Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 36 of 402
Found at i:7390474 original size:20 final size:19
Alignment explanation
Indices: 7390429--7390475 Score: 67
Period size: 19 Copynumber: 2.4 Consensus size: 19
7390419 GAGAGTTTGA
7390429 ATTTTAAATTTATTTTTAT
1 ATTTTAAATTTATTTTTAT
**
7390448 AAGTTAAATTTATTTTATAT
1 ATTTTAAATTTATTTT-TAT
7390468 ATTTTAAA
1 ATTTTAAA
7390476 AAATATATTT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
19 14 0.61
20 9 0.39
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (19 bp):
ATTTTAAATTTATTTTTAT
Found at i:7397315 original size:16 final size:16
Alignment explanation
Indices: 7397296--7397327 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
7397286 AAATCATAGC
7397296 AAATCATCATCATCAT
1 AAATCATCATCATCAT
*
7397312 AAATCATCATTATCAT
1 AAATCATCATCATCAT
7397328 TGGTTTATCG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.44, C:0.22, G:0.00, T:0.34
Consensus pattern (16 bp):
AAATCATCATCATCAT
Found at i:7408557 original size:70 final size:70
Alignment explanation
Indices: 7408431--7408594 Score: 181
Period size: 70 Copynumber: 2.3 Consensus size: 70
7408421 CTGGTCATCT
* *
7408431 TTATTTTTTAACTCATGGTTTAATATCAGTCATGTTCATTTTCTAGCTAGAGGCTTAATCTCAGT
1 TTATTCTTTAACTCATGGTTCAATATCAGTCATGTTCATTTTCTAGCTAGAGGCTTAATCTCAGT
7408496 CATAG
66 CATAG
* * ** *
7408501 TTATTCTTTGACTCATGGTTCAATCTC-GATCATGTTCATTTTCT-GACTAGTTGCTTAGTCTCA
1 TTATTCTTTAACTCATGGTTCAATATCAG-TCATGTTCATTTTCTAG-CTAGAGGCTTAATCTCA
* *
7408564 GTAATAT
64 GTCATAG
* *
7408571 TTACTT-TTCAACTCACGGTTCAAT
1 TTA-TTCTTTAACTCATGGTTCAAT
7408595 CCTGGTCATA
Statistics
Matches: 79, Mismatches: 12, Indels: 6
0.81 0.12 0.06
Matches are distributed among these distances:
69 2 0.03
70 75 0.95
71 2 0.03
ACGTcount: A:0.24, C:0.18, G:0.13, T:0.45
Consensus pattern (70 bp):
TTATTCTTTAACTCATGGTTCAATATCAGTCATGTTCATTTTCTAGCTAGAGGCTTAATCTCAGT
CATAG
Found at i:7408802 original size:35 final size:35
Alignment explanation
Indices: 7408738--7408908 Score: 91
Period size: 35 Copynumber: 4.9 Consensus size: 35
7408728 TCAGCTTCTG
* *
7408738 TCATCTTTAT-TTTCTGTCTTGTGGCTCAATCCCAA
1 TCATCTTTATCTTTC-GACTTGTGACTCAATCCCAA
* * * *
7408773 TCATCTTTATCTTTCGACTTGTGATTCAATTCTAG
1 TCATCTTTATCTTTCGACTTGTGACTCAATCCCAA
* * ** * * * *
7408808 TCATATTTAT-TCTCTGACTTACGGCTCAGTCTCAG
1 TCATCTTTATCTTTC-GACTTGTGACTCAATCCCAA
* **
7408843 TCATCTTTATCTTTTC-ACTTGCT-ATTCAATCATAA
1 TCATCTTTATC-TTTCGACTTG-TGACTCAATCCCAA
* *
7408878 TCATCTTTATTCTTT-GACTTGCGGCTCAATC
1 TCATCTTTA-TCTTTCGACTTGTGACTCAATC
7408909 GTAGTTATTT
Statistics
Matches: 99, Mismatches: 29, Indels: 16
0.69 0.20 0.11
Matches are distributed among these distances:
34 3 0.03
35 87 0.88
36 6 0.06
37 3 0.03
ACGTcount: A:0.20, C:0.24, G:0.11, T:0.46
Consensus pattern (35 bp):
TCATCTTTATCTTTCGACTTGTGACTCAATCCCAA
Found at i:7408817 original size:70 final size:70
Alignment explanation
Indices: 7408733--7409028 Score: 207
Period size: 70 Copynumber: 4.2 Consensus size: 70
7408723 GCGGCTCAGC
* *
7408733 TTCT-GTCATCTTTATTTTCTGTCTTGTGGCTCAATCCCAATCATCTTTATC-TTTCGACTTG-T
1 TTCTAGTCATCTTTATTTTCTGACTTGCGGCTCAATCCCAATCATCTTTATCTTTTC-ACTTGCT
7408795 GATTCAA
65 -ATTCAA
* * * * * *
7408802 TTCTAGTCATATTTATTCTCTGACTTACGGCTCAGTCTCAGTCATCTTTATCTTTTCACTTGCTA
1 TTCTAGTCATCTTTATTTTCTGACTTGCGGCTCAATCCCAATCATCTTTATCTTTTCACTTGCTA
7408867 TTCAA
66 TTCAA
* ** * * * *
7408872 -TCATAATCATCTTTATTCTT-TGACTTGCGGCTCAATCGTAGTTATTTTTAT-TCTTTGACTT-
1 TTC-TAGTCATCTTTATT-TTCTGACTTGCGGCTCAATCCCAATCATCTTTATCT-TTTCACTTG
*
7408933 ATAACTT-AA
63 CT-A-TTCAA
* * ** * * * *
7408942 -TCGTAGTCATCTTTATTTTCTGACTTGCAGCTCAGTTTCAGTCATCTTTATCCTTTGATTTG-T
1 TTC-TAGTCATCTTTATTTTCTGACTTGCGGCTCAATCCCAATCATCTTTATCTTTTCACTTGCT
7409005 AATTCAA
65 -ATTCAA
* *
7409012 TCCCAGTCATCTTTATT
1 TTCTAGTCATCTTTATT
7409029 CTTTGAAAAA
Statistics
Matches: 182, Mismatches: 32, Indels: 25
0.76 0.13 0.10
Matches are distributed among these distances:
69 12 0.07
70 161 0.88
71 9 0.05
ACGTcount: A:0.20, C:0.22, G:0.11, T:0.47
Consensus pattern (70 bp):
TTCTAGTCATCTTTATTTTCTGACTTGCGGCTCAATCCCAATCATCTTTATCTTTTCACTTGCTA
TTCAA
Found at i:7408872 original size:105 final size:105
Alignment explanation
Indices: 7408695--7408933 Score: 254
Period size: 105 Copynumber: 2.3 Consensus size: 105
7408685 CTCGTGGTTT
* * * * **
7408695 AATCGTAGTCACATTTATTCTCTAACTTGCGGCTCAGCTTCTGTCATCTTTATTTTCTGTCTTGT
1 AATCGTAGTCATATTTATTCTCTGACTTACGGCTCAGCTTCAGTCATCTTTATTTTCTCACTTGT
* * * *
7408760 GGCTCAATCCCAATCATCTTTA-TCTTTCGACTTGTGATTC
66 GACTCAATCACAATCATCTTTATTCTTT-GACTTGCGACTC
7408800 AATTC-TAGTCATATTTATTCTCTGACTTACGGCTCAG-TCTCAGTCATCTTTATCTTT-TCACT
1 AA-TCGTAGTCATATTTATTCTCTGACTTACGGCTCAGCT-TCAGTCATCTTTAT-TTTCTCACT
* * *
7408862 TGCT-ATTCAATCATAATCATCTTTATTCTTTGACTTGCGGCTC
63 TG-TGACTCAATCACAATCATCTTTATTCTTTGACTTGCGACTC
* * *
7408905 AATCGTAGTTATTTTTATTCTTTGACTTA
1 AATCGTAGTCATATTTATTCTCTGACTTA
7408934 TAACTTAATC
Statistics
Matches: 112, Mismatches: 16, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
104 3 0.03
105 98 0.88
106 11 0.10
ACGTcount: A:0.20, C:0.23, G:0.12, T:0.46
Consensus pattern (105 bp):
AATCGTAGTCATATTTATTCTCTGACTTACGGCTCAGCTTCAGTCATCTTTATTTTCTCACTTGT
GACTCAATCACAATCATCTTTATTCTTTGACTTGCGACTC
Found at i:7408968 original size:105 final size:106
Alignment explanation
Indices: 7408737--7408969 Score: 235
Period size: 105 Copynumber: 2.2 Consensus size: 106
7408727 CTCAGCTTCT
* * * * *
7408737 GTCATCTTTATTTTCTGTCTTG-TGGCTCAATCCCAATCATCTTTATCTTTCGACTTGTGATTCA
1 GTCATCTTTATTTTCTGACTTGCTGACTCAATCACAATCATCTTTATCTTTCGACTTGCGACTCA
** *
7408801 ATTCTAGTCATATTTATTCTCTGACTTACGGCTCAGTCTCA
66 ATTCTAGTCATATTTATTCTCTGACTTACAACTCAATCTCA
* * * *
7408842 GTCATCTTTATCTTT-TCACTTGCT-ATTCAATCATAATCATCTTTATTCTTT-GACTTGCGGCT
1 GTCATCTTTAT-TTTCTGACTTGCTGACTCAATCACAATCATCTTTA-TCTTTCGACTTGCGACT
* * * * *
7408904 CAA-TCGTAGTTATTTTTATTCTTTGACTTATAACTTAATCGT-A
64 CAATTC-TAGTCATATTTATTCTCTGACTTACAACTCAATC-TCA
7408947 GTCATCTTTATTTTCTGACTTGC
1 GTCATCTTTATTTTCTGACTTGC
7408970 AGCTCAGTTT
Statistics
Matches: 104, Mismatches: 18, Indels: 12
0.78 0.13 0.09
Matches are distributed among these distances:
104 5 0.05
105 89 0.86
106 10 0.10
ACGTcount: A:0.20, C:0.21, G:0.11, T:0.47
Consensus pattern (106 bp):
GTCATCTTTATTTTCTGACTTGCTGACTCAATCACAATCATCTTTATCTTTCGACTTGCGACTCA
ATTCTAGTCATATTTATTCTCTGACTTACAACTCAATCTCA
Found at i:7410465 original size:22 final size:22
Alignment explanation
Indices: 7410440--7410499 Score: 65
Period size: 22 Copynumber: 2.9 Consensus size: 22
7410430 AAACCTTACT
7410440 AAATAATATAAAATAAAAAATA
1 AAATAATATAAAATAAAAAATA
*
7410462 AAATAAT-T--AAT-AATAATA
1 AAATAATATAAAATAAAAAATA
*
7410480 ACAATAATAAAAAATAAAAA
1 A-AATAATATAAAATAAAAA
7410500 TGATTTCAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 9
0.71 0.07 0.21
Matches are distributed among these distances:
18 7 0.23
19 9 0.30
21 1 0.03
22 10 0.33
23 3 0.10
ACGTcount: A:0.75, C:0.02, G:0.00, T:0.23
Consensus pattern (22 bp):
AAATAATATAAAATAAAAAATA
Found at i:7410487 original size:9 final size:8
Alignment explanation
Indices: 7410440--7410498 Score: 61
Period size: 7 Copynumber: 7.4 Consensus size: 8
7410430 AAACCTTACT
7410440 AAATAATA
1 AAATAATA
*
7410448 TAA-AATA
1 AAATAATA
7410455 AAA-AATA
1 AAATAATA
7410462 AAATAATTA
1 AAATAA-TA
7410471 ATAATAATA
1 A-AATAATA
7410480 ACAATAATA
1 A-AATAATA
7410489 AAA-AATA
1 AAATAATA
7410496 AAA
1 AAA
7410499 ATGATTTCAA
Statistics
Matches: 45, Mismatches: 3, Indels: 7
0.82 0.05 0.13
Matches are distributed among these distances:
7 20 0.44
8 6 0.13
9 14 0.31
10 5 0.11
ACGTcount: A:0.75, C:0.02, G:0.00, T:0.24
Consensus pattern (8 bp):
AAATAATA
Found at i:7410581 original size:15 final size:15
Alignment explanation
Indices: 7410532--7410585 Score: 56
Period size: 15 Copynumber: 3.5 Consensus size: 15
7410522 TTTTAATTTG
7410532 AAAAAAT-AAAGAAT
1 AAAAAATAAAAGAAT
* **
7410546 AATAACCAAAAGAAT
1 AAAAAATAAAAGAAT
7410561 AAAAAAAATAAAAGAAT
1 --AAAAAATAAAAGAAT
7410578 AAAAAATA
1 AAAAAATA
7410586 TATAAAAAAT
Statistics
Matches: 31, Mismatches: 6, Indels: 5
0.74 0.14 0.12
Matches are distributed among these distances:
14 4 0.13
15 15 0.48
17 12 0.39
ACGTcount: A:0.78, C:0.04, G:0.06, T:0.13
Consensus pattern (15 bp):
AAAAAATAAAAGAAT
Found at i:7410719 original size:3 final size:3
Alignment explanation
Indices: 7410711--7410755 Score: 90
Period size: 3 Copynumber: 15.0 Consensus size: 3
7410701 AAAAATTATT
7410711 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
7410756 GTTTTTATTA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:7410904 original size:15 final size:15
Alignment explanation
Indices: 7410884--7410925 Score: 57
Period size: 15 Copynumber: 2.8 Consensus size: 15
7410874 TTTAAACCCT
7410884 CAAAACCCTAAAATC
1 CAAAACCCTAAAATC
*
7410899 CAAAACCATAAAATC
1 CAAAACCCTAAAATC
* *
7410914 TAAAACTCTAAA
1 CAAAACCCTAAA
7410926 CCTCAAAACA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.57, C:0.26, G:0.00, T:0.17
Consensus pattern (15 bp):
CAAAACCCTAAAATC
Found at i:7410957 original size:16 final size:14
Alignment explanation
Indices: 7410938--7410993 Score: 58
Period size: 16 Copynumber: 3.7 Consensus size: 14
7410928 TCAAAACATT
7410938 AAACCTTCAAAAGTCA
1 AAACCTT-AAAA-TCA
*
7410954 AAACCTTAAAATTTTA
1 AAACCTTAAAA--TCA
*
7410970 AAACCCTAAAATCA
1 AAACCTTAAAATCA
7410984 AAACCTTAAA
1 AAACCTTAAA
7410994 CCTTAAAACT
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
14 11 0.32
15 4 0.12
16 19 0.56
ACGTcount: A:0.54, C:0.21, G:0.02, T:0.23
Consensus pattern (14 bp):
AAACCTTAAAATCA
Found at i:7410965 original size:53 final size:52
Alignment explanation
Indices: 7410886--7411017 Score: 142
Period size: 53 Copynumber: 2.5 Consensus size: 52
7410876 TAAACCCTCA
* * * *
7410886 AAACCCTAAAA-TCCAAAACCATAAAA-TCTAAAACTCTAAACCTCAAAACATT
1 AAACCTTAAAACT-CAAAACCTTAAAATTCTAAAACCCTAAA-ATCAAAACATT
* * *
7410938 AAACCTTCAAAAGTCAAAACCTTAAAATTTTAAAACCCTAAAATCAAAACCTT
1 AAACCTT-AAAACTCAAAACCTTAAAATTCTAAAACCCTAAAATCAAAACATT
*
7410991 AAACCTTAAAACTCGAAACCCTTAAAA
1 AAACCTTAAAACTC-AAAACCTTAAAA
7411018 CCCTAAAATT
Statistics
Matches: 68, Mismatches: 8, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
52 12 0.18
53 43 0.63
54 13 0.19
ACGTcount: A:0.52, C:0.25, G:0.02, T:0.21
Consensus pattern (52 bp):
AAACCTTAAAACTCAAAACCTTAAAATTCTAAAACCCTAAAATCAAAACATT
Found at i:7411033 original size:16 final size:16
Alignment explanation
Indices: 7410951--7411070 Score: 63
Period size: 15 Copynumber: 7.8 Consensus size: 16
7410941 CCTTCAAAAG
*
7410951 TCAAAACCTTAAAATT
1 TCAAAACCCTAAAATT
*
7410967 TTAAAACCCTAAAA--
1 TCAAAACCCTAAAATT
* **
7410981 TCAAAACCTTAAACCT
1 TCAAAACCCTAAAATT
* * **
7410997 T-AAAACTCGAAACCCT
1 TCAAAACCCTAAA-ATT
7411013 T-AAAACCCTAAAATT
1 TCAAAACCCTAAAATT
*
7411028 TCAAAAACCT-AAATT
1 TCAAAACCCTAAAATT
**
7411043 TTGAAACCCT-AAATT
1 TCAAAACCCTAAAATT
* *
7411058 TTAGAACCCTAAA
1 TCAAAACCCTAAA
7411071 CCTAAAATCC
Statistics
Matches: 81, Mismatches: 18, Indels: 10
0.74 0.17 0.09
Matches are distributed among these distances:
14 11 0.14
15 35 0.43
16 35 0.43
ACGTcount: A:0.48, C:0.23, G:0.03, T:0.26
Consensus pattern (16 bp):
TCAAAACCCTAAAATT
Found at i:7414862 original size:21 final size:21
Alignment explanation
Indices: 7414815--7414873 Score: 61
Period size: 20 Copynumber: 2.9 Consensus size: 21
7414805 CAAAAACAAG
7414815 TGTAAAAAGATATTATTATAA
1 TGTAAAAAGATATTATTATAA
** *
7414836 CATAAATA-ATATTATTGATAA
1 TGTAAAAAGATATTATT-ATAA
7414857 TGT-AAAAGA-ATTATTAT
1 TGTAAAAAGATATTATTAT
7414874 TAAAAGAATT
Statistics
Matches: 30, Mismatches: 6, Indels: 6
0.71 0.14 0.14
Matches are distributed among these distances:
19 2 0.07
20 17 0.57
21 11 0.37
ACGTcount: A:0.51, C:0.02, G:0.08, T:0.39
Consensus pattern (21 bp):
TGTAAAAAGATATTATTATAA
Found at i:7415772 original size:21 final size:21
Alignment explanation
Indices: 7415748--7415815 Score: 59
Period size: 21 Copynumber: 3.2 Consensus size: 21
7415738 ATAAACAAGT
7415748 ATAAAAAAATATTATTATAAC
1 ATAAAAAAATATTATTATAAC
* * **
7415769 AT-AAATAATATTTTTGGCAAC
1 ATAAAAAAATATTATT-ATAAC
*
7415790 ATAAAAGAATTATTATTATAA-
1 ATAAAA-AAATATTATTATAAC
7415811 ATAAA
1 ATAAA
7415816 TAATAATTCT
Statistics
Matches: 35, Mismatches: 9, Indels: 6
0.70 0.18 0.12
Matches are distributed among these distances:
20 11 0.31
21 12 0.34
22 5 0.14
23 7 0.20
ACGTcount: A:0.56, C:0.04, G:0.04, T:0.35
Consensus pattern (21 bp):
ATAAAAAAATATTATTATAAC
Found at i:7415931 original size:221 final size:215
Alignment explanation
Indices: 7415630--7416314 Score: 628
Period size: 221 Copynumber: 3.2 Consensus size: 215
7415620 GTCATAATGT
* * * * * *
7415630 AAAAGGATAAGAATAGTTGTAAAATTGATGTCATTTAGCATAAATTGGATTAGAAGTGTCGTAAC
1 AAAAGG-TGAGAATAATTATAAAATTGATATCATTTA-CATAAATTGG-TTAAAAGTATCGTAAC
* * * *
7415695 ACCTTAACAAAAAGTTATGATAATTCTAAACGTAATAAAAAATATA-AACAAGTATAAAAAAATA
63 ACCTTAACAAAAAGTTATGATAATTCTAAACGTAATGAAAAGTA-ACAACAAGTGTAAAAAGATA
*
7415759 TTATTATAACATAAATAATATTTTTGGCAACATAAAAGAATTATTATTATAAATAAATAATAATT
127 TTATTATAACATAAATAATA-TTTT-GCAACATAAAAAAATTATTATTATAAATAAA-AATAATT
7415824 CTAAATCAAAAAATAAGTGTTAATATAA
189 CTAAATCAAAAAATAAGTGTTAA-ATAA
* *
7415852 AAAAGGTGA-AAGTAATTATAAAATTCATATCATTTGACATAAATTGGTTAAAAGTATTGTAACA
1 AAAAGGTGAGAA-TAATTATAAAATTGATATCATTT-ACATAAATTGGTTAAAAGTATCGTAACA
* * * * * *
7415916 CTTTTAAGAAAAAGTTATGAT-ACTCTAAACGTAATGAAAGGTAACAATAAGTGTAGAAAGATAT
64 C-CTTAACAAAAAGTTATGATAATTCTAAACGTAATGAAAAGTAACAACAAGTGTAAAAAGATAT
* ** * * ** * *
7415980 TAGTATAACGCAAATAATTAAGTTAGCAATGTCAAAAAAATTATTACTACAAATAAAAAATAATT
128 TATTATAACATAAATAA-T-ATTTTGCAACAT-AAAAAAATTATTATTATAAAT-AAAAATAATT
*
7416045 -TAAA-CAAAAAATAAGAGTTAACATAA
189 CTAAATCAAAAAATAAGTGTTAA-ATAA
* ** * * *** * *
7416071 AACA-GTGAGAATAATCGTAAAATT-AGTATTATTTTACGTAAAATAATTTGAAA-TATCGTTAC
1 AAAAGGTGAGAATAATTATAAAATTGA-TATCA-TTTACAT-AAATTGGTTAAAAGTATCGTAAC
* * * *
7416133 ACCTTAACAAAAAATTATAATAATTTTAAACGTAATGAAAAGTAACAACAAATGTAAAAAGATAT
63 ACCTTAACAAAAAGTTATGATAATTCTAAACGTAATGAAAAGTAACAACAAGTGTAAAAAGATAT
* * * *
7416198 TATT-GAA-ATGTAATAA-A-TTTGTAACATAAAAAAATTAGTATTATAAATAAAAATAATTCTA
128 TATTATAACAT-AAATAATATTTTGCAACATAAAAAAATTATTATTATAAATAAAAATAATTCTA
*
7416259 AAT--AAAAA-AAGTATTAAAGT-A
192 AATCAAAAAATAAGTGTTAAA-TAA
*
7416280 AAAAGGTGAGAATAATTATAAAATTGATATAATTT
1 AAAAGGTGAGAATAATTATAAAATTGATATCATTT
7416315 TACTTATGAA
Statistics
Matches: 375, Mismatches: 69, Indels: 51
0.76 0.14 0.10
Matches are distributed among these distances:
209 8 0.02
210 30 0.08
211 16 0.04
212 22 0.06
213 6 0.02
214 1 0.00
217 23 0.06
218 71 0.19
219 38 0.10
220 73 0.19
221 76 0.20
222 11 0.03
ACGTcount: A:0.52, C:0.07, G:0.11, T:0.31
Consensus pattern (215 bp):
AAAAGGTGAGAATAATTATAAAATTGATATCATTTACATAAATTGGTTAAAAGTATCGTAACACC
TTAACAAAAAGTTATGATAATTCTAAACGTAATGAAAAGTAACAACAAGTGTAAAAAGATATTAT
TATAACATAAATAATATTTTGCAACATAAAAAAATTATTATTATAAATAAAAATAATTCTAAATC
AAAAAATAAGTGTTAAATAA
Found at i:7416912 original size:218 final size:219
Alignment explanation
Indices: 7416521--7416931 Score: 521
Period size: 218 Copynumber: 1.9 Consensus size: 219
7416511 TATAGTAATG
* * * *
7416521 TAAAAATGTGAGAATAATCGTAAAATTAGTATATTTTGATGTAAAATAGGTTAAAATTATCGTAA
1 TAAAAATGTGAGAATAATCGTAAAATTAGTATATTTTAATATAAAATAGATTAAAAGTATCGTAA
* * *
7416586 CACCTTAAAGAAAAATTATGACAATTCTAATAGTAATGAAATATAAGAACAAGCTTAAAAAATAT
66 CACCTTAAAAAAAAATTATGACAATTCTAATAGTAATAAAAAATAAGAACAAGCTTAAAAAATAT
* * * * *
7416651 TATTTTAACGTAAATAATTAAGTTGACAATATAATAGAATTATTATTATAAATAAAAA-TAATAA
131 TATTATAACATAAATAATTAAATTGACAACATAATAAAATTATTATTATAAATAAAAAGTAATAA
7416715 TTCAATAAAAAATAAGTGTTTACA
196 TTCAATAAAAAATAAGTGTTTACA
* * *
7416739 TAAAAATGTGAGAATAATCGT-AAATTTGTATCA-TTTAATATAAAAT-GTATTAGAAGTATTGT
1 TAAAAATGTGAGAATAATCGTAAAATTAGTAT-ATTTTAATATAAAATAG-ATTAAAAGTATCGT
* * * * *
7416801 AACACTTTAAGAAAAAAATTGTGATAATTTTAA-ATGTAATAAAAAATAAGGACAAG-TGTAAAA
64 AACACCTTAA-AAAAAAATTATGACAATTCTAATA-GTAATAAAAAATAAGAACAAGCT-TAAAA
* *
7416864 ACATATTATTATAACATAAATAATTAAATTGATAACGTAA-AAAATTATTATTATAAATAAAAAG
126 A-ATATTATTATAACATAAATAATTAAATTGACAACATAATAAAATTATTATTATAAATAAAAAG
7416928 TAAT
190 TAAT
7416932 TCCAAACTAA
Statistics
Matches: 164, Mismatches: 22, Indels: 13
0.82 0.11 0.07
Matches are distributed among these distances:
216 1 0.01
217 41 0.25
218 86 0.52
219 36 0.22
ACGTcount: A:0.51, C:0.05, G:0.10, T:0.33
Consensus pattern (219 bp):
TAAAAATGTGAGAATAATCGTAAAATTAGTATATTTTAATATAAAATAGATTAAAAGTATCGTAA
CACCTTAAAAAAAAATTATGACAATTCTAATAGTAATAAAAAATAAGAACAAGCTTAAAAAATAT
TATTATAACATAAATAATTAAATTGACAACATAATAAAATTATTATTATAAATAAAAAGTAATAA
TTCAATAAAAAATAAGTGTTTACA
Found at i:7416919 original size:21 final size:21
Alignment explanation
Indices: 7416858--7416919 Score: 65
Period size: 21 Copynumber: 3.0 Consensus size: 21
7416848 AAGGACAAGT
7416858 GTAAAAACA-TATTATTATAAC
1 GTAAAAA-ATTATTATTATAAC
* * *
7416879 ATAAATAATTA-AATTGATAAC
1 GTAAAAAATTATTATT-ATAAC
7416900 GTAAAAAATTATTATTATAA
1 GTAAAAAATTATTATTATAA
7416920 ATAAAAAGTA
Statistics
Matches: 32, Mismatches: 6, Indels: 6
0.73 0.14 0.14
Matches are distributed among these distances:
20 4 0.12
21 25 0.78
22 3 0.09
ACGTcount: A:0.55, C:0.05, G:0.05, T:0.35
Consensus pattern (21 bp):
GTAAAAAATTATTATTATAAC
Found at i:7419250 original size:3 final size:3
Alignment explanation
Indices: 7419242--7419282 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
7419232 TACCATTTTT
7419242 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
7419283 GAAATTGAGC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:7421357 original size:36 final size:36
Alignment explanation
Indices: 7421317--7421430 Score: 120
Period size: 36 Copynumber: 3.2 Consensus size: 36
7421307 AGTCCCCTCT
*
7421317 TCCTCCTCCTCCTAAGGAAGCTAACAAGTACAAGTC
1 TCCTCCTCCTCCTAAGGAAGCTAACAAGTGCAAGTC
* * ***** * *
7421353 TCCTCCACCACCTCCTCTAGTTCACAAGTGCAAGTC
1 TCCTCCTCCTCCTAAGGAAGCTAACAAGTGCAAGTC
* *
7421389 TCCTCCTCCTCCTAAGGAACCAAACAAGTGCAAGTC
1 TCCTCCTCCTCCTAAGGAAGCTAACAAGTGCAAGTC
7421425 TCCTCC
1 TCCTCC
7421431 ACCATCTCCT
Statistics
Matches: 57, Mismatches: 21, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
36 57 1.00
ACGTcount: A:0.26, C:0.39, G:0.12, T:0.23
Consensus pattern (36 bp):
TCCTCCTCCTCCTAAGGAAGCTAACAAGTGCAAGTC
Found at i:7421367 original size:72 final size:71
Alignment explanation
Indices: 7421273--7421470 Score: 245
Period size: 72 Copynumber: 2.7 Consensus size: 71
7421263 GGTCTATAAA
* * *
7421273 TACAAGTTTCCTCGACCACCTCCT-TAGGTTTACAAGTCCCCTCTTCCTCCTCCTCCTAAGGAAG
1 TACAAGTCTCCTCCACCACCTCCTCTA-GTTTACAAGTCCCCTC-TCCTCCTCCTCCTAAGGAAC
*
7421337 CTAACAAG
64 CAAACAAG
* ***
7421345 TACAAGTCTCCTCCACCACCTCCTCTAGTTCACAAGTGCAAGTCTCCTCCTCCTCCTAAGGAACC
1 TACAAGTCTCCTCCACCACCTCCTCTAGTTTACAAGT-CCCCTCTCCTCCTCCTCCTAAGGAACC
7421410 AAACAAG
65 AAACAAG
* * **
7421417 TGCAAGTCTCCTCCACCATCTCCTCTACCTTACAAGTCCCCTCCTCCTCCTCCT
1 TACAAGTCTCCTCCACCACCTCCTCTAGTTTACAAGTCCCCT-CTCCTCCTCCT
7421471 ATTCTTAAGG
Statistics
Matches: 107, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
71 2 0.02
72 100 0.93
73 5 0.05
ACGTcount: A:0.23, C:0.41, G:0.10, T:0.26
Consensus pattern (71 bp):
TACAAGTCTCCTCCACCACCTCCTCTAGTTTACAAGTCCCCTCTCCTCCTCCTCCTAAGGAACCA
AACAAG
Found at i:7421452 original size:36 final size:36
Alignment explanation
Indices: 7421340--7421453 Score: 97
Period size: 36 Copynumber: 3.2 Consensus size: 36
7421330 AAGGAAGCTA
* * *
7421340 ACAAGTACAAGTCTCCTCCACCACCTCCTCTA-GTT
1 ACAAGTGCAAGTCTCCTCCACCATCTCCTCTACCTT
* ***** **
7421375 CACAAGTGCAAGTCTCCTCCTCC-TCCTAAGGAACCAA
1 -ACAAGTGCAAGTCTCCTCCACCAT-CTCCTCTACCTT
7421412 ACAAGTGCAAGTCTCCTCCACCATCTCCTCTACCTT
1 ACAAGTGCAAGTCTCCTCCACCATCTCCTCTACCTT
7421448 ACAAGT
1 ACAAGT
7421454 CCCCTCCTCC
Statistics
Matches: 56, Mismatches: 19, Indels: 6
0.69 0.23 0.07
Matches are distributed among these distances:
36 55 0.98
37 1 0.02
ACGTcount: A:0.27, C:0.39, G:0.11, T:0.24
Consensus pattern (36 bp):
ACAAGTGCAAGTCTCCTCCACCATCTCCTCTACCTT
Found at i:7421763 original size:66 final size:66
Alignment explanation
Indices: 7421666--7421860 Score: 186
Period size: 66 Copynumber: 2.9 Consensus size: 66
7421656 ATTTACAAGC
* * *
7421666 ACAAGTCC-CCTCCTCCTACTCCTAACAAACCATACAAGTACAAGTCTCCTCCAACACTTCCTCC
1 ACAAGTCCGCCTCCTCTTCCTCC-AACGAACCATACAAGTACAAGTCTCCTCCAACA---CCTCC
*
7421730 AGTTT
62 AATTT
* *
7421735 ACAAGTCC-CCT-CTACTT-C-CCAAGGAACCATGCAAGT-CTAAGTCTCCTCCAACACCTCCAA
1 ACAAGTCCGCCTCCT-CTTCCTCCAACGAACCATACAAGTAC-AAGTCTCCTCCAACACCTCCAA
7421795 TTT
64 TTT
* * * *
7421798 ACAAGTCCGTCCTCCTCTTCCTCCTACGAAGCCATACAAGTACAAGTCACCCCCACCACCTCC
1 ACAAGTCCG-CCTCCTCTTCCTCCAACGAA-CCATACAAGTACAAGTCTCCTCCAACACCTCC
7421861 TCTAGCCTAT
Statistics
Matches: 106, Mismatches: 11, Indels: 19
0.78 0.08 0.14
Matches are distributed among these distances:
63 17 0.16
65 7 0.07
66 31 0.29
67 8 0.08
68 29 0.27
69 14 0.13
ACGTcount: A:0.28, C:0.42, G:0.08, T:0.23
Consensus pattern (66 bp):
ACAAGTCCGCCTCCTCTTCCTCCAACGAACCATACAAGTACAAGTCTCCTCCAACACCTCCAATT
T
Found at i:7422201 original size:78 final size:78
Alignment explanation
Indices: 7422056--7422202 Score: 179
Period size: 78 Copynumber: 1.9 Consensus size: 78
7422046 ACAAGTCCCC
* * * * *
7422056 CCTCATCCTCCTAAGGAAACATACAAGTAGAAGTCTCATCCACCACCTCCTTTAGTTTACAAGTA
1 CCTCATCCTCCTAAGGAAACATACAAGTACAAGTCTCACCCACCACCTCCTTCAGTCTACAAATA
7422121 CAAGACCTTTCCT
66 CAAGACCTTTCCT
* ** * * *
7422134 CCTCCTCCTCCTAAGGAGCCTTACAAGTACAAGTCTCCCCCACCACCT-CTTCCAGTCTATAAAT
1 CCTCATCCTCCTAAGGAAACATACAAGTACAAGTCTCACCCACCACCTCCTT-CAGTCTACAAAT
7422198 ACAAG
65 ACAAG
7422203 TATCCATGAC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
77 3 0.05
78 54 0.95
ACGTcount: A:0.29, C:0.35, G:0.10, T:0.25
Consensus pattern (78 bp):
CCTCATCCTCCTAAGGAAACATACAAGTACAAGTCTCACCCACCACCTCCTTCAGTCTACAAATA
CAAGACCTTTCCT
Found at i:7422399 original size:69 final size:73
Alignment explanation
Indices: 7422252--7422492 Score: 180
Period size: 75 Copynumber: 3.3 Consensus size: 73
7422242 AAGAAGCCTA
* * * ** * * *
7422252 ACAAGTACAAGTCTCCACTACCACCTCCTCCAATTTACAAGTAC-AAATCCTTTCATTCTCCTTC
1 ACAAGTACAAGTCT-C-C-ACCACCTCCCCCACTTTAAAAGTACTAGTTCCCTTC-TCCTCCTAC
7422316 TCATAAGGAACCAT
62 -C-TAAGGAACCAT
** * *
7422330 ACAAGTACAAGTCTCCA-CAGCCTCCTTCAGTTTACAAGTA-TGAG-TCCC-T-TCCTCCTA-CT
1 ACAAGTACAAGTCTCCACCA-CCTCCCCCACTTTAAAAGTACT-AGTTCCCTTCTCCTCCTACCT
7422389 AAGGAACCAT
64 AAGGAACCAT
*
7422399 AAAAGT----GTTCTCCACCACCTCCCCCACTTTAAAAGTACTAGTTCCCTTCTCCTCCTACTCC
1 ACAAGTACAAG-TCTCCACCACCTCCCCCACTTTAAAAGTACTAGTTCCCTTCTCCTCCTA--CC
7422460 TAAGGAACCAT
63 TAAGGAACCAT
*
7422471 ACAAGTACAAGTCTCCTCCACC
1 ACAAGTACAAGTCTCCACCACC
7422493 ACCTCTTTCA
Statistics
Matches: 134, Mismatches: 13, Indels: 35
0.74 0.07 0.19
Matches are distributed among these distances:
65 1 0.01
66 24 0.18
67 7 0.05
68 1 0.01
69 24 0.18
70 1 0.01
72 23 0.17
74 3 0.02
75 32 0.24
76 3 0.02
77 1 0.01
78 14 0.10
ACGTcount: A:0.29, C:0.35, G:0.09, T:0.27
Consensus pattern (73 bp):
ACAAGTACAAGTCTCCACCACCTCCCCCACTTTAAAAGTACTAGTTCCCTTCTCCTCCTACCTAA
GGAACCAT
Found at i:7422853 original size:36 final size:36
Alignment explanation
Indices: 7422801--7422888 Score: 113
Period size: 36 Copynumber: 2.4 Consensus size: 36
7422791 GAACTATATG
* ** *
7422801 AGTACAAGACTCCTCCACCGCCTCCTGCAATCTACA
1 AGTACAAGTCTCCTCCACCAACTCCTCCAATCTACA
*
7422837 AGTACAAGTCTGCTCCACCAACTCCTCCAATCTACA
1 AGTACAAGTCTCCTCCACCAACTCCTCCAATCTACA
* *
7422873 AATACAGGTCTCCTCC
1 AGTACAAGTCTCCTCC
7422889 CCCTCTTCTA
Statistics
Matches: 44, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
36 44 1.00
ACGTcount: A:0.28, C:0.40, G:0.10, T:0.22
Consensus pattern (36 bp):
AGTACAAGTCTCCTCCACCAACTCCTCCAATCTACA
Found at i:7423260 original size:22 final size:22
Alignment explanation
Indices: 7423232--7423275 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
7423222 CTAAATCTTC
*
7423232 CTTAATTCTAGGGATACAAATA
1 CTTAATTCTAGAGATACAAATA
*
7423254 CTTAATTGTAGAGATACAAATA
1 CTTAATTCTAGAGATACAAATA
7423276 TAAATATACA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.43, C:0.11, G:0.14, T:0.32
Consensus pattern (22 bp):
CTTAATTCTAGAGATACAAATA
Found at i:7427158 original size:22 final size:22
Alignment explanation
Indices: 7427130--7427173 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
7427120 CTAAATCTTC
*
7427130 CTTAATTCTAGGGATACAAATA
1 CTTAATTCTAGAGATACAAATA
7427152 CTTAATTCTAGAGATACAAATA
1 CTTAATTCTAGAGATACAAATA
7427174 TAAATATACA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.43, C:0.14, G:0.11, T:0.32
Consensus pattern (22 bp):
CTTAATTCTAGAGATACAAATA
Found at i:7431736 original size:22 final size:22
Alignment explanation
Indices: 7431710--7431753 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
7431700 TGTATATTTA
*
7431710 TATTTGTATCTCTAGAATTAAG
1 TATTTGTATCCCTAGAATTAAG
7431732 TATTTGTATCCCTAGAATTAAG
1 TATTTGTATCCCTAGAATTAAG
7431754 GAAGATTTAG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.32, C:0.11, G:0.14, T:0.43
Consensus pattern (22 bp):
TATTTGTATCCCTAGAATTAAG
Found at i:7432133 original size:18 final size:18
Alignment explanation
Indices: 7432110--7432144 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
7432100 ATGTTCTTTG
*
7432110 GGTAAAGTTTCTAGTTCA
1 GGTAAAGCTTCTAGTTCA
*
7432128 GGTAAAGCTTCTGGTTC
1 GGTAAAGCTTCTAGTTC
7432145 TCATGGATTA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.23, C:0.14, G:0.26, T:0.37
Consensus pattern (18 bp):
GGTAAAGCTTCTAGTTCA
Found at i:7437793 original size:3 final size:3
Alignment explanation
Indices: 7437785--7437811 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
7437775 TTTCATGCAA
7437785 AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT
7437812 GATGATGATG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:7438174 original size:17 final size:18
Alignment explanation
Indices: 7438119--7438174 Score: 53
Period size: 19 Copynumber: 3.1 Consensus size: 18
7438109 AATATTAATT
*
7438119 AATAAAAATAATAAT-AG
1 AATAAAAATAACAATAAG
*
7438136 AAATTAAAAATAACAATTAG
1 -AA-TAAAAATAACAATAAG
*
7438156 AATAAAAATTA-AATAAG
1 AATAAAAATAACAATAAG
7438173 AA
1 AA
7438175 AGCAAAAAAT
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
17 7 0.21
18 10 0.30
19 14 0.42
20 2 0.06
ACGTcount: A:0.70, C:0.02, G:0.05, T:0.23
Consensus pattern (18 bp):
AATAAAAATAACAATAAG
Found at i:7438458 original size:5 final size:5
Alignment explanation
Indices: 7438443--7438477 Score: 52
Period size: 5 Copynumber: 6.8 Consensus size: 5
7438433 ATATGCATTA
*
7438443 AAAAT ATAAT AAAAT AAAAT ATAAAT AAAAT AAAA
1 AAAAT AAAAT AAAAT AAAAT A-AAAT AAAAT AAAA
7438478 CAATAATAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
5 22 0.81
6 5 0.19
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (5 bp):
AAAAT
Found at i:7438461 original size:15 final size:16
Alignment explanation
Indices: 7438443--7438477 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
7438433 ATATGCATTA
7438443 AAAATAT-AATAAAAT
1 AAAATATAAATAAAAT
7438458 AAAATATAAATAAAAT
1 AAAATATAAATAAAAT
7438474 AAAA
1 AAAA
7438478 CAATAATAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 7 0.37
16 12 0.63
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (16 bp):
AAAATATAAATAAAAT
Found at i:7438485 original size:16 final size:15
Alignment explanation
Indices: 7438441--7438486 Score: 56
Period size: 16 Copynumber: 2.9 Consensus size: 15
7438431 ATATATGCAT
7438441 TAAAAATATAATAAAA
1 TAAAAA-ATAATAAAA
*
7438457 TAAAATATAAATAAAA
1 TAAAAAAT-AATAAAA
7438473 TAAAACAATAATAA
1 TAAAA-AATAATAA
7438487 TATTAAGCTA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
15 2 0.08
16 22 0.85
17 2 0.08
ACGTcount: A:0.74, C:0.02, G:0.00, T:0.24
Consensus pattern (15 bp):
TAAAAAATAATAAAA
Found at i:7438929 original size:50 final size:50
Alignment explanation
Indices: 7438799--7438986 Score: 238
Period size: 50 Copynumber: 3.8 Consensus size: 50
7438789 TTGGACAATG
* * * * *
7438799 ACTCCCCCTAAACAAAGATTTTGGAACTTTAAAAATCTTGTCTAAAAATT
1 ACTCTCCCTAAACAGAGACTTTGGAACTTTAAAAATCTTGTCTGAAAATA
*
7438849 A-TCTCCCTAAACAGAGACTTTGAAACTTTAAAAATCTTGTCTGAAAATA
1 ACTCTCCCTAAACAGAGACTTTGGAACTTTAAAAATCTTGTCTGAAAATA
* * * *
7438898 ACT-TCCCCTAAACAGAGGCTTTGGAATTTTAAAAATCTTATTTGAAAATA
1 ACTCT-CCCTAAACAGAGACTTTGGAACTTTAAAAATCTTGTCTGAAAATA
*
7438948 ACTCTCCCTAAACAGA-AGCTTTAGAACTTTAAAAATCTT
1 ACTCTCCCTAAACAGAGA-CTTTGGAACTTTAAAAATCTT
7438987 ATAAAATACA
Statistics
Matches: 120, Mismatches: 14, Indels: 8
0.85 0.10 0.06
Matches are distributed among these distances:
49 44 0.37
50 75 0.62
51 1 0.01
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.32
Consensus pattern (50 bp):
ACTCTCCCTAAACAGAGACTTTGGAACTTTAAAAATCTTGTCTGAAAATA
Found at i:7438986 original size:100 final size:99
Alignment explanation
Indices: 7438803--7438986 Score: 255
Period size: 99 Copynumber: 1.8 Consensus size: 99
7438793 ACAATGACTC
* * *
7438803 CCCCTAAACAAAGATTTTGGAACTTTAAAAATCTTGTCTAAAAATTATCTCCCTAAACAGAGACT
1 CCCCTAAACAAAGACTTTGGAACTTTAAAAATCTTATCTAAAAATAATCTCCCTAAACAGAGACT
7438868 TTGAAACTTTAAAAATCTTGTCTGAAAATAACTT
66 TTGAAACTTTAAAAATCTTGTCTGAAAATAACTT
* * * * *
7438902 CCCCTAAACAGAGGCTTTGGAATTTTAAAAATCTTATTTGAAAATAACTCTCCCTAAACAGA-AG
1 CCCCTAAACAAAGACTTTGGAACTTTAAAAATCTTATCTAAAAATAA-TCTCCCTAAACAGAGA-
7438966 CTTT-AGAACTTTAAAAATCTT
64 CTTTGA-AACTTTAAAAATCTT
7438987 ATAAAATACA
Statistics
Matches: 74, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
99 41 0.55
100 33 0.45
ACGTcount: A:0.40, C:0.18, G:0.10, T:0.32
Consensus pattern (99 bp):
CCCCTAAACAAAGACTTTGGAACTTTAAAAATCTTATCTAAAAATAATCTCCCTAAACAGAGACT
TTGAAACTTTAAAAATCTTGTCTGAAAATAACTT
Found at i:7447237 original size:12 final size:12
Alignment explanation
Indices: 7447216--7447253 Score: 58
Period size: 12 Copynumber: 3.2 Consensus size: 12
7447206 ATTTCTATTA
7447216 TTATTATTGTTG
1 TTATTATTGTTG
*
7447228 TTATTGTTGTTG
1 TTATTATTGTTG
*
7447240 TTATTATTATTG
1 TTATTATTGTTG
7447252 TT
1 TT
7447254 TAAAAAAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.16, C:0.00, G:0.16, T:0.68
Consensus pattern (12 bp):
TTATTATTGTTG
Found at i:7450771 original size:25 final size:25
Alignment explanation
Indices: 7450742--7450793 Score: 95
Period size: 25 Copynumber: 2.1 Consensus size: 25
7450732 TTTTTAACCT
*
7450742 CATACCTTTTAATATTTCATTTAAA
1 CATACCTTTTAATATTCCATTTAAA
7450767 CATACCTTTTAATATTCCATTTAAA
1 CATACCTTTTAATATTCCATTTAAA
7450792 CA
1 CA
7450794 CACGATTTAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.37, C:0.19, G:0.00, T:0.44
Consensus pattern (25 bp):
CATACCTTTTAATATTCCATTTAAA
Found at i:7450802 original size:25 final size:25
Alignment explanation
Indices: 7450749--7450802 Score: 72
Period size: 25 Copynumber: 2.2 Consensus size: 25
7450739 CCTCATACCT
* * *
7450749 TTTAATATTTCATTTAAACATACCT
1 TTTAATATTCCATTTAAACACACCA
*
7450774 TTTAATATTCCATTTAAACACACGA
1 TTTAATATTCCATTTAAACACACCA
7450799 TTTA
1 TTTA
7450803 TATCCTTAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.37, C:0.17, G:0.02, T:0.44
Consensus pattern (25 bp):
TTTAATATTCCATTTAAACACACCA
Found at i:7458313 original size:2 final size:2
Alignment explanation
Indices: 7458306--7458348 Score: 68
Period size: 2 Copynumber: 21.5 Consensus size: 2
7458296 TTAATACAAT
* *
7458306 TA TA TA TA TA TA TA TA AA TA TA TA TA TA TA TA TA CA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7458348 T
1 T
7458349 TTGTTGTAAC
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (2 bp):
TA
Found at i:7459980 original size:7 final size:7
Alignment explanation
Indices: 7459954--7459994 Score: 50
Period size: 7 Copynumber: 6.0 Consensus size: 7
7459944 TAACGAGATC
7459954 TTTTAAT
1 TTTTAAT
*
7459961 TTATTTA-
1 TT-TTAAT
7459968 TTTTAAT
1 TTTTAAT
7459975 TTTTAA-
1 TTTTAAT
7459981 TTTTAAT
1 TTTTAAT
7459988 TTTTAAT
1 TTTTAAT
7459995 AAAAAATGCA
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
6 9 0.31
7 17 0.59
8 3 0.10
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (7 bp):
TTTTAAT
Found at i:7459985 original size:13 final size:13
Alignment explanation
Indices: 7459954--7459994 Score: 64
Period size: 13 Copynumber: 3.1 Consensus size: 13
7459944 TAACGAGATC
*
7459954 TTTTAATTTATTTA
1 TTTTAATTT-TTAA
7459968 TTTTAATTTTTAA
1 TTTTAATTTTTAA
7459981 TTTTAATTTTTAA
1 TTTTAATTTTTAA
7459994 T
1 T
7459995 AAAAAATGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
13 17 0.65
14 9 0.35
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (13 bp):
TTTTAATTTTTAA
Found at i:7460308 original size:10 final size:10
Alignment explanation
Indices: 7460295--7460338 Score: 56
Period size: 10 Copynumber: 4.5 Consensus size: 10
7460285 TTAAACTAAA
7460295 TTATATATTT
1 TTATATATTT
7460305 TTAT-TAGTTT
1 TTATATA-TTT
7460315 TTATATATTT
1 TTATATATTT
*
7460325 TT-TAAATTT
1 TTATATATTT
7460334 TTATA
1 TTATA
7460339 AAATAAAAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
9 10 0.33
10 18 0.60
11 2 0.07
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.68
Consensus pattern (10 bp):
TTATATATTT
Found at i:7460727 original size:3 final size:3
Alignment explanation
Indices: 7460719--7460770 Score: 104
Period size: 3 Copynumber: 17.3 Consensus size: 3
7460709 TTTATAGATA
7460719 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
7460767 TAT T
1 TAT T
7460771 CTCTTGTACT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 49 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:7460924 original size:22 final size:22
Alignment explanation
Indices: 7460898--7460941 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
7460888 TCGCACAAAA
7460898 TTTTTCTTTTATTAGTTGTGTC
1 TTTTTCTTTTATTAGTTGTGTC
7460920 TTTTTCTTTTATTAGTTGTGTC
1 TTTTTCTTTTATTAGTTGTGTC
7460942 ATAACGTATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.09, C:0.09, G:0.14, T:0.68
Consensus pattern (22 bp):
TTTTTCTTTTATTAGTTGTGTC
Found at i:7461834 original size:152 final size:152
Alignment explanation
Indices: 7461558--7462011 Score: 773
Period size: 152 Copynumber: 3.0 Consensus size: 152
7461548 TCTAATTTTT
*
7461558 ATAAAAATAATTTATTTTTAGAAATATCTTCTAATATGTTGGTAAGATTTTCCGTAAAAAATTAT
1 ATAAAAATAATTTATTTTTAGAAATATCTTCTAATATGTTGGTAAGATTTTCTGTAAAAAATTAT
7461623 CCTACAATATGTTGGTAAAATTTTATGAAAACTATTTTTTTCATAAAATATTAAGTTATGAAATT
66 CCTACAATATGTTGGTAAAATTTTATGAAAACTATTTTTTTCATAAAATATTAAGTTATGAAATT
7461688 CTCTAATAATTTGGTATTATTA
131 CTCTAATAATTTGGTATTATTA
* *
7461710 ATAAAAATAATTTATTTTTAGAAATATCTTCTGATATGTTGGTAAGATTTTCTATAAAAAATTAT
1 ATAAAAATAATTTATTTTTAGAAATATCTTCTAATATGTTGGTAAGATTTTCTGTAAAAAATTAT
*
7461775 CCTACAATATGTTGGTAAAATTCTATGAAAACTATTTTTTTCATAAAATATTAAGTTATGAAATT
66 CCTACAATATGTTGGTAAAATTTTATGAAAACTATTTTTTTCATAAAATATTAAGTTATGAAATT
*
7461840 CT-T--TAA--TAG--TT-TT-
131 CTCTAATAATTTGGTATTATTA
7461853 ATAAAAATAATTTATTTTTAGAAATATCTTCTAATATGTTGGTAAGATTTTCTGTAAAAAATTAT
1 ATAAAAATAATTTATTTTTAGAAATATCTTCTAATATGTTGGTAAGATTTTCTGTAAAAAATTAT
7461918 CCTACAATATGTTGGTAAAATTTTATGAAAACTATTTTTTTCATAAAATATTAAGTTATGAAATT
66 CCTACAATATGTTGGTAAAATTTTATGAAAACTATTTTTTTCATAAAATATTAAGTTATGAAATT
* **
7461983 CTCTAATAGTTTGGTAAAATTA
131 CTCTAATAATTTGGTATTATTA
7462005 ATAAAAA
1 ATAAAAA
7462012 ATTTAAATCT
Statistics
Matches: 281, Mismatches: 12, Indels: 18
0.90 0.04 0.06
Matches are distributed among these distances:
143 129 0.46
144 3 0.01
145 2 0.01
146 2 0.01
147 2 0.01
148 2 0.01
149 3 0.01
151 3 0.01
152 135 0.48
ACGTcount: A:0.40, C:0.07, G:0.09, T:0.44
Consensus pattern (152 bp):
ATAAAAATAATTTATTTTTAGAAATATCTTCTAATATGTTGGTAAGATTTTCTGTAAAAAATTAT
CCTACAATATGTTGGTAAAATTTTATGAAAACTATTTTTTTCATAAAATATTAAGTTATGAAATT
CTCTAATAATTTGGTATTATTA
Found at i:7461968 original size:143 final size:143
Alignment explanation
Indices: 7461554--7461994 Score: 747
Period size: 143 Copynumber: 3.0 Consensus size: 143
7461544 AAAATCTAAT
*
7461554 TTTTATAAAAATAATTTATTTTTAGAAATATCTTCTAATATGTTGGTAAGATTTTCCGTAAAAAA
1 TTTTATAAAAATAATTTATTTTTAGAAATATCTTCTAATATGTTGGTAAGATTTTCTGTAAAAAA
7461619 TTATCCTACAATATGTTGGTAAAATTTTATGAAAACTATTTTTTTCATAAAATATTAAGTTATGA
66 TTATCCTACAATATGTTGGTAAAATTTTATGAAAACTATTTTTTTCATAAAATATTAAGTTATGA
*
7461684 AATTCTCTAATAATTTGG
131 AATTCT-T--TAA--TAG
* *
7461702 TATTATTAATAAAAATAATTTATTTTTAGAAATATCTTCTGATATGTTGGTAAGATTTTCTATAA
1 --TT-TT-ATAAAAATAATTTATTTTTAGAAATATCTTCTAATATGTTGGTAAGATTTTCTGTAA
*
7461767 AAAATTATCCTACAATATGTTGGTAAAATTCTATGAAAACTATTTTTTTCATAAAATATTAAGTT
62 AAAATTATCCTACAATATGTTGGTAAAATTTTATGAAAACTATTTTTTTCATAAAATATTAAGTT
7461832 ATGAAATTCTTTAATAG
127 ATGAAATTCTTTAATAG
7461849 TTTTATAAAAATAATTTATTTTTAGAAATATCTTCTAATATGTTGGTAAGATTTTCTGTAAAAAA
1 TTTTATAAAAATAATTTATTTTTAGAAATATCTTCTAATATGTTGGTAAGATTTTCTGTAAAAAA
7461914 TTATCCTACAATATGTTGGTAAAATTTTATGAAAACTATTTTTTTCATAAAATATTAAGTTATGA
66 TTATCCTACAATATGTTGGTAAAATTTTATGAAAACTATTTTTTTCATAAAATATTAAGTTATGA
*
7461979 AATTCTCTAATAG
131 AATTCTTTAATAG
7461992 TTT
1 TTT
7461995 GGTAAAATTA
Statistics
Matches: 280, Mismatches: 9, Indels: 11
0.93 0.03 0.04
Matches are distributed among these distances:
143 138 0.49
144 2 0.01
145 2 0.01
147 2 0.01
149 3 0.01
150 2 0.01
151 3 0.01
152 128 0.46
ACGTcount: A:0.39, C:0.07, G:0.09, T:0.45
Consensus pattern (143 bp):
TTTTATAAAAATAATTTATTTTTAGAAATATCTTCTAATATGTTGGTAAGATTTTCTGTAAAAAA
TTATCCTACAATATGTTGGTAAAATTTTATGAAAACTATTTTTTTCATAAAATATTAAGTTATGA
AATTCTTTAATAG
Found at i:7462168 original size:19 final size:18
Alignment explanation
Indices: 7462144--7462201 Score: 80
Period size: 19 Copynumber: 3.1 Consensus size: 18
7462134 TCATATAATG
7462144 AAATATCATGCAAAATATA
1 AAATATCATGC-AAATATA
*
7462163 AAATATCATGCAAATATT
1 AAATATCATGCAAATATA
*
7462181 AATTAATCATGCAAATATA
1 AAAT-ATCATGCAAATATA
7462200 AA
1 AA
7462202 TCACACAAAT
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
18 9 0.26
19 26 0.74
ACGTcount: A:0.55, C:0.10, G:0.05, T:0.29
Consensus pattern (18 bp):
AAATATCATGCAAATATA
Found at i:7462261 original size:20 final size:20
Alignment explanation
Indices: 7462218--7462268 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 20
7462208 AAATAAAATG
*
7462218 ATATATAATCAT-GAAATCA
1 ATATATAATCATAGAAATAA
7462237 A-ATATAATCATACG-AATAA
1 ATATATAATCATA-GAAATAA
7462256 ATATATAATCATA
1 ATATATAATCATA
7462269 TCATGCAATT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
18 10 0.36
19 6 0.21
20 12 0.43
ACGTcount: A:0.55, C:0.10, G:0.04, T:0.31
Consensus pattern (20 bp):
ATATATAATCATAGAAATAA
Found at i:7462347 original size:50 final size:52
Alignment explanation
Indices: 7462252--7462363 Score: 133
Period size: 50 Copynumber: 2.2 Consensus size: 52
7462242 AATCATACGA
*
7462252 ATAAATATATAATCATATCATGCAATTAAATATATTAATAATCATGCAATAAA-
1 ATAAA-ATATAAT-ATATCATGCAATTAAATATATAAATAATCATGCAATAAAT
* *
7462305 ATTAAATATAAT-TATCATGCAA-TAAATATA-AAATCATGTCATGCAATAAAT
1 ATAAAATATAATATATCATGCAATTAAATATATAAAT-A-ATCATGCAATAAAT
7462356 ATAAAATA
1 ATAAAATA
7462364 AAATCTTGCA
Statistics
Matches: 52, Mismatches: 4, Indels: 8
0.81 0.06 0.12
Matches are distributed among these distances:
48 3 0.06
49 9 0.17
50 22 0.42
51 7 0.13
52 7 0.13
53 4 0.08
ACGTcount: A:0.54, C:0.09, G:0.04, T:0.33
Consensus pattern (52 bp):
ATAAAATATAATATATCATGCAATTAAATATATAAATAATCATGCAATAAAT
Found at i:7462351 original size:24 final size:24
Alignment explanation
Indices: 7462251--7462362 Score: 122
Period size: 24 Copynumber: 4.6 Consensus size: 24
7462241 TAATCATACG
*
7462251 AATAAATATATAATCATATCATGC
1 AATAAATATAAAATCATATCATGC
*
7462275 AATTAAATATATTAAT-A-ATCATGC
1 AA-TAAATATA-AAATCATATCATGC
*
7462299 AATAAA-ATTAAATATAATTATCATGC
1 AATAAATA-TAAA-ATCA-TATCATGC
*
7462325 AATAAATATAAAATCATGTCATGC
1 AATAAATATAAAATCATATCATGC
7462349 AATAAATATAAAAT
1 AATAAATATAAAAT
7462363 AAAATCTTGC
Statistics
Matches: 77, Mismatches: 3, Indels: 16
0.80 0.03 0.17
Matches are distributed among these distances:
22 2 0.03
23 8 0.10
24 33 0.43
25 12 0.16
26 21 0.27
27 1 0.01
ACGTcount: A:0.54, C:0.09, G:0.04, T:0.33
Consensus pattern (24 bp):
AATAAATATAAAATCATATCATGC
Found at i:7462373 original size:24 final size:24
Alignment explanation
Indices: 7462251--7462382 Score: 119
Period size: 24 Copynumber: 5.4 Consensus size: 24
7462241 TAATCATACG
* *
7462251 AATAAATATATAATCATATCATGC
1 AATAAATATAAAATAATATCATGC
*
7462275 AATTAAATAT--ATTAATAATCATGC
1 AA-TAAATATAAAATAAT-ATCATGC
7462299 AATAAA-ATTAAATATAATTATCATGC
1 AATAAATA-TAAA-ATAA-TATCATGC
* *
7462325 AATAAATATAAAATCATGTCATGC
1 AATAAATATAAAATAATATCATGC
* *
7462349 AATAAATATAAAATAAAATCTTGC
1 AATAAATATAAAATAATATCATGC
7462373 AA-AATATATA
1 AATAA-ATATA
7462383 TTACAGTTAA
Statistics
Matches: 90, Mismatches: 9, Indels: 18
0.77 0.08 0.15
Matches are distributed among these distances:
22 1 0.01
23 11 0.12
24 45 0.50
25 11 0.12
26 20 0.22
27 2 0.02
ACGTcount: A:0.54, C:0.09, G:0.05, T:0.33
Consensus pattern (24 bp):
AATAAATATAAAATAATATCATGC
Found at i:7462896 original size:10 final size:10
Alignment explanation
Indices: 7462881--7462913 Score: 57
Period size: 10 Copynumber: 3.3 Consensus size: 10
7462871 AAATCTCCAG
7462881 GAACCCAATA
1 GAACCCAATA
7462891 GAACCCAATA
1 GAACCCAATA
*
7462901 AAACCCAATA
1 GAACCCAATA
7462911 GAA
1 GAA
7462914 AAGTAAATCA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.55, C:0.27, G:0.09, T:0.09
Consensus pattern (10 bp):
GAACCCAATA
Found at i:7462997 original size:19 final size:18
Alignment explanation
Indices: 7462968--7463008 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 18
7462958 AAAATTGATT
7462968 AAATCAATCCCAAAACAA
1 AAATCAATCCCAAAACAA
*
7462986 AAATCTAATCCCAAAACCA
1 AAATC-AATCCCAAAACAA
7463005 AAAT
1 AAAT
7463009 AAGACCAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
18 5 0.24
19 16 0.76
ACGTcount: A:0.59, C:0.27, G:0.00, T:0.15
Consensus pattern (18 bp):
AAATCAATCCCAAAACAA
Found at i:7463757 original size:52 final size:52
Alignment explanation
Indices: 7463622--7463765 Score: 137
Period size: 52 Copynumber: 2.8 Consensus size: 52
7463612 ATGAATTAGA
* * * * * * * *
7463622 AAATGGGCTCCTCTAAACAAAGGCTCAACAATTTTAAAAACTTTAAATTAGG
1 AAATAGGCTCATCTAACCACAGGCTCGATAACTTTAAAAACTTTAAATCAGG
* * * * *
7463674 AAATCGGCTCCTTTAACTACAGGCTCTATAACTTTAAAAACTTTGAAA-CAGG
1 AAATAGGCTCATCTAACCACAGGCTCGATAACTTTAAAAACTTT-AAATCAGG
* *
7463726 AAATAGGCTCATCTAACCAGAGGTTCGATAACTTTAAAAA
1 AAATAGGCTCATCTAACCACAGGCTCGATAACTTTAAAAA
7463766 TAAGAAATGG
Statistics
Matches: 75, Mismatches: 16, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
52 72 0.96
53 3 0.04
ACGTcount: A:0.40, C:0.19, G:0.14, T:0.27
Consensus pattern (52 bp):
AAATAGGCTCATCTAACCACAGGCTCGATAACTTTAAAAACTTTAAATCAGG
Found at i:7464584 original size:7 final size:7
Alignment explanation
Indices: 7464551--7464576 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
7464541 TTCTCAAGCT
7464551 TTTTTCA
1 TTTTTCA
7464558 TTTTTCA
1 TTTTTCA
7464565 TTTTTCA
1 TTTTTCA
7464572 TTTTT
1 TTTTT
7464577 TTCCTTTTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.12, C:0.12, G:0.00, T:0.77
Consensus pattern (7 bp):
TTTTTCA
Found at i:7464598 original size:24 final size:23
Alignment explanation
Indices: 7464550--7464605 Score: 60
Period size: 23 Copynumber: 2.3 Consensus size: 23
7464540 ATTCTCAAGC
*
7464550 TTTTTTCATTTTTCATTTTTCAT
1 TTTTTTCATTTTTCATTTATCAT
*
7464573 TTTTTTCCTTTTATCAGTTTAT-AT
1 TTTTTTCATTTT-TCA-TTTATCAT
7464597 TTCTTTTCA
1 TT-TTTTCA
7464606 AAGGAATAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
23 11 0.41
24 7 0.26
25 9 0.33
ACGTcount: A:0.14, C:0.14, G:0.02, T:0.70
Consensus pattern (23 bp):
TTTTTTCATTTTTCATTTATCAT
Found at i:7465496 original size:19 final size:20
Alignment explanation
Indices: 7465474--7465526 Score: 58
Period size: 19 Copynumber: 2.7 Consensus size: 20
7465464 TTTTCATTAT
7465474 TTTTTATTATTTTATTTT-A
1 TTTTTATTATTTTATTTTAA
*
7465493 TTTTT-TTACTTTTTTTTTAA
1 TTTTTATTA-TTTTATTTTAA
7465513 TTTTGTATT-TTTTA
1 TTTT-TATTATTTTA
7465527 ATCATTTTTC
Statistics
Matches: 28, Mismatches: 2, Indels: 7
0.76 0.05 0.19
Matches are distributed among these distances:
18 3 0.11
19 13 0.46
20 9 0.32
21 1 0.04
22 2 0.07
ACGTcount: A:0.17, C:0.02, G:0.02, T:0.79
Consensus pattern (20 bp):
TTTTTATTATTTTATTTTAA
Found at i:7469314 original size:20 final size:20
Alignment explanation
Indices: 7469291--7469334 Score: 79
Period size: 20 Copynumber: 2.2 Consensus size: 20
7469281 CATTTTCAAC
7469291 TATATAAGAAGGTAAAAGCA
1 TATATAAGAAGGTAAAAGCA
*
7469311 TATATGAGAAGGTAAAAGCA
1 TATATAAGAAGGTAAAAGCA
7469331 TATA
1 TATA
7469335 ATGATGATTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.52, C:0.05, G:0.20, T:0.23
Consensus pattern (20 bp):
TATATAAGAAGGTAAAAGCA
Found at i:7474912 original size:20 final size:21
Alignment explanation
Indices: 7474889--7474933 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 21
7474879 AATTAAATTA
7474889 AATAAAAAT-TATCATGCAAT
1 AATAAAAATATATCATGCAAT
* *
7474909 AAT-ATAATATATCATGTAAT
1 AATAAAAATATATCATGCAAT
7474929 AATAA
1 AATAA
7474934 TATAATTATG
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
19 4 0.19
20 16 0.76
21 1 0.05
ACGTcount: A:0.56, C:0.07, G:0.04, T:0.33
Consensus pattern (21 bp):
AATAAAAATATATCATGCAAT
Found at i:7474946 original size:19 final size:18
Alignment explanation
Indices: 7474889--7474949 Score: 61
Period size: 19 Copynumber: 3.3 Consensus size: 18
7474879 AATTAAATTA
* *
7474889 AATAAAAAT-TATCATGC
1 AATAATAATATATCATGT
7474906 AATAATATAATATATCATGT
1 AAT-A-ATAATATATCATGT
*
7474926 AATAATAATATAATTATGT
1 AATAATAATAT-ATCATGT
7474945 AATAA
1 AATAA
7474950 ATCATGCAAT
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
17 3 0.08
18 8 0.22
19 16 0.43
20 10 0.27
ACGTcount: A:0.54, C:0.05, G:0.05, T:0.36
Consensus pattern (18 bp):
AATAATAATATATCATGT
Found at i:7475055 original size:18 final size:18
Alignment explanation
Indices: 7475018--7475058 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
7475008 ATAAAATGAT
*
7475018 ATATAATCATGCAATCAA
1 ATATAATCATACAATCAA
* *
7475036 ATATAATCATATAATTAA
1 ATATAATCATACAATCAA
7475054 ATATA
1 ATATA
7475059 TTAATAATCA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.54, C:0.10, G:0.02, T:0.34
Consensus pattern (18 bp):
ATATAATCATACAATCAA
Found at i:7475066 original size:42 final size:43
Alignment explanation
Indices: 7474990--7475074 Score: 104
Period size: 42 Copynumber: 2.0 Consensus size: 43
7474980 ATTAATCATG
*
7474990 CAAATATAAATCATACAAATAAAATGATATATAATCATGCAAT
1 CAAATATAAATCATACAAATAAAATGATATATAATCATACAAT
* *
7475033 CAAATAT-AATCATA-TAATTAAAT-ATATTAATAATCATACAAT
1 CAAATATAAATCATACAAATAAAATGATA-T-ATAATCATACAAT
7475075 TAAAAATATT
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
40 3 0.08
41 8 0.22
42 19 0.51
43 7 0.19
ACGTcount: A:0.55, C:0.11, G:0.02, T:0.32
Consensus pattern (43 bp):
CAAATATAAATCATACAAATAAAATGATATATAATCATACAAT
Found at i:7475158 original size:48 final size:48
Alignment explanation
Indices: 7475018--7475189 Score: 153
Period size: 48 Copynumber: 3.7 Consensus size: 48
7475008 ATAAAATGAT
* * * * *
7475018 ATATAATCATGC-AATCAA-ATATAATCATATAATTAAAT-ATATT--
1 ATATAATCATACAAATAAATATATAATCATATCATGAAATCAAATTAA
* * * *
7475061 A-ATAATCATACAATTAAAAATATTAAT-A-ATCATGCAATCAGATTAA
1 ATATAATCATACAAATAAATATA-TAATCATATCATGAAATCAAATTAA
** *
7475107 ATATAATTGTACAAATAAATATATAATCATATCATGAAATTAAATTAA
1 ATATAATCATACAAATAAATATATAATCATATCATGAAATCAAATTAA
* *
7475155 ATATAATCATACAAATAAATATAAAATCGTATCAT
1 ATATAATCATACAAATAAATATATAATCATATCAT
7475190 ACAATAAATA
Statistics
Matches: 102, Mismatches: 18, Indels: 13
0.77 0.14 0.10
Matches are distributed among these distances:
42 9 0.09
43 12 0.12
44 8 0.08
45 4 0.04
46 5 0.05
47 18 0.18
48 46 0.45
ACGTcount: A:0.53, C:0.09, G:0.03, T:0.34
Consensus pattern (48 bp):
ATATAATCATACAAATAAATATATAATCATATCATGAAATCAAATTAA
Found at i:7475179 original size:24 final size:24
Alignment explanation
Indices: 7475034--7475232 Score: 98
Period size: 24 Copynumber: 8.4 Consensus size: 24
7475024 TCATGCAATC
* *
7475034 AAATATAATCATATAATTAAATAT
1 AAATATAATCATACAAATAAATAT
* * *
7475058 -ATTAATAATCATACAATTAAAAAT
1 AAAT-ATAATCATACAAATAAATAT
* * *
7475082 -ATTAATAATCATGC-AATCAGAT-T
1 AAAT-ATAATCATACAAAT-AAATAT
**
7475105 AAATATAATTGTACAAATAAATAT
1 AAATATAATCATACAAATAAATAT
*
7475129 ATAATCAT-ATCATGA-AATTAAAT-T
1 A-AAT-ATAATCAT-ACAAATAAATAT
7475153 AAATATAATCATACAAATAAATAT
1 AAATATAATCATACAAATAAATAT
*
7475177 AAA-ATCGTATCATAC-AATAAATAT
1 AAATAT--AATCATACAAATAAATAT
* *
7475201 ATAAT-TATATCATGC-AACAAATAT
1 A-AATATA-ATCATACAAATAAATAT
7475225 AAA-ATAAT
1 AAATATAAT
7475233 ATCATGCAAA
Statistics
Matches: 138, Mismatches: 20, Indels: 36
0.71 0.10 0.19
Matches are distributed among these distances:
22 5 0.04
23 36 0.26
24 71 0.51
25 23 0.17
26 3 0.02
ACGTcount: A:0.55, C:0.09, G:0.03, T:0.33
Consensus pattern (24 bp):
AAATATAATCATACAAATAAATAT
Found at i:7475234 original size:24 final size:23
Alignment explanation
Indices: 7475171--7475272 Score: 87
Period size: 24 Copynumber: 4.3 Consensus size: 23
7475161 TCATACAAAT
** *
7475171 AAATATAAAATCGTATCATACAA
1 AAATATAAAATAATATCATGCAA
* *
7475194 TAAATATATAATTATATCATGCAA
1 -AAATATAAAATAATATCATGCAA
7475218 CAAATATAAAATAATATCATGCAA
1 -AAATATAAAATAATATCATGCAA
* ** * *
7475242 ATATATATTACAAAATCATGCAAA
1 AAATATAAAATAATATCATGC-AA
7475266 AAATATA
1 AAATATA
7475273 TATATATATA
Statistics
Matches: 64, Mismatches: 13, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
23 16 0.25
24 48 0.75
ACGTcount: A:0.56, C:0.11, G:0.04, T:0.29
Consensus pattern (23 bp):
AAATATAAAATAATATCATGCAA
Found at i:7475236 original size:48 final size:47
Alignment explanation
Indices: 7475159--7475272 Score: 120
Period size: 47 Copynumber: 2.4 Consensus size: 47
7475149 AATTAAATAT
* ** **
7475159 AATCATACAAATAAATATAAAATCGTATCATACAATAAATATATAATTA
1 AATCATGCAAA-AAATATAAAATAATATCATACAA-AAATATATAACAA
* * * * *
7475208 TATCATGCAACAAATATAAAATAATATCATGCAAATATATATTACAA
1 AATCATGCAAAAAATATAAAATAATATCATACAAAAATATATAACAA
7475255 AATCATGCAAAAAATATA
1 AATCATGCAAAAAATATA
7475273 TATATATATA
Statistics
Matches: 53, Mismatches: 12, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
47 25 0.47
48 20 0.38
49 8 0.15
ACGTcount: A:0.56, C:0.11, G:0.04, T:0.29
Consensus pattern (47 bp):
AATCATGCAAAAAATATAAAATAATATCATACAAAAATATATAACAA
Found at i:7475368 original size:19 final size:19
Alignment explanation
Indices: 7475344--7475427 Score: 62
Period size: 19 Copynumber: 4.4 Consensus size: 19
7475334 AATTACATTT
7475344 AAATAAAAAAATAAAAAAA
1 AAATAAAAAAATAAAAAAA
* **
7475363 AAATAAAAAGA-AAGGAAA
1 AAATAAAAAAATAAAAAAA
* **
7475381 AAATCAAAATAATAAAATCA
1 AAAT-AAAAAAATAAAAAAA
* * *
7475401 AATTCAAAAAATAAAAACA
1 AAATAAAAAAATAAAAAAA
*
7475420 AAAGAAAA
1 AAATAAAA
7475428 CTCGCGTCTA
Statistics
Matches: 47, Mismatches: 16, Indels: 4
0.70 0.24 0.06
Matches are distributed among these distances:
18 9 0.19
19 32 0.68
20 6 0.13
ACGTcount: A:0.79, C:0.05, G:0.05, T:0.12
Consensus pattern (19 bp):
AAATAAAAAAATAAAAAAA
Found at i:7478712 original size:15 final size:14
Alignment explanation
Indices: 7478692--7478721 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
7478682 TACAATATGT
7478692 TGATATGACAAAAAA
1 TGATATGA-AAAAAA
7478707 TGATATGAAAAAAA
1 TGATATGAAAAAAA
7478721 T
1 T
7478722 ATAATTTAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.47
15 8 0.53
ACGTcount: A:0.60, C:0.03, G:0.13, T:0.23
Consensus pattern (14 bp):
TGATATGAAAAAAA
Found at i:7479452 original size:34 final size:34
Alignment explanation
Indices: 7479409--7479514 Score: 119
Period size: 34 Copynumber: 3.1 Consensus size: 34
7479399 TAACATTATA
7479409 CTAGAAAAATGTTCACATGTTATTGATGATAGAT
1 CTAGAAAAATGTTCACATGTTATTGATGATAGAT
* * * * *
7479443 CTAGTAAAATATGTT-ATAAGTGATTAAT-AT-TAT
1 CTAG-AAAA-ATGTTCACATGTTATTGATGATAGAT
7479476 ACTAGAAAAATGTTCACATGTTATTGATGATAGAT
1 -CTAGAAAAATGTTCACATGTTATTGATGATAGAT
7479511 CTAG
1 CTAG
7479515 TAATTTGTGT
Statistics
Matches: 56, Mismatches: 10, Indels: 12
0.72 0.13 0.15
Matches are distributed among these distances:
32 5 0.09
33 15 0.27
34 16 0.29
35 15 0.27
36 5 0.09
ACGTcount: A:0.40, C:0.08, G:0.16, T:0.37
Consensus pattern (34 bp):
CTAGAAAAATGTTCACATGTTATTGATGATAGAT
Found at i:7479495 original size:68 final size:68
Alignment explanation
Indices: 7479381--7479517 Score: 247
Period size: 68 Copynumber: 2.0 Consensus size: 68
7479371 TTAGTTTTAT
* *
7479381 AAATGTGTTATACGTGATTAACATTATACTAGAAAAATGTTCACATGTTATTGATGATAGATCTA
1 AAATATGTTATAAGTGATTAACATTATACTAGAAAAATGTTCACATGTTATTGATGATAGATCTA
7479446 GTA
66 GTA
*
7479449 AAATATGTTATAAGTGATTAATATTATACTAGAAAAATGTTCACATGTTATTGATGATAGATCTA
1 AAATATGTTATAAGTGATTAACATTATACTAGAAAAATGTTCACATGTTATTGATGATAGATCTA
7479514 GTA
66 GTA
7479517 A
1 A
7479518 TTTGTGTATT
Statistics
Matches: 66, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
68 66 1.00
ACGTcount: A:0.40, C:0.07, G:0.15, T:0.37
Consensus pattern (68 bp):
AAATATGTTATAAGTGATTAACATTATACTAGAAAAATGTTCACATGTTATTGATGATAGATCTA
GTA
Found at i:7480364 original size:23 final size:23
Alignment explanation
Indices: 7480329--7480373 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 23
7480319 TTACTTTATT
*
7480329 AAAAAATGAGAAAGGGAAAAAATG
1 AAAAAATGAGAAA-GAAAAAAATG
*
7480353 AAAAAA-GTGAAAGAAAAAAAT
1 AAAAAATGAGAAAGAAAAAAAT
7480374 TTAAAAAGGA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 8 0.42
23 5 0.26
24 6 0.32
ACGTcount: A:0.71, C:0.00, G:0.20, T:0.09
Consensus pattern (23 bp):
AAAAAATGAGAAAGAAAAAAATG
Found at i:7480379 original size:22 final size:21
Alignment explanation
Indices: 7480345--7480385 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
7480335 TGAGAAAGGG
7480345 AAAAAATGAAAAAAGTGAAAGA
1 AAAAAATGAAAAAAG-GAAAGA
**
7480367 AAAAAATTTAAAAAGGAAA
1 AAAAAATGAAAAAAGGAAA
7480386 AAGGAAAAGA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 4 0.24
22 13 0.76
ACGTcount: A:0.73, C:0.00, G:0.15, T:0.12
Consensus pattern (21 bp):
AAAAAATGAAAAAAGGAAAGA
Found at i:7483108 original size:10 final size:10
Alignment explanation
Indices: 7483093--7483147 Score: 65
Period size: 10 Copynumber: 5.5 Consensus size: 10
7483083 ATACCCTAAG
7483093 GTCAAAATTA
1 GTCAAAATTA
7483103 GTCAAAATTA
1 GTCAAAATTA
*
7483113 GTCAAACTTA
1 GTCAAAATTA
* **
7483123 GTAAAAAAAA
1 GTCAAAATTA
*
7483133 GTCAAAATTG
1 GTCAAAATTA
7483143 GTCAA
1 GTCAA
7483148 TTCGATCAAA
Statistics
Matches: 36, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
10 36 1.00
ACGTcount: A:0.51, C:0.11, G:0.13, T:0.25
Consensus pattern (10 bp):
GTCAAAATTA
Found at i:7483428 original size:10 final size:10
Alignment explanation
Indices: 7483413--7483479 Score: 75
Period size: 10 Copynumber: 6.8 Consensus size: 10
7483403 ACCTTAGGAG
7483413 GTCAAAATTA
1 GTCAAAATTA
*
7483423 GTCAAACTTA
1 GTCAAAATTA
*
7483433 GT-AAAATAAA
1 GTCAAAAT-TA
*
7483443 GTCAAATTTA
1 GTCAAAATTA
*
7483453 GTTAAAATTA
1 GTCAAAATTA
7483463 GTC-AAATTA
1 GTCAAAATTA
7483472 GTCAAAAT
1 GTCAAAAT
7483480 AGATGAAGCA
Statistics
Matches: 46, Mismatches: 8, Indels: 6
0.77 0.13 0.10
Matches are distributed among these distances:
9 13 0.28
10 29 0.63
11 4 0.09
ACGTcount: A:0.49, C:0.09, G:0.10, T:0.31
Consensus pattern (10 bp):
GTCAAAATTA
Found at i:7483690 original size:320 final size:321
Alignment explanation
Indices: 7483091--7483725 Score: 843
Period size: 320 Copynumber: 2.0 Consensus size: 321
7483081 AAATACCCTA
* * * *
7483091 AGGTCAAAATTAGTCAAAATTAGTCAAACTTAGTAAAAAAAAGTCAAAATTGGTCAATTCGATCA
1 AGGTCAAAATTAGTCAAAATTAGTCAAAATAAGTAAAAAAAAGTCAAAATTAGTCAATTAGATCA
* *
7483156 AAACAAATGAAGCTTGGGTCAATTCTTAAAATTCATAATCAAATTGGAACCAATGTGGTTTAAGA
66 AAACAAATGAAGCATGGGTCAATTCTTAAAATTCATAATCAAATTGGAACCAATATGGTTTAAGA
* * *
7483221 TTGAAATTTGGGATTTTAAAGCACTAAAAACCTTTAATACATTCTGAAAATGATAAAATTATCAA
131 TTGAAATTTGGGATTTTAAAGCACTAAAAACCTTTAATACATTCTGAAAAGGACAAAATTACCAA
* *
7483286 AATACCCTTTGAAGGTATTTTTATGATTTGACCTTCTTGACATCAATTTTTGTAAAAATTTTCAG
196 AATACCCTTTGAAGGTATTTTTATAATTTAACCTTCTTGACATCAATTTTTGTAAAAATTTTCAG
* *
7483351 ATCATAATTGAACTTTTTTTAAGGA-TTTTGATGCATTAAAAACTCATATCACACCTTAGG
261 ATCATAATTGAACTTTTTTTAAGGATTTTTGATGCATTAAAAACCCAGATCACACCTTAGG
* * *** *
7483411 AGGTCAAAATTAGTCAAACTTAGT-AAAATAAAGTCAAATTTAGTTAAAATTAGTCAAATTAG-T
1 AGGTCAAAATTAGTCAAAATTAGTCAAAAT-AAGTAAAAAAAAGTCAAAATTAGTC-AATTAGAT
* * *
7483474 CAAAATAGATGAAGCATGGGTCAATTCTTAAAATTCATAATCAAATTGGAACTAATATGGTTTAA
64 CAAAACAAATGAAGCATGGGTCAATTCTTAAAATTCATAATCAAATTGGAACCAATATGGTTTAA
* * * *
7483539 GATTGAAATTTGTGATTTTAGAGCACTAAAAGA-TTTTAATACATT-TTAAAAGGGACAAAATTA
129 GATTGAAATTTGGGATTTTAAAGCACTAAAA-ACCTTTAATACATTCTGAAAA-GGACAAAATTA
* * * * * * *
7483602 CCAAAATACCTTTTG-GGTGTATTTTTGTAATTTAACTTTTTTGACATTAGATTTTTGTGAAAAT
192 CCAAAATACCCTTTGAAG-GTATTTTTATAATTTAACCTTCTTGACATCA-ATTTTTGTAAAAAT
* * *
7483666 TTTTAGATCATAATTGAA-TTTTTTTGAGGATTTTTTATGCATTAAAAACCCAGATCACAC
255 TTTCAGATCATAATTGAACTTTTTTTAAGGATTTTTGATGCATTAAAAACCCAGATCACAC
7483726 TTGAAAAGTG
Statistics
Matches: 272, Mismatches: 36, Indels: 13
0.85 0.11 0.04
Matches are distributed among these distances:
319 10 0.04
320 200 0.74
321 62 0.23
ACGTcount: A:0.39, C:0.11, G:0.14, T:0.36
Consensus pattern (321 bp):
AGGTCAAAATTAGTCAAAATTAGTCAAAATAAGTAAAAAAAAGTCAAAATTAGTCAATTAGATCA
AAACAAATGAAGCATGGGTCAATTCTTAAAATTCATAATCAAATTGGAACCAATATGGTTTAAGA
TTGAAATTTGGGATTTTAAAGCACTAAAAACCTTTAATACATTCTGAAAAGGACAAAATTACCAA
AATACCCTTTGAAGGTATTTTTATAATTTAACCTTCTTGACATCAATTTTTGTAAAAATTTTCAG
ATCATAATTGAACTTTTTTTAAGGATTTTTGATGCATTAAAAACCCAGATCACACCTTAGG
Found at i:7484461 original size:59 final size:58
Alignment explanation
Indices: 7484402--7484675 Score: 408
Period size: 59 Copynumber: 4.7 Consensus size: 58
7484392 TTGTGTAGGA
7484402 AAAATTGATACTTTCAACTTTTCCCCAAAAATTATTTTTTTGAAATTTATTTTTAAGG
1 AAAATTGATACTTTCAACTTTTCCCCAAAAATTATTTTTTTGAAATTTATTTTTAAGG
* ** * *
7484460 AAAATTGATACTTTCAACTTTTTCATAAAAA-TATTTTTTGGAAATTTCGATTTTCAAGG
1 AAAATTGATACTTTCAACTTTTCCCCAAAAATTATTTTTTTGAAATTT--ATTTTTAAGG
* **
7484519 AAAATTGATACTTTCAACTTTTCCTCAAAAATCCTTTTTTTGAAAATTTATTTTTAAGG
1 AAAATTGATACTTTCAACTTTTCCCCAAAAATTATTTTTTTG-AAATTTATTTTTAAGG
* *
7484578 AAAATTGATACTTTCAACTTTTTCCCAAAAATTATTTTTTTGAAATTTATTTTTAAGA
1 AAAATTGATACTTTCAACTTTTCCCCAAAAATTATTTTTTTGAAATTTATTTTTAAGG
*
7484636 AAAATTGATACTTTCAACTTTTCCCTAAAAA-TATTTTTTT
1 AAAATTGATACTTTCAACTTTTCCCCAAAAATTATTTTTTT
7484676 TGGAATTTTT
Statistics
Matches: 193, Mismatches: 19, Indels: 9
0.87 0.09 0.04
Matches are distributed among these distances:
57 24 0.12
58 72 0.37
59 84 0.44
60 7 0.04
61 6 0.03
ACGTcount: A:0.35, C:0.12, G:0.07, T:0.46
Consensus pattern (58 bp):
AAAATTGATACTTTCAACTTTTCCCCAAAAATTATTTTTTTGAAATTTATTTTTAAGG
Found at i:7484490 original size:58 final size:58
Alignment explanation
Indices: 7484402--7484675 Score: 401
Period size: 58 Copynumber: 4.7 Consensus size: 58
7484392 TTGTGTAGGA
* *
7484402 AAAATTGATACTTTCAACTTTTCCCCAAAAATTATTTTTTTGAAATTTATTTTTAAGG
1 AAAATTGATACTTTCAACTTTTTCCTAAAAATTATTTTTTTGAAATTTATTTTTAAGG
* * *
7484460 AAAATTGATACTTTCAACTTTTTCATAAAAA-TATTTTTTGGAAATTTCGATTTTCAAGG
1 AAAATTGATACTTTCAACTTTTTCCTAAAAATTATTTTTTTGAAATTT--ATTTTTAAGG
**
7484519 AAAATTGATACTTTCAAC-TTTTCCTCAAAAATCCTTTTTTTGAAAATTTATTTTTAAGG
1 AAAATTGATACTTTCAACTTTTTCCT-AAAAATTATTTTTTTG-AAATTTATTTTTAAGG
* *
7484578 AAAATTGATACTTTCAACTTTTTCCCAAAAATTATTTTTTTGAAATTTATTTTTAAGA
1 AAAATTGATACTTTCAACTTTTTCCTAAAAATTATTTTTTTGAAATTTATTTTTAAGG
*
7484636 AAAATTGATACTTTCAACTTTTCCCTAAAAA-TATTTTTTT
1 AAAATTGATACTTTCAACTTTTTCCTAAAAATTATTTTTTT
7484676 TGGAATTTTT
Statistics
Matches: 194, Mismatches: 16, Indels: 13
0.87 0.07 0.06
Matches are distributed among these distances:
57 24 0.12
58 78 0.40
59 73 0.38
60 13 0.07
61 6 0.03
ACGTcount: A:0.35, C:0.12, G:0.07, T:0.46
Consensus pattern (58 bp):
AAAATTGATACTTTCAACTTTTTCCTAAAAATTATTTTTTTGAAATTTATTTTTAAGG
Found at i:7484718 original size:12 final size:11
Alignment explanation
Indices: 7484701--7484777 Score: 50
Period size: 12 Copynumber: 6.7 Consensus size: 11
7484691 TTATTTAAAG
7484701 AAAATAGAATAA
1 AAAATA-AATAA
7484713 AAAATAAATAA
1 AAAATAAATAA
*
7484724 ATAA-AAATAAA
1 AAAATAAAT-AA
*
7484735 ATAAAAAAATAA
1 A-AAATAAATAA
* *
7484747 AGAA-AAGTAA
1 AAAATAAATAA
*
7484757 AAAGATAAAAAA
1 AAA-ATAAATAA
7484769 TAAAATAAA
1 -AAAATAAA
7484778 GATAAAAAGA
Statistics
Matches: 52, Mismatches: 7, Indels: 12
0.73 0.10 0.17
Matches are distributed among these distances:
10 11 0.21
11 14 0.27
12 20 0.38
13 7 0.13
ACGTcount: A:0.79, C:0.00, G:0.05, T:0.16
Consensus pattern (11 bp):
AAAATAAATAA
Found at i:7484728 original size:15 final size:14
Alignment explanation
Indices: 7484708--7484773 Score: 64
Period size: 14 Copynumber: 4.5 Consensus size: 14
7484698 AAGAAAATAG
7484708 AATAAAAAATAAATA
1 AATAAAAAATAAA-A
7484723 AAT-AAAAATAAAA
1 AATAAAAAATAAAA
*
7484736 TA-AAAAAATAAAGAA
1 AATAAAAAAT-AA-AA
7484751 AAGTAAAAAGATAAAA
1 AA-TAAAAA-ATAAAA
7484767 AATAAAA
1 AATAAAA
7484774 TAAAGATAAA
Statistics
Matches: 43, Mismatches: 2, Indels: 12
0.75 0.04 0.21
Matches are distributed among these distances:
13 8 0.19
14 11 0.26
15 11 0.26
16 4 0.09
17 7 0.16
18 2 0.05
ACGTcount: A:0.80, C:0.00, G:0.05, T:0.15
Consensus pattern (14 bp):
AATAAAAAATAAAA
Found at i:7484737 original size:26 final size:26
Alignment explanation
Indices: 7484697--7484777 Score: 85
Period size: 26 Copynumber: 3.1 Consensus size: 26
7484687 ATTTTTATTT
*
7484697 AAAGAAAATAGAATAAAAAATAAATA
1 AAAGAAAATAAAATAAAAAATAAATA
*
7484723 AATA-AAAATAAAATAAAAAAATAAAGA
1 AA-AGAAAATAAAAT-AAAAAATAAATA
* *
7484750 AAAGTAAA-AAGATAAAAAATAAAATA
1 AAAGAAAATAAAATAAAAAAT-AAATA
7484776 AA
1 AA
7484778 GATAAAAAGA
Statistics
Matches: 46, Mismatches: 5, Indels: 8
0.78 0.08 0.14
Matches are distributed among these distances:
25 7 0.15
26 22 0.48
27 17 0.37
ACGTcount: A:0.79, C:0.00, G:0.06, T:0.15
Consensus pattern (26 bp):
AAAGAAAATAAAATAAAAAATAAATA
Found at i:7484778 original size:18 final size:17
Alignment explanation
Indices: 7484701--7484785 Score: 70
Period size: 18 Copynumber: 4.9 Consensus size: 17
7484691 TTATTTAAAG
*
7484701 AAAATAGAATAAAAAAT
1 AAAATAAAATAAAAAAT
7484718 -AAAT-AAAT-AAAAAT
1 AAAATAAAATAAAAAAT
*
7484732 AAAATAAAA-AAATAAAG
1 AAAATAAAATAAA-AAAT
7484749 AAAAGTAAAAAGATAAAAAAT
1 AAAA-T--AAA-ATAAAAAAT
7484770 AAAATAAAGATAAAAA
1 AAAATAAA-ATAAAAA
7484786 GAATATTAAG
Statistics
Matches: 56, Mismatches: 3, Indels: 17
0.74 0.04 0.22
Matches are distributed among these distances:
14 6 0.11
15 7 0.12
16 9 0.16
17 7 0.12
18 12 0.21
20 4 0.07
21 8 0.14
22 3 0.05
ACGTcount: A:0.79, C:0.00, G:0.06, T:0.15
Consensus pattern (17 bp):
AAAATAAAATAAAAAAT
Found at i:7484783 original size:26 final size:26
Alignment explanation
Indices: 7484696--7484787 Score: 84
Period size: 25 Copynumber: 3.5 Consensus size: 26
7484686 GATTTTTATT
*
7484696 TAAAGA-AAATAGAATAAAAAAT-AAA
1 TAAAGATAAAAAG-ATAAAAAATAAAA
* * *
7484721 TAAATAAAAATAAAATAAAAAAATAAAGA
1 TAAAGATAAA-AAGAT-AAAAAATAAA-A
7484750 -AAAG-TAAAAAGATAAAAAATAAAA
1 TAAAGATAAAAAGATAAAAAATAAAA
7484774 TAAAGATAAAAAGA
1 TAAAGATAAAAAGA
7484788 ATATTAAGTA
Statistics
Matches: 54, Mismatches: 6, Indels: 13
0.74 0.08 0.18
Matches are distributed among these distances:
24 1 0.02
25 19 0.35
26 17 0.31
27 11 0.20
28 5 0.09
29 1 0.02
ACGTcount: A:0.77, C:0.00, G:0.08, T:0.15
Consensus pattern (26 bp):
TAAAGATAAAAAGATAAAAAATAAAA
Found at i:7485692 original size:3 final size:3
Alignment explanation
Indices: 7485684--7485742 Score: 100
Period size: 3 Copynumber: 19.7 Consensus size: 3
7485674 AGAAAACAAA
*
7485684 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAG
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
*
7485732 AAT GAT AAT AA
1 AAT AAT AAT AA
7485743 AAAAAATCAG
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 52 1.00
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:7485887 original size:16 final size:16
Alignment explanation
Indices: 7485858--7485904 Score: 64
Period size: 15 Copynumber: 3.1 Consensus size: 16
7485848 AATTATTATA
7485858 ATATAA-TA-ATAAAT
1 ATATAACTATATAAAT
7485872 ATATAACTATATAAAT
1 ATATAACTATATAAAT
*
7485888 ATATTAC-ATATAAAT
1 ATATAACTATATAAAT
7485903 AT
1 AT
7485905 TAATAGAGAA
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
14 6 0.20
15 12 0.40
16 12 0.40
ACGTcount: A:0.57, C:0.04, G:0.00, T:0.38
Consensus pattern (16 bp):
ATATAACTATATAAAT
Found at i:7485940 original size:56 final size:56
Alignment explanation
Indices: 7485857--7485977 Score: 142
Period size: 56 Copynumber: 2.2 Consensus size: 56
7485847 AAATTATTAT
* ** *
7485857 AATATAAT-AATAAATATATAACTATATAAATATATTACATATA-AATATTAATAGA-G
1 AATA-AATAAATAAATAAATAAAGATATAAATATATTA-ATATATAATAATAATA-ATG
*
7485913 AATAAATAAATAAATAAATAAAGATATACATATATTAATATATAATAATAATAATG
1 AATAAATAAATAAATAAATAAAGATATAAATATATTAATATATAATAATAATAATG
7485969 AAT-AATAAA
1 AATAAATAAA
7485978 ATACGTAAAA
Statistics
Matches: 57, Mismatches: 5, Indels: 7
0.83 0.07 0.10
Matches are distributed among these distances:
55 15 0.26
56 42 0.74
ACGTcount: A:0.61, C:0.02, G:0.03, T:0.33
Consensus pattern (56 bp):
AATAAATAAATAAATAAATAAAGATATAAATATATTAATATATAATAATAATAATG
Found at i:7485967 original size:16 final size:15
Alignment explanation
Indices: 7485860--7485966 Score: 60
Period size: 16 Copynumber: 6.7 Consensus size: 15
7485850 TTATTATAAT
7485860 ATAATAATAAATAT-
1 ATAATAATAAATATA
7485874 ATAACTATATAAATATA
1 ATAA-TA-ATAAATATA
*
7485891 TTACAT-ATAAATATTA
1 ATA-ATAATAAATA-TA
*
7485907 ATAGAGAATAAATA-A
1 ATA-ATAATAAATATA
7485922 ATAAATAAATAAAGATATA
1 AT-AAT-AAT-AA-ATATA
*
7485941 CAT-ATATTAATATATA
1 -ATAATAATAA-ATATA
7485957 ATAATAATAA
1 ATAATAATAA
7485967 TGAATAATAA
Statistics
Matches: 72, Mismatches: 8, Indels: 24
0.69 0.08 0.23
Matches are distributed among these distances:
14 4 0.06
15 15 0.21
16 30 0.42
17 14 0.19
18 6 0.08
19 1 0.01
20 2 0.03
ACGTcount: A:0.61, C:0.03, G:0.03, T:0.34
Consensus pattern (15 bp):
ATAATAATAAATATA
Found at i:7486210 original size:9 final size:9
Alignment explanation
Indices: 7486186--7486241 Score: 53
Period size: 9 Copynumber: 6.2 Consensus size: 9
7486176 CAACTCAACA
7486186 TTGTCATTTT
1 TTGT-ATTTT
7486196 TT-TATTTT
1 TTGTATTTT
7486204 TTGTATTTTT
1 TTGTA-TTTT
*
7486214 TTGTGTTTT
1 TTGTATTTT
* *
7486223 TTTTGTTTT
1 TTGTATTTT
7486232 TT-TATTTT
1 TTGTATTTT
7486240 TT
1 TT
7486242 TTTACCAAAG
Statistics
Matches: 41, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
8 14 0.34
9 17 0.41
10 10 0.24
ACGTcount: A:0.07, C:0.02, G:0.09, T:0.82
Consensus pattern (9 bp):
TTGTATTTT
Found at i:7486223 original size:11 final size:10
Alignment explanation
Indices: 7486200--7486244 Score: 56
Period size: 10 Copynumber: 4.4 Consensus size: 10
7486190 CATTTTTTTA
*
7486200 TTTTTTGTAT
1 TTTTTTGTTT
7486210 TTTTTTGTGTT
1 TTTTTTGT-TT
7486221 TTTTTTGTTT
1 TTTTTTGTTT
7486231 TTTTATT-TTT
1 TTTT-TTGTTT
7486241 TTTT
1 TTTT
7486245 ACCAAAGCTC
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
10 21 0.66
11 11 0.34
ACGTcount: A:0.04, C:0.00, G:0.09, T:0.87
Consensus pattern (10 bp):
TTTTTTGTTT
Found at i:7486242 original size:9 final size:9
Alignment explanation
Indices: 7486192--7486243 Score: 61
Period size: 9 Copynumber: 5.8 Consensus size: 9
7486182 AACATTGTCA
7486192 TTTTTTTAT
1 TTTTTTTAT
*
7486201 TTTTTGTAT
1 TTTTTTTAT
*
7486210 TTTTTTGTGT
1 TTTTTT-TAT
*
7486220 TTTTTTT-G
1 TTTTTTTAT
7486228 TTTTTTTAT
1 TTTTTTTAT
7486237 TTTTTTT
1 TTTTTTT
7486244 TACCAAAGCT
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
8 7 0.19
9 21 0.58
10 8 0.22
ACGTcount: A:0.06, C:0.00, G:0.08, T:0.87
Consensus pattern (9 bp):
TTTTTTTAT
Found at i:7486386 original size:42 final size:42
Alignment explanation
Indices: 7486251--7486547 Score: 420
Period size: 42 Copynumber: 7.1 Consensus size: 42
7486241 TTTTACCAAA
** * * *
7486251 GCTCCTCTAAATGGAGGCTCAATGACTTTG-AAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAAGTAAATT
**
7486292 GCTCCTCTAAACAGAGGCACCATAACTTTGAAAAA-TAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAAGTAAATT
7486333 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAAGTAAATT
*
7486375 GCTCTTCTAAACAGAGGCACCACGACTTTGAAAAA-TAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAAGTAAATT
* * *
7486416 GCTCCTCTAAACAGAGGCACCATGACTTTGGAAAATTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAAGTAAATT
* * * *
7486458 GCTTCTCTAAACAGTGGCACCACAACTTTGGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAAGTAAATT
*
7486500 ACTCCTCTAAACAGAGGCACCACGACTTTGAAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAAGTAAATT
*
7486542 ACTCCT
1 GCTCCT
7486548 TGACAATCAT
Statistics
Matches: 232, Mismatches: 21, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
41 102 0.44
42 130 0.56
ACGTcount: A:0.37, C:0.22, G:0.15, T:0.25
Consensus pattern (42 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAAGTAAATT
Found at i:7486391 original size:83 final size:83
Alignment explanation
Indices: 7486251--7486541 Score: 424
Period size: 83 Copynumber: 3.5 Consensus size: 83
7486241 TTTTACCAAA
** * * * * *
7486251 GCTCCTCTAAATGGAGGCTCAATGACTTTG-AAAAGTAAATTGCTCCTCTAAACAGAGGCACCAT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAAGTAAATTGCTCTTCTAAACAGAGGCACCAC
7486315 AACTTTGAAAAATAAATT
66 AACTTTGAAAAATAAATT
7486333 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAAGTAAATTGCTCTTCTAAACAGAGGCACCAC
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAAGTAAATTGCTCTTCTAAACAGAGGCACCAC
*
7486398 GACTTTGAAAAATAAATT
66 AACTTTGAAAAATAAATT
* * * *
7486416 GCTCCTCTAAACAGAGGCACCATGACTTTGGAAAATTAAATTGCT-TCTCTAAACAGTGGCACCA
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAAGTAAATTGCTCT-TCTAAACAGAGGCACCA
*
7486480 CAACTTTGGAAAAGTAAATT
65 CAACTTT-GAAAAATAAATT
*
7486500 ACTCCTCTAAACAGAGGCACCACGACTTTGAAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAAGTAAATT
7486542 ACTCCTTGAC
Statistics
Matches: 188, Mismatches: 18, Indels: 4
0.90 0.09 0.02
Matches are distributed among these distances:
82 26 0.14
83 113 0.60
84 49 0.26
ACGTcount: A:0.38, C:0.22, G:0.16, T:0.25
Consensus pattern (83 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAAGTAAATTGCTCTTCTAAACAGAGGCACCAC
AACTTTGAAAAATAAATT
Found at i:7487843 original size:20 final size:19
Alignment explanation
Indices: 7487820--7487859 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 19
7487810 CTTCTTTCTT
* *
7487820 TCTTTTTTTTTTTTTCATCA
1 TCTTCTTTTTGTTTTC-TCA
7487840 TCTTCTTTTTGTTTTCTCA
1 TCTTCTTTTTGTTTTCTCA
7487859 T
1 T
7487860 TGTTCACCTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 4 0.22
20 14 0.78
ACGTcount: A:0.07, C:0.17, G:0.03, T:0.72
Consensus pattern (19 bp):
TCTTCTTTTTGTTTTCTCA
Found at i:7491828 original size:59 final size:60
Alignment explanation
Indices: 7491763--7491877 Score: 187
Period size: 59 Copynumber: 1.9 Consensus size: 60
7491753 TTGTGTAGGA
7491763 AAAATTGATACTTTCAACTTTTCCATAAAAATA-TATTTTGGAAATTTTGATTTTCAAGG
1 AAAATTGATACTTTCAACTTTTCCATAAAAATATTATTTTGGAAATTTTGATTTTCAAGG
* * *
7491822 AAAATTGATACTTTCAACTTTTCCCTAAAAATATTTATTTTGGAATTTTTTATTTT
1 AAAATTGATACTTTCAACTTTTCCATAAAAATA-TTATTTTGGAAATTTTGATTTT
7491878 TATTTAAAGA
Statistics
Matches: 51, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
59 32 0.63
61 19 0.37
ACGTcount: A:0.35, C:0.10, G:0.08, T:0.47
Consensus pattern (60 bp):
AAAATTGATACTTTCAACTTTTCCATAAAAATATTATTTTGGAAATTTTGATTTTCAAGG
Found at i:7491904 original size:7 final size:7
Alignment explanation
Indices: 7491894--7491960 Score: 57
Period size: 8 Copynumber: 9.0 Consensus size: 7
7491884 AAGAAAATAG
7491894 AATAAAA
1 AATAAAA
7491901 AATAAATA
1 AATAAA-A
7491909 AATAAATA
1 AATAAA-A
*
7491917 AA-AAAT
1 AATAAAA
7491923 AA-AAAA
1 AATAAAA
7491929 AATAAAGAA
1 AAT-AA-AA
7491938 AAGTAAAA
1 AA-TAAAA
7491946 AGATAAAA
1 A-ATAAAA
7491954 AATAAAA
1 AATAAAA
7491961 TAAAGATAAA
Statistics
Matches: 52, Mismatches: 2, Indels: 12
0.79 0.03 0.18
Matches are distributed among these distances:
6 7 0.13
7 15 0.29
8 22 0.42
9 7 0.13
10 1 0.02
ACGTcount: A:0.81, C:0.00, G:0.04, T:0.15
Consensus pattern (7 bp):
AATAAAA
Found at i:7491904 original size:12 final size:11
Alignment explanation
Indices: 7491887--7491964 Score: 59
Period size: 12 Copynumber: 6.7 Consensus size: 11
7491877 TTATTTAAAG
7491887 AAAATAGAATAA
1 AAAATA-AATAA
7491899 AAAATAAATAA
1 AAAATAAATAA
*
7491910 ATAAATAAAAAA
1 A-AAATAAATAA
*
7491922 TAAAAAAAATAA
1 -AAAATAAATAA
* *
7491934 AGAA-AAGTAA
1 AAAATAAATAA
*
7491944 AAAGATAAAAAA
1 AAA-ATAAATAA
7491956 TAAAATAAA
1 -AAAATAAA
7491965 GATAAAAGAA
Statistics
Matches: 53, Mismatches: 8, Indels: 10
0.75 0.11 0.14
Matches are distributed among these distances:
10 7 0.13
11 10 0.19
12 32 0.60
13 4 0.08
ACGTcount: A:0.79, C:0.00, G:0.05, T:0.15
Consensus pattern (11 bp):
AAAATAAATAA
Found at i:7491918 original size:19 final size:18
Alignment explanation
Indices: 7491894--7491964 Score: 76
Period size: 16 Copynumber: 3.9 Consensus size: 18
7491884 AAGAAAATAG
7491894 AATAAAAAATAAATAAATA
1 AATAAAAAATAAATAAA-A
7491913 AATAAAAAAT-AA-AAAA
1 AATAAAAAATAAATAAAA
* *
7491929 AATAAAGAA-AAGTAAAA
1 AATAAAAAATAAATAAAA
7491946 AGATAAAAAATAAAATAAA
1 A-ATAAAAAAT-AAATAAA
7491965 GATAAAAGAA
Statistics
Matches: 43, Mismatches: 4, Indels: 9
0.77 0.07 0.16
Matches are distributed among these distances:
16 10 0.23
17 8 0.19
18 9 0.21
19 10 0.23
20 6 0.14
ACGTcount: A:0.80, C:0.00, G:0.04, T:0.15
Consensus pattern (18 bp):
AATAAAAAATAAATAAAA
Found at i:7491920 original size:20 final size:19
Alignment explanation
Indices: 7491887--7491964 Score: 65
Period size: 20 Copynumber: 4.1 Consensus size: 19
7491877 TTATTTAAAG
7491887 AAAATAGAATAA-AAAATAA
1 AAAATA-AATAAGAAAATAA
7491906 ATAAATAAATAA-AAAAT-A
1 A-AAATAAATAAGAAAATAA
7491924 AAAA-AAATAAAGAAAAGTAA
1 AAAATAAAT-AAGAAAA-TAA
* *
7491944 AAAGATAAAAAATAAAATAA
1 AAA-ATAAATAAGAAAATAA
7491964 A
1 A
7491965 GATAAAAGAA
Statistics
Matches: 50, Mismatches: 2, Indels: 13
0.77 0.03 0.20
Matches are distributed among these distances:
16 4 0.08
17 5 0.10
18 6 0.12
19 12 0.24
20 13 0.26
21 7 0.14
22 3 0.06
ACGTcount: A:0.79, C:0.00, G:0.05, T:0.15
Consensus pattern (19 bp):
AAAATAAATAAGAAAATAA
Found at i:7491939 original size:10 final size:9
Alignment explanation
Indices: 7491897--7491955 Score: 50
Period size: 9 Copynumber: 6.4 Consensus size: 9
7491887 AAAATAGAAT
7491897 AAAAAATAA
1 AAAAAATAA
*
7491906 ATAAATAA-AT
1 A-AAA-AATAA
7491916 AAAAAATAA
1 AAAAAATAA
7491925 AAAAAATAA
1 AAAAAATAA
*
7491934 AGAAAAGT-A
1 A-AAAAATAA
*
7491943 AAAAGATAA
1 AAAAAATAA
7491952 AAAA
1 AAAA
7491956 TAAAATAAAG
Statistics
Matches: 40, Mismatches: 5, Indels: 10
0.73 0.09 0.18
Matches are distributed among these distances:
8 6 0.15
9 22 0.55
10 10 0.25
11 2 0.05
ACGTcount: A:0.81, C:0.00, G:0.05, T:0.14
Consensus pattern (9 bp):
AAAAAATAA
Found at i:7492052 original size:16 final size:15
Alignment explanation
Indices: 7492031--7492066 Score: 54
Period size: 16 Copynumber: 2.3 Consensus size: 15
7492021 AATCTGGAGT
7492031 GGCTCGGATCGCGCTC
1 GGCTCGGATCG-GCTC
*
7492047 GGCTCGGTTCGGCTC
1 GGCTCGGATCGGCTC
7492062 GGCTC
1 GGCTC
7492067 AAGGAAGAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 9 0.47
16 10 0.53
ACGTcount: A:0.03, C:0.36, G:0.39, T:0.22
Consensus pattern (15 bp):
GGCTCGGATCGGCTC
Found at i:7493363 original size:60 final size:59
Alignment explanation
Indices: 7492979--7493457 Score: 648
Period size: 58 Copynumber: 7.8 Consensus size: 59
7492969 TTTTTTTTTT
*
7492979 TAAGGAAAATTGATACTTTCAACTTTTCCCCAAAAATA--TTTTTTGGAAATTTCGATTT-
1 TAAGGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTGGAAATTT--ATTTC
*
7493037 TCAAGGAAAATTGATACTTTCAACTTTTCCCCAAAAATACTTTTTTTTTTGGAAATTTATTTTTC
1 T-AAGGAAAATTGATACTTTCAACTTTTCCCTAAAAATA---TTTTTTTTGGAAATTTA--TTTC
7493102 TTTTAAGGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTTTGGAAATTTATTTC
1 ---TAAGGAAAATTGATACTTTCAACTTTTCCCTAAAAATA--TTTTTTTTGGAAATTTATTTC
*
7493166 TAAGGGAAAATTGATACTTTCAATTTTTCCCTAAAAATA--TTTTTTGGAAATTTA-TTC
1 TAA-GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTGGAAATTTATTTC
*
7493223 TTAAGGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTT-GAAATTTTTTTC
1 -TAAGGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTGGAAATTTATTTC
* *
7493282 TGAGGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTATTTTGGAAATTTATTTC
1 TAAGGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTT-TTTTGGAAATTTATTTC
7493342 TAAGGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTATTTTGGAAATTTATTTTTC
1 TAAGGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTT-TTTTGGAAATTTA--TTTC
7493404 TTTTAAGGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTTGGAA
1 ---TAAGGAAAATTGATACTTTCAACTTTTCCCTAAAAATA-TTTTTTTTGGAA
7493458 TTTTTTTATT
Statistics
Matches: 387, Mismatches: 9, Indels: 43
0.88 0.02 0.10
Matches are distributed among these distances:
57 37 0.10
58 66 0.17
59 50 0.13
60 65 0.17
61 3 0.01
62 39 0.10
64 21 0.05
65 46 0.12
66 23 0.06
67 36 0.09
68 1 0.00
ACGTcount: A:0.33, C:0.12, G:0.09, T:0.46
Consensus pattern (59 bp):
TAAGGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTGGAAATTTATTTC
Found at i:7493550 original size:12 final size:11
Alignment explanation
Indices: 7493530--7493589 Score: 50
Period size: 12 Copynumber: 5.2 Consensus size: 11
7493520 AACCTAATCT
*
7493530 AATAAATAAAA
1 AATAAAAAAAA
7493541 AATAAAATAAACA
1 AATAAAA-AAA-A
*
7493554 AATAAACAAAGA
1 AATAAA-AAAAA
7493566 AAT-AAAAAAA
1 AATAAAAAAAA
*
7493576 ATTCAAAAAAAA
1 AAT-AAAAAAAA
7493588 AA
1 AA
7493590 ACCTGGAGCG
Statistics
Matches: 39, Mismatches: 5, Indels: 9
0.74 0.09 0.17
Matches are distributed among these distances:
10 6 0.15
11 8 0.21
12 15 0.38
13 9 0.23
14 1 0.03
ACGTcount: A:0.80, C:0.05, G:0.02, T:0.13
Consensus pattern (11 bp):
AATAAAAAAAA
Found at i:7493930 original size:20 final size:20
Alignment explanation
Indices: 7493905--7493942 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
7493895 GAACATCGGT
* *
7493905 GCCGGATTCTGGAAATTTTC
1 GCCGGAATCTAGAAATTTTC
7493925 GCCGGAATCTAGAAATTT
1 GCCGGAATCTAGAAATTT
7493943 CACCGGAAGT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.32
Consensus pattern (20 bp):
GCCGGAATCTAGAAATTTTC
Found at i:7493948 original size:19 final size:20
Alignment explanation
Indices: 7493906--7493950 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
7493896 AACATCGGTG
* * *
7493906 CCGGATTCTGGAAATTTTCG
1 CCGGAATCTAGAAATTTTCA
7493926 CCGGAATCTAGAAA-TTTCA
1 CCGGAATCTAGAAATTTTCA
7493945 CCGGAA
1 CCGGAA
7493951 GTTGGCCGGA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
19 10 0.45
20 12 0.55
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (20 bp):
CCGGAATCTAGAAATTTTCA
Found at i:7494866 original size:1 final size:1
Alignment explanation
Indices: 7494862--7494928 Score: 53
Period size: 1 Copynumber: 67.0 Consensus size: 1
7494852 TTATTTTTGA
* ** * * * * * *
7494862 TTTTTTTTTATTTTTTGATTTTTTTTGTTTTTGTTTTTTTGTTTTTGTTTTTTTGTTGTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
7494927 TT
1 TT
7494929 GGCCGAAGCT
Statistics
Matches: 49, Mismatches: 17, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
1 49 1.00
ACGTcount: A:0.03, C:0.00, G:0.10, T:0.87
Consensus pattern (1 bp):
T
Found at i:7494876 original size:18 final size:17
Alignment explanation
Indices: 7494849--7494901 Score: 74
Period size: 17 Copynumber: 3.2 Consensus size: 17
7494839 CAACTCAACA
7494849 TTTTTATTTTTGATTTT
1 TTTTTATTTTTGATTTT
7494866 TTTTTATTTTTTGA-TTT
1 TTTTTA-TTTTTGATTTT
*
7494883 TTTTTGTTTTTG-TTTT
1 TTTTTATTTTTGATTTT
7494899 TTT
1 TTT
7494902 GTTTTTGTTT
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
16 12 0.36
17 14 0.42
18 7 0.21
ACGTcount: A:0.08, C:0.00, G:0.08, T:0.85
Consensus pattern (17 bp):
TTTTTATTTTTGATTTT
Found at i:7494898 original size:14 final size:14
Alignment explanation
Indices: 7494855--7494929 Score: 84
Period size: 14 Copynumber: 5.4 Consensus size: 14
7494845 AACATTTTTA
*
7494855 TTTTTGATTTT-TT
1 TTTTTGTTTTTGTT
*
7494868 TTTAT-TTTTTGATTT
1 TTTTTGTTTTTG--TT
7494883 TTTTTGTTTTTGTT
1 TTTTTGTTTTTGTT
7494897 TTTTTGTTTTTGTT
1 TTTTTGTTTTTGTT
*
7494911 TTTTTGTTGTT-TT
1 TTTTTGTTTTTGTT
7494924 TTTTTG
1 TTTTTG
7494930 GCCGAAGCTC
Statistics
Matches: 54, Mismatches: 4, Indels: 8
0.82 0.06 0.12
Matches are distributed among these distances:
12 4 0.07
13 12 0.22
14 26 0.48
15 6 0.11
16 6 0.11
ACGTcount: A:0.04, C:0.00, G:0.12, T:0.84
Consensus pattern (14 bp):
TTTTTGTTTTTGTT
Found at i:7494899 original size:31 final size:30
Alignment explanation
Indices: 7494862--7494928 Score: 93
Period size: 30 Copynumber: 2.3 Consensus size: 30
7494852 TTATTTTTGA
*
7494862 TTTTTTTTTAT-TTTTTGATTTTTT-TTGT
1 TTTTTTTTTTTGTTTTTGATTTTTTGTTGT
*
7494890 TTTTGTTTTTTTGTTTTTGTTTTTTTGTTGT
1 TTTT-TTTTTTTGTTTTTGATTTTTTGTTGT
7494921 TTTTTTTT
1 TTTTTTTT
7494929 GGCCGAAGCT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
28 4 0.12
29 6 0.18
30 16 0.47
31 8 0.24
ACGTcount: A:0.03, C:0.00, G:0.10, T:0.87
Consensus pattern (30 bp):
TTTTTTTTTTTGTTTTTGATTTTTTGTTGT
Found at i:7494915 original size:17 final size:17
Alignment explanation
Indices: 7494849--7494928 Score: 73
Period size: 16 Copynumber: 4.9 Consensus size: 17
7494839 CAACTCAACA
*
7494849 TTTTTATTTTTGATTTTT
1 TTTTTGTTTTTG-TTTTT
*
7494867 TTTTAT-TTTTTG-ATTT
1 TTTT-TGTTTTTGTTTTT
7494883 TTTTTGTTTTTG---TT
1 TTTTTGTTTTTGTTTTT
7494897 TTTTTGTTTTTGTTTTT
1 TTTTTGTTTTTGTTTTT
*
7494914 TTGTTGTTTTT-TTTT
1 TTTTTGTTTTTGTTTT
7494929 GGCCGAAGCT
Statistics
Matches: 55, Mismatches: 2, Indels: 12
0.80 0.03 0.17
Matches are distributed among these distances:
14 14 0.25
15 1 0.02
16 17 0.31
17 12 0.22
18 10 0.18
19 1 0.02
ACGTcount: A:0.05, C:0.00, G:0.10, T:0.85
Consensus pattern (17 bp):
TTTTTGTTTTTGTTTTT
Found at i:7494981 original size:41 final size:42
Alignment explanation
Indices: 7494936--7495754 Score: 1080
Period size: 41 Copynumber: 20.0 Consensus size: 42
7494926 TTTGGCCGAA
* * *
7494936 GCTCCTCTAAACAGAGACTCAACGACTTTTG-AAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTTGAAAAGTAAATT
* *
7494977 GCTCCTCTAAATAGAGGCA--ACGGAC-TTTGGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCAC-GACTTTTGAAAAGTAAATT
* * *
7495017 GCTCCTCTCAACAGAGGCACCACGACTTTGGAAAAATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTTGAAAAGTAAATT
*
7495059 GCTCCTCTCAACAGAGGCACCACGAC-TTTGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTTGAAAAGTAAATT
* * *
7495100 GCTCCTCTAAACAGGGGCACCACGACTTTGGAAAAATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTTGAAAAGTAAATT
*
7495142 GCTCCTCTCAACAGAGGCACCACGAC-TTTGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTTGAAAAGTAAATT
7495183 GCTCCTCTAAACAGAGGCA--ACGAAC-TTTGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACG-ACTTTTGAAAAGTAAATT
* *
7495223 GCTCCTCTAAACAGAGGTACCATGAC-TTTGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTTGAAAAGTAAATT
7495264 GCTCCTCTAAACAGAGGCA--ACGAAC-TTTGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACG-ACTTTTGAAAAGTAAATT
*
7495304 GCTCCTCTAAACAGAGGCACCACGAC-TTTGGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTTGAAAAGTAAATT
* * *
7495345 GCTCCTCTCAACAGAGGTACCACGACTTTGGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTTGAAAAGTAAATT
* * *
7495387 GCTCCTCTCAACAGAGGTACCACGAC-TTTGAAAAAATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTTG-AAAAGTAAATT
* *
7495429 ACTCCTCTAAACAGAGGCACCACGAC-TTTGGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTTGAAAAGTAAATT
* * * *
7495470 GCTCCTCTCAACAGAGGTACCACGACTTTGGAAAAATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTTGAAAAGTAAATT
*
7495512 GCTCCTCTAAACAGAGGCACCACGAC-TTTGGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTTGAAAAGTAAATT
*
7495553 GCTCCTCTCAACAGAGGCA--ACGAAC-TTTGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACG-ACTTTTGAAAAGTAAATT
7495593 GCTCCTCTAAACAGAGGCA--ACGAAC-TTTGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACG-ACTTTTGAAAAGTAAATT
* * *
7495633 GCTCCTCTCAACAGAGGTACCACGACTTTAGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTTGAAAAGTAAATT
7495675 GCTCCTCTAAACAGAGGCA--ACGAAC-TTTGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACG-ACTTTTGAAAAGTAAATT
*
7495715 GCTCCTCTAAACAGAGGCACCACGAC-TTTGGAAAGTAAAT
1 GCTCCTCTAAACAGAGGCACCACGACTTTTGAAAAGTAAAT
7495755 ACTCCTAGAC
Statistics
Matches: 700, Mismatches: 56, Indels: 44
0.88 0.07 0.05
Matches are distributed among these distances:
39 14 0.02
40 209 0.30
41 246 0.35
42 231 0.33
ACGTcount: A:0.36, C:0.23, G:0.18, T:0.23
Consensus pattern (42 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTTGAAAAGTAAATT
Found at i:7495105 original size:83 final size:83
Alignment explanation
Indices: 7494936--7495754 Score: 1190
Period size: 83 Copynumber: 10.0 Consensus size: 83
7494926 TTTGGCCGAA
* * * * * *
7494936 GCTCCTCTAAACAGAGACTCAACGACTTTTG-AAAGTAAATTGCTCCTCTAAATAGAGGCA--AC
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATTGCTCCTCTCAACAGAGGCACCAC
*
7494998 GGACTTTGGAAAGTAAATT
66 -GACTTTGAAAAGTAAATT
* *
7495017 GCTCCTCTCAACAGAGGCACCACGACTTTGGAAAAATAAATTGCTCCTCTCAACAGAGGCACCAC
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATTGCTCCTCTCAACAGAGGCACCAC
7495082 GACTTTGAAAAGTAAATT
66 GACTTTGAAAAGTAAATT
* *
7495100 GCTCCTCTAAACAGGGGCACCACGACTTTGGAAAAATAAATTGCTCCTCTCAACAGAGGCACCAC
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATTGCTCCTCTCAACAGAGGCACCAC
7495165 GACTTTGAAAAGTAAATT
66 GACTTTGAAAAGTAAATT
* *
7495183 GCTCCTCTAAACAGAGGCA--ACGAACTTT-GAAAAGTAAATTGCTCCTCTAAACAGAGGTACCA
1 GCTCCTCTAAACAGAGGCACCACG-ACTTTGGAAAAGTAAATTGCTCCTCTCAACAGAGGCACCA
*
7495245 TGACTTTGAAAAGTAAATT
65 CGACTTTGAAAAGTAAATT
*
7495264 GCTCCTCTAAACAGAGGCA--ACGAACTTT-GAAAAGTAAATTGCTCCTCTAAACAGAGGCACCA
1 GCTCCTCTAAACAGAGGCACCACG-ACTTTGGAAAAGTAAATTGCTCCTCTCAACAGAGGCACCA
*
7495326 CGACTTTGGAAAGTAAATT
65 CGACTTTGAAAAGTAAATT
* * *
7495345 GCTCCTCTCAACAGAGGTACCACGACTTTGGAAAAGTAAATTGCTCCTCTCAACAGAGGTACCAC
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATTGCTCCTCTCAACAGAGGCACCAC
*
7495410 GACTTTGAAAAAATAAATT
66 GACTTTG-AAAAGTAAATT
* *
7495429 ACTCCTCTAAACAGAGGCACCACGACTTTGG-AAAGTAAATTGCTCCTCTCAACAGAGGTACCAC
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATTGCTCCTCTCAACAGAGGCACCAC
*
7495493 GACTTTGGAAAAATAAATT
66 GACTTT-GAAAAGTAAATT
7495512 GCTCCTCTAAACAGAGGCACCACGACTTTGG-AAAGTAAATTGCTCCTCTCAACAGAGGCA--AC
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATTGCTCCTCTCAACAGAGGCACCAC
7495574 GAACTTTGAAAAGTAAATT
66 G-ACTTTGAAAAGTAAATT
*
7495593 GCTCCTCTAAACAGAGGCA--ACGAACTTT-GAAAAGTAAATTGCTCCTCTCAACAGAGGTACCA
1 GCTCCTCTAAACAGAGGCACCACG-ACTTTGGAAAAGTAAATTGCTCCTCTCAACAGAGGCACCA
7495655 CGACTTTAGAAAAGTAAATT
65 CGACTTT-GAAAAGTAAATT
*
7495675 GCTCCTCTAAACAGAGGCA--ACGAACTTT-GAAAAGTAAATTGCTCCTCTAAACAGAGGCACCA
1 GCTCCTCTAAACAGAGGCACCACG-ACTTTGGAAAAGTAAATTGCTCCTCTCAACAGAGGCACCA
*
7495737 CGACTTTGGAAAGTAAAT
65 CGACTTTGAAAAGTAAAT
7495755 ACTCCTAGAC
Statistics
Matches: 688, Mismatches: 35, Indels: 30
0.91 0.05 0.04
Matches are distributed among these distances:
79 4 0.01
80 33 0.05
81 221 0.32
82 123 0.18
83 267 0.39
84 40 0.06
ACGTcount: A:0.36, C:0.23, G:0.18, T:0.23
Consensus pattern (83 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATTGCTCCTCTCAACAGAGGCACCAC
GACTTTGAAAAGTAAATT
Found at i:7495711 original size:370 final size:364
Alignment explanation
Indices: 7494936--7495754 Score: 1293
Period size: 370 Copynumber: 2.2 Consensus size: 364
7494926 TTTGGCCGAA
* * *
7494936 GCTCCTCTAAACAGAGACTCAACGACTTTTGAAAGTAAATTGCTCCTCTAAATAGAGG-CAACGG
1 GCTCCTCTAAACAGAG--GCAACGAC-TTTGAAAGTAAATTGCTCCTCTAAACAGAGGACCAC-G
* *
7495000 ACTTTGGAAAGTAAATTGCTCCTCTCAACAGAGGCACCACGACTTTGGAAAAATAAATTGCTCCT
62 ACTTTGGAAAGTAAATTGCTCCTCTCAACAGAGGCACCACGACTTTGAAAAAATAAATTACTCCT
* *
7495065 CTCAACAGAGGCACCACGACTTTGAAAAGTAAATTGCTCCTCTAAACAGGGGCACCACGACTTTG
127 CTAAACAGAGGCACCACGACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTG
*
7495130 GAAAAATAAATTGCTCCTCTCAACAGAGGCACCACGACTTTGAAAAGTAAATTGCTCCTCTAAAC
192 GAAAAATAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGAAAAGTAAATTGCTCCTCTAAAC
*
7495195 AGAGGCAACGAACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGTACCATGACTTTGAAAAGTA
257 AGAGGCAACGAACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGAACCA-GACTTTGAAAAGTA
7495260 AATTGCTCCTCTAAACAGAGGCAACGAACTTTGAAAAGTAAATT
321 AATTGCTCCTCTAAACAGAGGCAACGAACTTTGAAAAGTAAATT
*
7495304 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATTGCTCCTCTCAACAGAGGTACCACG
1 GCTCCTCTAAACAGAGGCA--ACGACTTT-GAAAGTAAATTGCTCCTCTAAACAGAGG-ACCACG
*
7495369 ACTTTGGAAAAGTAAATTGCTCCTCTCAACAGAGGTACCACGACTTTGAAAAAATAAATTACTCC
62 ACTTTGG-AAAGTAAATTGCTCCTCTCAACAGAGGCACCACGACTTTGAAAAAATAAATTACTCC
* * *
7495434 TCTAAACAGAGGCACCACGACTTTGGAAAGTAAATTGCTCCTCTCAACAGAGGTACCACGACTTT
126 TCTAAACAGAGGCACCACGACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTT
* *
7495499 GGAAAAATAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATTGCTCCTCTCAA
191 GGAAAAATAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGAAAAGTAAATTGCTCCTCTAAA
*
7495564 CAGAGGCAACGAACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCAACGA-ACTTTGAAAAGT
256 CAGAGGCAACGAACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGG-AACCAGACTTTGAAAAGT
* *
7495628 AAATTGCTCCTCTCAACAGAGGTACCACG-ACTTTAGAAAAGTAAATT
320 AAATTGCTCCTCTAAACAGAGG--CAACGAACTTT-GAAAAGTAAATT
7495675 GCTCCTCTAAACAGAGGCAACGAACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGA
1 GCTCCTCTAAACAGAGGCAACG-ACTTTG-AAAGTAAATTGCTCCTCTAAACAGAGG-ACCACGA
7495740 CTTTGGAAAGTAAAT
63 CTTTGGAAAGTAAAT
7495755 ACTCCTAGAC
Statistics
Matches: 418, Mismatches: 21, Indels: 23
0.90 0.05 0.05
Matches are distributed among these distances:
366 2 0.00
367 3 0.01
368 47 0.11
369 54 0.13
370 274 0.66
371 38 0.09
ACGTcount: A:0.36, C:0.23, G:0.18, T:0.23
Consensus pattern (364 bp):
GCTCCTCTAAACAGAGGCAACGACTTTGAAAGTAAATTGCTCCTCTAAACAGAGGACCACGACTT
TGGAAAGTAAATTGCTCCTCTCAACAGAGGCACCACGACTTTGAAAAAATAAATTACTCCTCTAA
ACAGAGGCACCACGACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAA
AATAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGAAAAGTAAATTGCTCCTCTAAACAGAG
GCAACGAACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGAACCAGACTTTGAAAAGTAAATTG
CTCCTCTAAACAGAGGCAACGAACTTTGAAAAGTAAATT
Found at i:7497029 original size:30 final size:30
Alignment explanation
Indices: 7496988--7497053 Score: 91
Period size: 30 Copynumber: 2.2 Consensus size: 30
7496978 TTTGAATCTC
7496988 TTTTT-TCATTTTCTC-ATTTTTTCCTTCTT
1 TTTTTCTCATTTTCTCTATTTTTTCCTT-TT
* *
7497017 TTTTTCTCATTTTTTCTTTTTTTTCCTTTT
1 TTTTTCTCATTTTCTCTATTTTTTCCTTTT
7497047 TTTTTCT
1 TTTTTCT
7497054 TTTTTTTTCA
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
29 5 0.15
30 18 0.55
31 10 0.30
ACGTcount: A:0.05, C:0.18, G:0.00, T:0.77
Consensus pattern (30 bp):
TTTTTCTCATTTTCTCTATTTTTTCCTTTT
Found at i:7497030 original size:38 final size:38
Alignment explanation
Indices: 7496984--7497064 Score: 94
Period size: 38 Copynumber: 2.2 Consensus size: 38
7496974 TCAATTTGAA
7496984 TCTC-TTTTTTC-ATTTTCTCATTTTTTCCTTCTTTTTT
1 TCTCATTTTTTCTATTTTCTCATTTTTT-CTTCTTTTTT
* * * *
7497021 TCTCATTTTTTCTTTTTTTTCCTTTTTTTTTCTTTTTT
1 TCTCATTTTTTCTATTTTCTCATTTTTTCTTCTTTTTT
*
7497059 TTTCAT
1 TCTCAT
7497065 CATTTTTTTT
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
37 4 0.11
38 21 0.57
39 12 0.32
ACGTcount: A:0.05, C:0.19, G:0.00, T:0.77
Consensus pattern (38 bp):
TCTCATTTTTTCTATTTTCTCATTTTTTCTTCTTTTTT
Found at i:7497061 original size:11 final size:10
Alignment explanation
Indices: 7497004--7497062 Score: 73
Period size: 10 Copynumber: 5.8 Consensus size: 10
7496994 CATTTTCTCA
*
7497004 TTTTTTCCTT
1 TTTTTTTCTT
*
7497014 CTTTTTTTCTC
1 -TTTTTTTCTT
*
7497025 ATTTTTTCTT
1 TTTTTTTCTT
*
7497035 TTTTTTCCTT
1 TTTTTTTCTT
7497045 TTTTTTTCTT
1 TTTTTTTCTT
7497055 TTTTTTTC
1 TTTTTTTC
7497063 ATCATTTTTT
Statistics
Matches: 41, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
10 33 0.80
11 8 0.20
ACGTcount: A:0.02, C:0.17, G:0.00, T:0.81
Consensus pattern (10 bp):
TTTTTTTCTT
Found at i:7497072 original size:11 final size:10
Alignment explanation
Indices: 7496996--7497059 Score: 69
Period size: 10 Copynumber: 6.4 Consensus size: 10
7496986 TCTTTTTTCA
7496996 TTTTCTCATTT
1 TTTTCTC-TTT
*
7497007 TTTCCTTCTTT
1 TTTTC-TCTTT
*
7497018 TTTTCTCATT
1 TTTTCTCTTT
7497028 TTTTCT-TTT
1 TTTTCTCTTT
7497037 TTTTC-CTTT
1 TTTTCTCTTT
*
7497046 TTTTTTCTTT
1 TTTTCTCTTT
7497056 TTTT
1 TTTT
7497060 TTCATCATTT
Statistics
Matches: 45, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
9 14 0.31
10 18 0.40
11 11 0.24
12 2 0.04
ACGTcount: A:0.03, C:0.17, G:0.00, T:0.80
Consensus pattern (10 bp):
TTTTCTCTTT
Found at i:7497073 original size:22 final size:21
Alignment explanation
Indices: 7496996--7497073 Score: 97
Period size: 20 Copynumber: 3.7 Consensus size: 21
7496986 TCTTTTTTCA
*
7496996 TTTTCTCATTTTTTCCTTCTTT
1 TTTTCTCATTTTTTTCTT-TTT
7497018 TTTTCTCA-TTTTTTCTTTTT
1 TTTTCTCATTTTTTTCTTTTT
* *
7497038 TTTCCT-TTTTTTTTCTTTTT
1 TTTTCTCATTTTTTTCTTTTT
7497058 TTTTCATCATTTTTTT
1 TTTTC-TCATTTTTTT
7497074 TCATCCATTG
Statistics
Matches: 48, Mismatches: 5, Indels: 6
0.81 0.08 0.10
Matches are distributed among these distances:
20 24 0.50
21 9 0.19
22 15 0.31
ACGTcount: A:0.05, C:0.17, G:0.00, T:0.78
Consensus pattern (21 bp):
TTTTCTCATTTTTTTCTTTTT
Done.