCACGTAAGAGGGACCGGGCTGATC
66 GATCAGAAC-AGACCGAGACTTGCGACAGCAGGATCGACAGCACGTAAGAGGGACCGAGCCGATC
* * *
32757759 TTCGACTT-TCACATTCTGCCTCTCCGGTCGGCTGAGTGCCCACATAACCGTTTCG
130 CTCGACTTGT-ACATTCTGCCTCTCCGGTCAGCTGAGCGCCCACATAACCGTTTCG
* * *
32757814 TGGGTTGGCTTAGCCAGAGGGAGTTCATT-CCATGTCTAAG
1 TGGGTTGGCTTAGGCATACGGAGTTCATTCCCA-GTCTAAG
32757854 GCCTAGTCGA
Statistics
Matches: 188, Mismatches: 31, Indels: 10
0.82 0.14 0.04
Matches are distributed among these distances:
183 7 0.04
184 179 0.95
185 2 0.01
ACGTcount: A:0.21, C:0.25, G:0.28, T:0.26
Consensus pattern (184 bp):
TGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
GATCAGAACAGACCGAGACTTGCGACAGCAGGATCGACAGCACGTAAGAGGGACCGAGCCGATCC
TCGACTTGTACATTCTGCCTCTCCGGTCAGCTGAGCGCCCACATAACCGTTTCG
Found at i:32758001 original size:159 final size:158
Alignment explanation
Indices: 32757809--32758169 Score: 381
Period size: 158 Copynumber: 2.3 Consensus size: 158
32757799 CACATAACCG
* * * *
32757809 TTTCGTGGGTTGGCTTAGCCAGAGGGAGTTCATTCCATGTCTAAGGCCTAG-TCGAA-CTGAGGG
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACC-AGATCGAATC-GAGGG
* * * * ** *
32757872 CTGTGGCAGCAGGACCGATAGCACGCAGAGAGGGATCGGGTTGATCCATGGCTTGCGCATTATGC
64 CTGCGGCAGCAGGACCAACAGCACACAGAG-GGGATCGGGTCAATCCACGGCTTGCGCATTATGC
* *
32757937 CTCTTCAGCCA-GCTCAGCGCCCGTACGCT-T
128 CTC-TCAGACAGGCTCAGCACCCGTACGCTGT
* * * * *
32757967 ATTTCGTGGGTTGACTTTGGCATACGGAGATCATTCCCA-GTCTAAGATCAGATCGGATCGAGGG
1 -TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGACCAGATCGAATCGAGGG
* * * * * *
32758031 TTGCGGCAGCAGGATCAACAGCACACAGAGGGGATCGGGTCAATCCCCGGCTTGTGCCTTCTGCC
64 CTGCGGCAGCAGGACCAACAGCACACAGAGGGGATCGGGTCAATCCACGGCTTGCGCATTATGCC
* * *
32758096 TCTCCGACAGGCTGAGCACCCGTGCGCTGT
129 TCTCAGACAGGCTCAGCACCCGTACGCTGT
*
32758126 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
32758170 TAATATGGAG
Statistics
Matches: 165, Mismatches: 31, Indels: 13
0.79 0.15 0.06
Matches are distributed among these distances:
157 8 0.05
158 83 0.50
159 70 0.42
160 4 0.02
ACGTcount: A:0.20, C:0.25, G:0.30, T:0.25
Consensus pattern (158 bp):
TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCAGATCGAATCGAGGGCT
GCGGCAGCAGGACCAACAGCACACAGAGGGGATCGGGTCAATCCACGGCTTGCGCATTATGCCTC
TCAGACAGGCTCAGCACCCGTACGCTGT
Found at i:32758320 original size:183 final size:184
Alignment explanation
Indices: 32757992--32758352 Score: 528
Period size: 183 Copynumber: 2.0 Consensus size: 184
32757982 TTTGGCATAC
*
32757992 GGAGATCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCGGCAGCAGGATCAACAGCACAC
1 GGAGATCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTACGGCAGCAGGATCAACAGCACAC
* * * * * * *
32758057 AGAGGGGATCGGGTCAATCCCCGGCTTGTGCCTTCTGCCTCTCCGACAGGCTGAGCACCCGTGCG
66 AGAGGGGACCGGGCCAATCCCCAGCTAGCGCATTCTGCCTCTCCGACAGGCTGAGCACCCGTACG
**
32758122 CTGTTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAATAATAT
131 CTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAATAATAT
* * **
32758176 GGAGTTCATTCCCAGTCTAAGATCAGATTGGA-CTGAGGGTTACGGCAGCAGGATC-GTAGCACA
1 GGAGATCATTCCCAGTCTAAGATCAGATCGGATC-GAGGGTTACGGCAGCAGGATCAACAGCACA
* * * *
32758239 CAGAGGGGACCGGGCCAATCCCTAGCTAGCGCATTCTGCCTCTCTGACCGGCTGAGCGCCCGTAC
65 CAGAGGGGACCGGGCCAATCCCCAGCTAGCGCATTCTGCCTCTCCGACAGGCTGAGCACCCGTAC
*
32758304 GCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
130 GCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
32758353 GCCCTAGCCG
Statistics
Matches: 157, Mismatches: 19, Indels: 3
0.88 0.11 0.02
Matches are distributed among these distances:
183 107 0.68
184 50 0.32
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (184 bp):
GGAGATCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTACGGCAGCAGGATCAACAGCACAC
AGAGGGGACCGGGCCAATCCCCAGCTAGCGCATTCTGCCTCTCCGACAGGCTGAGCACCCGTACG
CTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAATAATAT
Found at i:32758353 original size:341 final size:351
Alignment explanation
Indices: 32757876--32758719 Score: 810
Period size: 367 Copynumber: 2.4 Consensus size: 351
32757866 TGAGGGCTGT
* * *** *
32757876 GGCAGCAGGACCGATAGCACGCAGAGAGGGATCGGGTTGATCCATGGCTTGCGCATTATGCCTCT
1 GGCAGCAGGATCG-TAGCACACAGAG-GGGA-CGGGCCAATCCCTGGCTTGCGCATT-TGCCTCT
* * * * * * *
32757941 -TCAGCCAGCTCAGCGCCCGTACGCTTATTTCGTGGGTTGACTTTGGCATACGGAGATCATTCCC
62 CTGA-CCGGCTAAGCGCCCGTACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CC
* * *
32758005 AGTCTAAGATC-AGATCGGATCGAGGGTTGCGGCAGCAGGATCAAC-A-G-CA-CAC-AGA-GGG
125 AGTCTAAGACCTAG-CCGGATCGAGGGTTGCGGCAGCAGGACCAACGACGACAGCACGAGAGGGG
* *
32758063 GATCGGGTCAATCCC-C-G-GC-TTGTG-C-CTT-CTGCCTCTCC-GAC-AGGCTGAGCACCCGT
189 GATCGGGTCAATCCCACTGTGCATTATGCCACTTCCTGCCTCTCCAG-CTA-GCTGAGCACCCGC
* * * * * *
32758119 GCGCT-GTTTTCATGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAATAATATGGAGTT
252 ACGCTCGTTTT-ATGGGTTGACTTAGGCATACGAAATTCATCCCCA-GTCTAAGAATATGGAGTT
* * * *
32758182 CATTCCCAGTCTAAGATCAGATTGGACTGAGGGTTAC
315 CATACCCAGTCTAAGATCAGACTGGACCGACGGTTAC
* *
32758219 GGCAGCAGGATCGTAGCACACAGAGGGGACCGGGCCAATCCCTAGCTAGCGCATTCTGCCTCTCT
1 GGCAGCAGGATCGTAGCACACAGAGGGGA-CGGGCCAATCCCTGGCTTGCGCATT-TGCCTCTCT
*
32758284 GACCGGCTGAGCGCCCGTACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
64 GACCGGCTAAGCGCCCGTACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCA-GT
* *
32758349 CTAAGCCCTAGCCGGATCGAGGGTTGTGGCAGCAGGACCAACAGTGGGATCGACAGCACGTAGAG
128 CTAAGACCTAGCCGGATCGAGGGTTGCGGCAGCAGGACCAAC-----GA-CGACAGCACG-AGAG
**
32758414 GGGGATCGGGTTGATCCCTGACTTGTGCATTATGCCACTTCGACCTGCCTCTCCAGCTAGCTGAG
186 GGGGATCGGGTCAATCCC--AC-TGTGCATTATGCCACTT---CCTGCCTCTCCAGCTAGCTGAG
* * *
32758479 CGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGAAATTCATCCCCAGTCTAAGCATATG
245 CACCCGCACGCTCGTTTTATGGGTTGACTTAGGCATACGAAATTCATCCCCAGTCTAAGAATATG
* * *
32758544 GAGTTCATACCTAGTCTAAGATCAGACTGGGCCGACGGTTGC
310 GAGTTCATACCCAGTCTAAGATCAGACTGGACCGACGGTTAC
** * * * *
32758586 GATAGCAGGATCAGTAGCACATAGAGGGGATGGGCCAATCCCTGGCTTGCACATTTGCCTCTCCG
1 GGCAGCAGGATC-GTAGCACACAGAGGGGACGGGCCAATCCCTGGCTTGCGCATTTGCCTCTCTG
* * * * *
32758651 GCCGGCTAAGCACCCGCACGGC-CGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCAAGT
65 ACCGGCTAAGCGCCCGTAC-GCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCC-AGT
32758715 CTAAG
128 CTAAG
32758720 CCCCAACCGG
Statistics
Matches: 409, Mismatches: 56, Indels: 49
0.80 0.11 0.10
Matches are distributed among these distances:
340 3 0.01
341 117 0.29
342 15 0.04
343 12 0.03
347 1 0.00
349 1 0.00
350 2 0.00
351 3 0.01
353 3 0.01
354 16 0.04
357 1 0.00
359 1 0.00
360 2 0.00
361 4 0.01
362 1 0.00
363 3 0.01
366 67 0.16
367 131 0.32
368 26 0.06
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (351 bp):
GGCAGCAGGATCGTAGCACACAGAGGGGACGGGCCAATCCCTGGCTTGCGCATTTGCCTCTCTGA
CCGGCTAAGCGCCCGTACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAGTCTA
AGACCTAGCCGGATCGAGGGTTGCGGCAGCAGGACCAACGACGACAGCACGAGAGGGGGATCGGG
TCAATCCCACTGTGCATTATGCCACTTCCTGCCTCTCCAGCTAGCTGAGCACCCGCACGCTCGTT
TTATGGGTTGACTTAGGCATACGAAATTCATCCCCAGTCTAAGAATATGGAGTTCATACCCAGTC
TAAGATCAGACTGGACCGACGGTTAC
Found at i:32759059 original size:26 final size:26
Alignment explanation
Indices: 32759009--32759061 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
32758999 GTTGGCTTAG
**
32759009 GCATACGGAGTTCATTCCTGGTCTAA
1 GCATACGGAGTTCATTCCTAATCTAA
32759035 GCATACGGAGTTCATTCCTAATCTAA
1 GCATACGGAGTTCATTCCTAATCTAA
32759061 G
1 G
32759062 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAATCTAA
Found at i:32759981 original size:158 final size:158
Alignment explanation
Indices: 32759654--32760188 Score: 429
Period size: 158 Copynumber: 3.4 Consensus size: 158
32759644 GCCGACTGAC
* * * * * *
32759654 CACCCGCACGTTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGAAT-G
1 CACCCACACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAAG-CTCC
* * * * * * * ** * * * * * *
32759717 GACCAGACCGAGGGTTACGGTAGCAGGATCGATAGCACGCAGGGGGCGACCAAGTCGATCCCCGG
64 AACCGGATCAAGGGTTGCGGCAGCAGGATCGACAGCATACA-GGGGTGATCGAGCCGACCCCCGA
* * * * *
32759782 CTTGCACATTCTACCTCTCTAGTC-GGTCGAG
128 CTTGCACATTATGCCTCTCAAGTCTGCTC-AA
* * * * * *
32759813 CAGCCGCACGCCCGTTTCATTGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCCAAGCTCCAA
1 CACCCACACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCTCCAA
* * * * * *
32759878 CCGG-TCAAGGGTTGTGGTAGCAGGA-CAGGCAGCACATAGAGGGG-GATCGAGCCGATCCCCGG
66 CCGGATCAAGGGTTGCGGCAGCAGGATC-GACAG--CATACAGGGGTGATCGAGCCGACCCCCGA
*
32759940 CTTGCGCATTATGCCTCTCAAG-CTAGCTCAA
128 CTTGCACATTATGCCTCTCAAGTCT-GCTCAA
* * * **
32759971 CACCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCC-TACTCTAAGATCGG
1 CACCCACACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCTCCA
** * * *
32760035 ATTGGATCGAGGGTTGCGGCAGCAGGATCGACAGCATACAGGGGTGATCGGGTCGACCCCCGACT
65 ACCGGATCAAGGGTTGCGGCAGCAGGATCGACAGCATACAGGGGTGATCGAGCCGACCCCCGACT
* * * *
32760100 TGCACATTCTGCCTCTCCAGTCTGCTGAG
130 TGCACATTATGCCTCTCAAGTCTGCTCAA
* * *
32760129 CATCCGCACGCTCGTTTCATGGGTTGGCTTAGGCGTACGGAGTTCATTCCATGTCTAAGC
1 CACCCACACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
32760189 ATACGGAGTT
Statistics
Matches: 300, Mismatches: 63, Indels: 27
0.77 0.16 0.07
Matches are distributed among these distances:
157 12 0.04
158 201 0.67
159 83 0.28
160 4 0.01
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.23
Consensus pattern (158 bp):
CACCCACACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCTCCAA
CCGGATCAAGGGTTGCGGCAGCAGGATCGACAGCATACAGGGGTGATCGAGCCGACCCCCGACTT
GCACATTATGCCTCTCAAGTCTGCTCAA
Found at i:32760146 original size:841 final size:837
Alignment explanation
Indices: 32759112--32763533 Score: 3491
Period size: 841 Copynumber: 5.3 Consensus size: 837
32759102 CGACTTGCAC
* * * * * * *
32759112 CCTCTTCGGCCGGCTCAACGCTCGAACGCTCATTTCATGGGTTGACTTATGCATACGAAATTCAT
1 CCTC-TCGGCTGGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTATGCATACGGAGTTCAT
** * * * * * * * *
32759177 TCTTAGTCTATGATCGGACCGGATCGAGGGTTGCGGGAGTAGGATCG--AGAACATGAAGGGGGG
65 TCCCAATCTAAGATCAGATCGGA-CGAGGGTTGTGGCAGCAGGATCGACAGCACAT--A-GGGGG
* * * * * *
32759240 ATCG-GGTCGAT-CCCGTGCTTGCGTATTCTGCCTCTCTGGCCGGCTGAGTGC-CCGGACGTTCG
126 ATCGAGCT-GATCCCCG-GCTTGCGCATTCTGCCTCTCCGG-CTGCTGA--GCACCGCACGCTCG
*
32759302 TTTCGTGGGTTGGCTTAGGCATACGGAGTTGATTCCATGTCTAAGCATACGGAGTTCATTCCCAG
186 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAG
* * * * ** *
32759367 TCTATGATCGGACTGGACTGAGGGTTGC-AGCAGCAGGACCAGC-GACAGGATCGGCAGCACGTA
251 TCTAAGATCGGACCGGACCGAGGGTTGCGA-CAGCAAGACCAGCAG-CAGGATCGATAGCACGCA
* * * * **
32759430 TGGGGGACCAGGCT-GATCCTTGGCTTGCACATTCTGCCTCTCCGATCGGTTGAG-TGCCAACAC
314 GGGGGGACCAGGCTCGATCCCTGGCTTGCACATTCTGCCTCTCTGATCGGCTGAGCT-CCCGCAC
* * *
32759493 GCTCGTTTCATGGGTTGGCTTAGGCATAC-AGAGTTCATTCCATGTCTTAGCCCCAG-TCGGACC
378 ACTCGTTTCATGGGTTGGCTTAGGCATACGA-AGTTCATTCCATCTCTTAGCCCCAGCT-AGACC
* * ** ** * * * * *
32759556 GAGGGTTGTGGCAGCAAGACTGACAGCGGGATCGACAGCGTGCAGAGGGGGATCGGGCTGATCCC
441 GAGGGTTGTGGCAGCAAGACCGATAATGGGATCGACAGCACGTAGAAGGGGA-CCGACTAATCCC
** * * * * * *
32759621 AGTTTACGCATTATGCCTC-TCTGGCC-GACTGACCACCCGCACGTTCGTTTCATGGGTTGACTT
505 AACTTGCACATTATGCCTCTTC-GACCAG-CTGACCTCCCGCACGCTCGTTTCGTGGGTTGACTT
* * * * *
32759684 AGGCATACGGAGTTCATCCCCAGTCTAAGAAT-GGACCAGACCGAGGGTTACGGTAGCAGGATCG
568 AGGCATACAGAGTTCATCGCCAGTCTAAG-ATCGGACCAGACCGAGGGTTTCGGCAACAGGATCG
* ** * * * * * *
32759748 ATAGCACGCAGGGGGCGACCAAGTCGATCCCCGGCTTGCACATTCTACCTCTCTAGTCGGTC-GA
632 ACAGCACGCAGGGGGCGACCGGGCCGATCCCTGACTTGCGCATTCTGCCTCTCTGGTCGGTCTGA
* * * * *
32759812 GCAGCCGCACGCCCGTTTCATTGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCCAAGCTCCA
697 GCACCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA
* * * * * * ** * *
32759877 ACCGGTCAAGGGTTGTGGTAGCAGGACAGGCAGCACATAGAGGGGGATCGAGCCGATCCCCGGCT
762 GCCGGCCGAGGGTTGTGGTAGCGGGACCGGTAGCACCCAAAGGGGGATCGAGCCGATCCCCGACT
* *
32759942 TGCGCATTATG
827 TACACATTATG
* * * * * *
32759953 CCTCTCAAGCTAGCTCAACACCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT
1 CCTCTC-GGCTGGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTATGCATACGGAGTTCAT
* * * * * * *
32760018 TCCTACTCTAAGATCGGATTGGATCGAGGGTTGCGGCAGCAGGATCGACAGCATACAGGGGTGAT
65 TCCCAATCTAAGATCAGATCGGA-CGAGGGTTGTGGCAGCAGGATCGACAGCACATAGGGG-GAT
* * * * *
32760083 CG-GGTCGACCCCCGACTTGCACATTCTGCCTCTCCAGTCTGCTGAGCATCCGCACGCTCGTTTC
128 CGAGCT-GATCCCCGGCTTGCGCATTCTGCCTCTCC-GGCTGCTGAGCA-CCGCACGCTCGTTTC
* *
32760147 ATGGGTTGGCTTAGGCGTACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTA
190 GTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTA
* * *
32760212 AGATCGGACCGGACCAAGGGTTGCGACAGCAAGACTAGCAGCAGGATCGATAGCACACAGGGGGG
255 AGATCGGACCGGACCGAGGGTTGCGACAGCAAGACCAGCAGCAGGATCGATAGCACGCAGGGGGG
** * * *
32760277 ACCAGGC-CGATCCCTGGCTTGTGCATTCTGTCTCTCTG-GCTGGCTGAGCTCCCGCACACTCTT
320 ACCAGGCTCGATCCCTGGCTTGCACATTCTGCCTCTCTGATC-GGCTGAGCTCCCGCACACTCGT
* *
32760340 TTCGTGGGTTGGCTTAGGCATACGAATTTCATTCCATCTCTTAGCCCCAGCTAGACCGAGGGTTG
384 TTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATCTCTTAGCCCCAGCTAGACCGAGGGTTG
*
32760405 TGGCAGCAGGACCGATAATGGGATCGACAGCACGTAGAAGGGGACCGACTAATCCCAACTTGCAC
449 TGGCAGCAAGACCGATAATGGGATCGACAGCACGTAGAAGGGGACCGACTAATCCCAACTTGCAC
*
32760470 ATTATGCCTCTTCGACCAGCTGAGCTCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGA
514 ATTATGCCTCTTCGACCAGCTGACCTCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGA
* * * *
32760535 GTTCATTGCCAGTCTAAGATCGGACCAGACCGAGGGTTTTGGCAACAAGATCGACAGTACGCAGG
579 GTTCATCGCCAGTCTAAGATCGGACCAGACCGAGGGTTTCGGCAACAGGATCGACAGCACGCAGG
* ** * *
32760600 GGGTGATTGGGTCGATCCCTGACTTGCGCATTCTGCCTCTCTGGTCGG-CTGAGCACCCGCATGC
644 GGGCGACCGGGCCGATCCCTGACTTGCGCATTCTGCCTCTCTGGTCGGTCTGAGCACCCGCACGC
* *
32760664 CCATTTCATGGGTTGGCTTAGGCATAGGGTGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGG
709 CCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGG-CCGAGG
* * **
32760729 GTTGTGGTAGCGGGACCGGTAGCACCCAAAGAGGGATCGAGCTGATCTTCGACTTACACATTATG
773 GTTGTGGTAGCGGGACCGGTAGCACCCAAAGGGGGATCGAGCCGATCCCCGACTTACACATTATG
* * * * * *
32760794 CCTCTTCGGCTGGCTTAGTGCCCGTACGTTTGTTTTATGGGTTGACTTATGCATACGGAGTTCAT
1 CCTC-TCGGCTGGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTATGCATACGGAGTTCAT
* ** * *
32760859 TCCCAATCTAAGATCAGATCGGACTAAGGGTTGTGATAGCAGTATCGATAGCACATAGGGGGATC
65 TCCCAATCTAAGATCAGATCGGAC-GAGGGTTGTGGCAGCAGGATCGACAGCACATAGGGGGATC
* * ** * * *
32760924 GAGCTGATCCCCGGCTTCCGCATTTTGCCTCTCCGGCTGGCTGAGCACCTATACACTCATTTCTT
129 GAGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCT-GCTGAGCACC-GCACGCTCGTTTCGT
* * *
32760989 GGGTTGGCTTAGGCATACAGAGTTCATTCCCTATCTAAG-AT-C--AG---A---CC-G-----G
192 GGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG
* * * * *
32761038 AT-----C--A---AGGGTTGC-AGTAGCAGGACCAGCAGTAGGATCGGTAGCATGCAGGGAGGG
257 ATCGGACCGGACCGAGGGTTGCGA-CAGCAAGACCAGCAGCAGGATCGATAGCACGCAGGG-GGG
* * * ** * * *
32761092 ACC-GGGTCGATCCCCGGCTTGCACATTCTACCTCTCTGATCGATTGAGCACCTGCACACTTGTT
320 ACCAGGCTCGATCCCTGGCTTGCACATTCTGCCTCTCTGATCGGCTGAGCTCCCGCACACTCGTT
* * * * * * ** **
32761156 TCATGGGTTGGATTAGGCGTACGGAGTTCATTCCATGTCTAAGCCCCAACCGGATTGAGGGTTGT
385 TCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATCTCTTAGCCCCAGCTAGACCGAGGGTTGT
* * * * * * *
32761221 GGTAGC-AG---GAT--T-GG-T----AGCACGAAGAGGGGGATCGGGCTGATCACCGACTTGCA
450 GGCAGCAAGACCGATAATGGGATCGACAGCACGTAGAAGGGGA-CCGACTAATC-CCAACTTGCA
* ** * * *
32761274 CATTATGCCTC-TC--CGA-CTGACCTCTCCAATAGGCTCCTTTCGTGGGTTGACTTAGCCATAC
513 CATTATGCCTCTTCGACCAGCTGACCTC-CC-GCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
* *
32761335 AGAGTTCATCACCAGTCTAAGCATACAGATTTCATTCCTAGTCTAAGATCGAACCGAACTGAGGG
576 AGAGTTCATCGCCAGTCTAAG-AT-C-G----GA---C----C----A--G-A-C---C-GAGGG
* * * * * *
32761400 TTGCGACAGCAGGATCGACAGCATGCAGGGGG-GACCGGACCGATCCCTGGCTTGCGCATTCTGC
615 TTTCGGCAACAGGATCGACAGCACGCAGGGGGCGACCGGGCCGATCCCTGACTTGCGCATTCTGC
* * * *
32761464 CTCT-TCGGTC-GACTGAGCGCCCGCACGCCTGA-TTCATGGGTTGGCTTAGGCATTGGGAGTTC
680 CTCTCT-GGTCGGTCTGAGCACCCGCACGCC-CATTTCATGGGTTGGCTTAGGCATAGGGAGTTC
* * * * * * ** *
32761526 ATTCCATGTCTAGGCCCCAGCCAGACCGAGGGTTGTGATAGCGAGATCGATAGCACGTAGAGGGG
743 ATTCCATGTCTAAGCCCCAGCC-GGCCGAGGGTTGTGGTAGCGGGACCGGTAGCACCCAAAGGGG
* * *
32761591 GA-CCAGGCC-ATCCCC-AGCTTGCGCATTATG
807 GATCGA-GCCGATCCCCGA-CTTACACATTATG
** * *
32761621 CCTCTCCGATTGGCTTAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCAT
1 CCTCT-CGGCTGGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTATGCATACGGAGTTCAT
* * * * * * * *
32761686 TCCCAGTCTAAGATCAAACCAGACCGAGGGTTGTGGCAGTAGGATAGACAGCACGTAGGGGGGAC
65 TCCCAATCTAAGATCAGATCGGA-CGAGGGTTGTGGCAGCAGGATCGACAGCACATA-GGGGGAT
* * *** * *
32761751 CGAGCTGATCCCTGGC-TGATCG-A--CAG-CAAGCAGAG-GGACTGAGC-CCGCACGCTCGTTT
128 CGAGCTGATCCCCGGCTTG--CGCATTCTGCCTCTCCG-GCTG-CTGAGCACCGCACGCTCGTTT
32761809 CGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCT
189 CGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCT
* *
32761874 AAGATCAGACCGGACCGAGGGTTGCGACAGCAAGACTAGCAGCAGGATCGATAGCACGCAGGGGG
254 AAGATCGGACCGGACCGAGGGTTGCGACAGCAAGACCAGCAGCAGGATCGATAGCACGCAGGGGG
** ** * *
32761939 GACCA-AATCGATCCCTGGCTTGTGCATTCTGCCTCTCTTGCT-GGCTGAGCTCCCGCACACTCT
319 GACCAGGCTCGATCCCTGGCTTGCACATTCTGCCTCTC-TGATCGGCTGAGCTCCCGCACACTCG
* *
32762002 TTTCGTGGGTTGGCTTAGGCATACGAATTTCATTCCATCTCTTAGCCCCAGCTAGACCGAGGGTT
383 TTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATCTCTTAGCCCCAGCTAGACCGAGGGTT
*
32762067 GTGGCAGCAGGACCGATAATGGGATCGACAGCACGTAGAAGGGGACCGACTAATCCCAACTTGCA
448 GTGGCAGCAAGACCGATAATGGGATCGACAGCACGTAGAAGGGGACCGACTAATCCCAACTTGCA
*
32762132 CATTATGCCTCTTCGACCAGCTGAGCTCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAG
513 CATTATGCCTCTTCGACCAGCTGACCTCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAG
* * * *
32762197 AGTTCATCGCCAGTCTAAGATCGAACCGGACCGAGGGTTTTGGCAACAGGATCGACAGTACGCAG
578 AGTTCATCGCCAGTCTAAGATCGGACCAGACCGAGGGTTTCGGCAACAGGATCGACAGCACGCAG
* * *
32762262 GGGGCGATCGGGCCGATCCCTGACTTACGCATTCTGCCTCTCTGGTCGGT-TGAGCACCCGCATG
643 GGGGCGACCGGGCCGATCCCTGACTTGCGCATTCTGCCTCTCTGGTCGGTCTGAGCACCCGCACG
* *
32762326 CCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACTGAG
708 CCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGG-CCGAG
* * ** *
32762391 GGTTGTGGTAGCGGGACCGGTAGCACCCAAAGGGGGATCGGGCTGATCTTCGACTTACATATTAT
772 GGTTGTGGTAGCGGGACCGGTAGCACCCAAAGGGGGATCGAGCCGATCCCCGACTTACACATTAT
32762456 G
837 G
* * * * *
32762457 CCTCTTTGGCTGGCTCAGTGCCCGTACGTTTGTTTCATGGGTTGACTTATGCATACGGAGTTCAT
1 CCTC-TCGGCTGGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTATGCATACGGAGTTCAT
* ** * *
32762522 TCCCAATCTAAGATCAGATCGGACTAAGGGTTGTGATAGCAGTATCGATAGCACATAGGGGGATC
65 TCCCAATCTAAGATCAGATCGGAC-GAGGGTTGTGGCAGCAGGATCGACAGCACATAGGGGGATC
* * ** * * *
32762587 GAGCTGATCCCCGGCTTCCGCATTTTGCCTCTCCGGCTGGCTGAGCACCTATACACTCATTTCTT
129 GAGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCT-GCTGAGCACC-GCACGCTCGTTTCGT
* * *
32762652 GGGTTGGCTTAGGCATACAGAGTTCATTCCCTATCTAAG-AT-C--AG---A---CC-G-----G
192 GGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG
* * * *
32762701 AT-----C--A---AGGGTTGC-AGTAGCAGGACCAGCAGTAGGATCG-TAGCATGCA-GGGGGA
257 ATCGGACCGGACCGAGGGTTGCGA-CAGCAAGACCAGCAGCAGGATCGATAGCACGCAGGGGGGA
* * * * ** * * *
32762753 CCGGGC-CGATCCCCGGCTTGCGCATTCTACCTCTCTGATCGATTGAGCACCTGCACACTTGTTT
321 CCAGGCTCGATCCCTGGCTTGCACATTCTGCCTCTCTGATCGGCTGAGCTCCCGCACACTCGTTT
* * * * * ** **
32762817 CATGGGTTGGATTAGGCGTACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATTGAGGGTTGTG
386 CATGGGTTGGCTTAGGCATACGAAGTTCATTCCATCTCTTAGCCCCAGCTAGACCGAGGGTTGTG
* * * * * * **
32762882 GTAGC-AG---GAT--T-GG-T----AGCACGAAGAGGGGGATCGGGCTGATCACCGGCTTGCAC
451 GCAGCAAGACCGATAATGGGATCGACAGCACGTAGAAGGGGA-CCGACTAATC-CCAACTTGCAC
** * * *
32762935 ATTATGCCTC-TCTG---A-CTGACCTCTCCAATAGGCTC-TTTCATGGGTTGACTTAGCCATAC
514 ATTATGCCTCTTC-GACCAGCTGACCTC-CC-GCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
* *
32762994 AGAGTTCATCCCCAGTCTAAGCATACAGATTTCATTCCTAGTCTAAGATCGAACCGAACTGAGGG
576 AGAGTTCATCGCCAGTCTAAG-AT-C-G----GA---C----C----A--G-A-C---C-GAGGG
* * * * * *
32763059 TTGCGACAGCAGGATCGACAGCATGCA-GGGG-GACCGGACCGATCCCTGGCTTGCGCATTCTGC
615 TTTCGGCAACAGGATCGACAGCACGCAGGGGGCGACCGGGCCGATCCCTGACTTGCGCATTCTGC
* * *
32763122 CTCTC-GGTC-GACTGAGCGCCCGCACGCCTGA-TTCATGGGTTGGCTTAGGCAT-GGGAGTTCA
680 CTCTCTGGTCGGTCTGAGCACCCGCACGCC-CATTTCATGGGTTGGCTTAGGCATAGGGAGTTCA
* * * * ** *
32763183 TTCCATGTCT-AGCCCCAGCCAGACCGAGGGTTGTGATAGCGAGACCGATAGCACGTAGAGGGGG
744 TTCCATGTCTAAGCCCCAGCC-GGCCGAGGGTTGTGGTAGCGGGACCGGTAGCACCCAAAGGGGG
* * *
32763247 A-CCAGGCC-ATCCCC-AGCTTGCGCATTATG
808 ATCGA-GCCGATCCCCGA-CTTACACATTATG
** * *
32763276 CCTCTCCGATTGGCTTAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCAT
1 CCTCT-CGGCTGGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTATGCATACGGAGTTCAT
* * * * * * * *
32763341 TCCCAGTCTAAGATCAAACCAGACCGAGGGTTGTGGCAGTAGGATAGACAGCACGTAGGGGGGAC
65 TCCCAATCTAAGATCAGATCGGA-CGAGGGTTGTGGCAGCAGGATCGACAGCACATA-GGGGGAT
* * *** * *
32763406 CGAGCTGATCCCTGGC-TGATCG-A--CAG-CAAGCAGAG-GGACTGAGC-CCGCACGCTCGTTT
128 CGAGCTGATCCCCGGCTTG--CGCATTCTGCCTCTCCG-GCTG-CTGAGCACCGCACGCTCGTTT
32763464 CGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCT
189 CGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCT
32763529 AAGAT
254 AAGAT
32763534 TTTGAGCCAC
Statistics
Matches: 2858, Mismatches: 525, Indels: 406
0.75 0.14 0.11
Matches are distributed among these distances:
798 7 0.00
799 45 0.02
800 21 0.01
801 17 0.01
802 25 0.01
803 61 0.02
804 12 0.00
805 23 0.01
806 3 0.00
807 1 0.00
808 5 0.00
809 2 0.00
810 1 0.00
811 7 0.00
812 110 0.04
813 12 0.00
814 67 0.02
815 153 0.05
816 6 0.00
817 13 0.00
818 4 0.00
819 118 0.04
820 70 0.02
821 25 0.01
822 40 0.01
823 81 0.03
824 17 0.01
825 39 0.01
826 5 0.00
827 120 0.04
828 158 0.06
829 36 0.01
830 5 0.00
831 3 0.00
833 4 0.00
834 36 0.01
835 159 0.06
836 119 0.04
837 4 0.00
838 12 0.00
839 21 0.01
840 359 0.13
841 548 0.19
842 12 0.00
843 4 0.00
844 1 0.00
846 2 0.00
848 107 0.04
849 42 0.01
850 2 0.00
852 3 0.00
853 1 0.00
854 1 0.00
855 2 0.00
856 1 0.00
857 1 0.00
858 21 0.01
859 11 0.00
860 62 0.02
861 4 0.00
862 7 0.00
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (837 bp):
CCTCTCGGCTGGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTATGCATACGGAGTTCATT
CCCAATCTAAGATCAGATCGGACGAGGGTTGTGGCAGCAGGATCGACAGCACATAGGGGGATCGA
GCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCTGCTGAGCACCGCACGCTCGTTTCGTGGGT
TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
GACCGGACCGAGGGTTGCGACAGCAAGACCAGCAGCAGGATCGATAGCACGCAGGGGGGACCAGG
CTCGATCCCTGGCTTGCACATTCTGCCTCTCTGATCGGCTGAGCTCCCGCACACTCGTTTCATGG
GTTGGCTTAGGCATACGAAGTTCATTCCATCTCTTAGCCCCAGCTAGACCGAGGGTTGTGGCAGC
AAGACCGATAATGGGATCGACAGCACGTAGAAGGGGACCGACTAATCCCAACTTGCACATTATGC
CTCTTCGACCAGCTGACCTCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATC
GCCAGTCTAAGATCGGACCAGACCGAGGGTTTCGGCAACAGGATCGACAGCACGCAGGGGGCGAC
CGGGCCGATCCCTGACTTGCGCATTCTGCCTCTCTGGTCGGTCTGAGCACCCGCACGCCCATTTC
ATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGCCGAGGGTTGTGGT
AGCGGGACCGGTAGCACCCAAAGGGGGATCGAGCCGATCCCCGACTTACACATTATG
Found at i:32760194 original size:26 final size:26
Alignment explanation
Indices: 32760164--32760213 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
32760154 GGCTTAGGCG
32760164 TACGGAGTTCATT-CCATGTCTAAGCA
1 TACGGAGTTCATTCCCA-GTCTAAGCA
32760190 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
32760214 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCA
Found at i:32760881 original size:159 final size:157
Alignment explanation
Indices: 32760613--32761061 Score: 354
Period size: 157 Copynumber: 2.8 Consensus size: 157
32760603 TGATTGGGTC
* * * * * * *
32760613 GATCCCTGACTTGCGCATTCTGCCTCTCTGG-TCGGCTGAGCACCCGCATGC-C-CATTTCATGG
1 GATCCCCGACTTACACATTATGCCTCTCCGGCT-GGCTGAGCA-CC-CATACACTCATTTCTTGG
* ** * * ** * *
32760675 GTTGGCTTAGGCATAGGGTGTTCATT-CCATGTCTAAGCCCCAG-TCGGACCGAGGGTTGTGGTA
63 GTTGACTTAGGCATACAGAGTTCATTCCCA-ATCTAAG-ATCAGATCGGACCAAGGGTTGTGATA
* *
32760738 GCGGGACCGGTAGCACCCAAAGAGGGATCGAGCT
126 GCAGGACCGATAGCA--CAAAGAGGGATCGAGCT
** * * ** * ** **
32760772 GATCTTCGACTTACACATTATGCCTCTTCGGCTGGCTTAGTGCCCGTACGTTTGTTT-TATGGGT
1 GATCCCCGACTTACACATTATGCCTCTCCGGCTGGCTGAGCACCCATACACTCATTTCT-TGGGT
* * *
32760836 TGACTTATGCATACGGAGTTCATTCCCAATCTAAGATCAGATCGGACTAAGGGTTGTGATAGCAG
65 TGACTTAGGCATACAGAGTTCATTCCCAATCTAAGATCAGATCGGACCAAGGGTTGTGATAGCAG
* * * *
32760901 TATCGATAGCACATAGGGGGATCGAGCT
130 GACCGATAGCACAAAGAGGGATCGAGCT
* * * * *
32760929 GATCCCCGGCTTCCGCATTTTGCCTCTCCGGCTGGCTGAGCACCTATACACTCATTTCTTGGGTT
1 GATCCCCGACTTACACATTATGCCTCTCCGGCTGGCTGAGCACCCATACACTCATTTCTTGGGTT
* * * * *
32760994 GGCTTAGGCATACAGAGTTCATTCCCTATCTAAGATCAGACCGGATCAAGGGTTG-CAGTAGCAG
66 GACTTAGGCATACAGAGTTCATTCCCAATCTAAGATCAGATCGGACCAAGGGTTGTGA-TAGCAG
32761058 GACC
130 GACC
32761062 AGCAGTAGGA
Statistics
Matches: 223, Mismatches: 59, Indels: 18
0.74 0.20 0.06
Matches are distributed among these distances:
156 1 0.00
157 121 0.54
158 6 0.03
159 91 0.41
160 4 0.02
ACGTcount: A:0.20, C:0.25, G:0.27, T:0.27
Consensus pattern (157 bp):
GATCCCCGACTTACACATTATGCCTCTCCGGCTGGCTGAGCACCCATACACTCATTTCTTGGGTT
GACTTAGGCATACAGAGTTCATTCCCAATCTAAGATCAGATCGGACCAAGGGTTGTGATAGCAGG
ACCGATAGCACAAAGAGGGATCGAGCT
Found at i:32761739 original size:158 final size:157
Alignment explanation
Indices: 32761355--32761752 Score: 401
Period size: 158 Copynumber: 2.5 Consensus size: 157
32761345 ACCAGTCTAA
* * * * * *
32761355 GCATACAGATTTCATTCCTAGTCTAAGATCGAACC-GAACTGAGGGTTGCGACAGCAGGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAG-ACCGAGGGTTGTGACAG-AGGATCGAC
* * ** * * *
32761419 AGCATGCAGGGGGGACCGGACCGATCCCTGGCTTGCGCATTCTGCCTCTTCGGTCGACTGAGCGC
64 AGCACGTAGGGGGGACCGGACCGATCCCCAGCTTGCGCATTATGCCTCTCCGATCGACTGAGCGC
*
32761484 CCGCACGCCTGATTCATGGGTTGGCTTAG
129 CCGCACGCCTGATTCATGGGTTGACTTAG
** * ** * * * * *
32761513 GCATTGGGAGTTCATT-CCATGTCTAGGCCCCAGCCAGACCGAGGGTTGTGATAGCGAGATCGAT
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCAAACCAGACCGAGGGTTGTGACAGAG-GATCGAC
* * *
32761577 AGCACGTAGAGGGGGACCAGG-CC-ATCCCCAGCTTGCGCATTATGCCTCTCCGATTGGCTTAGC
64 AGCACGTAG-GGGGGACC-GGACCGATCCCCAGCTTGCGCATTATGCCTCTCCGATCGACTGAGC
* * *
32761640 GCCCGCACG-CTCGTTTCGTGGGTTGACTTAT
127 GCCCGCACGCCT-GATTCATGGGTTGACTTAG
* *
32761671 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGTGGCAGTAGGATAGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGTGACAG-AGGATCGACA
32761736 GCACGTAGGGGGGACCG
65 GCACGTAGGGGGGACCG
32761753 AGCTGATCCC
Statistics
Matches: 191, Mismatches: 41, Indels: 18
0.76 0.16 0.07
Matches are distributed among these distances:
156 1 0.01
157 13 0.07
158 160 0.84
159 15 0.08
160 2 0.01
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.22
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGTGACAGAGGATCGACAG
CACGTAGGGGGGACCGGACCGATCCCCAGCTTGCGCATTATGCCTCTCCGATCGACTGAGCGCCC
GCACGCCTGATTCATGGGTTGACTTAG
Found at i:32761860 original size:26 final size:26
Alignment explanation
Indices: 32761824--32761876 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
32761814 GTTGGCTTAG
32761824 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
32761850 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
32761876 G
1 G
32761877 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:32762430 original size:159 final size:158
Alignment explanation
Indices: 32762262--32762948 Score: 461
Period size: 159 Copynumber: 4.3 Consensus size: 158
32762252 CAGTACGCAG
* * * * * **
32762262 GGGGCGATCGGGCCGATCCCTGACTTACGCATTCTGCCTCTCTGG-TCGGTTGAGCACCCGCATG
1 GGGG-GATCGGGCTGATCCCCGGCTTACGCATTATGCCTCTCTGGCT-GGCTGAGCACCCGCACA
* * * * *
32762326 CCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCGGACTGA
64 CCCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATATCTAAG-ACCAGACCGGACTAA
*
32762390 GGGTTGTGGTAGCGGGACCGGTAGCACCCAAA
128 GGGTTGTGGTAGCAGGACCGGTAGCA-CCAAA
** * ** * * ** * ***
32762422 GGGGGATCGGGCTGATCTTCGACTTACATATTATGCCTCTTTGGCTGGCTCAGTGCCCGTACGTT
1 GGGGGATCGGGCTGATCCCCGGCTTACGCATTATGCCTCTCTGGCTGGCTGAGCACCCGCACACC
** * * * *
32762487 TGTTTCATGGGTTGACTTATGCATACGGAGTTCATTCCCA-ATCTAAGATCAGATCGGACTAAGG
66 CATTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATATCTAAGACCAGACCGGACTAAGG
* * * * *
32762551 GTTGTGATAGCAGTATCGATAGCA-CATA
130 GTTGTGGTAGCAGGACCGGTAGCACCAAA
* * * * *** *
32762579 GGGGGATCGAGCTGATCCCCGGCTTCCGCATTTTGCCTCTCCGGCTGGCTGAGCACCTATACACT
1 GGGGGATCGGGCTGATCCCCGGCTTACGCATTATGCCTCTCTGGCTGGCTGAGCACCCGCACACC
* * * *
32762644 CATTTCTTGGGTTGGCTTAGGCATACAGAGTTCATTCCCTATCTAAGATCAGACCGGA-TCAAGG
66 CATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATATCTAAGACCAGACCGGACT-AAGG
** * *
32762708 GTTGCAGTAGCAGGACCAGCAGTAGGATCGTAGCATGCA
130 GTTGTGGTAGCAGGACC-G--GTA-G--C--ACCA--AA
* * * * * * ** *
32762747 GGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCT-GATCGATTGAGCACCTGCACAC
1 GGGGGATCGGGCTGATCCCCGGCTTACGCATTATGCCTCTCTGGCT-GGCTGAGCACCCGCACAC
*** * * * * * *
32762811 TTGTTTCATGGGTTGGATTAGGCGTACGGAGTTCATTCCATGTCTAAGCCCCAG-CCGGATTGAG
65 CCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATATCTAAG-ACCAGACCGGACTAAG
** *
32762875 GGTTGTGGTAGCAGGATTGGTAGCACGAAGA
129 GGTTGTGGTAGCAGGACCGGTAGCACCAA-A
* * *
32762906 GGGGGATCGGGCTGATCACCGGCTTGCACATTATGCCTCTCTG
1 GGGGGATCGGGCTGATCCCCGGCTTACGCATTATGCCTCTCTG
32762949 ACTGACCTCT
Statistics
Matches: 407, Mismatches: 99, Indels: 42
0.74 0.18 0.08
Matches are distributed among these distances:
156 3 0.01
157 114 0.28
158 4 0.01
159 146 0.36
160 12 0.03
161 1 0.00
162 1 0.00
163 1 0.00
164 1 0.00
165 4 0.01
166 2 0.00
167 3 0.01
168 111 0.27
169 4 0.01
ACGTcount: A:0.20, C:0.25, G:0.29, T:0.26
Consensus pattern (158 bp):
GGGGGATCGGGCTGATCCCCGGCTTACGCATTATGCCTCTCTGGCTGGCTGAGCACCCGCACACC
CATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATATCTAAGACCAGACCGGACTAAGGG
TTGTGGTAGCAGGACCGGTAGCACCAAA
Found at i:32763019 original size:26 final size:26
Alignment explanation
Indices: 32762989--32763040 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
32762979 TTGACTTAGC
32762989 CATACAGAGTTCATCCCCAGTCTAAG
1 CATACAGAGTTCATCCCCAGTCTAAG
* * *
32763015 CATACAGATTTCATTCCTAGTCTAAG
1 CATACAGAGTTCATCCCCAGTCTAAG
32763041 ATCGAACCGA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.27, G:0.13, T:0.29
Consensus pattern (26 bp):
CATACAGAGTTCATCCCCAGTCTAAG
Found at i:32763280 original size:155 final size:159
Alignment explanation
Indices: 32763085--32763375 Score: 362
Period size: 156 Copynumber: 1.9 Consensus size: 159
32763075 GACAGCATGC
** * *
32763085 AGGGGGACCGGACCGATCCCTGGCTTGCGCATTCTGCCTCT-CGGTCGACTGAGCGCCCGCACGC
1 AGGGGGACCGGACCGATCCCCAGCTTGCGCATTATGCCTCTCCGATCGACTGAGCGCCCGCACGC
* * * * *
32763149 -CTGATTCATGGGTTGGCTTAGGCAT-GGGAGTTCATT-CCATGTCT-AGCCCCAGCCAGACCGA
66 TC-GATTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGACCAAACCAGACCGA
32763210 GGGTTGTGATAGCGAGACCGATAGCACGTAG
129 GGGTTGTGATAGCGAGACCGATAGCACGTAG
* * *
32763241 AGGGGGACCAGG-CC-ATCCCCAGCTTGCGCATTATGCCTCTCCGATTGGCTTAGCGCCCGCACG
1 AGGGGGACC-GGACCGATCCCCAGCTTGCGCATTATGCCTCTCCGATCGACTGAGCGCCCGCACG
* * * *
32763304 CTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAG
65 CTCGATTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGACCAAACCAGACCGAG
32763369 GGTTGTG
130 GGTTGTG
32763376 GCAGTAGGAT
Statistics
Matches: 113, Mismatches: 16, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
155 23 0.20
156 49 0.43
157 17 0.15
158 24 0.21
ACGTcount: A:0.19, C:0.29, G:0.30, T:0.23
Consensus pattern (159 bp):
AGGGGGACCGGACCGATCCCCAGCTTGCGCATTATGCCTCTCCGATCGACTGAGCGCCCGCACGC
TCGATTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGACCAAACCAGACCGAGG
GTTGTGATAGCGAGACCGATAGCACGTAG
Found at i:32763348 original size:338 final size:338
Alignment explanation
Indices: 32762731--32763352 Score: 788
Period size: 338 Copynumber: 1.8 Consensus size: 338
32762721 GACCAGCAGT
* * *
32762731 AGGATCGTAGCATGCAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCTGATCGAT
1 AGGATCGCAGCATGCAGGGGGACCGGACCGATCCCCGGCTTGCGCATTCTACCTCTCTGATCGAC
* * * *
32762796 TGAGCACCTGCACACTTGTTTCATGGGTTGGATTAGGCGTACGGAGTTCATTCCATGTCTAAGCC
66 TGAGCACCCGCACACCTGATTCATGGGTTGGATTAGGCATACGGAGTTCATTCCATGTCTAAGCC
* ** * ** * * * *
32762861 CCAGCCGGATTGAGGGTTGTGGTAGCAGGATTGGTAGCACGAAGAGGGGGATCGGGCTGATCACC
131 CCAGCCAGACCGAGGGTTGTGATAGCAGGACCGATAGCACGAAGAGGGGGACCAGGCTCATCACC
* * * * *
32762926 GGCTTGCACATTATGCCTCTCTGACTGACCTCTCCAATAGGCTCTTTCATGGGTTGACTTAGCCA
196 AGCTTGCACATTATGCCTCTCCGACTGACCTCGCCAACACGCTCTTTCATGGGTTGACTTAGCCA
32762991 TACAGAGTTCATCCCCAGTCTAAGCATACAGATTTCATTCCTAGTCTAAGATCGAACCGAACTGA
261 TACAGAGTTCATCCCCAGTCTAAGCATACAGATTTCATTCCTAGTCTAAGATCGAACCGAACTGA
32763056 GGGTTGCGACAGC
326 GGGTTGCGACAGC
* * *
32763069 AGGATCGACAGCATGCAGGGGGACCGGACCGATCCCTGGCTTGCGCATTCTGCCTCTC-GGTCGA
1 AGGATCG-CAGCATGCAGGGGGACCGGACCGATCCCCGGCTTGCGCATTCTACCTCTCTGATCGA
* * * *
32763133 CTGAGCGCCCGCACGCCTGATTCATGGGTTGGCTTAGGCAT-GGGAGTTCATTCCATGTCT-AGC
65 CTGAGCACCCGCACACCTGATTCATGGGTTGGATTAGGCATACGGAGTTCATTCCATGTCTAAGC
* *
32763196 CCCAGCCAGACCGAGGGTTGTGATAGC-GAGACCGATAGCACGTAGAGGGGGACCAGGC-CATCC
130 CCCAGCCAGACCGAGGGTTGTGATAGCAG-GACCGATAGCACGAAGAGGGGGACCAGGCTCATCA
* * * * ** *
32763259 CCAGCTTGCGCATTATGCCTCTCCGATTGGCTTAGCGCCCGCACGCTCGTTTCGTGGGTTGACTT
194 CCAGCTTGCACATTATGCCTCTCCGACTGACCT--CGCCAACACGCTC-TTTCATGGGTTGACTT
* *
32763324 ATG-CATACGGAGTTCATTCCCAGTCTAAG
256 A-GCCATACAGAGTTCATCCCCAGTCTAAG
32763353 ATCAAACCAG
Statistics
Matches: 238, Mismatches: 40, Indels: 12
0.82 0.14 0.04
Matches are distributed among these distances:
335 31 0.13
336 49 0.21
337 26 0.11
338 85 0.36
339 47 0.20
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (338 bp):
AGGATCGCAGCATGCAGGGGGACCGGACCGATCCCCGGCTTGCGCATTCTACCTCTCTGATCGAC
TGAGCACCCGCACACCTGATTCATGGGTTGGATTAGGCATACGGAGTTCATTCCATGTCTAAGCC
CCAGCCAGACCGAGGGTTGTGATAGCAGGACCGATAGCACGAAGAGGGGGACCAGGCTCATCACC
AGCTTGCACATTATGCCTCTCCGACTGACCTCGCCAACACGCTCTTTCATGGGTTGACTTAGCCA
TACAGAGTTCATCCCCAGTCTAAGCATACAGATTTCATTCCTAGTCTAAGATCGAACCGAACTGA
GGGTTGCGACAGC
Found at i:32763401 original size:156 final size:156
Alignment explanation
Indices: 32763014--32763407 Score: 358
Period size: 156 Copynumber: 2.5 Consensus size: 156
32763004 CCCAGTCTAA
* * * * * * * * *
32763014 GCATACAGATTTCATTCCTAGTCTAAGATCGAACC-GAACTGAGGGTTGCGACAGCAGGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAG-ACCGAGGGTTGTGGCAGTAGGATAGAC
* * ** * *
32763078 AGCATGCAGGGGGACCGGACCGATCCCTGGCTTGCGCATTCTGCCTCTCGGTCGACTGAGCGCCC
65 AGCACGTAGGGGGACCGGACCGATCCCCAGCTTGCGCATTATGCCTCTCGATCGACTGAGCGCCC
*
32763143 GCACGCCTGATTCATGGGTTGGCTTAG
130 GCACGCCTGATTCATGGGTTGACTTAG
* ** * * *
32763170 GCAT-GGGAGTTCATT-CCATGTCT-AGCCCCAGCCAGACCGAGGGTTGT-G-A-TAGCGAGACC
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCAAACCAGACCGAGGGTTGTGGCAGTAG-GATA--
* * * *
32763229 GATAGCACGTAGAGGGGGACCAGG-CC-ATCCCCAGCTTGCGCATTATGCCTCTCCGATTGGCTT
62 GACAGCACGT--AGGGGGACC-GGACCGATCCCCAGCTTGCGCATTATGCCTCT-CGATCGACTG
* * *
32763292 AGCGCCCGCACG-CTCGTTTCGTGGGTTGACTTAT
123 AGCGCCCGCACGCCT-GATTCATGGGTTGACTTAG
32763326 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGTGGCAGTAGGATAGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGTGGCAGTAGGATAGACA
32763391 GCACGTAGGGGGGACCG
66 GCACGTA-GGGGGACCG
32763408 AGCTGATCCC
Statistics
Matches: 186, Mismatches: 35, Indels: 34
0.73 0.14 0.13
Matches are distributed among these distances:
151 2 0.01
152 3 0.02
154 25 0.13
155 38 0.20
156 54 0.29
157 24 0.13
158 32 0.17
159 1 0.01
160 4 0.02
161 3 0.02
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.21
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGTGGCAGTAGGATAGACA
GCACGTAGGGGGACCGGACCGATCCCCAGCTTGCGCATTATGCCTCTCGATCGACTGAGCGCCCG
CACGCCTGATTCATGGGTTGACTTAG
Found at i:32763515 original size:26 final size:26
Alignment explanation
Indices: 32763479--32763531 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
32763469 GTTGGCTTAG
32763479 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
32763505 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
32763531 G
1 G
32763532 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:32764242 original size:26 final size:26
Alignment explanation
Indices: 32764208--32764257 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
32764198 GACTTAGGCT
*
32764208 TACGGAGTTCA-TCCCTAGTCTAAGCA
1 TACGAAGTTCATTCCC-AGTCTAAGCA
32764234 TACGAAGTTCATTCCCAGTCTAAG
1 TACGAAGTTCATTCCCAGTCTAAG
32764258 ATCAGACTTG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 18 0.82
27 4 0.18
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (26 bp):
TACGAAGTTCATTCCCAGTCTAAGCA
Found at i:32766079 original size:502 final size:499
Alignment explanation
Indices: 32765412--32766414 Score: 1241
Period size: 502 Copynumber: 2.0 Consensus size: 499
32765402 GTTGACTTAG
* *
32765412 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGACAGTAAGATCGACA
1 GCATACGGAGTTCATTCCCAATCAAAGATTGGACCAGACCGAGGGTTGCGACAGTAAGATCGACA
* * **
32765477 GCACGCAGGGGGACCGGGTCGATCCCCAGCTTGTGCATTCTGCCACTCCGACCAACTGAGTGCCC
66 GCACGCAAGGGGACCGGGTCGATCCCCAGCTTGCGCATTCTGCCACTCCGACCAACTGAGCACCC
* * * *
32765542 GCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCTATC-GG
131 GCACGCCCATTTCATGGGTTGGCTTAGGAATAGGGAGTTCATTCCATGTCTAAGCCCC-AGCAAG
* * *
32765606 ATAGAGGGTTTTGGCAACGGGACCGACAGCACGTAGAGGGGGA-CTGGGCCGATCCCCGACTTAC
195 ATAGAGGGTTGTGGCAACGGGACCGACAGCACGCAGAAGGGGATC-GGGCCGATCCCCGACTTAC
* * ** *
32765670 GCATTTTGCCTCTTCGACC-AGCTCAGCACCCGCATGCTTGTTTCGTGGGTCAACTTATGCATAC
259 GCATTATGCCTCTTCGACCGA-CTCAGCACCCGCACGCTCATTTCATGGGTCAACTTATGCATAC
* * * *
32765734 GGAGTTCCTTCCCAGTCTAAGATCGGA-CTGCATCGAGGGTTACGACAGTAAGATCGACAGAATG
323 GGAGTTCATTCCCAGTCTAAGATCGGATCAG-ATCGAGGGTTACG-CAGCAAGATCGACAGAACG
* * ** *
32765798 CAGGGGGGGACCAGACT-GATCCTCGACTTGTGCATTCTACCTCTCCGGCCAGCTGAGTGCCTGC
386 CA-GGGGGGACCAG-CTGGATCCCCGACTTGCGCATTCTACCTCAACGGCCAGCTGAGTGCCCGC
* * **
32765862 ACGCTTGTTTTATGGGTTGGCTTAGGCAAACGGAGTTCATTCCATGTCTAA
449 ACACTCGTTGCATGGGTTGGCTTAGGCAAACGGAGTTCATTCCATGTCTAA
* * *
32765913 GCATACGGAGTTCATTCCCAATCAAAGATTGGACC-GTATCGAGGGTTGTGATAGTACA-ATC-A
1 GCATACGGAGTTCATTCCCAATCAAAGATTGGACCAG-ACCGAGGGTTGCGACAGTA-AGATCGA
* ** * **
32765975 GCAGCACGCAAAGGGGATCGGG-CTGATCCCTGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAG
64 -CAGCACGC-AAGGGGACCGGGTC-GATCCCCAGCTTGCGCATTCTGCCACTCCGACCAACTGAG
*
32766039 CACTCGCACGCCCATTTCATGGGTTGGCTTAGGAATAGGGAGTTCATTCCATGTCTAAGCCCCAG
126 CACCCGCACGCCCATTTCATGGGTTGGCTTAGGAATAGGGAGTTCATTCCATGTCTAAGCCCCAG
* * ** * *
32766104 CAAGATTGAGGGTTGTGGCAGCGGGACCGGTAGCACGCAGAAGGGGATCGGGTCGATCCTCGACT
191 CAAGATAGAGGGTTGTGGCAACGGGACCGACAGCACGCAGAAGGGGATCGGGCCGATCCCCGACT
* * * **
32766169 TGCGCATTATGCCTCTTCGGCCGACTCAGCACCTGCACGCTCATTTCATGGGTTGACTTATGCAT
256 TACGCATTATGCCTCTTCGACCGACTCAGCACCCGCACGCTCATTTCATGGGTCAACTTATGCAT
* * * * *
32766234 ACGGAGTTCATTCCCAGTCTAAGATCGGATCAGATTGAGGGTTTCGTAGCAGGATCGACAGCACG
321 ACGGAGTTCATTCCCAGTCTAAGATCGGATCAGATCGAGGGTTACGCAGCAAGATCGACAGAACG
* * * * * * *
32766299 TAGGGGGGACTAGGTGGATCCCCGGCTTGCGGATTCTGCCTCAACGGCCAGCTGAGTGCCCGCGC
386 CAGGGGGGACCAGCTGGATCCCCGACTTGCGCATTCTACCTCAACGGCCAGCTGAGTGCCCGCAC
* *
32766364 ACTCGTTGCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
451 ACTCGTTGCATGGGTTGGCTTAGGCAAACGGAGTTCATTCCATGTCTAA
32766413 GC
1 GC
32766415 CCCAGCCAAA
Statistics
Matches: 426, Mismatches: 66, Indels: 21
0.83 0.13 0.04
Matches are distributed among these distances:
499 1 0.00
500 97 0.23
501 78 0.18
502 246 0.58
503 4 0.01
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (499 bp):
GCATACGGAGTTCATTCCCAATCAAAGATTGGACCAGACCGAGGGTTGCGACAGTAAGATCGACA
GCACGCAAGGGGACCGGGTCGATCCCCAGCTTGCGCATTCTGCCACTCCGACCAACTGAGCACCC
GCACGCCCATTTCATGGGTTGGCTTAGGAATAGGGAGTTCATTCCATGTCTAAGCCCCAGCAAGA
TAGAGGGTTGTGGCAACGGGACCGACAGCACGCAGAAGGGGATCGGGCCGATCCCCGACTTACGC
ATTATGCCTCTTCGACCGACTCAGCACCCGCACGCTCATTTCATGGGTCAACTTATGCATACGGA
GTTCATTCCCAGTCTAAGATCGGATCAGATCGAGGGTTACGCAGCAAGATCGACAGAACGCAGGG
GGGACCAGCTGGATCCCCGACTTGCGCATTCTACCTCAACGGCCAGCTGAGTGCCCGCACACTCG
TTGCATGGGTTGGCTTAGGCAAACGGAGTTCATTCCATGTCTAA
Found at i:32766207 original size:159 final size:159
Alignment explanation
Indices: 32765975--32766563 Score: 539
Period size: 159 Copynumber: 3.7 Consensus size: 159
32765965 AGTACAATCA
* * * * * *
32765975 GCAGCACGCA-AAGGGGATCGGG-CTGATCCCTGGCTTGCGCATTCTGCCTCTCCGACCGGCTGA
1 GCAGCACGCAGAAGGGGATCGGGTC-GATCCCCGGCTTGCGCATTATGCCTCTTCGGCCGACTCA
* * * * *
32766038 GCACTCGCACGCCCATTTCATGGGTTGGCTTAGGAATAGGGAGTTCATTCCATGTCTAAGCCCCA
65 GCACCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCA
*
32766103 GCAAGATTGAGGGTTGTGGCAGCGGGACCG
130 GCAAGATTGAGGGTTGTGGCAGCGGGATCG
* * *
32766133 GTAGCACGCAGAAGGGGATCGGGTCGATCCTCGACTTGCGCATTATGCCTCTTCGGCCGACTCAG
1 GCAGCACGCAGAAGGGGATCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTTCGGCCGACTCAG
* * * **
32766198 CACCTGCACGCTCATTTCATGGGTTGACTTATGCATACGGAGTTCATTCCCA-GTCTAAGATCGG
66 CACCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAAG-CCCC
* * * *
32766262 ATC-AGATTGAGGGTT-TCGTAGCAGGATCG
129 AGCAAGATTGAGGGTTGTGGCAGCGGGATCG
* * * * * * * ** *
32766291 ACAGCACGTAG-GGGGGA-CTAGGTGGATCCCCGGCTTGCGGATTCTGCCTCAACGGCC-AGCTG
1 GCAGCACGCAGAAGGGGATC-GGGTCGATCCCCGGCTTGCGCATTATGCCTCTTCGGCCGA-CTC
** * * * * * *
32766353 AGTGCCCGCGCACTCGTTGCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCC
64 AGCACCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCC
** * * *
32766418 AGCCAA-ACCGAGGGATGTGGCAGTGGGATCA
129 AG-CAAGATTGAGGGTTGTGGCAGCGGGATCG
* * * ** *
32766449 GCAGCATGCAGAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTTCGGTAGGCTCAG
1 GCAGCACGCAGAAGGGGATCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTTCGGCCGACTCAG
** * * *
32766514 TGCCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCC
66 CACCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCC
32766564 CAGTCAAAGA
Statistics
Matches: 339, Mismatches: 79, Indels: 25
0.77 0.18 0.06
Matches are distributed among these distances:
156 7 0.02
157 92 0.27
158 45 0.13
159 187 0.55
160 8 0.02
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (159 bp):
GCAGCACGCAGAAGGGGATCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTTCGGCCGACTCAG
CACCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAG
CAAGATTGAGGGTTGTGGCAGCGGGATCG
Found at i:32766740 original size:26 final size:26
Alignment explanation
Indices: 32766704--32766756 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
32766694 GTTGGCTTAG
32766704 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
32766730 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
32766756 G
1 G
32766757 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:32767466 original size:26 final size:26
Alignment explanation
Indices: 32767436--32767488 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
32767426 GTTGACTTAG
32767436 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
** *
32767462 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
32767488 G
1 G
32767489 ATCGAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:32768824 original size:158 final size:158
Alignment explanation
Indices: 32768522--32768864 Score: 386
Period size: 158 Copynumber: 2.2 Consensus size: 158
32768512 CCCAGTCTAA
* * * * *
32768522 GCATACGAAGTTCAGTCCCAGTCTAGGATCGGATCGGACCGAGGGTTGCGACAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAATCAGACCGAGGGTTGCGACAGCAGGATCGACA
* * * * * * * * *
32768587 ACACGCAAGGGGGACCAGGTCGATCCTCGGCTTGTGCATTATGCCTTTTCGGCTGGCTCAGTGCT
66 ACACGCAAGGGGGACCAGGTCGATCCTCGACTTGCGCATTATACCTCTCCGACCGACTCAGCGCT
* * ** *
32768652 CGTACGCTTGTTTCGTGGGTTGACTTAT
131 CGCACACTCATTTCGTGGGTTGACTTAG
* *
32768680 GCATACGGAGTTCATTCCCAGTCTAAGATCGAATCAGACCGAGGGTTGCGGCAGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAATCAGACCGAGGGTTGCGACAGCAGGATCGACA
* * * * * *
32768745 GCACGC-AGGGAGGATCGGGTCGATCCTCGATTTGCGCATTCTACCTCTCCGACCGACTGAGCGA
66 ACACGCAAGGG-GGACCAGGTCGATCCTCGACTTGCGCATTATACCTCTCCGACCGACTCAGCG-
*
32768809 C-CGCACACTCATTTCGTGGGTTGGCTTAG
129 CTCGCACACTCATTTCGTGGGTTGACTTAG
32768838 GCATACGGAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
32768865 CATACGAAGT
Statistics
Matches: 154, Mismatches: 28, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
157 7 0.05
158 146 0.95
159 1 0.01
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGAATCAGACCGAGGGTTGCGACAGCAGGATCGACA
ACACGCAAGGGGGACCAGGTCGATCCTCGACTTGCGCATTATACCTCTCCGACCGACTCAGCGCT
CGCACACTCATTTCGTGGGTTGACTTAG
Found at i:32768875 original size:26 final size:26
Alignment explanation
Indices: 32768838--32768890 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32768828 GTTGGCTTAG
*
32768838 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
32768864 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
32768890 G
1 G
32768891 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:32770139 original size:159 final size:156
Alignment explanation
Indices: 32769715--32770143 Score: 425
Period size: 159 Copynumber: 2.7 Consensus size: 156
32769705 CGATCCCTGG
* * * * * * *
32769715 CTTGCACATTATAACTCTCCGACCGGCTGAGCTCCCGCACGCTCATTTCGTGGGTTAACTTAGGC
1 CTTGCGCATTATACCTCTCCGACTGGCTGAGCGCCCGCACCCTCGTTTCGTGGGTTGACTTAGGC
* * * * * *
32769780 ATACGGAGTTCATTCCAGTTTAAGATCAGACT-AGATCGAGGGTTACGGTAGCAAGATCGATAGC
66 ATAC-GAGTTCATTCCAGTCTAAGATC-GAATCAGATCGAGGGTTACGATAGCAACACCGACAGC
* **
32769844 ACGTAAGGGGGACTGGGCTGATCCTCGG
129 ACGCAAGGGGGACTGGGCTGATCCTCAA
* * * *
32769872 CTTGCGCATGT-TGCCTCTCCGACTGGCTGAGCGCCCGCATGCC-CGTTTCGCGGGTTGGCTTAG
1 CTTGCGCAT-TATACCTCTCCGACTGGCTGAGCGCCCGCA-CCCTCGTTTCGTGGGTTGACTTAG
** * ** **
32769935 GCATAGCGAGTTCATTCCATGTCTAAGCCCCAGCCAGATCGAGGGTTGTGATAGCAACACCGACA
64 GCATA-CGAGTTCATTCCA-GTCTAAGATCGAATCAGATCGAGGGTTACGATAGCAACACCGACA
*
32770000 GCATGCAGAGGGGGA-TCGGGCTGATCCTCAA
127 GCACGCA-AGGGGGACT-GGGCTGATCCTCAA
* * * *
32770031 CTTGCGCATTATACCTCTTCGGCTGGCTCAGCGCCCGCACCCTCGTTTCTTGGGTTGACTTAGGC
1 CTTGCGCATTATACCTCTCCGACTGGCTGAGCGCCCGCACCCTCGTTTCGTGGGTTGACTTAGGC
* * *
32770096 ATACGAAGTTCATTCCCAGTCTAAGATCGAATCGGACCAAGGGTTACG
66 ATACG-AGTTCATT-CCAGTCTAAGATCGAATCAGATCGAGGGTTACG
32770144 GCAGCAGGGT
Statistics
Matches: 216, Mismatches: 45, Indels: 20
0.77 0.16 0.07
Matches are distributed among these distances:
157 66 0.31
158 45 0.21
159 102 0.47
160 3 0.01
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (156 bp):
CTTGCGCATTATACCTCTCCGACTGGCTGAGCGCCCGCACCCTCGTTTCGTGGGTTGACTTAGGC
ATACGAGTTCATTCCAGTCTAAGATCGAATCAGATCGAGGGTTACGATAGCAACACCGACAGCAC
GCAAGGGGGACTGGGCTGATCCTCAA
Found at i:32770158 original size:159 final size:157
Alignment explanation
Indices: 32769423--32770278 Score: 504
Period size: 158 Copynumber: 5.4 Consensus size: 157
32769413 CTCTCTGGTC
* * * *
32769423 GGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAATCTAA
1 GGCTGAGCGCCCGCACCCTCGTTTCGTGGGTTGACTTAGGCATAC-GAGTTCAT-TCCAGTCTAA
* * * * * * * * * *
32769488 GATC-AAACTGGA-CTGAGGTTTACGGCAGTAGGATCGATAGCACGAAG-GGGGGATCGAGCCGA
64 GATCGAATC-AGATC-GAGGGTTACGGTAGCAAGATCGACAGCACGTAGAGGGGGATCGGGCTGA
* ** * * * *
32769550 TCTTCGGCTTGTGCATTCTGCCTCTCCGACC
127 TCCTCAACTTGCGCATTATACCTCTCCGACT
* * * * * **
32769581 GGTTGAGCACCCGTATCCCT-GTTTCATGGGTTGGCTTAGGCATTGGGAGTTCATTCCATGTCTA
1 GGCTGAGCGCCCGCA-CCCTCGTTTCGTGGGTTGACTTAGGCA-TACGAGTTCATTCCA-GTCTA
** * * * * * ** * * * * *
32769645 AGCCCCAACCGGCT-GAGGGCTGTGGAAGCAGGACCGATAGCACGT-GAAGAGGGA-CTGGG-TC
63 AGATCGAATCAGATCGAGGGTTACGGTAGCAAGATCGACAGCACGTAG-AGGGGGATC-GGGCT-
** * * *
32769706 GATCC-CTGGCTTGCACATTATAACTCTCCGACC
125 GATCCTC-AACTTGCGCATTATACCTCTCCGACT
* * * * *
32769739 GGCTGAGCTCCCGCACGCTCATTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCAGTTTAAG
1 GGCTGAGCGCCCGCACCCTCGTTTCGTGGGTTGACTTAGGCATAC-GAGTTCATTCCAGTCTAAG
* *
32769804 ATCAGACT-AGATCGAGGGTTACGGTAGCAAGATCGATAGCACGTA-AGGGGGA-CTGGGCTGAT
65 ATC-GAATCAGATCGAGGGTTACGGTAGCAAGATCGACAGCACGTAGAGGGGGATC-GGGCTGAT
** *
32769866 CCTCGGCTTGCGCATGT-TGCCTCTCCGACT
128 CCTCAACTTGCGCAT-TATACCTCTCCGACT
* * *
32769896 GGCTGAGCGCCCGCATGCC-CGTTTCGCGGGTTGGCTTAGGCATAGCGAGTTCATTCCATGTCTA
1 GGCTGAGCGCCCGCA-CCCTCGTTTCGTGGGTTGACTTAGGCATA-CGAGTTCATTCCA-GTCTA
** * ** ** * * * * *
32769960 AGCCCCAGCCAGATCGAGGGTTGTGATAGCAACACCGACAGCATGCAGAGGGGGATCGGGCTGAT
63 AGATCGAATCAGATCGAGGGTTACGGTAGCAAGATCGACAGCACGTAGAGGGGGATCGGGCTGAT
* *
32770025 CCTCAACTTGCGCATTATACCTCTTCGGCT
128 CCTCAACTTGCGCATTATACCTCTCCGACT
* *
32770055 GGCTCAGCGCCCGCACCCTCGTTTCTTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
1 GGCTGAGCGCCCGCACCCTCGTTTCGTGGGTTGACTTAGGCATACG-AGTTCATT-CCAGTCTAA
* * * * * * *
32770120 GATCGAATCGGACCAAGGGTTACGGCAGCAGGGTCGACAGCACGTAG-GGGGGATCGGGCCGATC
64 GATCGAATCAGATCGAGGGTTACGGTAGCAAGATCGACAGCACGTAGAGGGGGATCGGGCTGATC
** * * * * *
32770184 C-CTGGCTTACACATTCTGCCTCTTCGA-T
129 CTC-AACTTGCGCATTATACCTCTCCGACT
* * * * * * *
32770212 CGGCTGAGCTCCCACACGCTCATTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCACGTCTA
1 -GGCTGAGCGCCCGCACCCTCGTTTCGTGGGTTGACTTAGGCAT-ACGAGTTCATTCCA-GTCTA
32770277 AG
63 AG
32770279 CATATTGAGT
Statistics
Matches: 542, Mismatches: 124, Indels: 64
0.74 0.17 0.09
Matches are distributed among these distances:
156 1 0.00
157 130 0.24
158 281 0.52
159 126 0.23
160 4 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (157 bp):
GGCTGAGCGCCCGCACCCTCGTTTCGTGGGTTGACTTAGGCATACGAGTTCATTCCAGTCTAAGA
TCGAATCAGATCGAGGGTTACGGTAGCAAGATCGACAGCACGTAGAGGGGGATCGGGCTGATCCT
CAACTTGCGCATTATACCTCTCCGACT
Found at i:32770282 original size:26 final size:26
Alignment explanation
Indices: 32770252--32770304 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
32770242 GTTGGCTTAG
32770252 GCATAAGGAGTTCATT-CCACGTCTAA
1 GCATAAGGAGTTCATTCCCA-GTCTAA
**
32770278 GCATATTGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAGTCTAA
32770304 G
1 G
32770305 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCCAGTCTAA
Found at i:32770651 original size:26 final size:26
Alignment explanation
Indices: 32770619--32770671 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
32770609 GTTGACTTAG
32770619 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
32770645 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
32770671 G
1 G
32770672 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:32771007 original size:159 final size:158
Alignment explanation
Indices: 32770645--32771043 Score: 358
Period size: 159 Copynumber: 2.5 Consensus size: 158
32770635 CCCAATCTAA
* * * * *
32770645 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACC-AGACCAAGGGTTGCGACAGCAGGATCGAC
1 GCATAGGGAGTTCATTCCCAGTCTAAGATCAGTCCGA-ACCAAGGGTTGCGGCAGCAGAATAGAC
* ** ** * * *
32770709 AGCACGTAGGGGGGACTAGGCTGATCCCTGGCTTGCGCATTCTGCCTCTCCGATCAGCTGAGCAC
65 AGCACGCAGGGGGGACTAGGCCAATCCCCCGCTTGCGCATTATGCCTCTCCGACCAGCTCAGCAC
* *
32770774 CCACACGCCCGTTCCGTGGGTTGGCTTAG
130 CCACACGCCCATTCCGTGGGTTGACTTAG
** * * *
32770803 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAGT-CGGACCGAGGGTTGTGGCAGCAGAACTAG
1 GCATAGGGAGTTCATTCCCA-GTCTAAG-ATCAGTCCGAACCAAGGGTTGCGGCAGCAGAA-TAG
* * *
32770866 -CAGCACGCAGAGGGGGA-TCGGGCCAATCCCCCGCTTGCGCATTATGCCTCTTCGGCCAGCTCA
63 ACAGCACGCAG-GGGGGACT-AGGCCAATCCCCCGCTTGCGCATTATGCCTCTCCGACCAGCTCA
* * * * *
32770929 GCGCCCGCACGCTCATTTCGTGGGTTGACTTAT
126 GCACCCACACGCCCATTCCGTGGGTTGACTTAG
** * * * * * *
32770962 TTATATGGAGTTCATTCCCAGTCTAAGATCAGTCCGAAGCTAGGGTTGCAGCAGCAGGATCGACA
1 GCATAGGGAGTTCATTCCCAGTCTAAGATCAGTCCGAACCAAGGGTTGCGGCAGCAGAATAGACA
* *
32771027 GCATGAAGGGTGGGACT
66 GCACGCAGGG-GGGACT
32771044 GGGTTGATCC
Statistics
Matches: 188, Mismatches: 42, Indels: 20
0.75 0.17 0.08
Matches are distributed among these distances:
157 3 0.02
158 59 0.31
159 122 0.65
160 4 0.02
ACGTcount: A:0.21, C:0.28, G:0.30, T:0.21
Consensus pattern (158 bp):
GCATAGGGAGTTCATTCCCAGTCTAAGATCAGTCCGAACCAAGGGTTGCGGCAGCAGAATAGACA
GCACGCAGGGGGGACTAGGCCAATCCCCCGCTTGCGCATTATGCCTCTCCGACCAGCTCAGCACC
CACACGCCCATTCCGTGGGTTGACTTAG
Found at i:32771165 original size:26 final size:26
Alignment explanation
Indices: 32771122--32771174 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
32771112 GTTGGCTTAG
* **
32771122 GCATACGGAGTTCATTCCTTGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
* *
32771148 GCATACGTAGCTCTTTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
32771174 G
1 G
32771175 ATTTTGAGCC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.23, C:0.26, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAGTCTAA
Found at i:32771654 original size:26 final size:26
Alignment explanation
Indices: 32771598--32771654 Score: 62
Period size: 25 Copynumber: 2.2 Consensus size: 26
32771588 CTCTTTCTAA
**
32771598 AAAAATTTTAAAAAATCCTGAACCAT
1 AAAAATTTTAAAAAATCCTGAAAAAT
* *
32771624 AAAAATTTT-GAAAATCGTGAAAAAT
1 AAAAATTTTAAAAAATCCTGAAAAAT
32771649 AGAAAA
1 A-AAAA
32771655 CGGGTCATCT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
25 13 0.50
26 13 0.50
ACGTcount: A:0.58, C:0.09, G:0.09, T:0.25
Consensus pattern (26 bp):
AAAAATTTTAAAAAATCCTGAAAAAT
Found at i:32771890 original size:26 final size:26
Alignment explanation
Indices: 32771854--32771906 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
32771844 GTTGACTTAG
*
32771854 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
32771880 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
32771906 G
1 G
32771907 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:32773284 original size:26 final size:26
Alignment explanation
Indices: 32773237--32773289 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
32773227 GTTGACTTAG
*
32773237 GCATACGGAATTCATCCTCAGTCTAA
1 GCATACGGAATTCATCCGCAGTCTAA
* **
32773263 GCATACGGAGTTCATTGGCAGTCTAA
1 GCATACGGAATTCATCCGCAGTCTAA
32773289 G
1 G
32773290 ATTGGACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAATTCATCCGCAGTCTAA
Found at i:32773437 original size:355 final size:361
Alignment explanation
Indices: 32772795--32773483 Score: 829
Period size: 355 Copynumber: 1.9 Consensus size: 361
32772785 GGGATCGGGC
* * * *
32772795 TGATCCCCGACTTGTGCATTTTGCCTCTCCGGCCGACTGAGCACCCGTACGCTCGTTTCATGGGT
1 TGATCCCCGACTTATGCATTGTGCCTCTCCGGCCGACTGAGCACCCGCACACTCGTTTCATGGGT
* **
32772860 TCACTTAGGCATACTGAATTCATTTTCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
66 TCACTTAGGCATACGGAATTCATCCTCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * *
32772925 GGATCAGATCGAGGGTTACGGCAGTAGAACCAGCAGCAGGATCGACAACACATAGGAGGGGACCG
131 GGACCAGACCGAGGGTTA--GC---AG-A--AGCAGCAGGATCGACAACACATAAGAGGGGACCA
*** * * * * ** * *** *
32772990 GGTCGATCCCTGATTTGCACATTCTACCTCTCCGGCCGGTTGAGTGCCTGTACGCTCATTCTGTG
188 AACCGATCCCCGACTTGCACATTCCACCTCTCCGACCGACTGAGCGCCCACACGCCCATTCTGTG
32773055 GGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACT-GGACCGAGGGTTGTGGCA
253 GGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCC-ACTCGGACCGAGGGTTGTGGCA
32773119 GC-AGGACCGGCAGCGGGATCGACAGCACGCAGATGGGGACCAGGT
317 GCGA-GACCGGCAGCGGGATCGACAGCACGCAGATGGGGACCAGGT
* * ** * *
32773164 TGATCCTCGGCTTATGCATTGTGCCTCTCCGGCCGGTTGAGCACCCGCACACTCTTTTCGTGGGT
1 TGATCCCCGACTTATGCATTGTGCCTCTCCGGCCGACTGAGCACCCGCACACTCGTTTCATGGGT
* ** *
32773229 TGACTTAGGCATACGGAATTCATCCTCA-GTCTAAGCATACGGAGTTCATTGGCAGTCTAAGATT
66 TCACTTAGGCATACGGAATTCATCCTCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
*
32773293 GGACCAGACCGAGGGTTA-C-G-A-CAGCAGGATCGACAGCACATAAGA-GGGACCAAACCGATC
131 GGACCAGACCGAGGGTTAGCAGAAGCAGCAGGATCGACAACACATAAGAGGGGACCAAACCGATC
* * * *
32773353 CCCGGCTTGCGCATTCCGCCTCTCCGACCGACTGAGCGCCCACACGCCCGTT-TCGTGGGTTGGC
196 CCCGACTTGCACATTCCACCTCTCCGACCGACTGAGCGCCCACACGCCCATTCT-GTGGGTTGGC
** *
32773417 TTAGGCATTGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCGAGACC
260 TTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCACTCGGACCGAGGGTTGTGGCAGCGAGACC
32773482 GG
325 GG
32773484 TAGCACGCAG
Statistics
Matches: 274, Mismatches: 43, Indels: 20
0.81 0.13 0.06
Matches are distributed among these distances:
354 3 0.01
355 117 0.43
356 23 0.08
357 1 0.00
361 1 0.00
365 1 0.00
368 49 0.18
369 79 0.29
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.23
Consensus pattern (361 bp):
TGATCCCCGACTTATGCATTGTGCCTCTCCGGCCGACTGAGCACCCGCACACTCGTTTCATGGGT
TCACTTAGGCATACGGAATTCATCCTCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
GGACCAGACCGAGGGTTAGCAGAAGCAGCAGGATCGACAACACATAAGAGGGGACCAAACCGATC
CCCGACTTGCACATTCCACCTCTCCGACCGACTGAGCGCCCACACGCCCATTCTGTGGGTTGGCT
TAGGCATACGGAGTTCATTCCATGTCTAAGCCCCACTCGGACCGAGGGTTGTGGCAGCGAGACCG
GCAGCGGGATCGACAGCACGCAGATGGGGACCAGGT
Found at i:32773737 original size:158 final size:158
Alignment explanation
Indices: 32773263--32773764 Score: 463
Period size: 158 Copynumber: 3.2 Consensus size: 158
32773253 CTCAGTCTAA
* ** *
32773263 GCATACGGAGTTCATTGGCA-GTCTAAGATTGGACC-AGACCGAGGGTTACGACAGCAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCGA-ACCGAGGGTTACGACAGCAAGATCGA
* * * * * * *
32773326 CAGCACATAAGAGGGACCAAACCGATCCCCGGCTTGCGCATTCCGCCTCTCCGACCGACTGAGCG
64 CAGCACACAGGGGGGATCAAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCG
*
32773391 CCCACACGCCCGTTTCGTGGGTTGGCTTAG
129 CCCACACGCTCGTTTCGTGGGTTGGCTTAG
** ** * * ** * * * **
32773421 GCATTGGGAGTTCATTCCATGTCTAAGCCCCAG-TCGGACCGAGGGTTGTGGCAGCGAGACCGGT
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGACCGAACCGAGGGTTACGACAGCAAGATCGAC
* * ** ** * * * * * *
32773485 AGCACGCAGAAGGGGATCGGGCCGATCCCCAACTTGAGCATTATGCCTTTTCGGCCGGCTCAGCG
65 AGCACACAG-GGGGGATCAAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCG
** * * *
32773550 CCTGCTCGCTCATTTCGTGGGTTGACTTAG
129 CCCACACGCTCGTTTCGTGGGTTGGCTTAG
* * * *
32773580 GCATACGAAGTTCATTCCCA-GTCTAAGATCAGACCGAACCGAAGGTTACGATAGTAAGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCGAACCGAGGGTTACGACAGCAAGATCGAC
* * * *
32773644 AGCACACAGGGGGGATCAAGTCAATCCCTGGCTTGCGCATTCTGTCTCTCCGACCGGCTGAGCGC
65 AGCACACAGGGGGGATCAAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGC
*
32773709 CCACACGCTTGTTTCGTGGGTTGGCTTAG
130 CCACACGCTCGTTTCGTGGGTTGGCTTAG
*
32773738 GCATTCGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
32773765 CCCTAGTCGG
Statistics
Matches: 254, Mismatches: 83, Indels: 14
0.72 0.24 0.04
Matches are distributed among these distances:
157 5 0.02
158 135 0.53
159 111 0.44
160 3 0.01
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.22
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACCGAACCGAGGGTTACGACAGCAAGATCGACA
GCACACAGGGGGGATCAAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCC
CACACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:32774335 original size:26 final size:26
Alignment explanation
Indices: 32774299--32774349 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
32774289 TTGACTTAGG
32774299 CATACGGAGTTCATCCCCAGTCTAAC
1 CATACGGAGTTCATCCCCAGTCTAAC
32774325 CATACGGAGTTCATCCCCAGTCTAA
1 CATACGGAGTTCATCCCCAGTCTAA
32774350 GATTAGATCG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.33, G:0.16, T:0.24
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAGTCTAAC
Found at i:32774494 original size:367 final size:365
Alignment explanation
Indices: 32773581--32774508 Score: 898
Period size: 377 Copynumber: 2.5 Consensus size: 365
32773571 TTGACTTAGG
* * * * * * * *
32773581 CATACGAAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAAGGTTACGATAGTAAGATCGACAG
1 CATACGAAGTTCATTCCCAGTCTAAGATTAGATCGGACCGAGGGTTGCGGTGGCAAGATCGACAG
* * * * *
32773646 CACACAGGGGGGATC-AAGTCAATCCCTGGCTTGCGCATTCTGTCTCTCCGACCGGCTGAGCGCC
66 CACACAGGGGGGACCTGA-CCAATCCCTGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCC
* * * * * *
32773710 CACACGCTTGTTTCGTGGGTTGGCTTAGGCATTCGGAGTTCATTCCATGTCTAAGCCCTAGTCGG
130 CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAAGCCGA
* *
32773775 ACTGAGGGTTGTGGCAGCAGGACCGCAGCGGGATCGACAGCATGTAGAGGGGGATCAAGCTAATC
195 ACTGAGGGTTGTGGCAGCAGGACCGCAGCGAGATCGACAGCACGTAGAGGGGGATCAAGCTAATC
* * * * *
32773840 CTCGGTTGTGCATTATGCCTTTCCGATCGACCTCTCCGACCAACAGAGCGCCCGCACGCTCGTTT
260 CTCGCTTGCGCATTATACCTTTCCGATCGACCTCTCCGACCAACAGAGCGCCCGCACACTCATTT
* * * *
32773905 CACGGGTTGGCTTAGGCATATAGAGTTCATTCCAAGTCTAAG
325 -ACGGGTTGACTTAGGCATACAGAGTTCATCCCAAGTCTAAC
* * * *
32773947 CATACGAAGTTCATTCCCA-ACTAAGATTGGATCGGACCAAGGGTTGCGACAGCAAGACCAGCAG
1 CATACGAAGTTCATTCCCAGTCTAAGATTAGATCGGACCGAGGGTTGCG---G--TG----GC--
** * * * * **
32774011 TAAGATCGACAGCACGTAGGGGGGACCTGGCCAATCTCTGGCTTGTGCATTCTACCTCTCTAGCC
55 -AAGATCGACAGCACACAGGGGGGACCTGACCAATCCCTGGCTTGCGCATTCTGCCTCTCCGGCC
** * * *
32774076 GAATGAGCACCCGCA-GTCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
119 GGCTGAGCGCCCGCACG-CTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
* * ** **
32774140 AGCCCAAGCCGAACTGAGGGTTGTGGTAGCAGGATCGGTGACGAGATCGGTAGCACGTAGAGGGG
183 AGCCCAAGCCGAACTGAGGGTTGTGGCAGCAGGACCGCAG-CGAGATCGACAGCACGTAGAGGGG
* * * * * ** * ** * *
32774205 GATCAGGCTGATCC-CTGACTTGCGCATTATACCTTTCTG-GCTGGCCTCTTTGATCGGCTGAGT
247 GATCAAGCTAATCCTC-G-CTTGCGCATTATACCTTTCCGATC-GACCTCTCCGACCAACAGAGC
** * *
32774268 GCCCGTGCACTCATTT-CGTGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAC
309 GCCCGCACACTCATTTACG-GGTTGACTTAGGCATACAGAGTTCATCCCAAGTCTAAC
* * *
32774325 CATACGGAGTTCATCCCCAGTCTAAGATTAGATCGGATCGAGGGTTGCGGTGGCAAGATCGACAG
1 CATACGAAGTTCATTCCCAGTCTAAGATTAGATCGGACCGAGGGTTGCGGTGGCAAGATCGACAG
* * * * *
32774390 CACACAGGGGGGACCTGACCGATCCCTGGCTTACGCATTCTGCCTCTCCGGTCGGCTGAGTGCCT
66 CACACAGGGGGGACCTGACCAATCCCTGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCC
* * *
32774455 GGACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCCA-GTCTAAG
131 GCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAG
32774509 ATCAGACCGA
Statistics
Matches: 443, Mismatches: 97, Indels: 43
0.76 0.17 0.07
Matches are distributed among these distances:
365 21 0.05
366 19 0.04
367 103 0.23
368 4 0.01
370 2 0.00
374 2 0.00
376 2 0.00
377 140 0.32
378 83 0.19
379 67 0.15
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.24
Consensus pattern (365 bp):
CATACGAAGTTCATTCCCAGTCTAAGATTAGATCGGACCGAGGGTTGCGGTGGCAAGATCGACAG
CACACAGGGGGGACCTGACCAATCCCTGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCC
GCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAAGCCGAA
CTGAGGGTTGTGGCAGCAGGACCGCAGCGAGATCGACAGCACGTAGAGGGGGATCAAGCTAATCC
TCGCTTGCGCATTATACCTTTCCGATCGACCTCTCCGACCAACAGAGCGCCCGCACACTCATTTA
CGGGTTGACTTAGGCATACAGAGTTCATCCCAAGTCTAAC
Found at i:32774882 original size:26 final size:26
Alignment explanation
Indices: 32774852--32774904 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
32774842 GTTGGCTTAG
32774852 GCATACGGAGTTCATTCC-ACGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
32774878 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
32774904 G
1 G
32774905 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:32775252 original size:26 final size:26
Alignment explanation
Indices: 32775216--32775266 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
32775206 GTTGACTTAG
32775216 GCATACGGAGTTCATCCCCAGTCTAT
1 GCATACGGAGTTCATCCCCAGTCTAT
*
32775242 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATCCCCAGTCTA
32775267 AGATCAGACC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAT
Found at i:32776206 original size:26 final size:26
Alignment explanation
Indices: 32776156--32776206 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
32776146 TAGCTTAGGT
* *
32776156 ATACGGAGTTCATTCCATGTTTAAGC
1 ATACGAAGTTCATTCCATGTCTAAGC
32776182 ATACGAAGTTCATTCCCA-GTCTAAG
1 ATACGAAGTTCATT-CCATGTCTAAG
32776207 ATTTTGAGCC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (26 bp):
ATACGAAGTTCATTCCATGTCTAAGC
Found at i:32776912 original size:26 final size:26
Alignment explanation
Indices: 32776876--32776928 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
32776866 GTTGACTTAG
32776876 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
32776902 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
32776928 G
1 G
32776929 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:32777405 original size:26 final size:26
Alignment explanation
Indices: 32777376--32777428 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
32777366 GTTGGCTTAG
32777376 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
32777402 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
32777428 G
1 G
32777429 ATCAGATCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:32777603 original size:26 final size:26
Alignment explanation
Indices: 32777573--32777625 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
32777563 GTTGGCTTAG
32777573 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* * *
32777599 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
32777625 G
1 G
32777626 ATCGAACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:32778102 original size:26 final size:26
Alignment explanation
Indices: 32778073--32778125 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
32778063 GTTGGCTTAG
32778073 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
32778099 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
32778125 G
1 G
32778126 ATAAGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:32778162 original size:697 final size:697
Alignment explanation
Indices: 32776863--32778297 Score: 2471
Period size: 697 Copynumber: 2.1 Consensus size: 697
32776853 ACTCGTTTTG
* *
32776863 TGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAA
1 TGGGTTGGCTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAA
* * * *
32776928 GATCGAACCGGACTAAGGGTTGCGACAGCAGGATCGGCTGCATGCAGTGAGGATCGAGCCGATCC
66 GATCGAACCGGACCAAGGGTTACGACAGCAGGATCAGCTGCATACAGTGAGGATCGAGCCGATCC
* *
32776993 CTGGCTTGCGCATTCTGCCTCTCCGGTCGGCTAAGCGCTCAGACGCCCGTTTCGTGGGTTGCCTT
131 CTGGCTTGCGCATTCTGCCTCTCCGGTCAGCTAAGCGCTCAGACGCCCGTTTCATGGGTTGCCTT
*
32777058 AGGCATAGGGAGTTCATTCCACATCTAAGCCCCAGTCAGACCAAGGGCTGTGGCCACAGGACCGG
196 AGGCATAGGGAGTTCATTCCACATCTAAGCCCCAGCCAGACCAAGGGCTGTGGCCACAGGACCGG
*
32777123 CAGCATGCAGAGGGGGACCGGGCTGATCCCCATCTTACGCATTATGCCTCTTCGGTTGGCTCAGC
261 CAGCATGCAGAGGGGGACCGGGCTGATCCCCATCTTACGCATTATGCCTCTTCGGCTGGCTCAGC
* *
32777188 ACCCGCACGCTCGTTTTGTGAGATGACTTAGGCATACGGAGTTTATTCCCAGTCTAAGATTGGAC
326 ACCCGCACGCTCGTTTCGTGAGATGAATTAGGCATACGGAGTTTATTCCCAGTCTAAGATTGGAC
*
32777253 CAGACCGAGGGTTACGACAGCAAGATGACAGCATGCAGGGGGGACCAGGCCGATCCCCGGCTTAC
391 CAGACCGAGGGTTACAACAGCAAGATGACAGCATGCAGGGGGGACCAGGCCGATCCCCGGCTTAC
*
32777318 GCATTCTGCCTCTTTGGTCGGCTGAGTGCCCGTACGCTCATTTCGTGGGTTGGCTTAGGCATACG
456 GCATTCTGCCTCTTTGGTCGACTGAGTGCCCGTACGCTCATTTCGTGGGTTGGCTTAGGCATACG
* *
32777383 GAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGATCGAGGGT
521 GAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATAAGATCAGACCGAGGGT
* * * * *
32777448 TGTGGTAGTAGGACCAGTAGCAGGATCTATAGCACGTAGGGAGGGACCGGATCGATCCTCGACTT
586 TGTGGTAGCAAGACCAGTAGCAGGATCTACAGCACGCAGGGAAGGACCGGATCGATCCTCGACTT
*
32777513 ATGCATTCTGCCTCTCCAGTTGGCTCAGCACCCGCACGCTCATTTCA
651 ATGCATTCTGCCTCTCCAGTCGGCTCAGCACCCGCACGCTCATTTCA
32777560 TGGGTTGGCTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAA
1 TGGGTTGGCTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAA
*
32777625 GATCGAACCGGACCAAGGGTTACGACAGCAGGATCAGCTGCATACAGTGGGGATCGAGCCGATCC
66 GATCGAACCGGACCAAGGGTTACGACAGCAGGATCAGCTGCATACAGTGAGGATCGAGCCGATCC
* *
32777690 CTGGCTTGCGCATTCTGCCTCTCCGGTCAGCTAAGTGCTC-GCACGCCGGTTTCATGGGTTGCCT
131 CTGGCTTGCGCATTCTGCCTCTCCGGTCAGCTAAGCGCTCAG-ACGCCCGTTTCATGGGTTGCCT
* * * *
32777754 TAGGCATAGGGAGTTCATTCCACGTCTAAGCCCCAGCCGGACTAAGGGTTGTGGCCACAGGACCG
195 TAGGCATAGGGAGTTCATTCCACATCTAAGCCCCAGCCAGACCAAGGGCTGTGGCCACAGGACCG
*
32777819 GCAGCATGCAGAGGGGGACCGGG-TCGATCCTCATCTTACGCATTATGCCTCTTCGGCTGGCTCA
260 GCAGCATGCAGAGGGGGACCGGGCT-GATCCCCATCTTACGCATTATGCCTCTTCGGCTGGCTCA
*
32777883 GCACCCGCACGCTCGTTTCGTGGGATGAATTAGGCATACGGAGTTTATTCCCAGTCTAAGATTGG
324 GCACCCGCACGCTCGTTTCGTGAGATGAATTAGGCATACGGAGTTTATTCCCAGTCTAAGATTGG
* *
32777948 ACCAGACCGAGGGTTGCAACAGCAAGATGACAGCATGCAGGGGGGACCAGGTCGATCCCCGGCTT
389 ACCAGACCGAGGGTTACAACAGCAAGATGACAGCATGCAGGGGGGACCAGGCCGATCCCCGGCTT
* *
32778013 GCGCATTCTGCCTCTTTGGTCGACTGAGTGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATA
454 ACGCATTCTGCCTCTTTGGTCGACTGAGTGCCCGTACGCTCATTTCGTGGGTTGGCTTAGGCATA
* *
32778078 CGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATAAGATCGGACCGAGG
519 CGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATAAGATCAGACCGAGG
32778143 GTTGTGGTAGCAAGACCAGTAGCAGGATCTACAGCACGCAGGGAAGGACCGGATCGATCCTCGAC
584 GTTGTGGTAGCAAGACCAGTAGCAGGATCTACAGCACGCAGGGAAGGACCGGATCGATCCTCGAC
*
32778208 TTATGCATTCTGCCTCTCCAGTCGGCTCAGCACCCGCACGCTCGTTTCA
649 TTATGCATTCTGCCTCTCCAGTCGGCTCAGCACCCGCACGCTCATTTCA
*
32778257 TGGGTTGGCTTAGGCATACGAAGTTCAT-TCCATGTCTAAGC
1 TGGGTTGGCTTAGGCATACGAAGTTCATCCCCA-GTCTAAGC
32778298 CCCAGTCGGA
Statistics
Matches: 696, Mismatches: 39, Indels: 6
0.94 0.05 0.01
Matches are distributed among these distances:
696 5 0.01
697 691 0.99
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (697 bp):
TGGGTTGGCTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAA
GATCGAACCGGACCAAGGGTTACGACAGCAGGATCAGCTGCATACAGTGAGGATCGAGCCGATCC
CTGGCTTGCGCATTCTGCCTCTCCGGTCAGCTAAGCGCTCAGACGCCCGTTTCATGGGTTGCCTT
AGGCATAGGGAGTTCATTCCACATCTAAGCCCCAGCCAGACCAAGGGCTGTGGCCACAGGACCGG
CAGCATGCAGAGGGGGACCGGGCTGATCCCCATCTTACGCATTATGCCTCTTCGGCTGGCTCAGC
ACCCGCACGCTCGTTTCGTGAGATGAATTAGGCATACGGAGTTTATTCCCAGTCTAAGATTGGAC
CAGACCGAGGGTTACAACAGCAAGATGACAGCATGCAGGGGGGACCAGGCCGATCCCCGGCTTAC
GCATTCTGCCTCTTTGGTCGACTGAGTGCCCGTACGCTCATTTCGTGGGTTGGCTTAGGCATACG
GAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATAAGATCAGACCGAGGGT
TGTGGTAGCAAGACCAGTAGCAGGATCTACAGCACGCAGGGAAGGACCGGATCGATCCTCGACTT
ATGCATTCTGCCTCTCCAGTCGGCTCAGCACCCGCACGCTCATTTCA
Found at i:32778485 original size:26 final size:26
Alignment explanation
Indices: 32778455--32778505 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
32778445 TTGACTTAGG
32778455 CATACGAAGTTCATCCCCAGTCTAAA
1 CATACGAAGTTCATCCCCAGTCTAAA
* *
32778481 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGAAGTTCATCCCCAGTCTAA
32778506 GATCGGACTG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.25
Consensus pattern (26 bp):
CATACGAAGTTCATCCCCAGTCTAAA
Found at i:32779030 original size:10 final size:11
Alignment explanation
Indices: 32779005--32779029 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
32778995 TTCCCAGTCT
32779005 AAAATTTTAAA
1 AAAATTTTAAA
32779016 AAAATTTTAAA
1 AAAATTTTAAA
32779027 AAA
1 AAA
32779030 TCTCGAACCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (11 bp):
AAAATTTTAAA
Found at i:32780795 original size:26 final size:26
Alignment explanation
Indices: 32780759--32780811 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
32780749 CTTGGCTTAG
32780759 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
32780785 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
32780811 G
1 G
32780812 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:32781484 original size:26 final size:26
Alignment explanation
Indices: 32781455--32781507 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32781445 GTTGACTGTG
32781455 GCATACGGAGTTCA-TCCTCAGTCTAA
1 GCATACGGAGTTCATTCCT-AGTCTAA
*
32781481 GCATACTGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
32781507 G
1 G
32781508 ATCAAACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:32782674 original size:159 final size:157
Alignment explanation
Indices: 32782258--32782707 Score: 424
Period size: 159 Copynumber: 2.8 Consensus size: 157
32782248 AACTCCGTAT
* * * * *
32782258 GCTTAGACATTGAATGAACTCCGTATGCCTAAGCTAACCCACGAAAAGAGCGTGCGGG-ATTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGAGCGGGCACTCAG
* * * * * *
32782322 TCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGATCCTGTCCCCCCTGTGTGCTGA-CGATC
66 CCGGTCGAAGAGGCAAAATGCGCAAGCCGGGGATTGA-CTTGTCCCCCCTGCGTGCT-ATCGATC
32782386 CTGCTACAACAACCCTCAGTCTGATCCAA
129 CTGCTACAACAACCCTCAGTCTGATCCAA
* * * * * * *
32782415 TCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAAACCATGAAACGAGCGTA-CAGGCACTG
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCG-AGCGGGCACTC
* * * * *** * * *
32782478 AGCGGGCCAAAGAGGCATAATGCGCAAGCCAAAGATTGGCTTGATCCCCCTCTGCGTGCTATTGG
64 AGCCGGTCGAAGAGGCAAAATGCGCAAGCCGGGGATTGACTTG-TCCCCC-CTGCGTGCTATCGA
* * * * *
32782543 TCTTGCTACCACAACCCTCGGTCTGA-CTAGG
127 TCCTGCTACAACAACCCTCAGTCTGATCCA-A
* *
32782574 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGAGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGAGCGGGCACTCAG
* * ** * *
32782639 CCAGTCGAAGAGGCAAAATGCACAAATCGGGGATTGACTCGGTCCCCCCTACGTGCTATCGATCC
66 CCGGTCGAAGAGGCAAAATGCGCAAGCCGGGGATTGACT-TGTCCCCCCTGCGTGCTATCGATCC
32782704 TGCT
130 TGCT
32782708 GTCGTAATGC
Statistics
Matches: 225, Mismatches: 58, Indels: 19
0.75 0.19 0.06
Matches are distributed among these distances:
156 1 0.00
157 48 0.21
158 57 0.25
159 117 0.52
160 2 0.01
ACGTcount: A:0.26, C:0.28, G:0.26, T:0.20
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGAGCGGGCACTCAG
CCGGTCGAAGAGGCAAAATGCGCAAGCCGGGGATTGACTTGTCCCCCCTGCGTGCTATCGATCCT
GCTACAACAACCCTCAGTCTGATCCAA
Found at i:32783137 original size:26 final size:26
Alignment explanation
Indices: 32783101--32783153 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
32783091 CCGATCCGAT
*
32783101 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
32783127 CTTAGATTGGGGATTAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
32783153 C
1 C
32783154 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:32783874 original size:26 final size:26
Alignment explanation
Indices: 32783818--32783868 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
32783808 CCATGGCTCA
32783818 AAAT-CTTAGACTGGGAATGAACTCC
1 AAATGCTTAGACTGGGAATGAACTCC
*
32783843 AAATGCTTAGACAT-GGAATGATCTCC
1 AAATGCTTAGAC-TGGGAATGAACTCC
32783869 GTATGCCGAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
25 4 0.17
26 18 0.78
27 1 0.04
ACGTcount: A:0.35, C:0.20, G:0.20, T:0.25
Consensus pattern (26 bp):
AAATGCTTAGACTGGGAATGAACTCC
Found at i:32784366 original size:26 final size:26
Alignment explanation
Indices: 32784323--32784375 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
32784313 CTGGTCCAAT
*
32784323 CTTAGACTGGGAAGGAACTTCGTATG
1 CTTAGACTGGGAAGGAACTCCGTATG
*
32784349 CTTAGACT-GGAGATGAACTCCGTATG
1 CTTAGACTGGGA-AGGAACTCCGTATG
32784375 C
1 C
32784376 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 3 0.12
26 21 0.88
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAAGGAACTCCGTATG
Found at i:32786150 original size:26 final size:26
Alignment explanation
Indices: 32786099--32786151 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
32786089 CTGATCCGAT
*
32786099 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
32786125 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
32786151 C
1 C
32786152 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:32786628 original size:26 final size:26
Alignment explanation
Indices: 32786599--32786649 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
32786589 CCGATCCGAT
32786599 CTTAGACTAGGAATGAACTCCGTATA
1 CTTAGACTAGGAATGAACTCCGTATA
* * * *
32786625 CTTAGGCTGGGGATGAATTCCGTAT
1 CTTAGACTAGGAATGAACTCCGTAT
32786650 GCCTAAGTCA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATA
Found at i:32787681 original size:26 final size:26
Alignment explanation
Indices: 32787652--32787702 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
32787642 TAGTCTGATC
32787652 TTAGACTGCGAATGAACTCTGTATGG
1 TTAGACTGCGAATGAACTCTGTATGG
* * *
32787678 TTAGACTGGGGATGAACTTTGTATG
1 TTAGACTGCGAATGAACTCTGTATG
32787703 CCTAAGTCAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.12, G:0.29, T:0.33
Consensus pattern (26 bp):
TTAGACTGCGAATGAACTCTGTATGG
Found at i:32788990 original size:159 final size:159
Alignment explanation
Indices: 32788698--32788994 Score: 423
Period size: 159 Copynumber: 1.9 Consensus size: 159
32788688 CCAGTCCTGC
**
32788698 TACCACAACCCTCGGTCCGGTTGGGGCTTAGACATGGAATGAACTATGTATGCCTAAGCCAACCC
1 TACCACAACCCTCGGTCCGGTTGGGGCTTAGACATGGAATGAACTACCTATGCCTAAGCCAACCC
* * * * * * * * * *
32788763 ATGAAATGAGCGTGCGGGCATTGAGTCGATCGGAGAGGCATAATGCGCAAGCCGGGGATCGGCTC
66 ATGAAATGAGCATGCGGGCACTCAGCCAACCGAAGAGGCAGAATGCACAAGCCGGGGATCGGCCC
32788828 GATCCCCCTCTGTGTGCTATCGGTCCCGT
131 GATCCCCCTCTGTGTGCTATCGGTCCCGT
* *
32788857 TACCACAACCCTCGGTCCGGTTGGGGCTTAGACATGGAATGGACTCCCTATGCCTAAGCCAACCC
1 TACCACAACCCTCGGTCCGGTTGGGGCTTAGACATGGAATGAACTACCTATGCCTAAGCCAACCC
* ** * *
32788922 ATGAAATGGGCATGCGGGTGCTCAGCCAACCGAAGATGCAGAATGCACAAGTCGGGGATCGGCCC
66 ATGAAATGAGCATGCGGGCACTCAGCCAACCGAAGAGGCAGAATGCACAAGCCGGGGATCGGCCC
32788987 GATCCCCC
131 GATCCCCC
32788995 CATGTGCTGT
Statistics
Matches: 119, Mismatches: 19, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
159 119 1.00
ACGTcount: A:0.23, C:0.29, G:0.29, T:0.19
Consensus pattern (159 bp):
TACCACAACCCTCGGTCCGGTTGGGGCTTAGACATGGAATGAACTACCTATGCCTAAGCCAACCC
ATGAAATGAGCATGCGGGCACTCAGCCAACCGAAGAGGCAGAATGCACAAGCCGGGGATCGGCCC
GATCCCCCTCTGTGTGCTATCGGTCCCGT
Found at i:32789069 original size:26 final size:26
Alignment explanation
Indices: 32789040--32789092 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
32789030 CCTGTCTGAT
32789040 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
* * *
32789066 CTTAGATTGGGGATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
32789092 C
1 C
32789093 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.13, G:0.28, T:0.34
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:32790054 original size:26 final size:26
Alignment explanation
Indices: 32790025--32790077 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
32790015 CCGGTCTGAT
*
32790025 CTTAGACTAGGAGGGAACTCTGTATG
1 CTTAGACTAGGAAGGAACTCTGTATG
* *
32790051 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAAGGAACTCTGTATG
32790077 C
1 C
32790078 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAAGGAACTCTGTATG
Found at i:32790345 original size:159 final size:159
Alignment explanation
Indices: 32790052--32790346 Score: 378
Period size: 159 Copynumber: 1.9 Consensus size: 159
32790042 CTCTGTATGC
** * * *
32790052 TTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGCGCGGGTGCTGAGCC
1 TTAGACTGGGAATGAACTCCCTAAGCCTAAGCCAACCCACGAAACGAGCGCGCGGGTGCTCAGCC
* * * * * *
32790117 GACCGGAGAGGCATAATGCGTAAGTCGGGGATCGGCCCGGTCCCCCTCTGCATGCTGCCGATCCC
66 GACCGAAGAGGCAGAATACGTAAGTCGGGGACCGGCCCGGTCCCCCTCTGCAAGCTACCGATCCC
32790182 GCTGCCACAACCCTCAGTCCGGTTGGGGG
131 GCTGCCACAACCCTCAGTCCGGTTGGGGG
* * * *
32790211 TTAGACAT-GGAATGAACTCCCTAAGCCTAAGCCAACCCATGAAATGGGCGTGCGGGTGCTCAGC
1 TTAGAC-TGGGAATGAACTCCCTAAGCCTAAGCCAACCCACGAAACGAGCGCGCGGGTGCTCAGC
* * * *
32790275 CGGCCGAAGAGGCAGAATACTTAAAGTCGGGGACCGGCCCGGTCCCCC-CTGTAAGCTATCGATC
65 CGACCGAAGAGGCAGAATACGT-AAGTCGGGGACCGGCCCGGTCCCCCTCTGCAAGCTACCGATC
*
32790339 CTGCTGCC
129 CCGCTGCC
32790347 GCAATGCTCG
Statistics
Matches: 114, Mismatches: 20, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
159 89 0.78
160 25 0.22
ACGTcount: A:0.22, C:0.31, G:0.30, T:0.18
Consensus pattern (159 bp):
TTAGACTGGGAATGAACTCCCTAAGCCTAAGCCAACCCACGAAACGAGCGCGCGGGTGCTCAGCC
GACCGAAGAGGCAGAATACGTAAGTCGGGGACCGGCCCGGTCCCCCTCTGCAAGCTACCGATCCC
GCTGCCACAACCCTCAGTCCGGTTGGGGG
Found at i:32790374 original size:159 final size:158
Alignment explanation
Indices: 32790050--32790380 Score: 353
Period size: 159 Copynumber: 2.1 Consensus size: 158
32790040 AACTCTGTAT
** * * *
32790050 GCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGCGCGGGTGCTGAG
1 GCTTAGACT-GGAATGAACTCCCTAAGCCTAAGCCAACCCACGAAACGAGCGCGCGGGTGCTCAG
* * * * * *
32790115 CCGACCGGAGAGGCATAATGCGTAAGTCGGGGATCGGCCCGGTCCCCCTCTGCATGCTGCCGATC
65 CCGACCGAAGAGGCAGAATACGTAAGTCGGGGACCGGCCCGGTCCCCCTCTGCAAGCTACCGATC
* *
32790180 CCGCTGCCACAACCCTCAGTCCGGTTGGG
130 CCGCTGCCACAACCCTCAGTCCGATTGGA
* * * * *
32790209 GGTTAGACATGGAATGAACTCCCTAAGCCTAAGCCAACCCATGAAATGGGCGTGCGGGTGCTCAG
1 GCTTAGAC-TGGAATGAACTCCCTAAGCCTAAGCCAACCCACGAAACGAGCGCGCGGGTGCTCAG
* * * *
32790274 CCGGCCGAAGAGGCAGAATACTTAAAGTCGGGGACCGGCCCGGTCCCCC-CTGTAAGCTATCGAT
65 CCGACCGAAGAGGCAGAATACGT-AAGTCGGGGACCGGCCCGGTCCCCCTCTGCAAGCTACCGAT
* * **
32790338 CCTGCTGCCGCAATGCTC-GATCCGATCT-GA
129 CCCGCTGCCACAACCCTCAG-TCCGAT-TGGA
*
32790368 TCTTAGACTGGAA
1 GCTTAGACTGGAA
32790381 ATAAACTTTG
Statistics
Matches: 140, Mismatches: 28, Indels: 9
0.79 0.16 0.05
Matches are distributed among these distances:
158 6 0.04
159 108 0.77
160 26 0.19
ACGTcount: A:0.22, C:0.30, G:0.29, T:0.18
Consensus pattern (158 bp):
GCTTAGACTGGAATGAACTCCCTAAGCCTAAGCCAACCCACGAAACGAGCGCGCGGGTGCTCAGC
CGACCGAAGAGGCAGAATACGTAAGTCGGGGACCGGCCCGGTCCCCCTCTGCAAGCTACCGATCC
CGCTGCCACAACCCTCAGTCCGATTGGA
Found at i:32790693 original size:15 final size:17
Alignment explanation
Indices: 32790675--32790707 Score: 52
Period size: 15 Copynumber: 2.1 Consensus size: 17
32790665 CTGGTCGAGA
32790675 TTTTTTA-AAAGT-TTT
1 TTTTTTAGAAAGTGTTT
32790690 TTTTTTAGAAAGTGTTT
1 TTTTTTAGAAAGTGTTT
32790707 T
1 T
32790708 GTCCCNNNNN
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
16 5 0.31
17 4 0.25
ACGTcount: A:0.24, C:0.00, G:0.12, T:0.64
Consensus pattern (17 bp):
TTTTTTAGAAAGTGTTT
Found at i:32792825 original size:26 final size:26
Alignment explanation
Indices: 32792774--32792826 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
32792764 CTGATCCAAT
*
32792774 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTACGTATG
32792800 CTTAGACAT-GGAATGAAC-ACGATATG
1 CTTAGAC-TGGGAATGAACTACG-TATG
32792826 C
1 C
32792827 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 2 0.08
26 21 0.88
27 1 0.04
ACGTcount: A:0.32, C:0.19, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:32799138 original size:26 final size:26
Alignment explanation
Indices: 32799088--32799140 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
32799078 CCGATCCGAT
**
32799088 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCAGTATG
*
32799114 CTTAGACTGGGGATGAACTCAGTATG
1 CTTAGACTGGGAATGAACTCAGTATG
32799140 C
1 C
32799141 CTAAGTGAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCAGTATG
Found at i:32800776 original size:159 final size:155
Alignment explanation
Indices: 32800484--32801015 Score: 516
Period size: 159 Copynumber: 3.4 Consensus size: 155
32800474 AGTCCTGTTG
* ** ***
32800484 CCACAACCCTCGATCGGGCTAGGGCTTAGACATGGAATGAACTTTGTATGCCTAAGCCAACCCAT
1 CCACAACCCTCGGTCTAGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAT
* * * * *
32800549 GAAACGAGCGTGTGGGCACTGAGTCGGCCGGAGAGGCATAATGCACAAGTCGGGGATCGGCTCGG
66 GAAACGAGCGTGCGGGCGCTGAGTCGGCCGGAGAGGCATAATGCACAAG-CTGGGATCGGCCCAG
32800614 TCCCCCTCTGCGTGCTGCCGGTCTCGCCA
130 TCCCCCTCTGCGTGCTG-C-GTCTCG-CA
* * *
32800643 CCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
1 CCACAACCCTCGGTCTAGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAT
* * * * *
32800708 GAAACGAGCGTGCGAGCGCTCAGTCGACTGGAGAGGCAGAATGCACAAGCCTGGGATCGGCCCAG
66 GAAACGAGCGTGCGGGCGCTGAGTCGGCCGGAGAGGCATAATGCACAAG-CTGGGATCGGCCCAG
32800773 TCCCCC-CTGC--G-T--G-CT-G--
130 TCCCCCTCTGCGTGCTGCGTCTCGCA
* * * * ** * *
32800789 CCACAA-CCTCGGTCCAACTGGGGCTTAGACATGGAATGAATTCTGTATTCCTAAGACAACCCAT
1 CCACAACCCTCGGTCTAGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAT
* * * * *
32800853 GAAACGAGCGTGCGGGCGATGAG-CAGGCCGGAGAGGTATAATGCACAAGTTGGGGATCGACCTA
66 GAAACGAGCGTGCGGGCGCTGAGTC-GGCCGGAGAGGCATAATGCACAAGCT-GGGATCGGCCCA
* ** *
32800917 ATCCCTTTCTGCGTGCTGTCAATC-CTGCTA
129 GTCCCCCTCTGCGTGCTG-C-GTCTC-GC-A
* *
32800947 CCACAACCCTCGGT-TCAGCTAGGGCTTAGACATGGAATGAACACCCTATGCCTAAGCTAACCCA
1 CCACAACCCTCGGTCT-AGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
32801011 TGAAA
65 TGAAA
32801016 TAGGTGTGCA
Statistics
Matches: 304, Mismatches: 51, Indels: 36
0.78 0.13 0.09
Matches are distributed among these distances:
144 2 0.01
145 103 0.34
146 10 0.03
148 1 0.00
149 2 0.01
150 2 0.01
151 1 0.00
154 1 0.00
155 2 0.01
156 1 0.00
158 10 0.03
159 169 0.56
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.19
Consensus pattern (155 bp):
CCACAACCCTCGGTCTAGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAT
GAAACGAGCGTGCGGGCGCTGAGTCGGCCGGAGAGGCATAATGCACAAGCTGGGATCGGCCCAGT
CCCCCTCTGCGTGCTGCGTCTCGCA
Found at i:32801890 original size:26 final size:26
Alignment explanation
Indices: 32801852--32801904 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32801842 GGCTCAAAAT
*
32801852 CTTAGACTGGGAATGAATTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
32801878 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
32801904 C
1 C
32801905 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:32802404 original size:26 final size:26
Alignment explanation
Indices: 32802352--32802404 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
32802342 TCAATCCGAT
*
32802352 CTTAGACTGGGAATGAACTCTGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
* * *
32802378 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
32802404 C
1 C
32802405 CGAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:32802749 original size:26 final size:26
Alignment explanation
Indices: 32802720--32802772 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
32802710 CTGGTCCAAT
**
32802720 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACAAGGAATGAACTCCATATG
*
32802746 CTTAGACAAGGAATGAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCATATG
32802772 C
1 C
32802773 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.21, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACAAGGAATGAACTCCATATG
Found at i:32802798 original size:184 final size:184
Alignment explanation
Indices: 32802561--32803128 Score: 645
Period size: 197 Copynumber: 3.0 Consensus size: 184
32802551 TCCGGCTGGG
* ** * *
32802561 GCTTAGATATGGAATGAACTCTATATGCCTAAGCCAACGCACGAAATGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* * * *
32802626 CCGGTCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCTCGGTCCCCCCTGCGTGCTGTCAATCC
66 CCGGTCGGAGAGGCAGAATGCGCAAG-CGGGGATCGACCCGGTCCCCCCTGCGTGCTATCGATCC
* * *
32802691 TGCTGTC-GCAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCATAT
130 TGCTGTCTGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCATAT
* * *
32802745 GCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* * * * *
32802810 CCGGTCGGAGAGGCAGAATGCGTAAGCCGAGGATCGACCCGATCCCTCCCTACGTGCTACCGATC
66 CCGGTCGGAGAGGCAGAATGCGCAAG-CGGGGATCGACCCGGTCCC-CCCTGCGTGCTATCGAT-
* ** *
32802875 CTGCTGCTGGTCCTGCTATCATAACCCTCAGTCCGATTTGATCTTAGACTGGGAATGAACTCCGT
128 C--CTGCT-GT-CTG----C--AACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCAT
32802940 AT
183 AT
* * * * *
32802942 GCTTAGACATGGAATGAACTCCGTATACCTAAGCCAGCCTACGAAATGAGCATGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* * * *
32803007 CCAGCCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCTGTCCCCCGTTGCGTGCTATCGATC
66 CCGGTCGGAGAGGCAGAATGCGCAAGC-GGGGATCGACCCGGTCCCCC-CTGCGTGCTATCGATC
* * * *
32803072 CTACT-ACTGTAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCATAT
129 CTGCTGTCTGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCATAT
32803127 GC
1 GC
32803129 CTAAGTCAAA
Statistics
Matches: 319, Mismatches: 50, Indels: 29
0.80 0.13 0.07
Matches are distributed among these distances:
184 97 0.30
185 55 0.17
186 1 0.00
188 5 0.02
189 2 0.01
190 1 0.00
191 4 0.01
194 4 0.01
195 1 0.00
196 4 0.01
197 145 0.45
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
CCGGTCGGAGAGGCAGAATGCGCAAGCGGGGATCGACCCGGTCCCCCCTGCGTGCTATCGATCCT
GCTGTCTGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCATAT
Found at i:32802946 original size:26 final size:26
Alignment explanation
Indices: 32802917--32802967 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
32802907 CCGATTTGAT
32802917 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
32802943 CTTAGACATGGAATGAACTCCGTAT
1 CTTAGACATGGAATGAACTCCGTAT
32802968 ACCTAAGCCA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:32803442 original size:157 final size:157
Alignment explanation
Indices: 32802943--32803442 Score: 461
Period size: 159 Copynumber: 3.2 Consensus size: 157
32802933 ACTCCGTATG
* * * * ** * *
32802943 CTTAGACAT-GGAATGAACTCCGTATACCTAA-GCCAGCCTACGAAATGAGCATGCGGGCACTCA
1 CTTAGAC-TGGGAATGAACTCCGTATCCCTAAGGCAAACC-AGGAAACAAGCATGCGGGCGCTGA
** * * * *
32803006 GCCAGCCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCTGTCCCCCGTTGCGTGCTATCGAT
64 GCTGGTCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCTGTCCCTC--TGCGTGCTATCGAT
* * *
32803071 CCTACTACTGTAACCCTCGATCCGATCCGAT
127 CCTGCTACAGCAACCCTCGATCCGATCCGAT
* * * *
32803102 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAAACCAGGAAACAAGCGTGCGGGCGCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATCCCTAAGGCAAACCAGGAAACAAGCATGCGGGCGCTGAGC
* * * * *
32803167 TGGTCGGAGAGGCATAATGCGTAAGTCGAGGATCG-GCCTGATCCCCCTCTGCGTGCTGTCGATC
66 TGGTCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCTG-T--CCCTCTGCGTGCTATCGATC
* * * ** **
32803231 CTGCTACAACAACCCTTGATCTGATTGGGG
128 CTGCTACAGCAACCCTCGATCCGATCCGAT
* * ** * *
32803261 CTTAGACAT-GGAATGAACTCCGTATCCCTAAGGCAACCCATGAAACGGGCATGTGGGCGCTTAG
1 CTTAGAC-TGGGAATGAACTCCGTATCCCTAAGGCAAACCAGGAAACAAGCATGCGGGCGCTGAG
* * * * *
32803325 -TCGGTCGGAAAGGCAGAATGAGCAAGCCGAGGATCGACCCAGTCCCTCTGGGTGCTATCGATCT
65 CT-GGTCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCTGTCCCTCTGCGTGCTATCGATCC
* *
32803389 TGCTACCGCAACCCTCGATCCGGTCCGAT
129 TGCTACAGCAACCCTCGATCCGATCCGAT
*
32803418 CTTAGACTGGGAATGAACTTCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
32803443 GTTTAGACTA
Statistics
Matches: 270, Mismatches: 62, Indels: 20
0.77 0.18 0.06
Matches are distributed among these distances:
156 1 0.00
157 60 0.22
158 6 0.02
159 191 0.71
160 8 0.03
161 4 0.01
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (157 bp):
CTTAGACTGGGAATGAACTCCGTATCCCTAAGGCAAACCAGGAAACAAGCATGCGGGCGCTGAGC
TGGTCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCTGTCCCTCTGCGTGCTATCGATCCTG
CTACAGCAACCCTCGATCCGATCCGAT
Found at i:32803459 original size:26 final size:26
Alignment explanation
Indices: 32803419--32803469 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
32803409 CGGTCCGATC
*
32803419 TTAGACTGGGAATGAACTTCGTATGT
1 TTAGACTGGGAATGAACTCCGTATGT
32803445 TTAGACTAGGG-ATGAACTCCGTATG
1 TTAGACT-GGGAATGAACTCCGTATG
32803470 CCTAAGTCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.27, C:0.14, G:0.27, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGT
Found at i:32804487 original size:159 final size:155
Alignment explanation
Indices: 32803967--32804496 Score: 449
Period size: 159 Copynumber: 3.4 Consensus size: 155
32803957 AACTCTGTAT
* * * *
32803967 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGCGTGGGCG-CTAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGTC-AG
* * * * * * *
32804031 CTTGGCCGAAGAGGCATAATGCACAAGCCGGGGATCGACCCGGTCCCCCTCTGCGTGCTGCCAGT
65 C-CGGTCGAAGAGGCATAATGCGCAAGCCAGGGATCGA-CCGATCCCCCTCTGCGTGCTACGAGT
* * *
32804096 CCCGTTGCCACAACCCTCGGTCTGGCTGGG
128 -CCGCTGCCACAACCCTCAGTCT-TCTGGG
* * * * * * *
32804126 GCATAGAGATGGAATGAACTCCTTATGCCTAAGCCAACCCACAAAACGGGCATGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCG-TCAG
* * * * * * * * *
32804191 CCGATCGAAGAGACAGATTACGTAAGCCAGGGATCGACCTATCCCCC-CTACGTGCTGTCGA-TC
65 CCGGTCGAAGAGGCATAATGCGCAAGCCAGGGATCGACCGATCCCCCTCTGCGTGCT-ACGAGTC
* * * * **
32804254 CTGCTACCGCAACCCTCTATTCGGTCT-AA
129 C-GCTGCCACAACCCTC-AGTC-TTCTGGG
* * * * **
32804283 TCTTAGA-GTAGGAATGAACTTCGTATGCCTAAGTCAACCCTTGAAACGAGCGTGCGGGCGTCGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGTC-A
* * *
32804347 GCCGGTCGAAGAGGCATAATGCGCAAGCCAGGGATCGGCTCGATCCCCCTCTGCATTCTACGAGT
64 GCCGGTCGAAGAGGCATAATGCGCAAGCCAGGGATCGAC-CGATCCCCCTCTGCGTGCTACGAGT
*
32804412 CTCGCTGCCATAACCCTCAGTCTTACTGGG
128 C-CGCTGCCACAACCCTCAGTCTT-CTGGG
* * *
32804442 GCTTAGACATGGAATGAACTCCGTATCCCTAAGCTAACCCATGAAACGAGCGTGC
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGC
32804497 AAGCACTCAG
Statistics
Matches: 284, Mismatches: 72, Indels: 30
0.74 0.19 0.08
Matches are distributed among these distances:
156 5 0.02
157 101 0.36
158 30 0.11
159 143 0.50
160 4 0.01
161 1 0.00
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.20
Consensus pattern (155 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGTCAGC
CGGTCGAAGAGGCATAATGCGCAAGCCAGGGATCGACCGATCCCCCTCTGCGTGCTACGAGTCCG
CTGCCACAACCCTCAGTCTTCTGGG
Found at i:32804642 original size:26 final size:26
Alignment explanation
Indices: 32804603--32804653 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
32804593 GGTCCGATCA
* *
32804603 TAGACTGGGAATGAGCTCTGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
32804629 TAGACTAGGG-ATGAACTCCGTATGC
1 TAGACT-GGGAATGAACTCCGTATGC
32804654 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.25, C:0.18, G:0.29, T:0.27
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:32805007 original size:26 final size:26
Alignment explanation
Indices: 32804956--32805008 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
32804946 CCGATCCGAT
*
32804956 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
32804982 CTTAGACTGGGGATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
32805008 C
1 C
32805009 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:32805077 original size:355 final size:355
Alignment explanation
Indices: 32804437--32805082 Score: 952
Period size: 355 Copynumber: 1.8 Consensus size: 355
32804427 CTCAGTCTTA
* *
32804437 CTGGGGCTTAGACATGGAATGAACTCCGTATCCCTAAGCTAACCCATGAAACGAGCGTGCAAGCA
1 CTGGGGCTTAGACATGGAATGAACTCCGTATCCATAAGCCAACCCATGAAACGAGCGTGCAAGCA
* * *
32804502 CTCAGCCGATCAGAGAGGTAGAATGCACAAGCCGGGGATCGGCCCAGTCCCTCCTGCGTGCTGTC
66 CTCAACCGATCAGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCAGTCCCACCTGCGTGCTGTC
* * *
32804567 GATCCTGCTACCGCAAACCTCGGTCCGGTCCGATCATAGACTGGGAATGAGCTCTGTATGCTTAG
131 GATCCTGCTACCGCAAACCTCGGTCCGATCCGATCATAGACTGGGAATGAACTCCGTATGCTTAG
* * * *
32804632 ACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGCCGCTTAACCGATC
196 ACTAGGGATGAACTCCATATGCCTAAGTCAACCCACGAAATGAGCATACGGCCGCTCAACCGAGC
* * *
32804697 AAAAAGGCATAATGCGCAAGTCGGGGATCAACCTTGTCCGCCTCTGCATGCTGTCGATCCCGTTG
261 AAAAAGGCAGAATACACAAGTCGGGGATCAACCTTGTCCGCCTCTGCATGCTGTCGATCCCGTTG
32804762 CTGGTCCTGCTACCACAACCCTCGATCCAG
326 CTGGTCCTGCTACCACAACCCTCGATCCAG
* **
32804792 CTGGGGCTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCATGAAACGAGCGTGCGGGCA
1 CTGGGGCTTAGACATGGAATGAACTCCGTATCCATAAGCCAACCCATGAAACGAGCGTGCAAGCA
* * * *
32804857 CTCAACCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCACCTGCGTGCTGTC
66 CTCAACCGATCAGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCAGTCCCACCTGCGTGCTGTC
** * * * *
32804922 GATCCTGCTGTCGTAACCCTTGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
131 GATCCTGCTACCGCAAACCTCGGTCCGATCCGATCATAGACTGGGAATGAACTCCGTATGCTTAG
* * * *
32804987 ACTGGGGATGAACTTCATATGCCTAAGTCAACCC-CTGAAATGAGCATGCGGGCGCTCAACCGAG
196 ACTAGGGATGAACTCCATATGCCTAAGTCAACCCAC-GAAATGAGCATACGGCCGCTCAACCGAG
* * * *
32805051 CAGAGAGGCAGGATACACATGTCGGGGATCAA
260 CAAAAAGGCAGAATACACAAGTCGGGGATCAA
32805083 ACGGGTGGTA
Statistics
Matches: 254, Mismatches: 36, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
354 1 0.00
355 253 1.00
ACGTcount: A:0.25, C:0.28, G:0.27, T:0.20
Consensus pattern (355 bp):
CTGGGGCTTAGACATGGAATGAACTCCGTATCCATAAGCCAACCCATGAAACGAGCGTGCAAGCA
CTCAACCGATCAGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCAGTCCCACCTGCGTGCTGTC
GATCCTGCTACCGCAAACCTCGGTCCGATCCGATCATAGACTGGGAATGAACTCCGTATGCTTAG
ACTAGGGATGAACTCCATATGCCTAAGTCAACCCACGAAATGAGCATACGGCCGCTCAACCGAGC
AAAAAGGCAGAATACACAAGTCGGGGATCAACCTTGTCCGCCTCTGCATGCTGTCGATCCCGTTG
CTGGTCCTGCTACCACAACCCTCGATCCAG
Found at i:32805901 original size:26 final size:26
Alignment explanation
Indices: 32805864--32805916 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
32805854 CTGGTTTGAT
* *
32805864 CTTAGACTGGGAATGTACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
32805890 CTTAGACAGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
32805916 C
1 C
32805917 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Found at i:32807568 original size:26 final size:26
Alignment explanation
Indices: 32807532--32807584 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
32807522 TCGGTCCAAT
*
32807532 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
32807558 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
32807584 C
1 C
32807585 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:32808074 original size:26 final size:26
Alignment explanation
Indices: 32808045--32808095 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
32808035 CCGGTCTGAT
32808045 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
32808071 CTTAGACTGGGGATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
32808096 ACCTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:32809184 original size:26 final size:26
Alignment explanation
Indices: 32809147--32809196 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
32809137 GCTCAAAATT
32809147 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
*
32809173 TTAGACAT-GGAATGAACTTCGTAT
1 TTAGAC-TGGGAATGAACTCCGTAT
32809197 ACGTAAGCCA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:32809683 original size:26 final size:26
Alignment explanation
Indices: 32809645--32809697 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32809635 CTGTTCCAAT
*
32809645 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTACGTATG
32809671 CTTAGACAT-GGAATGAACTACGTATG
1 CTTAGAC-TGGGAATGAACTACGTATG
32809697 C
1 C
32809698 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:32809797 original size:184 final size:183
Alignment explanation
Indices: 32809486--32809955 Score: 480
Period size: 184 Copynumber: 2.6 Consensus size: 183
32809476 TCCGGTTGGG
* * * *
32809486 GATTAGACATTGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGC-GGCTGCTCA
1 GATTAGACATGGAATGAACTACGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGC-GCTCA
* ** * * * * *
32809550 GCCAGCTGGAGAGCCAGAATGCGCAAGCCGGGGATCGGCCTAGTCCCCCCTGCGTGCTGTCGATC
65 G-CAACCAGAGAGGCAGAATGCGCAAGCAGGGGATCGACCCAGTCCCCCCTGCATGCTGTCGATC
* * * * * *
32809615 CTACTATCGCAACCTTCTGT-CTGTTCCAATCTTAGACTGGGAATGAACTCCGTAT
129 CTACTACCGCAACCCTCAGTCCAGTT-CAATCTTAGACTAGGAAAGAACTCCGTAT
* * * *
32809670 GCTTAGACATGGAATGAACTACGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAG
1 GATTAGACATGGAATGAACTACGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * *
32809735 TCGACCAGAGAGGCAGAATGCTCAAGTAGGGGATCGACCCGGTCCCCCCTGCATGCTGTCGATCT
66 -CAACCAGAGAGGCAGAATGCGCAAGCAGGGGATCGACCCAGTCCCCCCTGCATGCTGTCGATCC
* * ** *
32809800 TGCTGCCGCAACCCTCAGTCCAGTTTGATCTTAGACTAGGAAAGAACTCTGTAT
130 TACTACCGCAACCCTCAGTCCAGTTCAATCTTAGACTAGGAAAGAACTCCGTAT
* * ** * * *
32809854 GATTAGAC-TGGGGATGAATTTTGTATGCCTAAGTCAACCCATGATACGAGCATGCGGGCGCTCA
1 GATTAGACAT-GGAATGAACTACGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
* *
32809918 GCCAACCAGAGAGGCA-AGATGCGTAAGCCGGGGATCGA
65 G-CAACCAGAGAGGCAGA-ATGCGCAAGCAGGGGATCGA
32809956 ACAAGTGGTA
Statistics
Matches: 232, Mismatches: 50, Indels: 8
0.80 0.17 0.03
Matches are distributed among these distances:
183 2 0.01
184 223 0.96
185 7 0.03
ACGTcount: A:0.26, C:0.27, G:0.26, T:0.21
Consensus pattern (183 bp):
GATTAGACATGGAATGAACTACGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
CAACCAGAGAGGCAGAATGCGCAAGCAGGGGATCGACCCAGTCCCCCCTGCATGCTGTCGATCCT
ACTACCGCAACCCTCAGTCCAGTTCAATCTTAGACTAGGAAAGAACTCCGTAT
Found at i:32810934 original size:158 final size:158
Alignment explanation
Indices: 32810588--32811031 Score: 496
Period size: 158 Copynumber: 2.8 Consensus size: 158
32810578 CTTAGACATT
* * * * *
32810588 GAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCAGCCGGAGA
1 GAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAGCCAGCCGAAGA
* * * * * ** * * ** *
32810653 GGTAGAATGCGTAAGCCGGGGATCGACCCAGTCCCCCCCTATGTGCTGTCAATCCTGTTATTGTA
66 GGCATAATGCGCAAGCTGGGGATCGACCCGGT-CCCCCCTGCGTGCTATCAATCCTGCTACCGCA
* *
32810718 ACCCTCAGTCTAGACTGATCTTACACTGG
130 ACCCTCAGGCCAGACTGATCTTACACTGG
*
32810747 GAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGACGCTGAGCCAGCCGAAGA
1 GAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAGCCAGCCGAAGA
** *
32810812 GGCATAATGCGCAAGCTGGGGATCGACCCGGTCCCCCCTGCGTGCTATGGATCTTGCTACCGCAA
66 GGCATAATGCGCAAGCTGGGGATCGACCCGGTCCCCCCTGCGTGCTATCAATCCTGCTACCGCAA
** * *
32810877 CCCTTGGGCCAGTCTGATCTTTCACTGG
131 CCCTCAGGCCAGACTGATCTTACACTGG
* * * *
32810905 GAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGCGTGCGGGCACTGAGCC-GATCGAAA
1 GAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAGCCAG-CCGAAG
* * * * * * *
32810969 AGGCATAATACGCAAGTTGGGGATC-AGCCCGGTCTCGCTCTGCGTGCTGTCGATCCCGCTACC
65 AGGCATAATGCGCAAGCTGGGGATCGA-CCCGGTC-CCCCCTGCGTGCTATCAATCCTGCTACC
32811032 ACTACATTCA
Statistics
Matches: 242, Mismatches: 40, Indels: 6
0.84 0.14 0.02
Matches are distributed among these distances:
157 2 0.01
158 132 0.55
159 108 0.45
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (158 bp):
GAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAGCCAGCCGAAGA
GGCATAATGCGCAAGCTGGGGATCGACCCGGTCCCCCCTGCGTGCTATCAATCCTGCTACCGCAA
CCCTCAGGCCAGACTGATCTTACACTGG
Found at i:32811669 original size:159 final size:159
Alignment explanation
Indices: 32811380--32811676 Score: 407
Period size: 159 Copynumber: 1.9 Consensus size: 159
32811370 TGCCGATCCC
* * *
32811380 GCTGTCGGTCCTACTACCACAACCCTCAGTACGGCTGGGGCTTACACATGGAATGAACTCCGTAT
1 GCTGTCGGTCCCACTACCACAACCCTCAGTACGACTGGGGCTTACACATGGAATGAACTCCCTAT
* * * * *
32811445 GCCTAAGCCAACCCAAGAAACGAGCATGAGGGTACTGAGCCAGCCGGAGAGGCATAATGCGTAAG
66 GCCTAAGCCAACCCAAGAAACGAGCATGAGGATACTCAGCCAACCAGAGAGGCAGAATGCGTAAG
32811510 CCGAGGATCGCCCCGTTCCCCCTGTGCGT
131 CCGAGGATCGCCCCGTTCCCCCTGTGCGT
* * * *
32811539 GCTGTCGGTCCCGCTGCCACAACCCTC-GATCCGACTGGGGCTTAGACATGGAATGAACTCCCTA
1 GCTGTCGGTCCCACTACCACAACCCTCAG-TACGACTGGGGCTTACACATGGAATGAACTCCCTA
* * * * * * *
32811603 TGCCTAAGCCAACCCATGAAATGGGCGTGCGGATGCTCATCCAACCAGAGAGGCAGAATGCGTAA
65 TGCCTAAGCCAACCCAAGAAACGAGCATGAGGATACTCAGCCAACCAGAGAGGCAGAATGCGTAA
32811668 GCCGAGGAT
130 GCCGAGGAT
32811677 TGGCTCGATC
Statistics
Matches: 118, Mismatches: 19, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
158 1 0.01
159 117 0.99
ACGTcount: A:0.25, C:0.30, G:0.27, T:0.18
Consensus pattern (159 bp):
GCTGTCGGTCCCACTACCACAACCCTCAGTACGACTGGGGCTTACACATGGAATGAACTCCCTAT
GCCTAAGCCAACCCAAGAAACGAGCATGAGGATACTCAGCCAACCAGAGAGGCAGAATGCGTAAG
CCGAGGATCGCCCCGTTCCCCCTGTGCGT
Found at i:32811778 original size:26 final size:26
Alignment explanation
Indices: 32811737--32811789 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
32811727 CCGGTTCAAT
*
32811737 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
32811763 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
32811789 C
1 C
32811790 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:32818564 original size:26 final size:26
Alignment explanation
Indices: 32818534--32818586 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
32818524 GTTGACTTAG
32818534 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
32818560 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
32818586 G
1 G
32818587 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:32821582 original size:26 final size:26
Alignment explanation
Indices: 32821531--32821582 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
32821521 CGGTTCGATA
* *
32821531 TTAGACTGGGAATGAACTCTGTATGC
1 TTAGACTGGGAATGAACTCCGAATGC
*
32821557 TTAGACTGGGGATGAACTCCGAATGC
1 TTAGACTGGGAATGAACTCCGAATGC
32821583 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGAATGC
Found at i:32822289 original size:26 final size:26
Alignment explanation
Indices: 32822251--32822303 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
32822241 GGCTCAAAAT
32822251 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
32822277 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
32822303 C
1 C
32822304 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:32823089 original size:26 final size:26
Alignment explanation
Indices: 32823060--32823112 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32823050 CTGGTCCGAT
32823060 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
32823086 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
32823112 C
1 C
32823113 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:32823116 original size:185 final size:192
Alignment explanation
Indices: 32822900--32823327 Score: 509
Period size: 185 Copynumber: 2.2 Consensus size: 192
32822890 TCCAATTGGC
*
32822900 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCA-TGCGAAAACTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAG-AGTGCGAAAACTCA
* *
32822964 GCCGACCGGAGAGGCAAAATGC-TCAAGCCGAGGATCGACCCGGTCCCCCCTTACGTGCTACT-G
65 GCCGACAGGAGAGGCAAAATGCGT-AAGCCGAGGATCGACCCGATCCCCCC-TACGTGCT-CTCG
* *
32823027 AT-C-CTACT-G-T-C-G-G-AACCCTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTA
127 ATCCACTACTAGTTGCAGCGAAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTA
32823084 T
192 T
* * * ****
32823085 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGTGAGTGTGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGAGTGCGAAAACTCAG
* * * * * * *
32823150 CCGACAGGAGAGGTAGAATGCGTAAGTCGGGGATTGACCCGATCCCCCCTGCGTGCTGTCGATCC
66 CCGACAGGAGAGGCAAAATGCGTAAGCCGAGGATCGACCCGATCCCCCCTACGTGCTCTCGATCC
*
32823215 TACTACTAGTCTTGCTAGCGAAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTA
131 -ACTACTAG--TTGC-AGCGAAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTA
32823280 T
192 T
* *
32823281 GCTTATACATGGAATGAACTCCGTTTGCCTAAGCCAACCCACGAAAC
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAC
32823328 AAGCGTACGG
Statistics
Matches: 205, Mismatches: 23, Indels: 19
0.83 0.09 0.08
Matches are distributed among these distances:
183 1 0.00
184 11 0.05
185 96 0.47
186 1 0.00
187 5 0.02
188 1 0.00
191 1 0.00
192 1 0.00
194 1 0.00
195 1 0.00
196 86 0.42
ACGTcount: A:0.26, C:0.28, G:0.25, T:0.21
Consensus pattern (192 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGAGTGCGAAAACTCAG
CCGACAGGAGAGGCAAAATGCGTAAGCCGAGGATCGACCCGATCCCCCCTACGTGCTCTCGATCC
ACTACTAGTTGCAGCGAAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTAT
Found at i:32823162 original size:369 final size:368
Alignment explanation
Indices: 32822493--32823162 Score: 877
Period size: 368 Copynumber: 1.8 Consensus size: 368
32822483 CCCTCTGCGT
* *** *
32822493 GCTGTCAGTCCTGCTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTAT
1 GCTGTCAGTCCTGCTGCCACAACCCTCGATCCAACTGGCGCTTAGACATGGAATGAACTCCCTAT
* * ** * **** * * *
32822558 GCCAAATCCAACCCATGAAACGGGTGTGTGGGCGCTCAGTCGACCGGAGAAGTAGAATGCGCAAG
66 GCCAAAGCCAACCCATGAAACGAGCATGCGAAAACTCAGCCGACCGGAGAAGCAAAATGCGCAAG
* * * *
32822623 CCAGGGATCGGCCCGATCCCCCCTACATGCTGTAGATCCTACTACCGTAACCCTCGATCTGGTCT
131 CCAGGGATCGACCCGATCCCCCCTACATGCTCTAGATCCTACTACCGGAACCCTCGATCTGGTCC
* * *
32822688 GATCTTTGACTAGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTGAGCCTAAGTCAA
196 GATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTGAGCCTAAGCCAA
* *
32822753 CCCACGAAACGAGTGTGTGGTCCCTCAGTCGACCGGAGAGGCCGATCGGAGAGGCATAATGTAGA
261 CCCACGAAACGAGTGTGTGGTCCCTCAGCCGACAGGAGAGGCCGATCGGAGAGGCATAATGTAGA
32822818 AGTCGGGGATCAACCCGATCCCCCTCTACGTGTTGCCAATCTC
326 AGTCGGGGATCAACCCGATCCCCCTCTACGTGTTGCCAATCTC
* *
32822861 GCTGTC-GATCCTGCTGCCACAACCCTCGATCCAATTGGCGCTTAGACATGGAATGAACTCCGTA
1 GCTGTCAG-TCCTGCTGCCACAACCCTCGATCCAACTGGCGCTTAGACATGGAATGAACTCCCTA
* * *
32822925 TGCCTAAGCCAACCCATGAAACGAGCATGCGAAAACTCAGCCGACCGGAGAGGCAAAATGCTCAA
65 TGCCAAAGCCAACCCATGAAACGAGCATGCGAAAACTCAGCCGACCGGAGAAGCAAAATGCGCAA
* * **
32822990 GCC-GAGGATCGACCCGGTCCCCCCTTACGTGCTACT-GATCCTACTGTCGGAACCCTCGATCTG
130 GCCAG-GGATCGACCCGATCCCCCC-TACATGCT-CTAGATCCTACTACCGGAACCCTCGATCTG
* *
32823053 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAT-GGAATGAACTTCGT-ATGCCTA
192 GTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGAC-TGGGAATGAACTCCGTGA-GCCTA
*
32823116 AGCCAACCCACGAAACGTGAGTGTG-GGT-GCTCAGCCGACAGGAGAGG
255 AGCCAACCCACGAAAC--GAGTGTGTGGTCCCTCAGCCGACAGGAGAGG
32823163 TAGAATGCGT
Statistics
Matches: 256, Mismatches: 38, Indels: 15
0.83 0.12 0.05
Matches are distributed among these distances:
367 2 0.01
368 126 0.49
369 116 0.45
370 5 0.02
371 7 0.03
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (368 bp):
GCTGTCAGTCCTGCTGCCACAACCCTCGATCCAACTGGCGCTTAGACATGGAATGAACTCCCTAT
GCCAAAGCCAACCCATGAAACGAGCATGCGAAAACTCAGCCGACCGGAGAAGCAAAATGCGCAAG
CCAGGGATCGACCCGATCCCCCCTACATGCTCTAGATCCTACTACCGGAACCCTCGATCTGGTCC
GATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTGAGCCTAAGCCAA
CCCACGAAACGAGTGTGTGGTCCCTCAGCCGACAGGAGAGGCCGATCGGAGAGGCATAATGTAGA
AGTCGGGGATCAACCCGATCCCCCTCTACGTGTTGCCAATCTC
Found at i:32823752 original size:25 final size:26
Alignment explanation
Indices: 32823718--32823770 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
32823708 CTAGTTCAAT
32823718 CTTAGATTGG-GATGAACTCCGTATG
1 CTTAGATTGGTGATGAACTCCGTATG
32823743 CTTAGATTGGTGATGAACTCCGTATG
1 CTTAGATTGGTGATGAACTCCGTATG
32823769 CT
1 CT
32823771 CAGCCGACTA
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 10 0.37
26 17 0.63
ACGTcount: A:0.23, C:0.17, G:0.26, T:0.34
Consensus pattern (26 bp):
CTTAGATTGGTGATGAACTCCGTATG
Found at i:32824134 original size:159 final size:159
Alignment explanation
Indices: 32823857--32824205 Score: 434
Period size: 159 Copynumber: 2.2 Consensus size: 159
32823847 GATCCCCCTC
* * *
32823857 TGCGTGCTATCGGTCCTGCTGCCACAACCCTCGATCCAGCTGGGGCTTAGACATGGAATGAACTC
1 TGCGTGCTATCGATCCTGCTGCCACAACCCTCGATCCAGCTAGAGCTTAGACATGGAATGAACTC
*** * *
32823922 CCTATGCCTAAGCCAACCCACAAAACAGACGTGCAGGCACTCAGTTGGCCGGAGAGGCATAATGT
66 CCTATGCCTAAGCCAACCCACAAAACAGACGTGCAGGCACTCAGCCAGCCGGAGAGGCAGAATGC
32823987 GCAAGCTGGGCATTGGCCTGGTCCCCTTT
131 GCAAGCTGGGCATTGGCCTGGTCCCCTTT
* * *
32824016 TGCGTGCTGTCGATGCC-GCTGCCAGAACCCTCGGTCCAGCTAGAGCTTAGACATGGAATGAACT
1 TGCGTGCTATCGAT-CCTGCTGCCACAACCCTCGATCCAGCTAGAGCTTAGACATGGAATGAACT
* * ** * * *
32824080 CCCTATGCCTAAGCCAACCCATAAAACAGGCGTGTGGGCGCTCAGCCAGTCGGAGAGGTAGAATG
65 CCCTATGCCTAAGCCAACCCACAAAACAGACGTGCAGGCACTCAGCCAGCCGGAGAGGCAGAATG
* * * **
32824145 CGCAAGCCGGGGATCGG-CTCGGTCCCC-CC
130 CGCAAGCTGGGCATTGGCCT-GGTCCCCTTT
* *
32824174 TGCGTGCTACCGATCCTGCTGCCATAACCCTC
1 TGCGTGCTATCGATCCTGCTGCCACAACCCTC
32824206 CGTCCGGTTC
Statistics
Matches: 161, Mismatches: 26, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
157 2 0.01
158 28 0.17
159 129 0.80
160 2 0.01
ACGTcount: A:0.22, C:0.32, G:0.27, T:0.19
Consensus pattern (159 bp):
TGCGTGCTATCGATCCTGCTGCCACAACCCTCGATCCAGCTAGAGCTTAGACATGGAATGAACTC
CCTATGCCTAAGCCAACCCACAAAACAGACGTGCAGGCACTCAGCCAGCCGGAGAGGCAGAATGC
GCAAGCTGGGCATTGGCCTGGTCCCCTTT
Found at i:32825324 original size:26 final size:26
Alignment explanation
Indices: 32825295--32825347 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
32825285 CCGATCTAAT
32825295 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
32825321 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
32825347 C
1 C
32825348 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Done.