Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 359 of 402
Found at i:32825702 original size:26 final size:26
Alignment explanation
Indices: 32825661--32825713 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
32825651 CTGGTTTGAT
32825661 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
32825687 CTTAGACTGTGG-ATGAACTCCGTATG
1 CTTAGACTG-GGAATGAACTCCGTATG
32825713 C
1 C
32825714 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:32830343 original size:26 final size:26
Alignment explanation
Indices: 32830314--32830366 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
32830304 GGTGACTTAG
*
32830314 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
32830340 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
32830366 G
1 G
32830367 ATTGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:32831134 original size:159 final size:158
Alignment explanation
Indices: 32830968--32831490 Score: 541
Period size: 159 Copynumber: 3.3 Consensus size: 158
32830958 CGACTGAGCA
* * * * *
32830968 CCCGCACGCCCATTTCATGGGTTGGCTTAGGAATAGGGATTTCATTCCATGTCTAAGCCCCAGCA
1 CCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGC-
* * * **
32831033 AGATTGAGGGTTGTGGCAACGGGATCGGTAGCACGCAGAGGGGGACCGGGCCGATCCTTGACTTG
65 AGATTGAGGGTTGTGGCAGCGGGATCGGCAGCACGCAGAGGGGGACCGGGTCGATCCCCGACTTG
32831098 CGCATTATGCCTCTTCGGCCGACTCAACG
130 CGCATTATGCCTCTTCGGCCGACTCAACG
* * * * ** *
32831127 CCTGCACGCTCATTTCATGGGTTGACTTATGCATACGAAGTTCATTCCCA-GTCTAAGATCGGAT
1 CCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAAG-CCCCAG
* * * * ** *
32831191 CAGATTGAGGGTT-TCGTAGCAGGATCGACAGCACGCAG-GGGGGACTAGGTGGATCCCCGACTT
64 CAGATTGAGGGTTGTGGCAGCGGGATCGGCAGCACGCAGAGGGGGACCGGGTCGATCCCCGACTT
* ** * *
32831254 GCGCATTCTGCCTCAACGGCC-AGCTGAGCG
129 GCGCATTATGCCTCTTCGGCCGA-CTCAACG
* * * * * * * *
32831284 CCCGCGCACTCGTTGCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCTATGTCTAAGCCCCAGCC
1 CCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAG-C
** * * * * *
32831349 AGACCGAGGGATGTGGCAGTGGGATCAGCAGCATGCAGAGGGGGACCGGGTCGATCCCCGGCTTG
65 AGATTGAGGGTTGTGGCAGCGGGATCGGCAGCACGCAGAGGGGGACCGGGTCGATCCCCGACTTG
*
32831414 CGCATTATGCCTCTTCGGCCGGCTCAACG
130 CGCATTATGCCTCTTCGGCCGACTCAACG
* * *
32831443 CCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCC
1 CCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCC
32831491 CAGTCAAAGA
Statistics
Matches: 285, Mismatches: 71, Indels: 16
0.77 0.19 0.04
Matches are distributed among these distances:
156 5 0.02
157 95 0.33
158 37 0.13
159 142 0.50
160 6 0.02
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.23
Consensus pattern (158 bp):
CCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCA
GATTGAGGGTTGTGGCAGCGGGATCGGCAGCACGCAGAGGGGGACCGGGTCGATCCCCGACTTGC
GCATTATGCCTCTTCGGCCGACTCAACG
Found at i:32831306 original size:157 final size:160
Alignment explanation
Indices: 32831062--32831502 Score: 428
Period size: 157 Copynumber: 2.8 Consensus size: 160
32831052 CGGGATCGGT
* * ** **
32831062 AGCACGCAGAGGGGGACCGGGCCGATCCTTGACTTGCGCATTATGCCTCTTCGGCC-GACTCAAC
1 AGCACGCAGAGGGGGACCAGGTCGATCCCCGACTTGCGCATTATGCCTCAACGGCCAG-CTCAAC
* * * * * * **
32831126 GCCTGCACGCTCATTTCATGGGTTGACTTATGCATACGAAGTTCATTCCCAGTCTAAGATCGGA-
65 GCCCGCACACTCGTTGCGTGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAGATCCCAG
* ** * *
32831190 TCAGATTGAGGG-TTTCGTAGCAGGATC-GAC
130 CCAGACCGAGGGATGTCGCAGCAGGATCAG-C
* * * * *
32831220 AGCACGCAG-GGGGGACTAGGTGGATCCCCGACTTGCGCATTCTGCCTCAACGGCCAGCTGAGCG
1 AGCACGCAGAGGGGGACCAGGTCGATCCCCGACTTGCGCATTATGCCTCAACGGCCAGCTCAACG
* * * * * *
32831284 CCCGCGCACTCGTTGCGTGGGTTGGCTTAGGCATAGGGAGTTCATT-CTATGTCTAAG-CCCCAG
66 CCCGCACACTCGTTGCGTGGGTTGACTTATGCATACGGAGTTCATTCCCA-GTCTAAGATCCCAG
* **
32831347 CCAGACCGAGGGATGTGGCAGTGGGATCAGC
130 CCAGACCGAGGGATGTCGCAGCAGGATCAGC
* * * ** *
32831378 AGCATGCAGAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTTCGGCCGGCTCAACG
1 AGCACGCAGAGGGGGACCAGGTCGATCCCCGACTTGCGCATTATGCCTCAACGGCCAGCTCAACG
* * *
32831443 CCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCAAAGATC
66 CCCGCACACTCGTTGCGTGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAGATC
32831503 AGACCGGACC
Statistics
Matches: 222, Mismatches: 53, Indels: 14
0.77 0.18 0.05
Matches are distributed among these distances:
156 4 0.02
157 94 0.42
158 29 0.13
159 92 0.41
160 3 0.01
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.22
Consensus pattern (160 bp):
AGCACGCAGAGGGGGACCAGGTCGATCCCCGACTTGCGCATTATGCCTCAACGGCCAGCTCAACG
CCCGCACACTCGTTGCGTGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAGATCCCAGC
CAGACCGAGGGATGTCGCAGCAGGATCAGC
Found at i:32831326 original size:500 final size:500
Alignment explanation
Indices: 32830277--32831341 Score: 1200
Period size: 501 Copynumber: 2.1 Consensus size: 500
32830267 TGGGGGGTCG
* * * * * *
32830277 GCTGAGCACCCGCACGCTCATTTCATGGG-TGACTTAGGCATACGGAGTTCATCCCCA-GTCTAA
1 GCTGAGCGCCCGCACACTCGTTGCATGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAA
* * *
32830340 GCATACAGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGACAGTAAGATCGACA
65 GCATACAGAGTTCATTCCCAATCAAAGATTGGACCAGACCGAGGGTTGCGACAGTAAGATCAACA
* * ** * * **
32830405 GCACGCAGGGGGATCGGGTCGATCCCCAGCTTGTGCATTCTACCACTCCAGTCGGCTGAGTGCCC
130 GCACGAAGAGGGATCGGGTCGATCCCCAGCTTACGCATTCTACCACTCCAGCCGACTGAGCACCC
* * * * *
32830470 GCATGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTTATTCCATGTCTAAGCCCCTGTCAAA
195 GCACGCCCATTTCATGGGTTGGCTTAGGAATAGGGAGTTTATTCCATGTCTAAGCCCCAGTCAAA
* * * * *
32830535 TAGAGGGTTTTGGCAACATGATCGACAGCACGTAGAGGGGTACTGGGCCGATCCCCGACTTACGC
260 TAGAGGGTTGTGGCAACAGGATCGACAGCACGCAGAGGGGGACCGGGCCGATCCCCGACTTACGC
* * ** ** *
32830600 ATTATGACTCTTCGACCAGCTCAGCACCCGCATGCTTGTTTTGTGGGTCAACTTATGCATACGGA
325 ATTATGACTCTTCGACCAGCTCAACACCCGCACGCTCATTTCATGGGTCAACTTATGCATACGAA
* * * *
32830665 GTTCCTTCCCAGTCTAAGATCGGACTGCATCGAGGGTTACGGCAGTAAGATCGACAGAATGCAGG
390 GTTCATTCCCAGTCTAAGATCGGACAGCATCGAGGGTTACGGCAGCAAGATCGACAGAACGCAGG
* ** *
32830730 GGGGACCAGACTGATCCTCGACTTACGCATTCTACCTCTCCGACCG
455 GGGGACCAGACTGATCCCCGACTTACGCATTCTACCTCAACGACCA
* * * **
32830776 GCTGAGTGCCCGCACGCTTGTTTTATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
1 GCTGAGCGCCCGCACACTCGTTGCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
* * *
32830841 CATACGGAGTTCATTCCCAATCAAAGATTGGACC-GTATCGAGGGTTGTGACAGTACA-ATCAAC
66 CATACAGAGTTCATTCCCAATCAAAGATTGGACCAG-ACCGAGGGTTGCGACAGTA-AGATCAAC
* ** * * *
32830904 AGCACGTAAGAGGGATTGGG-CTGATCCCTGGCTTACGCATTCTGCCTCT-CTGACCGACTGAGC
129 AGCACG-AAGAGGGATCGGGTC-GATCCCCAGCTTACGCATTCTACCACTCCAG-CCGACTGAGC
32830967 ACCCGCACGCCCATTTCATGGGTTGGCTTAGGAATAGGGA-TTTCATTCCATGTCTAAGCCCCAG
191 ACCCGCACGCCCATTTCATGGGTTGGCTTAGGAATAGGGAGTTT-ATTCCATGTCTAAGCCCCAG
* * ** **
32831031 -CAAGATTGAGGGTTGTGGCAACGGGATCGGTAGCACGCAGAGGGGGACCGGGCCGATCCTTGAC
255 TCAA-ATAGAGGGTTGTGGCAACAGGATCGACAGCACGCAGAGGGGGACCGGGCCGATCCCCGAC
* * * * * **
32831095 TTGCGCATTATGCCTCTTCGGCC-GACTCAACGCCTGCACGCTCATTTCATGGGTTGACTTATGC
319 TTACGCATTATGACTCTTCGACCAG-CTCAACACCCGCACGCTCATTTCATGGGTCAACTTATGC
* * * *
32831159 ATACGAAGTTCATTCCCAGTCTAAGATCGGATCAG-ATTGAGGGTTTC-GTAGCAGGATCGACAG
383 ATACGAAGTTCATTCCCAGTCTAAGATCGGA-CAGCATCGAGGGTTACGGCAGCAAGATCGACAG
* * * * * *
32831222 CACGCAGGGGGGACTAG-GTGGATCCCCGACTTGCGCATTCTGCCTCAACGGCCA
447 AACGCAGGGGGGACCAGACT-GATCCCCGACTTACGCATTCTACCTCAACGACCA
* * * *
32831276 GCTGAGCGCCCGCGCACTCGTTGCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCTATGTCTAAG
1 GCTGAGCGCCCGCACACTCGTTGCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
32831341 C
66 C
32831342 CCCAGCCAGA
Statistics
Matches: 470, Mismatches: 84, Indels: 23
0.81 0.15 0.04
Matches are distributed among these distances:
499 29 0.06
500 209 0.44
501 230 0.49
502 2 0.00
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.24
Consensus pattern (500 bp):
GCTGAGCGCCCGCACACTCGTTGCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
CATACAGAGTTCATTCCCAATCAAAGATTGGACCAGACCGAGGGTTGCGACAGTAAGATCAACAG
CACGAAGAGGGATCGGGTCGATCCCCAGCTTACGCATTCTACCACTCCAGCCGACTGAGCACCCG
CACGCCCATTTCATGGGTTGGCTTAGGAATAGGGAGTTTATTCCATGTCTAAGCCCCAGTCAAAT
AGAGGGTTGTGGCAACAGGATCGACAGCACGCAGAGGGGGACCGGGCCGATCCCCGACTTACGCA
TTATGACTCTTCGACCAGCTCAACACCCGCACGCTCATTTCATGGGTCAACTTATGCATACGAAG
TTCATTCCCAGTCTAAGATCGGACAGCATCGAGGGTTACGGCAGCAAGATCGACAGAACGCAGGG
GGGACCAGACTGATCCCCGACTTACGCATTCTACCTCAACGACCA
Found at i:32831475 original size:316 final size:317
Alignment explanation
Indices: 32830939--32831658 Score: 870
Period size: 316 Copynumber: 2.3 Consensus size: 317
32830929 CCCTGGCTTA
* * * * * * * *
32830939 CGCATTCTGCCTC-TCTGACCGACTGAGCACCCGCACGCCCATTTCATGGGTTGGCTTAGGAATA
1 CGCATTCTGCCTCAAC-GACCGACTGAGCGCCCGCACACTCGTTGCGTGGGTTGGCTTAGGCATA
* ** * * *
32831003 GGGATTTCATTCCATGTCTAAGCCCCAGCAAGATTGAGGGTTGTGGCAACGGGATCGGTAGCACG
65 GGGAGTTCATTCCATGTCTAAGCCCCAGCAAGACCGAGGGATGTGGCAACGGGATCAGCAGCACG
** *
32831068 CAGAGGGGGACCGGGCCGATCCTTGACTTGCGCATTATGCCTCTTCGGCCGACTCAACGCCTGCA
130 CAGAGGGGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTTCGGCCGACTCAACGCCCGCA
* * * ***
32831133 CGCTCATTTCATGGGTTGACTTATGCATACGAAGTTCATTCCCAGTCTAAGATCGGATCAGATTG
195 CGCTCATTTCATGGGTTGACTTATGCATACGAAGTTCATTCCCAGTCAAAGATCAGACCAGACCA
* ** * * * **
32831198 AGGGTT-TCGTAGCAGGATCGACAGCACGCAGGGGGGACTAGGTGGATCCCCGACTTG
260 AGGGTTGCCACAGCAGGATCGACAGCACACAGGGGGGACCAAGCCGATCCCCGACTTG
* *
32831255 CGCATTCTGCCTCAACGGCC-AGCTGAGCGCCCGCGCACTCGTTGCGTGGGTTGGCTTAGGCATA
1 CGCATTCTGCCTCAACGACCGA-CTGAGCGCCCGCACACTCGTTGCGTGGGTTGGCTTAGGCATA
* * ** *
32831319 GGGAGTTCATTCTATGTCTAAGCCCCAGCCAGACCGAGGGATGTGGCAGTGGGATCAGCAGCATG
65 GGGAGTTCATTCCATGTCTAAGCCCCAGCAAGACCGAGGGATGTGGCAACGGGATCAGCAGCACG
* * *
32831384 CAGAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTTCGGCCGGCTCAACGCCCGCA
130 CAGAGGGGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTTCGGCCGACTCAACGCCCGCA
* * * *
32831449 CGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCAAAGATCAGACCGGACCA
195 CGCTCATTTCATGGGTTGACTTATGCATACGAAGTTCATTCCCAGTCAAAGATCAGACCAGACCA
* * * * * ** *
32831514 AGGGTTGCCACAGTAGGATTGATAGTACATAGGGGGGACCAAGCCGATCCTTGGCTTG
260 AGGGTTGCCACAGCAGGATCGACAGCACACAGGGGGGACCAAGCCGATCCCCGACTTG
** * * * *
32831572 CGCATTCTGCCTCTCCGACCGATTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAC
1 CGCATTCTGCCTCAACGACCGACTGAGCGCCCGCACACTCGTTGCGTGGGTTGGCTTAGGCATAG
32831637 GGAGTTCATTCCATGTCTAAGC
66 GGAGTTCATTCCATGTCTAAGC
32831659 ATACGGAGTT
Statistics
Matches: 338, Mismatches: 62, Indels: 7
0.83 0.15 0.02
Matches are distributed among these distances:
315 1 0.00
316 224 0.66
317 112 0.33
318 1 0.00
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.23
Consensus pattern (317 bp):
CGCATTCTGCCTCAACGACCGACTGAGCGCCCGCACACTCGTTGCGTGGGTTGGCTTAGGCATAG
GGAGTTCATTCCATGTCTAAGCCCCAGCAAGACCGAGGGATGTGGCAACGGGATCAGCAGCACGC
AGAGGGGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTTCGGCCGACTCAACGCCCGCAC
GCTCATTTCATGGGTTGACTTATGCATACGAAGTTCATTCCCAGTCAAAGATCAGACCAGACCAA
GGGTTGCCACAGCAGGATCGACAGCACACAGGGGGGACCAAGCCGATCCCCGACTTG
Found at i:32831667 original size:26 final size:26
Alignment explanation
Indices: 32831631--32831683 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
32831621 GTTGGCTTAG
32831631 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
32831657 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
32831683 G
1 G
32831684 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:32832405 original size:26 final size:26
Alignment explanation
Indices: 32832369--32832421 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
32832359 GTTGACTTAG
32832369 GCATACAAAGTTCATCCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
* *
32832395 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
32832421 G
1 G
32832422 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACAAAGTTCATCCCCAGTCTAA
Found at i:32833755 original size:158 final size:158
Alignment explanation
Indices: 32833454--32833796 Score: 379
Period size: 158 Copynumber: 2.2 Consensus size: 158
32833444 CCTAGTCTAA
* * * * * * *
32833454 GCATACGAAGTTCAGTCCCAGTCTAGGATCGGATCGGACCGAGGGTTACGACAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAATCGAACCGAGGGTTACGACAGCAAGATCGACA
* ** * * * * *
32833519 ACACGCAAGGGAGACCGGGTCGATCCTCAGCTTGTGCATTATGCCTTTTCGGTCGGCTCAACGCT
66 ACACGCAAGGGAGACCGGGTCGATCCTCAGATTGCACATTATACCTCTCCGATCGACTCAACGCT
* * * *
32833584 CGTACGCTTGTTTCATGGGTTGACTTAT
131 CGCACACTCGTTTCATGGGTTGACTTAG
*
32833612 GCATACGGAGTTCATTCCCAGTCTAAGATCGAATCGAACCGAGGGTTGCGACAGCAAGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAATCGAACCGAGGGTTACGACAGCAAGATCGACA
* * * * *
32833677 GCACGC-AGGGAGGATCGGGTCGATCCTC-GATTCGCACATTCTACCTCTCCGATCGACTGAGCG
66 ACACGCAAGGGA-GACCGGGTCGATCCTCAGATT-GCACATTATACCTCTCCGATCGACTCAACG
* *
32833740 AC-CGCACACTCGTTTCGTGGGTTGGCTTAG
129 -CTCGCACACTCGTTTCATGGGTTGACTTAG
32833770 GCATACGGAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
32833797 CATACGAAGT
Statistics
Matches: 154, Mismatches: 27, Indels: 8
0.81 0.14 0.04
Matches are distributed among these distances:
157 11 0.07
158 142 0.92
159 1 0.01
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGAATCGAACCGAGGGTTACGACAGCAAGATCGACA
ACACGCAAGGGAGACCGGGTCGATCCTCAGATTGCACATTATACCTCTCCGATCGACTCAACGCT
CGCACACTCGTTTCATGGGTTGACTTAG
Found at i:32833807 original size:26 final size:26
Alignment explanation
Indices: 32833770--32833822 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32833760 GTTGGCTTAG
*
32833770 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
32833796 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
32833822 G
1 G
32833823 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:32834610 original size:158 final size:158
Alignment explanation
Indices: 32834322--32834738 Score: 365
Period size: 158 Copynumber: 2.6 Consensus size: 158
32834312 ACCACCCTTT
** *
32834322 CGATCCCCGGCTTGTGCATTATGCCTCTCCGGTCGGCTGAGCGCCCGCATGCTCGTTTCATGAGT
1 CGATCCCCGGCTTGTGCATTATGCCTCTCCAATCGGCTGAGCACCCGCATGCTCGTTTCATGAGT
* * * *
32834387 TGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGATCAAACTGGACTGAGGTTTATGGCAGTAG
66 TGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGACCAAACCGGACTGAGGGTTATGGAAGTAG
32834452 GATCGGCAGCACGAAAGGGGGACCAAGC
131 GATCGGCAGCACGAAAGGGGGACCAAGC
* * * * * *
32834480 CGATCCTCGGCTTGTGCATTCTGCCTCTCCAATCGGTTGAGCACCCGTATGC-CTGTTTCGTGGG
1 CGATCCCCGGCTTGTGCATTATGCCTCTCCAATCGGCTGAGCACCCGCATGCTC-GTTTCATGAG
* ** * * * * *
32834544 TTGGCTTAGGCATTGGGAGTTCAT-TCTATGTCTAAGCCCCAACCGGACTGAGGGTTGTGGAAGT
65 TTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGACCAAACCGGACTGAGGGTTATGGAAGT
* ** * * **
32834608 AGGACCGATAGCATGTGAAA-AGGGACCGGGC
129 AGGATCGGCAGCA--CGAAAGGGGGACCAAGC
* ** *** * * * * * * *
32834639 CGATCCCTGGCTTGCACATTATAAATCTCCGACCGGCTGAGCGCCCACATGCTCATTTCGTGGGT
1 CGATCCCCGGCTTGTGCATTATGCCTCTCCAATCGGCTGAGCACCCGCATGCTCGTTTCATGAGT
* * * *
32834704 TAACTTGGGCATACAGAGTTCAT-TCCAGTCTAAGA
66 TGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGA
32834739 TCAGACTAGA
Statistics
Matches: 203, Mismatches: 51, Indels: 10
0.77 0.19 0.04
Matches are distributed among these distances:
157 3 0.01
158 119 0.59
159 76 0.37
160 5 0.02
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.25
Consensus pattern (158 bp):
CGATCCCCGGCTTGTGCATTATGCCTCTCCAATCGGCTGAGCACCCGCATGCTCGTTTCATGAGT
TGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGACCAAACCGGACTGAGGGTTATGGAAGTAG
GATCGGCAGCACGAAAGGGGGACCAAGC
Found at i:32834951 original size:316 final size:312
Alignment explanation
Indices: 32834355--32835213 Score: 805
Period size: 316 Copynumber: 2.7 Consensus size: 312
32834345 CCTCTCCGGT
* * *
32834355 CGGCTGAGCGCCCGCATGCTCGTTTCATGAGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTA
1 CGGCTGAGCGCCCGCATGCTCATTTCATGGGTTGACTTAGGCATAC-GAGTTCAT-TCCAGTCTA
* * * * * * * * **
32834420 AGATCAAACTGGACTGAGGTTTATGGCAGTAGGATCGGCAGCACGAAAGGGGGACCAAGCCGATC
64 AGATCAGACTGGAC-AAGGGTTACGGCAGCAGGATCGGTAGCACGAAGGGGGGATCGGGCCGATC
* * * * *
32834485 CTCGGCTTGTGCATTCTGCCTCTCCAATCGGTTGAGCACCCGTATGCCTGTTTCGTGGGTTGGCT
128 CTCGGCTTGCGCATT-TGCCTCTCCGATCGGCTGAGCACCCGCATGCCCGTTTCGTGGGTTGGCT
* * ** * **
32834550 TAGGCATTGGGAGTTCATTCTATGTCTAAGCCCCAACCGGACTGAGGGTTGTGGAAGTAGGACCG
192 TAGGCA-TAGGAGTTCATTCCATGTCTAAGCCCCAACCAAACTGAGGGTTGTGGAAGCAACACCG
* * **
32834615 ATAGCATGTGAAAAGGGACCGGGCCGATCC-CTGGCTTGCACATTATAAATCTCCGAC
256 ACAGCATGAGAAAAGGGACCGGGCCGATCCTC-AACTTGCACATTATAAATCTCCGAC
* * * *
32834672 CGGCTGAGCGCCCACATGCTCATTTCGTGGGTTAACTTGGGCATACAGAGTTCATTCCAGTCTAA
1 CGGCTGAGCGCCCGCATGCTCATTTCATGGGTTGACTTAGGCATAC-GAGTTCATTCCAGTCTAA
* * * * *
32834737 GATCAGACTAGATCAAGGGTTACGGTAGCAAGATCGGTAGCACGCAGGGGGGATCGGGCTGATCC
65 GATCAGACTGGA-CAAGGGTTACGGCAGCAGGATCGGTAGCACGAAGGGGGGATCGGGCCGATCC
* * *
32834802 TCGGCTTGCGCATGTTGCCTCTCCGA-CTTGCTGAGCGCCCGCATGCCCGTTTCGCGGGTTGGCT
129 TCGGCTTGCGCAT-TTGCCTCTCCGATC-GGCTGAGCACCCGCATGCCCGTTTCGTGGGTTGGCT
* * *
32834866 TAGGCATAGCGAGTTTATTCCATGTCTAAGCCCCAGCCAAA-TCGAGGGTTGT-GACAGCAACAT
192 TAGGCATAG-GAGTTCATTCCATGTCTAAGCCCCAACCAAACT-GAGGGTTGTGGA-AGCAACAC
** * * ** * **
32834929 CGACAGCATGCAG-AGGGGGACCGGGTCGATCCTCAACTTGCGCATTATACCTCTTCGGT
254 CGACAGCATG-AGAAAAGGGACCGGGCCGATCCTCAACTTGCACATTATAAATCTCCGAC
* * * ** **
32834988 TGGCTCAGCGCCCGTACCCTCATTTTTTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTA
1 CGGCTGAGCGCCCGCATGCTCATTTCATGGGTTGACTTAGGCATACG-AGTTCATT-CCAGTCTA
* * * * * *
32835053 AGAT-TGAATCGGACCAAGGGTTGCGGCAGCAGGGTCGATAGCACGTAGGGGGGATCGGGCCGAT
64 AGATCAGACT-GGA-CAAGGGTTACGGCAGCAGGATCGGTAGCACGAAGGGGGGATCGGGCCGAT
* * * * * * * *
32835117 CC-CTGGCTTACACATTTTGCCTCTTCGATCGGCTGAGCTCCCACACGCTCGTTTCATGGGTTGG
127 CCTC-GGCTTGCGCA-TTTGCCTCTCCGATCGGCTGAGCACCCGCATGCCCGTTTCGTGGGTTGG
*
32835181 CTTAGGCATATGGAGTTCATTCCACGTCTAAGC
190 CTTAGGCATA-GGAGTTCATTCCATGTCTAAGC
32835214 ATATGGAGTT
Statistics
Matches: 440, Mismatches: 87, Indels: 30
0.79 0.16 0.05
Matches are distributed among these distances:
315 7 0.02
316 244 0.55
317 186 0.42
318 3 0.01
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.25
Consensus pattern (312 bp):
CGGCTGAGCGCCCGCATGCTCATTTCATGGGTTGACTTAGGCATACGAGTTCATTCCAGTCTAAG
ATCAGACTGGACAAGGGTTACGGCAGCAGGATCGGTAGCACGAAGGGGGGATCGGGCCGATCCTC
GGCTTGCGCATTTGCCTCTCCGATCGGCTGAGCACCCGCATGCCCGTTTCGTGGGTTGGCTTAGG
CATAGGAGTTCATTCCATGTCTAAGCCCCAACCAAACTGAGGGTTGTGGAAGCAACACCGACAGC
ATGAGAAAAGGGACCGGGCCGATCCTCAACTTGCACATTATAAATCTCCGAC
Found at i:32835216 original size:26 final size:26
Alignment explanation
Indices: 32835186--32835238 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
32835176 GTTGGCTTAG
32835186 GCATATGGAGTTCATT-CCACGTCTAA
1 GCATATGGAGTTCATTCCCA-GTCTAA
32835212 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
32835238 G
1 G
32835239 ATCTGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:32835584 original size:26 final size:26
Alignment explanation
Indices: 32835553--32835605 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
32835543 GTTGACTTAG
32835553 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
* *
32835579 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
32835605 G
1 G
32835606 ATCAGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:32836099 original size:26 final size:26
Alignment explanation
Indices: 32836056--32836108 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
32836046 GTTGGCTTAG
* **
32836056 GCATACGGAGTTCATTCCTTGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
* *
32836082 GCATACGTAGCTCTTTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
32836108 G
1 G
32836109 ATTTTGAGCC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.23, C:0.26, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAGTCTAA
Found at i:32837185 original size:159 final size:159
Alignment explanation
Indices: 32836855--32837316 Score: 389
Period size: 159 Copynumber: 2.9 Consensus size: 159
32836845 GAACCAGACT
* * * * * * *
32836855 GAGGGTTGCGGTAGCAGGATCGACAACACGCAG-GGGGGACC-GGGCTGATCCTC-GGCTTACGC
1 GAGGGTTGCGGCAGCAGGACCGACAGCACGTAGAGGGGGACCAGGTC-AATCC-CAGACTTACGC
* * * * * * * * *
32836917 ATTC-TGCCTCTCCGACCAGCTGACCGCCCGAATGCCCATTTCGTGGGTTGGCTTAGGCATAGGA
64 A-TCATGCCTCTCCGACCGGCTCAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGA
* * *** *
32836981 AGTTCACTCCATGACTAAGCCCCA-ACCGG-ACC
128 AGTTCATTCCATGTCTAA-AATCAGA-TGGAACC
** * * * * *
32837013 GAGGGTTTTGGCAGCGGGACCGATAGCACGTAGAGGGTGACCGGGTCAATCCTAGACTTACGCAT
1 GAGGGTTGCGGCAGCAGGACCGACAGCACGTAGAGGGGGACCAGGTCAATCCCAGACTTACGCAT
* * * * * * **
32837078 TATGCCTTTTCGACCGGCTCAGTGCCCGCACGTTCGTTTTGTGGGTTGACTTAGGCATACGAAGT
66 CATGCCTCTCCGACCGGCTCAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGAAGT
32837143 TCATTCCCA-GTCTAAAATCAGATGGAACC
131 TCATT-CCATGTCTAAAATCAGATGGAACC
* * ** * *
32837172 GAGGGTTGCGGCAGCAGGATCGACAGCACGTAGAGGGGGACTAGGTCGGTCCCCGACTTGCGCAT
1 GAGGGTTGCGGCAGCAGGACCGACAGCACGTAGAGGGGGACCAGGTCAATCCCAGACTTACGCAT
* * * * *
32837237 CCTGCCTCTCCGGCTGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGAAGT
66 CATGCCTCTCCGACCGGCTCAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGAAGT
32837302 TCATTCCATGTCTAA
131 TCATTCCATGTCTAA
32837317 GCATACGGAT
Statistics
Matches: 236, Mismatches: 60, Indels: 15
0.76 0.19 0.05
Matches are distributed among these distances:
158 33 0.14
159 197 0.83
160 6 0.03
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (159 bp):
GAGGGTTGCGGCAGCAGGACCGACAGCACGTAGAGGGGGACCAGGTCAATCCCAGACTTACGCAT
CATGCCTCTCCGACCGGCTCAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGAAGT
TCATTCCATGTCTAAAATCAGATGGAACC
Found at i:32837465 original size:184 final size:185
Alignment explanation
Indices: 32837145--32837500 Score: 466
Period size: 184 Copynumber: 1.9 Consensus size: 185
32837135 TACGAAGTTC
* *
32837145 ATTCCCAGTCTAAAATCAGATGGAACCGAGGGTTGCGGCAGCAGGATCGACAGCACGTAGAGGGG
1 ATTCCCAGTCTAAAATCAGATGGAACCAAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGG
* * * * * * *
32837210 GACTAGGTCGGTCCCCGACTTGCGCATCCTGCCTCTCCGGCTGGCTGAGCGCCCGCACGCTCATT
66 GACCAAGCCGATCCCCGACTTGCGCATCCTACCTCCCCGGCCGGCTGAGCGCCCGCACGCTCATT
*
32837275 TCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCATACGGATTTA
131 TCATGGGTTGGCCTAGGCATACGAAGTTCATTCCATGTCTAAGCATACGGATTTA
* * * * *
32837330 ATTCCTAGTCTAAGATCGGATCGG-ACCAAGGGTTGTGGCAGCAGGATCGGCAGCACGCAG-GGG
1 ATTCCCAGTCTAAAATCAGAT-GGAACCAAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGG
* * * * *
32837393 GGACCAAGCCGATCCCTGGCTTGCGCATTCTACCTCCCCGGCCGGCTGAGCGCCCGCAC-ATCCG
65 GGACCAAGCCGATCCCCGACTTGCGCATCCTACCTCCCCGGCCGGCTGAGCGCCCGCACGCT-CA
* **
32837457 TTTCATGGGTTGGCCTAGGCATAGGGCGTTCATTCCATGTCTAA
129 TTTCATGGGTTGGCCTAGGCATACGAAGTTCATTCCATGTCTAA
32837501 ACCCCAGCCG
Statistics
Matches: 146, Mismatches: 23, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
183 1 0.01
184 93 0.64
185 50 0.34
186 2 0.01
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.22
Consensus pattern (185 bp):
ATTCCCAGTCTAAAATCAGATGGAACCAAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGG
GACCAAGCCGATCCCCGACTTGCGCATCCTACCTCCCCGGCCGGCTGAGCGCCCGCACGCTCATT
TCATGGGTTGGCCTAGGCATACGAAGTTCATTCCATGTCTAAGCATACGGATTTA
Found at i:32837733 original size:502 final size:501
Alignment explanation
Indices: 32836716--32837857 Score: 1229
Period size: 502 Copynumber: 2.3 Consensus size: 501
32836706 ACCACCCGTT
* * * * ** * * * * **
32836716 CGATCCCCGGCTTGTGCATCCTACCTCTCTGGTCAACTAAGCACCTGCACGCTCATTTCGTAAGT
1 CGATCCCCGACTTGCGCATCCTGCCTCTCCGACCGACTGAGCACCCGCACGCTCATTTCATGGGT
* * * * * *
32836781 TGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGTATATGGAGTTCATTCCCAATCTAAGATC
66 TGGCTTAGGCATACGAAGTTCAT-TCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * ** * ** *
32836845 GAACCAGACTGAGGGTTGCGGTAGCAGGATCGACAACACGCAGGGGGGACCGGGCTGATCCTCGG
130 GGATCGGACCAAGGGTTGCGGCAGCAGGATCGACAACACGCAGGGGGGACCAAGCCGATCCTCGG
* * * *
32836910 CTTACGCATTCTGCCTCTCCGACCAGCTGACCGCCCGAATGCCCATTTCGTGGGTTGGCTTAGGC
195 CTTACGCATTCTACCTCCCCGACCAGCTGACCGCCCGAAT-CCCATTTCATGGGTTGGCCTAGGC
* *** * * *
32836975 ATAGGAAGTTCACTCCATGACTAAGCCCCAACCGGACCGAGGGTTTTGGCAGCGGGACCGATAGC
259 ATAGGAAGTTCACTCCATGACTAAACCCCAACCGGACCGACAATTGTGGCAGCGAGACCGACAGC
* * * * *
32837040 ACGTAGAGGGTGACCGGGTCAATCCTAGACTTACGCATTATGCCTTTTCGACCGGCTCAGTGCCC
324 ACGCAGAGGGGGACCGGGTCAATCCTAGACTTACGCATTATGCCTCTCCGACCGGCTCAGCGCCC
* * * *
32837105 GCACGTTCGTTTTGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAAATCAGATGGAA
389 GCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAAATCAGATAGAA
* *
32837170 CCGAGGGTTGCGGCAGCAGGATCGACAGCACGTAGAGGGGGACTAGGT
454 CCGAGGGTTGCGGCAGCAGGATCAACAGCACGTAGAGGGGGACTAGGG
* * * * *
32837218 CGGTCCCCGACTTGCGCATCCTGCCTCTCCGGCTGGCTGAGCGCCCGCACGCTCATTTCATGGGT
1 CGATCCCCGACTTGCGCATCCTGCCTCTCCGACCGACTGAGCACCCGCACGCTCATTTCATGGGT
* * *
32837283 TGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCATACGGATTTAATTCCTAGTCTAAGATCG
66 TGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
* * *
32837348 GATCGGACCAAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGGGGGGACCAAGCCGATCC-CTGG
131 GATCGGACCAAGGGTTGCGGCAGCAGGATCGACAACACGCAGGGGGGACCAAGCCGATCCTC-GG
* * * * *
32837412 CTTGCGCATTCTACCTCCCCGGCCGGCTGAGCGCCCGCACAT-CCGTTTCATGGGTTGGCCTAGG
195 CTTACGCATTCTACCTCCCCGACCAGCTGACCGCCCG-A-ATCCCATTTCATGGGTTGGCCTAGG
** * * * * * *
32837476 CATAGGGCGTTCATTCCATGTCTAAACCCCAGCCGGTCTGACAATTGTGGCAGCGAGACCGACGG
258 CATAGGAAGTTCACTCCATGACTAAACCCCAACCGGACCGACAATTGTGGCAGCGAGACCGACAG
* * * * *
32837541 CATGCAGAGGGGGACCGGGTCGATCCCT-GACTTGCGCATTATGCCTCTCCGGCTGGCTCAGCGC
323 CACGCAGAGGGGGACCGGGTCAAT-CCTAGACTTACGCATTATGCCTCTCCGACCGGCTCAGCGC
* * * *
32837605 CCGTACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCTCAGTCTAAGATCAGATCA
387 CCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAAATCAGAT-A
* * ** * * * *
32837670 G-ATCGAGTGTTGTTGTAGCAGTATCAACAGCAGGTAG-GAGGGGA-TCGGG
451 GAACCGAGGGTTGCGGCAGCAGGATCAACAGCACGTAGAG-GGGGACTAGGG
* * ** * *
32837719 CTGATCCTCGACTTGTGCATTTTGCCTCTCCGACCGACTGAGCACCCGTACGCTCGTTTCATGGG
1 C-GATCCCCGACTTGCGCATCCTGCCTCTCCGACCGACTGAGCACCCGCACGCTCATTTCATGGG
* * * *
32837784 TTCGTTTAGGCATACTGAA-TTGATTTCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
65 TTGGCTTAGGCATAC-GAAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
*
32837848 TGGATCGGAC
129 CGGATCGGAC
32837858 TGAAGGTTAC
Statistics
Matches: 524, Mismatches: 107, Indels: 18
0.81 0.16 0.03
Matches are distributed among these distances:
501 9 0.02
502 505 0.96
503 8 0.02
504 2 0.00
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (501 bp):
CGATCCCCGACTTGCGCATCCTGCCTCTCCGACCGACTGAGCACCCGCACGCTCATTTCATGGGT
TGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
GATCGGACCAAGGGTTGCGGCAGCAGGATCGACAACACGCAGGGGGGACCAAGCCGATCCTCGGC
TTACGCATTCTACCTCCCCGACCAGCTGACCGCCCGAATCCCATTTCATGGGTTGGCCTAGGCAT
AGGAAGTTCACTCCATGACTAAACCCCAACCGGACCGACAATTGTGGCAGCGAGACCGACAGCAC
GCAGAGGGGGACCGGGTCAATCCTAGACTTACGCATTATGCCTCTCCGACCGGCTCAGCGCCCGC
ACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAAATCAGATAGAACC
GAGGGTTGCGGCAGCAGGATCAACAGCACGTAGAGGGGGACTAGGG
Found at i:32838707 original size:158 final size:157
Alignment explanation
Indices: 32838226--32838707 Score: 412
Period size: 158 Copynumber: 3.0 Consensus size: 157
32838216 AGACCAGACC
** * * * * * *
32838226 GAGGGTTACGGTAGCAGGATCGACAACACACAGGAGGGACCAAATCGATCCCTGGCTTGTGCATT
1 GAGGGTTACGACAGCAAGATCGACAGCACACAGGGGGGACCAAGTCGATCCCCGGCTTGCGCATT
* * * * *
32838291 CCGCCTCTCCGACCGACTGAGCGCCCACACGCCCGTTTCGTGGGTTGGCTTAGGCTTTGGGAGTT
66 CTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATT-GGAGTT
*
32838356 CATCCCATGTCTAAGCCCCAGTCGGA-T
130 CATTCCATGTCTAAGCCCCAGTCGGACT
* ** ** * * ** * ** * **
32838383 CAAGGGTTGTGGTAGCGAGACCGGTAGCACACAGAAGGGGACCGGGCCGATCCCCAACTTGCGCA
1 -GAGGGTTACGACAGCAAGATCGACAGCACACAG-GGGGGACCAAGTCGATCCCCGGCTTGCGCA
* * * * * * * * * *
32838448 TTATGCCTTTTCGGCCGGCTCAGCGCCTGCTCGCTCATTTCGTGGGTTGACTTAGGCATATGAAG
64 TTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCAT-TGGAG
*** * *
32838513 TTCATTCCCA-GTCTAAG-ATTAGATCGAACC
128 TTCATT-CCATGTCTAAGCCCCAG-TCGGACT
* * * *
32838543 GAGGGTTACGACAGTAAGATCGACAGCACGCAGGGGGGATCAAGTGGATCCCCGGCTTGCGCATT
1 GAGGGTTACGACAGCAAGATCGACAGCACACAGGGGGGACCAAGTCGATCCCCGGCTTGCGCATT
* * * *
32838608 CTGTCTCTCCGACCGGCTGAGTGCCCGCACGCTTGTTTCATGGGTTGGCTTAGGCATTCGGAGTT
66 CTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATT-GGAGTT
32838673 CATTCCATGTCTAAGCCCCAGTCGGACT
130 CATTCCATGTCTAAGCCCCAGTCGGACT
32838701 GAGGGTT
1 GAGGGTT
32838708 GTGGCAGCAG
Statistics
Matches: 238, Mismatches: 78, Indels: 16
0.72 0.23 0.05
Matches are distributed among these distances:
157 4 0.02
158 122 0.51
159 108 0.45
160 4 0.02
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (157 bp):
GAGGGTTACGACAGCAAGATCGACAGCACACAGGGGGGACCAAGTCGATCCCCGGCTTGCGCATT
CTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATTGGAGTTC
ATTCCATGTCTAAGCCCCAGTCGGACT
Found at i:32839257 original size:26 final size:26
Alignment explanation
Indices: 32839221--32839273 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
32839211 GTTGACTTAG
*
32839221 GCATACGGAGTTAATCCCCAGTCTAA
1 GCATAAGGAGTTAATCCCCAGTCTAA
*
32839247 GCATAAGGAGTTCATCCCCAGTCTAA
1 GCATAAGGAGTTAATCCCCAGTCTAA
32839273 G
1 G
32839274 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATAAGGAGTTAATCCCCAGTCTAA
Found at i:32839431 original size:367 final size:366
Alignment explanation
Indices: 32838503--32839431 Score: 920
Period size: 377 Copynumber: 2.5 Consensus size: 366
32838493 GTTGACTTAG
* * * * *
32838503 GCATATGAAGTTCATTCCCAGTCTAAGATTAGATCGAACCGAGGGTTAC-GACAGTAAGATCGAC
1 GCATAAGAAGTTCATTCCCAGTCTAAGATTAGATCGGACCGAGGGTTGCGGA-GGTAGGATCGAC
* * * * * *
32838567 AGCACGCAGGGGGGATCAAGTGGATCCCCGGCTTGCGCATTCTGTCTCTCCGACCGGCTGAGTGC
65 AGCACGCAGGGGGGACCAGGTCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGTGC
* * *
32838632 CCGCACGCTTGTTTCATGGGTTGGCTTAGGCATTCGGAGTTCATTCCATGTCTAAGCCCCAGTCG
130 CCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCG
* * * *
32838697 GACTGAGGGTTGTGGCAGCAGGACCGCAGTGAGATCGACAGCACGTAGAGGGAGATCGGGTTAAT
195 AACTGAGGGTTGTGGCAGCAGGACCGCAGCGAGATCGACAGCACGTAGAGGGAGACCGGGCTAAT
* ** * * *
32838762 CCTCGGTTGTGCATTATGCCTCTCCGATCGACCTTTCCGGCCGACAGAGCGCCCGCACGCTCGTT
260 CCTCGCTTACGCATTATGCCTCTCCGATCGACCTTTCCGACCGACAGAGCGCCCGCACACTCATT
* * * *
32838827 TCGCAGGTTGGCTTAGGCATATAGAGTTCATTCCATGTCTAA
325 TCGCAGGTTGACTTAGGCATACAGAGTTAATCCCATGTCTAA
* * * *
32838869 GCATATGAAGTTCATTCCCA-ACTAAGATTGGATCGGACCAAGGGTTGCGACAGCAAGACCAGTA
1 GCATAAGAAGTTCATTCCCAGTCTAAGATTAGATCGGACCGAGGGTTGCG---G--AG----GT-
* * * * * **
32838933 GCAGGATCGACAGCACGAAGGGGGGACCAGGCCAATCCTTGGCTTGTGCATTCTGCCTCTCTAGC
56 --AGGATCGACAGCACGCAGGGGGGACCAGGTCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGC
** ** * * *
32838998 CGAATGAGCACCCGCAGGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTGATTCCATGTCTA
119 CGGCTGAGTGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
* * **
32839063 AGCCCCAGCCGAA-TCGAGGGTTGTGGTAGCAGGATCGGTGACGAGATCGACAGCACGTAGAGGG
184 AGCCCCAGCCGAACT-GAGGGTTGTGGCAGCAGGACCGCAG-CGAGATCGACAGCACGTAGAGGG
* * * * * * * * *
32839127 GGACCGGGCTGATCCTTGACTTACGCATTATGCCTTTCTG-GCTGGCCTCTT-CGACCGGCTGAG
247 AGACCGGGCTAATCCTCG-CTTACGCATTATGCCTCTCCGATC-GACCT-TTCCGACCGACAGAG
* ** * *
32839190 TGCCCGTGCACTCATTTCG-TGGTTGACTTAGGCATACGGAGTTAATCCCCA-GTCTAA
309 CGCCCGCACACTCATTTCGCAGGTTGACTTAGGCATACAGAGTTAAT-CCCATGTCTAA
* * * * * *
32839247 GCATAAGGAGTTCATCCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGTGGTAGGATCGACA
1 GCATAAGAAGTTCATTCCCAGTCTAAGATTAGATCGGACCGAGGGTTGCGGAGGTAGGATCGACA
* *
32839312 GCACGCAGGGGGGACCTGGTCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGTGCC
66 GCACGCAGGGGGGACCAGGTCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGTGCC
** * * * *
32839377 TACACGCCCGTTTCGTGGGTTGGCTGAGGCATAGGGAGTTCATTCCCA-GTCTAAG
131 CGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAG
32839432 ATCAGCCGAA
Statistics
Matches: 448, Mismatches: 94, Indels: 41
0.77 0.16 0.07
Matches are distributed among these distances:
365 23 0.05
366 20 0.04
367 104 0.23
368 3 0.01
369 1 0.00
370 2 0.00
371 1 0.00
374 3 0.01
376 2 0.00
377 137 0.31
378 81 0.18
379 69 0.15
380 2 0.00
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.24
Consensus pattern (366 bp):
GCATAAGAAGTTCATTCCCAGTCTAAGATTAGATCGGACCGAGGGTTGCGGAGGTAGGATCGACA
GCACGCAGGGGGGACCAGGTCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGTGCC
CGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGA
ACTGAGGGTTGTGGCAGCAGGACCGCAGCGAGATCGACAGCACGTAGAGGGAGACCGGGCTAATC
CTCGCTTACGCATTATGCCTCTCCGATCGACCTTTCCGACCGACAGAGCGCCCGCACACTCATTT
CGCAGGTTGACTTAGGCATACAGAGTTAATCCCATGTCTAA
Found at i:32839810 original size:26 final size:26
Alignment explanation
Indices: 32839774--32839826 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
32839764 GTTGGCTTAG
32839774 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
32839800 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
32839826 G
1 G
32839827 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:32840173 original size:26 final size:26
Alignment explanation
Indices: 32840137--32840187 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
32840127 GTTGACTTAG
32840137 GCATACGGAGTTCATCCCCAGTCTAT
1 GCATACGGAGTTCATCCCCAGTCTAT
*
32840163 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATCCCCAGTCTA
32840188 AGATCAGACC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAT
Found at i:32840982 original size:159 final size:158
Alignment explanation
Indices: 32840570--32840997 Score: 441
Period size: 159 Copynumber: 2.7 Consensus size: 158
32840560 CGACTGAGCA
* * **
32840570 CCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACC
1 CCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACC
* * * *
32840635 AGATCGAGGGTTGCGGTAGCAGGATTGGCAACATGTAGGGGGGACCGGGCCGATCCATAGCTTGC
66 AGATCGAGGGTTGCGGTAGCAGGATTGACAGCATGCAGGGGGGACCGGGCCAATCCATAGCTTGC
* * *
32840700 GCATTTTGCCTCTCCGACCGGCTGAGCG
131 GCATTATGCCTCTCCGACCGGCTCAACG
* * **
32840728 CCCGCACGC-CAATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATT-CTATGTCTAAGCCCTAG
1 CCCGCACGCTC-ATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTA-GTCTAAGATC-AG
** * * * ** *
32840791 -CTGGATCGAGGGTTGTGGCAGCGGGACCGACAGCATGCAGAGGGGGACCGGGCCAATCCCCTA-
63 ACCAGATCGAGGGTTGCGGTAGCAGGATTGACAGCATGCAG-GGGGGACCGGGCCAAT-CCATAG
* * * ** *
32840854 CTTGTGCATTATGCCTTTCTGGTCGGCTCAATG
126 CTTGCGCATTATGCCTCTCCGACCGGCTCAACG
* * *
32840887 CCCGCACGCTCGTTTCATGGGTTGACTTAAGCATACGGAGTTCATTCCTAGTCTACGATCAGACC
1 CCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACC
* * * * * *
32840952 AGACCAAGGGTTACAGTAGTAGGATTGACAGCACGCAGGGGGGACC
66 AGATCGAGGGTTGCGGTAGCAGGATTGACAGCATGCAGGGGGGACC
32840998 AAGCCTATCC
Statistics
Matches: 213, Mismatches: 49, Indels: 16
0.77 0.18 0.06
Matches are distributed among these distances:
157 3 0.01
158 88 0.41
159 114 0.54
160 8 0.04
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.23
Consensus pattern (158 bp):
CCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACC
AGATCGAGGGTTGCGGTAGCAGGATTGACAGCATGCAGGGGGGACCGGGCCAATCCATAGCTTGC
GCATTATGCCTCTCCGACCGGCTCAACG
Found at i:32841127 original size:26 final size:26
Alignment explanation
Indices: 32841075--32841127 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
32841065 GTTAGCTTAG
* *
32841075 GCATACGGAGTTCAATCCATGTTTAA
1 GCATACGAAGTTCAATCCATGTCTAA
*
32841101 GCATACGAAGTTCATTCCCA-GTCTAA
1 GCATACGAAGTTCAAT-CCATGTCTAA
32841127 G
1 G
32841128 ATTTTGAGCC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCAATCCATGTCTAA
Found at i:32841833 original size:26 final size:26
Alignment explanation
Indices: 32841797--32841849 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
32841787 GTTGACTTAG
32841797 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
32841823 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
32841849 G
1 G
32841850 ATCGAATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:32842708 original size:26 final size:26
Alignment explanation
Indices: 32842678--32842730 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
32842668 GTTGACTTAG
32842678 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* * *
32842704 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
32842730 G
1 G
32842731 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:32843254 original size:10 final size:11
Alignment explanation
Indices: 32843229--32843253 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
32843219 TTCCCAGTCT
32843229 AAAATTTTAAA
1 AAAATTTTAAA
32843240 AAAATTTTAAA
1 AAAATTTTAAA
32843251 AAA
1 AAA
32843254 TCTCGAACCG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (11 bp):
AAAATTTTAAA
Found at i:32843546 original size:26 final size:26
Alignment explanation
Indices: 32843497--32843550 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
32843487 GGTTGAGCTT
*
32843497 AGCATACGGAGTTCATCTCTAGTCTA
1 AGCATACGGAGTTCATCTCCAGTCTA
32843523 AGCATACGGAGTTCAT-TCCCAGTCTA
1 AGCATACGGAGTTCATCT-CCAGTCTA
32843549 AG
1 AG
32843551 ATTAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (26 bp):
AGCATACGGAGTTCATCTCCAGTCTA
Found at i:32844561 original size:26 final size:26
Alignment explanation
Indices: 32844531--32844583 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
32844521 GTTGACTTAG
*
32844531 GCATACAAAGTTCATTCTCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
***
32844557 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
32844583 G
1 G
32844584 ATCAGACTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAGTCTAA
Found at i:32845017 original size:26 final size:26
Alignment explanation
Indices: 32844981--32845033 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
32844971 CTTGGCTTAG
32844981 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
32845007 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
32845033 G
1 G
32845034 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:32848485 original size:26 final size:26
Alignment explanation
Indices: 32848444--32848496 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
32848434 CCGGTCCGAT
* *
32848444 CTTAGACTGGAAATGAACTTCATATG
1 CTTAGACTAGAAATGAACTCCATATG
*
32848470 CTTAGACTAGAGATGAACTCCATATG
1 CTTAGACTAGAAATGAACTCCATATG
32848496 C
1 C
32848497 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGAAATGAACTCCATATG
Found at i:32849197 original size:26 final size:26
Alignment explanation
Indices: 32849156--32849208 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
32849146 CTGGTCTGAT
*
32849156 CTTAGACTGTGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
32849182 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
32849208 C
1 C
32849209 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:32851639 original size:159 final size:158
Alignment explanation
Indices: 32851279--32851699 Score: 465
Period size: 159 Copynumber: 2.7 Consensus size: 158
32851269 GGCTTAAACT
* * *
32851279 TGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGTGGGCACTAAGCCGGCCAGA
1 TGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTAAGCCGGCCGGA
* * * * ** *
32851344 GAGGCAGAATGCGCAAGTCGGGGATCAGCCCGAT-CCCC-CTGCATGCTATCGATCTTCCTGTCG
66 GAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCTCTGCATGCTATCGATCTTCCTACCA
* *
32851407 CAACCCTCGGTCCAGTCTGATCTTAGAC
131 CAACCCTCGGTCCAGTCTGAGCATAGAC
* * ** * * **
32851435 TAGGAAGGAACTCCGTATGCCTAAGTAAACCCACGAAATGAGCGTGCGGGCGCTGAGCCGATCGG
1 T-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTAAGCCGGCCGG
* * * * *
32851500 AGAGGCATAATAG-GCAAGCCAGGGATCGGCCTGGTCCCCCTCTGCTTGCTGTCGGTC-TCGCTA
65 AGAGGCAGAAT-GCGCAAGCCAGGGATCGGCCCGGTCCCCCTCTGCATGCTATCGATCTTC-CTA
*
32851563 CCACAACCCTCGGTCCAG-CTAGGGCATAGAC
128 CCACAACCCTCGGTCCAGTCT-GAGCATAGAC
* * * *
32851594 ATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCGGGCGCTCAGTCGGCCGG
1 -TGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTAAGCCGGCCGG
* * *
32851659 AGAGGCAGAATGCGTAAGCTAAGGATCGGCCCGGTCCCCCT
65 AGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCT
32851700 TACGTGCTGC
Statistics
Matches: 215, Mismatches: 42, Indels: 13
0.80 0.16 0.05
Matches are distributed among these distances:
156 1 0.00
157 79 0.37
158 10 0.05
159 124 0.58
160 1 0.00
ACGTcount: A:0.24, C:0.31, G:0.29, T:0.17
Consensus pattern (158 bp):
TGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTAAGCCGGCCGGA
GAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCTCTGCATGCTATCGATCTTCCTACCA
CAACCCTCGGTCCAGTCTGAGCATAGAC
Found at i:32851775 original size:26 final size:26
Alignment explanation
Indices: 32851746--32851796 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
32851736 TGGTCTAATC
32851746 TTAGACTGGGAATGAACTCTGTATGG
1 TTAGACTGGGAATGAACTCTGTATGG
* *
32851772 TTAGACTGGGGATGAACTTTGTATG
1 TTAGACTGGGAATGAACTCTGTATG
32851797 CCTAAGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.10, G:0.31, T:0.33
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCTGTATGG
Found at i:32853018 original size:26 final size:26
Alignment explanation
Indices: 32852979--32853031 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32852969 GGCTCAAAAT
32852979 CTTAGACTGAGAATGAACTCCATATG
1 CTTAGACTGAGAATGAACTCCATATG
*
32853005 CTTAGACATG-GAATGAACTCCGTATG
1 CTTAGAC-TGAGAATGAACTCCATATG
32853031 C
1 C
32853032 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCATATG
Found at i:32853497 original size:26 final size:26
Alignment explanation
Indices: 32853461--32853513 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
32853451 CCAATCCGAT
32853461 CTTAGACTGGGAATGAACCCTATATG
1 CTTAGACTGGGAATGAACCCTATATG
* * *
32853487 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACCCTATATG
32853513 C
1 C
32853514 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACCCTATATG
Found at i:32853869 original size:26 final size:26
Alignment explanation
Indices: 32853840--32853892 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
32853830 CCGATCCGAT
32853840 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
32853866 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
32853892 C
1 C
32853893 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:32854127 original size:158 final size:158
Alignment explanation
Indices: 32853865--32854331 Score: 494
Period size: 158 Copynumber: 2.9 Consensus size: 158
32853855 AACTCCGTAT
* *
32853865 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCT-AA
* * * *
32853930 -CCGGTCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGGTCCCCCCTGCATGCTGTCGATC
65 GCCGGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATC
** * * *
32853994 CTGATGCTGCATCCCTCGGTCCAGTCTGA-
130 CTGATGCCACAACCCTCGATCC-GGCTGAG
* * * * * *
32854023 TCTTAGAC-TAGGAATGAACTTCGTATGCCTAAGTCAACCCACAAAATGAGCATGCGGGTGCTAA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTAA
* * * * * * * *
32854087 GCCGACCAGAGAGGCATAATGCGCAAGCCGAGGATTGGCCCGATCCTCCTCTTCGTGCTG-CCAG
65 GCCGGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCC-CCCCTGCGTGCTGTCGA-
* *
32854151 TCCCGCTGCCACAACCCTCGATCCGGCTGAG
128 TCCTGATGCCACAACCCTCGATCCGGCTGAG
* * * * *
32854182 GCTTAGACATGGAATGAACTCCCTATGCCCAAGCCAACCCACGAAACGGGCATGTGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTAAG
* * * * * *
32854247 CCGGCCAAAAAGGCAGAATGCGCAAGCCGGGGATCGACCCAGTTCCCCCTGCGTGTTGTCGATCC
66 CCGGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCC
*
32854312 TGCA-GCCATAACCCTCGATC
131 TG-ATGCCACAACCCTCGATC
32854332 TAGTTCGATC
Statistics
Matches: 246, Mismatches: 55, Indels: 16
0.78 0.17 0.05
Matches are distributed among these distances:
157 3 0.01
158 125 0.51
159 117 0.48
160 1 0.00
ACGTcount: A:0.23, C:0.32, G:0.27, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTAAG
CCGGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCC
TGATGCCACAACCCTCGATCCGGCTGAG
Found at i:32854377 original size:26 final size:26
Alignment explanation
Indices: 32854341--32854393 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
32854331 CTAGTTCGAT
32854341 CTTAGACTGGGAAGGAACTCCGTATG
1 CTTAGACTGGGAAGGAACTCCGTATG
* *
32854367 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAAGGAACTCCGTATG
32854393 C
1 C
32854394 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.21, G:0.30, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAAGGAACTCCGTATG
Found at i:32855024 original size:26 final size:26
Alignment explanation
Indices: 32854982--32855034 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32854972 GGCTCAAAAA
*
32854982 CTTAGACTGGGAGTGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
32855008 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
32855034 C
1 C
32855035 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:32855481 original size:26 final size:26
Alignment explanation
Indices: 32855452--32855504 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
32855442 CCGATCTGAT
32855452 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
* * *
32855478 CTTAGATTGGGGATGAACTCTTTATG
1 CTTAGACTGGGAATGAACTCTGTATG
32855504 C
1 C
32855505 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.15, G:0.26, T:0.34
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:32855997 original size:367 final size:367
Alignment explanation
Indices: 32855276--32856213 Score: 1003
Period size: 367 Copynumber: 2.6 Consensus size: 367
32855266 GGAATGAACT
* ** *
32855276 CCCTCGGTCCGACT-AGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCAATGAAAT
1 CCCTCGATCCGACTGA-GGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAAT
* * * * * * *
32855340 GGGCGTGCGGGTGCTCAACCGGCCGGAGAGGCAGGATGCACAAG-CTGAGGATTGGCCC-AGTCC
65 GAGCGTGCGGG-GATCAGCCGGTCGGAGAGGCAGAATGCACAAGCCAG-GGATCGGCCCGA-TCC
* ** * *
32855403 CCCCTGCGTGCTACCGATCCTGCTACCGTAACCTTCGATCCGATCTGATCTTAGACTGGGAATGA
127 CCCCTACGTGCTGTCGATCCTGCTACCGCAACCTTCGATCCGGTCTGATCTTAGACTGGGAATGA
* * * * * *
32855468 ACTCTGTATGCTTAGATTGGGGATGAACTCTTTATGCCTAAGTCAACCCACCAAACGAGCTTGCG
192 ACTCCGTATGCTTAGACTGGCGATGAACTCTGTATGCCTAAGTCAACCCACCAAACGAGCGTACG
* **** * **
32855533 GGCACTCAGTTGGCCAGAGAGGCCAACCAGAGAGGCATAATATGCAAGTCGAGGATCAGCCTAGT
257 GACACTCAGCCACCCAGAGAGGCCAACCAAAGAGGCATAATACACAAGTCGAGGATCAGCCTAGT
* * *
32855598 CCCCCACTGCGTGCTGTCGATCCCGCTGCTGGTCCTA-CTGCCATAA
322 CCCCCACTGCGTGCTGTCCATCCCGCTGCTGGTCC-AGCTACCACAA
* * **
32855644 CCCTCGATCCGGCTGAGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACA
1 CCCTCGATCCGACTGAGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAATG
* * **
32855709 AGCGTGCGGGGATCGGTCGGTCGGAGAGGCAGAATGCGTAAGCCAGGGATCGGCCCGATCCCCCC
66 AGCGTGCGGGGATCAGCCGGTCGGAGAGGCAGAATGCACAAGCCAGGGATCGGCCCGATCCCCCC
* * * * *
32855774 TACATGCTGTCGATCCTACTGCCGCAACCTTCGATCCGGTCTGATCTTAAATTGGGAATGAACTC
131 TACGTGCTGTCGATCCTGCTACCGCAACCTTCGATCCGGTCTGATCTTAGACTGGGAATGAACTC
* **
32855839 CGTATGCTTAGGCTGGCGATGAACT-TCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGAC
196 CGTATGCTTAGACTGGCGATGAACTCT-GTATGCCTAAGTCAACCCACCAAACGAGCGTACGGAC
* * ** * * * *
32855903 GCTCAGCCACCCGGAGAGGCCAGTCAAAGATGCATAATGCACAAG-CTGGGGATCAGCCTGGTCC
260 ACTCAGCCACCCAGAGAGGCCAACCAAAGAGGCATAATACACAAGTC-GAGGATCAGCCTAGTCC
**** * * *
32855967 TTTTCTGTGTGCTG-CCATTCCCGTTGCTGGTGCAGCTACCACAA
324 CCCACTGCGTGCTGTCCA-TCCCGCTGCTGGTCCAGCTACCACAA
* * * *
32856011 CCCTCGGTCTGACTGGGGCTTAGACATGGAATAAACTCTGTATGCCTAAGCCAACCCATGAAATG
1 CCCTCGATCCGACTGAGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAATG
* * * * * * *
32856076 AGCGTTCGGGCACTCAGCCGATCAGAGAGGCAGAATGCACAAGCCAGGGATCAGCTCGGTCCCCC
66 AGCGTGCGGGGA-TCAGCCGGTCGGAGAGGCAGAATGCACAAGCCAGGGATCGGCCCGATCCCCC
* * *
32856141 CTACGTGCTGTCGATCTTGCAACCGCAACCCTT-GGTCCGGTCCT-ATCTTAGACTGGGAATGAA
130 CTACGTGCTGTCGATCCTGCTACCGCAA-CCTTCGATCCGGT-CTGATCTTAGACTGGGAATGAA
*
32856204 CTTCGTATGC
193 CTCCGTATGC
32856214 ATAAGTCAAC
Statistics
Matches: 468, Mismatches: 92, Indels: 20
0.81 0.16 0.03
Matches are distributed among these distances:
366 5 0.01
367 290 0.62
368 166 0.35
369 7 0.01
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (367 bp):
CCCTCGATCCGACTGAGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAATG
AGCGTGCGGGGATCAGCCGGTCGGAGAGGCAGAATGCACAAGCCAGGGATCGGCCCGATCCCCCC
TACGTGCTGTCGATCCTGCTACCGCAACCTTCGATCCGGTCTGATCTTAGACTGGGAATGAACTC
CGTATGCTTAGACTGGCGATGAACTCTGTATGCCTAAGTCAACCCACCAAACGAGCGTACGGACA
CTCAGCCACCCAGAGAGGCCAACCAAAGAGGCATAATACACAAGTCGAGGATCAGCCTAGTCCCC
CACTGCGTGCTGTCCATCCCGCTGCTGGTCCAGCTACCACAA
Found at i:32856416 original size:159 final size:156
Alignment explanation
Indices: 32856024--32856465 Score: 413
Period size: 158 Copynumber: 2.8 Consensus size: 156
32856014 TCGGTCTGAC
* * * * * *
32856024 TGGGGCTTAGACATGGAATAAACTCTGTATGCCTAAGCCAACCCATGAAATGAGCGTTCGGGCAC
1 TGGGGCTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGC
* * * * **
32856089 TCAGCCGATC-AGAGAGGCAGAATGCACAAGCCAGGGATCAGCTCGGTCCCCCCTACGTGCTGTC
65 TCAG-CGATCGA-AGAGGCAGAATGCACAAGACGGGGATCGGCTCGGTCCCCCCTGCGTGCTACC
* * ***
32856153 GATCTTGCAACCGCAACCCTTGGTCCGGT
128 GATCTCGCAACCACAACCCTCACTCCGGT
***** * * * * * *
32856182 CCTATCTTAGACTGGGAATGAACTTCGTATGCATAAGTCAACACACGAAACGAGCGTGCAGGCGT
1 TGGGGCTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGC
* * * *
32856247 TGAGCTGATCGAAGAGGCATAATGCACAAGTCGGGGATCGGCTCGGTCCCCCTCTGCATGCTACC
65 TCAGC-GATCGAAGAGGCAGAATGCACAAGACGGGGATCGGCTCGGTCCCCC-CTGCGTGCTACC
**
32856312 GATCTCGCTGCCACAACCCTCACTCCGGT
128 GATCTCGCAACCACAACCCTCACTCCGGT
* * *
32856341 TGGGGCTTAGACGTGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAC-AGGCGAGCGGGTG
1 TGGGGCTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGA-GCGTGCGGGCG
* * * *
32856405 CTCAGTCGATCGAAAAGGTAGAATGCGCAA-ACGGGGATCGGCCCGGTCCCCCCTGCGTGCT
64 CTCAG-CGATCGAAGAGGCAGAATGCACAAGACGGGGATCGGCTCGGTCCCCCCTGCGTGCT
32856466 GTCGATCCTG
Statistics
Matches: 222, Mismatches: 55, Indels: 15
0.76 0.19 0.05
Matches are distributed among these distances:
157 10 0.05
158 110 0.50
159 100 0.45
160 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.19
Consensus pattern (156 bp):
TGGGGCTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCT
CAGCGATCGAAGAGGCAGAATGCACAAGACGGGGATCGGCTCGGTCCCCCCTGCGTGCTACCGAT
CTCGCAACCACAACCCTCACTCCGGT
Found at i:32856754 original size:301 final size:302
Alignment explanation
Indices: 32856185--32856778 Score: 683
Period size: 301 Copynumber: 2.0 Consensus size: 302
32856175 GTCCGGTCCT
* * * *
32856185 ATCTTAGACTGGGAATGAACTTCGTATGCATAAGTCAACACACGAAACGAGCGTGCAGGCGTTGA
1 ATCTTAGACGGGGAATAAACTCCGTATGCATAAGTCAACACACGAAACGAGCGTGCAGGCGCTGA
* * * * * * *
32856250 GCTGATCGAAGAGGCATAATGCACAAGTCGGGGATCGGCTCGGTCCCCCTCTGCATGCTACCGAT
66 GCCGACCGAAGAGGCAAAATGCACAAGTCGAGGATCGACACGATCCCCCTCTGCATGCTACCGAT
* ** * *
32856315 CTCGCTGCCACAACCCTCACTCCGGTTGGGGCTTAGACGTGGAATGAACTCCCTATGCCTAAGCC
131 CCCGCTGCCACAACCCTCACTCCGACTGGGGCTTAGACATAGAATGAACTCCCTATGCCTAAGCC
** * * * * * * ** *
32856380 AACCCACGAAACAGGCGAGCGGGTGCTCAGTCGATCGAAAAGGTAGAATGCGCAAACGGGGATCG
196 AACCCACGAAACAGGCGAGCAAGCGCTCAGTCCAGCCAAAAGGTAAAATACGCAAACAAGGATCA
*
32856445 GCCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTACCAATCTG
261 GCCCGGTCCCCCCTGCATGCTGTCGATCCTGCTACCAATCTG
* * *
32856487 ATCTTAGACGGGGAATAAACTCCGTATGCCTAAGTC-ACCCATGAAACGAGCGTGCAGG-GCCTG
1 ATCTTAGACGGGGAATAAACTCCGTATGCATAAGTCAACACACGAAACGAGCGTGCAGGCG-CTG
* * * * * * * *
32856550 AGCCGACCGGAGAGGCAAAATGCGCAAGTTGAGGATCGACACGATCCCCCTCTGCGTGTTGCTGG
65 AGCCGACCGAAGAGGCAAAATGCACAAGTCGAGGATCGACACGATCCCCCTCTGCATGCTACCGA
** *
32856615 TCCCGCTGCCACAA-CCTCGGTCTGACTGGGGCTTAGACATAGAATGAACTCCCTATGCCTAAGC
130 TCCCGCTGCCACAACCCTCACTCCGACTGGGGCTTAGACATAGAATGAACTCCCTATGCCTAAGC
* * * * *
32856679 CAACCCATGAAACGGGCGTGCAAGCGCTCAG-CCAGCCAGAGAGGTAAAATACGCAAGCCAAGGA
195 CAACCCACGAAACAGGCGAGCAAGCGCTCAGTCCAGCCA-AAAGGTAAAATACGCAA-ACAAGGA
** *
32856743 TCATTCCGGTCCCTCCTGCATGCTGTCGATCCTGCT
258 TCAGCCCGGTCCCCCCTGCATGCTGTCGATCCTGCT
32856779 GCAACCTTCT
Statistics
Matches: 239, Mismatches: 50, Indels: 7
0.81 0.17 0.02
Matches are distributed among these distances:
299 4 0.02
300 83 0.35
301 120 0.50
302 32 0.13
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.19
Consensus pattern (302 bp):
ATCTTAGACGGGGAATAAACTCCGTATGCATAAGTCAACACACGAAACGAGCGTGCAGGCGCTGA
GCCGACCGAAGAGGCAAAATGCACAAGTCGAGGATCGACACGATCCCCCTCTGCATGCTACCGAT
CCCGCTGCCACAACCCTCACTCCGACTGGGGCTTAGACATAGAATGAACTCCCTATGCCTAAGCC
AACCCACGAAACAGGCGAGCAAGCGCTCAGTCCAGCCAAAAGGTAAAATACGCAAACAAGGATCA
GCCCGGTCCCCCCTGCATGCTGTCGATCCTGCTACCAATCTG
Found at i:32856830 original size:26 final size:26
Alignment explanation
Indices: 32856801--32856853 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
32856791 CAGGTCCGAT
* *
32856801 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCAGTATG
* *
32856827 CTTAGAGAGGGGATGAACTCAGTATG
1 CTTAGACAGGGAATGAACTCAGTATG
32856853 C
1 C
32856854 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.17, G:0.30, T:0.25
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCAGTATG
Found at i:32857251 original size:158 final size:158
Alignment explanation
Indices: 32856997--32857376 Score: 374
Period size: 158 Copynumber: 2.4 Consensus size: 158
32856987 CCGACTGGGG
* * * *
32856997 CTTAGACATGGAATGAACTCTGTATGCCTCAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAAC
1 CTTAGAC-TGGAATGAACTCTGTATGCATAAGTCAACCCATGAAACGAGCGTGCAGGCGCTCAAC
* * * * *
32857062 CAGCTAGAGAGGCAAAATGCACAAGCTAGGGATCGGCCCGGTCCCCC-CTTGCGTGCTG-CTGAT
65 CAGCGAGAGAGGCAAAATGCACAAGCCAGGGATCGACCCGGTCCCCCTC-TACGTGCTGTC-AAT
* * *
32857125 CCTGCTACCGT-AACCCTCCATTC-GATCCAAT
128 CCTACTACC-TCAACCCT-CAGTCTAATCCAAT
* * * * *
32857156 CTTAGACTGGAATAAACTCTGTATGCATAAGTCAACCAATGAAACGAGCGTGCAGGCGTTGAGCT
1 CTTAGACTGGAATGAACTCTGTATGCATAAGTCAACCCATGAAACGAGCGTGCAGGCGCTCAAC-
* * * ** * **
32857221 GATCGA-AGAGGCATAATGCGTAAGCCAGGGATCGACTCGGTCTGCCTCTACGTGCTGTCAATCC
65 CAGCGAGAGAGGCAAAATGCACAAGCCAGGGATCGACCCGGTCCCCCTCTACGTGCTGTCAATCC
** *
32857285 TACTGTCTCAACCCTCAGTCTAATTCAAT
130 TACTACCTCAACCCTCAGTCTAATCCAAT
* ** *
32857314 CTCAGACTGGGAATGAACTCCATATGCATAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCA
1 CTTAGACT-GGAATGAACTCTGTATGCATAAGTCAACCCATGAAACGAGCGTGCAGGCGCTCA
32857377 GCCGACTAGA
Statistics
Matches: 179, Mismatches: 36, Indels: 12
0.79 0.16 0.05
Matches are distributed among these distances:
157 5 0.03
158 115 0.64
159 59 0.33
ACGTcount: A:0.27, C:0.28, G:0.23, T:0.21
Consensus pattern (158 bp):
CTTAGACTGGAATGAACTCTGTATGCATAAGTCAACCCATGAAACGAGCGTGCAGGCGCTCAACC
AGCGAGAGAGGCAAAATGCACAAGCCAGGGATCGACCCGGTCCCCCTCTACGTGCTGTCAATCCT
ACTACCTCAACCCTCAGTCTAATCCAAT
Found at i:32858308 original size:26 final size:26
Alignment explanation
Indices: 32858269--32858321 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32858259 CCGATCCGAT
*
32858269 CTTAGACTGAGAATGAACTCTGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
32858295 CTTAGACATG-GAATGAACTCCGTATG
1 CTTAGAC-TGAGAATGAACTCCGTATG
32858321 C
1 C
32858322 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:32858724 original size:159 final size:156
Alignment explanation
Indices: 32858557--32859131 Score: 464
Period size: 159 Copynumber: 3.6 Consensus size: 156
32858547 GACCCAGTCT
* * * **
32858557 CCCT-CTGCGTCCTTTCGATCCTGCTACCACAACCCACGGTCCAACTGGGGCTTAGACATGGAAT
1 CCCTCCTGCGTGCTTTCGATCCTGCTGCCACAACCCACGATCCAACT-AAGCTTAGACATGGAAT
* *
32858621 GTACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTACGGGTGCTCAGTCGGTCGAAGAGGCA
65 GAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTACGGG-GCTCAGTCGGTCGGAGAGGCA
* * *
32858686 GAATGCACAAGTTGGGGATCGGCTTGGTC
129 GAATGCGCAAGCT-GGGATCGGCCTGGTC
* * * * * * *
32858715 CCCTCCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGATCCGATCCAATCTTAGA-TTGGGAA
1 CCCTCCTGCGTGCTTTCGATCCTGCTGCCACAACCCACGATCC-AACTAAGCTTAGACAT-GGAA
* * * * * *
32858779 TGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCAAGCGG-TCAGTCGGTCGGAGAGG
64 TGAACTCCCTATGCCTAAGCCAACCCACGAAACG-G-GTGTACGGGGCTCAGTCGGTCGGAGAGG
* *
32858843 CAGAATGCGCAAGCCAGGGATCGACCTGGTC
127 CAGAATGCGCAAG-CTGGGATCGGCCTGGTC
* * * ** * * * *
32858874 CCC-CTTGCATGCTATCGATCCTGCTGCCGTAA-CCATCGATCTAGTCTAACCTTAGACTTGGAA
1 CCCTCCTGCGTGCTTTCGATCCTGCTGCCACAACCCA-CGATCCA-ACTAAGCTTAGACATGGAA
* * * * * * * * * *
32858937 TGAACTCCGTAAGCCTAAGTCAACCCATGAAATGAGCGTACGGGCACTAAGCCGG-CTGGAGAGG
64 TGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTACGGG-GCTCAGTCGGTC-GGAGAGG
*
32859001 CATAATGCGCAAGCCTGGGATCGGCCTGGTC
127 CAGAATGCGCAAG-CTGGGATCGGCCTGGTC
* * * ** * * *
32859032 CCCTTCTGCGTGC-TGCTGGT-CTCGCTGCCACAACCCTTGGTCCGACTAGGGCTTAGACATGGA
1 CCCTCCTGCGTGCTTTC-GATCCT-GCTGCCACAACCCACGATCCAACTA-AGCTTAGACATGGA
*
32859095 ATGAACTCCCTATGCCCAAGCCAACCCACGAAACGGG
63 ATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGG
32859132 CTGAGGGTGT
Statistics
Matches: 330, Mismatches: 70, Indels: 33
0.76 0.16 0.08
Matches are distributed among these distances:
156 5 0.02
157 4 0.01
158 131 0.40
159 178 0.54
160 6 0.02
161 6 0.02
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.21
Consensus pattern (156 bp):
CCCTCCTGCGTGCTTTCGATCCTGCTGCCACAACCCACGATCCAACTAAGCTTAGACATGGAATG
AACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTACGGGGCTCAGTCGGTCGGAGAGGCAGA
ATGCGCAAGCTGGGATCGGCCTGGTC
Found at i:32858964 original size:158 final size:159
Alignment explanation
Indices: 32858616--32859045 Score: 454
Period size: 158 Copynumber: 2.7 Consensus size: 159
32858606 GCTTAGACAT
* * * * * * * ** ** *
32858616 GGAATGTACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTACGGGTGCTCAGTCGGTCGAAG
1 GGAATGAACTCCGTAAGCCTAAGCCAACCCATGAAATGAGCGTACAAGCACTCAGTCGGTCGGAG
* *** * * *
32858681 AGGCAGAATGCACAAGTTGGGGATCGGCTTGGTCCCCTCCTGCGTGCTGTCGATCCTGCTGCCGC
66 AGGCAGAATGCGCAAGCCAGGGATCGGCCTGGTCCCCTCCTGCATGCTATCGATCCTGCTGCCGC
* * *
32858746 AACCCTCGATCCGATCCAATCTTAGATTG
131 AACCATCGATCAGATCCAACCTTAGATTG
* * **
32858775 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCAAGCGGTCAGTCGGTCGGAG
1 GGAATGAACTCCGTAAGCCTAAGCCAACCCATGAAATGAGCGTACAAGCACTCAGTCGGTCGGAG
* * *
32858840 AGGCAGAATGCGCAAGCCAGGGATCGACCTGGTCCCC-CTTGCATGCTATCGATCCTGCTGCCGT
66 AGGCAGAATGCGCAAGCCAGGGATCGGCCTGGTCCCCTCCTGCATGCTATCGATCCTGCTGCCGC
*
32858904 AACCATCGATCTAG-TCTAACCTTAGACTT-
131 AACCATCGATC-AGATCCAACCTTAGA-TTG
* ** * *
32858933 GGAATGAACTCCGTAAGCCTAAGTCAACCCATGAAATGAGCGTACGGGCACTAAGCCGG-CTGGA
1 GGAATGAACTCCGTAAGCCTAAGCCAACCCATGAAATGAGCGTACAAGCACTCAGTCGGTC-GGA
* * * *
32858997 GAGGCATAATGCGCAAGCCTGGGATCGGCCTGGTCCCCTTCTGCGTGCT
65 GAGGCAGAATGCGCAAGCCAGGGATCGGCCTGGTCCCCTCCTGCATGCT
32859046 GCTGGTCTCG
Statistics
Matches: 226, Mismatches: 41, Indels: 8
0.82 0.15 0.03
Matches are distributed among these distances:
157 1 0.00
158 131 0.58
159 94 0.42
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.21
Consensus pattern (159 bp):
GGAATGAACTCCGTAAGCCTAAGCCAACCCATGAAATGAGCGTACAAGCACTCAGTCGGTCGGAG
AGGCAGAATGCGCAAGCCAGGGATCGGCCTGGTCCCCTCCTGCATGCTATCGATCCTGCTGCCGC
AACCATCGATCAGATCCAACCTTAGATTG
Found at i:32859266 original size:26 final size:26
Alignment explanation
Indices: 32859235--32859287 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
32859225 CCAGTATGAT
* *
32859235 CTTAGAGTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
32859261 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
32859287 C
1 C
32859288 CCAAGTCATC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.13, G:0.30, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:32859987 original size:26 final size:26
Alignment explanation
Indices: 32859951--32860003 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
32859941 CCGGTCCGAT
*
32859951 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
32859977 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
32860003 C
1 C
32860004 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:32860726 original size:157 final size:159
Alignment explanation
Indices: 32860357--32860740 Score: 452
Period size: 159 Copynumber: 2.4 Consensus size: 159
32860347 AACTTCGTTT
*
32860357 GCTTAGACATGGAATGAATTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * *
32860422 CCGGCCAGAGAGGTAGAATGCGTAAGCCAGGGATCGGCCTAGTCCCCCTCTGCGTGCTGCCGGTC
66 CCGGCCAGAGAGGCAAAATGCGCAAGCCAGGGATCGGCCTAGTCCCCCTATGCGTGCTGCCGATC
*
32860487 CTGCTGCCACAACCCTCGGTTTGACTGGG
131 CTGCTGCCACAACCCTCGGTTTGACTGGA
* ** * *
32860516 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCGGGCGTTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * *
32860581 CCGGCCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGTCC-GGT-CCCC-ATGCGTGCTGTCGAT
66 CCGGCCAGAGAGGCAAAATGCGCAAGCCAGGGATCGG-CCTAGTCCCCCTATGCGTGCTGCCGAT
* * *** * *
32860643 CTTGGTGTTGCAACCCTCGGTTTGATTTGA
130 CCTGCTGCCACAACCCTCGGTTTGACTGGA
* * ** * * *
32860673 TCTTAGAC-TAGGAATGAACTCCGTATGCTTAAATCAACCCATGAAATGTGCGTGCGGGTGCTCA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
32860737 GCCG
65 GCCG
32860741 ACCGAAAAGG
Statistics
Matches: 189, Mismatches: 34, Indels: 6
0.83 0.15 0.03
Matches are distributed among these distances:
156 1 0.01
157 89 0.47
158 4 0.02
159 93 0.49
160 2 0.01
ACGTcount: A:0.22, C:0.28, G:0.29, T:0.21
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
CCGGCCAGAGAGGCAAAATGCGCAAGCCAGGGATCGGCCTAGTCCCCCTATGCGTGCTGCCGATC
CTGCTGCCACAACCCTCGGTTTGACTGGA
Found at i:32861079 original size:26 final size:26
Alignment explanation
Indices: 32861027--32861079 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
32861017 CCGATCCGAT
**
32861027 CTTAGACTGGGAATGAACTCTGCATG
1 CTTAGACTGGGAATGAACTCTAAATG
32861053 CTTAGACAT-GGAATGAACTCTAAATG
1 CTTAGAC-TGGGAATGAACTCTAAATG
32861079 C
1 C
32861080 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTAAATG
Found at i:32862091 original size:26 final size:26
Alignment explanation
Indices: 32862062--32862114 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
32862052 CCGGTCCTAT
32862062 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
32862088 CTTAGATTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
32862114 C
1 C
32862115 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:32864518 original size:26 final size:26
Alignment explanation
Indices: 32864489--32864541 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
32864479 GGCTCAAAAT
*
32864489 CTTAGAC-TGTGAAAGAACTCCGTATG
1 CTTAGACATG-GAAAGAACTCCATATG
*
32864515 CTTAGACATGGAATGAACTCCATATG
1 CTTAGACATGGAAAGAACTCCATATG
32864541 C
1 C
32864542 CTAAACCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAAAGAACTCCATATG
Found at i:32864914 original size:159 final size:155
Alignment explanation
Indices: 32864514--32864930 Score: 428
Period size: 159 Copynumber: 2.6 Consensus size: 155
32864504 AACTCCGTAT
*
32864514 GCTTAGACATGGAATGAACTCCATATGCCTAAACCAACCCACGAAACGAGCGA-ACGGGCGCTTA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGC-ATACGGGCGC-TA
* * * ** * *
32864578 GCCAGTCGAAGAGGTAAACACGCAAGCCGAGGATCAGCCCAGTCCCCCTACGTGCTGTCGATCCT
64 ACCAGCCGAAGAGGCAAATGCGCAAGCCGAGGATCGGCCCAGTCCCCCTACGTGCTGTCGATCCC
***
32864643 ACTACCACAACCCTCGGTCTGGTCTAA
129 ACTACCACAACCCTCGGTCTCAACTAA
* * * * * * * *
32864670 TCTTAGAC-TAGGAATGAACTCCATATGCTTAAGTCAACCCGCGAAACGAACGTGCGGGTGCTAA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCATACGGGCGCTAA
* * *
32864734 GCCAGCTGAAGAGGCATAATGCACAAGCCGAGGATCGGCCCGGTCCCTCTCTACGTGCTGTCGAT
65 -CCAGCCGAAGAGGCA-AATGCGCAAGCCGAGGATCGGCCCAGTCCC-C-CTACGTGCTGTCGAT
* **
32864799 CCCACTGCCACAACCCTCGGTC-CAACTGGG
126 CCCACTACCACAACCCTCGGTCTCAACT-AA
* * *
32864829 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATACGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCATACGGGCGCT-AA
* * *
32864894 CCGACCCG-AGAGGCAGAATGCGCAAGTCGGGGATCGG
65 CC-AGCCGAAGAGGCA-AATGCGCAAGCCGAGGATCGG
32864931 TCCGATTCCC
Statistics
Matches: 209, Mismatches: 42, Indels: 17
0.78 0.16 0.06
Matches are distributed among these distances:
155 3 0.01
156 61 0.29
157 25 0.12
158 3 0.01
159 111 0.53
160 6 0.03
ACGTcount: A:0.27, C:0.31, G:0.25, T:0.17
Consensus pattern (155 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCATACGGGCGCTAAC
CAGCCGAAGAGGCAAATGCGCAAGCCGAGGATCGGCCCAGTCCCCCTACGTGCTGTCGATCCCAC
TACCACAACCCTCGGTCTCAACTAA
Found at i:32865017 original size:26 final size:26
Alignment explanation
Indices: 32864988--32865039 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
32864978 CCGGTCTGAT
32864988 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
32865014 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
32865040 TCTAAGTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:32866327 original size:157 final size:156
Alignment explanation
Indices: 32865837--32866336 Score: 480
Period size: 158 Copynumber: 3.2 Consensus size: 156
32865827 ACTCCGTATG
*
32865837 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGATCAA
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGC-ATCAG
* * *
32865901 CCGGTCGGAGAGGCAGAATGTGCAAGTCGGGGATCA-ACTCGGTCCCC-CATGCGTGCTGTTGAT
64 CCGGTCGGAGAGGCAGAATGTGCAAGTCGGGGATCAGCCT-GATCCCCTC-TGTGTGCTG-TGAT
* *
32865964 CCTACTACCGCAACCCTCGGTCCGGTCTGAT
126 CCTACTGCCGCAACCCTCGGTCCGGTCCGAT
* * * * * *
32865995 TTTAGACTGGGAGTGAACTTCGTATGCTTAAGTCAACCCAC-AGAACAAGCGTG-TGGCATCGAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGA-AACAAGCGTGCGGGCATC-AG
** * * * * * *
32866058 CCAATCGAAGAGGCATAATGTGCAAGCCGGGGATC-GACCCGATCCCCCTCTGTATGCTGTCGGT
64 CCGGTCGGAGAGGCAGAATGTGCAAGTCGGGGATCAG-CCTGAT-CCCCTCTGTGTGCTGT-GAT
* * * * * **
32866122 CCCACTGTCACAACCCTCGGTCCAG-CTGGGG
126 CCTACTGCCGCAACCCTCGGTCCGGTC-CGAT
* **
32866153 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCA-TCAG
*
32866217 CCGGCCGGAG-GGCAGAATGCT-CAAGTCGGGGATCAGCCTGATCCCCTCTGTGTGCTGCTGATC
64 CCGGTCGGAGAGGCAGAATG-TGCAAGTCGGGGATCAGCCTGATCCCCTCTGTGTGCTG-TGATC
* *
32866280 CTGCTGCCGCAACCCTCGGTTCGGTCCGAT
127 CTACTGCCGCAACCCTCGGTCCGGTCCGAT
* *
32866310 CTTAGTCTGGGAATGAACTCCATATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
32866337 TTAGACTGGG
Statistics
Matches: 269, Mismatches: 55, Indels: 37
0.75 0.15 0.10
Matches are distributed among these distances:
156 4 0.01
157 99 0.37
158 147 0.55
159 17 0.06
160 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (156 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCATCAGCC
GGTCGGAGAGGCAGAATGTGCAAGTCGGGGATCAGCCTGATCCCCTCTGTGTGCTGTGATCCTAC
TGCCGCAACCCTCGGTCCGGTCCGAT
Found at i:32866346 original size:26 final size:26
Alignment explanation
Indices: 32866310--32866365 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 26
32866300 TCGGTCCGAT
*
32866310 CTTAGTCTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* **
32866336 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
32866362 CTTA
1 CTTA
32866366 AGTCAACCCA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:32867569 original size:721 final size:710
Alignment explanation
Indices: 32866153--32867736 Score: 1774
Period size: 721 Copynumber: 2.2 Consensus size: 710
32866143 CCAGCTGGGG
* * * * *
32866153 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCATTGAG
* * * * * * * *
32866217 CCGGCCGGAGGGCAGAATGCTCAAGTCGGGGATCAGCCTGATCCCCTCTGTGTGCTGCTGATCCT
65 CC-GCCGGAGGGCATAATGCACAAGTCGAGGATCGGCCCGATCCCCCCTATATGCTGCTGATCCT
* * *
32866282 GCTGCCGCAACCCTCGGTTCGGTCCGATCTTAGTCTGGGAATGAACTCCATATGCTTAGACTGGG
129 GCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTAGGAATGAACTCCATATGCTTAGACTGGG
* * * * * * ** * * *
32866347 GATGAACTCTGTATGCTTAAGTCAACCCATGAAACTAGCGTGCGCGTGCTCAGCCGATCGGGGAG
194 GACGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGCGCACGCTCAACCGACCGGAGAG
*
32866412 GCTGACTAGAGAGGCATAATGCGCAAGCCAGGGATCAGCCCAGTCCCCCTCTACATGCTGTCGAT
259 GCTGACTAGAGAGGCATAATGCGCAAGCCAGGGATCAACCCAGTCCCCCTCTACATGCTGTCGAT
* * * * *
32866477 CCCGCTGCCAGTCCTGCTGCCATAACCCTCAGTCTGACTGGGGCTTAGACATGGAATGAACTCCA
324 CCCACTGCCAGTCCTGCTGCCACAACCCTCAGTCCGACCGAGGCTTAGACATGGAATGAACTCCA
* * * *
32866542 TATGCCTAAGCTAACCCACGAAATGAGCGTGCATGCCGAAAAGGTAGAATGCGCAAGCCGGGGAT
389 TATACCTAAGCCAACCCACAAAATGAGCGTGCATGCCGAAAAGGTAGAATGCGCAAGCCGGGCAT
* * * *
32866607 CGACCCGATCCCCCTCTGCGTGCTGCCGATCCTACTGTTGGTGTTGCTACCACAACCCTCAGTCT
454 CGACCCGATCCCCCCCTGCGTGCTGCCGATCCTACTGCTGGTCTTGCTACCACAACCCTCAGTCC
* ** *
32866672 GGTCTGATCTTTGACTGGGAATGAACTCCGTATACTTAGACATTGAATGAACTCCGTATGCCTAA
519 GATCTGATCTTAAACTGGGAATGAACTCCGTATACTTAGACATGGAATGAACTCCGTATGCCTAA
* * *
32866737 GCCAACCCACGAAACGAGCGTACAGGGGCTCAACCAGCTGGAGAGGCAGAATACGCAAGCCGGTG
584 GCCAACCCACGAAACAAGCGTACAGGGACTCAACCAGCTGGAGAGGCAGAATACGCAAGCCGGGG
* * ** ** *
32866802 ATCGACCCGGTCCCCCCTACGTGCTATCGATCCTATTGTCGCAACCCTCGGTCCGATCTGAT
649 ATAGACCCGATCCCCCCTACGTGCTATCGATCCTATACTCGCAACCCTCAATCCGATCCGAT
* * *
32866864 CTTAGACTGGGAATGAACTCTGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGTTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCATTGAGC
*
32866929 CAGCCGAGAGGGCATAATGCACAAGTCGAGGATCGGCCCGGTCCCCCCTATATGCTG-TCGATCC
66 C-GCCG-GAGGGCATAATGCACAAGTCGAGGATCGGCCCGATCCCCCCTATATGCTGCT-GATCC
* * ** ***
32866993 TGCTGCCGGAA-CCTTGGTCCGGTTTGATCTTAGACTAGGAATGAACTTTGTATGCTTAGACTGG
128 TGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTAGGAATGAACTCCATATGCTTAGACTGG
*
32867057 GGACGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGC-CAACGCTTAACCGACCGGAG
193 GGACGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGCGC-ACGCTCAACCGACCGGAG
* * * * ** *
32867121 AGGGC-GA-TCGGATATGCATAATGCGCAAG-CTGAGGATCAACCTGGTCCCCCTCTACGTGCTG
257 A-GGCTGACT-AGAGAGGCATAATGCGCAAGCCAG-GGATCAACCCAGTCCCCCTCTACATGCTG
* *
32867183 TCGATCCTACTGCCAGTCTTGCTG-CACAACCCTCAGTCCGACCGAGGCTTAGACATGGAATGAA
319 TCGATCCCACTGCCAGTCCTGCTGCCACAACCCTCAGTCCGACCGAGGCTTAGACATGGAATGAA
* * *
32867247 CTCCGTATACCTAAGCCAACCCACAAAATGAGCGTGCAGGTGCTTAACTGGCCGGAGAGGTAGAA
384 CTCCATATACCTAAGCCAACCCACAAAATGA----GC--GTGC---A-T-GCCGAAAAGGTAGAA
* * * * * *
32867312 TGCGCAAGCCTGGCATCGACCCGGTCCCCCCCTGCGTGCTGTCGATTCTGCTGCTGGTCTTGCTG
438 TGCGCAAGCCGGGCATCGACCCGATCCCCCCCTGCGTGCTGCCGATCCTACTGCTGGTCTTGCTA
** * ** ** *
32867377 CTGCACCCCTTGGTCCGATCTGATCTTAAACTGGGAATGAACTTTGTATGCTTAGACATGGAATG
503 CCACAACCCTCAGTCCGATCTGATCTTAAACTGGGAATGAACTCCGTATACTTAGACATGGAATG
* * * *
32867442 AACTCCGTATGCCTAAGCCAACCCATGAAACAAGTGTGC-GGGCACTCAACC-GGTCGGAGAGGC
568 AACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTACAGGG-ACTCAACCAGCT-GGAGAGGC
* * *
32867505 AGAATGCGCAAGCCGGGGATAGGCCCGATCCCCCTTACGTGC-AGTCGATCCTACTACT-GCAAC
631 AGAATACGCAAGCCGGGGATAGACCCGATCCCCCCTACGTGCTA-TCGATCCTA-TACTCGCAAC
32867568 CCTCAATCCGATCCGAT
694 CCTCAATCCGATCCGAT
* * * * *
32867585 CTTAAACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTACGGGCATTGAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCATTGAGC
** * * * * * * * * *
32867650 CGACCGGAGAGGCATAATGCGTAAGCCTAGGATCGGCCC-AGTCTCTCTCTACATGTTACCGGTC
66 CG-CCGGAG-GGCATAATGCACAAGTCGAGGATCGGCCCGA-TC-CCCCCTATATGCTGCTGATC
32867714 CTGCTGCC-CAACCCTCGGTCCGG
127 CTGCTGCCGCAACCCTCGGTCCGG
32867737 CTGGGGTTAG
Statistics
Matches: 722, Mismatches: 123, Indels: 45
0.81 0.14 0.05
Matches are distributed among these distances:
710 68 0.09
711 221 0.31
712 59 0.08
714 2 0.00
716 4 0.01
719 1 0.00
720 11 0.02
721 324 0.45
722 32 0.04
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (710 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCATTGAGC
CGCCGGAGGGCATAATGCACAAGTCGAGGATCGGCCCGATCCCCCCTATATGCTGCTGATCCTGC
TGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTAGGAATGAACTCCATATGCTTAGACTGGGGA
CGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGCGCACGCTCAACCGACCGGAGAGGC
TGACTAGAGAGGCATAATGCGCAAGCCAGGGATCAACCCAGTCCCCCTCTACATGCTGTCGATCC
CACTGCCAGTCCTGCTGCCACAACCCTCAGTCCGACCGAGGCTTAGACATGGAATGAACTCCATA
TACCTAAGCCAACCCACAAAATGAGCGTGCATGCCGAAAAGGTAGAATGCGCAAGCCGGGCATCG
ACCCGATCCCCCCCTGCGTGCTGCCGATCCTACTGCTGGTCTTGCTACCACAACCCTCAGTCCGA
TCTGATCTTAAACTGGGAATGAACTCCGTATACTTAGACATGGAATGAACTCCGTATGCCTAAGC
CAACCCACGAAACAAGCGTACAGGGACTCAACCAGCTGGAGAGGCAGAATACGCAAGCCGGGGAT
AGACCCGATCCCCCCTACGTGCTATCGATCCTATACTCGCAACCCTCAATCCGATCCGAT
Found at i:32867883 original size:157 final size:155
Alignment explanation
Indices: 32867426--32867926 Score: 447
Period size: 158 Copynumber: 3.2 Consensus size: 155
32867416 AACTTTGTAT
* ** *
32867426 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGTGTGCGG-GCACTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGAG--CTCA
* * * * * *
32867490 ACCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATAGGCCCGATCC-CCCTTACGTGCAGTCGAT
64 ACCGCT-GGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCTCCC-TACATGCTGCCGAT
* * *
32867554 CCTACTACTGCAACCCTCAATCCGATCCGA
127 CCTACTGC-GCAACCCTCGATCCGAGCCGA
* * * * * *
32867584 TCTTAAAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTACGG-GCATTG
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGAGC--TC
* * * ** * * * * *
32867647 AACCGACCGGAGAGGCATAATGCGTAAGCCTAGGATCGGCCCAGTCTCTCTCTACATGTTACCGG
63 AACCG-CTGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTC-CTCCCTACATGCTGCCGA
* * * * *
32867712 TCCTGCTGCCCAACCCTCGGTCCG-GCTGG
126 TCCTACTGCGCAACCCTCGATCCGAGCCGA
* * * *
32867741 GGTTAGACATGGAATGAACTCCCTATGCCTAAGCCATCCCACGAAATGGGCGTGCAGGAGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGC-GGAGCTCAA
* *
32867806 CCAGCTGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGGTCCTCCCTGCATGCTGCCGATCC
65 CC-GCTGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCTCCCTACATGCTGCCGATCC
*
32867871 TACTGTCGCAACCCTCGATCCGATCCGA
129 TACTG-CGCAACCCTCGATCCGAGCCGA
* *
32867899 TCTTAGAC-TGGGAATGAACTTCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
32867927 TTAGACTAGG
Statistics
Matches: 264, Mismatches: 66, Indels: 26
0.74 0.19 0.07
Matches are distributed among these distances:
156 21 0.08
157 100 0.38
158 124 0.47
159 17 0.06
160 2 0.01
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (155 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGAGCTCAAC
CGCTGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCTCCCTACATGCTGCCGATCCTA
CTGCGCAACCCTCGATCCGAGCCGA
Found at i:32867941 original size:26 final size:26
Alignment explanation
Indices: 32867900--32867952 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32867890 CCGATCCGAT
*
32867900 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
32867926 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
32867952 C
1 C
32867953 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:32871042 original size:157 final size:157
Alignment explanation
Indices: 32870533--32871420 Score: 599
Period size: 158 Copynumber: 5.6 Consensus size: 157
32870523 TCGCCCGTTC
* * *
32870533 GATCCTCGGCTTGCGCATCT-TG-CTCTCTG-GTCGGCTGAGCGCCCGTACGCTCGTTTCGTGGG
1 GATCCTCGGCTTGCGCAT-TATGCCTCTCCGACT-GGCTGAGCGCCCGCACGCTCGTTTCGTGGG
* * * * * *
32870595 TTGACTTAGGCATACAGAGTTCATCCCCA-ATCTAAGATCAAACTGGACTGAGGTTTACGGCAGT
64 TTGACTTAGGCATACGGAGTTCAT-TCCATGTCTAAGATCAGACTGGAC-GAGGGTTACGGCAGC
* * * * *
32870659 AGGATCGATAGCACGAAGGGGGGATCGAGCC
127 AAGATCGATAGCACGTAGGAGGGATCGGGCT
* * * * * * * *
32870690 GATCTTCGGCTTGTGCATTCTGCCTCTCCGACCGGTTGAGCACCCGTATC-CT-GTTTCATGGGT
1 GATCCTCGGCTTGCGCATTATGCCTCTCCGACTGGCTGAGCGCCCGCA-CGCTCGTTTCGTGGGT
* ** * ** * ** *
32870753 TGGCTTAGGCATTGGGAGTTCATTCTATGTCTAAGCCCCA-ACTGGACTGAGGGCTGTGGAAGCA
65 TGACTTAGGCATACGGAGTTCATTCCATGTCTAAG-ATCAGACTGGAC-GAGGGTTACGGCAGCA
* *
32870817 AGACCGATAGCACGTGAAGAGGGA-CTGGG-T
128 AGATCGATAGCACGT-AGGAGGGATC-GGGCT
* ** * *
32870847 CGATCC-CTGGCTTGCACATTATAACTCTCCGACCGGCTGAGCGCCCGCACGCTCATTTCGTGGG
1 -GATCCTC-GGCTTGCGCATTATGCCTCTCCGACTGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
* * *
32870911 TTAACTTAGGCATACGGAGTTCATTCCA-GTCTAAGATCAGACTAGATCGAGGGTTACGGTAGCA
64 TTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGATCAGACTGGA-CGAGGGTTACGGCAGCA
* *
32870975 AGATCGGTAGCACGTATGAGGGA-CTGGGCT
128 AGATCGATAGCACGTAGGAGGGATC-GGGCT
* * * * *
32871005 GATCCTCAGCTTGCGCATGT-TGCCTCTCCGACTGGCTGAGTGCCCGCATGCCCGTTTCGCGGGT
1 GATCCTCGGCTTGCGCAT-TATGCCTCTCCGACTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
* * ** ** ** *
32871069 TGGCTTAGGCATA-GCGAGTTCATTCCATATCTAAGCCCCAG-CCAGATCGAGGGTTGTGACAGC
65 TGACTTAGGCATACG-GAGTTCATTCCATGTCTAAG-ATCAGACTGGA-CGAGGGTTACGGCAGC
* * * * * *
32871132 AACATCGACAGCATGCAGAAGGGGATCGGGCC
127 AAGATCGATAGCACGTAGGA-GGGATCGGGCT
** * * * * * *
32871164 GATCCTCAACTTGCGCATTATACCTCTTCGGCTGGCTCAGCGCCCGCACCCTCGTTTCTTGGGTT
1 GATCCTCGGCTTGCGCATTATGCCTCTCCGACTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
* * * *
32871229 GACTTAGGCATACGAAGTTCATTCCCA-GTCTAAGATC-GAATCGGACCAAGGGTTACGACAGCA
66 GACTTAGGCATACGGAGTTCATT-CCATGTCTAAGATCAGACT-GGA-CGAGGGTTACGGCAGCA
* * * *
32871292 AGGTCGACAGTACGTAGGGGGGATCGGG-T
128 AGATCGATAGCACGTAGGAGGGATCGGGCT
* * * * * * ** * *
32871321 CGATCCTTGGCTTACACATTCTGCCTCTTCGA-TCGGCTGAGCTCCCATACGCTCATTTCATGGG
1 -GATCCTCGGCTTGCGCATTATGCCTCTCCGACT-GGCTGAGCGCCCGCACGCTCGTTTCGTGGG
* * *
32871385 TTGGCTTAGGCATATGGAGTTCATTCCACGTCTAAG
64 TTGACTTAGGCATACGGAGTTCATTCCATGTCTAAG
32871421 CATATGGAGT
Statistics
Matches: 568, Mismatches: 133, Indels: 59
0.75 0.17 0.08
Matches are distributed among these distances:
156 4 0.01
157 178 0.31
158 232 0.41
159 149 0.26
160 5 0.01
ACGTcount: A:0.20, C:0.26, G:0.28, T:0.25
Consensus pattern (157 bp):
GATCCTCGGCTTGCGCATTATGCCTCTCCGACTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
GACTTAGGCATACGGAGTTCATTCCATGTCTAAGATCAGACTGGACGAGGGTTACGGCAGCAAGA
TCGATAGCACGTAGGAGGGATCGGGCT
Found at i:32871104 original size:316 final size:315
Alignment explanation
Indices: 32870564--32871421 Score: 795
Period size: 316 Copynumber: 2.7 Consensus size: 315
32870554 GCTCTCTGGT
* * * *
32870564 CGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAATCTA
1 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT-TCCAGTCTA
* * * * *
32870629 AGATCAAACTGGACTGAGGTTTACGGCAGTAGGATCGATAGCACGAAGGGGGGATCGAGCCGATC
65 AGATCAAACTAGACTGAGGGTTACGGCAGCAAGATCGATAGCACGAAGGAGGGATCGAGCCGATC
* * * * * * *
32870694 TTCGGCTTGTGCATTCTGCCTCTCCGACCGGTTGAGCACCCGTATCCTGTTTCATGGGTTGGCTT
130 CTCAGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCACCCGCATCCCGTTTCACGGGTTGGCTT
* * * * ** *
32870759 AGGCATTGGGAGTTCATTCTATGTCTAAGCCCCAACTGGA-CTGAGGGCTGTGGA-AGCAAGACC
195 AGGCATAGCGAGTTCATTCCATATCTAAGCCCCAACCAGATC-GAGGGCTGT-GACAGCAACACC
* * * **
32870822 GATAGCACG-TGAAGAGGGA-CTGGGTCGATCC-CTGGCTTGCACATTATAACTCTCCGAC
258 GACAGCACGCAGAAG-GGGATC-GGGCCGATCCTC-AACTTGCACATTATAACTCTCCGAC
* *
32870880 CGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCAGTCTAA
1 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCAGTCTAA
* * * * * * *
32870945 GATCAGACTAGA-TCGAGGGTTACGGTAGCAAGATCGGTAGCACGTATGAGGGA-CTGGGCTGAT
66 GATCAAACTAGACT-GAGGGTTACGGCAGCAAGATCGATAGCACGAAGGAGGGATC-GAGCCGAT
* ** *
32871008 CCTCAGCTTGCGCATGT-TGCCTCTCCGACTGGCTGAGTGCCCGCATGCCCGTTTCGCGGGTTGG
129 CCTCAGCTTGCGCAT-TCTGCCTCTCCGACCGGCTGAGCACCCGCAT-CCCGTTTCACGGGTTGG
* * *
32871072 CTTAGGCATAGCGAGTTCATTCCATATCTAAGCCCCAGCCAGATCGAGGGTTGTGACAGCAACAT
192 CTTAGGCATAGCGAGTTCATTCCATATCTAAGCCCCAACCAGATCGAGGGCTGTGACAGCAACAC
* * * * *
32871137 CGACAGCATGCAGAAGGGGATCGGGCCGATCCTCAACTTGCGCATTATACCTCTTCGGC
257 CGACAGCACGCAGAAGGGGATCGGGCCGATCCTCAACTTGCACATTATAACTCTCCGAC
* * * * *
32871196 TGGCTCAGCGCCCGCACCCTCGTTTCTTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTA
1 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCAGTCTA
* * ** * * * * * * * *
32871261 AGATCGAA-TCGGACCAAGGGTTACGACAGCAAGGTCGACAGTACGTAGGGGGGATCGGGTCGAT
65 AGATCAAACT-AGACTGAGGGTTACGGCAGCAAGATCGATAGCACGAAGGAGGGATCGAGCCGAT
** * * * * * * *
32871325 CCTTGGCTTACACATTCTGCCTCTTCGATCGGCTGAGC-TCC-CATACGCTCATTTCATGGGTTG
129 CCTCAGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCACCCGCAT-C-C-CGTTTCACGGGTTG
**
32871388 GCTTAGGCATATG-GAGTTCATTCCACGTCTAAGC
191 GCTTAGGCATA-GCGAGTTCATTCCATATCTAAGC
32871422 ATATGGAGTT
Statistics
Matches: 439, Mismatches: 86, Indels: 33
0.79 0.15 0.06
Matches are distributed among these distances:
314 2 0.00
315 97 0.22
316 210 0.48
317 128 0.29
318 2 0.00
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.25
Consensus pattern (315 bp):
CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCAGTCTAA
GATCAAACTAGACTGAGGGTTACGGCAGCAAGATCGATAGCACGAAGGAGGGATCGAGCCGATCC
TCAGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCACCCGCATCCCGTTTCACGGGTTGGCTTA
GGCATAGCGAGTTCATTCCATATCTAAGCCCCAACCAGATCGAGGGCTGTGACAGCAACACCGAC
AGCACGCAGAAGGGGATCGGGCCGATCCTCAACTTGCACATTATAACTCTCCGAC
Found at i:32871424 original size:26 final size:26
Alignment explanation
Indices: 32871394--32871446 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
32871384 GTTGGCTTAG
32871394 GCATATGGAGTTCATT-CCACGTCTAA
1 GCATATGGAGTTCATTCCCA-GTCTAA
32871420 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
32871446 G
1 G
32871447 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:32871792 original size:26 final size:26
Alignment explanation
Indices: 32871761--32871813 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
32871751 GTTGACTTAG
32871761 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
32871787 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
32871813 G
1 G
32871814 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:32871822 original size:367 final size:343
Alignment explanation
Indices: 32871309--32872130 Score: 882
Period size: 355 Copynumber: 2.3 Consensus size: 343
32871299 CAGTACGTAG
** * * ** * * *
32871309 GGGGGATCGGG-TCGATCCTTGGCTTACACATTCTGCCTCTTCGATCGGCTGAGCTCCCATACGC
1 GGGGGATCGGGCT-GATCCCCGGCTTGCACATTATGCCTCTTCGGCCGACTGAGCGCCCGTACGC
* *
32871373 TCATTTCATGGGTTGGCTTAGGCATATGGAGTTCATT-CCACGTCTAAGCATATGGAGTTCATTC
65 TCATTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCCA-GTCTAAGCATACGGAGTTCATTC
** * * *
32871437 CCAGTCTAAGATCAGACCGGGTCGAGGGTTGCGACAGCAGGACCAGCAGTAAGATTGACAGTACA
129 CCAGTCTAAGATCAGACCGGACCAAGGGTT------GC--GA-CAGCAG---GATCGACAGCACA
* * * * *
32871502 CAGAGGGGACCAAACCGATCCCCGACTTGCGTATTCTGCCTCTCCGACCGGCTGGGCGCCCGCAC
182 CAGAGGGGACCAAACCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCAGCTGAGCACCCACAC
* *
32871567 GCTCGTT-TCATGGGTTGGTTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCC-AGACC
247 GCCCGTTCT-ATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGA-ACC
* *
32871630 GAGGGTTGTGGTAGCAGG-ACCTGCAGCGGGATCGACAGCA
310 GAGGGTTGTGGCAGC-GGAACCAGCAGC---A-CG-CAG-A
*
32871670 CGCATAGCGGGATCGGGCTGATCCCCGGCTTGCATATTATGCCTCTTCGGCCGACTGAGCGCCCG
1 -G----G-GGGATCGGGCTGATCCCCGGCTTGCACATTATGCCTCTTCGGCCGACTGAGCGCCCG
** * *
32871735 TACGCTCGGTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGGAGTTC
60 TACGCTCATTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
* *
32871800 ATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGACAGCAGGATCGACAGCACGCAGGGGGG
125 ATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGACAGCAGGATCGACAGCACACAGAGGGG
* ** * * *
32871865 ACTAGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGATCAGCTGAGCACCCACACGCCCGTTC
190 ACCAAACCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCAGCTGAGCACCCACACGCCCGTTC
* * *
32871930 TGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACTGAGGGTTGTG
255 TATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCGAGGGTTGTG
32871995 GCAGCGGAACCAGCAGCACGCAGA
320 GCAGCGGAACCAGCAGCACGCAGA
** * * * *
32872019 GGGGGATCGGGCCAATCCCCCGCTTGCGCATTATGCCTCTTCGGCC-AGCTCAGCGCCCGCACGC
1 GGGGGATCGGGCTGATCCCCGGCTTGCACATTATGCCTCTTCGGCCGA-CTGAGCGCCCGTACGC
***
32872083 TCATTTCATGGGTTGACTTATTTATATGGAGTTCATTCCCAGTCTAAG
65 TCATTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAG
32872131 ATCAGTCCGG
Statistics
Matches: 394, Mismatches: 55, Indels: 41
0.80 0.11 0.08
Matches are distributed among these distances:
342 1 0.00
343 94 0.24
344 1 0.00
348 1 0.00
349 1 0.00
350 3 0.01
351 2 0.01
352 1 0.00
354 2 0.01
355 139 0.35
356 2 0.01
358 6 0.02
359 2 0.01
361 2 0.01
362 1 0.00
366 1 0.00
367 131 0.33
368 4 0.01
ACGTcount: A:0.20, C:0.28, G:0.28, T:0.23
Consensus pattern (343 bp):
GGGGGATCGGGCTGATCCCCGGCTTGCACATTATGCCTCTTCGGCCGACTGAGCGCCCGTACGCT
CATTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCC
AGTCTAAGATCAGACCGGACCAAGGGTTGCGACAGCAGGATCGACAGCACACAGAGGGGACCAAA
CCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCAGCTGAGCACCCACACGCCCGTTCTATGGG
TTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCGAGGGTTGTGGCAGCG
GAACCAGCAGCACGCAGA
Found at i:32872149 original size:159 final size:157
Alignment explanation
Indices: 32871787--32872185 Score: 360
Period size: 159 Copynumber: 2.5 Consensus size: 157
32871777 CCCAATCTAA
* * * * *
32871787 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGACAGCAGGATCGACA
1 GCATAGGGAGTTCATTCCCAGTCTAAGATCAG-CCGGAACTAGGGTTGCGACAGCAGGAACCACA
* ** * * *
32871852 GCACGCAGGGGGGACTAGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGATCAGCTGAGCACC
65 GCACGCAGGGGGGACTAGGCCAATCCCCCGCTTGCGCATTATGCCTCTCCGACCAGCTCAGCACC
* * *
32871917 CACACGCCCGTTCTGTGGGTTGGCTTAG
130 CACACGCCAGTTCTATGGGTTGACTTAG
** * *
32871945 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAGCC-GAACTGAGGGTTGTGGCAGC-GGAACCA
1 GCATAGGGAGTTCATTCCCA-GTCTAAG-ATCAGCCGGAACT-AGGGTTGCGACAGCAGGAACCA
* * *
32872007 GCAGCACGCAGAGGGGGA-TCGGGCCAATCCCCCGCTTGCGCATTATGCCTCTTCGGCCAGCTCA
63 -CAGCACGCAG-GGGGGACT-AGGCCAATCCCCCGCTTGCGCATTATGCCTCTCCGACCAGCTCA
* * * *
32872071 GCGCCCGCACGCTCATTTC-ATGGGTTGACTTAT
125 GCACCCACACGC-CAGTTCTATGGGTTGACTTAG
** * * * *
32872104 TTATATGGAGTTCATTCCCAGTCTAAGATCAGTCCGGAGCTAGGGTTGC-AGCAGCAGGATCGAC
1 GCATAGGGAGTTCATTCCCAGTCTAAGATCAG-CCGGAACTAGGGTTGCGA-CAGCAGGAACCAC
* *
32872168 AGCATGAAGGGTGGGACT
64 AGCACGCAGGG-GGGACT
32872186 GGGTTGATCC
Statistics
Matches: 190, Mismatches: 37, Indels: 26
0.75 0.15 0.10
Matches are distributed among these distances:
157 11 0.06
158 52 0.27
159 110 0.58
160 17 0.09
ACGTcount: A:0.21, C:0.28, G:0.30, T:0.21
Consensus pattern (157 bp):
GCATAGGGAGTTCATTCCCAGTCTAAGATCAGCCGGAACTAGGGTTGCGACAGCAGGAACCACAG
CACGCAGGGGGGACTAGGCCAATCCCCCGCTTGCGCATTATGCCTCTCCGACCAGCTCAGCACCC
ACACGCCAGTTCTATGGGTTGACTTAG
Found at i:32872307 original size:26 final size:26
Alignment explanation
Indices: 32872264--32872316 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
32872254 GTTGGCTTAG
* **
32872264 GCATACGGAGTTCATTCCTTGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
* *
32872290 GCATACGTAGCTCTTTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
32872316 G
1 G
32872317 ATTTTGAGCC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.23, C:0.26, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAGTCTAA
Found at i:32872792 original size:25 final size:26
Alignment explanation
Indices: 32872740--32872795 Score: 71
Period size: 25 Copynumber: 2.2 Consensus size: 26
32872730 CTCTTTCTAA
* *
32872740 AAAAATTTTAAAAAATCTTGAACCAT
1 AAAAATTTTAAAAAATCGTGAACAAT
32872766 AAAAATTTT-AAAAATCGTGAGA-AAT
1 AAAAATTTTAAAAAATCGTGA-ACAAT
32872791 AAAAA
1 AAAAA
32872796 ACGGGTCATC
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
25 17 0.63
26 10 0.37
ACGTcount: A:0.59, C:0.07, G:0.07, T:0.27
Consensus pattern (26 bp):
AAAAATTTTAAAAAATCGTGAACAAT
Found at i:32872795 original size:26 final size:27
Alignment explanation
Indices: 32872739--32872796 Score: 68
Period size: 26 Copynumber: 2.2 Consensus size: 27
32872729 ACTCTTTCTA
* *
32872739 AAAAAATTTTAAAAAATCTTGAACCAT
1 AAAAAATTTTAAAAAATCGTGAACAAT
32872766 -AAAAATTTT-AAAAATCGTGAGA-AAT
1 AAAAAATTTTAAAAAATCGTGA-ACAAT
32872791 AAAAAA
1 AAAAAA
32872797 CGGGTCATCT
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
25 12 0.44
26 15 0.56
ACGTcount: A:0.60, C:0.07, G:0.07, T:0.26
Consensus pattern (27 bp):
AAAAAATTTTAAAAAATCGTGAACAAT
Found at i:32873392 original size:159 final size:159
Alignment explanation
Indices: 32873059--32873523 Score: 388
Period size: 159 Copynumber: 2.9 Consensus size: 159
32873049 ATCGGACTAG
* * * * ** ** * *
32873059 ACCGAGGGTTGCGGTAGCGGGATCGACAGCACGCAG-GGGGGACCGGGTTGATCCCCGACTTGCG
1 ACCGAGGGTTGCGGCAGCAGGACCGACAGCACGCAGAGGGCGACTAGGTCAATCCCCAACTTACG
* * * * * * * * *
32873123 CATTC-TGCCTCTCCGACCAGCTGACCACCCGAATGCCCATTTCGTGGGTTGGCTTAGGCATA-G
66 CA-TCATGCCTCTCCGACCGGCTCAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACG
* ***
32873186 CAAGTTCACTCCATGTCTAAGCCCCA-ACTGG-
130 -AAGTTCATTCCATGTCTAA-AATCAGAC-GGA
* ** * * **
32873217 ACTGAGGGTTTTGGCAGC-GAGACCGACAGCAGGCAGAGGGCGA-TCGGGTCAATCCTTAACTTA
1 ACCGAGGGTTGCGGCAGCAG-GACCGACAGCACGCAGAGGGCGACT-AGGTCAATCCCCAACTTA
* * * * * **
32873280 CGCATTATGCCTTTTCGACCGGCTCAGCGCTCGCACGCTCGTTTTGTGGGTTGACTTAGGCATAC
64 CGCATCATGCCTCTCCGACCGGCTCAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATAC
32873345 GAAGTTCATTCCCA-GTCTAAAATCAGACGGA
129 GAAGTTCATT-CCATGTCTAAAATCAGACGGA
* * * ** *
32873376 ACCGAGGGTTGCGGCAGCAGGATCGACAGCACGTAGAGGGGGACTAGGTCGGTCCCCGACTTACG
1 ACCGAGGGTTGCGGCAGCAGGACCGACAGCACGCAGAGGGCGACTAGGTCAATCCCCAACTTACG
* * * *
32873441 CATCCTGCCTCTCCGGCTGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGA
66 CATCATGCCTCTCCGACCGGCTCAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGA
32873506 AGTTCATTCCATGTCTAA
131 AGTTCATTCCATGTCTAA
32873524 GCATACGGAG
Statistics
Matches: 240, Mismatches: 56, Indels: 21
0.76 0.18 0.07
Matches are distributed among these distances:
157 1 0.00
158 36 0.15
159 197 0.82
160 6 0.03
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.22
Consensus pattern (159 bp):
ACCGAGGGTTGCGGCAGCAGGACCGACAGCACGCAGAGGGCGACTAGGTCAATCCCCAACTTACG
CATCATGCCTCTCCGACCGGCTCAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGA
AGTTCATTCCATGTCTAAAATCAGACGGA
Found at i:32873528 original size:26 final size:26
Alignment explanation
Indices: 32873498--32873550 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
32873488 GTTGACTTAG
*
32873498 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTAATTCCCA-GTCTAA
*
32873524 GCATACGGAGTTAATTCCCAGTCTAA
1 GCATACGAAGTTAATTCCCAGTCTAA
32873550 G
1 G
32873551 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTAATTCCCAGTCTAA
Found at i:32873698 original size:184 final size:185
Alignment explanation
Indices: 32873339--32873707 Score: 442
Period size: 184 Copynumber: 2.0 Consensus size: 185
32873329 GTTGACTTAG
* *
32873339 GCATACGAAGTTCATTCCCAGTCTAAAATCAGACGGAACCGAGGGTTGCGGCAGCAGGATCGACA
1 GCATACGAAGTTAATTCCCAGTCTAAAATCAGACGGAACCAAGGGTTGCGGCAGCAGGATCGACA
** * * * * * * * *
32873404 GCACGTAGAGGGGGACTAGGTCGGTCCCCGACTTACGCATCCTGCCTCTCCGGCTGGCTGAGCGC
66 GCACACAGAGGGGGACGAGGCCGATCCCCGACTTACGAATCCTACCTCTCCAGCCGGCTGAGCAC
32873469 CCGCACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCATGTCTAA
131 CCGCACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCATGTCTAA
* * * *
32873524 GCATACGGAGTTAATTCCCAGTCTAAGATCGGATCGG-ACCAAGGGTTGTGGCAGCAGGATCGAC
1 GCATACGAAGTTAATTCCCAGTCTAAAATCAGA-CGGAACCAAGGGTTGCGGCAGCAGGATCGAC
* * * * *
32873588 AGCACACAG-GGGGGACCGA-GCCGATCCCTGGCTTGCGAATTCTACCTCTCTAGCCGGCTGAGC
65 AGCACACAGAGGGGGA-CGAGGCCGATCCCCGACTTACGAATCCTACCTCTCCAGCCGGCTGAGC
* * * *
32873651 ACCCGCACG-TCCGTTTCATGGGTTGGCTTAGGCATAGGGCA-TTCATTCCATGTCTAA
129 ACCCGCACGCT-CATTTCATGGGTTGACTTAGGCATA-CGAAGTTCATTCCATGTCTAA
32873708 ACCCCAGCCG
Statistics
Matches: 155, Mismatches: 25, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
183 1 0.01
184 86 0.55
185 65 0.42
186 3 0.02
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.22
Consensus pattern (185 bp):
GCATACGAAGTTAATTCCCAGTCTAAAATCAGACGGAACCAAGGGTTGCGGCAGCAGGATCGACA
GCACACAGAGGGGGACGAGGCCGATCCCCGACTTACGAATCCTACCTCTCCAGCCGGCTGAGCAC
CCGCACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCATGTCTAA
Found at i:32874402 original size:26 final size:26
Alignment explanation
Indices: 32874366--32874418 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
32874356 GTTGACTTAG
32874366 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
32874392 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
32874418 G
1 G
32874419 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:32876001 original size:26 final size:26
Alignment explanation
Indices: 32875972--32876024 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
32875962 GTTGGCTTAG
32875972 GCATACGGAGTTCATTCC-ACGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
32875998 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
32876024 G
1 G
32876025 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:32876372 original size:26 final size:26
Alignment explanation
Indices: 32876336--32876386 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
32876326 GTTGACTTAG
32876336 GCATACGGAGTTCATCCCCAGTCTAT
1 GCATACGGAGTTCATCCCCAGTCTAT
*
32876362 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATCCCCAGTCTA
32876387 AGATCAGACC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAT
Found at i:32877278 original size:158 final size:158
Alignment explanation
Indices: 32876726--32877291 Score: 519
Period size: 158 Copynumber: 3.6 Consensus size: 158
32876716 GCCACCCGTT
* ** * ** * * *
32876726 CGATCCCCAGCTTATGCATCCTGCCTCACTGGTCGGCTGAGCACTCGCACGCTCATTTCGTGGGT
1 CGATCCCCGGCTTGCGCATTCTGCCTTTCTGGCCGGCTGAGCACCCGCACGCTCATTTCATGGGT
** * *
32876791 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAAATCGAGGGTTACAGTAGCAG
66 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTATAGTAGCAG
* * * * *
32876856 GATCGGCAGCATGTAGGGGGGATCGGGT
131 GATCGACAGCATGCAGGGGGGACCGAGC
* * * * *
32876884 CGATCCCTGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGC-CAATTTCATGGG
1 CGATCCCCGGCTTGCGCATTCTGCCTTTCTGGCCGGCTGAGCACCCGCACGCTC-ATTTCATGGG
* * * ** ** * * *
32876948 TTGGCTTAGGCATAGGGAGTTCATT-CTATGTCTAAGCCCCAG-CTGGATCGAGGGTTGTGGCAG
65 TTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCAGATCGAGGGTTATAGTAG
* * *
32877011 CGGGACCGACAGCATACAGAGGGGGACCGAGC
128 CAGGATCGACAGCATGCAG-GGGGGACCGAGC
* * * * * * *** *
32877043 CAATCCCCTGCTTGCGCATTATGCCTTTCTGGTCAGCTCAATGCCCGCACGCTCGTTTCATGGGT
1 CGATCCCCGGCTTGCGCATTCTGCCTTTCTGGCCGGCTGAGCACCCGCACGCTCATTTCATGGGT
* * * *
32877108 TGACTTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTATAGTAGTAG
66 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTATAGTAGCAG
* * *
32877173 GATTGACAGCACGCAGGGGGGACCAAGC
131 GATCGACAGCATGCAGGGGGGACCGAGC
* * * * * * *
32877201 CGATCCCCGGCTTGCACATTCTACCTTTCTGGCCGGTTGAGCACCCGCACGTTCGTTTCGTGGCT
1 CGATCCCCGGCTTGCGCATTCTGCCTTTCTGGCCGGCTGAGCACCCGCACGCTCATTTCATGGGT
32877266 T-AGCTTAGGCATACGGAGTTCATTCC
66 TGA-CTTAGGCATACGGAGTTCATTCC
32877292 ATGTTTAAGC
Statistics
Matches: 317, Mismatches: 83, Indels: 16
0.76 0.20 0.04
Matches are distributed among these distances:
157 4 0.01
158 195 0.62
159 115 0.36
160 3 0.01
ACGTcount: A:0.20, C:0.28, G:0.28, T:0.24
Consensus pattern (158 bp):
CGATCCCCGGCTTGCGCATTCTGCCTTTCTGGCCGGCTGAGCACCCGCACGCTCATTTCATGGGT
TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTATAGTAGCAG
GATCGACAGCATGCAGGGGGGACCGAGC
Found at i:32877326 original size:26 final size:26
Alignment explanation
Indices: 32877274--32877326 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
32877264 CTTAGCTTAG
* *
32877274 GCATACGGAGTTCATTCCATGTTTAA
1 GCATACGAAGTTCATTCCATGTCTAA
32877300 GCATACGAAGTTCATTCCCA-GTCTAA
1 GCATACGAAGTTCATT-CCATGTCTAA
32877326 G
1 G
32877327 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATGTCTAA
Found at i:32878033 original size:26 final size:26
Alignment explanation
Indices: 32877997--32878049 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32877987 GTTGACTTAG
32877997 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
*
32878023 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
32878049 G
1 G
32878050 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:32878483 original size:157 final size:157
Alignment explanation
Indices: 32878023--32878523 Score: 528
Period size: 159 Copynumber: 3.2 Consensus size: 157
32878013 CCTAGTCTAA
* *
32878023 GCATATGGAGTTCATTCC-CAGTCTAAGATCGAACCGGACCAAGGGTTACGACAGCAGGATCGGC
1 GCATACGGAGTTCATTCCAC-GTCTAAGATCGAACCGGACCAAGGGTTGCGACAGCAGGATCGGC
* * *
32878087 TGCATGCAGTGGGGATCGAGCCGATCCCTGGCTTGCGCATTCTGCCT-TTTCGGTCGGCTAAGCG
65 AGCATGCAGGGGGGACCG-GCCGATCCCTGGCTTGCGCATTCTGCCTCTTT-GGTCGGCTAAGCG
* * * * *
32878151 CTCGCACACCCGTTTTGTGGGTTGCCTTAG
128 CCCGCACGCTCGTTTCGTGGGTTGACTTAG
* ** * * * *
32878181 GCATAGGGAGTTCATTCCACGTCTAAGCCCCAGCCGGACCAAGGGTTGTGGCCA-CAGGATCGGC
1 GCATACGGAGTTCATTCCACGTCTAAGATCGAACCGGACCAAGGGTTG-CGACAGCAGGATCGGC
*** * * * *
32878245 AGCATGCAGAGGGGGACCGGGCCGATCCCCATCTTACGCATTATGCCTCTTCGG-CTGGCTCAGC
65 AGCATGCAG-GGGGGACC-GGCCGATCCCTGGCTTGCGCATTCTGCCTCTTTGGTC-GGCTAAGC
* *
32878309 ACCCGCACGCTCGTTTCGTGGGATGACTTAG
127 GCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * * * * *
32878340 GCATACGGAGTTTATTCC-CAGTCTAAGATTGGACCAGACCGAGGGTTGCGACAGCAAGAT-GAC
1 GCATACGGAGTTCATTCCAC-GTCTAAGATCGAACCGGACCAAGGGTTGCGACAGCAGGATCGGC
* * *
32878403 AGCATGCAGGGGGGACCAGGCCGATCCCTGGCTTGTGCATTCTGCCTCTTTGGTCGGCTGAGTGC
65 AGCATGCAGGGGGGACC-GGCCGATCCCTGGCTTGCGCATTCTGCCTCTTTGGTCGGCTAAGCGC
* *
32878468 CCGTACGCTCGTTTCGTGGGTTGGCTTAG
129 CCGCACGCTCGTTTCGTGGGTTGACTTAG
*
32878497 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCACGTCTAAG
32878524 CATACGGAGT
Statistics
Matches: 278, Mismatches: 55, Indels: 21
0.79 0.16 0.06
Matches are distributed among these distances:
157 93 0.33
158 75 0.27
159 107 0.38
160 3 0.01
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCACGTCTAAGATCGAACCGGACCAAGGGTTGCGACAGCAGGATCGGCA
GCATGCAGGGGGGACCGGCCGATCCCTGGCTTGCGCATTCTGCCTCTTTGGTCGGCTAAGCGCCC
GCACGCTCGTTTCGTGGGTTGACTTAG
Found at i:32878526 original size:26 final size:26
Alignment explanation
Indices: 32878497--32878549 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
32878487 GTTGGCTTAG
32878497 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
32878523 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
32878549 G
1 G
32878550 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:32878931 original size:26 final size:27
Alignment explanation
Indices: 32878878--32878931 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 27
32878868 GTTGACTTAG
32878878 GCATACGAAGTTCATCCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCCAGTCTAA
* *
32878905 GCATACGGAGTTCAT-TCCCAGTCTAA
1 GCATACGAAGTTCATCCCCCAGTCTAA
32878931 G
1 G
32878932 ATCGGACTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 11 0.44
27 14 0.56
ACGTcount: A:0.28, C:0.30, G:0.19, T:0.24
Consensus pattern (27 bp):
GCATACGAAGTTCATCCCCCAGTCTAA
Found at i:32879727 original size:26 final size:26
Alignment explanation
Indices: 32879698--32879750 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
32879688 GTTGACTTAG
*
32879698 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
32879724 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
32879750 G
1 G
32879751 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:32880084 original size:159 final size:157
Alignment explanation
Indices: 32879724--32880086 Score: 358
Period size: 159 Copynumber: 2.3 Consensus size: 157
32879714 TCCAGTCTAA
* *
32879724 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCAGCACCGGCA
* * * * * * *
32879789 GCACGCAAGGGGGACCGGGTCGAGCCTCGGCTTACGTATTCTGCCTCTCCAGCAAGCTGAGCGCC
66 GCACACAAGAGAGACCGGGCCGAGCCTCGGCTTACGCATTATGCCTCTCCAGCAAGCTCAGCG-C
* *
32879854 TGCACACCCGTTTCATGGGTTGGCTTAG
130 TCCACACCCGTTTCATGGGTTGACTTAG
* ** * * * *
32879882 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCTG-TCGGACCGAGGGTTGTGGTAGC-GACACCG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCGGACCAGACCGAGGGTTGCGGTAGCAG-CACCG
* * * * * * *
32879944 GTAGCACACAGAGAGAGACCGGGCCGATCCTTGGCTTGCGCATTATGCCTCTTCGGTC-GGCTCA
63 GCAGCACACA-AGAGAGACCGGGCCGAGCCTCGGCTTACGCATTATGCCTCTCCAG-CAAGCTCA
*
32880008 GCG-TCCACATGCTCGTTTCATGGGTTGACTTAG
126 GCGCTCCACA--CCCGTTTCATGGGTTGACTTAG
* **
32880041 GCATACGGAGTTTATTCCCAGTCTAAGATCGGACCAGTTCGAGGGT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGT
32880087 AGCGCAGCAA
Statistics
Matches: 161, Mismatches: 35, Indels: 17
0.76 0.16 0.08
Matches are distributed among these distances:
157 9 0.06
158 54 0.34
159 94 0.58
160 4 0.02
ACGTcount: A:0.20, C:0.27, G:0.31, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCAGCACCGGCA
GCACACAAGAGAGACCGGGCCGAGCCTCGGCTTACGCATTATGCCTCTCCAGCAAGCTCAGCGCT
CCACACCCGTTTCATGGGTTGACTTAG
Found at i:32881407 original size:26 final size:26
Alignment explanation
Indices: 32881371--32881423 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
32881361 CTTGGCTTAG
32881371 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
32881397 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
32881423 G
1 G
32881424 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:32882096 original size:26 final size:26
Alignment explanation
Indices: 32882067--32882119 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32882057 GTTGACTGTG
32882067 GCATACGGAGTTCA-TCCTCAGTCTAA
1 GCATACGGAGTTCATTCCT-AGTCTAA
*
32882093 GCATACTGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
32882119 G
1 G
32882120 ATCAAACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:32883234 original size:159 final size:158
Alignment explanation
Indices: 32882870--32883397 Score: 374
Period size: 158 Copynumber: 3.3 Consensus size: 158
32882860 AACTCCATAT
* * * * *
32882870 GCTTAGACATTGAATGAACTCTGTATGCCTAAGCTAACCCACGAAACGAGCGTGCGGGCGTTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
* ** *** * *
32882935 TCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGATCCTGTCCCCCCTGCGTGCTGTTGATCC
66 TCGGCCAAAGAGGCAGAATGCGCAAGCCAAAGATCGAGCCTGTCCCCCCTGCGTGCTATTGATCC
** *
32883000 TGCTGATGCAACCCTCGGTCTGATCCGA
131 TGCTGACACAACCCTCGGTCTGATCAGA
* * * * * *
32883028 TCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAAACCATGAAACGAGCGTACGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCA
* *
32883092 G-CGGGCCAAAGAGGCATAATGCGCAAGCCAAAGATTG-GCCTGATCCCCCTCTGCGTGCTATTG
65 GTC-GGCCAAAGAGGCAGAATGCGCAAGCCAAAGATCGAGCCTG-TCCCCC-CTGCGTGCTATTG
* ** *
32883155 GTTTTGCT-ACCACAACCCTCGGTCTGA-CTAGG
127 ATCCTGCTGA-CACAACCCTCGGTCTGATC-AGA
* * * * *
32883187 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGC-AAGCGGGCACTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTA-CGGGCGCTCA
** * * * * ** *** * * * *
32883251 ACCGGTCGAAGAGGCAAAATGCACAAATCGGGGATTGA-CTCGGTCCCCCCTACGTGCTATCGAT
65 GTCGGCCAAAGAGGCAGAATGCGCAAGCCAAAGATCGAGC-CTGTCCCCCCTGCGTGCTATTGAT
** * * *
32883315 CCTGCT-AC-CGTAATGCTTGGTCCGATCTGA
129 CCTGCTGACAC--AACCCTCGGTCTGATCAGA
* * * *
32883345 TCTTAGAC-TAGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGT
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGT
32883398 GCAGACGCTC
Statistics
Matches: 285, Mismatches: 69, Indels: 31
0.74 0.18 0.08
Matches are distributed among these distances:
156 1 0.00
157 8 0.03
158 157 0.55
159 115 0.40
160 4 0.01
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.21
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
TCGGCCAAAGAGGCAGAATGCGCAAGCCAAAGATCGAGCCTGTCCCCCCTGCGTGCTATTGATCC
TGCTGACACAACCCTCGGTCTGATCAGA
Found at i:32884953 original size:26 final size:26
Alignment explanation
Indices: 32884910--32884962 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32884900 CCGGTCCGAT
32884910 CTTAGACTGGGAAGGAACTTCGTATG
1 CTTAGACTGGGAAGGAACTTCGTATG
*
32884936 CTTAGACT-GGAGATGAACTTCGTATG
1 CTTAGACTGGGA-AGGAACTTCGTATG
32884962 C
1 C
32884963 CAAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 3 0.12
26 22 0.88
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAAGGAACTTCGTATG
Found at i:32885259 original size:12 final size:12
Alignment explanation
Indices: 32885238--32885267 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
32885228 CTATCGATCT
*
32885238 TGCTGCTGGTCC
1 TGCTGTTGGTCC
32885250 TGCTGTTGGTCC
1 TGCTGTTGGTCC
32885262 TGCTGT
1 TGCTGT
32885268 CGCAACCTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.00, C:0.27, G:0.33, T:0.40
Consensus pattern (12 bp):
TGCTGTTGGTCC
Found at i:32885686 original size:26 final size:26
Alignment explanation
Indices: 32885634--32885686 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
32885624 CTGGTCTGAT
* *
32885634 CTTAGACTATGAATGAACTCTGAATG
1 CTTAGACTAGGAATGAACTCCGAATG
* *
32885660 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGAATG
32885686 C
1 C
32885687 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGAATG
Found at i:32886748 original size:26 final size:26
Alignment explanation
Indices: 32886697--32886749 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
32886687 CTGATCTGAT
*
32886697 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
32886723 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
32886749 C
1 C
32886750 CTAACCAACC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:32887225 original size:26 final size:26
Alignment explanation
Indices: 32887196--32887246 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
32887186 CCGATCCGAT
32887196 CTTAGACT-GGGAATGAACTCCGTATA
1 CTTAGACTAGGG-ATGAACTCCGTATA
*
32887222 CTTAGGCTAGGGATGAACTCCGTAT
1 CTTAGACTAGGGATGAACTCCGTAT
32887247 GCCTAAGTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATA
Found at i:32888134 original size:159 final size:156
Alignment explanation
Indices: 32887782--32888238 Score: 445
Period size: 159 Copynumber: 2.9 Consensus size: 156
32887772 GGCTTAAACT
* * * * *
32887782 TGGAATGAACTCCCTATACCTAAGCCAACCCACGAAATGGGCGTGTGGGCACTAAGCCGGCCAGA
1 TGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTAAGCCGACCGGA
* * * * ** ****
32887847 GAGGCAGAATGCGCAAGTCAGGGATCAGCCCGAT-CCCCCTGCATGCTATCGATCTTTCTGTTGC
66 GAGGCAGAATG-GCAAGCCAGGGATCGGCCCGGTCCCCCCTGCATGCTGTCGATCTCGCTACCAC
* * * *
32887911 AACCCTTGGTCCAGTCTGATCTTAGAC
130 AACCCTCGGTCCAGGCTGAGCATAGAC
* * ** * * *
32887938 TGGGAAGGAACTCCGTATGCCTAAGTAAACCCACGAAATGAGCGTGCGGGCGCTGAGCCGATCGG
1 T-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTAAGCCGACCGG
* * *
32888003 AGAGGCATAATAGGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCATGCTGTCGGTCTCGCTACC
65 AGAGGCAGAAT-GGCAAGCCAGGGATCGGCCCGGTCCCCC-CTGCATGCTGTCGATCTCGCTACC
*
32888068 ACAACCCTCGGTCC-GGCTAGGGCATAGAC
128 ACAACCCTCGGTCCAGGCT-GAGCATAGAC
* * * *
32888097 ATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGCGCTCAGTCGACCGG
1 -TGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTAAGCCGACCGG
* * * *
32888162 AGAGGCAGAAT-GCATAAGCCAAGGATCGGCCCGGTCCCCCCTACGTGCTGTCGATGCT-ACTAC
65 AGAGGCAGAATGGC--AAGCCAGGGATCGGCCCGGTCCCCCCTGCATGCTGTCGAT-CTCGCTAC
**
32888225 CGTAACCCTCGGTC
127 CACAACCCTCGGTC
32888239 TAGTTTGATC
Statistics
Matches: 243, Mismatches: 49, Indels: 16
0.79 0.16 0.05
Matches are distributed among these distances:
156 1 0.00
157 81 0.33
158 36 0.15
159 124 0.51
160 1 0.00
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.18
Consensus pattern (156 bp):
TGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTAAGCCGACCGGA
GAGGCAGAATGGCAAGCCAGGGATCGGCCCGGTCCCCCCTGCATGCTGTCGATCTCGCTACCACA
ACCCTCGGTCCAGGCTGAGCATAGAC
Found at i:32889516 original size:26 final size:26
Alignment explanation
Indices: 32889477--32889529 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32889467 GGCTCAAAAT
32889477 CTTAGACTGAGAATGAACTCCATATG
1 CTTAGACTGAGAATGAACTCCATATG
*
32889503 CTTAGACATG-GAATGAACTCCGTATG
1 CTTAGAC-TGAGAATGAACTCCATATG
32889529 C
1 C
32889530 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCATATG
Found at i:32889995 original size:26 final size:26
Alignment explanation
Indices: 32889959--32890011 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
32889949 CCAGTCCGAT
32889959 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCTATATG
* *
32889985 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTATATG
32890011 C
1 C
32890012 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTATATG
Found at i:32890868 original size:26 final size:26
Alignment explanation
Indices: 32890839--32890891 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
32890829 CTGGTTCAAT
*
32890839 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
32890865 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
32890891 C
1 C
32890892 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:32891522 original size:26 final size:26
Alignment explanation
Indices: 32891480--32891532 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32891470 GGCTCAAAAT
*
32891480 CTTAGACTGGGAGTGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
32891506 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
32891532 C
1 C
32891533 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:32892466 original size:367 final size:368
Alignment explanation
Indices: 32891774--32892571 Score: 957
Period size: 367 Copynumber: 2.2 Consensus size: 368
32891764 GGAATGAACT
* * * *
32891774 CCCTCGGTCTGACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCAATGAAACG
1 CCCTCGGTCCGACTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACA
* * * * ** *
32891839 GACGTGCGGGTGCTCAGCTGGCCTGAGAGGCAGGATGCACAAGCTGGGGATTGGCCCAATCCCCC
66 GACGTGCGGGTGATCAGCTGGCCGGAGAGGCAGAATGCAAAAGCCAGGGATCGGCCCAATCCCCC
* * * * * * * *
32891904 CTGCGTGCTACCGATCCTGCTATCGTAACCTTCAATCCGGTCTGATCTTAGAGTGGGAATGAACT
131 CTGCATGCTACCGATCCTACTACCGCAACCCTCAATCCGGTATGATCTTAAACTGGGAATGAACT
* * * * * * *
32891969 TCGTATGCTTAGACTGGGGATGAACTCTTTATGCCTAAGTCAACCCACCGAACGAGCGTGCGGGC
196 CCGTATGCTTAGACTGGCGATAAACTCTGTATGACTAAGTCAACCCACCGAACGAGCGTACGGAC
** * * * *
32892034 ACTCAGTTGGCCAGAGAGGCCGACCAGAGAGGCATAATATGCAAGTCGAGGATCAGCCCGGTCCC
261 ACTCAGCCGCCCAGAGAGGCCGACCAAAGAGGCATAATATACAAGTCGAGGATCAACCCGGTCCC
*
32892099 TCACTGCGTGCTGCCAATCCCGTTGCTGGTCCTA-CTGCCACAA
326 TCACTGCGTGCTGCCAATCCCGTTGCTGGTCC-AGCTACCACAA
* *
32892142 CCCTCGGTCCGGCTAAGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACA
1 CCCTCGGTCCGACTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACA
* *
32892207 -AGCGTGCGGG-GATC-GGTCGGCCGGAGAGGCAGAATGCAAAAGCCAGGGATCGGCCCGATCCC
66 GA-CGTGCGGGTGATCAGCT-GGCCGGAGAGGCAGAATGCAAAAGCCAGGGATCGGCCCAATCCC
* * * *
32892269 CCCTGCATGCTGCTGATCCTACTACCGCAACCCTCGATCTGGTATGATCTTAAACTGGGAATGAA
129 CCCTGCATGCTACCGATCCTACTACCGCAACCCTCAATCCGGTATGATCTTAAACTGGGAATGAA
* *
32892334 CTCCGTATGCTTAGGCTGGCGATAAACT-TCGTATGACTAAGTCAACCCA-TGAAACGAGCGTAC
194 CTCCGTATGCTTAGACTGGCGATAAACTCT-GTATGACTAAGTCAACCCACCG-AACGAGCGTAC
* * * * *
32892397 GGACGCTCAGCCGCCCGGAGAGGCC-AGTCAAAGATGCATAATGA-ACAAG-CTGGGGATCAACC
257 GGACACTCAGCCGCCCAGAGAGGCCGA-CCAAAGAGGCATAAT-ATACAAGTC-GAGGATCAACC
* ** * * *
32892459 TGGTCCCTTTCTGTGTGCTGCCATTCCCGTTGCTGGTGCAGCTACCACAA
319 CGGTCCCTCACTGCGTGCTGCCAATCCCGTTGCTGGTCCAGCTACCACAA
* *
32892509 CCCTCGGTCCGACTGGGGCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCATGAAA
1 CCCTCGGTCCGACTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAA
32892572 TGAACGTTTG
Statistics
Matches: 364, Mismatches: 58, Indels: 17
0.83 0.13 0.04
Matches are distributed among these distances:
366 7 0.02
367 289 0.79
368 68 0.19
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.20
Consensus pattern (368 bp):
CCCTCGGTCCGACTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACA
GACGTGCGGGTGATCAGCTGGCCGGAGAGGCAGAATGCAAAAGCCAGGGATCGGCCCAATCCCCC
CTGCATGCTACCGATCCTACTACCGCAACCCTCAATCCGGTATGATCTTAAACTGGGAATGAACT
CCGTATGCTTAGACTGGCGATAAACTCTGTATGACTAAGTCAACCCACCGAACGAGCGTACGGAC
ACTCAGCCGCCCAGAGAGGCCGACCAAAGAGGCATAATATACAAGTCGAGGATCAACCCGGTCCC
TCACTGCGTGCTGCCAATCCCGTTGCTGGTCCAGCTACCACAA
Found at i:32893262 original size:302 final size:302
Alignment explanation
Indices: 32892683--32893277 Score: 705
Period size: 302 Copynumber: 2.0 Consensus size: 302
32892673 GTTCGGTCCT
* * * *
32892683 ATCTTAGACTGGGAATGAACTTCGTATGCATAAGTCAACACACGAAATGAGCATGCGGGCGTTGA
1 ATCTTAGACGGGGAATGAACTCCGTATGCATAAGTCAACACACGAAACGAGCATGCGGGCGCTGA
* * * * * * *
32892748 GCTGATCGAAGAGGCATAATGCACAAGTCGGGGATCGGCTCGGTCCCCCTCTGCATGCTACCGAT
66 GCCGATCGAAGAGGCAAAATGCACAAGTCGAGGATCGACACGATCCCCCTCTGCATACTACCGAT
* ** * *
32892813 CTCGCTGCCACAACCCTCACTCCGGTTGGGGCTTAGACGTGGAATGAACTCCCTATGCCTAAGCT
131 CCCGCTGCCACAACCCTCACTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCC
* * * * * * * **
32892878 AACCCATGAAACAGGCGAACGGGTGCTCAGTCGATCGGAAAGGTAGAATGCGCAAGCGGGGATCG
196 AACCCACGAAACAGGCGAACAGGCGCTCAGCCGACCAGAAAGGTAAAATGCGCAAGCAAGGATCG
* *
32892943 ACCCGGTCCCCCCTGCGTGCTATCGATCCTGCTACCGATCTG
261 ACCCGATCCCCCCTGCGTGCTACCGATCCTGCTACCGATCTG
* *
32892985 ATCTTAGACGGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCAGGGC-CTG
1 ATCTTAGACGGGGAATGAACTCCGTATGCATAAGTCAACACACGAAACGAGCATGC-GGGCGCTG
* * * * * *
32893049 AGCCGA-CTGGAGAGGCAAAATGCACAAGTTGAGGATCGACACGATCCCCCTCTGCGTATTGCTG
65 AGCCGATC-GAAGAGGCAAAATGCACAAGTCGAGGATCGACACGATCCCCCTCTGCATACTACCG
* * **
32893113 GTCCCGCTGCCACAA-GCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAG
129 ATCCCGCTGCCACAACCCTCACTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAG
* ** * *
32893177 CCAACCCACGAAACGGGCGTGCAGGCGTTCAGCC-AGCCAGAGAGGTAAAATGCGCAAGCCAAGG
194 CCAACCCACGAAACAGGCGAACAGGCGCTCAGCCGA-CCAGAAAGGTAAAATGCGCAAG-CAAGG
*
32893241 ATC-ATCCCGATCCCTCCTGCGTGCTACCGATCCTGCT
257 ATCGA-CCCGATCCCCCCTGCGTGCTACCGATCCTGCT
32893278 GCAACCCTCT
Statistics
Matches: 243, Mismatches: 45, Indels: 10
0.82 0.15 0.03
Matches are distributed among these distances:
300 1 0.00
301 88 0.36
302 150 0.62
303 4 0.02
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.19
Consensus pattern (302 bp):
ATCTTAGACGGGGAATGAACTCCGTATGCATAAGTCAACACACGAAACGAGCATGCGGGCGCTGA
GCCGATCGAAGAGGCAAAATGCACAAGTCGAGGATCGACACGATCCCCCTCTGCATACTACCGAT
CCCGCTGCCACAACCCTCACTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCC
AACCCACGAAACAGGCGAACAGGCGCTCAGCCGACCAGAAAGGTAAAATGCGCAAGCAAGGATCG
ACCCGATCCCCCCTGCGTGCTACCGATCCTGCTACCGATCTG
Found at i:32893753 original size:159 final size:159
Alignment explanation
Indices: 32893496--32893914 Score: 427
Period size: 159 Copynumber: 2.6 Consensus size: 159
32893486 CAGGTTGGGG
* * * *
32893496 CTTAGACAT-GGAATGAACTCTGTATGCCTCAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCTGTATGCATAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * *
32893560 CCAGCCAGAGAGGCAAAATGCACAAGCTAAGGATCGGCCCGGTCCCCC-CTTGCGTGCTGTCGAT
65 CCAGCCAGAGAGGCAAAATGCACAAGCCAAGGATCGACCCGGTCCCCCTC-TACGTGCTGTCAAT
*
32893624 CCTGCTGCCGT-AACCCTCAGTCCT-ATCCAAT
129 CCTACTGCC-TCAACCCTCAGT-CTAATCCAAT
* * * *
32893655 CTTAGACTGGGAATGAACTCTGTATGCATAAGTCAACCAATAAAACGAGCGTGCAGGCGCTGAGC
1 CTTAGACTGGGAATGAACTCTGTATGCATAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * * ** ** * * *
32893720 TGATCGA-AGAGGCATAATGCGTAAGCCGGGGATCGACTCGGTCCGCCTCTACGTGTTGTCAATC
66 -CAGCCAGAGAGGCAAAATGCACAAGCCAAGGATCGACCCGGTCCCCCTCTACGTGCTGTCAATC
* * *
32893784 CTACTGTCTCAACCCTCGGTCTAATTCAAT
130 CTACTGCCTCAACCCTCAGTCTAATCCAAT
**
32893814 CTTAGACTGGGAATGAACTCCATATGCATAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCTGTATGCATAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * ** * *
32893879 C-GACTAGATAGGCAGGATGCGCAAGCCAGGGATCGA
66 CAG-CCAGAGAGGCAAAATGCACAAGCCAAGGATCGA
32893915 ACGGGTGGTA
Statistics
Matches: 212, Mismatches: 41, Indels: 14
0.79 0.15 0.05
Matches are distributed among these distances:
158 6 0.03
159 202 0.95
160 4 0.02
ACGTcount: A:0.26, C:0.28, G:0.26, T:0.20
Consensus pattern (159 bp):
CTTAGACTGGGAATGAACTCTGTATGCATAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
CAGCCAGAGAGGCAAAATGCACAAGCCAAGGATCGACCCGGTCCCCCTCTACGTGCTGTCAATCC
TACTGCCTCAACCCTCAGTCTAATCCAAT
Found at i:32894933 original size:184 final size:183
Alignment explanation
Indices: 32894624--32894992 Score: 440
Period size: 184 Copynumber: 2.0 Consensus size: 183
32894614 TCCGGCTAGG
* ** * * *
32894624 GCTTAGACTTGGAATGAATTCCATATGCCTAAGCCAACCCATGAAATGAGCATGCGGGTGCTCAG
1 GCTTAGACTTGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACAAGCATGCAGGCGCTCAA
* * * * * * **
32894689 TCTGCTGGAGAGGCAGAATGCGTAAGCTGAGGATCGGTCCGGTCCCCCTTGTGTGCTGTCGATCC
66 CCGGCTGGAGAGGCAAAATGCGCAAGCCGAGGATCGGACCGGTCCCCCTTACGTGCTGTCGATCC
* *
32894754 TGGTGCCGTAACCCTCT-GTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTAT
131 TGCTGCCGCAACCCT-TGGTCCGGTCCGATCTTAGA-TGGGAATGAACTCTGTAT
* *
32894808 GCTTAGA-TATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCAGGCGCTCA
1 GCTTAGACT-TGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACAAGCATGCAGGCGCTCA
* * **
32894872 ACCGG-TCGGAGAGGCAAAATGTGCAAGCCGGGGATC-GACCTGGTCCTTCTTACGTGCTGTCGA
65 ACCGGCT-GGAGAGGCAAAATGCGCAAGCCGAGGATCGGACC-GGTCCCCCTTACGTGCTGTCGA
* **
32894935 TCCTGCTGTCGCAACCCTTGGTCCGGTTTGATCTTAGATGGGAATGAACTCTGTAT
128 TCCTGCTGCCGCAACCCTTGGTCCGGTCCGATCTTAGATGGGAATGAACTCTGTAT
32894991 GC
1 GC
32894993 ATAAGTCCAT
Statistics
Matches: 156, Mismatches: 25, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
183 26 0.17
184 130 0.83
ACGTcount: A:0.22, C:0.25, G:0.28, T:0.25
Consensus pattern (183 bp):
GCTTAGACTTGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACAAGCATGCAGGCGCTCAA
CCGGCTGGAGAGGCAAAATGCGCAAGCCGAGGATCGGACCGGTCCCCCTTACGTGCTGTCGATCC
TGCTGCCGCAACCCTTGGTCCGGTCCGATCTTAGATGGGAATGAACTCTGTAT
Found at i:32895602 original size:497 final size:494
Alignment explanation
Indices: 32894529--32895736 Score: 1412
Period size: 497 Copynumber: 2.4 Consensus size: 494
32894519 AGTCGGAGAG
* * * * * * *
32894529 GCCGACCGGAGAGGTATAATGCGCAAGCCGGGGATCAGCCCGATCCCCTTCTATGTGCTGTCAGT
1 GCCGATCGGAGAGGCATAATGCGTAAGCCTGGGATCGGCCCGATCCCCTTCTGTGTGCTGTCGGT
* * * * *
32894594 CCTGTTGCCACAACCCTTGGTCCGGCTAGGGCTTAGACTTGGAATGAATTCCATATGCCTAAGCC
66 CC-GCTGCCACAACCCTCGGTCCGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCC
* * * * * *
32894659 AACCCATGAAATGAGCATGCGGGTGCTCAGTCTG-CTGGAGAGGCAGAATGCGTAAGCTGAGGAT
130 AACCCACGAAATGGGCGTGCGGGTGCTCAGTCGGTC-GGAGAGGCAGAATGTGTAAGCTGGGGAT
* * * * * *
32894723 CGGTCCGGTCCCCCTTGTGTGCTGTCGATCCTGGTGCCGTAACCCTCTGTCCGGTCCGATCTTAG
194 CGGCCCGGTCCCCCTTGTGTGCTGTCGATCCTGCTACCGCAACCCTCTGTCCAGTCCAATCTTAG
* *
32894788 ACTGGGAATGAACTCTGTATGCTTAGATATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAA
259 ACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA-CCATGAA
* *
32894853 ACAAGCGTGCAGGCGCTCAACCGGTCGGAGAGGCAAAATGTGCAAGCCGGGGATCGACCTGGTCC
323 ACAAGCGTGCAAGCGCTCAACCGGTCGGAGAGGCAAAATGTGCAAGCCAGGGATCGACCTGGTCC
** * * * ** * * * * * *
32894918 TTCTTACGTGCTGTCGATCCTGCTGTCGCAACCCTTGGTCCGGTTTGATCTTAGATGGGAATGAA
388 CCCCTACATGCTATCGATCCTGCTACCGCAACCATCGATCCAGTCTGACCTTAGATGGGAATGAA
* * * *
32894983 CTCTGTATGCATAAGTCCATGAAACGAGTGTGTGGGCACTGA
453 CTCTGTAAGCATAAGTCCATGAAACGAGCGTGCGGGCACTAA
* * * * * * * *
32895025 GCCGGTCGAAGAGGCATAATGCGTAA-CCTGAGGATCGACCCAATCCCCCTCTGCGTGCTTTCGA
1 GCCGATCGGAGAGGCATAATGCGTAAGCCTG-GGATCGGCCCGATCCCCTTCTGTGTGCTGTCGG
* * * *
32895089 TCCCGCTACCACAACCCTCAGTCCGACT-GGGACTTAGACATGGAATGTACTCCCTATGCCTAAG
65 T-CCGCTGCCACAACCCTCGGTCCGGCTAGGG-CTTAGACATGGAATGAACTCCCTATGCCTAAG
* * *
32895153 CCAACCCACGAAATGGGCGTGCGGGTGCTCAGTCGGTCAGAGAGGCAGAATGTGCAAGTTGGGGA
128 CCAACCCACGAAATGGGCGTGCGGGTGCTCAGTCGGTCGGAGAGGCAGAATGTGTAAGCTGGGGA
*
32895218 TCGGCCCGGTCCCCTCTTGTGTGCTGTCGATCCTGCTACCGCAACCCTC-GATCCAGTTCAATCT
193 TCGGCCCGGTCCCC-CTTGTGTGCTGTCGATCCTGCTACCGCAACCCTCTG-TCCAGTCCAATCT
* *
32895282 TAGATTGGGAATGAACTCCGTATGCTTAAGACATGG-ATGAA-TCCGTATGCCTCAGCCAA-CAT
256 TAGACTGGGAATGAACTCCGTATGCTT-AGACATGGAATGAACTCCGTATGCCTAAGCCAACCAT
** *
32895344 GAAATGAGCGTGCAAGCG-TC-ACCGGTCGGAGAGGCAGAATGTGCAAGCCAGGGATCGACCTGG
320 GAAACAAGCGTGCAAGCGCTCAACCGGTCGGAGAGGCAAAATGTGCAAGCCAGGGATCGACCTGG
* * *
32895407 TCCCCCCTGCATGCTATCGATCCTGCTACCGTAACCATCGATCTAGTCTGACCTTAGACTGGGAA
385 TCCCCCCTACATGCTATCGATCCTGCTACCGCAACCATCGATCCAGTCTGACCTTAGA-TGGGAA
* *
32895472 TGAACT-TCGTAAGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCACTAA
449 TGAACTCT-GTAAGCATAAGT----CCATGAAACGAGCGTGCGGGCACTAA
* *
32895522 GCCGATCGGAGAGGCATAATGCGTAAGCCTGGGATCGGCCTGGTCCCCTTCTGTGTGCTG-CTGG
1 GCCGATCGGAGAGGCATAATGCGTAAGCCTGGGATCGGCCCGATCCCCTTCTGTGTGCTGTC-GG
*
32895586 TCTCGCTGCCACAACCCTCGGTCCGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCCAAGC
65 TC-CGCTGCCACAACCCTCGGTCCGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGC
* * *
32895651 CAACCCACGAAACGGGCTGAGGGTGTGCGGGCGCTCAGTCGATCGGAGAGGCAGAATGTGTAAGC
129 CAACCCACGAAA-----T--GGGCGTGCGGGTGCTCAGTCGGTCGGAGAGGCAGAATGTGTAAGC
* *
32895716 CGGGGATCGACCCGGTCCCCC
187 TGGGGATCGGCCCGGTCCCCC
32895737 CTGCATGCTG
Statistics
Matches: 594, Mismatches: 94, Indels: 41
0.81 0.13 0.06
Matches are distributed among these distances:
492 84 0.14
493 24 0.04
494 18 0.03
495 6 0.01
496 180 0.30
497 209 0.35
498 14 0.02
502 1 0.00
503 1 0.00
504 57 0.10
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.22
Consensus pattern (494 bp):
GCCGATCGGAGAGGCATAATGCGTAAGCCTGGGATCGGCCCGATCCCCTTCTGTGTGCTGTCGGT
CCGCTGCCACAACCCTCGGTCCGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
ACCCACGAAATGGGCGTGCGGGTGCTCAGTCGGTCGGAGAGGCAGAATGTGTAAGCTGGGGATCG
GCCCGGTCCCCCTTGTGTGCTGTCGATCCTGCTACCGCAACCCTCTGTCCAGTCCAATCTTAGAC
TGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCATGAAACA
AGCGTGCAAGCGCTCAACCGGTCGGAGAGGCAAAATGTGCAAGCCAGGGATCGACCTGGTCCCCC
CTACATGCTATCGATCCTGCTACCGCAACCATCGATCCAGTCTGACCTTAGATGGGAATGAACTC
TGTAAGCATAAGTCCATGAAACGAGCGTGCGGGCACTAA
Found at i:32896523 original size:26 final size:26
Alignment explanation
Indices: 32896487--32896539 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
32896477 CCAGTCCGAT
*
32896487 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
32896513 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
32896539 C
1 C
32896540 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:32897615 original size:26 final size:26
Alignment explanation
Indices: 32897563--32897615 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
32897553 CCGATCCGAT
**
32897563 CTTAGACTGGGAATGAACTCCGCATG
1 CTTAGACTGGGAATGAACTCCAAATG
*
32897589 CTTAGACAT-GGAATGAACTCTAAATG
1 CTTAGAC-TGGGAATGAACTCCAAATG
32897615 C
1 C
32897616 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.21, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCAAATG
Found at i:32898641 original size:25 final size:26
Alignment explanation
Indices: 32898591--32898642 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
32898581 CCGGTCCTAT
*
32898591 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
32898617 CTTAGACTGGG-ATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
32898642 C
1 C
32898643 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 13 0.54
26 11 0.46
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:32898997 original size:26 final size:26
Alignment explanation
Indices: 32898968--32899098 Score: 219
Period size: 26 Copynumber: 5.0 Consensus size: 26
32898958 CCAGTCCGAT
32898968 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
32898994 CTTAGACATGGAATGAACTCCATATG
1 CTTAGACATGGAATGAACTCCGTATG
*
32899020 CTTAGGCATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
*
32899046 CTTAGACATGGAATGAACTCCATATG
1 CTTAGACATGGAATGAACTCCGTATG
32899072 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
32899098 C
1 C
32899099 CTAAGCCAAC
Statistics
Matches: 98, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
26 97 0.99
27 1 0.01
ACGTcount: A:0.31, C:0.20, G:0.23, T:0.27
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:32899375 original size:26 final size:26
Alignment explanation
Indices: 32899337--32899389 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
32899327 GGCTCAAAAT
32899337 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
32899363 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
32899389 C
1 C
32899390 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:32899752 original size:159 final size:156
Alignment explanation
Indices: 32899362--32899807 Score: 421
Period size: 159 Copynumber: 2.8 Consensus size: 156
32899352 AACTCCATAT
* * * *
32899362 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACTAGTGTGCGGGCGCTTAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCAAGAAACGAGCGTGCGGGCGCTCAG
*** * * * * * *
32899427 CCGACCAGAGAGGTAAAATGCTCAAGCTTGGGATCGGACCGGTCCCCCCCTGTGTGGTGTCGATC
66 CCGATTGGAGAGGCAAAATGCACAAGC-CGGGATCGGCCCGGT-CCCCCCTGCGTGCTG-CGATC
* ** * *
32899492 TTACTGTCACAACCCTCGGTTCGGTTTGA
128 TCACTACCACAACCCTCGGTTCGGCTGGA
* ** * * *
32899521 TCTTAGAC-TGGGAATGAACTCTGTATGCCTAAGTCAACCCAAGAAACGAGCGTGCGGGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCAAGAAACGAGCGTGCGGGCGCTCA
* ** * *
32899585 TCCGATTGGAGAGGCATTATGCGCAAGCCAGGGATCGGCCCGGTCCCCCACTGCGTGCTGCGGGT
65 GCCGATTGGAGAGGCAAAATGCACAAGCC-GGGATCGGCCCGGTCCCCC-CTGCGTGCTGC-GAT
* *
32899650 CTCGCTACCACAACCCTCGGTTTGGCTGGA
127 CTCACTACCACAACCCTCGGTTCGGCTGGA
* * * * *
32899680 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGTGGGCGGTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCAAGAAACGAGCGTGCGGGCGCTCAG
* * * *
32899745 CTC-ATTGGAGAGGCAGAATCCACAAGCTCGGGATTGGCACGGT-CCCCCTGCGTGCTGCCGATC
66 C-CGATTGGAGAGGCAAAATGCACAAGC-CGGGATCGGCCCGGTCCCCCCTGCGTGCTG-CGATC
32899808 CTGCTATCGC
Statistics
Matches: 232, Mismatches: 47, Indels: 18
0.78 0.16 0.06
Matches are distributed among these distances:
157 13 0.06
158 12 0.05
159 204 0.88
160 3 0.01
ACGTcount: A:0.22, C:0.28, G:0.29, T:0.21
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCAAGAAACGAGCGTGCGGGCGCTCAG
CCGATTGGAGAGGCAAAATGCACAAGCCGGGATCGGCCCGGTCCCCCCTGCGTGCTGCGATCTCA
CTACCACAACCCTCGGTTCGGCTGGA
Found at i:32899869 original size:26 final size:26
Alignment explanation
Indices: 32899838--32899968 Score: 190
Period size: 26 Copynumber: 5.0 Consensus size: 26
32899828 CCAATCCGAT
*
32899838 CTTAGACTGGGAATGAAATCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
32899864 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
32899890 CTTAGACTGGGAACGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
32899916 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
32899942 CTTAGAATGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
32899968 C
1 C
32899969 CTAAGTCAAC
Statistics
Matches: 94, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 94 1.00
ACGTcount: A:0.28, C:0.18, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:32900446 original size:26 final size:26
Alignment explanation
Indices: 32900417--32900469 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
32900407 CCGATCTGAT
*
32900417 CTTACACTGGGAATGAACTCTGTATG
1 CTTACACTGGGAATGAACTCTATATG
* *
32900443 CTTAGACTGGGGATGAACTCTATATG
1 CTTACACTGGGAATGAACTCTATATG
32900469 C
1 C
32900470 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCTATATG
Found at i:32901359 original size:26 final size:26
Alignment explanation
Indices: 32901323--32901375 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
32901313 CCAGTCTGAT
32901323 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
32901349 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
32901375 C
1 C
32901376 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:32903886 original size:26 final size:26
Alignment explanation
Indices: 32903857--32903909 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
32903847 GGCTCAAAAT
*
32903857 CTTAGAC-TGTGAAAGAACTCCGTATG
1 CTTAGACATG-GAAAGAACTCCATATG
*
32903883 CTTAGACATGGAATGAACTCCATATG
1 CTTAGACATGGAAAGAACTCCATATG
32903909 C
1 C
32903910 CTAAACCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAAAGAACTCCATATG
Found at i:32904224 original size:159 final size:159
Alignment explanation
Indices: 32903885--32904354 Score: 382
Period size: 159 Copynumber: 3.0 Consensus size: 159
32903875 TCCGTATGCT
* * * * *
32903885 TAGACATGGAATGAACTCCATATGCCTAAACCAACCCACGAAACGAGCGA-ACGGGCGCTTAGCC
1 TAGACATGGAATGAACTCCATATGCATAAGCCAACCCACGAAACGAAC-ATACGGGCGCTAAACC
* * ** * * * * * *
32903949 -AGTCGGAGAGGTA-AACACGCAAGTCGAGGATCGGCCC-AGT-CCCCTTACGTGCTGTCGATCC
65 AACTC-GAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGA-TCCCCCCTGCATGCTGCCGATCC
** * * * ** *
32904010 TACTACCGCAACCCTCGGTCTGGTCT-AATCT
128 CGCTACCACAACACTCGGTCCGGTCTGAGGCC
* * ** * *
32904041 TAAAC-TAGGAATGAACTCCATATGCATAAGTCAACGTACGAAACGAACGTGCGGGCGCTAAACC
1 TAGACAT-GGAATGAACTCCATATGCATAAGCCAACCCACGAAACGAACATACGGGCGCTAAACC
* * * *
32904105 AACT-GAAGAGGCATAATGCGCAAGCCGAGGATCGACCCGGTCCCCCTCTGCGTGCTGCCGGTCC
65 AACTCG-AGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCC-CTGCATGCTGCCGATCC
* *
32904169 CGCTGCCACAACCCTCGGTCCGG-CTGAGGCC
128 CGCTACCACAACACTCGGTCCGGTCTGAGGCC
* * * ** * * * *
32904200 TAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATATGGGCGCTCAGCCG
1 TAGACATGGAATGAACTCCATATGCATAAGCCAACCCACGAAACGAACATACGGGCGCTAAACCA
* * * *
32904265 ACTCGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGATCCCCCCTGCATGCTGTCGATCCCGC
66 ACTCGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCCTGCATGCTGCCGATCCCGC
*
32904330 TATCACAACACTCGGTCCGGTCTGA
131 TACCACAACACTCGGTCCGGTCTGA
32904355 TCTTAGACTG
Statistics
Matches: 246, Mismatches: 56, Indels: 21
0.76 0.17 0.07
Matches are distributed among these distances:
155 2 0.01
156 56 0.23
157 23 0.09
158 40 0.16
159 123 0.50
160 2 0.01
ACGTcount: A:0.26, C:0.32, G:0.26, T:0.17
Consensus pattern (159 bp):
TAGACATGGAATGAACTCCATATGCATAAGCCAACCCACGAAACGAACATACGGGCGCTAAACCA
ACTCGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCCTGCATGCTGCCGATCCCGC
TACCACAACACTCGGTCCGGTCTGAGGCC
Found at i:32904385 original size:26 final size:26
Alignment explanation
Indices: 32904356--32904408 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
32904346 CCGGTCTGAT
32904356 CTTAGACT-GGGATTGAACTCCGTATG
1 CTTAGACTGGGGA-TGAACTCCGTATG
32904382 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
32904408 C
1 C
32904409 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCGTATG
Found at i:32905251 original size:26 final size:26
Alignment explanation
Indices: 32905222--32905291 Score: 131
Period size: 26 Copynumber: 2.7 Consensus size: 26
32905212 TCTTAGATTA
*
32905222 GGAATGAACTCCATATGCTTAGACAT
1 GGAATGAACTCCGTATGCTTAGACAT
32905248 GGAATGAACTCCGTATGCTTAGACAT
1 GGAATGAACTCCGTATGCTTAGACAT
32905274 GGAATGAACTCCGTATGC
1 GGAATGAACTCCGTATGC
32905292 CTAAGCCAAC
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 43 1.00
ACGTcount: A:0.31, C:0.20, G:0.23, T:0.26
Consensus pattern (26 bp):
GGAATGAACTCCGTATGCTTAGACAT
Found at i:32905722 original size:158 final size:157
Alignment explanation
Indices: 32905264--32905726 Score: 465
Period size: 158 Copynumber: 2.9 Consensus size: 157
32905254 AACTCCGTAT
*
32905264 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGATCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGC-ATCAG
* * * * *
32905329 CCGGTCGGAGAGGCAGAATGTGCAAGTCGGGGATC-AACTCGGTCCCC-CATGCGTGCTGTCGAT
65 CCGGTCGAAGAGGCAGAATGTGCAAGCCGGGGATCGACCT-GATCCCCTC-TGTGTGCTGTCGAT
* *
32905392 CCTACTACCGTAACCCTCGGTGCAGTCTGA
128 CCTACTACCGCAACCCTCGGTCCAGTCTGA
** * * * * * * * *
32905422 TTTTAGAC-TGGGAGTGAACTTCGTATGCATAAGTCAACACAC-AGAACAAGCGTG-TGGCGTCG
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGA-AACGAGCGTGCGGGCATC-
* * * * *
32905484 AGCCAGTCGAAGAGGCATAATGTGCAAGCCGGGGATCGACCCGATCCCCCTCTGTATGCTGTCGG
63 AGCCGGTCGAAGAGGCAGAATGTGCAAGCCGGGGATCGACCTGAT-CCCCTCTGTGTGCTGTCGA
* * * *
32905549 TCCCACTATCACAACCCTCGGTCCAG-CTGGG
127 TCCTACTACCGCAACCCTCGGTCCAGTCT-GA
* *
32905580 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCA-TCAG
* * *
32905645 CCGGCCGAAGAGGCAGAATGCT-CAAGCCAGGGATCGGCCTGATCCCCTCTGTGTGCTG-CTGAT
65 CCGGTCGAAGAGGCAGAATG-TGCAAGCCGGGGATCGACCTGATCCCCTCTGTGTGCTGTC-GAT
* *
32905708 CCTGCTGCCGCAACCCTCG
128 CCTACTACCGCAACCCTCG
32905727 ATTCGGTCCG
Statistics
Matches: 240, Mismatches: 52, Indels: 26
0.75 0.16 0.08
Matches are distributed among these distances:
156 2 0.01
157 42 0.17
158 150 0.62
159 43 0.18
160 3 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCATCAGC
CGGTCGAAGAGGCAGAATGTGCAAGCCGGGGATCGACCTGATCCCCTCTGTGTGCTGTCGATCCT
ACTACCGCAACCCTCGGTCCAGTCTGA
Found at i:32906490 original size:26 final size:26
Alignment explanation
Indices: 32906447--32906499 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
32906437 CCGGTTCGAT
* *
32906447 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAACGAACTCCGTATG
* *
32906473 CTTAGACTGGGGACGAACTCCGTATG
1 CTTAGACTAGGAACGAACTCCGTATG
32906499 C
1 C
32906500 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAACGAACTCCGTATG
Found at i:32906848 original size:26 final size:26
Alignment explanation
Indices: 32906810--32906862 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32906800 CCGATTCGAT
32906810 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
32906836 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
32906862 C
1 C
32906863 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Done.