Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 360 of 402
Found at i:32906900 original size:701 final size:705
Alignment explanation
Indices: 32905581--32907079 Score: 1672
Period size: 701 Copynumber: 2.1 Consensus size: 705
32905571 CCAGCTGGGG
* * * * *
32905581 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCATTGAG
* * * * * *
32905645 CCGGCCGA-AGAGGCAGAATGCTCAAGCCAGGGATCGGCCTGATCCCCTCTGTGTGCTGCTGATC
65 CCGGCCGAGAGAGGCATAATGCGCAAACCAGGGATCAGCCCGATCCCCTCTATGTGCTGCTGATC
* * * *
32905709 CTGCTGCCGCAACCCTCGATTCGGTCCGAACTTAGTCTGGGAATGAACTTCATATGCTTAGACTA
130 CTGCTGCCGCAAACCTCGATCCGGTCCGAACTTAGACTAGGAATGAACTTCATATGCTTAGACTA
* * * ** * *
32905774 GGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACTAGCGTGCGCGTGCTCAGCCGACATGGG
195 GGGACGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGCGCACGCTCAACCGACACGGG
* * * *
32905839 AGGCTGACTGGAGAGGCATAATGCGTAAGCCAGGGATCAGCCCAGTCCCCCTCTACATGCTGTCG
260 AGGCGGACTGGAGAGGCATAATGCGCAAGCCAGGGATCAACCCAGTCCCCCTCTACATGCTGCCG
* * *
32905904 ATCCCACTGCCATTCCTGCTGCCACAACCCTCAGTCTGACTGGGGCTTAGACATGGAATGAACTC
325 ATCCCACTGCCAGTCCTGCTGCCACAACCCTCAGTCTGACCGAGGCTTAGACATGGAATGAACTC
* * * **
32905969 CATATGCCTAAGCTAACCCACGAAATGAGCGTGCATGCCGAAAAGGTAGAATGCGTAAGCTGGGC
390 CATATACCTAAGCT-A-CCACG--A-GAGCGTACAGGCCGAAAAGGTAGAATGCACAAGCTGGGC
* * *
32906034 ATCGACCCGATCCCCCTCTGTGTGCTACCGATCCTACTGTTGGTCTTGCTACCACAACCCTCAGT
450 ATCGACCCGATCCCCCCCTGCGTGCTACCGATCCTACTGCTGGTCTTGCTACCACAACCCTCAGT
* * * *
32906099 CTGGTCTGATCTTTGATTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCT
515 CCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCT
* * * *
32906164 AAGCCAACCCACGAAACGAGCGTACGGGGGCTCAACCAGCT-GGAGAGGCAGAATGTGCAAGCCG
580 AAGCCAACCCACGAAACAAGCGTACGGGCGCTCAACC-GCTCAGAGAGGCAGAATGCGCAAGCCG
* * * * * * * ** *
32906228 GTGAT-CTGATCGGACCTACTGTGCTGTCGATCCTACT-GTCGTAACCCTCGGTCCG-GTCTGAT
644 GGGATGCCGATCGCACCTA-TGTGCAGTCAATCCTACTACT-GCAACCCTCAATCCGATTC-GAT
* * *
32906290 CTTAGACTGGGAATGAACTCTGTATGCGTAAGTCAACCCACGAAACGAGCGTGCGGGCGTTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCATTGAGC
* *
32906355 CGGCCGAGAG-GGCATAATGCGCAAACCGGGGATCAGCCCGGT-CCCTCCTATGTGCTGCTGATC
66 CGGCCGAGAGAGGCATAATGCGCAAACCAGGGATCAGCCCGATCCCCT-CTATGTGCTGCTGATC
* * * * *
32906418 CTGCTGCTG-AAACCTCGGTCCGGTTCGATCTTAGACTAGGAATGAAC-TCTGTATGCTTAGACT
130 CTGCTGCCGCAAACCTCGATCCGGTCCGAACTTAGACTAGGAATGAACTTC-ATATGCTTAGACT
*
32906481 GGGGACGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGC-CAACGCTCAACCGAC-CG
194 AGGGACGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGCGC-ACGCTCAACCGACACG
* * * ** ** *
32906544 GAGAGGGCGGTC-GGATATGCATAATGCGCAAGCTGGGGATCAACCTGGTCCCCCTCTACGTGCT
258 G-GA-GGCGGACTGGAGAGGCATAATGCGCAAGCCAGGGATCAACCCAGTCCCCCTCTACATGCT
** **
32906608 GCCGATCCTGCTGCCAGTGTTGCTG-CACAACCCTCAGTCTGACCGAGGCTTAGACATGGAATGA
321 GCCGATCCCACTGCCAGTCCTGCTGCCACAACCCTCAGTCTGACCGAGGCTTAGACATGGAATGA
* * * * * * *
32906672 ACTCCGTATACCTAAGCGT-GCA-G-GCGCTTAACCGGCCGGAGAGGTAGAATGCACAAGCCT-G
386 ACTCCATATACCTAAGC-TACCACGAGAGCGT-ACAGGCCGAAAAGGTAGAATGCACAAG-CTGG
** * * ** * *
32906733 GCATCGACCC-AGTCCCCCCCTGCGTGCTGTCGATTCTACTGCTGGTCTTGCTGCTGCACCCCTT
448 GCATCGACCCGA-TCCCCCCCTGCGTGCTACCGATCCTACTGCTGGTCTTGCTACCACAACCCTC
* *
32906797 GGTCCGAT-TCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTAT
512 AGTCCGGTCT-GATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTAT
* * *
32906861 GCCTAAGCCAACCCACGAAACAAGTGTGCGGGCGCTCAACCGGTCAGAGAGGCAGAATGCGCAAG
576 GCCTAAGCCAACCCACGAAACAAGCGTACGGGCGCTCAACCGCTCAGAGAGGCAGAATGCGCAAG
* * *
32906926 CCGGGGATAGGCCCGGTCTCCCCTATGTGCAGTCAATCCTACTACTGCAACCCTCAATCCGATTC
641 CCGGGGAT--G-CCGATCGCACCTATGTGCAGTCAATCCTACTACTGCAACCCTCAATCCGATTC
32906991 GAT
703 GAT
* * * * *
32906994 CTTAAACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTACGGGCATTGAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCATTGAGC
* *
32907059 TGACCG-GAGAGGCATAATGCG
66 CGGCCGAGAGAGGCATAATGCG
32907080 TAAGCCTAGG
Statistics
Matches: 659, Mismatches: 111, Indels: 45
0.81 0.14 0.06
Matches are distributed among these distances:
700 8 0.01
701 190 0.29
702 2 0.00
703 3 0.00
704 104 0.16
705 13 0.02
707 57 0.09
708 165 0.25
709 115 0.17
710 2 0.00
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (705 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCATTGAGC
CGGCCGAGAGAGGCATAATGCGCAAACCAGGGATCAGCCCGATCCCCTCTATGTGCTGCTGATCC
TGCTGCCGCAAACCTCGATCCGGTCCGAACTTAGACTAGGAATGAACTTCATATGCTTAGACTAG
GGACGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGCGCACGCTCAACCGACACGGGA
GGCGGACTGGAGAGGCATAATGCGCAAGCCAGGGATCAACCCAGTCCCCCTCTACATGCTGCCGA
TCCCACTGCCAGTCCTGCTGCCACAACCCTCAGTCTGACCGAGGCTTAGACATGGAATGAACTCC
ATATACCTAAGCTACCACGAGAGCGTACAGGCCGAAAAGGTAGAATGCACAAGCTGGGCATCGAC
CCGATCCCCCCCTGCGTGCTACCGATCCTACTGCTGGTCTTGCTACCACAACCCTCAGTCCGGTC
TGATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCA
ACCCACGAAACAAGCGTACGGGCGCTCAACCGCTCAGAGAGGCAGAATGCGCAAGCCGGGGATGC
CGATCGCACCTATGTGCAGTCAATCCTACTACTGCAACCCTCAATCCGATTCGAT
Found at i:32907383 original size:158 final size:155
Alignment explanation
Indices: 32906836--32907405 Score: 455
Period size: 158 Copynumber: 3.6 Consensus size: 155
32906826 ACTCCATATG
* *
32906836 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGTGTGCGGGCGCTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTACGGGCGCTCAA-
** * * * *
32906901 CGGTCAGAGAGGCAGAATGCGCAAGCCGGGGATAGGCCCGGTCTCCCCTATGTGCAGTCAATCCT
65 CGACCAGAGAGGCAGAATGCGCAAGCCGGGGATAGGCCCGGTCTTCCCTA-CTGCTGTCGATCCT
* * *
32906966 ACTACTGCAACCCTCAATCCGATTCGAT
129 ACTTC-GCAACCCTCGATCCGATCCGAT
* * * ** ** *
32906994 CTTAAAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTACGGGCATTGAA
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTACGGGCGCTCAA
* * * ** * * * * * * *
32907058 CTGACCGGAGAGGCATAATGCGTAAGCCTAGGATCGGCCCAGTCTCTCTCTACGGTTATCGGTCC
65 C-GACCAGAGAGGCAGAATGCGCAAGCCGGGGATAGGCCCGGTCT-TCCCTACTGCTGTCGATCC
* * * * **
32907123 T-GTTACCCAACCCTCGATCCG-GCTGGG
128 TACTT-CGCAACCCTCGATCCGATCCGAT
* * * ** * * *
32907150 GTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCAGGAGCTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTACGGGCGCTCAAC
* ** * * * *
32907215 CAGCTGGAGAGGCAGAATGCGCAAGCCGGGGATTGGCTCGGTCTTCCCTGCATGCTGCCGATCCT
66 GA-CCAGAGAGGCAGAATGCGCAAGCCGGGGATAGGCCCGGTCTTCCCTAC-TGCTGTCGATCCT
32907280 ACTGTCGCAACCCTCGATCCGATCCGAT
129 ACT-TCGCAACCCTCGATCCGATCCGAT
* * * * *
32907308 CTTAGAC-TGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAATAAGCGTACGGGTGCTCAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTACGGGCGCTCA-
* * * *
32907372 TCGACCAGAGAGGCAGGATGTGCAAGCTGGGGAT
64 ACGACCAGAGAGGCAGAATGCGCAAGCCGGGGAT
32907406 CGAACAGGTG
Statistics
Matches: 310, Mismatches: 90, Indels: 24
0.73 0.21 0.06
Matches are distributed among these distances:
155 6 0.02
156 91 0.29
157 34 0.11
158 173 0.56
159 6 0.02
ACGTcount: A:0.26, C:0.28, G:0.26, T:0.20
Consensus pattern (155 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTACGGGCGCTCAAC
GACCAGAGAGGCAGAATGCGCAAGCCGGGGATAGGCCCGGTCTTCCCTACTGCTGTCGATCCTAC
TTCGCAACCCTCGATCCGATCCGAT
Found at i:32913085 original size:26 final size:26
Alignment explanation
Indices: 32913047--32913099 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
32913037 GGCTCAAAAT
32913047 CTTAGACTGGGAATGAACCCCGTATG
1 CTTAGACTGGGAATGAACCCCGTATG
**
32913073 CTTAGACAT-GGAATGAACTTCGTATG
1 CTTAGAC-TGGGAATGAACCCCGTATG
32913099 C
1 C
32913100 CTAATCAAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACCCCGTATG
Found at i:32913795 original size:26 final size:26
Alignment explanation
Indices: 32913766--32913817 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
32913756 CCGATTTGAT
32913766 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
32913792 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
32913818 TCTAAGCCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:32914402 original size:159 final size:158
Alignment explanation
Indices: 32913990--32914425 Score: 427
Period size: 159 Copynumber: 2.8 Consensus size: 158
32913980 TCTGTATGTG
* * * *
32913990 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTGCGAGAGCTCAGCCA
1 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCG
* * * * *
32914055 GCCAGAGAGGTAGAATGCGCAAGCCGGGGAT-TAGCCCGGTCCCCCTGCGTGCTGTCCATCCTGC
66 GCCGGAGAGGTAGAATGCGCAAGCCGGGGATCGAGCCCGATCCCCCTGCGTGCTGACCATCCCGC
* ** *
32914119 TACCGCAACCCTTGGTCCGATCTGATCT
131 TACCACAACCCTCAGTCCGATCTGAGCT
* * * *
32914147 TAGAC-TAGGAATGAACTCCGTATGCCTAAGTCAACCCATGACACGAGCGTGCGGGTGCTGAGCC
1 TAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGCC
* * * * * * * *
32914211 GGCCGGACG-GGCATAATACGTAAGTCGAGGATCGA-CTCGATCCCTCTCTGCGTGCT-ACCGGT
65 GGCCGGA-GAGGTAGAATGCGCAAGCCGGGGATCGAGCCCGATCCC-C-CTGCGTGCTGACC-AT
* * *
32914273 CCCGCTGCCACAACCCTCAGTCCGGT-TGGGGCT
126 CCCGCTACCACAACCCTCAGTCCGATCT-GAGCT
* * * *
32914306 TAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGTTCTTAGCCG
1 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCG
* * * * *
32914371 GTCGGAGAGGTAGAATGCACAAGCCGGGGATC-AGCTCGGTCCCCCTTACGTGCTG
66 GCCGGAGAGGTAGAATGCGCAAGCCGGGGATCGAGCCCGATCCCCC-TGCGTGCTG
32914426 TCGATCCTGC
Statistics
Matches: 222, Mismatches: 45, Indels: 22
0.77 0.16 0.08
Matches are distributed among these distances:
156 1 0.00
157 85 0.38
158 16 0.07
159 119 0.54
160 1 0.00
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.19
Consensus pattern (158 bp):
TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCG
GCCGGAGAGGTAGAATGCGCAAGCCGGGGATCGAGCCCGATCCCCCTGCGTGCTGACCATCCCGC
TACCACAACCCTCAGTCCGATCTGAGCT
Found at i:32914958 original size:158 final size:158
Alignment explanation
Indices: 32914643--32914976 Score: 370
Period size: 158 Copynumber: 2.1 Consensus size: 158
32914633 TTGTTGGTCT
* * * *
32914643 TGCTACCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTGAGCCAA
1 TGCTGCCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
* * * * *
32914708 CCCACGAAATGAGCGTGTGGGCGCTGACCGGCCGGAGAGGCATAATGCGCAAGCTAGGGACCGAC
66 CCCACGAAAAGAGCGTATGGGCGCTCACCGGCCGGAGAGGCAGAATGCGCAAGCGAGGGACCGAC
*
32914773 CCGATCCCCCTCTGCGTACGGTCGATCC
131 CCGATCCCCCTCTGCGTACGCTCGATCC
*
32914801 TGCTGCCACAACCCTCGGTCCAGTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
1 TGCTGCCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
* * * ** * * **
32914866 CCCATGAAACAG-GCGTATGGGTGCTCAGTCGGTTGGAGAGGCGGAATGCGCTAGCCGA-GGATT
66 CCCACGAAA-AGAGCGTATGGGCGCTCA-CCGGCCGGAGAGGCAGAATGCGCAAG-CGAGGGACC
* * *
32914929 GGCCCGATCCCCC-CTGTGTGCTGCT-GATCC
128 GACCCGATCCCCCTCTGCGTAC-GCTCGATCC
** *
32914959 TATTGCCGCAACCCTCGG
1 TGCTGCCACAACCCTCGG
32914977 CCGATCCGAT
Statistics
Matches: 146, Mismatches: 26, Indels: 8
0.81 0.14 0.04
Matches are distributed among these distances:
158 106 0.73
159 38 0.26
160 2 0.01
ACGTcount: A:0.21, C:0.31, G:0.29, T:0.19
Consensus pattern (158 bp):
TGCTGCCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
CCCACGAAAAGAGCGTATGGGCGCTCACCGGCCGGAGAGGCAGAATGCGCAAGCGAGGGACCGAC
CCGATCCCCCTCTGCGTACGCTCGATCC
Found at i:32915217 original size:354 final size:354
Alignment explanation
Indices: 32914798--32915531 Score: 892
Period size: 354 Copynumber: 2.1 Consensus size: 354
32914788 GTACGGTCGA
* * *
32914798 TCCTGCTGCCACAACCCTCGGTCCAGTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGC
1 TCCTGCTGCCACAACCCTCGATCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGC
* ** * * * *
32914863 CAACCCATGAAACAG-GCGTATGGGTGCTCAGTCGGTTGGAGAGGCGGAATGCGCTAGCCGAGGA
66 CAACCAATGAAA-AGAGCGTACAGGCGCTCAGTCGATCGGAGAGGCGGAATGCGCAAGCCGAGGA
* * * *
32914927 TTGGCCCGATCCCCCCTGTGTGCTG-CTGATCCTATTGCCGCAACCCTCG-GCCGATCC-GATCT
130 TTGGCCCGATCCCCCCTGCGTGCTGTC-GATCCTACTGCCACAACCCTCGAGCC-AGCCTGATC-
** * *
32914989 TG-GACTAGGAATGAACTTTGTATGCTTAGA-TTGGGGATGAAC-TCTGTATGCCTAA-CTCAAC
192 TGAGACTAGGAATGAACTCCGTATGCTTAGACAT-GGAATGAACTTC-GTATGCCTAAGC-CAAC
* * * * * * *
32915050 CCACGAAACGAGCGTACGGGCACTTAGCCTGCCGGAGAGGCATAATGCGCAAGTCGGGGATCAGC
254 CCACAAAACGAGCGTACGGGCACTCAGCCGGCCGAAGAGGAAGAATGCGCAAGCCGGGGATCAGC
32915115 CCGATCCCCCTCTACGTGCTACCGATCCCGCTA-TCGG
319 CCGATCCCCC-CTACGTGCTACCGATCCCGCTACT-GG
**
32915152 TCCTGCTGCCACAACCCTCGATCCGGCTGGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGC
1 TCCTGCTGCCACAACCCTCGATCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGC
* * * *
32915217 CAACCAATGAAATGAGCGTGCAGGCGCTCAGTCGATCGGAGAGGTGGAATGCGCAAGTCGAGGAT
66 CAACCAATGAAAAGAGCGTACAGGCGCTCAGTCGATCGGAGAGGCGGAATGCGCAAGCCGAGGAT
* *
32915282 TGGCCCGATCCCCCCTGCGTGCTGTCGATCCTACTGTCACAACCCTCGATCCAGCCTGATCTGAG
131 TGGCCCGATCCCCCCTGCGTGCTGTCGATCCTACTGCCACAACCCTCGAGCCAGCCTGATCTGAG
* **
32915347 ACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTTCGTATGTGTAAGCCAACCCACAAA
196 ACTAGGAATGAACTCCGTATGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACAAA
* * * * *
32915412 ACGAGCGTACGGGCGCTCAGCCGGCTGAAGAGGAAGAATGCGTAAGCCGGGGATCGGTCCGATCC
261 ACGAGCGTACGGGCACTCAGCCGGCCGAAGAGGAAGAATGCGCAAGCCGGGGATCAGCCCGATCC
* * ** *
32915477 CCCCTGCGTTCTGTCGATCCTGCTACTGG
326 CCCCTACGTGCTACCGATCCCGCTACTGG
* *
32915506 TCCTACTGCCACAACGCTCGATCCGG
1 TCCTGCTGCCACAACCCTCGATCCGG
32915532 TCCAATCTTA
Statistics
Matches: 323, Mismatches: 48, Indels: 18
0.83 0.12 0.05
Matches are distributed among these distances:
353 1 0.00
354 202 0.63
355 116 0.36
356 4 0.01
ACGTcount: A:0.22, C:0.30, G:0.27, T:0.21
Consensus pattern (354 bp):
TCCTGCTGCCACAACCCTCGATCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGC
CAACCAATGAAAAGAGCGTACAGGCGCTCAGTCGATCGGAGAGGCGGAATGCGCAAGCCGAGGAT
TGGCCCGATCCCCCCTGCGTGCTGTCGATCCTACTGCCACAACCCTCGAGCCAGCCTGATCTGAG
ACTAGGAATGAACTCCGTATGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACAAA
ACGAGCGTACGGGCACTCAGCCGGCCGAAGAGGAAGAATGCGCAAGCCGGGGATCAGCCCGATCC
CCCCTACGTGCTACCGATCCCGCTACTGG
Found at i:32915234 original size:512 final size:520
Alignment explanation
Indices: 32913791--32915335 Score: 1363
Period size: 512 Copynumber: 3.0 Consensus size: 520
32913781 AACTCCGTAT
* * * *
32913791 GCTTAGACATGGAATGAACTCCGTATGTCTAAGCCAACCCACGAAAC-GAGCGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAG-GCGTACGGGTGCTCA
** * ** * * * **
32913855 GCCGACCGGAGAGGTAGAATGTGCAAGCCAAGGATCGGCTCGGCCCCCCCTACGTGCTGTCGATC
65 GCCGGTCGGAGAGGCAGAATGCACAAGCCGAGGATCAGCCCGATCCCCCCTACGTGCTGTCGATC
* * ** *
32913920 CTACTGCTGGTCCTACTGTCGCCACCCTCAGTCCGATCTGATCTTAGATTAGG-AATGAACTCTG
130 CTA---C-GG-----C---CGCAACCCTCGGTCCGATCCCATCTTAGACTAGGAAAT-AACTCTG
* * *
32913984 TATG-TGTAGACAT-GGAATGAACTCCGTATGCCTAAGC-CAACCCACGAAACGAACGTGCGA--
182 TATGCT-TAGAC-TGGGGATGAACTCCGTATGCCTAA-CTCAACCCACGAAACGAGCGTACGAGC
* * * * * * * * * *
32914044 G--AGCT-CA-GCCAGCCAGAGAGGTAGAATGCGCAAGCCGGGGATTAGCCCGGT-CCCC-CTGC
244 GCCAGCTGGAGGCCGGCCGGAGAGGCATAATACGCAAGCTGGGGATCAGCCCGATCCCCCTCTAC
* * * * * **
32914103 GTGCT---G-T--C-C-A----TCCTGCTACCGCAACCCTTGGTCCGATCT-GATCTTAGAC-TA
309 ATGCTACCGATCCCACTATCGGTCCTGCTACCACAACCCTCGATCCG-GCTGGGGCTTAGACAT-
* * * *
32914154 GGAATGAACTCCGTATGCCTAAGTCAACCCATGACACGAGCGTGCGGGTGCTGAGCCGGCCGGAC
372 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTGAGCCGGCCGGA-
* * * * ** * *
32914219 G-GGCATAATACGTAAGTCGAGGATCGACTCGATCCCTCTCTGCGTGCTACCGGTCCCGCTGCCA
436 GAGGCATAATGCGCAAGTCGAGGATCGACCCGATCCCCCTCTGCGTGCTGTCGATCCTGCTGCCA
* *
32914283 CAACCCTCAGTCCGGTTGGG
501 CAACCCTCGGTCCAGTTGGG
* * * *
32914303 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGTTCTTAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGCGTACGGGTGCTCAG
* * * * *
32914368 CCGGTCGGAGAGGTAGAATGCACAAGCCGGGGATCAGCTCGGTCCCCCTTACGTGCTGTCGATCC
66 CCGGTCGGAGAGGCAGAATGCACAAGCCGAGGATCAGCCCGATCCCCCCTACGTGCTGTCGATCC
* * * * * *
32914433 TGCGGTCGCAACCCTCGGTCTGGTCCCATCTTAGATTGGGAAATAACTCTGTATGCTTAGACTGG
131 TACGGCCGCAACCCTCGGTCCGATCCCATCTTAGACTAGGAAATAACTCTGTATGCTTAGACTGG
* * *
32914498 GGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTATGAGCGCTCAGCCGGCTAGGGA
196 GGATGAACTCCGTATGCCTAACTCAACCCACGAAACGAGCGTACGAGCGC-CA----GCT--GGA
* * *** **
32914563 GGCCGGCCGGAGAGGCTTAATATGCAAGCTGGGGATCAGTTTGATCCCCCTCTGTATGCTACCGA
254 GGCCGGCCGGAGAGGCATAATACGCAAGCTGGGGATCAGCCCGATCCCCCTCTACATGCTACCGA
* * * * *
32914628 TCCCATTGTTGGTCTTGCTACCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCC
319 TCCCACTATCGGTCCTGCTACCACAACCCTCGATCCGGCTGGGGCTTAGACATGGAATGAACTCC
* * *
32914693 GTATGCCTGAGCCAACCCACGAAATGAGCGTGTGGGCGCTGA-CCGGCCGGAGAGGCATAATGCG
384 GTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTGAGCCGGCCGGAGAGGCATAATGCG
* * * *
32914757 CAAG-CTAGGGACCGACCCGATCCCCCTCTGCGTACGGTCGATCCTGCTGCCACAACCCTCGGTC
449 CAAGTCGA-GGATCGACCCGATCCCCCTCTGCGTGCTGTCGATCCTGCTGCCACAACCCTCGGTC
32914821 CAGTTGGG
513 CAGTTGGG
* *
32914829 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAGGCGTATGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGCGTACGGGTGCTCAG
* * * * * ** **
32914894 TCGGTTGGAGAGGCGGAATGCGCTAGCCGAGGATTGGCCCGATCCCCCCTGTGTGCTG-CTGATC
66 CCGGTCGGAGAGGCAGAATGCACAAGCCGAGGATCAGCCCGATCCCCCCTACGTGCTGTC-GATC
** * * * *
32914958 CTATTGCCGCAACCCTCGG-CCGATCCGATCTTGGACTAGG-AATGAACTTTGTATGCTTAGATT
130 CTACGGCCGCAACCCTCGGTCCGATCCCATCTTAGACTAGGAAAT-AACTCTGTATGCTTAGACT
* * *
32915021 GGGGATGAACTCTGTATGCCTAACTCAACCCACGAAACGAGCGTACG-G-G-CA-CT-TA-GCCT
194 GGGGATGAACTCCGTATGCCTAACTCAACCCACGAAACGAGCGTACGAGCGCCAGCTGGAGGCCG
* *
32915080 GCCGGAGAGGCATAATGCGCAAG-TCGGGGATCAGCCCGATCCCCCTCTACGTGCTACCGATCCC
259 GCCGGAGAGGCATAATACGCAAGCT-GGGGATCAGCCCGATCCCCCTCTACATGCTACCGATCCC
* * *
32915144 GCTATCGGTCCTGCTGCCACAACCCTCGATCCGGCTGGGGCTTAGACATGGAATGAACTCTGTAT
323 ACTATCGGTCCTGCTACCACAACCCTCGATCCGGCTGGGGCTTAGACATGGAATGAACTCCGTAT
* * * * ** ***
32915209 GCCTAAGCCAACCAATGAAATGAGCGTGCAGGCGCTCAGTCGATCGGAGAGGTGGAATGCGCAAG
388 GCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTGAGCCGGCCGGAGAGGCATAATGCGCAAG
* * * * *
32915274 TCGAGGATTGGCCCGATCCCCC-CTGCGTGCTGTCGATCCTACTGTCACAACCCTCGATCCAG
453 TCGAGGATCGACCCGATCCCCCTCTGCGTGCTGTCGATCCTGCTGCCACAACCCTCGGTCCAG
32915336 CCTGATCTGA
Statistics
Matches: 842, Mismatches: 150, Indels: 82
0.78 0.14 0.08
Matches are distributed among these distances:
499 1 0.00
500 83 0.10
501 4 0.00
502 1 0.00
505 1 0.00
508 2 0.00
509 4 0.00
511 1 0.00
512 296 0.35
513 68 0.08
514 6 0.01
515 7 0.01
516 2 0.00
518 1 0.00
519 1 0.00
521 3 0.00
523 1 0.00
524 4 0.00
525 79 0.09
526 199 0.24
527 77 0.09
528 1 0.00
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (520 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGCGTACGGGTGCTCAG
CCGGTCGGAGAGGCAGAATGCACAAGCCGAGGATCAGCCCGATCCCCCCTACGTGCTGTCGATCC
TACGGCCGCAACCCTCGGTCCGATCCCATCTTAGACTAGGAAATAACTCTGTATGCTTAGACTGG
GGATGAACTCCGTATGCCTAACTCAACCCACGAAACGAGCGTACGAGCGCCAGCTGGAGGCCGGC
CGGAGAGGCATAATACGCAAGCTGGGGATCAGCCCGATCCCCCTCTACATGCTACCGATCCCACT
ATCGGTCCTGCTACCACAACCCTCGATCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCC
TAAGCCAACCCATGAAATGAGCGTGCGGGCGCTGAGCCGGCCGGAGAGGCATAATGCGCAAGTCG
AGGATCGACCCGATCCCCCTCTGCGTGCTGTCGATCCTGCTGCCACAACCCTCGGTCCAGTTGGG
Found at i:32915493 original size:184 final size:187
Alignment explanation
Indices: 32915183--32915677 Score: 518
Period size: 196 Copynumber: 2.6 Consensus size: 187
32915173 TCCGGCTGGG
* * * *
32915183 GCTTAGACATGGAATGAAC-TCTGTATGCCTAAGCCAACCAATGAAATGAGCGTGCAGGCGCTCA
1 GCTTAGACATGGAATGAACTTC-GTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * ** * * *
32915247 GTCGATCGGAGAGGTGGAATGCGCAAGTCGAGGATTGGCCCGATCCCCCCTGCGTGCTGTCGAT-
65 GCCG-T-GAAGAGGAAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATC
* *
32915311 C-CTACT-G-T-CACAACCCTCGATCCAG-CCTGATCTGAGACTGGGAATGAACTCCGTAT
128 CGCTACTGGCTCCACAACCCTCGATCCAGTCC-AATCTGAGACTGCGAATGAACTCCGTAT
** * *
32915367 GCTTAGACATGGAATGAACTTCGTATGTGTAAGCCAACCCACAAAACGAGCGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * *
32915432 CCGGCTGAAGAGGAAGAATGCGTAAGCCGGGGATCGGTCCGATCCCCCCTGCGTTCTGTCGATCC
66 CC-G-TGAAGAGGAAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCC
* * *
32915497 TGCTACTGGTCCTACTGCCACAACGCTCGATCCGGTCCAATCTTAGACTGCGAATGAACTCCGTA
129 -GCTACTGG-----CT-CCACAACCCTCGATCCAGTCCAATCTGAGACTGCGAATGAACTCCGTA
32915562 T
187 T
* * * *
32915563 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAATCGAGCGTGCGAGCGCTCAG
1 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * ** *
32915628 CCAGTCAGAGAGGCAGAATGCGCAAGCTAGGAATCGGCCCGATCCCCCCT
66 CC-GTGA-AGAGGAAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCT
32915678 ATGGCATGGA
Statistics
Matches: 255, Mismatches: 40, Indels: 20
0.81 0.13 0.06
Matches are distributed among these distances:
184 103 0.40
185 5 0.02
187 5 0.02
188 1 0.00
194 1 0.00
195 2 0.01
196 136 0.53
197 2 0.01
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (187 bp):
GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGTGAAGAGGAAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCCGC
TACTGGCTCCACAACCCTCGATCCAGTCCAATCTGAGACTGCGAATGAACTCCGTAT
Found at i:32915567 original size:26 final size:26
Alignment explanation
Indices: 32915538--32915590 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32915528 CCGGTCCAAT
*
32915538 CTTAGAC-TGCGAATGAACTCCGTATG
1 CTTAGACATG-GAATGAACTCCATATG
32915564 CTTAGACATGGAATGAACTCCATATG
1 CTTAGACATGGAATGAACTCCATATG
32915590 C
1 C
32915591 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:32915767 original size:112 final size:112
Alignment explanation
Indices: 32915570--32915787 Score: 293
Period size: 112 Copynumber: 1.9 Consensus size: 112
32915560 TATGCTTAGA
*
32915570 CATGGAATGAACTCCATATGCCTAAGCCAACCCACGAATCGAGCGTGCGAGCGCTCAGCCAGTCA
1 CATGGAATGAACTCCATATGCCTAAGCCAACCCACGAATCGACCGTGCGAGCGCTCAGCCAGTCA
* *
32915635 GAGAGGCAGAATGCGCAAGCT-AGGAATCGGCCCGATCCCCCCTATGG
66 GAGAGGCAGAATGCGCAAGCTGACG-ATCGACCCGATCCCCCCTATGG
* * *
32915682 CATGGAATGAACTCCATATGCCTATGCCAACCCACGAAAT-GACCGTGCGGGCGCTGAGCC-GAT
1 CATGGAATGAACTCCATATGCCTAAGCCAACCCACG-AATCGACCGTGCGAGCGCTCAGCCAG-T
*
32915745 C-GAAGAGGC-GTAATGCGTAAGCTGACGATCGACCCGATCCCCC
64 CAG-AGAGGCAG-AATGCGCAAGCTGACGATCGACCCGATCCCCC
32915788 TCTACGTGCT
Statistics
Matches: 94, Mismatches: 7, Indels: 10
0.85 0.06 0.09
Matches are distributed among these distances:
111 3 0.03
112 86 0.91
113 5 0.05
ACGTcount: A:0.27, C:0.31, G:0.27, T:0.15
Consensus pattern (112 bp):
CATGGAATGAACTCCATATGCCTAAGCCAACCCACGAATCGACCGTGCGAGCGCTCAGCCAGTCA
GAGAGGCAGAATGCGCAAGCTGACGATCGACCCGATCCCCCCTATGG
Found at i:32916214 original size:26 final size:26
Alignment explanation
Indices: 32916176--32916228 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32916166 TGGCTCAAAT
*
32916176 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
32916202 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
32916228 C
1 C
32916229 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:32917226 original size:26 final size:26
Alignment explanation
Indices: 32917197--32917248 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
32917187 CAGTCCGATT
32917197 TTAGAC-TGGGAATGAACTCCGTATGC
1 TTAGACAT-GGAATGAACTCCGTATGC
32917223 TTAGACATGGAATGAACTCCGTATGC
1 TTAGACATGGAATGAACTCCGTATGC
32917249 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
TTAGACATGGAATGAACTCCGTATGC
Found at i:32917631 original size:159 final size:158
Alignment explanation
Indices: 32917221--32917642 Score: 451
Period size: 159 Copynumber: 2.7 Consensus size: 158
32917211 AACTCCGTAT
* *
32917221 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATACGGGCGCTCAG
* * * *
32917286 CCAGCCGGAGAGGCAGAATGCGTAAGCCAGGGATCGGCCTGGTCCCCCCCTCCGTGCTCTCGGTC
66 CC-GTCGGAGAGGCAGAATGCGTAAGTCGGGGATCGGCCTGGTCCCCCCCTACGTGCTCTCGGTC
** * * * *
32917351 TTGCTACCGCAACCCCCGATCTGGTCTGA
130 CCGCTACCACAACCCCAGATCTCGACTGA
* * * * *
32917380 TCTTAGAC-TGGGAATGAACTCTGTATGCCTAA-CTCAACCCATGAAACGAGCGTATGGGCGCTG
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGC-CAACCCATGAAACGAGCATACGGGCGCTC
* * *
32917443 AGCCGTCCGGAGAGGCATAATACGTAAGTCGGGGATCGG-CTCGGTCCCCCTCTACGTGCTGC-C
64 AGCCGT-CGGAGAGGCAGAATGCGTAAGTCGGGGATCGGCCT-GGTCCCCCCCTACGTGCT-CTC
* * *
32917506 GGTCCCGTTGCCACAACCCTCAG-TC-CGACTGGG
126 GGTCCCGCTACCACAACCC-CAGATCTCGACT-GA
* * * *
32917539 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATCCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATACGGGCGCTCAG
* * *
32917604 CCGGTCAGAGAGGCAGAATGCGCAAGTCGGGGATTGGCC
66 CC-GTCGGAGAGGCAGAATGCGTAAGTCGGGGATCGGCC
32917643 CGATCTCCCC
Statistics
Matches: 215, Mismatches: 37, Indels: 21
0.79 0.14 0.08
Matches are distributed among these distances:
158 8 0.04
159 199 0.93
160 8 0.04
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATACGGGCGCTCAG
CCGTCGGAGAGGCAGAATGCGTAAGTCGGGGATCGGCCTGGTCCCCCCCTACGTGCTCTCGGTCC
CGCTACCACAACCCCAGATCTCGACTGA
Found at i:32917734 original size:26 final size:26
Alignment explanation
Indices: 32917699--32917749 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
32917689 CGGTATGATC
*
32917699 TTAGATTGGGAATGAACTCCATATGG
1 TTAGACTGGGAATGAACTCCATATGG
* *
32917725 TTAGACTGGGGATGAACTCCGTATG
1 TTAGACTGGGAATGAACTCCATATG
32917750 CCTAAGTCAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGG
Found at i:32918272 original size:670 final size:671
Alignment explanation
Indices: 32917221--32918438 Score: 1571
Period size: 670 Copynumber: 1.8 Consensus size: 671
32917211 AACTCCGTAT
**
32917221 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGCACTCAG
* * * * *
32917286 CCAGCCGGAGAGGCAGAATGCGTAAGCCAGGGATCGGCCTGGTCCCCCCCTCCGTGCTCTCGGTC
66 CCAGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCTAGT-CCACCCTCCGTGCTCTCGATC
* * ** *
32917351 TTGCTACCGCAACCCCCGATCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAACTCA
130 CTGCTACAGCAACCCCCGATCCAGTCTGATCTTAGACTAGGAATGAACTCTGTATGCCTAACTCA
* *
32917416 ACCCATGAAACGAGCGTATGGGCGCTGAGCCGTCCGGAGAGGCATAATACGTAAGTCGGGGATCG
195 ACCCATGAAACGAGCG-ATGGGCGCTGAGCCGTCCGAAGAGGCATAATACATAAGTCGGGGATCG
* * * *
32917481 GCTCGGTCCCCCTCTACGTGCTGCCGGTCCCGTTGCCACAACCCTCAGTCCGACTGGGGCTTAGA
259 GCCCGGACCCCCTCTACGTGCTACCGGTCCCGCTGCCACAACCCTCAGTCCGACTGGGGCTTAGA
* **
32917546 CATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATCCGGGCGCTCAACCGGTCA
324 CATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATACGGGCGCTCAACCGACCA
* * * * *
32917611 GAGAGGCAGAATGCGCAAGTCGGGGATTGGCCCGATCTCCCCTGCGTGCTGTCGATCCTGCTGTC
389 GAGAGGCAAAATGCGCAAGTCGAGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCCTGCTGCC
* * * * ** * *
32917676 GCAAGCCTCAGT-TCG-GTATGATCTTAGATTGGGAATGAACTCCATATGGTTAGACTGGGGATG
454 GCAACCCTCGGTCT-GAGT-CGATCTTAGACTACGAATGAACTCCATATGCTTACACTGGGGATG
32917739 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACAGGCACTCAGCTGGCCGGAGAGGCAT
517 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACAGGCACTCAGCTGGCCGGAGAGGCAT
32917804 AATGCACAAGCCAGGGATCAGCCCGGTCCCCCTCTTTGTGCTGTCGATCCCGCTGTCGGTCCTGC
582 AATGCACAAGCCAGGGATCAGCCCGGTCCCCCTCTTTGTGCTGTCGATCCCGCTGTCGGTCCTGC
32917869 TACCACAACCCTCGGTCTGGCTGGG
647 TACCACAACCCTCGGTCTGGCTGGG
* * * *
32917894 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCGTTCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGCACTCAG
* * * * * *
32917959 TC-GATCGGAGAGGCAGAATGCGCAAGCCAGGGATCGA-CTCAGT-CACCTTGCGTGCTGTTGAT
66 CCAG-CCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCT-AGTCCACCCTCCGTGCTCTCGAT
* ** * *
32918021 CCTGCTGTCAG-AACCTTCGGTCCAGTCTGATCTTAGACTAGGAATGAACT-TCGTATGCCTAAG
129 CCTGCT-ACAGCAACCCCCGATCCAGTCTGATCTTAGACTAGGAATGAACTCT-GTATGCCTAAC
* * * *
32918084 TCAACCC-TCGAAATGAGC-ATGCGAGCGCTGATCCGGT-CGAAGAGGCATAATGCATAAAG-CT
192 TCAACCCAT-GAAACGAGCGATG-G-GCGCTGAGCC-GTCCGAAGAGGCATAATACAT-AAGTCG
* ** * ** *
32918145 GGGATCGGCCCTGACCCCC-CTGTGTGCTACCGTTCCCGCTGCCACAACCCTTGGTCTGACTGGG
252 GGGATCGGCCCGGACCCCCTCTACGTGCTACCGGTCCCGCTGCCACAACCCTCAGTCCGACTGGG
*
32918209 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGA-ACGGGCGCTCA
317 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGC-ATACGGGCGCTCA
* * * * * * *
32918273 ACCGACCGGAGAGGTAAAATGCGTAAGTCGAGGATCGGCTCGGTCCCCCCTGTGTGCTGTTGATC
381 ACCGACCAGAGAGGCAAAATGCGCAAGTCGAGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATC
*
32918338 CTGCTGCCGCAACCCTCGGTCTGAGTCGATCTTAGACTACGAATGAACTCCGTATGCTTACACTG
446 CTGCTGCCGCAACCCTCGGTCTGAGTCGATCTTAGACTACGAATGAACTCCATATGCTTACACTG
* **
32918403 GGGATGAACTCTGTATTTCTAAGTCAACCCACGAAA
511 GGGATGAACTCCGTATGCCTAAGTCAACCCACGAAA
32918439 TGAGAATGCG
Statistics
Matches: 461, Mismatches: 72, Indels: 27
0.82 0.13 0.05
Matches are distributed among these distances:
669 3 0.01
670 235 0.51
671 121 0.26
672 10 0.02
673 92 0.20
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (671 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGCACTCAG
CCAGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCTAGTCCACCCTCCGTGCTCTCGATCC
TGCTACAGCAACCCCCGATCCAGTCTGATCTTAGACTAGGAATGAACTCTGTATGCCTAACTCAA
CCCATGAAACGAGCGATGGGCGCTGAGCCGTCCGAAGAGGCATAATACATAAGTCGGGGATCGGC
CCGGACCCCCTCTACGTGCTACCGGTCCCGCTGCCACAACCCTCAGTCCGACTGGGGCTTAGACA
TGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATACGGGCGCTCAACCGACCAGA
GAGGCAAAATGCGCAAGTCGAGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCCTGCTGCCGC
AACCCTCGGTCTGAGTCGATCTTAGACTACGAATGAACTCCATATGCTTACACTGGGGATGAACT
CCGTATGCCTAAGTCAACCCACGAAACGAGCGTACAGGCACTCAGCTGGCCGGAGAGGCATAATG
CACAAGCCAGGGATCAGCCCGGTCCCCCTCTTTGTGCTGTCGATCCCGCTGTCGGTCCTGCTACC
ACAACCCTCGGTCTGGCTGGG
Found at i:32918344 original size:158 final size:157
Alignment explanation
Indices: 32917863--32918394 Score: 457
Period size: 158 Copynumber: 3.4 Consensus size: 157
32917853 CCGCTGTCGG
* * *
32917863 TCCTGCTACCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGC
1 TCCTGCTGCCACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGC
* ** * ** * * *
32917928 CAACCCACGAAATGAGCGTTCGGGCACTCAGTCGATCGGAGAGGCAGAATGCGCAAGCCAGGGAT
66 CAACCCATGAAATGAGCGAACGGGCGCTCAACCGATCGGAGAGGCAAAATGCGTAAGCGA-GGAT
* * * *
32917993 CGACTCAGT-CACCTTGCGTGCTGTTGA
130 CGGCTCAGTCCCCCCTGTGTGCTGTTGA
* * * * * ** *
32918020 TCCTGCTGTCAGAACCTTCGGTCCAGTCT-GATCTTAGAC-TAGGAATGAACTTCGTATGCCTAA
1 TCCTGCTGCCACAACCCTCGGT-CTGACTGGGGCTTAGACAT-GGAATGAACTCCGTATGCCTAA
* * * * * * * * *
32918083 GTCAACCC-TCGAAATGAGC-ATGCGAGCGCTGATCCGGTCGAAGAGGCATAATGCATAAAGCTG
64 GCCAACCCAT-GAAATGAGCGA-ACGGGCGCTCAACCGATCGGAGAGGCAAAATGCGT-AAGC-G
* * * *** *
32918146 -GGATCGGCCCTGACCCCCCTGTGTGCTACCGT
125 AGGATCGGCTCAGTCCCCCCTGTGTGCTGTTGA
* * *
32918178 TCCCGCTGCCACAACCCTTGGTCTGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGC
1 TCCTGCTGCCACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGC
* * *
32918243 CAACCCATGAAATGGGCGAACGGGCGCTCAACCGACCGGAGAGGTAAAATGCGTAAGTCGAGGAT
66 CAACCCATGAAATGAGCGAACGGGCGCTCAACCGATCGGAGAGGCAAAATGCGTAAG-CGAGGAT
*
32918308 CGGCTCGGTCCCCCCTGTGTGCTGTTGA
130 CGGCTCAGTCCCCCCTGTGTGCTGTTGA
* * * ** *
32918336 TCCTGCTGCCGCAACCCTCGGTCTGAGTCGATCTTAGAC-TACGAATGAACTCCGTATGC
1 TCCTGCTGCCACAACCCTCGGTCTGACTGGGGCTTAGACAT-GGAATGAACTCCGTATGC
32918395 TTACACTGGG
Statistics
Matches: 286, Mismatches: 75, Indels: 27
0.74 0.19 0.07
Matches are distributed among these distances:
156 1 0.00
157 104 0.36
158 178 0.62
159 3 0.01
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.22
Consensus pattern (157 bp):
TCCTGCTGCCACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGC
CAACCCATGAAATGAGCGAACGGGCGCTCAACCGATCGGAGAGGCAAAATGCGTAAGCGAGGATC
GGCTCAGTCCCCCCTGTGTGCTGTTGA
Found at i:32919130 original size:26 final size:26
Alignment explanation
Indices: 32919090--32919143 Score: 92
Period size: 26 Copynumber: 2.1 Consensus size: 26
32919080 GGCTCAAAAT
32919090 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
32919116 CTTAGACATGG-AATGAACTCCGTATG
1 CTTAGAC-TGGAAATGAACTCCGTATG
32919142 CT
1 CT
32919144 CAAGCCAACC
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.89
27 3 0.11
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:32919543 original size:159 final size:157
Alignment explanation
Indices: 32919115--32919544 Score: 413
Period size: 159 Copynumber: 2.7 Consensus size: 157
32919105 AACTCCGTAT
*
32919115 GCTTAGACATGGAATGAACTCCGTATG-CTCAAGCCAACCCATGAAACGAGCATGCGGGCG-TTC
1 GCTTAGACATGGAATGAACTCCGTATGCCT-AAGCCAACCCATGAAACGAGCGTGCGGGCGCTT-
* * *** * *
32919178 AG-TCGGCTGGAGAGGCAGAATGCGTAAGCCGGGGATCGACCCGGTCCCCCTTGTGTGTTGTCAA
64 AGCT-GGC-CGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTTACATGCTGCCAA
* *
32919242 TCCTGCTGCCATAACCCTCGGTCTGTTCTGA
127 TCCTGCTGCCACAACCCTCGGTCTGTACTGA
* * * * * * * * **
32919273 TCTTACAC-TGGGAATAAACTCTGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCACCGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTTA
* * * * * * * **
32919337 GCCGGTCGAAGAGGCATAATGCACAAGCCAGGGAT-TAGCTCGGTCCCCCTCTACATGCTGCCGG
65 GCTGGCCG-AGAGGCAGAATGCGCAAGCCGGGGATCGA-CCCGGTCCCCCT-TACATGCTGCCAA
*
32919401 TCCTGCTGCCACAACCCTCGGTCTG-ACTGGG
127 TCCTGCTGCCACAACCCTCGGTCTGTACT-GA
* * * *
32919432 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGCGCGTGCCGGCGCTTAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTTAG
*
32919497 CTGGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCC
66 CTGGCC-GAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCC
32919545 CTGCGTGCTG
Statistics
Matches: 209, Mismatches: 52, Indels: 21
0.74 0.18 0.07
Matches are distributed among these distances:
157 3 0.01
158 86 0.41
159 117 0.56
160 3 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTTAG
CTGGCCGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTTACATGCTGCCAATCCT
GCTGCCACAACCCTCGGTCTGTACTGA
Found at i:32919627 original size:26 final size:26
Alignment explanation
Indices: 32919591--32919643 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
32919581 CCGGTCCGAT
32919591 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
32919617 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
32919643 C
1 C
32919644 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:32920056 original size:158 final size:159
Alignment explanation
Indices: 32919758--32920094 Score: 412
Period size: 158 Copynumber: 2.1 Consensus size: 159
32919748 GCTGCCAGTA
* * *
32919758 CTGCTGCCACAACCCTCAGT-TCAGCTGGGGCTCAGACTTGAAATGAACTCCGTATGCCTAAGCC
1 CTGCTGCCACAACCCTCGGTCTCAGCTGGGGCTCAGACATGAAATGAACTCCCTATGCCTAAGCC
* * * * * * *
32919822 AACCCACGAAATGAGTGTGTGGGCATTGAGCCAGCTGGAGAGGCATAATACGCAAGTCGGGGATT
66 AACCAACGAAACGAGTGTGCGGGCACTCAGCCAGCTGGAGAGGCAAAATACGCAAGTCGGGGATC
* * *
32919887 GGCCCGGTCCCCCTCTGCATG-TGTCGGTC
131 GACCCGATCCCCCT-TGCATGCTGTCGATC
* * *
32919916 CTGCTGCCACAACCCTCGGTCTGA-CTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCC
1 CTGCTGCCACAACCCTCGGTCTCAGCTGGGGCTCAGACATGAAATGAACTCCCTATGCCTAAGCC
* * * * *
32919980 AACCAATGAAACGGGTGTGCGGGCGCTCAGCC-GGTCGGAGAGGCAAAATGCGCAAGTCGGGGAT
66 AACCAACGAAACGAGTGTGCGGGCACTCAGCCAGCT-GGAGAGGCAAAATACGCAAGTCGGGGAT
*
32920044 CGACCCGATCCCCCTTGCGTGCTGTCGATC
130 CGACCCGATCCCCCTTGCATGCTGTCGATC
* *
32920074 CTACTGCCATAACCCTCGGTC
1 CTGCTGCCACAACCCTCGGTC
32920095 CGGTCTGATC
Statistics
Matches: 152, Mismatches: 24, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
157 7 0.05
158 143 0.94
159 2 0.01
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (159 bp):
CTGCTGCCACAACCCTCGGTCTCAGCTGGGGCTCAGACATGAAATGAACTCCCTATGCCTAAGCC
AACCAACGAAACGAGTGTGCGGGCACTCAGCCAGCTGGAGAGGCAAAATACGCAAGTCGGGGATC
GACCCGATCCCCCTTGCATGCTGTCGATC
Found at i:32920864 original size:26 final size:26
Alignment explanation
Indices: 32920826--32920878 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32920816 GGCTCAAAAT
*
32920826 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
32920852 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
32920878 C
1 C
32920879 CTAAGCCAAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:32921795 original size:159 final size:157
Alignment explanation
Indices: 32921501--32921804 Score: 432
Period size: 159 Copynumber: 1.9 Consensus size: 157
32921491 GATCCTGCCA
* * *
32921501 CCACAACCCTTGGTCCGGCTGGGGCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCAC
1 CCACAACCCTCGATCCGGCTGGGGCTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCCAC
* * * * *
32921566 GAAATGAGCGTGCGGATGCTGAGTCAGCCGGAGAGGCATAATGCGCAAGCTGGGGATCAACCCAT
66 GAAATGAGCGTGCGGATGCTCAGTCAGCCGAAGAGGCAGAATACGCAAGCTGAGGATCAACCCA-
32921631 TCCCCCTCTGCGTGCTGCCTGTCCCACTG
130 TCCCCC-CTGCGTGCTGCCTGTCCCACTG
*
32921660 CCACAACCCTCGATCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
1 CCACAACCCTCGATCCGGCTGGGGCTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCCAC
* * * * *
32921725 GAAATGGGCGTGCGGGTGCTCAG-CTGGCCGAAGAGGCAGAATACGCAAGC-GAGGATCAGCTCG
66 GAAATGAGCGTGCGGATGCTCAGTC-AGCCGAAGAGGCAGAATACGCAAGCTGAGGATCAAC-CC
32921788 ATCCCCCCTGCGTGCTG
129 ATCCCCCCTGCGTGCTG
32921805 TCGATCCTGC
Statistics
Matches: 129, Mismatches: 14, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
157 10 0.08
158 15 0.12
159 104 0.81
ACGTcount: A:0.23, C:0.32, G:0.28, T:0.17
Consensus pattern (157 bp):
CCACAACCCTCGATCCGGCTGGGGCTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCCAC
GAAATGAGCGTGCGGATGCTCAGTCAGCCGAAGAGGCAGAATACGCAAGCTGAGGATCAACCCAT
CCCCCCTGCGTGCTGCCTGTCCCACTG
Found at i:32930208 original size:26 final size:26
Alignment explanation
Indices: 32930179--32930231 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
32930169 CTGGTCTGAT
*
32930179 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCTGCATG
* **
32930205 CTTATACTAGGGCTGAACTCTGCATG
1 CTTAGACTAGGAATGAACTCTGCATG
32930231 C
1 C
32930232 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCTGCATG
Found at i:32930659 original size:159 final size:159
Alignment explanation
Indices: 32930370--32930664 Score: 378
Period size: 159 Copynumber: 1.9 Consensus size: 159
32930360 CTCCTACTGC
* * * *
32930370 CACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATG
1 CACAACCCTCGATCCGACTGGGGCTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCCATG
* * * * * * * *
32930435 AAATGAGCGTATGGGCACTGAGCTAACCGAAGAGGTATAATGCACAAGCCGAGGATCGACTCGGT
66 AAACGAGCGTATGGGCACTAACCGAACAGAAGAGGCAGAATGCACAAGCCGAGGATCGACCCGGT
32930500 CCCCCTCCACGTGTTACCGGTCTCGCTGG
131 CCCCCTCCACGTGTTACCGGTCTCGCTGG
32930529 CACAACCCTCGATCCGACTGGGGCTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCCATG
1 CACAACCCTCGATCCGACTGGGGCTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCCATG
* * ** * ***
32930594 AAACGGGCGTGTGGGTGCTCAACCGATCAG-AGAGGCAGAATGTGTAAGCCGAGGATC-ACCCCG
66 AAACGAGCGTATGGGCACT-AACCGAACAGAAGAGGCAGAATGCACAAGCCGAGGATCGA-CCCG
32930657 GTCCCCCT
129 GTCCCCCT
32930665 ACGTGCTGTT
Statistics
Matches: 114, Mismatches: 20, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
158 1 0.01
159 108 0.95
160 5 0.04
ACGTcount: A:0.26, C:0.30, G:0.26, T:0.18
Consensus pattern (159 bp):
CACAACCCTCGATCCGACTGGGGCTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCCATG
AAACGAGCGTATGGGCACTAACCGAACAGAAGAGGCAGAATGCACAAGCCGAGGATCGACCCGGT
CCCCCTCCACGTGTTACCGGTCTCGCTGG
Found at i:32931106 original size:26 final size:26
Alignment explanation
Indices: 32931077--32931129 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32931067 CTAGTCTGAT
32931077 CTTAGACTGGGAATGAACT-CTGTATG
1 CTTAGACTGGGAATGAACTAC-GTATG
*
32931103 CTTAGACTGGGGATGAACTACGTATG
1 CTTAGACTGGGAATGAACTACGTATG
32931129 C
1 C
32931130 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:32931121 original size:184 final size:184
Alignment explanation
Indices: 32930931--32931386 Score: 664
Period size: 184 Copynumber: 2.5 Consensus size: 184
32930921 TAGACATGCA
* * * *
32930931 ATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTTCGGGTGCTCAGTCGACCGGAGAGG
1 ATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATTCGGGCGCTCAGTCGAACGGAGAGG
* * *
32930996 CAGAATGCGCAAGCAGGGGATCGGCTCGATCCCCCCTGCGTGCTGTTGATCCTGCTACCACAACC
66 CAGAATGCGCAAGCAGGGGATCGGCCCGATCACCCCTGCGTGCTGTCGATCCTGCTACCACAACC
* *
32931061 CTCGGTCTAGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGG
131 CTCGGTCTAGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAAACTGGGG
* * * * **
32931115 ATGAACTACGTATGCCTAAGTCAACCCATGAAATGAGCATGCGGGCGCTCAGCCGGTCGGAGAGG
1 ATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATTCGGGCGCTCAGTCGAACGGAGAGG
* * *
32931180 CAGAATGCGCAAGCCA-GGGATCGGCCCGGTCACCTCTGCGTGCTGTCGATCCTGCTACCGCAAC
66 CAGAATGCGCAAG-CAGGGGATCGGCCCGATCACCCCTGCGTGCTGTCGATCCTGCTACCACAAC
*
32931244 CCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAAACTGGGG
130 CCTCGGTCTAGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAAACTGGGG
* **
32931299 ATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGT-GGGCGCTCAGTCAAACAAAGAG
1 ATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCAT-TCGGGCGCTCAGTCGAACGGAGAG
* *
32931363 GCAGGATGCGCAAGCTGGGGATCG
65 GCAGAATGCGCAAGCAGGGGATCG
32931387 AACGGATAGT
Statistics
Matches: 240, Mismatches: 29, Indels: 6
0.87 0.11 0.02
Matches are distributed among these distances:
183 1 0.00
184 237 0.99
185 2 0.01
ACGTcount: A:0.24, C:0.27, G:0.29, T:0.20
Consensus pattern (184 bp):
ATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATTCGGGCGCTCAGTCGAACGGAGAGG
CAGAATGCGCAAGCAGGGGATCGGCCCGATCACCCCTGCGTGCTGTCGATCCTGCTACCACAACC
CTCGGTCTAGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAAACTGGGG
Found at i:32931290 original size:26 final size:26
Alignment explanation
Indices: 32931261--32931313 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
32931251 CTGGTCCGAT
* *
32931261 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
*
32931287 CTTAAACTGGGGATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
32931313 C
1 C
32931314 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:32931994 original size:26 final size:26
Alignment explanation
Indices: 32931943--32931995 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
32931933 GGCTCAAAAT
*
32931943 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
*
32931969 CTTAGACGT-GGAATGAACTTCATATG
1 CTTAGAC-TAGGAATGAACTCCATATG
32931995 C
1 C
32931996 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:32932479 original size:26 final size:26
Alignment explanation
Indices: 32932443--32932493 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
32932433 TTGGTCCAAT
* *
32932443 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATAAACTCTGTATG
*
32932469 CTTAGACTGGGGATAAACTCTGTAT
1 CTTAGACTGGGAATAAACTCTGTAT
32932494 TCCTCAGTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.14, G:0.25, T:0.33
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCTGTATG
Found at i:32932903 original size:159 final size:159
Alignment explanation
Indices: 32932614--32932917 Score: 369
Period size: 159 Copynumber: 1.9 Consensus size: 159
32932604 CAGATCTCGC
* * * * * **
32932614 TGTCGGTCCTGCTGCCACAACCCTCTGTTCGGCTAGGGCTTTGGCATGGAATGAACTCTGTATGC
1 TGTCGGTCCCGCTACCACAACCCTCTGTCCGGCTAGGGCTTAGACATGGAATGAACTCCCTATGC
* * * * * * *
32932679 CTAAGCCAACCGACGAAACGAGCGTGCGGGCACTGAGTCAGCCGGAGAGGCATAATGCATAAGTC
66 CTAAGCCAACCAACGAAACGAGCGTGCGGGCACTCAGACAGCCGAAAAGGCAGAATGCACAAGTC
* *
32932744 GGGGGTCGGCCTGGTCCCTCTTTGTGTGT
131 GAGGATCGGCCTGGTCCCTCTTTGTGTGT
* *
32932773 TGTCGGTCCCGCTACCACAACCCT-TGGTCCGGTTGGGGCTTAGACATGGAATGAACTCCCTATG
1 TGTCGGTCCCGCTACCACAACCCTCT-GTCCGGCTAGGGCTTAGACATGGAATGAACTCCCTATG
* * ** *
32932837 CCTAAGCCAACCAATGAAACGGGCGTGCGGGTGCTCA-ACAGACCGAAAAGGCAGAATGCGCAAG
65 CCTAAGCCAACCAACGAAACGAGCGTGCGGGCACTCAGACAG-CCGAAAAGGCAGAATGCACAAG
32932901 TCGAGGATCGGCCTGGT
129 TCGAGGATCGGCCTGGT
32932918 TCCCCCTGCG
Statistics
Matches: 120, Mismatches: 23, Indels: 4
0.82 0.16 0.03
Matches are distributed among these distances:
158 4 0.03
159 116 0.97
ACGTcount: A:0.22, C:0.27, G:0.31, T:0.21
Consensus pattern (159 bp):
TGTCGGTCCCGCTACCACAACCCTCTGTCCGGCTAGGGCTTAGACATGGAATGAACTCCCTATGC
CTAAGCCAACCAACGAAACGAGCGTGCGGGCACTCAGACAGCCGAAAAGGCAGAATGCACAAGTC
GAGGATCGGCCTGGTCCCTCTTTGTGTGT
Found at i:32932998 original size:26 final size:26
Alignment explanation
Indices: 32932969--32933047 Score: 122
Period size: 26 Copynumber: 3.0 Consensus size: 26
32932959 GCGGTCCGAT
* *
32932969 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
*
32932995 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGGATGAACTCCGTATG
*
32933021 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
32933047 C
1 C
32933048 CTAAGTCAAC
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCGTATG
Found at i:32933374 original size:26 final size:26
Alignment explanation
Indices: 32933345--32933397 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32933335 CCGGTCTGAT
32933345 CTTAGACT-GGAAATGAACTCCGTATG
1 CTTAGACTAGG-AATGAACTCCGTATG
*
32933371 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
32933397 C
1 C
32933398 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:32934379 original size:159 final size:159
Alignment explanation
Indices: 32934185--32934543 Score: 386
Period size: 159 Copynumber: 2.3 Consensus size: 159
32934175 GAATCGACTT
* * *
32934185 GATCACCCC-CTACGTGCTGTCGATCCTGCTACCACAACCCTCAGTTCGGTCT-GATCCTACAC-
1 GATC-CCCCTCTACGTGCTGCCGATCCCGCTACCACAACCCTCAGTTCGGT-TGGAGCCTACACA
* * ** * * ** * *
32934247 TGGGAATGAAC-TCTGTATGCATAAGTCAACCCATAAAACGAGTGTGTGGGCACTGAGCAGGTC-
64 T-GGAATGAACTTC-GTATGCACAAGCCAACAAACAAAACGAGCGTCCGAGCACTGAGCAGGCCA
32934310 GAAGAGGAATAATGTACAAGCCGGGGATCAACCC
127 GAA-AGGAATAATGTACAAGCCGGGGATCAACCC
* * * * * *
32934344 GATCCCCCTCTATGTGCTGCCGATCCCGCTACCACAACCCTCGGTTTGGTTGGGGCTTAGACATG
1 GATCCCCCTCTACGTGCTGCCGATCCCGCTACCACAACCCTCAGTTCGGTTGGAGCCTACACATG
* * *
32934409 GAATGAACTTCGTATGCCCAAGCCAACAAACGAAACGAGCGTCCGAGCACTGAGCCGGCCAGAAA
66 GAATGAACTTCGTATGCACAAGCCAACAAACAAAACGAGCGTCCGAGCACTGAGCAGGCCAGAAA
* * * **
32934474 GGCATAATGTGCAAGTCGGGGATCGGCCC
131 GGAATAATGTACAAGCCGGGGATCAACCC
*
32934503 GATCCCCCTCTACGTGCTGCCGATCCCGCTGCCACAACCCT
1 GATCCCCCTCTACGTGCTGCCGATCCCGCTACCACAACCCT
32934544 TGATTCAGCT
Statistics
Matches: 166, Mismatches: 29, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
158 5 0.03
159 155 0.93
160 6 0.04
ACGTcount: A:0.25, C:0.31, G:0.25, T:0.19
Consensus pattern (159 bp):
GATCCCCCTCTACGTGCTGCCGATCCCGCTACCACAACCCTCAGTTCGGTTGGAGCCTACACATG
GAATGAACTTCGTATGCACAAGCCAACAAACAAAACGAGCGTCCGAGCACTGAGCAGGCCAGAAA
GGAATAATGTACAAGCCGGGGATCAACCC
Found at i:32934624 original size:159 final size:158
Alignment explanation
Indices: 32934318--32934679 Score: 422
Period size: 159 Copynumber: 2.3 Consensus size: 158
32934308 TCGAAGAGGA
* *
32934318 ATAATGTACAAGCCGGGGATCAACCCGATCCCCCTCTATGTGCTGCCGATCCCGCTACCACAACC
1 ATAATGTACAAGCCGGGGATCGACCCGATCCCCCTCTACGTGCTGCCGATCCCGCTACCACAACC
* ** * * * *
32934383 CTCGGTTTGGTTGGGGCTTAGACATGGAATGAACTTCGTATGCCCAAGCCAACAAACGAAACGAG
66 CTCGATTCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCCAAACCAACAAACGAAACGAG
*
32934448 CGTCCGAGCACTGAGCCGGCCAGAAAGGC
131 CGTCCGAGCAC-GAGCCGACCAGAAAGGC
* * * *
32934477 ATAATGTGCAAGTCGGGGATCGGCCCGATCCCCCTCTACGTGCTGCCGATCCCGCTGCCACAACC
1 ATAATGTACAAGCCGGGGATCGACCCGATCCCCCTCTACGTGCTGCCGATCCCGCTACCACAACC
* * ** * *
32934542 CTTGATTCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAACCAACCCACGAAATGGG
66 CTCGATTCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCCAAACCAACAAACGAAACGAG
* * * *
32934607 CGTACGGGTGCAC-AGCCGACCGGAGAGGC
131 CGT-C-CGAGCACGAGCCGACCAGAAAGGC
* * * * *
32934636 AGAATGCACAAGCCGAGGATCGACTCGATCCCCC-CTGCGTGCTG
1 ATAATGTACAAGCCGGGGATCGACCCGATCCCCCTCTACGTGCTG
32934680 TCGTAACCCT
Statistics
Matches: 169, Mismatches: 32, Indels: 5
0.82 0.16 0.02
Matches are distributed among these distances:
158 9 0.05
159 154 0.91
160 1 0.01
161 5 0.03
ACGTcount: A:0.25, C:0.32, G:0.26, T:0.17
Consensus pattern (158 bp):
ATAATGTACAAGCCGGGGATCGACCCGATCCCCCTCTACGTGCTGCCGATCCCGCTACCACAACC
CTCGATTCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCCAAACCAACAAACGAAACGAG
CGTCCGAGCACGAGCCGACCAGAAAGGC
Found at i:32934755 original size:26 final size:26
Alignment explanation
Indices: 32934704--32934756 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
32934694 CTGGTCTGAT
*
32934704 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
32934730 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
32934756 C
1 C
32934757 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:32935784 original size:145 final size:146
Alignment explanation
Indices: 32935492--32935769 Score: 416
Period size: 145 Copynumber: 1.9 Consensus size: 146
32935482 CGTATGCCGG
* *
32935492 AGACATAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGTGTGCTGTCGCAACCCTCGGTC
1 AGACATAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGCAACCCTCAGTC
* * * * * *
32935557 CGGTCTGATCTTACATAGGGAATGAACTTCGTATGCATAAGTCAACCCAAGAAATGAGCGTACGG
66 CGGTCTAAACTTACATAGGAAATGAACTCCGTATGCATAAGTCAACCCAAGAAACGAGCATACGG
*
32935622 GTGCTCAGCCAGTCGA
131 GCGCTCAGCCAGTCGA
*
32935638 AGACATAGAATGCGCAAGCCGGGGATCGACCCGGT-CCCCCTGCGTGCTGTCGTAACCCTCAGTC
1 AGACATAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGCAACCCTCAGTC
* * *
32935702 TGGTCTAAACTTACACT-GGAAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCATGCG
66 CGGTCTAAACTTACA-TAGGAAATGAACTCCGTATGCATAAGTCAACCCAAGAAACGAGCATACG
32935766 GGCG
130 GGCG
32935770 TAGAGCTGGT
Statistics
Matches: 118, Mismatches: 13, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
145 82 0.69
146 36 0.31
ACGTcount: A:0.26, C:0.28, G:0.27, T:0.19
Consensus pattern (146 bp):
AGACATAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGCAACCCTCAGTC
CGGTCTAAACTTACATAGGAAATGAACTCCGTATGCATAAGTCAACCCAAGAAACGAGCATACGG
GCGCTCAGCCAGTCGA
Found at i:32936693 original size:26 final size:26
Alignment explanation
Indices: 32936652--32936704 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
32936642 CTGGTCCAAT
* *
32936652 CTTAGACTTGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
32936678 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
32936704 C
1 C
32936705 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:32936744 original size:197 final size:197
Alignment explanation
Indices: 32936377--32936745 Score: 515
Period size: 197 Copynumber: 1.9 Consensus size: 197
32936367 AGAGAGGTAG
* * * * *
32936377 AATGCGCAAGTCAGGGATCGACCCGGTCCCCCCTACGTGCTGTCGATCCTGCTGCCGCAACCCCC
1 AATGCGCAAGCCAGGGATCGACCCGATCCCCCCTACATGCTGTCGATCCTACTACCGCAACCCCC
* **
32936442 AGTCTAATCCGATCTTAGACTGGGAATTTACTCTGTATGCTTAGACAGGGGATGAACTCCGTATG
66 AGTCTAATCCAATCTTAGACTGGGAATGAACTCTGTATGCTTAGACAGGGGATGAACTCCGTATG
* * **
32936507 CCTAAGTCAACCCACGAAACGAGCGTATGGGCGTTCAGCCGATCGGAGAGGCCAGCCAAAGAGGC
131 CCTAAGTCAACCCACGAAACGAGCATACGGGCACTCAGCCGATCGGAGAGGCCAGCCAAAGAGGC
32936572 AT
196 AT
* * * *
32936574 AATGCGCAAGCCGGGGATCGACCCGATCCCCCTTGCATGCTGTCGATCCTACTACCGCAACCCTC
1 AATGCGCAAGCCAGGGATCGACCCGATCCCCCCTACATGCTGTCGATCCTACTACCGCAACCCCC
* ** * *
32936639 GGTCTGGTCCAATCTTAGACTTGGAATGAACT-TCGTATGCTTAGACTGGGGATGAACTCCGTAT
66 AGTCTAATCCAATCTTAGACTGGGAATGAACTCT-GTATGCTTAGACAGGGGATGAACTCCGTAT
* *
32936703 GCCTAAGTCAACCCATGAAACGAGCATGCGGGCACTCAGCCGA
130 GCCTAAGTCAACCCACGAAACGAGCATACGGGCACTCAGCCGA
32936746 CTAGAGAGGC
Statistics
Matches: 148, Mismatches: 23, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
196 1 0.01
197 147 0.99
ACGTcount: A:0.24, C:0.30, G:0.25, T:0.21
Consensus pattern (197 bp):
AATGCGCAAGCCAGGGATCGACCCGATCCCCCCTACATGCTGTCGATCCTACTACCGCAACCCCC
AGTCTAATCCAATCTTAGACTGGGAATGAACTCTGTATGCTTAGACAGGGGATGAACTCCGTATG
CCTAAGTCAACCCACGAAACGAGCATACGGGCACTCAGCCGATCGGAGAGGCCAGCCAAAGAGGC
AT
Found at i:32937300 original size:11 final size:11
Alignment explanation
Indices: 32937284--32937316 Score: 66
Period size: 11 Copynumber: 3.0 Consensus size: 11
32937274 CGGTTAGGCT
32937284 CTCCGACGATG
1 CTCCGACGATG
32937295 CTCCGACGATG
1 CTCCGACGATG
32937306 CTCCGACGATG
1 CTCCGACGATG
32937317 GTGCCCTGGG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.18, C:0.36, G:0.27, T:0.18
Consensus pattern (11 bp):
CTCCGACGATG
Found at i:32937425 original size:26 final size:26
Alignment explanation
Indices: 32937386--32937438 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
32937376 GGCTCAAAAT
32937386 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
32937412 CTTAGACATG-GAATGAACTCCGTATG
1 CTTAGAC-TGAGAATGAACTCCGTATG
32937438 C
1 C
32937439 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:32937963 original size:158 final size:157
Alignment explanation
Indices: 32937412--32937985 Score: 540
Period size: 157 Copynumber: 3.6 Consensus size: 157
32937402 ACTCCGTATG
* * * *
32937412 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGCACCCAGT
1 CTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGC
* * * * *
32937477 CGGTCGGAGAGGCAAAATGTGCAAGCCGGGGATCGACCCAGTCCCCCCTTGCGTGCTGTCAATCC
65 CGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCAGT-CCCCCTTGCGTGCTGTCGATCC
* * * **
32937542 TGCTGCCACAACCCTTGATTTGGTCTGAT
129 TACTGCCGCAACCCTTGGTCCGGTCTGAT
* * ** * * *
32937571 CTTACG-CTGGGAATGAACTTCGTATGCATAAGTTAACCCACGAAACGAGCGTGTGGGCGCTGAG
1 CTTA-GACT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * * * * ** * *
32937635 CCGGCTGAAGAGGCATAATGCGCAAGCTGGGGAACGGCCTGGTCCCCCCTACGTGCTGTCGATCC
64 CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCAGTCCCCCTTGCGTGCTGTCGATCC
** **
32937700 TACTGCCGCAACCCTCAGTCCGG-CTGGG
129 TACTGCCGCAACCCTTGGTCCGGTCTGAT
* * * * * * *
32937728 GTTAGAAATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCACTCATC
1 CTTAG-ACTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGC
* * *
32937793 CGGCTGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCAGTCCCCCTTGCATGCTGTCGATCCT
65 CGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCAGTCCCCCTTGCGTGCTGTCGATCCT
* * * **
32937858 ACTGTCGCATCGCTTGGTCCGGTCCAAT
130 ACTGCCGCAACCCTTGGTCCGGTCTGAT
* * * * *
32937886 CTTAGACTGGCAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGTGTGCGGGCGCTCAGC
1 CTTAGACTGG-AATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGC
* * * * * *
32937951 AGACCAGAGAGGCAGGATGTGCAAGCCGAGGATCG
65 CGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCG
32937986 AATGGGTGGT
Statistics
Matches: 325, Mismatches: 84, Indels: 13
0.77 0.20 0.03
Matches are distributed among these distances:
156 1 0.00
157 126 0.39
158 115 0.35
159 82 0.25
160 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.29, T:0.19
Consensus pattern (157 bp):
CTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCC
GGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCAGTCCCCCTTGCGTGCTGTCGATCCTA
CTGCCGCAACCCTTGGTCCGGTCTGAT
Found at i:32938950 original size:159 final size:158
Alignment explanation
Indices: 32938607--32938981 Score: 416
Period size: 158 Copynumber: 2.4 Consensus size: 158
32938597 AACTTCATAT
* * *
32938607 GCTT-GACATGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGTGTGCAGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGCGTGCAGGCGCTAAG
* * * *
32938671 CCGATCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCAATTCCCCCTGTGTGCTGTCAATCT
66 CCGATCGAAGAGGCAGAATGCGCAAGCCAGGGATAGACCCAATTCCCCCTCTGTGCTGCCAATCT
* * * * *
32938736 TGTTATCGCAACCCTCAGTCCAGTTCGA
131 CGCTACCCCAACCCTCAGTCCAGCTCGA
** * * * * * *
32938764 TATTACAC-TGGGAATGAACTCCATATGCATAAGTCAACCCACGAAATGAGCGTGCGGGCGCTAA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGCGTGCAGGCGCTAA
* * * *
32938828 GCCGATCGAAGAGGCATAATGTGCAAGCCGGGGATTAG-CCCGA-TCCCCCTCTGCATGCTGCCA
65 GCCGATCGAAGAGGCAGAATGCGCAAGCCAGGGA-TAGACCCAATTCCCCCTCTG--TGCTGCCA
* * * *
32938891 ATCTCGCTGCCCCGACCCTCAGTCCAGCTGGG
127 ATCTCGCTACCCCAACCCTCAGTCCAGCTCGA
* *
32938923 GCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACAAAACGGGCGTGCAGGC
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGCGTGCAGGC
32938982 ACTCAGCTGG
Statistics
Matches: 174, Mismatches: 38, Indels: 10
0.78 0.17 0.05
Matches are distributed among these distances:
157 12 0.07
158 82 0.47
159 79 0.45
160 1 0.01
ACGTcount: A:0.26, C:0.30, G:0.25, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGCGTGCAGGCGCTAAG
CCGATCGAAGAGGCAGAATGCGCAAGCCAGGGATAGACCCAATTCCCCCTCTGTGCTGCCAATCT
CGCTACCCCAACCCTCAGTCCAGCTCGA
Found at i:32940896 original size:159 final size:159
Alignment explanation
Indices: 32940733--32941060 Score: 361
Period size: 159 Copynumber: 2.1 Consensus size: 159
32940723 TAATGCACAG
* * * * *** * **
32940733 GCCGGGGATCAGCTCAATCCCCCTCTGCATGCTGCCAGTCCCGCTGCCACAACCGTTGGTTTGGC
1 GCCGGGGATCAGCCCAATCCCCCACTGCATGCTACCAGTCCCGCTACCACAACCCCCGATCCGGC
*
32940798 TGGGGCTTAGACATGGAATGAA-CTCACTATGCCTAAGCCAACCCATGAAACAGGCGTGCAGGCA
66 TGGGGCTTAGACATGGAATGAACCT-ACTATGCCTAAGCCAACCCATGAAACAGGCGTACAGGCA
*
32940862 CTCAGTCAGCCGGAGAGGTAGAAAGTGCAA
130 CTCAGCCAGCCGGAGAGGTAGAAAGTGCAA
* * ** * * ** *
32940892 GCCGGGGATCAGCCCGATCCTCCACTGTGTGCTATCGGTCTTGCTACCATAACCCCCGATCCGGC
1 GCCGGGGATCAGCCCAATCCCCCACTGCATGCTACCAGTCCCGCTACCACAACCCCCGATCCGGC
** ** * **
32940957 TGGGGCTTAGACATGGAATGAACCTTTTATGCCTAAGCCAACCCATGAAATGGGCGTACGGGTGC
66 TGGGGCTTAGACATGGAATGAACCTACTATGCCTAAGCCAACCCATGAAACAGGCGTACAGGCAC
* *
32941022 TCAGCCAGCCGGAGAGGTAGAATGTGCAG
131 TCAGCCAGCCGGAGAGGTAGAAAGTGCAA
*
32941051 GTCGGGGATC
1 GCCGGGGATC
32941061 GACCTGGTCC
Statistics
Matches: 137, Mismatches: 31, Indels: 2
0.81 0.18 0.01
Matches are distributed among these distances:
159 135 0.99
160 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.29, T:0.20
Consensus pattern (159 bp):
GCCGGGGATCAGCCCAATCCCCCACTGCATGCTACCAGTCCCGCTACCACAACCCCCGATCCGGC
TGGGGCTTAGACATGGAATGAACCTACTATGCCTAAGCCAACCCATGAAACAGGCGTACAGGCAC
TCAGCCAGCCGGAGAGGTAGAAAGTGCAA
Found at i:32947064 original size:26 final size:26
Alignment explanation
Indices: 32947028--32947080 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
32947018 CTAGTTCGAT
*
32947028 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
32947054 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
32947080 C
1 C
32947081 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:32947505 original size:158 final size:159
Alignment explanation
Indices: 32947216--32947507 Score: 406
Period size: 158 Copynumber: 1.8 Consensus size: 159
32947206 TCCTGCTGCC
* *
32947216 ACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAA
1 ACAACCCTCGATCCGACTAGGGCTTAGACATGGAATCAACTCCGTATGCCTAAGCCAACCCACAA
* * * *
32947281 AACGAGCATGCGGGCGCTAAGCCAGCTGGAGAGGCATAATGCGCAAGCCGGGGATCGGCCTGGTC
66 AACGAGCATGCGGGCGCTAAGCCAGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTC
32947346 CCCCATTGCGTGCTACCAGTCTCGCTACG
131 CCCCATTGCGTGCTACCAGTCTCGCTACG
* * * * * **
32947375 ACAACCCTCGGTCCGGCTAGGGCTTATACATGGAA-CAACTTCTTATGCCTAAGCCAACCCATGA
1 ACAACCCTCGATCCGACTAGGGCTTAGACATGGAATCAACTCCGTATGCCTAAGCCAACCCACAA
* * * * * *
32947439 AACGGGCGTGCGGGTGCTCAGCCGGCCGGAGAGGCAGAATGCGTAAGCCGGGGATCGACCCGGTC
66 AACGAGCATGCGGGCGCTAAGCCAGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTC
32947504 CCCC
131 CCCC
32947508 TACGTGCTGT
Statistics
Matches: 114, Mismatches: 19, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
158 83 0.73
159 31 0.27
ACGTcount: A:0.24, C:0.32, G:0.29, T:0.16
Consensus pattern (159 bp):
ACAACCCTCGATCCGACTAGGGCTTAGACATGGAATCAACTCCGTATGCCTAAGCCAACCCACAA
AACGAGCATGCGGGCGCTAAGCCAGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTC
CCCCATTGCGTGCTACCAGTCTCGCTACG
Found at i:32947603 original size:26 final size:26
Alignment explanation
Indices: 32947552--32947604 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
32947542 CCGATCCGAT
* *
32947552 CTTAGATTGGAAATGAACTTCGTATG
1 CTTAGATTGGAAATGAACTCCATATG
**
32947578 CTTAGATTGGTGATGAACTCCATATG
1 CTTAGATTGGAAATGAACTCCATATG
32947604 C
1 C
32947605 CTAAGTGAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.15, G:0.23, T:0.34
Consensus pattern (26 bp):
CTTAGATTGGAAATGAACTCCATATG
Found at i:32949806 original size:26 final size:26
Alignment explanation
Indices: 32949768--32949820 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32949758 TGCTCAAAAT
32949768 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
32949794 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
32949820 C
1 C
32949821 CTAAGCGAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:32950129 original size:159 final size:157
Alignment explanation
Indices: 32949793--32950231 Score: 416
Period size: 159 Copynumber: 2.8 Consensus size: 157
32949783 AACTCCGTAT
* * * * *
32949793 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCGAACCAACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACAAGGAATGAACTCCGTATGCCTAAGC-AACCCATGAAACGAGCGTACGGGCGCTCAG
* * * * * *
32949858 CCGGTTGGAGAGGCAGAATACGCAAGCTGGGGATTAGCCCGATTCCCCCTACGTGCTGCCATTCC
65 CCGGTCGAAGAGGCAGAATACGCAAGCTGAGGATCAGCCCGATCCCCCCTACGTGCTGCCAGTCC
* * *
32949923 TGCTACCGCAACCCTCGGTCCAGTCTGA
130 CGCTACCACAACCCTCGGTCCAGTCGGA
* * * * * * *
32949951 TCTTAGACAGGGAACGAACTCCGTATACATAAGTCAACCCATGAAACGAGCGTACGGGTGCTGAG
1 GCTTAGACAAGGAATGAACTCCGTATGCCTAAG-CAACCCATGAAACGAGCGTACGGGCGCTCAG
* * * * *
32950016 CCGGTCGAAGAGGCATAATACGCAAG-TCGAGGATCGGCTCGATCCCCCTCTGCGTGCTGTCAGT
65 CCGGTCGAAGAGGCAGAATACGCAAGCT-GAGGATCAGCCCGATCCCCC-CTACGTGCTGCCAGT
* *
32950080 CCCGCTACCACAACCCTCGGTTCGAGT-GGG
128 CCCGCTACCACAACCCTCGG-TCCAGTCGGA
* * * * *
32950110 GCTTAGACAAGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCACTCAG
1 GCTTAGACAAGGAATGAACTCCGTATGCCTAAG-CAACCCATGAAACGAGCGTACGGGCGCTCAG
* * * * * * * * *
32950175 CTGATCAGAA-AGGCAGAATGCGCTAGCTGGGGATCGGACCGATACCCCCTGCGTGCT
65 CCGGTC-GAAGAGGCAGAATACGCAAGCTGAGGATCAGCCCGATCCCCCCTACGTGCT
32950232 ACCGATCTTG
Statistics
Matches: 226, Mismatches: 49, Indels: 12
0.79 0.17 0.04
Matches are distributed among these distances:
157 1 0.00
158 99 0.44
159 117 0.52
160 9 0.04
ACGTcount: A:0.25, C:0.29, G:0.28, T:0.18
Consensus pattern (157 bp):
GCTTAGACAAGGAATGAACTCCGTATGCCTAAGCAACCCATGAAACGAGCGTACGGGCGCTCAGC
CGGTCGAAGAGGCAGAATACGCAAGCTGAGGATCAGCCCGATCCCCCCTACGTGCTGCCAGTCCC
GCTACCACAACCCTCGGTCCAGTCGGA
Found at i:32950323 original size:27 final size:27
Alignment explanation
Indices: 32950270--32950324 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 27
32950260 CGATTTGCAT
32950270 CTGTAGACTAGGAATGAACTCCGTATG
1 CTGTAGACTAGGAATGAACTCCGTATG
* *
32950297 CTGTAGACT-GGGATGAACTTCGTTATG
1 CTGTAGACTAGGAATGAACTCCG-TATG
32950324 C
1 C
32950325 CTAAGCTCCA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 11 0.44
27 14 0.56
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.29
Consensus pattern (27 bp):
CTGTAGACTAGGAATGAACTCCGTATG
Found at i:32953081 original size:158 final size:158
Alignment explanation
Indices: 32952526--32953119 Score: 560
Period size: 158 Copynumber: 3.8 Consensus size: 158
32952516 AACTCTGTAT
* *
32952526 GCTTAGACATGGAATGAACT-CCTATGCCTAAGCCAATCCATGAAACGAGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * * * * ** * *
32952590 CTGGCTGGAGAGGCAGAATGCGCAAG-CCGGGGATCGGC-CTGGTCCCTCCTGTGTGCTATCGAT
66 CCGGCCGGAGAGGCAGAATGCACAAGTCC-GGGATCAGCTC-GGTCCCCCCTGCATGCTGTCGGT
* ** * *
32952653 CCTGCTATCGCAACCCTCAGTCCAG-TCCG
129 CCCGCTGCCACAACCCTCAGTCCAGCTCAG
* ** ** * * * *
32952682 ATCTTAGAC-TGGGAATGAACTCTGTATGCCTAAATCATCCCATGAAACGAGCGTGCGGGCGCTG
1 -GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTC
* * * **
32952746 AGCCGGTCAGAGAGGCAAAATGCACAAGTTGGGGATCAGCTCGGTCCCCCTCTGCATGCTGTCGG
64 AGCCGGCCGGAGAGGCAGAATGCACAAGTCCGGGATCAGCTCGGTCCCCC-CTGCATGCTGTCGG
* * ** **
32952811 TCCCGTTGCCACAACCCTCGGTCTGGCTGGG
128 TCCCGCTGCCACAACCCTCAGTCCAGCTCAG
* * * * **
32952842 GCTT--ACATGGAATGAACTCCCTATGACTATGCCAACCCACGAAATGGGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * * * * *
32952905 TCGGCTGGAAAGGCAGAATGCGCAAGTCCGAGATCAGCTCGGTCCCCCACTGCGTGCTG-CTGGT
66 CCGGCCGGAGAGGCAGAATGCACAAGTCCGGGATCAGCTCGGTCCCCC-CTGCATGCTGTC-GGT
32952969 CCCGCTGCCACAACCCTCAGTCCAGCT-AG
129 CCCGCTGCCACAACCCTCAGTCCAGCTCAG
*
32952998 GCTTAGACATGGAATGAACTCCCTATGCCTAAGTCAACCCACGAAAC-AGGCGTGCGGGCACTCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGA-GCGTGCGGGCACTCA
* * * * *
32953062 ACCGACCGGAGAGGCAGAATGCACAAGTCAGGGATCAGCCCGATCCCCCCTGCATGCT
65 GCCGGCCGGAGAGGCAGAATGCACAAGTCCGGGATCAGCTCGGTCCCCCCTGCATGCT
32953120 ATCGATCCTA
Statistics
Matches: 345, Mismatches: 81, Indels: 22
0.77 0.18 0.05
Matches are distributed among these distances:
156 7 0.02
157 143 0.41
158 161 0.47
159 32 0.09
160 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
CCGGCCGGAGAGGCAGAATGCACAAGTCCGGGATCAGCTCGGTCCCCCCTGCATGCTGTCGGTCC
CGCTGCCACAACCCTCAGTCCAGCTCAG
Found at i:32953186 original size:26 final size:26
Alignment explanation
Indices: 32953157--32953207 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
32953147 TCGGTCCGAT
*
32953157 CTTAGACTGGGAATGAACTTCGTATA
1 CTTAGACTGGGAATGAACTCCGTATA
*
32953183 CTTAGACTGGGGATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
32953208 GCCTACGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATA
Found at i:32953916 original size:26 final size:26
Alignment explanation
Indices: 32953878--32953930 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
32953868 GGCTCAAAAT
** *
32953878 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACACGGAATCAACTCCGTATG
32953904 CTTAGACACGGAATCAACTCCGTATG
1 CTTAGACACGGAATCAACTCCGTATG
32953930 C
1 C
32953931 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACACGGAATCAACTCCGTATG
Found at i:32956654 original size:26 final size:26
Alignment explanation
Indices: 32956618--32956670 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
32956608 CCAATTTGAT
32956618 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
* *
32956644 CTTAGATTGGGGATGAACTTCGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
32956670 C
1 C
32956671 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTCCGTATG
Found at i:32963309 original size:26 final size:26
Alignment explanation
Indices: 32963271--32963323 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32963261 GGCTCAAAAT
*
32963271 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTACGTATG
32963297 CTTAGACAT-GGAATGAACTACGTATG
1 CTTAGAC-TGGGAATGAACTACGTATG
32963323 C
1 C
32963324 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:32963804 original size:26 final size:26
Alignment explanation
Indices: 32963768--32963819 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
32963758 TCTGGTCTGA
*
32963768 TCTTAGACTGGGAATGAACTTCGTAT
1 TCTTAGACTGGGAATGAACTCCGTAT
*
32963794 TCTTAGACTGGGGATGAACTCCGTAT
1 TCTTAGACTGGGAATGAACTCCGTAT
32963820 GCCTAAGTCA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (26 bp):
TCTTAGACTGGGAATGAACTCCGTAT
Found at i:32964167 original size:26 final size:26
Alignment explanation
Indices: 32964136--32964188 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
32964126 CCGGTATGAT
32964136 CTTAGAC-TGGGAATGAACT-TCGTATG
1 CTTAGACAT-GGAATGAACTGT-GTATG
32964162 CTTAGACATGGAATGAACTGTGTATG
1 CTTAGACATGGAATGAACTGTGTATG
32964188 C
1 C
32964189 CTAACCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTGTGTATG
Found at i:32964687 original size:26 final size:26
Alignment explanation
Indices: 32964637--32964689 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
32964627 CTGGTCTGAT
**
32964637 CTTAGACTAGGAATGAACTTTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
32964663 CTTAGACTAAGG-ATGAACTCCGTATG
1 CTTAGACT-AGGAATGAACTCCGTATG
32964689 C
1 C
32964690 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:32966518 original size:26 final size:26
Alignment explanation
Indices: 32966489--32966541 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
32966479 CTGGTTCGAT
32966489 CTTAGACTGAGAATGAACT-TCGTATG
1 CTTAGACTGAGAATGAACTCT-GTATG
* *
32966515 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGAGAATGAACTCTGTATG
32966541 C
1 C
32966542 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCTGTATG
Found at i:32968480 original size:26 final size:27
Alignment explanation
Indices: 32968429--32968486 Score: 75
Period size: 26 Copynumber: 2.2 Consensus size: 27
32968419 GGCTCAAAAT
*
32968429 CTTAGACTGAGAATGAACTCTATATG-
1 CTTAGACTGAGAATGAACTCCATATGC
*
32968455 CTTAGACATG-GAATGAACTCCGTATGC
1 CTTAGAC-TGAGAATGAACTCCATATGC
32968482 CTTAG
1 CTTAG
32968487 CCAACCCATA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
26 21 0.75
27 7 0.25
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (27 bp):
CTTAGACTGAGAATGAACTCCATATGC
Found at i:32968811 original size:26 final size:26
Alignment explanation
Indices: 32968770--32968822 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
32968760 CTGGTCTAAT
32968770 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
32968796 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
32968822 C
1 C
32968823 CTAAATCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:32969428 original size:160 final size:159
Alignment explanation
Indices: 32969164--32969667 Score: 554
Period size: 160 Copynumber: 3.2 Consensus size: 159
32969154 ATTCCGTATG
* * *
32969164 CTTAGACATGGAATGAACTCCGTATGCCCAAGCCAACCTATGAAACGAGCGTACGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * *
32969229 TGGTCGGAGAGGTAGAATGCGTAAGCTGACGATCGGCTCGATCCCCTCCATGCTTGCTGTCGATC
66 TGGTCGGAGAGGTAGAATGCGTAAGCCGAGGATCGGCTCGATCCCCTCCATGC-TGCTATCGATC
* * *
32969294 TTGCTATCATAATCCTCGGTCCGATCCGAT
130 CTGCTACCATAACCCTCGGTCCGATCCGAT
* * * *
32969324 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGCGGGCGTTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * * * * ** * *
32969388 CCGGTCGGAGAGGCATAATGCGCAAGCCGGGGATCGGCTCGGTTTCCCTTTTATG-TGCTATTGG
65 CTGGTCGGAGAGGTAGAATGCGTAAGCCGAGGATCGGCTC-G-ATCCCCTCCATGCTGCTATCGA
* * * * **
32969452 TCCCGCTACCACAACCCTCGGTCCG-GCTGGGG
128 TCCTGCTACCATAACCCTCGGTCCGATC-CGAT
* * * *
32969484 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAGGAAACGA-CGTGCAGGTGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* *
32969548 TGGTCGGAGAGGTAGAATGCGTAAGCCGAGGATCGGCCCGATCCCC-CC-TGCGTGCTACCGATC
66 TGGTCGGAGAGGTAGAATGCGTAAGCCGAGGATCGGCTCGATCCCCTCCATGC-TGCTATCGATC
*
32969611 CTGCTACCATAACCCTCAGTCCGATCCGAT
130 CTGCTACCATAACCCTCGGTCCGATCCGAT
*
32969641 CTTGGAC-TGGGAATGAACTCCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
32969668 TTAGACTAGG
Statistics
Matches: 275, Mismatches: 60, Indels: 21
0.77 0.17 0.06
Matches are distributed among these distances:
155 2 0.01
156 1 0.00
157 56 0.20
158 2 0.01
159 46 0.17
160 158 0.57
161 2 0.01
162 8 0.03
ACGTcount: A:0.22, C:0.29, G:0.27, T:0.21
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
TGGTCGGAGAGGTAGAATGCGTAAGCCGAGGATCGGCTCGATCCCCTCCATGCTGCTATCGATCC
TGCTACCATAACCCTCGGTCCGATCCGAT
Found at i:32970574 original size:26 final size:26
Alignment explanation
Indices: 32970545--32970597 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
32970535 CCTATCCGAT
32970545 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
32970571 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
32970597 C
1 C
32970598 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:32971296 original size:26 final size:26
Alignment explanation
Indices: 32971267--32971319 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32971257 CACTCAAAAT
32971267 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
32971293 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCCGTATG
32971319 C
1 C
32971320 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:32971524 original size:128 final size:128
Alignment explanation
Indices: 32971293--32971525 Score: 299
Period size: 128 Copynumber: 1.8 Consensus size: 128
32971283 ACTCCGTATG
* * * *
32971293 CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCATGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACAAAACGAGCATGCGGGCGCTCAGC
* * * *
32971358 TGGCCGGAGAGGCAGAATGCGGAAGCCGGGGAGTGGCCCGATCCCCTACTGCATGCTGTCGAT
66 CGACCGAAGAGGCAGAATGCGCAAGCCGGGGAGTGGCCCGATCCCCTACTGCATGCTGTCGAT
* * * * *
32971421 CTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACTCACAAAACGAGCGTGCGGGGGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCATAAGCCAACCCACAAAACGAGCATGCGGGCGCTCAG
* *
32971485 CCGACCGAAGAGGCATAATGCGCAAGCTGGGGA-TCGGCCCG
65 CCGACCGAAGAGGCAGAATGCGCAAGCCGGGGAGT-GGCCCG
32971526 GCCCCCCTCT
Statistics
Matches: 88, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
127 2 0.02
128 86 0.98
ACGTcount: A:0.26, C:0.26, G:0.32, T:0.16
Consensus pattern (128 bp):
CTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACAAAACGAGCATGCGGGCGCTCAGC
CGACCGAAGAGGCAGAATGCGCAAGCCGGGGAGTGGCCCGATCCCCTACTGCATGCTGTCGAT
Found at i:32973061 original size:26 final size:26
Alignment explanation
Indices: 32973025--32973075 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
32973015 TTGATCCGAT
*
32973025 CTTAGACTGGGAATGAACTTCGTATC
1 CTTAGACTGGGAATGAACTCCGTATC
*
32973051 CTTAGACTGGGGATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
32973076 GCCTAAGTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATC
Found at i:32973432 original size:26 final size:26
Alignment explanation
Indices: 32973394--32973446 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
32973384 CCGGTCCGAT
32973394 CTTAGACTGGGAATGAACCCCATATG
1 CTTAGACTGGGAATGAACCCCATATG
* *
32973420 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACCCCATATG
32973446 C
1 C
32973447 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACCCCATATG
Found at i:32973790 original size:159 final size:157
Alignment explanation
Indices: 32973419--32973798 Score: 435
Period size: 157 Copynumber: 2.4 Consensus size: 157
32973409 AACCCCATAT
*
32973419 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
* * * * *
32973484 CCAGCCGGAGAGGCAGAATGCACAAGCCAGGGAACGGCCAGGTCCCCCCTGGTGTTGTCAATCCT
66 CCAACCGGAGAGGCAGAATGCACAAGCCAGGGAACGGCCAGATCCCCCCTGGCGCTGCCAATCCT
* ** * *
32973549 GCTACCGTAACCCTTGGTCTGGTCTGA
131 ACTACCACAACCCTCGGTCCGGTCTGA
* ** * * * *
32973576 TCTTAGAC-TAGGAATGAACTCCGTATGCCTAAGTTAGCCCACGAAATGAGCGTACGGGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCA
* * * * *
32973640 GCCAACCGGAGAGGCATAATGCGCAAGCC-GAGGATCGGCCCGATCCCCCTCTGCGCGCTGCCAG
65 GCCAACCGGAGAGGCAGAATGCACAAGCCAG-GGAACGGCCAGATCCCCC-CTG-GCGCTGCCAA
* *
32973704 TCCTACTGCCACAACCCTCGGTCCGG-CTAGG
127 TCCTACTACCACAACCCTCGGTCCGGTCT-GA
* * *
32973735 GCTTAGACATGGAATGAACTCCGTATGCGTAAGCCAACCCATGAAACGAGCGTAC-GACGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
32973799 TCGGCTGGAG
Statistics
Matches: 182, Mismatches: 35, Indels: 11
0.80 0.15 0.05
Matches are distributed among these distances:
156 2 0.01
157 95 0.52
158 11 0.06
159 73 0.40
160 1 0.01
ACGTcount: A:0.25, C:0.31, G:0.27, T:0.17
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
CCAACCGGAGAGGCAGAATGCACAAGCCAGGGAACGGCCAGATCCCCCCTGGCGCTGCCAATCCT
ACTACCACAACCCTCGGTCCGGTCTGA
Found at i:32974573 original size:26 final size:26
Alignment explanation
Indices: 32974542--32974594 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
32974532 CCGATCCGAT
*
32974542 CTTAGACTGGGAATGAAGTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
32974568 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
32974594 C
1 C
32974595 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:32975759 original size:20 final size:20
Alignment explanation
Indices: 32975734--32975772 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
32975724 ATGGATAACT
32975734 CTGTATGCATACTGGGGATC
1 CTGTATGCATACTGGGGATC
32975754 CTGTATGCATACTGGGGAT
1 CTGTATGCATACTGGGGAT
32975773 GCCTCCTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.21, C:0.18, G:0.31, T:0.31
Consensus pattern (20 bp):
CTGTATGCATACTGGGGATC
Found at i:32976436 original size:26 final size:26
Alignment explanation
Indices: 32976400--32976452 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
32976390 CCAGTCCGAT
32976400 CTTAGACTGGGAATGAACTCTGTATA
1 CTTAGACTGGGAATGAACTCTGTATA
* *
32976426 CTTAGACTGGGGATGAACTTTGTATA
1 CTTAGACTGGGAATGAACTCTGTATA
32976452 C
1 C
32976453 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATA
Found at i:32977155 original size:26 final size:26
Alignment explanation
Indices: 32977117--32977167 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
32977107 GGCTCAAAAT
*
32977117 CTTAGACTGGGAATGAACTCTGTATC
1 CTTAGACTGGGAATGAACTCCGTATC
*
32977143 CTTAGACAT-GGAATGATCTCCGTAT
1 CTTAGAC-TGGGAATGAACTCCGTAT
32977168 GCCTAAGCCA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATC
Found at i:32977842 original size:26 final size:26
Alignment explanation
Indices: 32977813--32977865 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
32977803 CCGGTTCAAT
32977813 CTTAGAC-TGGGAAAGAACTCCGTATG
1 CTTAGACAT-GGAAAGAACTCCGTATG
* *
32977839 CTTAGACATGGAAAGAATTCTGTATG
1 CTTAGACATGGAAAGAACTCCGTATG
32977865 C
1 C
32977866 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.17, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAAAGAACTCCGTATG
Found at i:32978140 original size:159 final size:159
Alignment explanation
Indices: 32977838--32978254 Score: 430
Period size: 159 Copynumber: 2.6 Consensus size: 159
32977828 AACTCCGTAT
** * * *
32977838 GCTTAGACATGGAAAGAATTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATCAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * * *
32977903 -TCGACCGGAGAGGCAGAATGCGCAAGTTGGGGATCGGCCTGGTCCCCCTTTGTGTGTCATCGAT
66 CT-GATCGGAGAGGCAGAATGCGCAAGTCGGGGATCGACCTGGTCCCCCTCTGCGTGTCACCGAT
** ** *
32977967 CATGCTACTGCAACCCTCGGTCCGATCCA-A
130 CACACTACCACAACCCTCAGTCCGA-CCAGA
* * * ** * *
32977997 TCTTAGAC-TGGGAATCAACTTCGTATGCCTAAGTCAACAAATGAAATGAGCGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATCAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
* *
32978061 GCTGATCGGAGAGGCATAATGCGCAAGTCGGGGATCGACCTGGTCCCCCTCTGCGTG-CTACCGG
65 GCTGATCGGAGAGGCAGAATGCGCAAGTCGGGGATCGACCTGGTCCCCCTCTGCGTGTC-ACCGA
* * * *
32978125 TCCCACTGCCACAACCCTCAGTCCGACTAGG
129 TCACACTACCACAACCCTCAGTCCGACCAGA
* * * *
32978156 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGAGCGCTCAG
1 GCTTAGACATGGAATCAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * *
32978221 C-CAGTCGGAAAGGCAGAATGCGCAAGCCGGGGAT
66 CTGA-TCGGAGAGGCAGAATGCGCAAGTCGGGGAT
32978255 TGGCCCGATC
Statistics
Matches: 208, Mismatches: 44, Indels: 12
0.79 0.17 0.05
Matches are distributed among these distances:
158 5 0.02
159 201 0.97
160 2 0.01
ACGTcount: A:0.24, C:0.28, G:0.29, T:0.19
Consensus pattern (159 bp):
GCTTAGACATGGAATCAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
CTGATCGGAGAGGCAGAATGCGCAAGTCGGGGATCGACCTGGTCCCCCTCTGCGTGTCACCGATC
ACACTACCACAACCCTCAGTCCGACCAGA
Found at i:32978344 original size:26 final size:26
Alignment explanation
Indices: 32978315--32978367 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
32978305 CCGGTCCGAT
*
32978315 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
32978341 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
32978367 C
1 C
32978368 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:32979320 original size:26 final size:26
Alignment explanation
Indices: 32979291--32979343 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32979281 CCGATCCGAT
*
32979291 CTTAGACT-GGGACTGAACTCCGTATG
1 CTTAGACTAGGGA-TGAACTACGTATG
32979317 CTTAGACTAGGGATGAACTACGTATG
1 CTTAGACTAGGGATGAACTACGTATG
32979343 C
1 C
32979344 CTAACTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTACGTATG
Found at i:32979645 original size:171 final size:170
Alignment explanation
Indices: 32979316--32979649 Score: 374
Period size: 171 Copynumber: 2.0 Consensus size: 170
32979306 AACTCCGTAT
* * *
32979316 GCTTAGACTAGGGATGAACTACGTATGCCTAACTCAACCCATGAAACGAGCGTGCAGGCGCTCAG
1 GCTTAGACTAGGAATGAACTACGTATGCCTAACTCAACCCACGAAACGAACGTGCAGGCGCTCAG
* * * *
32979381 CCGACCGGAGAGGCAGAATGTACAAGCCGAGGATCAGCCCATTTCCCCTCTGCGTGCTATCGATC
66 CCGACCGGAAAGGCAGAATGCACAAGCCGAGGATCAGCCCA-TTCCCCCCTACGTGCTATCGATC
* *
32979446 TCACTGCCGGTCCTGCTGCCACAACCCTCGGTCCGACTGGG
130 TCACTGCCAGTCCTGCTACCACAACCCTCGGTCCGACTGGG
* *
32979487 GCTTAGAC-ATGGAATGAACTCCGTATGCCTAAGC-CAACCCACGAAATGAACGTGC-GAGCGCT
1 GCTTAGACTA-GGAATGAACTACGTATGCCTAA-CTCAACCCACGAAACGAACGTGCAG-GCGCT
* * * *
32979549 CAGCC-AGTCGGAAAGGCAGAATGCACAAGCCGAGGATCAGTTCGA-TCCCTCCCTACGTGCTGT
63 CAGCCGA-CCGGAAAGGCAGAATGCACAAGCCGAGGATCAG-CCCATTCCC-CCCTACGTGCTAT
* * * **
32979612 CGATC-CTGCTGCTAGTCTTGCTACCGTAACCCTCGGTC
125 CGATCTC-ACTGCCAGTCCTGCTACCACAACCCTCGGTC
32979650 TGCTCCGATC
Statistics
Matches: 136, Mismatches: 20, Indels: 14
0.80 0.12 0.08
Matches are distributed among these distances:
170 8 0.06
171 125 0.92
172 3 0.02
ACGTcount: A:0.24, C:0.31, G:0.25, T:0.19
Consensus pattern (170 bp):
GCTTAGACTAGGAATGAACTACGTATGCCTAACTCAACCCACGAAACGAACGTGCAGGCGCTCAG
CCGACCGGAAAGGCAGAATGCACAAGCCGAGGATCAGCCCATTCCCCCCTACGTGCTATCGATCT
CACTGCCAGTCCTGCTACCACAACCCTCGGTCCGACTGGG
Found at i:32979999 original size:159 final size:159
Alignment explanation
Indices: 32979684--32980029 Score: 374
Period size: 159 Copynumber: 2.2 Consensus size: 159
32979674 AACTCTGTAT
* *
32979684 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGCACCCAG
* ** * * * * * * *
32979749 CCGATCGGAGCGACATAATGCACAAGTCAAGGATCGGCTCGATCCCCCTCTGTGTGCTACCGATC
66 CCGACCAAAGAGACAGAATCCACAAGTCAAGGATCGACCCGATCCCCCTCTGCGTACTACCGATC
*
32979814 CCGCTGCCACAACCCTCGGTCCGGTTAGG
131 CCGCTGCCACAACCCTCGGTCCGGTTAGA
* * * **
32979843 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCCCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGCACCCAG
* * ** **
32979908 CCGGCCAAAGAGGCAGAATCCACAAG-CTGGGGATCGACCCGATCCCCC-CTGCGTACTGTCGAT
66 CCGACCAAAGAGACAGAATCCACAAGTC-AAGGATCGACCCGATCCCCCTCTGCGTACTACCGAT
* * * *
32979971 CCTGCTGTCGCAACCCTCGAGTCTGGTTAGA
130 CCCGCTGCCACAACCCTCG-GTCCGGTTAGA
* *
32980002 TCTTAGAC-TGGGAATGAACTTCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
32980030 TTAGACTGGG
Statistics
Matches: 154, Mismatches: 30, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
158 29 0.19
159 125 0.81
ACGTcount: A:0.25, C:0.31, G:0.26, T:0.19
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGCACCCAG
CCGACCAAAGAGACAGAATCCACAAGTCAAGGATCGACCCGATCCCCCTCTGCGTACTACCGATC
CCGCTGCCACAACCCTCGGTCCGGTTAGA
Found at i:32980054 original size:26 final size:26
Alignment explanation
Indices: 32980003--32980055 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
32979993 CTGGTTAGAT
* *
32980003 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
32980029 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
32980055 C
1 C
32980056 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:32980524 original size:26 final size:26
Alignment explanation
Indices: 32980486--32980538 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
32980476 TGGCTCAAAA
32980486 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
32980512 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
32980538 C
1 C
32980539 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:32980969 original size:158 final size:156
Alignment explanation
Indices: 32980511--32980969 Score: 435
Period size: 158 Copynumber: 2.9 Consensus size: 156
32980501 AACTCCGTAT
*
32980511 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGTGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGA--GTATGGGCGCTCAG
* * * * * * * *
32980576 TCGACTAGAGAGCCAGAATGTGCAGGTCGAGGATCGGCTCGATCCCCCCCTACGT-CTATCGATC
64 TCGAC-AGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGATCCCCCTCTGCGTGCTACCGATC
* * *
32980640 CTGGTACCGCAACCCTCAGTTCGATCTGA
128 CTGCTACCGCAACCCTCAGTTCCAACTGA
* * * * *
32980669 TCTTAGAC-TGGGAATGAACTCCGTAT-CCATAAGTCAACCCATGAAACGAGCATGCGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCC-TAAGCCAACCCACGAAACGAGTATG-GGCGCTCA
* * * * * * * *
32980732 GCCGACCAAAGAGGCATAATGCGTAAACCGAGGATCGACCCGATCCCCCTCTGTGTGCTACCGGT
63 GTCGA-CAGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGATCCCCCTCTGCGTGCTACCGAT
** * * *
32980797 CCCACTGCCACAACCCTCA-TTCCAACTGGG
127 CCTGCTACCGCAACCCTCAGTTCCAACT-GA
** *
32980827 GCTTAGACATGGAATGAACTCTTTATGCCTAAGCCAACCCACGAAACGGACGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAC-GA-GTATGGGCGCTCAG
* * *
32980892 TCGATCGGAGAGGCAGAATGCGCAAGCCGGGGA-CTGGCCCGGT-CCCCTCTGCGTGCTACCGAT
64 TCGA-CAGAGAGGCAGAATGCGCAAGCCGAGGATC-GGCCCGATCCCCCTCTGCGTGCTACCGAT
*
32980955 CTTGCTACCGCAACC
127 CCTGCTACCGCAACC
32980970 GTTGGTTTGG
Statistics
Matches: 235, Mismatches: 55, Indels: 22
0.75 0.18 0.07
Matches are distributed among these distances:
156 3 0.01
157 56 0.24
158 129 0.55
159 44 0.19
160 3 0.01
ACGTcount: A:0.25, C:0.31, G:0.25, T:0.19
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTATGGGCGCTCAGTC
GACAGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGATCCCCCTCTGCGTGCTACCGATCCTG
CTACCGCAACCCTCAGTTCCAACTGA
Found at i:32981016 original size:26 final size:25
Alignment explanation
Indices: 32980980--32981035 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 25
32980970 GTTGGTTTGG
32980980 TCCG-ATGTTAGACTGGGAATGAAC
1 TCCGTATGTTAGACTGGGAATGAAC
* *
32981004 TCCGTATGCTTAGATTGGGGATGAAC
1 TCCGTATG-TTAGACTGGGAATGAAC
32981030 TCCGTA
1 TCCGTA
32981036 CGCCTAAGTC
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
24 4 0.14
25 3 0.11
26 21 0.75
ACGTcount: A:0.25, C:0.18, G:0.29, T:0.29
Consensus pattern (25 bp):
TCCGTATGTTAGACTGGGAATGAAC
Found at i:32981369 original size:26 final size:26
Alignment explanation
Indices: 32981340--32981392 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
32981330 CCGGTCTGAT
*
32981340 CTTAAAC-TGGGAATGAACTCCGTATG
1 CTTAAACAT-GGAATAAACTCCGTATG
* *
32981366 CTTACACATGGATTAAACTCCGTATG
1 CTTAAACATGGAATAAACTCCGTATG
32981392 C
1 C
32981393 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
CTTAAACATGGAATAAACTCCGTATG
Found at i:32981473 original size:354 final size:354
Alignment explanation
Indices: 32980804--32981475 Score: 793
Period size: 354 Copynumber: 1.9 Consensus size: 354
32980794 GGTCCCACTG
* * *
32980804 CCACAACCCTCATTCCAACTGGGGCTTAGACATGGAATGAACTCTTTATGCCTAAGCCAACCCAC
1 CCACAACCCTCAATCCAACTAGGGCTTAGACATGGAATGAACTCTTTATGCCTAAGACAACCCAC
* * * * * *
32980869 GAAACGGACGTACGGGCGCTCAGTCGATCGGAGAGGCAGAATGCGCAAGCCGGGGACTGGCCCGG
66 GAAACAGACATACGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGACTGACCCGA
* * * * * * ** * *
32980934 TCCCCTCTGCGTGCTACCGATCTTGCTACCGCAACCGTTGGTTTGGTCCGATGTTAGACTGGGAA
131 TCCCCCCTACGTGCTACCGATCCTGCTACAGCAACCCTCGGTCCGGTCCGATCTTAAACTGGGAA
* * * * * *
32980999 TGAACTCCGTATGCTTAGATTGGGGATGAACTCCGTACGCCTAAGTCAATAAATGAAACTAGCGT
196 TGAACTCCGTATGCTTACAAT-GGGATAAACTCCGTACGCCTAAGCCAACAAACGAAACTAGCGT
* * * * *
32981064 GCGGGCACTCAGCCGACCGGAGAGGCATAATGCGCAAGTCGGGGATCAGCCCGGTCCCTCTCTGC
260 ACGGGCACTCAGCCGACCAGAGAGGCAGAATACGCAAGCCGGGGATCAGCCCGGTCCCTCTCTGC
32981129 TTGTTATCGATCCCGCTGTCGGTCCTGCTA
325 TTGTTATCGATCCCGCTGTCGGTCCTGCTA
* *
32981159 CCACAACCCTCAATCCAGCTATGGCTTAGACATGGAATGAACT-TTGTATGCCTAAGAC-ACCCA
1 CCACAACCCTCAATCCAACTAGGGCTTAGACATGGAATGAACTCTT-TATGCCTAAGACAACCCA
* * * * *
32981222 TGAAACA-AGCATGCGGGTGCTCAGCCGACCGGAGAGGTAGAATGCGCAAGTCGGGGA-TCGACC
65 CGAAACAGA-CATACGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGACT-GACC
* *
32981285 CGATCCCCCCTACGTGCTATCGATCCTGCTACAGCAACCCTCGGTCCGGTCTGATCTTAAACTGG
128 CGATCCCCCCTACGTGCTACCGATCCTGCTACAGCAACCCTCGGTCCGGTCCGATCTTAAACTGG
* **
32981350 GAATGAACTCCGTATGCTTACACAT-GGATTAAACTCCGTATGCCTAAGCCAACCCACGAAACGT
193 GAATGAACTCCGTATGCTTACA-ATGGGA-TAAACTCCGTACGCCTAAGCCAACAAACGAAAC-T
** * *
32981414 -GCGTACGGGGGCTCAGCC-AGCCAGAGAGGCAGAATACGTAAGCCGGGGA-CTGACCCGGTCCC
255 AGCGTACGGGCACTCAGCCGA-CCAGAGAGGCAGAATACGCAAGCCGGGGATCAG-CCCGGTCCC
32981476 CACTTGCGTG
Statistics
Matches: 263, Mismatches: 46, Indels: 17
0.81 0.14 0.05
Matches are distributed among these distances:
353 8 0.03
354 203 0.77
355 52 0.20
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.20
Consensus pattern (354 bp):
CCACAACCCTCAATCCAACTAGGGCTTAGACATGGAATGAACTCTTTATGCCTAAGACAACCCAC
GAAACAGACATACGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGACTGACCCGA
TCCCCCCTACGTGCTACCGATCCTGCTACAGCAACCCTCGGTCCGGTCCGATCTTAAACTGGGAA
TGAACTCCGTATGCTTACAATGGGATAAACTCCGTACGCCTAAGCCAACAAACGAAACTAGCGTA
CGGGCACTCAGCCGACCAGAGAGGCAGAATACGCAAGCCGGGGATCAGCCCGGTCCCTCTCTGCT
TGTTATCGATCCCGCTGTCGGTCCTGCTA
Found at i:32981523 original size:185 final size:183
Alignment explanation
Indices: 32981204--32981551 Score: 439
Period size: 185 Copynumber: 1.9 Consensus size: 183
32981194 AATGAACTTT
* * * * * *
32981204 GTATGCCTAAGACACCCATGAAACAAGCATGCGGGTGCTCAGCCGACCGGAGAGGTAGAATGCGC
1 GTATGCCTAAGACACCCACGAAACAAGCATACGGGGGCTCAGCCGACCAGAGAGGCAGAATACGC
* *
32981269 AAGTCGGGGATCGACCCGATCCCCCCTACGTGCTATCGATCCTGCTACAGCAACCCTCGGTCCGG
66 AAGCCGGGGATCGACCCGATCCCCCCTACGTGCTATCGATCCTGCTACAGCAAACCTCGGTCCGG
*
32981334 TCTGATCTTAAACTGGGAATGAACTCCGTATGCTTACACATGGATTAAACTCC
131 TCTGATCTGAAACTGGGAATGAACTCCGTATGCTTACACATGGATTAAACTCC
* ** *
32981387 GTATGCCTAAGCCAACCCACGAAACGTGCGTACGGGGGCTCAGCC-AGCCAGAGAGGCAGAATAC
1 GTATGCCTAAGAC-ACCCACGAAACAAGCATACGGGGGCTCAGCCGA-CCAGAGAGGCAGAATAC
* * * * * * * *
32981451 GTAAGCCGGGGA-CTGACCCGGTCCCCACTTGCGTGCTGTCGATCCTGCTGCTGTAAACCTCGGT
64 GCAAGCCGGGGATC-GACCCGATCCCC-CCTACGTGCTATCGATCCTGCTACAGCAAACCTCGGT
* *
32981515 TCGGTCTGATCTGAGACTGGGAATGAACTCCGTATGC
127 CCGGTCTGATCTGAAACTGGGAATGAACTCCGTATGC
32981552 CTAAGTCAAC
Statistics
Matches: 138, Mismatches: 23, Indels: 6
0.83 0.14 0.04
Matches are distributed among these distances:
183 14 0.10
184 60 0.43
185 64 0.46
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (183 bp):
GTATGCCTAAGACACCCACGAAACAAGCATACGGGGGCTCAGCCGACCAGAGAGGCAGAATACGC
AAGCCGGGGATCGACCCGATCCCCCCTACGTGCTATCGATCCTGCTACAGCAAACCTCGGTCCGG
TCTGATCTGAAACTGGGAATGAACTCCGTATGCTTACACATGGATTAAACTCC
Found at i:32981794 original size:159 final size:158
Alignment explanation
Indices: 32981365--32981804 Score: 415
Period size: 159 Copynumber: 2.8 Consensus size: 158
32981355 AACTCCGTAT
* * * * * * * *
32981365 GCTTACACATGGATTAAACTCCGTATGCCTAAGCCAACCCACGAAACGTGCGTACGGGGGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
* * * * * *
32981430 CCAGCCAGAGAGGCAGAATACGTAAGCCGGGGACTGACCCGGTCCCCACT-TGCGTGCTGTCGAT
66 CCGGCGA-AGAGGCAGAATAGGCAAGCCGGGGATTGACCCGGTCCCC-CTCTGCGTGCTATCGAT
* * *** * *
32981494 CCTGCTGCTGTAAACCTCGGTTCGGTCTGA
129 CCCGCTACCACAAACCTCGATTCGGACTGA
* * * * * *
32981524 TCTGAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGTGGGCACTAA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCA
* * * * **
32981588 GCCGACCGGAGAGGCATAAT-GTGCAAGCCGAGGATCAACCCGGTCCCCCTCTGCGTGCTATCGA
65 GCCG-GCGAAGAGGCAGAATAG-GCAAGCCGGGGATTGACCCGGTCCCCCTCTGCGTGCTATCGA
* *
32981652 TCCCGCTACCACAACCCTCGATTC-GACTGGG
128 TCCCGCTACCACAAACCTCGATTCGGACT-GA
*
32981683 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAT-AGGCGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGA-GCGTGCGGGCGCTCA
* * *
32981747 GCCGGTCGAAGAGGCAGAATAGGCAAGCCGGGGATTGGCCCGAT-CCCCTCTACGTGCT
65 GCCGG-CGAAGAGGCAGAATAGGCAAGCCGGGGATTGACCCGGTCCCCCTCTGCGTGCT
32981805 GCCGATCCTA
Statistics
Matches: 221, Mismatches: 51, Indels: 19
0.76 0.18 0.07
Matches are distributed among these distances:
158 20 0.09
159 198 0.90
160 3 0.01
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
CCGGCGAAGAGGCAGAATAGGCAAGCCGGGGATTGACCCGGTCCCCCTCTGCGTGCTATCGATCC
CGCTACCACAAACCTCGATTCGGACTGA
Found at i:32981878 original size:26 final size:26
Alignment explanation
Indices: 32981842--32981894 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
32981832 CCGATCCCAT
*
32981842 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
32981868 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
32981894 C
1 C
32981895 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:32987368 original size:26 final size:26
Alignment explanation
Indices: 32987330--32987382 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32987320 GGCTCAAAAT
*
32987330 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
32987356 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
32987382 C
1 C
32987383 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:32987654 original size:159 final size:157
Alignment explanation
Indices: 32987355--32987789 Score: 507
Period size: 159 Copynumber: 2.7 Consensus size: 157
32987345 AACTCCGTAT
* * *
32987355 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCC-TATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGTGCTCAG
* * * ** * *
32987420 CCGGCCGGAGAGGCATAATACACAAGTTGGGGATCGGTTCGGTACCCCTTTATGTGCTGTCGAAC
65 CCGGTCGGAGAGGCAGAATGCACAAGTTGGGGATCGGCCCGGTCCCCCTTCATGTGCTG-CGAAC
* * * *
32987485 CCGCTGCCACAACCCTCAGTCTGGCTGGG
129 CCACTACCACAACCCTCAGTCCGACTGGG
* *
32987514 GCTTAGACATGGAATGAACTCGCTATGCCTAAACCAACCCACGAAACGGGCGTGCAGGTGCTCAG
1 GCTTAGACATGGAATGAACTC-CTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGTGCTCAG
*
32987579 CCGGTCGGAGAGGTAGAATGCACAAGTTGGGGATCGGCCCGGTCCCCCTCTGCATGCTGCTG-G-
65 CCGGTCGGAGAGGCAGAATGCACAAGTTGGGGATCGGCCCGGTCCCCCT-T-CATG-TGCTGCGA
* ** *
32987642 TCCCACTACCACAACCCTTGGTCCGACTGTG
127 ACCCACTACCACAACCCTCAGTCCGACTGGG
* *
32987673 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCATGCGGGCT-CTCA
1 GCTTAGACATGGAATGAACT-CCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGG-TGCTCA
* ** * * *
32987737 GCCGATCGGAGAGGCAGAATGTGCAAGTCGAGGATCGGCCCGATCCGCCCTTC
64 GCCGGTCGGAGAGGCAGAATGCACAAGTTGGGGATCGGCCCGGTCC-CCCTTC
32987790 GTCCTGCCAA
Statistics
Matches: 237, Mismatches: 32, Indels: 15
0.83 0.11 0.05
Matches are distributed among these distances:
158 1 0.00
159 219 0.92
160 9 0.04
161 3 0.01
162 5 0.02
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.18
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGTGCTCAGC
CGGTCGGAGAGGCAGAATGCACAAGTTGGGGATCGGCCCGGTCCCCCTTCATGTGCTGCGAACCC
ACTACCACAACCCTCAGTCCGACTGGG
Found at i:32987863 original size:26 final size:26
Alignment explanation
Indices: 32987832--32987884 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
32987822 CTAGTATGAT
32987832 CTTAGACTAGGAATGAAC-TCTGTATG
1 CTTAGACTAGGAATGAACTTC-GTATG
* *
32987858 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTTCGTATG
32987884 C
1 C
32987885 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTTCGTATG
Found at i:32988768 original size:26 final size:26
Alignment explanation
Indices: 32988728--32988780 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
32988718 CCAATTCGAT
* *
32988728 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGCAATGAACTCCGTATG
*
32988754 CTTAGACTAGCAATGAACTCTGTATG
1 CTTAGACTAGCAATGAACTCCGTATG
32988780 C
1 C
32988781 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGCAATGAACTCCGTATG
Found at i:32988864 original size:184 final size:185
Alignment explanation
Indices: 32988544--32988891 Score: 457
Period size: 184 Copynumber: 1.9 Consensus size: 185
32988534 GGCTCAAACA
* * *
32988544 CTTAGGCTGGGAATGAACTCCGTATGCTTAGACATTGAATTAACTCCGTATGCCTAAGCCAACCC
1 CTTAGACTGGGAATGAACTCCGTATGCTTAGACATAGAATGAACTCCGTATGCCTAAGCCAACCC
* * * * * * *
32988609 ACAAAACGAGCATGCGGGAGCTCAACCGGCCGGAGAGGTAGAATGCGCAAGCCGGGGATCGACCT
66 ACAAAACGAGCATACGAGAGATCAACCGGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCAACCC
* *
32988674 GGTCCCCC-CTGCGTGCTGCCAATCTTGCTGTCGCAACCCTCGATCCAATTCGAT
131 GGTCCCCCTCTACGTGCTACCAATCTTGCTGTCGCAACCCTCGATCCAATTCGAT
* *
32988728 CTTAGACTGGGAATGAACTCCGTATGCTTAGAC-TAGCAATGAACTCTGTATGCCTAAGTCAACC
1 CTTAGACTGGGAATGAACTCCGTATGCTTAGACATAG-AATGAACTCCGTATGCCTAAGCCAACC
** * * * * * * *
32988792 CATGAAACGAGCGTACGAGCGATCAATCGGCCAGAGAGGCATAATGTGTAAGTCGGGGATCAACC
65 CACAAAACGAGCATACGAGAGATCAACCGGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCAACC
*
32988857 CGGTCCCCCTCTACGTGCTACCGATCTTGCTGTCG
130 CGGTCCCCCTCTACGTGCTACCAATCTTGCTGTCG
32988892 GTCCTACAAC
Statistics
Matches: 138, Mismatches: 24, Indels: 3
0.84 0.15 0.02
Matches are distributed among these distances:
183 2 0.01
184 114 0.83
185 22 0.16
ACGTcount: A:0.25, C:0.28, G:0.25, T:0.21
Consensus pattern (185 bp):
CTTAGACTGGGAATGAACTCCGTATGCTTAGACATAGAATGAACTCCGTATGCCTAAGCCAACCC
ACAAAACGAGCATACGAGAGATCAACCGGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCAACCC
GGTCCCCCTCTACGTGCTACCAATCTTGCTGTCGCAACCCTCGATCCAATTCGAT
Found at i:32989123 original size:26 final size:26
Alignment explanation
Indices: 32989094--32989144 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
32989084 CCGGTCCCAT
32989094 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
32989120 CTTAGACATGGAATGAACTCCGTAT
1 CTTAGACATGGAATGAACTCCGTAT
32989145 TCCTAAGCCA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:32989305 original size:26 final size:26
Alignment explanation
Indices: 32989276--32989328 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
32989266 CCGATCTGAT
*
32989276 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
32989302 CTTAGAGTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
32989328 C
1 C
32989329 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.30, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:32989825 original size:12 final size:12
Alignment explanation
Indices: 32989808--32989838 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
32989798 GAGGGATAGG
32989808 GGGCCAATATTA
1 GGGCCAATATTA
32989820 GGGCCAATATTA
1 GGGCCAATATTA
32989832 GGGCCAA
1 GGGCCAA
32989839 GTACCAGCAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.32, C:0.19, G:0.29, T:0.19
Consensus pattern (12 bp):
GGGCCAATATTA
Found at i:32990039 original size:26 final size:26
Alignment explanation
Indices: 32990010--32990062 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
32990000 GGCTCAAAAT
* *
32990010 CTTAGAC-TGTGAATGAACTCTGTATG
1 CTTAGACATG-GAATAAACTCCGTATG
32990036 CTTAGACATGGAATAAACTCCGTATG
1 CTTAGACATGGAATAAACTCCGTATG
32990062 C
1 C
32990063 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATAAACTCCGTATG
Found at i:32990393 original size:26 final size:26
Alignment explanation
Indices: 32990352--32990407 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
32990342 CTGATCTGAT
* *
32990352 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTAGTATA
32990378 CTTAGACTAGGG-ATGAACTTAGTATA
1 CTTAGACT-GGGAATGAACTTAGTATA
32990404 CTTA
1 CTTA
32990408 AGTCAACCCA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
26 24 0.89
27 3 0.11
ACGTcount: A:0.30, C:0.14, G:0.23, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTAGTATA
Found at i:32990832 original size:158 final size:158
Alignment explanation
Indices: 32990544--32990872 Score: 550
Period size: 158 Copynumber: 2.1 Consensus size: 158
32990534 CTCGGTCCGG
* * * * * *
32990544 CTAAGCCAACCCATAAAACAAGCGTGCGGGTGCTCAGCTGACCGGAGAGGCATAATGCATAAGCT
1 CTAAGCCAACCCACAAAACAAGCGTACGGGCGCTCAGCCGACCGGAGAGGCATAATGCACAAGCC
* * *
32990609 GGGGATCGGCCTGATCCCCCTCTGCATGCTTCGGTCCCACTTCCACAACCCTCAGTTCGACTGGG
66 GGGGATCGGCCCGATCCCCCTCTGCATGCTTCAGTCCCACTGCCACAACCCTCAGTTCGACTGGG
32990674 GCTTAGACATGGAATGAACTCCCTATGC
131 GCTTAGACATGGAATGAACTCCCTATGC
* *
32990702 CTAAGCCAACCCACAAAACAAGCGTATGGGCGCTCAGCCGATCGGAGAGGCATAATGCACAAGCC
1 CTAAGCCAACCCACAAAACAAGCGTACGGGCGCTCAGCCGACCGGAGAGGCATAATGCACAAGCC
*
32990767 GGGGATCGGCCCGGTCCCCCTCTGCATGCTTCAGTCCCACTGCCACAACCCTCAGTTCGACTGGG
66 GGGGATCGGCCCGATCCCCCTCTGCATGCTTCAGTCCCACTGCCACAACCCTCAGTTCGACTGGG
32990832 GCTTAGACATGGAATGAACTCCCTATGC
131 GCTTAGACATGGAATGAACTCCCTATGC
32990860 CTAAGCCAACCCA
1 CTAAGCCAACCCA
32990873 TGAAATGGGC
Statistics
Matches: 159, Mismatches: 12, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
158 159 1.00
ACGTcount: A:0.25, C:0.33, G:0.24, T:0.18
Consensus pattern (158 bp):
CTAAGCCAACCCACAAAACAAGCGTACGGGCGCTCAGCCGACCGGAGAGGCATAATGCACAAGCC
GGGGATCGGCCCGATCCCCCTCTGCATGCTTCAGTCCCACTGCCACAACCCTCAGTTCGACTGGG
GCTTAGACATGGAATGAACTCCCTATGC
Found at i:32990896 original size:158 final size:158
Alignment explanation
Indices: 32990544--32990943 Score: 525
Period size: 158 Copynumber: 2.5 Consensus size: 158
32990534 CTCGGTCCGG
* *** ** * * *
32990544 CTAAGCCAACCCATAAAACAAGCGTGCGGGTGCTCAGCTGACCGGAGAGGCATAATGCATAAGCT
1 CTAAGCCAACCCACAAAACAAGCGCATGGGCACTCAGCCGATCGGAGAGGCATAATGCACAAGCT
* * * *
32990609 GGGGATCGGCCTGATCCCCCTCTGCATGCTTCGGTCCCACTTCCACAACCCTCAGTTCGACTGGG
66 GGGGATCGGCCCGGTCCCCCTCTGCATGCTTCAGTCCCACTGCCACAACCCTCAGTTCGACTGGG
32990674 GCTTAGACATGGAATGAACTCCCTATGC
131 GCTTAGACATGGAATGAACTCCCTATGC
* * *
32990702 CTAAGCCAACCCACAAAACAAGCGTATGGGCGCTCAGCCGATCGGAGAGGCATAATGCACAAGCC
1 CTAAGCCAACCCACAAAACAAGCGCATGGGCACTCAGCCGATCGGAGAGGCATAATGCACAAGCT
32990767 GGGGATCGGCCCGGTCCCCCTCTGCATGCTTCAGTCCCACTGCCACAACCCTCAGTTCGACTGGG
66 GGGGATCGGCCCGGTCCCCCTCTGCATGCTTCAGTCCCACTGCCACAACCCTCAGTTCGACTGGG
32990832 GCTTAGACATGGAATGAACTCCCTATGC
131 GCTTAGACATGGAATGAACTCCCTATGC
** * * * * ** *
32990860 CTAAGCCAACCCA-TGAA-ATGGGCATGCAGGCACTCAGTCGATCGGAGAGGCAGAATGGGCAAA
1 CTAAGCCAACCCACAAAACAAGCGCATG--GGCACTCAGCCGATCGGAGAGGCATAATGCACAAG
* *
32990923 CTGAGGATCAGCCCGGTCCCC
64 CTGGGGATCGGCCCGGTCCCC
32990944 ATACGTGCTG
Statistics
Matches: 214, Mismatches: 26, Indels: 4
0.88 0.11 0.02
Matches are distributed among these distances:
156 6 0.03
157 2 0.01
158 206 0.96
ACGTcount: A:0.25, C:0.32, G:0.26, T:0.17
Consensus pattern (158 bp):
CTAAGCCAACCCACAAAACAAGCGCATGGGCACTCAGCCGATCGGAGAGGCATAATGCACAAGCT
GGGGATCGGCCCGGTCCCCCTCTGCATGCTTCAGTCCCACTGCCACAACCCTCAGTTCGACTGGG
GCTTAGACATGGAATGAACTCCCTATGC
Found at i:32991040 original size:26 final size:26
Alignment explanation
Indices: 32990990--32991040 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
32990980 CTGATCTGAT
*
32990990 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCAGTATG
* *
32991016 CTTAGACTAGGGATGAACTTAGTAT
1 CTTAGACTAGGAATGAACTCAGTAT
32991041 ACCTAAGTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCAGTATG
Found at i:32991387 original size:26 final size:26
Alignment explanation
Indices: 32991358--32991410 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32991348 TCGGTTCGAT
*
32991358 CTTAGAC-TGGGAATGAACTTCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
32991384 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
32991410 C
1 C
32991411 CTAAGGCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:32991590 original size:25 final size:26
Alignment explanation
Indices: 32991542--32991593 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
32991532 CCGATCCGAT
*
32991542 CTTAGACTGAGAATGAACTTCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
*
32991568 CTTAGACTG-GGATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
32991593 C
1 C
32991594 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 15 0.62
26 9 0.38
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:32992204 original size:159 final size:157
Alignment explanation
Indices: 32991778--32992220 Score: 401
Period size: 159 Copynumber: 2.8 Consensus size: 157
32991768 TCCGCATGCT
* * * * *
32991778 TAGACATGGAATAAACTTCATATGCCTAAGCCAACCCATGAAATGAGCATGCGGGTGCTCAACCG
1 TAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCATGCGGGCGCTCAGCCG
* * * * * *** * *
32991843 ATCGGAAAGGTAAAATACGTAAGTCAAAAATCGGCTCGATCCCCCTTGCATGCTGTCGATCCTGC
66 GTCGGAAAGGCAAAATGCGCAAG-CTAGGGTCGGCTCGATCCCCCTTACATGCTGTCGATCCCGC
* * *
32991908 TACCGCAACCCTCGATCCGATCTGATCT
130 TACCACAACCCTCGATCCGATCTGAGCA
* * * * * * *
32991936 TAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTTCAGGCGTTGAGCC
1 TAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCATGCGGGCGCTCAGCC
* * * * * *
32992000 GGTCGGAGAGGCATAATGCGCAAG-TCGGGGATTGGCTCGGTCCCCCTCTACATGCTGTCGGTCC
65 GGTCGGAAAGGCAAAATGCGCAAGCT-AGGG-TCGGCTCGATCCCCCT-TACATGCTGTCGATCC
* * *
32992064 CGTTGCCACAACCCTC-AGTCCGA-CTGGGGCA
127 CGCTACCACAACCCTCGA-TCCGATCT-GAGCA
* *
32992095 TAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCATGCGGGCGCTCAGCCG
1 TAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCATGCGGGCGCTCAGCCG
* * * * * *
32992160 G-CTGGACAGGCAGAATGCACAAGCTAGGGTCGGCTCGATCCCCCCTGCGTGCTGTCGATCC
66 GTC-GGAAAGGCAAAATGCGCAAGCTAGGGTCGGCTCGATCCCCCTTACATGCTGTCGATCC
32992221 TACCATCGTA
Statistics
Matches: 224, Mismatches: 52, Indels: 19
0.76 0.18 0.06
Matches are distributed among these distances:
157 14 0.06
158 99 0.44
159 109 0.49
160 2 0.01
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (157 bp):
TAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCATGCGGGCGCTCAGCCG
GTCGGAAAGGCAAAATGCGCAAGCTAGGGTCGGCTCGATCCCCCTTACATGCTGTCGATCCCGCT
ACCACAACCCTCGATCCGATCTGAGCA
Found at i:32992655 original size:26 final size:26
Alignment explanation
Indices: 32992619--32992671 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
32992609 CTGATCCGAT
32992619 CTTAGACTGGGAATGAAC-TCGCTATG
1 CTTAGACTGGGAATGAACTTCG-TATG
*
32992645 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
32992671 C
1 C
32992672 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:32993916 original size:26 final size:26
Alignment explanation
Indices: 32993878--32993930 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
32993868 GGCTCAAAAT
32993878 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
32993904 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
32993930 C
1 C
32993931 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:32994410 original size:26 final size:26
Alignment explanation
Indices: 32994381--32994431 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
32994371 CGATTCGATC
*
32994381 TTAGACTGGGA-ATGAACTCCGTATGG
1 TTAGA-TGGGAGATGAACTCCCTATGG
*
32994407 TTAGATTGGAGATGAACTCCCTATG
1 TTAGATGGGAGATGAACTCCCTATG
32994432 CCTAAGTCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 4 0.18
26 18 0.82
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.29
Consensus pattern (26 bp):
TTAGATGGGAGATGAACTCCCTATGG
Found at i:32995903 original size:26 final size:26
Alignment explanation
Indices: 32995865--32995917 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
32995855 GGCTCAAAAT
32995865 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
32995891 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
32995917 C
1 C
32995918 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:32996809 original size:26 final size:26
Alignment explanation
Indices: 32996771--32996823 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
32996761 TGCTCATAAT
32996771 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
32996797 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
32996823 C
1 C
32996824 CTAGGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:32997315 original size:26 final size:26
Alignment explanation
Indices: 32997271--32997323 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
32997261 CCGATCCGAT
* *
32997271 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATAAACTCTGAATG
32997297 CTTAGACTAGGG-ATAAACTCTGAATG
1 CTTAGACT-GGGAATAAACTCTGAATG
32997323 C
1 C
32997324 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCTGAATG
Found at i:32998226 original size:157 final size:157
Alignment explanation
Indices: 32997813--32998227 Score: 403
Period size: 159 Copynumber: 2.6 Consensus size: 157
32997803 TCCTGCTACC
* * *
32997813 ACAACCCTC-AGTCCGATCTGATCTTACACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATG
1 ACAACCCTCGA-TCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
* * * * ** *
32997877 AAACGAGTGTACAAGCACTGAGCCGGTCAGAGAGGCATAATGTGTAAGCTGGGGATCGGCCCGAT
65 AAAC-AGGGTACGAGCGCTCAGCCGACCAGAGAGGCATAATGTGTAAGCCGGGGATCGGCCCGAT
*
32997942 CCCCCTATACGTGCTGCCAGTCCCACTGTG
129 CCCCC-ATACATGCTGCCAGTCCCACTGTG
* * ** ** * *
32997972 ACAACCCTCGGTCCGGTTGGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACG
1 ACAACCCTCGATCCGATCCGATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
* * * * * *
32998036 AAACAGGCGTGCGGGCGCTCAGCCGACCGGAGAGGCA-GATTTCGTAAGCCGGGGATCGGCTCGA
65 AAACAGG-GTACGAGCGCTCAGCCGACCAGAGAGGCATAATGT-GTAAGCCGGGGATCGGCCCGA
* * *
32998100 TTCCCCC-TGCATGCTGTC-GATCCTACTGTCG
128 -TCCCCCATACATGCTGCCAG-TCCCACTGT-G
32998131 -C-ACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
1 ACAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
* * * *
32998194 AACAAGGGTACGAGTGGTCAACTGACCAGAGAGG
66 AAC-AGGGTACGAGCGCTCAGCCGACCAGAGAGG
32998228 TAGGGTGCGC
Statistics
Matches: 205, Mismatches: 42, Indels: 20
0.77 0.16 0.07
Matches are distributed among these distances:
156 1 0.00
157 76 0.37
158 25 0.12
159 96 0.47
160 7 0.03
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (157 bp):
ACAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
AACAGGGTACGAGCGCTCAGCCGACCAGAGAGGCATAATGTGTAAGCCGGGGATCGGCCCGATCC
CCCATACATGCTGCCAGTCCCACTGTG
Found at i:32998882 original size:26 final size:26
Alignment explanation
Indices: 32998846--32998898 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
32998836 GGCTCAAAAT
32998846 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
32998872 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
32998898 C
1 C
32998899 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:33000515 original size:26 final size:26
Alignment explanation
Indices: 33000477--33000529 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
33000467 GGCTCAAAAT
33000477 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
33000503 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
33000529 C
1 C
33000530 CTAAGCTAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:33000641 original size:895 final size:890
Alignment explanation
Indices: 32998884--33001620 Score: 4133
Period size: 895 Copynumber: 3.1 Consensus size: 890
32998874 TAGACTGGGG
* * *
32998884 ATGAACT-TCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGCCAACCAGAGAG
1 ATGAACTCT-GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGACCAGAGAG
* * ** * * **
32998948 GCAGGATGCGCAAGCCGAGGATCAAATGGGTGGTAGGTGGATTCGAGCACATAGTCATATTTCTG
65 GCAGGATGCGCAAGCCGGGGATCGAGCGGGTGGTAGGTGGGTTCAAGCACATCTTCATATTTCTG
* *
32999013 CCATGCCAATGCCATTTTTATGGCTTGTAAATTCGTACAATGGTCCCCTAAGCATTCATGTGAAG
130 CCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCATGTGAAG
* * * * *
32999078 TTCCGTGGCAAGATGACCCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACTG-TTCATGAT
195 TTTCGTGGCAAGACGACCCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGC-GATTCAGGAT
* * *
32999142 TTTTTAAAATTCTTTTAGAAATAGTTTTGTGCCCAAATTTGGTAGAGGTGATCCTTGTATTTTTG
259 TTTTTAAAATT-TTTTAGAAAGAGTTTTGTCCCCAAATTTGGTAGAGGTGATCCTTGTATTTTTT
* *
32999207 TTGGCATGCAC-AAAAAATTCTGCTAAAAACTCGAAGTGGAGAAGATTTTGTGACTGTTTGAAAA
323 TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGGAGAAGATTTTGTGACCGTTTGAAAA
32999271 AAGTGTCCCCATTTCAGACACTTTAATGGCTATTGGCAGCAAACCTATAAAATCTCAAATGCTCT
388 AAGTGTCCCCATTTCAGACACTTTAATGGCTATTGGCAGCAAACCTATAAAATCTCAAATGCTCT
*
32999336 TTAAGAGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
453 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
* *
32999401 GCACCCATTGCAAGCATCATTTGCACACACCCCCCCGGCCCCCCAAATCGTCGGAACCCCCAATG
518 GCACCCATTGCAAGCATCATGTGCGCACACCCCCCCGGCCCCCCAAATCGTCGGAACCCCCAATG
* * * *
32999466 TCGTCGGTTAGGCTCTTCGGCAATGCTCTGGCGATGCTCCAGCGATGGTGCCCCAAGCAAAAAAA
583 ACGTCGGTTAGGCTCTCCGGCAATGCTCT-GCGATGCT-CAG-GATGGTGCCCCAGGCGAAAAAA
*
32999531 ATGCCGCACCAGCACATGCCCGAGCCCAGCATGTGCATCGTGCCTCAAAATCTTAGACTGGGAAT
645 ATGCCGCACCAGCACATGCCCGAGCCCAGCATGTGCACCGTGCCTCAAAATCTTAGACTGGGAAT
* * *
32999596 GAACTCCGTATGCTTATACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAATGAGCGTG
710 GAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTG
* * *
32999661 CGGGTGCTCATCGATCGGAGAGGTAGAATGCGCAAGCCGAGGACCGGCTCGGTCCCCCCCTATGT
775 CGGGTGCTCATCGATCGGAGAGGTAGAATGCGCAAGCCGGGGA-CGTCCCGGTCCCCCCCTATGT
*
32999726 GCTATCGATCCTGTTGCTGCAACCCTCAGTCCGGTCTGATCTTTGATTAGGA
839 GCTATCGATCCTGCTGCTGCAACCCTCAGTCCGGTCTGATCTTTGATTAGGA
* *
32999778 ATGAACACTGTATGCCTAAGTTAACCCACGAAACGAGCGTGCGGGCGCTCAACCGACCAGAGAGG
1 ATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGACCAGAGAGG
*
32999843 CAGGATGCGCAAGTCGGGGATCGAGCGGGTGGTAGGTGGGTTCAAGCACATCTTCATATTTCTGC
66 CAGGATGCGCAAGCCGGGGATCGAGCGGGTGGTAGGTGGGTTCAAGCACATCTTCATATTTCTGC
*
32999908 CATGCCAATGCCCTTTTTATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCATGTGAAGT
131 CATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCATGTGAAGT
* **
32999973 TTCATGGCAAGACGACCCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGATTTGGGATTT
196 TTCGTGGCAAGACGACCCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGATTCAGGATTT
*
33000038 TTTAAAATTTTTTAGAAAGAGCTTTGTCCCCAAATTTGGTAGAGGTGATCCTTGTATTTTTTTTG
261 TTTAAAATTTTTTAGAAAGAGTTTTGTCCCCAAATTTGGTAGAGGTGATCCTTGTATTTTTTTTG
* *
33000103 GCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGGAGAAGATTTTGTGACCATTTGAAAAAAG
326 GCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGGAGAAGATTTTGTGACCGTTTGAAAAAAG
* *
33000168 TGTCCCCATTTTAGACACTTTAATGGCAATTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTT
391 TGTCCCCATTTCAGACACTTTAATGGCTATTGGCAGCAAACCTATAAAATCTCAAATGCTC-TTT
* *
33000233 AAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGACCAATATAAGGGCCAAGTACCAGC
455 AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
* *
33000298 ACCCATTGCAAGCATCATGTGCGCACACCCCCCCGGCCCCCCAAATCATCGGAACCCCCAATGCC
520 ACCCATTGCAAGCATCATGTGCGCACACCCCCCCGGCCCCCCAAATCGTCGGAACCCCCAATGAC
* * *
33000363 GTCAGTTAGGCTCTCCAGCAATGCTCTGACGATGCTCTAGTGATGGTGCCCCGGGCGAAAAAAAT
585 GTCGGTTAGGCTCTCCGGCAATGCTCTG-CGATGCTC-AG-GATGGTGCCCCAGGCGAAAAAAAT
* *
33000428 GCCGCACCAGCACATGCCCGAGCCCAGCATGTGCACCATGGCTCAAAATCTTAGACTGGGAATGA
647 GCCGCACCAGCACATGCCCGAGCCCAGCATGTGCACCGTGCCTCAAAATCTTAGACTGGGAATGA
*
33000493 ACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAATGAGCGTGCG
712 ACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCG
* * * *
33000558 GGTGCTCATCAATCGGAGAGGTAGAATACGCAAGCCGGGGATCGTCCCGCTCCCCCCCTGTGTGC
777 GGTGCTCATCGATCGGAGAGGTAGAATGCGCAAGCCGGGGA-CGTCCCGGTCCCCCCCTATGTGC
* * *
33000623 TGTCGATCTTGCTGCTGCAACCCTCAGTCCAGTCTGATCTTTGATTAGGA
841 TATCGATCCTGCTGCTGCAACCCTCAGTCCGGTCTGATCTTTGATTAGGA
* * *
33000673 ATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCTCTCAATCGACCAGAGAGG
1 ATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGACCAGAGAGG
33000738 CAGGATGCGCAAGCCGGGGATCGAGCGGGTGGTAGGTGGGTTCAAGCACATCTTCATATTTCTGC
66 CAGGATGCGCAAGCCGGGGATCGAGCGGGTGGTAGGTGGGTTCAAGCACATCTTCATATTTCTGC
* *
33000803 CATGCCAATGCCATTTCTATGGCTTGTAAATTCATACAATGGTCTCCTAAGCCTTCATGTGAAGT
131 CATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCATGTGAAGT
*
33000868 TTCGTGGCAAGACGACCCGTTTTCTATTTTTCATGATTTTTGAAACCTTTTGCGATTCAGGATTT
196 TTCGTGGCAAGACGACCCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGATTCAGGATTT
33000933 TTTAAAATTTTTTAGAAAGAGTTTTGTCCCCAAATTTGGTAGAGGTGATCCTTGTATTTTTTTTG
261 TTTAAAATTTTTTAGAAAGAGTTTTGTCCCCAAATTTGGTAGAGGTGATCCTTGTATTTTTTTTG
* *
33000998 GCATGCACAAAAAAATTCAGTTAAAAACTCGAAGTGGAGAAGATTTTGTGATCGTTTGAAAAAAG
326 GCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGGAGAAGATTTTGTGACCGTTTGAAAAAAG
*
33001063 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTA
391 TGTCCCCATTTCAGACACTTTAATGGCTATTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTA
*
33001128 AGGGTGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
456 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
* * * *
33001193 CCCA-T-CACA-CATCATGTGCGCACACCCCCCCGGCCCCCCCAATCGCCAGAACCCCCAATAAC
521 CCCATTGCA-AGCATCATGTGCGCACACCCCCCCGGCCCCCCAAATCGTCGGAACCCCCAATGAC
** * * *
33001255 ACCGGTTAGGCTCTCCGGCGATGCTCT--GA----C--GATGGTGCCCCAGGCGAAAAAAATACG
585 GTCGGTTAGGCTCTCCGGCAATGCTCTGCGATGCTCAGGATGGTGCCCCAGGCGAAAAAAATGCC
* * *
33001312 GCACCAGCACATGCCCAAGCCCAGCATGTGCACCGT-CTCTCAAACTCTTAGACTAGGAATGAAC
650 GCACCAGCACATGCCCGAGCCCAGCATGTGCACCGTGC-CTCAAAATCTTAGACTGGGAATGAAC
* *
33001376 TTCGTGAT-CTTAGACATTGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGG
714 TCCGT-ATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGG
* * * * ** * * *
33001440 GTGCTCAGCCGGTCGGAGAGGCAAAATGCATAAGACGGGGACCTGCCCGGT-CCCCCCTACGTGC
778 GTGCTCA-TCGATCGGAGAGGTAGAATGCGCAAGCCGGGGACGT-CCCGGTCCCCCCCTATGTGC
* ** * * * ** *
33001504 TATCAATCCTGCTATTGTAACCCTCAGTCTGGTCTGATCTTAGGCTGGGA
841 TATCGATCCTGCTGCTGCAACCCTCAGTCCGGTCTGATCTTTGATTAGGA
* * * * * * * *
33001554 ATGACCTCCGTATGCCTAAGTCAGCCCACAAAACGAGCGTACGGGTGCT-AAGCCGATCGGAGAG
1 ATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAA-CCGACCAGAGAG
33001618 GCA
65 GCA
33001621 TAATCCACAA
Statistics
Matches: 1681, Mismatches: 150, Indels: 37
0.90 0.08 0.02
Matches are distributed among these distances:
880 2 0.00
881 251 0.15
882 31 0.02
885 1 0.00
889 2 0.00
892 71 0.04
893 63 0.04
894 423 0.25
895 837 0.50
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (890 bp):
ATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGACCAGAGAGG
CAGGATGCGCAAGCCGGGGATCGAGCGGGTGGTAGGTGGGTTCAAGCACATCTTCATATTTCTGC
CATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCATGTGAAGT
TTCGTGGCAAGACGACCCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGATTCAGGATTT
TTTAAAATTTTTTAGAAAGAGTTTTGTCCCCAAATTTGGTAGAGGTGATCCTTGTATTTTTTTTG
GCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGGAGAAGATTTTGTGACCGTTTGAAAAAAG
TGTCCCCATTTCAGACACTTTAATGGCTATTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTA
AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
CCCATTGCAAGCATCATGTGCGCACACCCCCCCGGCCCCCCAAATCGTCGGAACCCCCAATGACG
TCGGTTAGGCTCTCCGGCAATGCTCTGCGATGCTCAGGATGGTGCCCCAGGCGAAAAAAATGCCG
CACCAGCACATGCCCGAGCCCAGCATGTGCACCGTGCCTCAAAATCTTAGACTGGGAATGAACTC
CGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTG
CTCATCGATCGGAGAGGTAGAATGCGCAAGCCGGGGACGTCCCGGTCCCCCCCTATGTGCTATCG
ATCCTGCTGCTGCAACCCTCAGTCCGGTCTGATCTTTGATTAGGA
Found at i:33002156 original size:26 final size:26
Alignment explanation
Indices: 33002118--33002170 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33002108 GGCTCAAAAT
33002118 CTTAGACTGGGAATGAACTACGTATG
1 CTTAGACTGGGAATGAACTACGTATG
*
33002144 CTTAGACAT-GGAATGAACTTCGTATG
1 CTTAGAC-TGGGAATGAACTACGTATG
33002170 C
1 C
33002171 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:33002498 original size:159 final size:159
Alignment explanation
Indices: 33002143--33002560 Score: 466
Period size: 159 Copynumber: 2.6 Consensus size: 159
33002133 AACTACGTAT
* * * *
33002143 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGACCGTGTGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * *
33002208 TCGGCCAAAGAGGTAGAATGCACAAGCCGGGGATC-GACCCGATCTACCCTGCGTGCTGTCTATC
66 CCGGCCGAAGAGGCAGAATGCACAAGCCGGGGATCAGACCCGATCCACCCTGCGTGCTATCGATC
* **
33002272 CTACTGCCACAACCCTCAGTCCGGTTCGA
131 CTACTGCCACAACCCTCAATCCGACTCGA
* * * * *
33002301 TCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * *
33002365 GCCGGCCGAAGAGGCATAATGCACAAGCTGGGGATCAG-CTCGATCCCCCTCTGCGTGCTATCGG
65 GCCGGCCGAAGAGGCAGAATGCACAAGCCGGGGATCAGACCCGATCCACC-CTGCGTGCTATCGA
* * * *
33002429 T-CTCACTGCCACAACCCTTAATCTGACTGGG
129 TCCT-ACTGCCACAACCCTCAATCCGACTCGA
* * * *
33002460 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * *
33002525 GCGACCGAAGAGGCAGAATACGCAAGCCGGGGATCA
66 CCGGCCGAAGAGGCAGAATGCACAAGCCGGGGATCA
33002561 ACTGCATCGC
Statistics
Matches: 213, Mismatches: 42, Indels: 9
0.81 0.16 0.03
Matches are distributed among these distances:
157 1 0.00
158 94 0.44
159 117 0.55
160 1 0.00
ACGTcount: A:0.26, C:0.29, G:0.27, T:0.18
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGGCCGAAGAGGCAGAATGCACAAGCCGGGGATCAGACCCGATCCACCCTGCGTGCTATCGATC
CTACTGCCACAACCCTCAATCCGACTCGA
Found at i:33002660 original size:26 final size:26
Alignment explanation
Indices: 33002622--33002671 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
33002612 GTCTGATCTT
*
33002622 AGACTAGGAATGAACTCCGTATGCTG
1 AGACTAGGAATGAACTCCATATGCTG
* *
33002648 AGACTGGGGATGAACTCCATATGC
1 AGACTAGGAATGAACTCCATATGC
33002672 CTAAGTCAAC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.30, C:0.20, G:0.28, T:0.22
Consensus pattern (26 bp):
AGACTAGGAATGAACTCCATATGCTG
Found at i:33003692 original size:158 final size:158
Alignment explanation
Indices: 33003208--33003692 Score: 379
Period size: 158 Copynumber: 3.1 Consensus size: 158
33003198 TTCGGCGATC
* * * * ** * * * * *
33003208 CTCCATATGCCAAAGCCAACCCACGAAATGAGCGTGCGGGTGTTCAGTCTGCCGGAGAGGTAGAA
1 CTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCATTCAGCCAGCCGAAAAGGCAGAA
* * ** * * *
33003273 TGCATAAGCC-AGGGA-CTGGCCCGATCCCCCCCGCATGCTATCGATCCTGCTACCGCAACCCTC
66 TGCACAAACCGA-GGATCT-ATCCGATCCCCCCTGCGTGCTATCGATCCTGCTGCCGCAACCCTC
* *
33003336 CGTCTGATCTGATCTTAGACTGGGAATGAA
129 AGTCTGATCTAATCTTAGACTGGGAATGAA
* * * * * * * * * *
33003366 CTGCTTATGCCTAAGTCAACCCCCGAAATGAGCGTGGGGGCATTGAGCTAGCCGAAAAGGCATAA
1 CTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCATTCAGCCAGCCGAAAAGGCAGAA
* * *
33003431 TGCACAAACCGAGGATCTATCCGATCCCCCTCTACGTGCTATCGGTCCCGCTGCCGCAACCCTCA
66 TGCACAAACCGAGGATCTATCCGATCCCCC-CTGCGTGCTATCGATCCTGCTGCCGCAACCCTCA
* * **
33003496 GTC-CAGCTAGGGCTTAGACAT-GGAATGAA
130 GTCTGATCTA-ATCTTAGAC-TGGGAATGAA
* * * * * *
33003525 CTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCGGG-TTCTCAGCCGGTCGGAGAGGCAGA
1 CTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCAT-TCAGCCAGCCGAAAAGGCAGA
** * * * * * * *
33003589 ATGTGCAAGCTGGGGATC-AGTTCGATCCCCCCTGCGTGCTGTCGATCCTACTGCCGTAACCCTC
65 ATGCACAAACCGAGGATCTA-TCCGATCCCCCCTGCGTGCTATCGATCCTGCTGCCGCAACCCTC
*
33003653 GGTCTGATCTAATCTTAGACTGGGAATGAA
129 AGTCTGATCTAATCTTAGACTGGGAATGAA
*
33003683 CTCCGTATGC
1 CTCCCTATGC
33003693 TTAGACTAGG
Statistics
Matches: 252, Mismatches: 66, Indels: 18
0.75 0.20 0.05
Matches are distributed among these distances:
157 1 0.00
158 129 0.51
159 121 0.48
160 1 0.00
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.20
Consensus pattern (158 bp):
CTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCATTCAGCCAGCCGAAAAGGCAGAA
TGCACAAACCGAGGATCTATCCGATCCCCCCTGCGTGCTATCGATCCTGCTGCCGCAACCCTCAG
TCTGATCTAATCTTAGACTGGGAATGAA
Found at i:33003707 original size:26 final size:26
Alignment explanation
Indices: 33003666--33003718 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
33003656 CTGATCTAAT
33003666 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
33003692 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
33003718 C
1 C
33003719 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:33005535 original size:26 final size:26
Alignment explanation
Indices: 33005506--33005558 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
33005496 CTGGTCTAAT
33005506 CTTAGAC-TGGAAATGAACTCTGTATG
1 CTTAGACATGG-AATGAACTCTGTATG
33005532 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCTGTATG
33005558 C
1 C
33005559 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCTGTATG
Found at i:33005833 original size:159 final size:159
Alignment explanation
Indices: 33005531--33005903 Score: 378
Period size: 159 Copynumber: 2.3 Consensus size: 159
33005521 AACTCTGTAT
* * *
33005531 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCTATATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGAGCTCAG
* * *
33005596 CCGACCGAAAAGACAGAATGCGCAAGCCGGGGACCACCTCGGTCTCCCCCTGCGTGTTGTCAATC
66 CCGACCGAAAAGACAGAACGCCCAAGCCGGGGACCACCTCGGTCTCCCCCTGCGTGCTGTCAATC
* * *
33005661 CTGTTGCCGCAACCCTCAGTCCGGTCT-GA
131 CTGCTACCACAACCCTCAGTCCGG-CTGGA
* * * *
33005690 TCTTAGAC-TAGGAATGAACTCTATATGCCTAAGTCAACCCACGAAATGAGTGTGCGGGAGCTGA
1 GCTTAGACAT-GGAATGAACTCTATATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGAGCTCA
* * * * * * * **
33005754 GCCGGCCGGAGAGGCATAACGCCCAAGCTGGGGATCGA-CTCGGTC-CTCCTTTGCGTGCTGT-A
65 GCCGACCGAAAAGACAGAACGCCCAAGCCGGGGA-CCACCTCGGTCTC-CCCCTGCGTGCTGTCA
* ** * *
33005816 AGTCTTGCTACCACAACCCTTGGTCTGGCTGGG
128 A-TCCTGCTACCACAACCCTCAGTCCGGCTGGA
** * * *
33005849 GCTTAGACATGGAATGAACTCCCTATGCCTAAGGCAACCCATGAAACGAGCGTGC
1 GCTTAGACATGGAATGAACTCTATATGCCTAAGCCAACCCACGAAATGAGCGTGC
33005904 AAGTGCTCAG
Statistics
Matches: 174, Mismatches: 34, Indels: 12
0.79 0.15 0.05
Matches are distributed among these distances:
158 6 0.03
159 165 0.95
160 3 0.02
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCTATATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGAGCTCAG
CCGACCGAAAAGACAGAACGCCCAAGCCGGGGACCACCTCGGTCTCCCCCTGCGTGCTGTCAATC
CTGCTACCACAACCCTCAGTCCGGCTGGA
Done.