Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 361 of 402
Found at i:33006044 original size:26 final size:26
Alignment explanation
Indices: 33006008--33006060 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
33005998 CCGATCAAAT
*
33006008 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
33006034 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
33006060 C
1 C
33006061 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:33012157 original size:26 final size:26
Alignment explanation
Indices: 33012128--33012180 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
33012118 CCGGTCCGAT
33012128 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
33012154 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
33012180 C
1 C
33012181 CTAAGTAAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:33012534 original size:26 final size:26
Alignment explanation
Indices: 33012496--33012548 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33012486 CTGGTCCGAT
33012496 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
33012522 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
33012548 C
1 C
33012549 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:33012632 original size:368 final size:354
Alignment explanation
Indices: 33011968--33012655 Score: 869
Period size: 368 Copynumber: 1.9 Consensus size: 354
33011958 ACACTTTAAT
* * * *
33011968 GGCTTAGACATTGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTACGGGTGCTTA
1 GGCTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTACGGGTGCTTA
* * * * *
33012033 GTCAATCGAAGAGGTAGAATACGCAAGCCGGGGATCGACCTGGTCCCTCCTGCGTGCTGTTGATC
66 GTCAACCGAAGAGGCAGAATACGCAAGCCGAGGATCGACCCGGTCCCTCCTGCGTGCTGTCGATC
* *
33012098 CTACTGTCGCAAGCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
131 CTACTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTG
* * * * * * *
33012163 GGGATGAACTCCGTATGCCTAAGTAAACCCATGAAACGAGCATGTGAGCGCTCAGTCGGTCGGAG
196 GGAATGAACTCCGTATGCCTAAGCAAACCCACGAAACGAGCATGCGAGCGCTCAGCCGATAGGAG
* * * * ** *
33012228 AGGCATAATGCGTAAGTTGGGGATCAGCCCGATCCCCCTCTGTGTGCTTTCGATCCTACTGCCGG
261 AGGCAGAATGCGCAAGTCGAGGATCAGCCCGATCCCCC-CTACGTGCTATCGATCCTACTGCCGG
33012293 TCTTACTGCCACAACCCTCGGTCCGACTGG
325 TCTTACTGCCACAACCCTCGGTCCGACTGG
* * *
33012323 GGCTTAGACATGGAATGAACTTCGTATGCATAAGCCAACCCACGAAACGAGTGTGCGGGTGCTTA
1 GGCTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTACGGGTGCTTA
* * * *
33012388 G-CAGGCCGGAGAGGCAGAATGCGCAAGTCGAGGATCGACCCGGTCCCCTCCTGCGTGCTGTCGA
66 GTCA-ACCGAAGAGGCAGAATACGCAAGCCGAGGATCGACCCGGT-CCCTCCTGCGTGCTGTCGA
*
33012452 TCCTACTGTTGGTCCTACTGTCATAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCC
129 TCCTAC---T-G---T-C-G-C--AACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCC
* * *
33012517 ATATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGTG
182 ATATGCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCAAACCCACGAAACGAGCATGCGAGCG
*
33012581 CTCAGCCGATAGGAGAGGTAGAATGCGCAAGTCGAGGATC-GCCCCGATCCCCCCTACGTGCTAT
246 CTCAGCCGATAGGAGAGGCAGAATGCGCAAGTCGAGGATCAG-CCCGATCCCCCCTACGTGCTAT
33012645 CGATCCTACTG
310 CGATCCTACTG
33012656 TTGCAACCCT
Statistics
Matches: 280, Mismatches: 37, Indels: 20
0.83 0.11 0.06
Matches are distributed among these distances:
354 2 0.01
355 91 0.32
356 24 0.09
359 1 0.00
360 1 0.00
363 1 0.00
364 1 0.00
365 1 0.00
366 1 0.00
367 20 0.07
368 136 0.49
369 1 0.00
ACGTcount: A:0.23, C:0.27, G:0.27, T:0.22
Consensus pattern (354 bp):
GGCTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTACGGGTGCTTA
GTCAACCGAAGAGGCAGAATACGCAAGCCGAGGATCGACCCGGTCCCTCCTGCGTGCTGTCGATC
CTACTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTG
GGAATGAACTCCGTATGCCTAAGCAAACCCACGAAACGAGCATGCGAGCGCTCAGCCGATAGGAG
AGGCAGAATGCGCAAGTCGAGGATCAGCCCGATCCCCCCTACGTGCTATCGATCCTACTGCCGGT
CTTACTGCCACAACCCTCGGTCCGACTGG
Found at i:33012884 original size:159 final size:157
Alignment explanation
Indices: 33012521--33013023 Score: 528
Period size: 158 Copynumber: 3.2 Consensus size: 157
33012511 AACTCCATAT
* **
33012521 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * * * * *
33012586 CCGATAGGAGAGGTAGAATGCGCAAGTCGAGGATCGCCCCGATCCCCCCTACGTGCTATCGATCC
66 CCGATTGGAGAGGCAGAATGCGCAAGTCG-GGATCGACCCGATCCCCCCTGCATGCTGTCGATCC
* * * * *
33012651 TACTGTTGCAACCCTCGATCTGGTTTGA
130 TACTGTCGCAACCCTCGGTCCGGCTGGA
* ** * *
33012679 TCTTAGAC-TAGGAATGAACTTTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCA
* * * * * * * *
33012743 GCCAATTGGAGAGGCATAATGCGCCAGCCAGGGATCGACCTGGTCCCCTTCTGCATGCTGTCGGT
65 GCCGATTGGAGAGGCAGAATGCGCAAGTC-GGGATCGACCCGATCCCC-CCTGCATGCTGTCGAT
* * * *
33012808 CCCACTGCCACAACCCTCGGTCCGGCTGGG
128 CCTACTGTCGCAACCCTCGGTCCGGCTGGA
* * *
33012838 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGA-TCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGC-ACTCA
* * * *
33012902 GTCGACTGGAGAGACAGAATGCGCAAGTCGGGGATCGGCCCGATCCCCCCTGCATGCTGTCGATC
65 GCCGATTGGAGAGGCAGAATGCGCAAGTC-GGGATCGACCCGATCCCCCCTGCATGCTGTCGATC
* *
33012967 CTACTGTCGCAACCCTCGGTCTGG-TCCGA
129 CTACTGTCGCAACCCTCGGTCCGGCT-GGA
* *
33012996 TCTTAGAC-TGAGAATGAACTCTGTATGC
1 GCTTAGACATG-GAATGAACTCCGTATGC
33013024 TTAGACCGGG
Statistics
Matches: 277, Mismatches: 61, Indels: 14
0.79 0.17 0.04
Matches are distributed among these distances:
157 4 0.01
158 149 0.54
159 122 0.44
160 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.20
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
CCGATTGGAGAGGCAGAATGCGCAAGTCGGGATCGACCCGATCCCCCCTGCATGCTGTCGATCCT
ACTGTCGCAACCCTCGGTCCGGCTGGA
Found at i:33013026 original size:26 final size:26
Alignment explanation
Indices: 33012997--33013049 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
33012987 CTGGTCCGAT
* *
33012997 CTTAGACTGAGAATGAACTCTGTATG
1 CTTAGACCGAGAATGAACTCCGTATG
* *
33013023 CTTAGACCGGGGATGAACTCCGTATG
1 CTTAGACCGAGAATGAACTCCGTATG
33013049 C
1 C
33013050 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACCGAGAATGAACTCCGTATG
Found at i:33014105 original size:159 final size:158
Alignment explanation
Indices: 33013744--33014134 Score: 407
Period size: 159 Copynumber: 2.5 Consensus size: 158
33013734 AACTCCGTAT
* * *
33013744 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTGCAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGCGCTCAG
* * * * * * *
33013809 CCGACC-AGAGAGGCAGAATGCGCAAGCCGGGGATTGGCCCAGTCCTTCCTGCGTGCTGTCGATC
66 CTGGCCGA-AGAGGCAGAATGCGCAAGCCGGGGATCGGCCCAGCCCCTCCTACGTGCTGCCGATC
* * *
33013873 CTGCAGCCTCAACCCTCGATCTGGTCTGA
130 CCGCAGCCTCAACCCTCGATCTCGACTGA
* * * * * * * *
33013902 TCTTAGGC-TGGGAATGAACTCCTTATACATAAGTCAACCTACGAAATGAGCGTGCAGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGCGCTCA
* *
33013966 GCTGGCCGAAGAGGCATAATGCGCAA-CTCGGGGATCGGCCCGATGCCCCT-CTATGTGCTGCCG
65 GCTGGCCGAAGAGGCAGAATGCGCAAGC-CGGGGATCGGCCC-A-GCCCCTCCTACGTGCTGCCG
* * *
33014029 GTCCCGCTGCCAT-AACCCTCGATC-CGACTGGG
127 ATCCCGCAGCC-TCAACCCTCGATCTCGACT-GA
* * *
33014061 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGCGCTCAG
*
33014126 CTGGTCGAA
66 CTGGCCGAA
33014135 TAGGTAAAAT
Statistics
Matches: 188, Mismatches: 37, Indels: 15
0.78 0.15 0.06
Matches are distributed among these distances:
157 2 0.01
158 88 0.47
159 92 0.49
160 6 0.03
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGCGCTCAG
CTGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCAGCCCCTCCTACGTGCTGCCGATCC
CGCAGCCTCAACCCTCGATCTCGACTGA
Found at i:33014218 original size:26 final size:26
Alignment explanation
Indices: 33014189--33014245 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
33014179 CTAGTTCGAT
*
33014189 CTTAGACTGGGAATAAACTTCGTAGG
1 CTTAGACTGGGAATAAACTCCGTAGG
* *
33014215 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTAGG
33014241 CTTAG
1 CTTAG
33014246 TCTGTATGCC
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTAGG
Found at i:33014883 original size:36 final size:36
Alignment explanation
Indices: 33014836--33014907 Score: 144
Period size: 36 Copynumber: 2.0 Consensus size: 36
33014826 AGCATGTGCA
33014836 CCGTGGCTCAAAATCTTAGACTGGGAATGAACTCCG
1 CCGTGGCTCAAAATCTTAGACTGGGAATGAACTCCG
33014872 CCGTGGCTCAAAATCTTAGACTGGGAATGAACTCCG
1 CCGTGGCTCAAAATCTTAGACTGGGAATGAACTCCG
33014908 TATGCTTAGA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.28, C:0.25, G:0.25, T:0.22
Consensus pattern (36 bp):
CCGTGGCTCAAAATCTTAGACTGGGAATGAACTCCG
Found at i:33014924 original size:26 final size:26
Alignment explanation
Indices: 33014886--33014938 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
33014876 GGCTCAAAAT
33014886 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
33014912 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
33014938 C
1 C
33014939 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:33015405 original size:26 final size:26
Alignment explanation
Indices: 33015376--33015430 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 26
33015366 TAACCCCTGG
* *
33015376 TCCGAATTCTTAGATTGGAAATGAAC
1 TCCGAATGCTTAGACTGGAAATGAAC
* **
33015402 TCCGTATGCTTAGACTGGGGATGAAC
1 TCCGAATGCTTAGACTGGAAATGAAC
33015428 TCC
1 TCC
33015431 ATGTGCCTAA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (26 bp):
TCCGAATGCTTAGACTGGAAATGAAC
Found at i:33015802 original size:26 final size:26
Alignment explanation
Indices: 33015764--33015816 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33015754 CTGGTCTGAT
33015764 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
33015790 CTTAGAC-ATGGAATGAATTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
33015816 C
1 C
33015817 CTAAGCCAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:33016419 original size:26 final size:25
Alignment explanation
Indices: 33016377--33016428 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
33016367 GGCTCAAAAT
*
33016377 CTTAGACTGGAATGAACTCCGTATG
1 CTTAGACTGCAATGAACTCCGTATG
33016402 CTTAGACATGCAATGAACTCCGTATG
1 CTTAGAC-TGCAATGAACTCCGTATG
33016428 C
1 C
33016429 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (25 bp):
CTTAGACTGCAATGAACTCCGTATG
Found at i:33016610 original size:26 final size:26
Alignment explanation
Indices: 33016560--33016612 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
33016550 CTGGTCTGAT
* *
33016560 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACACCGTATG
* *
33016586 CTTAGACTGGGGATGAGCACCGTATG
1 CTTAGACTGGGAATGAACACCGTATG
33016612 C
1 C
33016613 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACCGTATG
Found at i:33017317 original size:26 final size:26
Alignment explanation
Indices: 33017288--33017340 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
33017278 CCGATCCGAT
*
33017288 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
33017314 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
33017340 C
1 C
33017341 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:33018931 original size:26 final size:26
Alignment explanation
Indices: 33018902--33018954 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33018892 GTTGGCTTAG
33018902 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
33018928 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
33018954 G
1 G
33018955 ATCAGACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:33019327 original size:171 final size:170
Alignment explanation
Indices: 33018928--33019327 Score: 408
Period size: 171 Copynumber: 2.3 Consensus size: 170
33018918 CCATGTCTAA
* * *** *
33018928 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCAAAGGTTGCAACAGCAGGACCAGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAAGGTTGTGGCAGCAGGACCAGCA
* * *
33018993 GCAGGATCGACAACACGAAGGGGGGACCGGGCTGAGCCCCGACTTCCGCATTCTACCTCTCCGGT
66 GCAGGATCGACAACACGAAGAGGGGACCGGGCTGAGCCCCGACTTCCGCATTATACCTCTCCGGC
* *** * * **
33019058 CGGTTGAGTGCCCGCATGCTCATTTCATGGGTTGACCTAG
131 CAGCCCAATGCCCGAACACTCATTTCATGGGTTGACCTAG
* ** * * * *
33019098 GCATACAGAGTTCATT-CCATGTCTAAGCCCCA-ACCGAACTGAAGGTTATGGTAGCAGGACCGG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGAACCGAAGGTTGTGGCAGCAGGACCAG
* * * * * * ** * *
33019161 CAGCAGGATCGACAGCATGCAGAAGGGGATCTGGCTGATCCCCGACTTGTGCATTATGCCTCTCT
64 CAGCAGGATCGACAACACGAAG-AGGGGACCGGGCTGAGCCCCGACTTCCGCATTATACCTCTCC
* *
33019226 GGCCAGCCCAATGCTCGAACACTCATTTCATGGGTTGACTTAG
128 GGCCAGCCCAATGCCCGAACACTCATTTCATGGGTTGACCTAG
* * *
33019269 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGTGGCAGCAGGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAAGGTTGTGGCAGCAGGA
33019328 TCGATAGCAT
Statistics
Matches: 180, Mismatches: 45, Indels: 9
0.77 0.19 0.04
Matches are distributed among these distances:
169 3 0.02
170 64 0.36
171 110 0.61
172 3 0.02
ACGTcount: A:0.24, C:0.27, G:0.28, T:0.21
Consensus pattern (170 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAAGGTTGTGGCAGCAGGACCAGCA
GCAGGATCGACAACACGAAGAGGGGACCGGGCTGAGCCCCGACTTCCGCATTATACCTCTCCGGC
CAGCCCAATGCCCGAACACTCATTTCATGGGTTGACCTAG
Found at i:33019463 original size:26 final size:26
Alignment explanation
Indices: 33019427--33019478 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
33019417 GTTGGCTTAG
*
33019427 GCATACGGAGTTGATTC-CATGTCTAA
1 GCATACGGAGTTCATTCTCA-GTCTAA
33019453 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCTCAGTCTAA
33019479 AATTGGATCG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCTCAGTCTAA
Found at i:33020137 original size:159 final size:157
Alignment explanation
Indices: 33019933--33020495 Score: 565
Period size: 159 Copynumber: 3.6 Consensus size: 157
33019923 CCTCGGCTTA
* * * * * *
33019933 CGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTTGTTTCGTGGGTTGGCTTAGGCATAG
1 CGCATTATGCCTCTTCGGTCAGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAC
* *
33019998 GGAGTTCATTCCATGTCTAAGCCCCAACCAGACCGAGGGTTGTGGCAGTGGGATCGACAGCATGT
66 GGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTGTGGCAGTGGGATCGACAGCACGT
*
33020063 AGAGGGGGACCACGCTGATCCACGACTTG
131 AGAGGAGGACCA-GCTGATCC-CGACTTG
* * * * * *
33020092 TGCACTATGCCTCTTCGGTCAGCTCAGCGCCCACACGCCCATTTCGTGGGTTGGCTTAGGCATAG
1 CGCATTATGCCTCTTCGGTCAGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAC
* * * * * * *
33020157 GGAGTTCATTCCATGTCTAAGCCCCAGCTGGATCGAGGCTTGTGGCAGCGGGATCGACATCACAT
66 GGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTGTGGCAGTGGGATCGACAGCACGT
** ** * *
33020222 AGAGGAGGATCGGGCCAATCTCTGGCTTG
131 AGAGGAGGA-CCAGCTGATC-CCGACTTG
* * * * * *
33020251 CGCATTATGCCTCTTTGGCCAGCTCAACGCCCGCACGATTGTTTCGTGGGTTGGCTTATGCATAC
1 CGCATTATGCCTCTTCGGTCAGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAC
* ** ** * * * * *
33020316 AGAGTTCATTCCCA-GTCTAAGATCTGATCGGACTGAGGGTTGTGGCAATAGGATCGATAGCACG
66 GGAGTTCATT-CCATGTCTAAGCCCCAACCGGACCGAGGGTTGTGGCAGTGGGATCGACAGCACG
* *
33020380 CAG-GGAGGACCGAGTTGATCCCCGACTTG
130 TAGAGGAGGACC-AGCTGAT-CCCGACTTG
* * * * *
33020409 CGCATTCTACCTCTTCGG-CCGACTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATA
1 CGCATTATGCCTCTTCGGTCAG-CTCAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATA
*
33020473 CGGAGTTCATTCCATATCTAAGC
65 CGGAGTTCATTCCATGTCTAAGC
33020496 ATACGAAGTT
Statistics
Matches: 321, Mismatches: 76, Indels: 15
0.78 0.18 0.04
Matches are distributed among these distances:
157 6 0.02
158 82 0.26
159 228 0.71
160 5 0.02
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.25
Consensus pattern (157 bp):
CGCATTATGCCTCTTCGGTCAGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAC
GGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTGTGGCAGTGGGATCGACAGCACGT
AGAGGAGGACCAGCTGATCCCGACTTG
Found at i:33025810 original size:132 final size:132
Alignment explanation
Indices: 33025538--33025802 Score: 467
Period size: 132 Copynumber: 2.0 Consensus size: 132
33025528 TGGACACTTA
* *
33025538 GCAAACATGCCATTCCCAATGGCAGTCTTGCAAGTAACGAGCTCACTGGTAAGCTCCTCCATCCG
1 GCAAACATGCCATTCCCAATGGCAGTCTTACAAGCAACGAGCTCACTGGTAAGCTCCTCCATCCG
* *
33025603 CTGGTGCATGGCCTCCATGCCATCATGCAAGGTCAGCACTTCAGCCTCTAAGGTCTGATTCTTTT
66 CTGGTGCATGGCCTCCATGCCATCATACAAGGTCAGCACTTCAGCCTCCAAGGTCTGATTCTTTT
33025668 GG
131 GG
*
33025670 GCAAACATGCCATTCCCAATGGCAGTCTTACAAGCAACGAGCTCACTGGTAAGCTCTTCCATCCG
1 GCAAACATGCCATTCCCAATGGCAGTCTTACAAGCAACGAGCTCACTGGTAAGCTCCTCCATCCG
* *
33025735 CTGGTGCATGGCCTCCATGCCATCGTACAAGGTCAGCATTTCAGCCTCCAAGGTCTGATTCTTTT
66 CTGGTGCATGGCCTCCATGCCATCATACAAGGTCAGCACTTCAGCCTCCAAGGTCTGATTCTTTT
33025800 GG
131 GG
33025802 G
1 G
33025803 TGAACATGTC
Statistics
Matches: 126, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
132 126 1.00
ACGTcount: A:0.22, C:0.30, G:0.22, T:0.26
Consensus pattern (132 bp):
GCAAACATGCCATTCCCAATGGCAGTCTTACAAGCAACGAGCTCACTGGTAAGCTCCTCCATCCG
CTGGTGCATGGCCTCCATGCCATCATACAAGGTCAGCACTTCAGCCTCCAAGGTCTGATTCTTTT
GG
Found at i:33027263 original size:26 final size:26
Alignment explanation
Indices: 33027227--33027276 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
33027217 GTTGACTTAG
*
33027227 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
33027253 GCATACAGAGTTCATTCCCAGTCT
1 GCATACAGAGTTCATCCCCAGTCT
33027277 GAGATATGAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:33027764 original size:26 final size:26
Alignment explanation
Indices: 33027728--33027780 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33027718 GTTGCCTTAG
*
33027728 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACAGAGTTCATTCCTA-GTCTAA
33027754 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
33027780 G
1 G
33027781 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:33029176 original size:159 final size:159
Alignment explanation
Indices: 33028952--33029305 Score: 401
Period size: 158 Copynumber: 2.2 Consensus size: 159
33028942 CCGCATGCTC
* * * * *
33028952 GTTTCGTGGGTTGGCTTATGCATAGGGAGTTCATT-CCATGTTTAAGCCCCAACCGGACTGAGGG
1 GTTTCGTGGGTTGGCTTATGCATACGGAGTTCATTCCCATATCTAAGACCCAACCGAACTGAGGG
* * * * *
33029016 TTGTGGCAGCAGGA-CTGGCAGCACGCAGAGGGGGACCGGGCTGACCCCCGGCTTATGTATTATG
66 TTGCGACAGCAGGATC-GACAGCACGCAG-GGGGGACCGGGCCGACCCCCGGCTTATGCATTATG
* * *
33029080 CCTCTTCGGTCGGCTCAA-CGCCCACACACTT
129 CCTCTCCGATCGGCT-AAGCACCCACACACTT
* * ** *
33029111 GTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCA-ATCTAAGATCGGATCGAACTGAGGG
1 GTTTCGTGGGTTGGCTTATGCATACGGAGTTCATTCCCATATCTAAGACCCAACCGAACTGAGGG
* * * * * *
33029175 TTGCGATAGCAGGATCGATAGCACGTAGGGGGGACCGGGCCGATCCCCGGCTTGTGCATTCTGCC
66 TTGCGACAGCAGGATCGACAGCACGCAGGGGGGACCGGGCCGACCCCCGGCTTATGCATTATGCC
* *
33029240 TCTCCGATCGGCTAAGCACCCGCACGCTT
131 TCTCCGATCGGCTAAGCACCCACACACTT
* *
33029269 GTTTCGTGGGTTGGCTTAGGTATACGGAGTTCATTCC
1 GTTTCGTGGGTTGGCTTATGCATACGGAGTTCATTCC
33029306 ATGTCTGAGC
Statistics
Matches: 163, Mismatches: 29, Indels: 7
0.82 0.15 0.04
Matches are distributed among these distances:
157 2 0.01
158 87 0.53
159 70 0.43
160 4 0.02
ACGTcount: A:0.18, C:0.26, G:0.31, T:0.25
Consensus pattern (159 bp):
GTTTCGTGGGTTGGCTTATGCATACGGAGTTCATTCCCATATCTAAGACCCAACCGAACTGAGGG
TTGCGACAGCAGGATCGACAGCACGCAGGGGGGACCGGGCCGACCCCCGGCTTATGCATTATGCC
TCTCCGATCGGCTAAGCACCCACACACTT
Found at i:33029294 original size:158 final size:160
Alignment explanation
Indices: 33028883--33029305 Score: 464
Period size: 159 Copynumber: 2.7 Consensus size: 160
33028873 GGGTTGCAGA
* * * *
33028883 CAGA-GGGGACCGGGCTAATCCCCGGCTTGCGTATTCTGCCTCTCC-AGCCGGCTGAGCACCCGC
1 CAGAGGGGGACCGGGCTGATCCCCGGCTTGTGTATTCTGCCTCTCCGA-TCGGCTAAGCACCCGC
* * * * * * *
33028946 ATGCTCGTTTCGTGGGTTGGCTTATGCATAGGGAGTTCATT-CCATGTTTAAGCCCCAACCGGAC
65 ACGCTTGTTTCGTGGGTTGGCTTATGCATACGGAGTTCATTCCCATATCTAAGACCCAACCGAAC
* * *
33029010 TGAGGGTTGTGGCAGCAGGACTGGCAGCACG
130 TGAGGGTTGCGACAGCAGGACTGACAGCACG
* * * * * * *
33029041 CAGAGGGGGACCGGGCTGACCCCCGGCTTATGTATTATGCCTCTTCGGTCGGCTCAA-CGCCCAC
1 CAGAGGGGGACCGGGCTGATCCCCGGCTTGTGTATTCTGCCTCTCCGATCGGCT-AAGCACCCGC
* * * ** *
33029105 ACACTTGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCA-ATCTAAGATCGGATCGAAC
65 ACGCTTGTTTCGTGGGTTGGCTTATGCATACGGAGTTCATTCCCATATCTAAGACCCAACCGAAC
* *
33029169 TGAGGGTTGCGATAGCAGGA-TCGATAGCACG
130 TGAGGGTTGCGACAGCAGGACT-GACAGCACG
* * *
33029200 TAG-GGGGGACCGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGATCGGCTAAGCACCCGCA
1 CAGAGGGGGACCGGGCTGATCCCCGGCTTGTGTATTCTGCCTCTCCGATCGGCTAAGCACCCGCA
* *
33029264 CGCTTGTTTCGTGGGTTGGCTTAGGTATACGGAGTTCATTCC
66 CGCTTGTTTCGTGGGTTGGCTTATGCATACGGAGTTCATTCC
33029306 ATGTCTGAGC
Statistics
Matches: 216, Mismatches: 43, Indels: 12
0.80 0.16 0.04
Matches are distributed among these distances:
157 2 0.01
158 92 0.43
159 118 0.55
160 4 0.02
ACGTcount: A:0.18, C:0.28, G:0.30, T:0.24
Consensus pattern (160 bp):
CAGAGGGGGACCGGGCTGATCCCCGGCTTGTGTATTCTGCCTCTCCGATCGGCTAAGCACCCGCA
CGCTTGTTTCGTGGGTTGGCTTATGCATACGGAGTTCATTCCCATATCTAAGACCCAACCGAACT
GAGGGTTGCGACAGCAGGACTGACAGCACG
Found at i:33029583 original size:26 final size:26
Alignment explanation
Indices: 33029554--33029624 Score: 117
Period size: 26 Copynumber: 2.7 Consensus size: 26
33029544 GGCAGCACGG
*
33029554 AGTTCATTCCTTGTCTAAGCATACGA
1 AGTTCATTCCATGTCTAAGCATACGA
33029580 AGTTCATTCCATGTCTAAGCATACGA
1 AGTTCATTCCATGTCTAAGCATACGA
33029606 AGTTCATTCCCA-GTCTAAG
1 AGTTCATT-CCATGTCTAAG
33029625 ATCGAACCGG
Statistics
Matches: 43, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
26 40 0.93
27 3 0.07
ACGTcount: A:0.28, C:0.24, G:0.15, T:0.32
Consensus pattern (26 bp):
AGTTCATTCCATGTCTAAGCATACGA
Found at i:33029812 original size:284 final size:284
Alignment explanation
Indices: 33029290--33029832 Score: 653
Period size: 284 Copynumber: 1.9 Consensus size: 284
33029280 TGGCTTAGGT
* * * * *
33029290 ATACGGAGTTCATTCCATGTCTGAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCG
1 ATACGAAGTTCATTCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGAACCAGACCA
* **
33029355 AGGGTTACGACAACAGGACCAGCAACAAGATCGACAGCACCCAGAAGGGACCGAGCCGGTCCCCG
66 AAGGTTACGACAACAGGACCAGCAACAAGATCGACAGCACCCAGAAGGGACCGAGCCAATCCCCG
* * *
33029420 ACTTACGCATTCCGCCTCTTCGGTCAGCTGAGCGCCTAGACTCCCATTTCATGGGTTGGCTTAGG
131 ACTTACGCATTCCGCCTCTTCGATCAGCTAAGCACCTAGACTCCCATTTCATGGGTTGGCTTAGG
* * * *
33029485 CATAGGGAGTTCATTCCATGTCTAAGCCCAGTCGGATCGAGGGTTGTGGCAGCAGAACCGGCAGC
196 CATACGGAGTTCATTCCATGTCTAAGCCCAGCCGGACCGAGGGTTCTGGCAGCAGAACCGGCAGC
33029550 ACGGAGTTCATTCCTTGTCTAAGC
261 ACGGAGTTCATTCCTTGTCTAAGC
*
33029574 ATACGAAGTTCATTCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGAACCGGACCA
1 ATACGAAGTTCATTCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGAACCAGACCA
** * * * * * ** * * *
33029639 AAGGTTGTGGCAGCAGGACCAGTAGCAGGATCGACAGCACGTAGGAGGGACCGGGCCAATCCTCG
66 AAGGTTACGACAACAGGACCAGCAACAAGATCGACAGCACCCAGAAGGGACCGAGCCAATCCCCG
* ** * * * * *** *
33029704 GCTTGTGCATTCTGCCTC-TCGATCGGTTAAGCACC-CG-CATGCTTGTTTCATGGGTTTGCTTA
131 ACTTACGCATTCCGCCTCTTCGATCAGCTAAGCACCTAGAC-T-CCCATTTCATGGGTTGGCTTA
* *
33029766 GGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGG-CCGAGGGTTCTGGCAGCAGGACTGG
194 GGCATACGGAGTTCATTCCATGTCTAAG-CCCAGCC-GGACCGAGGGTTCTGGCAGCAGAACCGG
33029830 CAG
257 CAG
33029833 TGGGATCGAC
Statistics
Matches: 214, Mismatches: 41, Indels: 8
0.81 0.16 0.03
Matches are distributed among these distances:
281 1 0.00
282 2 0.01
283 56 0.26
284 153 0.71
285 2 0.01
ACGTcount: A:0.24, C:0.27, G:0.27, T:0.22
Consensus pattern (284 bp):
ATACGAAGTTCATTCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGAACCAGACCA
AAGGTTACGACAACAGGACCAGCAACAAGATCGACAGCACCCAGAAGGGACCGAGCCAATCCCCG
ACTTACGCATTCCGCCTCTTCGATCAGCTAAGCACCTAGACTCCCATTTCATGGGTTGGCTTAGG
CATACGGAGTTCATTCCATGTCTAAGCCCAGCCGGACCGAGGGTTCTGGCAGCAGAACCGGCAGC
ACGGAGTTCATTCCTTGTCTAAGC
Found at i:33029987 original size:26 final size:26
Alignment explanation
Indices: 33029951--33030003 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
33029941 GTTGACTTAG
33029951 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
33029977 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
33030003 G
1 G
33030004 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:33030342 original size:25 final size:26
Alignment explanation
Indices: 33030293--33030344 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
33030283 GTTGACTTAG
* *
33030293 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATAAGGAGTTCATTTCCAATCTAA
33030319 GCATAAGGAGTTC-TTTCCAATCTAA
1 GCATAAGGAGTTCATTTCCAATCTAA
33030344 G
1 G
33030345 ATCGGACATG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 12 0.50
26 12 0.50
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (26 bp):
GCATAAGGAGTTCATTTCCAATCTAA
Found at i:33030543 original size:183 final size:191
Alignment explanation
Indices: 33030282--33030698 Score: 460
Period size: 195 Copynumber: 2.2 Consensus size: 191
33030272 TTGATTCGTA
* ** *
33030282 GGTTGACTTAGGCATACGGAGTTCATTTCCA-GTCTAAGCATAAGGAGTTCTTTCCAATCTAAGA
1 GGTTGGCTTAGGCATACAAAGTTCA-TTCCATGTCTAAGCATAAGGAGTTCTTCCCAATCTAAGA
*
33030346 TCGGACATGACCGAGGG-T-T-A-C-GA-CAGCAG-G-ATCGACAGCACGTAAGGGGGACCGGGC
65 TCGGACATGACCGAGGGTTGTAAGCAGACCAGCAGAGAATCGACAGCACGTAAGGGGCACCGGGC
* * * *
33030403 CGATCCCCAACTTACGCATTCGGCCTCTCCGACCTACTAAGCGCCCAC-GGCTTGTTTCATG
130 CGATCCCCAACTTACGCATGCGACCTCTCCAACCGACTAAGCGCCCACAGGCTTGTTTCATG
* * * * *
33030464 GGTTGGCTTATGCATATAAAGTTCATTCCATGTCTATGCATATGGAGTTCATTCCCAGTCTAAGA
1 GGTTGGCTTAGGCATACAAAGTTCATTCCATGTCTAAGCATAAGGAGTTC-TTCCCAATCTAAGA
33030529 TCGGACCA-GACCGAGGGTTGTGACAGCAGGACCAGCAGCAGAATCGACAGCACGTAAGGGGCAC
65 TCGGA-CATGACCGAGGGTTGT-A-AGCA-GACCAGCAG-AGAATCGACAGCACGTAAGGGGCAC
* * ** * * * * *
33030593 CGGGTCGATCCCCAGCTTGTGCATGCTACCTCTCCAACCGGCTGAGCGCCCGCATGCTTGTTTCA
125 CGGGCCGATCCCCAACTTACGCATGCGACCTCTCCAACCGACTAAGCGCCCACAGGCTTGTTTCA
33030658 TG
190 TG
** *
33030660 GGTTGGCTTAGGCATACGGAGTTTATTCCATGTCTAAGC
1 GGTTGGCTTAGGCATACAAAGTTCATTCCATGTCTAAGC
33030699 CCCAGCCAGA
Statistics
Matches: 190, Mismatches: 29, Indels: 18
0.80 0.12 0.08
Matches are distributed among these distances:
181 5 0.03
182 37 0.19
183 26 0.14
184 3 0.02
185 1 0.01
188 1 0.01
189 1 0.01
191 2 0.01
192 6 0.03
194 1 0.01
195 62 0.33
196 45 0.24
ACGTcount: A:0.23, C:0.26, G:0.26, T:0.24
Consensus pattern (191 bp):
GGTTGGCTTAGGCATACAAAGTTCATTCCATGTCTAAGCATAAGGAGTTCTTCCCAATCTAAGAT
CGGACATGACCGAGGGTTGTAAGCAGACCAGCAGAGAATCGACAGCACGTAAGGGGCACCGGGCC
GATCCCCAACTTACGCATGCGACCTCTCCAACCGACTAAGCGCCCACAGGCTTGTTTCATG
Found at i:33030892 original size:26 final size:26
Alignment explanation
Indices: 33030855--33030907 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
33030845 GTTGACTTAG
33030855 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
33030881 GCATAC-AGAGTTCATTCCTAGTCTAA
1 GCATACGA-AGTTCATCCCCAGTCTAA
33030907 G
1 G
33030908 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:33031385 original size:26 final size:26
Alignment explanation
Indices: 33031356--33031408 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
33031346 GTTGGCTTAG
33031356 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
33031382 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
33031408 G
1 G
33031409 ATCATACCAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:33032629 original size:26 final size:26
Alignment explanation
Indices: 33032593--33032645 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
33032583 GTTGACTTAG
33032593 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
33032619 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
33032645 G
1 G
33032646 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:33033130 original size:26 final size:26
Alignment explanation
Indices: 33033094--33033146 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33033084 ATTGGCTTAG
33033094 GCATACGGAGTTAATT-CCATGTCTAA
1 GCATACGGAGTTAATTCCCA-GTCTAA
*
33033120 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
33033146 G
1 G
33033147 ATCAGACCCG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAGTCTAA
Found at i:33033523 original size:26 final size:26
Alignment explanation
Indices: 33033489--33033541 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
33033479 GTTGACTTAG
33033489 GCATACGGAGTTCATCCCCAGACTAA
1 GCATACGGAGTTCATCCCCAGACTAA
* *
33033515 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGACTAA
33033541 G
1 G
33033542 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGACTAA
Found at i:33034016 original size:159 final size:158
Alignment explanation
Indices: 33033515--33034008 Score: 460
Period size: 159 Copynumber: 3.1 Consensus size: 158
33033505 CCCAGACTAA
* * * **
33033515 GCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CCAGACCGAGGGTTACGACAGTAGGATCGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAATCGA-ACCGAGGGTTGCGACAGTAGGATCGAT
* * * * ** *
33033579 AGCACGT-ATGGGGGACTGGGCCGATCCTCAACTTGTGCATTCTGCCTCTCCG-GTGAGCTGAGC
65 AGCACGTAAAGGGGGACTGGGCCGATCC-CCACTTGCGCATTATGCCTCTCCGACCG-GCTCAGC
* * *
33033642 GCCCACACG-TCCATTTCGTGGGTTGGCTTAG
128 GCCCGCACGCT-CGTTTCATGGGTTGGCTTAG
* * ** * * * * ** * *
33033673 GCATAAGGAGTTCATT-CCATGTCTGAGCCCCAGTCGGACCGAGGGTTGTGGTAGTGGGACCGAT
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCGAATCGAACCGAGGGTTGCGACAGTAGGATCGAT
** * * *
33033737 AGCACACAAAGGGGGACTAGGCCGATCCCCAGCTTGCGCATTATGCCTCTTC-AGTCGGCTCAGC
65 AGCACGTAAAGGGGGACTGGGCCGATCCCCA-CTTGCGCATTATGCCTCTCCGA-CCGGCTCAGC
* * *
33033801 GCCCGAACGCTCGTTTCATGGGTTGACTTAT
128 GCCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * *
33033832 GCATACAGAGTTCATTCCCAGTCTAAGATTGAATCGAACCGAGGGTTGCGACAGTAGGATTGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAATCGAACCGAGGGTTGCGACAGTAGGATCGATA
* * * * *
33033897 GCACGTAAGGGGGGACTGGGCCGATCCCCGACTTGCGCATTTTGCATCCCCGACCGGCTTAGCGC
66 GCACGTAAAGGGGGACTGGGCCGATCCCC-ACTTGCGCATTATGCCTCTCCGACCGGCTCAGCGC
* **
33033962 CCGCATGCTCGTTTCATTTGTTGGCTTAG
130 CCGCACGCTCGTTTCATGGGTTGGCTTAG
33033991 GCATACGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
33034009 ATCTCTAAAC
Statistics
Matches: 260, Mismatches: 66, Indels: 19
0.75 0.19 0.06
Matches are distributed among these distances:
157 3 0.01
158 48 0.18
159 202 0.78
160 7 0.03
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGAATCGAACCGAGGGTTGCGACAGTAGGATCGATA
GCACGTAAAGGGGGACTGGGCCGATCCCCACTTGCGCATTATGCCTCTCCGACCGGCTCAGCGCC
CGCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:33035245 original size:26 final size:26
Alignment explanation
Indices: 33035215--33035267 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
33035205 GTTGGCTTAG
33035215 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
33035241 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
33035267 G
1 G
33035268 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:33036462 original size:26 final size:26
Alignment explanation
Indices: 33036433--33036488 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
33036423 TGGGTTGACT
33036433 TAAGCATACGGAGTTCA-TCTCCAGTC
1 TAAGCATACGGAGTTCATTC-CCAGTC
*
33036459 TAAGCATACGGTGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
33036485 TAAG
1 TAAG
33036489 ATCAGACCGG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 26 0.93
27 2 0.07
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.29
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:33037678 original size:26 final size:26
Alignment explanation
Indices: 33037642--33037694 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
33037632 GTTGACTTAG
* *
33037642 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
*
33037668 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
33037694 G
1 G
33037695 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:33038109 original size:22 final size:22
Alignment explanation
Indices: 33038081--33038123 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
33038071 TGATCCCCGG
*
33038081 CTTGCGCATTATGCCTCTCCGA
1 CTTGCGCATTATACCTCTCCGA
*
33038103 CTTGCGCATTCTACCTCTCCG
1 CTTGCGCATTATACCTCTCCG
33038124 GTCGGCTCAG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.12, C:0.40, G:0.16, T:0.33
Consensus pattern (22 bp):
CTTGCGCATTATACCTCTCCGA
Found at i:33038196 original size:26 final size:26
Alignment explanation
Indices: 33038166--33038218 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33038156 GTTGACTTAG
33038166 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
33038192 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
33038218 G
1 G
33038219 ATCAAACCCG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:33038350 original size:197 final size:197
Alignment explanation
Indices: 33038103--33038586 Score: 555
Period size: 197 Copynumber: 2.5 Consensus size: 197
33038093 GCCTCTCCGA
*
33038103 CTTGCGCATTCTACCTCTCCGGTCGGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGC
1 CTTGCGCATTCTACCTCTCCGGTAGGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGC
** *
33038168 ATACGGAGTTCATTCCATGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCA-AACCCGACT
66 ATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGAT-AGAACCCGACC
* * * * *
33038232 GAGGGTTGCGGTAGTAGGACCAGCAGCAGGATCGACAGCACGCAG-GGGAGGACTGGGTCGATCC
130 GAGGGTTGCGGCAGCAAGACCAACAGCAGGATCGACAGCACGCAGAGGG-GGACCGGGTCGATCC
33038296 CCAG
194 CCAG
* * * * *
33038300 CTTGCGCATTCTGCCTCTCCGGTAGGCTGAGTGCCCGCACAG-TTGTTTCATGGGTTGGCTTAGG
1 CTTGCGCATTCTACCTCTCCGGTAGGCTCAGCGCCCGCAC-GCTCGTTTCATGGGTTGACTTAGG
* * **
33038364 CATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCTCAGTCTAAGATAGGACTGGACC
65 CATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATAGAACCCGACC
** *
33038429 GAGGGTTGCGGCAGCAAGACCAACAGCAGGATCGGTAGCTCGCAGAGGGGGACCGGGTCGATCCC
130 GAGGGTTGCGGCAGCAAGACCAACAGCAGGATCGACAGCACGCAGAGGGGGACCGGGTCGATCCC
**
33038494 TGG
195 CAG
* * * * ** * * * * * *
33038497 CTTGTGCCTTATGCCTCTCTAGCATGTTCAGCACCCGTACGCTCGTTTCGTGGGTTGACCTTA-G
1 CTTGCGCATTCTACCTCTCCGGTAGGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGA-CTTAGG
* *
33038561 CATATGGAGTTAATTCCCA-GTCTAAG
65 CATACGGAGTTCATT-CCATGTCTAAG
33038587 ATTGGATCGG
Statistics
Matches: 241, Mismatches: 40, Indels: 12
0.82 0.14 0.04
Matches are distributed among these distances:
196 2 0.01
197 228 0.95
198 11 0.05
ACGTcount: A:0.20, C:0.26, G:0.28, T:0.25
Consensus pattern (197 bp):
CTTGCGCATTCTACCTCTCCGGTAGGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGC
ATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATAGAACCCGACCG
AGGGTTGCGGCAGCAAGACCAACAGCAGGATCGACAGCACGCAGAGGGGGACCGGGTCGATCCCC
AG
Found at i:33038393 original size:26 final size:26
Alignment explanation
Indices: 33038363--33038415 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33038353 GTTGGCTTAG
*
33038363 GCATACGGAGTTCATTC-CATGTCTAA
1 GCATACAGAGTTCATTCTCA-GTCTAA
33038389 GCATACAGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATTCTCAGTCTAA
33038415 G
1 G
33038416 ATAGGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCTCAGTCTAA
Found at i:33038767 original size:26 final size:26
Alignment explanation
Indices: 33038715--33038768 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
33038705 TGGGTTGGCT
**
33038715 TAGGCATACGGAGTTCATTCCTTGTC
1 TAGGCATACGGAGTTCATTCCCAGTC
33038741 TAGGCATACGGAGTTCATTCCCAGTC
1 TAGGCATACGGAGTTCATTCCCAGTC
33038767 TA
1 TA
33038769 AGATCAGTCT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.22, C:0.24, G:0.22, T:0.31
Consensus pattern (26 bp):
TAGGCATACGGAGTTCATTCCCAGTC
Found at i:33040096 original size:197 final size:197
Alignment explanation
Indices: 33039710--33040097 Score: 460
Period size: 197 Copynumber: 2.0 Consensus size: 197
33039700 TGCGCATCCT
* * * ** **
33039710 GCCTCTCTGGTCGGCTGAGTGCCCGCACACTCGTTTTGTGGGTTGACTTAGGCATATGGAGTTCA
1 GCCTCTCCGGTCGGCTCAGTGCCCGCACACTCATTTCATGGGTTGACTTAGGCATACAGAGTTCA
* *
33039775 TCCCAATCTAAGCATACAGAGTTCATTCTCAGTCTAAGATCAGACCAGACCGATGGTTGCGAAAG
66 TCCCAATCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGAAAG
** * * *** *
33039840 AAGGATCAGCAGCACGTAGAGGGGGATTGGGCTGATCCCCGGCTTGTGCATTTTGCCTCTCCGAT
131 AAGGATCAGCAGCACACAGAGGGGGATCGGGCTGATCCCCGACTTACACATTCTGCCTCTCCGAT
33039905 CG
196 CG
* *
33039907 GCCTCTCCGGTCGGTTCAGTGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCA
1 GCCTCTCCGGTCGGCTCAGTGCCCGCACACTCATTTCATGGGTTGACTTAGGCATACAGAGTTCA
* * * * * *
33039972 TCCCTAGTCTAATCATAC-GTAGTTCATTCCCAGTCTAATATCAGACCGGATCGAGGGTTGCGAT
66 TCCC-AATCTAAGCATACAG-AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGAA
* * *
33040036 AGCAGGATC-GATAGCACACA-AGGGGGATCGGG-TCGATCCTCGACTTACACATTCTGCCTCTC
129 AGAAGGATCAG-CAGCACACAGAGGGGGATCGGGCT-GATCCCCGACTTACACATTCTGCCTCTC
33040098 TGACCGGCTG
Statistics
Matches: 159, Mismatches: 28, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
196 1 0.01
197 95 0.60
198 63 0.40
ACGTcount: A:0.22, C:0.26, G:0.26, T:0.26
Consensus pattern (197 bp):
GCCTCTCCGGTCGGCTCAGTGCCCGCACACTCATTTCATGGGTTGACTTAGGCATACAGAGTTCA
TCCCAATCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGAAAG
AAGGATCAGCAGCACACAGAGGGGGATCGGGCTGATCCCCGACTTACACATTCTGCCTCTCCGAT
CG
Found at i:33040849 original size:26 final size:26
Alignment explanation
Indices: 33040801--33040851 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
33040791 GTTAACTTAG
*
33040801 GCATACGGAGTTCATCCATAGTCTAA
1 GCATACGGAGTTCATCCACAGTCTAA
33040827 GCATACGGAGTTCATTCC-CAGTCTA
1 GCATACGGAGTTCA-TCCACAGTCTA
33040852 GGATCGAATC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATCCACAGTCTAA
Found at i:33041199 original size:26 final size:26
Alignment explanation
Indices: 33041169--33041221 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
33041159 GTTGACTTAG
* *
33041169 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGGTCATCCCCAGTCTAA
*
33041195 GCATACAGAGGTCATTCCCAGTCTAA
1 GCATACAGAGGTCATCCCCAGTCTAA
33041221 G
1 G
33041222 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACAGAGGTCATCCCCAGTCTAA
Found at i:33049476 original size:25 final size:25
Alignment explanation
Indices: 33049441--33049491 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
33049431 GTTGACTTAG
33049441 GCATACAGAGTTCATCCCAGTCTAA
1 GCATACAGAGTTCATCCCAGTCTAA
* *
33049466 GCATACGGAGTTCATTCCAGTCTAA
1 GCATACAGAGTTCATCCCAGTCTAA
33049491 G
1 G
33049492 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.25
Consensus pattern (25 bp):
GCATACAGAGTTCATCCCAGTCTAA
Found at i:33049837 original size:26 final size:26
Alignment explanation
Indices: 33049807--33049859 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
33049797 GTTGACTTAG
33049807 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
33049833 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
33049859 G
1 G
33049860 ATTGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:33050337 original size:26 final size:26
Alignment explanation
Indices: 33050307--33050362 Score: 96
Period size: 26 Copynumber: 2.2 Consensus size: 26
33050297 TGGGTTGGAT
33050307 TAAGCATACGGAGTTCATTCCACA-TC
1 TAAGCATACGGAGTTCATTCC-CAGTC
33050333 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
33050359 TAAG
1 TAAG
33050363 ATTTTGAGCC
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
25 2 0.07
26 27 0.93
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:33051571 original size:26 final size:26
Alignment explanation
Indices: 33051542--33051594 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33051532 GTTGGCTTAG
33051542 GCATACGGAGTTCA-TTCCATGTCTAA
1 GCATACGGAGTTCATTTCCA-GTCTAA
*
33051568 GCATATGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTTCCAGTCTAA
33051594 G
1 G
33051595 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTTCCAGTCTAA
Found at i:33052296 original size:26 final size:26
Alignment explanation
Indices: 33052266--33052318 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
33052256 GTTGACCTAG
*
33052266 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTATAA
* *
33052292 GCATACAGTGTTCATTCCCAGTATAA
1 GCATACAGAGTTCATCCCCAGTATAA
33052318 G
1 G
33052319 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTATAA
Found at i:33052648 original size:26 final size:26
Alignment explanation
Indices: 33052617--33052667 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
33052607 TTGACTTAGG
33052617 CATACGGAGTTCATCCCCAGTCTAAC
1 CATACGGAGTTCATCCCCAGTCTAAC
*
33052643 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATCCCCAGTCTAA
33052668 GATCAGATCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.31, G:0.16, T:0.25
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAGTCTAAC
Found at i:33053143 original size:159 final size:156
Alignment explanation
Indices: 33052789--33053440 Score: 456
Period size: 159 Copynumber: 4.1 Consensus size: 156
33052779 TACGCCCGTG
* * * * *** * **
33052789 TCATTCCATGTCTAAGCCCTAG-CCGGACTGAGGGTTGTGGCAGCGGGACCAACAGCACGTAAAA
1 TCATTCCATGTCTAAGCCC-AGACCAGATTGAGGGTTGCGGCAGCAGGATTGATAGCACGT-AGG
* * * * * * * *
33052853 GGGGATCGGGTCGATCCTCGACTT-ACGCACTATGCCTCTTCGGTCGGTTCAGTGCCCGCACGCT
64 GGGGATCGGGCCGATCCCCG-CTTGAC-CATTCTGCCTC-TCCGCCGGCTGAGTGCCCGCACGCT
* * *
33052917 CGTTTCGTGGGTTGACTTAGGCATACGGAGT
126 CGTTTCATGGGTTGGCTTAGGCATACAGAGT
* ** * *** * * *
33052948 TCATTCCCA-CTCTAAGATC-GAATC-GTACCAAAGGTTGCGGCAGCAGGATTGACAGCACGCAG
1 TCATT-CCATGTCTAAGCCCAG-ACCAG-ATTGAGGGTTGCGGCAGCAGGATTGATAGCACGTAG
* * * * *
33053010 GGGGTGATCGGGCTGATCCCCGACTTGGCCATTCTGCCTCTCCGCCTGGCTGAGCGCCTGCATGC
63 GGGG-GATCGGGCCGATCCCCG-CTTGACCATTCTGCCTCTCCGCC-GGCTGAGTGCCCGCACGC
33053075 TCGTTTCATGGGTTGGCTTAGGCATACAGAGT
125 TCGTTTCATGGGTTGGCTTAGGCATACAGAGT
* * * * * * * *
33053107 TCATTCCATGTCTAAGCCCTA-TCCGGATTGTGGGTTGTGGCAACGGGACTGGTAGCACGTAGAG
1 TCATTCCATGTCTAAGCCC-AGACCAGATTGAGGGTTGCGGCAGCAGGATTGATAGCACGTAG-G
* * * * * * * * *
33053171 GGGGATAGGGCCGATCCTCGGTTTACGCGTTATGCCTCTTCGGCCGGCTCAGTGCCCGTACGCTC
64 GGGGATCGGGCCGATCCCCGCTTGAC-CATTCTGCCTC-TCCGCCGGCTGAGTGCCCGCACGCTC
* * * *
33053236 TTTTCATGGGTTGACTTATGCATACGGCA-T
127 GTTTCATGGGTTGGCTTAGGCATACAG-AGT
** * * * *
33053266 TCATTCC-TAGTCTAAGATCAGACCAGATTGAGGGTTGCGGTAGCAAGATCGATAGCACATAGGG
1 TCATTCCAT-GTCTAAGCCCAGACCAGATTGAGGGTTGCGGCAGCAGGATTGATAGCACGTAGGG
* * **
33053330 GGGACCGGGCCGATCCCCGGCTTGCCCATTCTGCCTCTCCGACCGATTGAGTGCCCGCACGCTCG
65 GGGATCGGGCCGATCCCC-GCTTGACCATTCTGCCTCTCCG-CCGGCTGAGTGCCCGCACGCTCG
*
33053395 TTTCGTGGGTTGGCTTAGGCATACAGAGT
128 TTTCATGGGTTGGCTTAGGCATACAGAGT
*
33053424 TCATTTCATGTCTAAGC
1 TCATTCCATGTCTAAGC
33053441 ATATGGAGTT
Statistics
Matches: 372, Mismatches: 100, Indels: 43
0.72 0.19 0.08
Matches are distributed among these distances:
157 5 0.01
158 97 0.26
159 255 0.69
160 15 0.04
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.25
Consensus pattern (156 bp):
TCATTCCATGTCTAAGCCCAGACCAGATTGAGGGTTGCGGCAGCAGGATTGATAGCACGTAGGGG
GGATCGGGCCGATCCCCGCTTGACCATTCTGCCTCTCCGCCGGCTGAGTGCCCGCACGCTCGTTT
CATGGGTTGGCTTAGGCATACAGAGT
Found at i:33053190 original size:318 final size:317
Alignment explanation
Indices: 33052789--33053440 Score: 817
Period size: 318 Copynumber: 2.1 Consensus size: 317
33052779 TACGCCCGTG
*
33052789 TCATTCCATGTCTAAGCCCTAGCCGGACTGAGGGTTGTGGCAGCGGGACCAACAGCACGTAAAAG
1 TCATTCCATGTCTAAGCCCTAGCCGGACTGAGGGTTGTGGCAACGGGACCAACAGCACGTAAAAG
* * * *
33052854 GGGATCGGGTCGATCCTCGACTTACGCACTATGCCTCTTCGGTCGGTTCAGTGCCCGCACGCTCG
66 GGGATAGGGCCGATCCTCGACTTACGCACTATGCCTCTTCGGCCGGCTCAGTGCCCGCACGCTCG
* *
33052919 TTTCGTGGGTTGACTTAGGCATACGG-AGTTCATTCCCACTCTAAGATC-GAATC-GTACCAAAG
131 TTTCATGGGTTGACTTAGGCATACGGCA-TTCATTCCCACTCTAAGATCAG-ACCAG-ACCAAAG
* * * * * *
33052981 GTTGCGGCAGCAGGATTGACAGCACGCAGGGGGTGATCGGGCTGATCCCCGACTTGGCCATTCTG
193 GTTGCGGCAGCAAGATCGACAGCACACAGGGGG-GACCGGGCCGATCCCCGACTTGCCCATTCTG
* * *
33053046 CCTCTCCG-CCTGGCTGAGCGCCTGCATGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGT
257 CCTCTCCGACC-GACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGT
* * * **** * *
33053107 TCATTCCATGTCTAAGCCCTATCCGGATTGTGGGTTGTGGCAACGGGACTGGTAGCACGTAGAGG
1 TCATTCCATGTCTAAGCCCTAGCCGGACTGAGGGTTGTGGCAACGGGACCAACAGCACGTAAAAG
** ** * *
33053172 GGGATAGGGCCGATCCTCGGTTTACGCGTTATGCCTCTTCGGCCGGCTCAGTGCCCGTACGCTCT
66 GGGATAGGGCCGATCCTCGACTTACGCACTATGCCTCTTCGGCCGGCTCAGTGCCCGCACGCTCG
* * * *** *
33053237 TTTCATGGGTTGACTTATGCATACGGCATTCATTCCTAGTCTAAGATCAGACCAGATTGAGGGTT
131 TTTCATGGGTTGACTTAGGCATACGGCATTCATTCCCACTCTAAGATCAGACCAGACCAAAGGTT
* * * *
33053302 GCGGTAGCAAGATCGATAGCACATAGGGGGGACCGGGCCGATCCCCGGCTTGCCCATTCTGCCTC
196 GCGGCAGCAAGATCGACAGCACACAGGGGGGACCGGGCCGATCCCCGACTTGCCCATTCTGCCTC
* * *
33053367 TCCGACCGATTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGT
261 TCCGACCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGT
*
33053424 TCATTTCATGTCTAAGC
1 TCATTCCATGTCTAAGC
33053441 ATATGGAGTT
Statistics
Matches: 284, Mismatches: 46, Indels: 9
0.84 0.14 0.03
Matches are distributed among these distances:
317 95 0.33
318 186 0.65
319 3 0.01
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.25
Consensus pattern (317 bp):
TCATTCCATGTCTAAGCCCTAGCCGGACTGAGGGTTGTGGCAACGGGACCAACAGCACGTAAAAG
GGGATAGGGCCGATCCTCGACTTACGCACTATGCCTCTTCGGCCGGCTCAGTGCCCGCACGCTCG
TTTCATGGGTTGACTTAGGCATACGGCATTCATTCCCACTCTAAGATCAGACCAGACCAAAGGTT
GCGGCAGCAAGATCGACAGCACACAGGGGGGACCGGGCCGATCCCCGACTTGCCCATTCTGCCTC
TCCGACCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGT
Found at i:33053449 original size:26 final size:26
Alignment explanation
Indices: 33053420--33053471 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
33053410 TAGGCATACA
33053420 GAGTTCATT-TCATGTCTAAGCATATG
1 GAGTTCATTCTCA-GTCTAAGCATATG
33053446 GAGTTCATTCTCAGTCTAAGCATATG
1 GAGTTCATTCTCAGTCTAAGCATATG
33053472 CACATGCTGG
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.17, G:0.19, T:0.37
Consensus pattern (26 bp):
GAGTTCATTCTCAGTCTAAGCATATG
Found at i:33054150 original size:26 final size:26
Alignment explanation
Indices: 33054114--33054166 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
33054104 ATTGACTTAG
*
33054114 GCATATGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
33054140 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
33054166 G
1 G
33054167 ATCAAATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:33054645 original size:26 final size:26
Alignment explanation
Indices: 33054616--33054668 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
33054606 GTTGGCTTAG
**
33054616 GCATACGGGGTTCATTCCAAGTCTAA
1 GCATACGAAGTTCATTCCAAGTCTAA
*
33054642 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCAAGTCTAA
33054668 G
1 G
33054669 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCAAGTCTAA
Found at i:33055162 original size:26 final size:26
Alignment explanation
Indices: 33055122--33055176 Score: 69
Period size: 26 Copynumber: 2.1 Consensus size: 26
33055112 TGGGTTGGCT
33055122 TAAGCATACGAAGTTCA-TCCCTAGTC
1 TAAGCATACGAAGTTCATTCCC-AGTC
*
33055148 TAAGCATAC-AGAGTTTATTCCCAGTC
1 TAAGCATACGA-AGTTCATTCCCAGTC
33055174 TAA
1 TAA
33055177 TATCGGATCA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
25 1 0.04
26 21 0.81
27 4 0.15
ACGTcount: A:0.33, C:0.24, G:0.15, T:0.29
Consensus pattern (26 bp):
TAAGCATACGAAGTTCATTCCCAGTC
Found at i:33055323 original size:184 final size:184
Alignment explanation
Indices: 33054967--33055336 Score: 411
Period size: 184 Copynumber: 2.0 Consensus size: 184
33054957 GTTGATTTAT
* * * *
33054967 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGAGGCTGCAGGATCGATA
1 GCATACAGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGAGTTGAGGCAGCAAGATCGATA
* * * * * * *
33055032 GCACGTAGGGGGGACTGGGCTGATCCCCAGCTTGCGCATTCTGCCTCTTCGGTCGACTAAGCGCC
66 GCACGTAGGGGGGACCGAGCCGATCCCCAGCTTGAGCATTCTACCTCTCCGATCGACTAAGCGCC
* **
33055097 TGCATGCTCATTTCATGGGTTGGCTTAAGCATACGAAGTTCATCCC-TAGTCTAA
131 CGCAACCTCATTTCATGGGTTGGCTTAAGCATACGAAGTTCATCCCAT-GTCTAA
* * * * * * * * *
33055151 GCATACAGAGTTTATTCCCAGTCTAATATCGGATCAGACTGAGAGTTGTGGCAGTAAGATCGGTA
1 GCATACAGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGAGTTGAGGCAGCAAGATCGATA
* * * *
33055216 GCATGTAGTGGGGACCGAGCCGATCCCCAGCTTGAGCATTCTACCTCTCCGATCGGCTAAGTGCC
66 GCACGTAGGGGGGACCGAGCCGATCCCCAGCTTGAGCATTCTACCTCTCCGATCGACTAAGCGCC
* * * * * *
33055281 CGCACACCT-GTTTTATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
131 CGCA-ACCTCATTTCATGGGTTGGCTTAAGCATACGAAGTTCATCCCATGTCTAA
33055335 GC
1 GC
33055337 CCCAGCCAAA
Statistics
Matches: 151, Mismatches: 33, Indels: 4
0.80 0.18 0.02
Matches are distributed among these distances:
184 148 0.98
185 3 0.02
ACGTcount: A:0.22, C:0.25, G:0.27, T:0.26
Consensus pattern (184 bp):
GCATACAGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGAGTTGAGGCAGCAAGATCGATA
GCACGTAGGGGGGACCGAGCCGATCCCCAGCTTGAGCATTCTACCTCTCCGATCGACTAAGCGCC
CGCAACCTCATTTCATGGGTTGGCTTAAGCATACGAAGTTCATCCCATGTCTAA
Found at i:33055661 original size:26 final size:26
Alignment explanation
Indices: 33055625--33055677 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
33055615 GTTAGCTTAG
33055625 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATATGGAGTTCATTCCCA-GTCTAA
33055651 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
33055677 G
1 G
33055678 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:33056699 original size:158 final size:159
Alignment explanation
Indices: 33056528--33056873 Score: 398
Period size: 158 Copynumber: 2.2 Consensus size: 159
33056518 TGGGTTGGCA
* * * **
33056528 TAGGCATAGGGAGTTCATTCCATGTCTAAGGCCCAG-CC-GA-ATTGAGGGTCATGGCAGCGGGA
1 TAGGCATACGGAGTTCATTCCATGTCTAAGGACCAGACCAGACA--GAGGGTCATGACAGCAAGA
* * * * *
33056590 TAGGTAGCACGCAAGGAGGAC-CGTGTCGATTCTCGACTTATGCATTATGCCTCTCTGATCGGCT
64 TAGATAGCACGCAAGGAGGACTAG-GTCGATCCTCGACTTATGCATTATGCCTCTCCGATCGACT
* **
33056654 CAGCGCCCGTATGCTCATTTTGTGGGTTAACT
128 CAGCGCCCGCACACTCATTTTGTGGGTTAACT
* ** *
33056686 TAGGCATACGGAGTTCATTCCCA-GTCTAA-GATCAGACCAGACAGAGGGTTGTGATAGCAAGAT
1 TAGGCATACGGAGTTCATT-CCATGTCTAAGGACCAGACCAGACAGAGGGTCATGACAGCAAGAT
* * * * * *
33056749 TGATAGCACGCAGGGGGGACTAGGTCGATCCTCGGCTTATGCATTCTGCCTCTCCGATCGACTGA
65 AGATAGCACGCAAGGAGGACTAGGTCGATCCTCGACTTATGCATTATGCCTCTCCGATCGACTCA
*
33056814 GCGCCCGCACACTCATTTTGTGGGTTGACT
130 GCGCCCGCACACTCATTTTGTGGGTTAACT
33056844 TAGGCATACGGAGTTCATTCCATGTCTAAG
1 TAGGCATACGGAGTTCATTCCATGTCTAAG
33056874 CATATGGAGT
Statistics
Matches: 157, Mismatches: 24, Indels: 13
0.81 0.12 0.07
Matches are distributed among these distances:
157 7 0.04
158 143 0.91
159 6 0.04
160 1 0.01
ACGTcount: A:0.22, C:0.24, G:0.28, T:0.26
Consensus pattern (159 bp):
TAGGCATACGGAGTTCATTCCATGTCTAAGGACCAGACCAGACAGAGGGTCATGACAGCAAGATA
GATAGCACGCAAGGAGGACTAGGTCGATCCTCGACTTATGCATTATGCCTCTCCGATCGACTCAG
CGCCCGCACACTCATTTTGTGGGTTAACT
Found at i:33056883 original size:26 final size:26
Alignment explanation
Indices: 33056847--33056899 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33056837 GTTGACTTAG
33056847 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
33056873 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
33056899 G
1 G
33056900 ATCGGACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:33057263 original size:26 final size:26
Alignment explanation
Indices: 33057213--33057265 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
33057203 GTTGACTTAG
*
33057213 GCATACAGAGTTCATCCCTAGTCTAA
1 GCATACAGAGTTCATCCCTAATCTAA
*
33057239 GCATACGGAGTTCATTCCC-AATCTAA
1 GCATACAGAGTTCA-TCCCTAATCTAA
33057265 G
1 G
33057266 ATCAGACCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCTAATCTAA
Found at i:33058231 original size:158 final size:158
Alignment explanation
Indices: 33057944--33058280 Score: 374
Period size: 158 Copynumber: 2.1 Consensus size: 158
33057934 TAAGCATATA
* * * *
33057944 GAGTTCATTCCTAGTCTAAGATCAGACCGGACTGAGGGTTACGGTAGTAGGATCGACAGCACATA
1 GAGTTCATTCCTAGTCTAAGACCAGACCGGACTGAGGGTTACGGCAGTAGGACCGACAGCACACA
* * ** **
33058009 GAGGGGACCGAGCCGATCCCCGGCTTACGTATTCTGCCTCTCCGGCCAGTCGAGTGCCTGCACGC
66 GAGGGGACCGAGCCAATCCCCGGCTTACGTATTATGCCTCTCCGGCCAGTCGAGCACCCACACGC
* *
33058074 TCATTTCATGGGTTGGCTTAGGCATACG
131 TCATTTCATGGGCTGACTTAGGCATACG
* * ** * *
33058102 GAGTTCATTCCTTGTCTAAGCCCCAG-CCGGACTGAGGGTTGTGGCAGTGGGACCG-GAGCACAC
1 GAGTTCATTCCTAGTCTAAG-ACCAGACCGGACTGAGGGTTACGGCAGTAGGACCGACAGCACAC
* ** *
33058165 AGAAGGGGACCGAGCCAATCCCTGGCTTACGTATTATGCCTCTTTGGCCGGCTC-AGCACCCACA
65 AG-AGGGGACCGAGCCAATCCCCGGCTTACGTATTATGCCTCTCCGGCCAG-TCGAGCACCCACA
* * * *
33058229 CGCTCATTTCGTGGGCTGACTTATGTATCCG
128 CGCTCATTTCATGGGCTGACTTAGGCATACG
* *
33058260 GAGTTCATTTCGAGTCTAAGA
1 GAGTTCATTCCTAGTCTAAGA
33058281 TCGGACCAGA
Statistics
Matches: 146, Mismatches: 30, Indels: 7
0.80 0.16 0.04
Matches are distributed among these distances:
157 8 0.05
158 133 0.91
159 5 0.03
ACGTcount: A:0.20, C:0.27, G:0.28, T:0.24
Consensus pattern (158 bp):
GAGTTCATTCCTAGTCTAAGACCAGACCGGACTGAGGGTTACGGCAGTAGGACCGACAGCACACA
GAGGGGACCGAGCCAATCCCCGGCTTACGTATTATGCCTCTCCGGCCAGTCGAGCACCCACACGC
TCATTTCATGGGCTGACTTAGGCATACG
Found at i:33059158 original size:26 final size:26
Alignment explanation
Indices: 33059118--33059170 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
33059108 GTTAACTTGG
*
33059118 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGATCATCCCCAGTCTAA
*
33059144 GCATACGGAGATCATTCCCAGTCTAA
1 GCATACGGAGATCATCCCCAGTCTAA
33059170 G
1 G
33059171 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACGGAGATCATCCCCAGTCTAA
Found at i:33059646 original size:26 final size:26
Alignment explanation
Indices: 33059616--33059668 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33059606 GTTGGCTTAG
33059616 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
33059642 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
33059668 G
1 G
33059669 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:33059950 original size:13 final size:13
Alignment explanation
Indices: 33059932--33059965 Score: 68
Period size: 13 Copynumber: 2.6 Consensus size: 13
33059922 TGTGCATTAT
33059932 GCCTCTCCAACTA
1 GCCTCTCCAACTA
33059945 GCCTCTCCAACTA
1 GCCTCTCCAACTA
33059958 GCCTCTCC
1 GCCTCTCC
33059966 GGCCGACTGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.18, C:0.50, G:0.09, T:0.24
Consensus pattern (13 bp):
GCCTCTCCAACTA
Found at i:33060039 original size:26 final size:26
Alignment explanation
Indices: 33060009--33060061 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
33059999 GTTGACTTAG
*
33060009 GCATACGGAGTTCATCCCCAGTTTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
33060035 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
33060061 G
1 G
33060062 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:33061570 original size:26 final size:26
Alignment explanation
Indices: 33061534--33061586 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
33061524 GTTGCCTTAG
33061534 GCATACGGAGTTCATTCCAT-GTCTAA
1 GCATACGGAGTTCATT-CATAGTCTAA
33061560 GCATACGGAGTTCATTCATAGTCTAA
1 GCATACGGAGTTCATTCATAGTCTAA
33061586 G
1 G
33061587 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 3 0.12
26 23 0.88
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCATAGTCTAA
Found at i:33063117 original size:26 final size:26
Alignment explanation
Indices: 33063065--33063117 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
33063055 GTTGGCTTAG
* *
33063065 GCATACGGAGTTCATTCCATGTTTAA
1 GCATACAGAGTTCATTCCATGTCTAA
33063091 GCATACAGAGTTCATTCCCA-GTCTAA
1 GCATACAGAGTTCATT-CCATGTCTAA
33063117 G
1 G
33063118 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGTCTAA
Found at i:33063562 original size:258 final size:258
Alignment explanation
Indices: 33063069--33063570 Score: 604
Period size: 258 Copynumber: 1.9 Consensus size: 258
33063059 GCTTAGGCAT
* * * *
33063069 ACGGAGTTCATTCCATGTTTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAG
1 ACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGAACCAGACCAAA
* * ** *
33063134 GGTTGCGACAGCAGGACCAGCAGCAGGATAGACAGCACCCAGAGGGGACCTAGCCGGTCCCCGAC
66 GGTTGCGACAGCAGGACCAACAGCAGGATAGACAGCACCCAGAGGGGACCGAGCCAATCCCAGAC
* *
33063199 TTGCGCATTCCGCCTCTTCGGTCGGCTGAGCGCCTACACTCCCGTTTCATGGGTTGGCTTAGGAA
131 TTGCGCATTCCGCCTCTTCGATCGGCTGAGCCCCTACACTCCCGTTTCATGGGTTGGCTTAGGAA
* * *
33063264 TAGGGAGTTCATTCCATGTCTAAGCCCAGTCGGACCGAGGGTTGTGGCAACGGAACCGGCAGC
196 TACGAAGTTCATTCCATGTCTAAGCCCAGTCGGACCGAGGGTTCTGGCAACGGAACCGGCAGC
* *
33063327 ACGGAGTTCATTCCTTGTCTAAGCATAC-GAAGTTCATTCCCAGTCTAAGATCGAACCGGACCAA
1 ACGGAGTTCATTCCATGTCTAAGCATACAG-AGTTCATTCCCAGTCTAAGATCGAACCAGACCAA
* * * * ** *
33063391 AGGTTGTGGCAGCAGGACCAATAGCAGGATCGACAGCACGTAG-GAGGGACCGGGCCAATCCTCA
65 AGGTTGCGACAGCAGGACCAACAGCAGGATAGACAGCACCCAGAG-GGGACCGAGCCAATCC-CA
* * * * ** *
33063455 G-CTTGTGCATTCTGCCTC-TCGATCGGTTGAGCACCCGTAC-GT-TTGTTTCATGGGTTTGCTT
128 GACTTGCGCATTCCGCCTCTTCGATCGGCTGAGC-CCC-TACACTCCCGTTTCATGGGTTGGCTT
* *
33063516 AGGCATACGAAGTTCATTCCATGTCTAAGCCCCAG-CAGGGCCGAGGGTTCTGGCA
191 AGGAATACGAAGTTCATTCCATGTCTAAG-CCCAGTC-GGACCGAGGGTTCTGGCA
33063571 GCAGGACCGG
Statistics
Matches: 205, Mismatches: 32, Indels: 14
0.82 0.13 0.06
Matches are distributed among these distances:
257 57 0.28
258 143 0.70
259 5 0.02
ACGTcount: A:0.23, C:0.27, G:0.28, T:0.22
Consensus pattern (258 bp):
ACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGAACCAGACCAAA
GGTTGCGACAGCAGGACCAACAGCAGGATAGACAGCACCCAGAGGGGACCGAGCCAATCCCAGAC
TTGCGCATTCCGCCTCTTCGATCGGCTGAGCCCCTACACTCCCGTTTCATGGGTTGGCTTAGGAA
TACGAAGTTCATTCCATGTCTAAGCCCAGTCGGACCGAGGGTTCTGGCAACGGAACCGGCAGC
Found at i:33063731 original size:26 final size:26
Alignment explanation
Indices: 33063702--33063754 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
33063692 GTTGACTTAG
* *
33063702 GCATACGGAGTTCATCCCCATTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
33063728 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
33063754 G
1 G
33063755 ATCAAACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:33064093 original size:25 final size:26
Alignment explanation
Indices: 33064044--33064095 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
33064034 GTTGACTTAG
* *
33064044 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATAAGGAGTTCATTTCCAATCTAA
33064070 GCATAAGGAGTTC-TTTCCAATCTAA
1 GCATAAGGAGTTCATTTCCAATCTAA
33064095 G
1 G
33064096 ATCGGACACG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 12 0.50
26 12 0.50
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (26 bp):
GCATAAGGAGTTCATTTCCAATCTAA
Found at i:33064280 original size:184 final size:191
Alignment explanation
Indices: 33064033--33064450 Score: 453
Period size: 196 Copynumber: 2.2 Consensus size: 191
33064023 TCAATTCGTG
* ** * *
33064033 GGTTGACTTAGGCATACGGAGTTCATTTCCA-GTCTAAGCATAAGGAGTTCTTTCCAATCTAAGA
1 GGTTGGCTTAGGCATACAAAGTTCA-TTCCATGTCTAAGCATAAGAAGTTCTTCCCAATCTAAGA
*
33064097 TCGGA-CACGACCGAGGG-T-T-A-C-GG-CAGCAG-G-ATCGACAGCACATAAGGGGG-ATCGG
65 TCGGACCA-GACCGAGGGTTGTAAGCAGGACAGCAGAGAATCGACAGCACAT-AGGGGGCACCGG
* * * * *
33064152 GCCGATCCCCAACTTGCGTATTCGACCTCTTCGACCGGCTGAGCGCCCACAGGCTCGTTTCGTA
128 GCCGATCCCCAACTTGCGCATGCGACCTCTCCAACCGGCTGAGCGCCCACAGGCTCGTTTCATA
* * * * *
33064216 GGTTGGCTTAGTCATATAAAGTTCATTCCATGTCTATGCATACGAAGTTCATTCCCAGTCTAAGA
1 GGTTGGCTTAGGCATACAAAGTTCATTCCATGTCTAAGCATAAGAAGTTC-TTCCCAATCTAAGA
*
33064281 TCGGACCAGACCGAGGGTTGTGACAGCAGGACCAGCAGCAGAATCGACAGCACGTAGGGGGCACC
65 TCGGACCAGACCGAGGGTTGT-A-AGCAGGA-CAGCAG-AGAATCGACAGCACATAGGGGGCACC
* * * * * * *
33064346 GGGTCGATCCCCAGCTTGTGCATGCTACCTCTCCAACCGGCTGAGCGCCCGCATGCTTGTTTCAT
126 GGGCCGATCCCCAACTTGCGCATGCGACCTCTCCAACCGGCTGAGCGCCCACAGGCTCGTTTCAT
*
33064411 G
191 A
*
33064412 GGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGC
1 GGTTGGCTTAGGCATACAAAGTTCATTCCATGTCTAAGC
33064451 CCCAGCCAGA
Statistics
Matches: 190, Mismatches: 29, Indels: 19
0.80 0.12 0.08
Matches are distributed among these distances:
182 5 0.03
183 36 0.19
184 26 0.14
185 3 0.02
186 1 0.01
189 1 0.01
190 1 0.01
191 2 0.01
193 6 0.03
195 7 0.04
196 102 0.54
ACGTcount: A:0.23, C:0.27, G:0.27, T:0.23
Consensus pattern (191 bp):
GGTTGGCTTAGGCATACAAAGTTCATTCCATGTCTAAGCATAAGAAGTTCTTCCCAATCTAAGAT
CGGACCAGACCGAGGGTTGTAAGCAGGACAGCAGAGAATCGACAGCACATAGGGGGCACCGGGCC
GATCCCCAACTTGCGCATGCGACCTCTCCAACCGGCTGAGCGCCCACAGGCTCGTTTCATA
Found at i:33064644 original size:26 final size:26
Alignment explanation
Indices: 33064607--33064659 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33064597 GTTGACTTAG
33064607 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
33064633 GCATAC-AGAGTTCATTCCCAGTCTAA
1 GCATACGA-AGTTCATCCCCAGTCTAA
33064659 G
1 G
33064660 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:33065138 original size:26 final size:26
Alignment explanation
Indices: 33065108--33065160 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
33065098 GTTGGCTTAG
33065108 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
33065134 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
33065160 G
1 G
33065161 ATCATACCAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:33066889 original size:26 final size:26
Alignment explanation
Indices: 33066859--33066911 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33066849 ATTGGCTTAG
33066859 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
33066885 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
33066911 G
1 G
33066912 ATCAGACCCG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:33067640 original size:159 final size:159
Alignment explanation
Indices: 33067351--33067777 Score: 400
Period size: 159 Copynumber: 2.7 Consensus size: 159
33067341 AGCAGGCATA
* * * * *
33067351 GGGGACTGGGTCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGT-GAGCTGAGCGCCC-ACACG-
1 GGGGACTGGGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGGTCG-GCTCAGCGCCCGA-ACGC
* * * * * * *
33067413 TCCATTTCGTGGGTTGGCTTGGGCATAAGGAGTTCATT-CCATGTCTGAGCCCCAGTCGGACCGA
64 T-CATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCATGTCTAAGACCCAATCGAACCGA
* ** *
33067477 GGGTTGTGGTAGTGGGACCGATAGCACACAAAG
128 GGGTTGCGACAGTAGGACCGATAGCACAC-AAG
* * *
33067510 GGGGACTGGACCGATCCCCAGCTTGCGCATTATGCCTCTTCGGTCGGCTCAACGCCCGAACGCTC
1 GGGGACTGGGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGGTCGGCTCAGCGCCCGAACGCTC
* * * *
33067575 ATTTCATGGGTTGACTTATGCATACGGAGTTCATTCCCA-GTCTAAGATCGAATCGAACCGAGGG
66 ATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCATGTCTAAGACCCAATCGAACCGAGGG
** * *
33067639 TTGCGACAGTAGGATTGATAGCACGCAGG
131 TTGCGACAGTAGGACCGATAGCACACAAG
* * * * * * * * *
33067668 GGGGACTGGGCCGAT-CCCTGACTTGCGCATTTTGCATCCCCGATCGGCTTAGCACCCGCATGCT
1 GGGGACTGGGCCGATCCCCAG-CTTGCGCATTATGCCTCTCCGGTCGGCTCAGCGCCCGAACGCT
* ** *
33067732 CGTTTCATTTGTTGGCTTAGGCATACGGAGTTCATT-CCATCTCTAA
65 CATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCATGTCTAA
33067778 ACATAAGGAG
Statistics
Matches: 217, Mismatches: 45, Indels: 13
0.79 0.16 0.05
Matches are distributed among these distances:
157 7 0.03
158 85 0.39
159 119 0.55
160 6 0.03
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.25
Consensus pattern (159 bp):
GGGGACTGGGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGGTCGGCTCAGCGCCCGAACGCTC
ATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCATGTCTAAGACCCAATCGAACCGAGGG
TTGCGACAGTAGGACCGATAGCACACAAG
Found at i:33069011 original size:26 final size:26
Alignment explanation
Indices: 33068975--33069027 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
33068965 GTTGGCTTAG
33068975 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
33069001 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
33069027 G
1 G
33069028 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:33069297 original size:171 final size:171
Alignment explanation
Indices: 33069001--33069369 Score: 397
Period size: 171 Copynumber: 2.2 Consensus size: 171
33068991 CCATGTCTAA
* * *
33069001 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGACAGCAGGAATAGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGACCAGACCGGACCGAGGGTTGCGACAGCAGGAACAGTA
* * *
33069066 ACAGGATCGACAGCACGCAGGGAGGGATCGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGA
66 ACAGGATCGACAGCACGCAGAGAGGGATCGGGTCGATCCCCAGCTTACGCATTATGCCTCTCCGA
*
33069131 CTGGCTGAGCACCCACACACTCATTTCATGGGTTCACTTAG
131 CCGGCTGAGCACCCACACACTCATTTCATGGGTTCACTTAG
* * * * * *
33069172 GCATACGGAGTTCATT-CCATGTCTAAGCCCCAG-TCGGACCGAGGGTTGTGGCAGCAGGACCGG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ACCAGACCGGACCGAGGGTTGCGACAGCAGGAACAG
* *
33069235 TAACGGGATCGACAGCACGCAGA-AGGGGATCGGG-CTGATCCTC-GACTTACGCATTATGCCTC
64 TAACAGGATCGACAGCACGCAGAGA-GGGATCGGGTC-GATCCCCAG-CTTACGCATTATGCCTC
* * * ** * * * * *
33069297 TTCGGCCGGTTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
126 TCCGACCGGCTGAGCACCCACACACTCATTTCATGGGTTCACTTAG
** * *
33069343 GCATACATAGGTCATCCCCAGTCTAAG
1 GCATACGGAGTTCATTCCCAGTCTAAG
33069370 CATACGGAGT
Statistics
Matches: 163, Mismatches: 29, Indels: 12
0.80 0.14 0.06
Matches are distributed among these distances:
170 6 0.04
171 151 0.93
172 6 0.04
ACGTcount: A:0.22, C:0.28, G:0.29, T:0.21
Consensus pattern (171 bp):
GCATACGGAGTTCATTCCCAGTCTAAGACCAGACCGGACCGAGGGTTGCGACAGCAGGAACAGTA
ACAGGATCGACAGCACGCAGAGAGGGATCGGGTCGATCCCCAGCTTACGCATTATGCCTCTCCGA
CCGGCTGAGCACCCACACACTCATTTCATGGGTTCACTTAG
Found at i:33070226 original size:26 final size:26
Alignment explanation
Indices: 33070193--33070248 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
33070183 TGGGTTGACT
33070193 TAAGCATACGGAGTTCATCCCCAGTC
1 TAAGCATACGGAGTTCATCCCCAGTC
* *
33070219 TAAGCATACGGTGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATCCCCAGTC
33070245 TAAG
1 TAAG
33070249 ATCAGATCGG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.27
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATCCCCAGTC
Found at i:33070670 original size:157 final size:159
Alignment explanation
Indices: 33070304--33070705 Score: 423
Period size: 157 Copynumber: 2.5 Consensus size: 159
33070294 CCCCGACTTA
* *
33070304 CGCATTCTGCCTCTCCGACTGGCTGAGCGCCCGCACACCCGTTTCATGGGTTGGCTTAGGCATAG
1 CGCATTCTGCCTCTCCGACTGGCTGAGCGCCCGCACACTCGTTTCATGGGTTGGCTTAGGCATAC
** * * * * * * *** **
33070369 GGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGGAGGATCGGTAACACGC
66 AAAATTCATCCCATGTCTAAGACCAAACCAGACCGAGGGTTGCAACAGGAGGATCGACAACACGC
* * *
33070434 AGAGGGAGACCGGGCTGATCCCCGGCTTG
131 AAAGGGAGACCGGGCCGATCCCCAGCTTG
* * * * * * * * * * * *
33070463 CACATTATGCCTCGT-CGGCCGGCTCAGTGCTCTCACACTCATTTCGTGGGTTGACTTATGCATA
1 CGCATTCTGCCTC-TCCGACTGGCTGAGCGCCCGCACACTCGTTTCATGGGTTGGCTTAGGCATA
* * * *
33070527 CAAAATTCATCCCA-GTCTAAGATCAAACCAGATCGAGGGTTGCAACAGTAGGATCGACAACATG
65 CAAAATTCATCCCATGTCTAAGACCAAACCAGACCGAGGGTTGCAACAGGAGGATCGACAACACG
33070591 CAAAGGG-GACCGGGCCGATCCCCAGCTTG
130 CAAAGGGAGACCGGGCCGATCCCCAGCTTG
*
33070620 CGCATTCTGCCTCTCCGACTGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAC
1 CGCATTCTGCCTCTCCGACTGGCTGAGCGCCCGCACACTCGTTTCATGGGTTGGCTTAGGCATAC
** * *
33070685 GGAGTTCATTCCATGTCTAAG
66 AAAATTCATCCCATGTCTAAG
33070706 GCCCAACCTA
Statistics
Matches: 189, Mismatches: 51, Indels: 7
0.77 0.21 0.03
Matches are distributed among these distances:
156 1 0.01
157 79 0.42
158 50 0.26
159 58 0.31
160 1 0.01
ACGTcount: A:0.20, C:0.29, G:0.28, T:0.23
Consensus pattern (159 bp):
CGCATTCTGCCTCTCCGACTGGCTGAGCGCCCGCACACTCGTTTCATGGGTTGGCTTAGGCATAC
AAAATTCATCCCATGTCTAAGACCAAACCAGACCGAGGGTTGCAACAGGAGGATCGACAACACGC
AAAGGGAGACCGGGCCGATCCCCAGCTTG
Found at i:33072991 original size:26 final size:26
Alignment explanation
Indices: 33072955--33073005 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
33072945 TGACTTAGGC
*
33072955 ATACGGAGTTCA-TCCCTAGTCTAAGT
1 ATACAGAGTTCATTCCC-AGTCTAAGT
33072981 ATACAGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
33073006 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGT
Found at i:33074200 original size:26 final size:26
Alignment explanation
Indices: 33074171--33074223 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
33074161 GTTGACTTAG
*
33074171 GCATAC-AGAGTTCATCCCCAGTCTAA
1 GCATACGA-AGTTAATCCCCAGTCTAA
*
33074197 GCATACGAAGTTAATTCCCAGTCTAA
1 GCATACGAAGTTAATCCCCAGTCTAA
33074223 G
1 G
33074224 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTAATCCCCAGTCTAA
Found at i:33074558 original size:159 final size:157
Alignment explanation
Indices: 33074197--33074629 Score: 377
Period size: 159 Copynumber: 2.7 Consensus size: 157
33074187 CCCAGTCTAA
* * * * * * *
33074197 GCATACGAAGTTAATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGTAGCAGGATCGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGTGGCAGCAGGAACGGTA
* * * * * *
33074262 GCACGCAGGGGGATCGAGTCGATCCTCGGCTTACGCATTCTGGCTCTCCGGCCAACTGAGCACCC
66 GCACGCAGGGGGACCGAGCCGATCCTCGGCTTACGCATTCTGCCTCTCCGACCAACTCAACACCC
* **
33074327 GTACGCCCGTTTTGTGGGTTGGCTTAG
131 GTACGCCCGTTTCGTGGGTTAACTTAG
* * ** *
33074354 GCATAGGGAGTTCATT-CCATGTCTAAG-CCCCAGCCAGATCGAGGGTTGTGGCAGC-GGAACTG
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGA-CCGGATCGAGGGTTGTGGCAGCAGGAAC-G
* * * * * * **
33074416 GTAGCATGCAGAGGGGAACCGAGCCGATCCTCGGCTTGCGGATTTTGCCTCTTCGATCGGCTCAA
63 GTAGCACGCAG-GGGG-ACCGAGCCGATCCTCGGCTTACGCATTCTGCCTCTCCGACCAACTCAA
* * *
33074481 CACCCGTATGCTCGTTTCGTGGGTTAACTTAT
126 CACCCGTACGCCCGTTTCGTGGGTTAACTTAG
* * * * * ***
33074513 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGATCAAGGGTTGTAGTAGCAGGATCCACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGTGGCAGCAGGAACGGTA
* * * * * *
33074578 GCACGTAGGGGGAACCGGGCCAATCCCCAGCTTGCGCATTCTGCCTCTCCGA
66 GCACGCAGGGGG-ACCGAGCCGATCCTCGGCTTACGCATTCTGCCTCTCCGA
33074630 TTGACTGAGC
Statistics
Matches: 214, Mismatches: 54, Indels: 15
0.76 0.19 0.05
Matches are distributed among these distances:
156 9 0.04
157 48 0.22
158 41 0.19
159 108 0.50
160 8 0.04
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGTGGCAGCAGGAACGGTA
GCACGCAGGGGGACCGAGCCGATCCTCGGCTTACGCATTCTGCCTCTCCGACCAACTCAACACCC
GTACGCCCGTTTCGTGGGTTAACTTAG
Found at i:33081189 original size:26 final size:26
Alignment explanation
Indices: 33081153--33081205 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33081143 GTTGACTTAG
33081153 GCATACAGAGTTCA-TCCTCAGTCTAA
1 GCATACAGAGTTCATTCC-CAGTCTAA
*
33081179 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
33081205 G
1 G
33081206 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:33081550 original size:26 final size:26
Alignment explanation
Indices: 33081520--33081572 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
33081510 GTTGACTTAG
33081520 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
33081546 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
33081572 G
1 G
33081573 ATAAGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:33081902 original size:158 final size:158
Alignment explanation
Indices: 33081546--33081929 Score: 400
Period size: 158 Copynumber: 2.4 Consensus size: 158
33081536 CCCAGTCTAA
* * *
33081546 GCATATGGAGTTCATTCCCAGTCTAAGATAAGACCGAACCGAGGGTTGCGACAGCAGGATCGACA
1 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGACAGCAGGATCGACA
* * * ** * * * *
33081611 GCACGCAGGGGGGATCGGGTCGATCTCCGGCTTGCGTATTCTGCCTCTCTAACCAGCTGAGCACC
66 GCACACAGAGAGGATCGGACCGATCTCCGGCTTGCGCATTATGCCTCTCTAACCAGCTCAACACC
* *
33081676 CGTACGCCCATTTCATGGGTTGGCTTAG
131 CGCACGCCCATTTCATGGGTTGACTTAG
* ** * * *
33081704 GCATAGGGAGTTCATT-CCACGTCTAAGCCCTAG-CCAGACCGAGGGTTGTTG-CAGCGGGACCG
1 GCATATGGAGTTCATTCCCA-GTCTAAGATC-AGACCGGACCGAGGGTTG-TGACAGCAGGATCG
* ** *
33081766 ACAGCACACAGAGAGGATCGGACCGATC-CTTGGCTTGCGCATTATGCCTCT-TCGGCCGGCTCA
63 ACAGCACACAGAGAGGATCGGACCGATCTC-CGGCTTGCGCATTATGCCTCTCT-AACCAGCTCA
* * * *
33081829 ACACCTGCACGCTCGTTTCATGGGTTGACTTAT
126 ACACCCGCACGCCCATTTCATGGGTTGACTTAG
* * * *
33081862 GCATATGGAGTTCATTCCCAGTATAAGATCGGACTGGACCGAAGGTTGTGACAGCAGGATCGACA
1 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGACAGCAGGATCGACA
33081927 GCA
66 GCA
33081930 TGTCAGGGGG
Statistics
Matches: 180, Mismatches: 38, Indels: 16
0.77 0.16 0.07
Matches are distributed among these distances:
157 8 0.04
158 166 0.92
159 6 0.03
ACGTcount: A:0.22, C:0.27, G:0.29, T:0.22
Consensus pattern (158 bp):
GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGACAGCAGGATCGACA
GCACACAGAGAGGATCGGACCGATCTCCGGCTTGCGCATTATGCCTCTCTAACCAGCTCAACACC
CGCACGCCCATTTCATGGGTTGACTTAG
Found at i:33082048 original size:26 final size:26
Alignment explanation
Indices: 33082018--33082073 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
33082008 TGGGTTGGCT
*
33082018 TAAGCATACGGAGTTCATT-CCATGTC
1 TAAGCATACGAAGTTCATTCCCA-GTC
33082044 TAAGCATACGAAGTTCATTCCCAGTC
1 TAAGCATACGAAGTTCATTCCCAGTC
33082070 TAAG
1 TAAG
33082074 ATTTTGAGCC
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 25 0.89
27 3 0.11
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.29
Consensus pattern (26 bp):
TAAGCATACGAAGTTCATTCCCAGTC
Found at i:33082780 original size:26 final size:26
Alignment explanation
Indices: 33082742--33082793 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
33082732 TTGACTTAGT
33082742 CATACGGACTTCATCCCCAGTCTAAG
1 CATACGGACTTCATCCCCAGTCTAAG
* * *
33082768 CATATGGAGTTCATTCCCAGTCTAAG
1 CATACGGACTTCATCCCCAGTCTAAG
33082794 TTTGGATTGG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.29, G:0.17, T:0.27
Consensus pattern (26 bp):
CATACGGACTTCATCCCCAGTCTAAG
Found at i:33083143 original size:26 final size:26
Alignment explanation
Indices: 33083095--33083147 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33083085 GTTGACTTAG
*
33083095 GCATACGGAGTTCATCACTAGTCTAA
1 GCATACGGAGTTCATCACCAGTCTAA
33083121 GCATACGGAGTTCATTC-CCAGTCTAA
1 GCATACGGAGTTCA-TCACCAGTCTAA
33083147 G
1 G
33083148 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCACCAGTCTAA
Found at i:33083430 original size:159 final size:158
Alignment explanation
Indices: 33083178--33083550 Score: 380
Period size: 159 Copynumber: 2.4 Consensus size: 158
33083168 GCGGCAATAG
* * * * * *
33083178 GATCGACAGCACGCAGGGGGGACCGAGTCGAT-CCTCGGCTTGCGCATTCTACCTC-TCAATCCG
1 GATCGACAGCACACAGGGGGGACAGGGTCGATCCCT-GGCTTGCGCATTATGCCTCTTCAA-CCA
* * * * * * *
33083241 GTTGAGCGCCCGC-TCACCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCACT-CCATGTCTA
64 GCTCAGTGCCCGCAT-GCTCATTTCATGGGTTGACTTAGGCATAAGGAGTTCACTCCCA-GTCTA
* *
33083304 AGCCCCAACCAGA-CTGAGGGTTGTGGTAGCAA
127 AGACCCAACCAGATC-GAGGGTTATGGTAGCAA
* *
33083336 GATCGACAGCACATAGAGGGGGACAGGG-CTGATCCCTGGCTTGCGCGTTATGCCTCTTCAACCA
1 GATCGACAGCACACAG-GGGGGACAGGGTC-GATCCCTGGCTTGCGCATTATGCCTCTTCAACCA
* *
33083400 GCTCAGTGCCCGCATGCTCATTTCATGGGTTGACTTATGCATAAGGAGTTCATTCCCAGTCTAAG
64 GCTCAGTGCCCGCATGCTCATTTCATGGGTTGACTTAGGCATAAGGAGTTCACTCCCAGTCTAAG
**** *
33083465 ATTGGACCGGATCGAGGGTTATGGTAGCAA
129 ACCCAACCAGATCGAGGGTTATGGTAGCAA
** * * *
33083495 GATCGACAGCATGCAGGGGGGACCGGGTCGATCCTTGGCTTGCGCATTCTGCCTCT
1 GATCGACAGCACACAGGGGGGACAGGGTCGATCCCTGGCTTGCGCATTATGCCTCT
33083551 CTGGCCGATT
Statistics
Matches: 176, Mismatches: 31, Indels: 16
0.79 0.14 0.07
Matches are distributed among these distances:
158 49 0.28
159 115 0.65
160 12 0.07
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (158 bp):
GATCGACAGCACACAGGGGGGACAGGGTCGATCCCTGGCTTGCGCATTATGCCTCTTCAACCAGC
TCAGTGCCCGCATGCTCATTTCATGGGTTGACTTAGGCATAAGGAGTTCACTCCCAGTCTAAGAC
CCAACCAGATCGAGGGTTATGGTAGCAA
Found at i:33083450 original size:343 final size:343
Alignment explanation
Indices: 33082707--33083464 Score: 834
Period size: 354 Copynumber: 2.2 Consensus size: 343
33082697 TGGTCGGTTG
** * * *
33082707 AGCGCCCGCACGCTCATTTTGTAGGTTGACTTAGTCATACGGACTTCATCCCCAGTCTAAGCATA
1 AGCGCCCGCACGCTCATTTCATGGGTTGACTTAG-CATACGGAGTTCATCACCAGTCTAAGCATA
* * * ** **
33082772 TGGAGTTCATTCCCAGTCTAAGTTTGGATTGGATTGAGGGTTGCGGCAGATGGATCAACAGCACG
65 CGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGCAGATGGATCAACAGCACG
* * * *
33082837 CAGGGGGGATCGGACCGATCCCGGCTTGCACATTCTGCCTCTCTGATCGGCTGAGTGCCCATACG
130 CAGGGGGGACCGGACCGATCCCGGCTTGCACATTCTACCTCTCTAATCGGCTGAGCGCCCATACG
* * * ** *
33082902 CTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCCTAGCCCCAGTCGGACTGAG
195 CTCATTTCATGGGTTGGCTTAGGCATACGAAGTTCACTCCATGTCCTAGCCCCAACCAGACTGAG
* * *
33082967 GGTTGTGGTAGCAGGACCGGCCGTCAGATCGACAGCACGCAGAGGGGGACCGGGTTGATCCCCGG
260 GGTTGTGGTAGC--GA--------CAGATCGACAGCACACAGAGGGGGACAGGGCTGATCCCCGG
*** *
33083032 CTTGCACATTATGCCTCCTCGGTCGACTG
315 CTTGCACATTATGCCTCCTCAACCGACTC
* *
33083061 AGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCACTAGTCTAAGCATA
1 AGCGCCCGCACGCTCATTTCATGGGTTGACTTA-GCATACGGAGTTCATCACCAGTCTAAGCATA
*
33083126 CGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGCA-ATAGGATCGACAGCAC
65 CGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGCAGAT-GGATCAACAGCAC
* * *
33083190 GCAGGGGGGACC-GAGTCGATCCTCGGCTTGCGCATTCTACCTCTC-AATCCGGTTGAGCGCCCG
129 GCAGGGGGGACCGGA-CCGATCC-CGGCTTGCACATTCTACCTCTCTAAT-CGGCTGAGCGCCC-
* * *
33083253 CTCAC-C-CATTTCATGGGTTGGCTTAGGCATAGGGAGTTCACTCCATGT-CTAAGCCCCAACCA
190 AT-ACGCTCATTTCATGGGTTGGCTTAGGCATACGAAGTTCACTCCATGTCCT-AGCCCCAACCA
* *
33083315 GACTGAGGGTTGTGGTAGC-A-AGATCGACAGCACATAGAGGGGGACAGGGCTGATCCCTGGCTT
253 GACTGAGGGTTGTGGTAGCGACAGATCGACAGCACACAGAGGGGGACAGGGCTGATCCCCGGCTT
* * *
33083378 GCGCGTTATGCCTCTTCAACC-AGCTC
318 GCACATTATGCCTCCTCAACCGA-CTC
* * *
33083404 AGTGCCCGCATGCTCATTTCATGGGTTGACTTATGCATAAGGAGTTCATTC-CCAGTCTAAG
1 AGCGCCCGCACGCTCATTTCATGGGTTGACTTA-GCATACGGAGTTCA-TCACCAGTCTAAG
33083465 ATTGGACCGG
Statistics
Matches: 345, Mismatches: 49, Indels: 31
0.81 0.12 0.07
Matches are distributed among these distances:
342 1 0.00
343 107 0.31
344 2 0.01
352 1 0.00
353 4 0.01
354 130 0.38
355 96 0.28
356 2 0.01
357 2 0.01
ACGTcount: A:0.20, C:0.27, G:0.28, T:0.24
Consensus pattern (343 bp):
AGCGCCCGCACGCTCATTTCATGGGTTGACTTAGCATACGGAGTTCATCACCAGTCTAAGCATAC
GGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGCAGATGGATCAACAGCACGC
AGGGGGGACCGGACCGATCCCGGCTTGCACATTCTACCTCTCTAATCGGCTGAGCGCCCATACGC
TCATTTCATGGGTTGGCTTAGGCATACGAAGTTCACTCCATGTCCTAGCCCCAACCAGACTGAGG
GTTGTGGTAGCGACAGATCGACAGCACACAGAGGGGGACAGGGCTGATCCCCGGCTTGCACATTA
TGCCTCCTCAACCGACTC
Found at i:33083607 original size:158 final size:156
Alignment explanation
Indices: 33083128--33083622 Score: 457
Period size: 158 Copynumber: 3.1 Consensus size: 156
33083118 TAAGCATACG
* * * ** *
33083128 GAGTTCATTCCCA-GTCTAAGATCGGATCAGACCGAGGGTTGCGGCAATAGGATCGACAGCACGC
1 GAGTTCATT-CCATGTCTAAGATCGGACCAGA-CGAGGGTTGTGGTAGCAAGATCGACAGCACGC
* * * *
33083192 AGGGGGGACCGAGTCGATCCTCGGCTTGCGCATTCTACCTCTC-AATCCGGTTGAGCGCCCGCTC
64 AGGGGGGACCGGGTCGATCCTTGGCTTGCGCATTCTGCCTCTCTAA-CCGATTGAGCGCCCG-T-
*
33083256 AC-C-CATTTCATGGGTTGGCTTAGGCATAGG
126 ACGCTCATTTCATGGGTTGGCTTAGGCATA-A
* ** ** **
33083286 GAGTTCACTCCATGTCTAAGCCCCAACCAGACTGAGGGTTGTGGTAGCAAGATCGACAGCACATA
1 GAGTTCATTCCATGTCTAAGATCGGACCAGAC-GAGGGTTGTGGTAGCAAGATCGACAGCACGCA
* * * * * * * *
33083351 GAGGGGGACAGGG-CTGATCCCTGGCTTGCGCGTTATGCCTCT-TCAACC-AGCTCAGTGCCCGC
65 G-GGGGGACCGGGTC-GATCCTTGGCTTGCGCATTCTGCCTCTCT-AACCGA-TTGAGCGCCCGT
* * *
33083413 ATGCTCATTTCATGGGTTGACTTATGCATAA
126 ACGCTCATTTCATGGGTTGGCTTAGGCATAA
* * * *
33083444 GGAGTTCATTCCCA-GTCTAAGATTGGACCGGATCGAGGGTTATGGTAGCAAGATCGACAGCATG
1 -GAGTTCATT-CCATGTCTAAGATCGGACCAGA-CGAGGGTTGTGGTAGCAAGATCGACAGCACG
**
33083508 CAGGGGGGACCGGGTCGATCCTTGGCTTGCGCATTCTGCCTCTCTGGCCGATTGAGCGCCCGTAC
63 CAGGGGGGACCGGGTCGATCCTTGGCTTGCGCATTCTGCCTCTCTAACCGATTGAGCGCCCGTAC
* * *
33083573 GCTCGTTTCGTCGGTTGGCTTAGGCATATA
128 GCTCATTTCATGGGTTGGCTTAGGCATA-A
33083603 GAGTTCATTCCATGTCTAAG
1 GAGTTCATTCCATGTCTAAG
33083623 CATATAGAGT
Statistics
Matches: 264, Mismatches: 56, Indels: 34
0.75 0.16 0.10
Matches are distributed among these distances:
157 8 0.03
158 133 0.50
159 117 0.44
160 6 0.02
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.24
Consensus pattern (156 bp):
GAGTTCATTCCATGTCTAAGATCGGACCAGACGAGGGTTGTGGTAGCAAGATCGACAGCACGCAG
GGGGGACCGGGTCGATCCTTGGCTTGCGCATTCTGCCTCTCTAACCGATTGAGCGCCCGTACGCT
CATTTCATGGGTTGGCTTAGGCATAA
Found at i:33083632 original size:26 final size:26
Alignment explanation
Indices: 33083596--33083648 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
33083586 GTTGGCTTAG
33083596 GCATATAGAGTTCATT-CCATGTCTAA
1 GCATATAGAGTTCATTCCCA-GTCTAA
33083622 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATATAGAGTTCATTCCCAGTCTAA
33083648 G
1 G
33083649 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.32
Consensus pattern (26 bp):
GCATATAGAGTTCATTCCCAGTCTAA
Found at i:33084343 original size:26 final size:26
Alignment explanation
Indices: 33084307--33084359 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
33084297 GTTGACTTAG
*
33084307 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTAATCCCCAGTCTAA
* * *
33084333 GCATACGGAGTTAATTCCTAGTCTAA
1 GCATACAGAGTTAATCCCCAGTCTAA
33084359 G
1 G
33084360 ATCGAACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTAATCCCCAGTCTAA
Found at i:33084539 original size:26 final size:26
Alignment explanation
Indices: 33084490--33084542 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
33084480 GTTAGCTTAG
*
33084490 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATCCCATGTCTAA
*
33084516 GCATACGGAGTTCATCCCCA-GTCTAA
1 GCATACAGAGTTCAT-CCCATGTCTAA
33084542 G
1 G
33084543 ATTTTCGAGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCATGTCTAA
Found at i:33086855 original size:184 final size:184
Alignment explanation
Indices: 33086644--33087000 Score: 504
Period size: 184 Copynumber: 1.9 Consensus size: 184
33086634 TCAGCTTACC
* *
33086644 GCCCGCATGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTT-CATCCCCAGTCTAAGCTTA-C
1 GCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGA-TTCCATCCCCAGTCTAAGCATATC
* * *
33086707 GATGTTCATTCCCAGTCTAAGATCAG-ACCGGACCGAGGGTTGCGATAGCAGGATCGGCAGCACG
65 GA-GTTCATTCCCAGTCTAAGAT-AGAACCAGACCGAGGGTTACGACAGCAGGATCGGCAGCACG
* ** *
33086771 CAGGGGGGACAAGGCCGATCCCCAGTTTATGTATCCTGCCTCTCTGGTCGGTTGAGT
128 CAGGAGGGACAAGGCCGATCCCCAACTTACGTATCCTGCCTCTCTGGTCGGTTGAGT
* *
33086828 GCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGATTCCATCCCCAGTCTAAGCATATGG
1 GCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGATTCCATCCCCAGTCTAAGCATATCG
* * * *
33086893 AGTTCATTCCCAGTCTAAGATTGAACCAGATCGAGGGTTACGGCAGCAGGATTGGCAGCACGCAG
66 AGTTCATTCCCAGTCTAAGATAGAACCAGACCGAGGGTTACGACAGCAGGATCGGCAGCACGCAG
* * *
33086958 GAGGGACCAGGTCGATCCCCAACTTACGTATTCTGCCTCTCTG
131 GAGGGACAAGGCCGATCCCCAACTTACGTATCCTGCCTCTCTG
33087001 ACCGGCTGAG
Statistics
Matches: 152, Mismatches: 18, Indels: 6
0.86 0.10 0.03
Matches are distributed among these distances:
183 3 0.02
184 147 0.97
185 2 0.01
ACGTcount: A:0.22, C:0.27, G:0.27, T:0.24
Consensus pattern (184 bp):
GCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGATTCCATCCCCAGTCTAAGCATATCG
AGTTCATTCCCAGTCTAAGATAGAACCAGACCGAGGGTTACGACAGCAGGATCGGCAGCACGCAG
GAGGGACAAGGCCGATCCCCAACTTACGTATCCTGCCTCTCTGGTCGGTTGAGT
Found at i:33087891 original size:368 final size:367
Alignment explanation
Indices: 33087339--33088001 Score: 963
Period size: 368 Copynumber: 1.8 Consensus size: 367
33087329 GCTCATTTCA
33087339 TGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTTGTGGT
1 TGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTTGTGGT
* * * ** * *
33087404 AGCAGGACTGACAGCGGGATCGACAGCACGCAGAGAGGGATTGGGTTGATCCCCGGCTTATGCAT
66 AGCAGGACCGACAGCGCGATCGACAGCACACAGAGAGGGACCGGGCTAATCCCCGGCTTATGCAT
* * ** * *
33087469 TATGCCTCTCCGACTGACCTTTTTGGTCGGCTTAGTGCCCGCACGCTCGTTTCGTGGGTTGACTT
131 TATGCCTCTCCGACCGACCTCTCCGATCGGCTTAGCGCCCGCACGCTCGTTTCGTGGGTTGACTT
* *
33087534 AGGCACACGGAGTTCATCCCGAGTCTAAGCATACAGAGTTTATTCCCAGTCTAAGATCAGACCGG
196 AGGCACACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGG
* * * *
33087599 A-CTGAGGGTTGCAGTAGTAGGATCGGCAGCATGTAGGGAGGATCAAATCGATCCTCAGGTTGTC
261 ATC-GAGGGCTAC-GCAGTAGGATCGACAGCATGTAGGGAGGATCAAATCGATCCTCAGGTTGTC
33087663 CATTCTGCCTCTCCGATCGGCTAAGCGCCCGCGTGCTCGTTTTG
324 CATTCTGCCTCTCCGATCGGCTAAGCGCCCGCGTGCTCGTTTTG
*
33087707 TGGGTTGGCTTAGGCATAC-AGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGG
1 TGGGTTGGCTTAGGCATACGA-AGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTTGTGG
* * ** * *
33087771 TAGCAGGACCGGCAGTGCGATCGACAGCACACAGAGCTGGACCGGGCTAATCCCTGGCTTGTGCA
65 TAGCAGGACCGACAGCGCGATCGACAGCACACAGAGAGGGACCGGGCTAATCCCCGGCTTATGCA
* * *
33087836 TTATGCCTCTCTGACCGACCTCTCCGATCGG-TTGAGCGCTCGCACGCTTGTTTCGTGGGTTGAC
130 TTATGCCTCTCCGACCGACCTCTCCGATCGGCTT-AGCGCCCGCACGCTCGTTTCGTGGGTTGAC
* * * *
33087900 TTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCCTTCCCAGTCTAAGATCAGATC
194 TTAGGCACACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACC
*
33087965 GGATCGAGGGCTACGCAGTAGGATCGATAGCATGTAG
259 GGATCGAGGGCTACGCAGTAGGATCGACAGCATGTAG
33088002 AGGGGACCGA
Statistics
Matches: 258, Mismatches: 34, Indels: 7
0.86 0.11 0.02
Matches are distributed among these distances:
367 23 0.09
368 234 0.91
369 1 0.00
ACGTcount: A:0.20, C:0.25, G:0.29, T:0.25
Consensus pattern (367 bp):
TGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTTGTGGT
AGCAGGACCGACAGCGCGATCGACAGCACACAGAGAGGGACCGGGCTAATCCCCGGCTTATGCAT
TATGCCTCTCCGACCGACCTCTCCGATCGGCTTAGCGCCCGCACGCTCGTTTCGTGGGTTGACTT
AGGCACACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGG
ATCGAGGGCTACGCAGTAGGATCGACAGCATGTAGGGAGGATCAAATCGATCCTCAGGTTGTCCA
TTCTGCCTCTCCGATCGGCTAAGCGCCCGCGTGCTCGTTTTG
Found at i:33087940 original size:26 final size:26
Alignment explanation
Indices: 33087904--33087956 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
33087894 GTTGACTTAG
33087904 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
33087930 GCATACGGAGTTCCTTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
33087956 G
1 G
33087957 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.30, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:33089788 original size:26 final size:26
Alignment explanation
Indices: 33089752--33089801 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
33089742 GACCTAGGCA
*
33089752 TACGGAGTTCATCTCC-AGTCTAAGCT
1 TACGAAGTTCAT-TCCTAGTCTAAGCT
33089778 TACGAAGTTCATTCCTAGTCTAAG
1 TACGAAGTTCATTCCTAGTCTAAG
33089802 ATCAGACCGG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 3 0.14
26 19 0.86
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.32
Consensus pattern (26 bp):
TACGAAGTTCATTCCTAGTCTAAGCT
Found at i:33090600 original size:26 final size:26
Alignment explanation
Indices: 33090570--33090622 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
33090560 GTTGACTTAG
33090570 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* * *
33090596 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
33090622 G
1 G
33090623 ATCTGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:33091210 original size:11 final size:11
Alignment explanation
Indices: 33091194--33091219 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
33091184 CCCGGGGCAA
33091194 CATCGTCGGAC
1 CATCGTCGGAC
33091205 CATCGTCGGAC
1 CATCGTCGGAC
33091216 CATC
1 CATC
33091220 ACTGGAGAGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.19, C:0.38, G:0.23, T:0.19
Consensus pattern (11 bp):
CATCGTCGGAC
Found at i:33091836 original size:26 final size:26
Alignment explanation
Indices: 33091807--33091859 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
33091797 GTTGACTTAG
*
33091807 GCATATAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* **
33091833 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
33091859 G
1 G
33091860 ATCGGAACTG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:33092946 original size:134 final size:134
Alignment explanation
Indices: 33092706--33092960 Score: 350
Period size: 134 Copynumber: 1.9 Consensus size: 134
33092696 AGTTCATCCC
* * * * *
33092706 CAGTCTAAGTATATAGAGTTCATTTCCAGTCTAAGATCACACCAGACCGAGGGTTACGGTAGCAA
1 CAGTCTAAGCATACAAAGTTCATTCCCAGTCTAAGATCACACCAGACCGAGGGTTACGATAGCAA
* * * *
33092771 GATCGATAGCACGCAGGGGGGACTGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGCTGGC
66 GATCGACAGCACGCAGGGGGGACTGAGTCGATCACCGGCTTGCGCATTCTACCTCTTCGGCTGGC
33092836 TGAG
131 TGAG
* * ** *
33092840 CAGTCTAAGCATACAAAGTTCGTTCCCAGTCTAAGATCAGACTGGATCGAGGGTTACGATAGCAA
1 CAGTCTAAGCATACAAAGTTCATTCCCAGTCTAAGATCACACCAGACCGAGGGTTACGATAGCAA
* *
33092905 GATCGACAGCACGCAGGGGGGA-TCGAGTCGATCACTGGCTTGTGCATTCTACCTCT
66 GATCGACAGCACGCAGGGGGGACT-GAGTCGATCACCGGCTTGCGCATTCTACCTCT
33092961 CTGGCCGACT
Statistics
Matches: 104, Mismatches: 16, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
133 1 0.01
134 103 0.99
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.23
Consensus pattern (134 bp):
CAGTCTAAGCATACAAAGTTCATTCCCAGTCTAAGATCACACCAGACCGAGGGTTACGATAGCAA
GATCGACAGCACGCAGGGGGGACTGAGTCGATCACCGGCTTGCGCATTCTACCTCTTCGGCTGGC
TGAG
Found at i:33093211 original size:160 final size:158
Alignment explanation
Indices: 33092911--33093357 Score: 348
Period size: 160 Copynumber: 2.8 Consensus size: 158
33092901 GCAAGATCGA
** * * * *
33092911 CAGCACGCAGGGGGGATCGAGTCGATCACTGGCTTGTGCATTCTACCTCTCTGGCCGACTGAGCA
1 CAGCACGCAGGGGGGATCGAGTCGATCACCAGCTTGCGCATTATACCTCTCTGGCCGACTCAACA
* * *
33092976 CCCGCACGCCCGTTTCGTGGGTTGACTTGGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCT
66 CCCGCACGCCCGTTTCGTGGGTTGACTTGGGCATACGAAATTCATTCCATGTCTAAGCCCCAGCT
* *
33093041 GGATTGAGGGTTGTGGCAGCGGGACTGG
131 AGACTGAGGGTTGTGGCAGCGGGACTGG
* * *
33093069 CAGCACGTAGAGGGGGATCGAGTCGATCCCCAGCTTGCGCATTATGCCTCT-TCGGCCGACTCAA
1 CAGCACGCAG-GGGGGATCGAGTCGATCACCAGCTTGCGCATTATACCTCTCT-GGCCGACTCAA
* * * **
33093133 CACCTTGCACGCTCGTTTCGTGGGTTGACTTATGG-ATACGAAATTCATTCCCA-GTCTAAG-AT
64 CACC-CGCACGCCCGTTTCGTGGGTTGACTT-GGGCATACGAAATTCATT-CCATGTCTAAGCCC
* * * * ** *
33093195 CGGATCAGACTGAGGGTTGCGACAGTAGGA-TCGA
126 CAGCT-AGACTGAGGGTTGTGGCAGCGGGACT-GG
* * * * * * * * * * ***
33093229 CAGCATGCAGGGAGGGATCGGGCCAATCCCCGGCTTGCGCATTCTACCTCTC-CGACTAGCTGGG
1 CAGCACGCAGGG-GGGATCGAGTCGATCACCAGCTTGCGCATTATACCTCTCTGGCCGA-CTCAA
** * * * * * *
33093293 TGCCCGCACGCTCATTTCGTGGGTTGCCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAG
64 CACCCGCACGCCCGTTTCGTGGGTTGACTTGGGCATACGAAATTCATTCCATGTCTAAGCCCCAG
33093358 TCGGACCAAG
Statistics
Matches: 225, Mismatches: 51, Indels: 24
0.75 0.17 0.08
Matches are distributed among these distances:
158 15 0.07
159 98 0.44
160 107 0.48
161 5 0.02
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.24
Consensus pattern (158 bp):
CAGCACGCAGGGGGGATCGAGTCGATCACCAGCTTGCGCATTATACCTCTCTGGCCGACTCAACA
CCCGCACGCCCGTTTCGTGGGTTGACTTGGGCATACGAAATTCATTCCATGTCTAAGCCCCAGCT
AGACTGAGGGTTGTGGCAGCGGGACTGG
Found at i:33094045 original size:26 final size:26
Alignment explanation
Indices: 33093995--33094045 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
33093985 TTGGCTTAGG
* *
33093995 CATATGGAGTTCATTCTATGTCTAAC
1 CATACGGAGTTCATTCTATGCCTAAC
33094021 CATACGGAGTTCATTCCTA-GCCTAA
1 CATACGGAGTTCATT-CTATGCCTAA
33094046 TATCAACCGG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.27, C:0.24, G:0.16, T:0.33
Consensus pattern (26 bp):
CATACGGAGTTCATTCTATGCCTAAC
Found at i:33094390 original size:26 final size:26
Alignment explanation
Indices: 33094360--33094409 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
33094350 GTTGACTTAG
33094360 GCATACAAAGTTCA-TCCCTAGTCTAA
1 GCATACAAAGTTCATTCCC-AGTCTAA
*
33094386 GCATACAGAGTTCATTCCCAGTCT
1 GCATACAAAGTTCATTCCCAGTCT
33094410 CAGATCGGAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 18 0.82
27 4 0.18
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.28
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAGTCTAA
Found at i:33094687 original size:26 final size:26
Alignment explanation
Indices: 33094657--33094709 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33094647 GTAGGCTTAG
*
33094657 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
33094683 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
33094709 G
1 G
33094710 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:33095906 original size:26 final size:26
Alignment explanation
Indices: 33095876--33095928 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
33095866 GTTGGGTTAG
33095876 GCATATGGAGTTCA-TTCCATGTCTAA
1 GCATATGGAGTTCATTTCCA-GTCTAA
33095902 GCATATGGAGTTCATTTCCAGTCTAA
1 GCATATGGAGTTCATTTCCAGTCTAA
33095928 G
1 G
33095929 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 21 0.81
27 5 0.19
ACGTcount: A:0.26, C:0.19, G:0.21, T:0.34
Consensus pattern (26 bp):
GCATATGGAGTTCATTTCCAGTCTAA
Found at i:33096606 original size:26 final size:26
Alignment explanation
Indices: 33096560--33096612 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
33096550 GTTGACCTAG
*
33096560 GCATACAGAGTTCATCTCCAGTCTAA
1 GCATACAGAGTTCATCTCCAGTATAA
*
33096586 GCATACAGTGTTCAT-TCCCAGTATAA
1 GCATACAGAGTTCATCT-CCAGTATAA
33096612 G
1 G
33096613 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCTCCAGTATAA
Found at i:33096960 original size:26 final size:26
Alignment explanation
Indices: 33096929--33096979 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
33096919 TTGACTTAGG
33096929 CATACGGAGTTCATCCCCAGTCTAAC
1 CATACGGAGTTCATCCCCAGTCTAAC
*
33096955 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATCCCCAGTCTAA
33096980 GATCGGACCG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.31, G:0.16, T:0.25
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAGTCTAAC
Found at i:33097273 original size:159 final size:157
Alignment explanation
Indices: 33097086--33097773 Score: 581
Period size: 159 Copynumber: 4.3 Consensus size: 157
33097076 TAGCATCCGT
* * *
33097086 ACGCCCGTGTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCGAACT
1 ACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCC-AGCCGAACT
** * * * * * * *
33097151 GAGGGTTATGGCAGCGGGACCAACAGCACGTAGAAGGGGATCGGGCCGATCCTCGACTTGCTCAC
65 GAGGGTTGCGGCAGCAGGACCGACAGCACGTAG-GGGGGATCGGGCCGATCCCCGGCTTGCACAT
* ** ** *
33097216 TATGCCTCTTCGATCGGTTCAGTGCCCTC
129 TATGCCTCTCCGGCCGACTCAGTGCCCGC
* * ** * * * *
33097245 AGGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-CCCTAAGATCAAACCGTAC
1 ACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAG-CCCAGCCGAAC
** ** * * *
33097309 CAAGGGTTGCGGCAGCAGGATTGACAGCACGGAGGGGGTGATCGGGCTGATCCCCGGCTTGCCCA
64 TGAGGGTTGCGGCAGCAGGACCGACAGCACGTAGGGGG-GATCGGGCCGATCCCCGGCTTGCACA
* * * * *
33097374 TTCTGCCTCTCCGCCCGGCTGAGCGCCCGC
128 TTATGCCTCTCCGGCCGACTCAGTGCCCGC
* * * * *
33097404 ACGCTCGTTTCATAGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCATCTGAA-T
1 ACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG-CCCAGCCGAACT
* * * * ** * * * *
33097468 CGTGGGTTGTGGCAACGGGACCGGTAGCACGCAGAGGGGGATAGGGCCGATCCCCGGCTTACACG
65 -GAGGGTTGCGGCAGCAGGACCGACAGCACGTAG-GGGGGATCGGGCCGATCCCCGGCTTGCACA
*
33097533 TTATGCCTCTTCGGCCGACTCAGTGCCCGC
128 TTATGCCTCTCCGGCCGACTCAGTGCCCGC
* * * * * ** * *
33097563 ACGCTCTTTTCATGGGTTGACTTATGCATACGAAGTTCATTCCCA-GTCTAAGATCAGACCGGAT
1 ACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCAG-CCGAAC
* * * * * * *
33097627 TGAGGGTTGCGGCAGCAAGATCGATAGCACATAGGGGGGACCGGGTCGATCCCCGGCTTGCGCAT
64 TGAGGGTTGCGGCAGCAGGACCGACAGCACGTAGGGGGGATCGGGCCGATCCCCGGCTTGCACAT
* * * *
33097692 TTTGCCTCTCCGGTCGATTGAGTGCCCGC
129 TATGCCTCTCCGGCCGACTCAGTGCCCGC
* *
33097721 ACGCTCGTTTCGTTGGTTGGCTTAGGCATACGGAGTTCATTTCATGTCTAAGC
1 ACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
33097774 ATATGGAGTT
Statistics
Matches: 411, Mismatches: 108, Indels: 21
0.76 0.20 0.04
Matches are distributed among these distances:
157 2 0.00
158 99 0.24
159 298 0.73
160 12 0.03
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.24
Consensus pattern (157 bp):
ACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAGCCGAACTG
AGGGTTGCGGCAGCAGGACCGACAGCACGTAGGGGGGATCGGGCCGATCCCCGGCTTGCACATTA
TGCCTCTCCGGCCGACTCAGTGCCCGC
Found at i:33097540 original size:318 final size:317
Alignment explanation
Indices: 33096955--33097773 Score: 843
Period size: 318 Copynumber: 2.6 Consensus size: 317
33096945 CCAGTCTAAC
* ** ** * ** * *
33096955 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGATAGGAGGATCGACAG
1 CATACGAAGTTCATTCCCACCCTAAGATCAAACCGGACCAAGGGTTGCGGCAGCAAGATCGACAG
* ** ** * * * * ** * * **
33097020 CACACA-GAAGGACCGGACCGATCCCTGGCTTACACATTCTGCCTCTCTGATCGGCTTAGCATCC
66 CACAGAGGGGGGACCGGGTCGATCCCCGGCTTGCCCATTCTGCCTCTCCGCCCGACTGAGCGCCC
* * * * * * *
33097084 GTACGCCCGTGTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCGAA
131 GCACGCTCGTTTCATAGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGAA
* * * * * *
33097149 CTGAGGGTTATGGCAGCGGGACCAACAGCACGTAGAAGGGGATCGGGCCGATCCTCGACTTGCTC
196 CTGAGGGTTATGGCAACGGGACCAACAGCACGCAGAAGGGGATAGGGCCGATCCCCGACTTACAC
* ** * * *
33097214 ACTATGCCTCTTCGATCGGTTCAGTGCCCTCAGGCTCGTTTCGTGGGTTGACTTAGG
261 ACTATGCCTCTTCGACCGACTCAGTGCCCGCACGCTCGTTTCATGGGTTGACTTAGG
* * * *
33097271 CATACGGAGTTCATTCCCACCCTAAGATCAAACCGTACCAAGGGTTGCGGCAGCAGGATTGACAG
1 CATACGAAGTTCATTCCCACCCTAAGATCAAACCGGACCAAGGGTTGCGGCAGCAAGATCGACAG
* * *
33097336 CACGGAGGGGGTGATCGGG-CTGATCCCCGGCTTGCCCATTCTGCCTCTCCGCCCGGCTGAGCGC
66 CACAGAGGGGG-GACCGGGTC-GATCCCCGGCTTGCCCATTCTGCCTCTCCGCCCGACTGAGCGC
* * *
33097400 CCGCACGCTCGTTTCATAGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCATCTG
129 CCGCACGCTCGTTTCATAGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCG
* * *** * *
33097465 AA-TCGTGGGTTGTGGCAACGGGACCGGTAGCACGCAGAGGGGGATAGGGCCGATCCCCGGCTTA
194 AACT-GAGGGTTATGGCAACGGGACCAACAGCACGCAGAAGGGGATAGGGCCGATCCCCGACTTA
** * * *
33097529 CACGTTATGCCTCTTCGGCCGACTCAGTGCCCGCACGCTCTTTTCATGGGTTGACTTATG
258 CACACTATGCCTCTTCGACCGACTCAGTGCCCGCACGCTCGTTTCATGGGTTGACTTAGG
** * *** *
33097589 CATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGATTGAGGGTTGCGGCAGCAAGATCGATAG
1 CATACGAAGTTCATTCCCACCCTAAGATCAAACCGGACCAAGGGTTGCGGCAGCAAGATCGACAG
* * * ** * *
33097654 CACATAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTTTGCCTCTCCGGTCGATTGAGTGCCC
66 CACAGAGGGGGGACCGGGTCGATCCCCGGCTTGCCCATTCTGCCTCTCCGCCCGACTGAGCGCCC
* * *
33097719 GCACGCTCGTTTCGTTGGTTGGCTTAGGCATACGGAGTTCATTTCATGTCTAAGC
131 GCACGCTCGTTTCATAGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
33097774 ATATGGAGTT
Statistics
Matches: 414, Mismatches: 84, Indels: 9
0.82 0.17 0.02
Matches are distributed among these distances:
316 59 0.14
317 99 0.24
318 256 0.62
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.24
Consensus pattern (317 bp):
CATACGAAGTTCATTCCCACCCTAAGATCAAACCGGACCAAGGGTTGCGGCAGCAAGATCGACAG
CACAGAGGGGGGACCGGGTCGATCCCCGGCTTGCCCATTCTGCCTCTCCGCCCGACTGAGCGCCC
GCACGCTCGTTTCATAGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGAA
CTGAGGGTTATGGCAACGGGACCAACAGCACGCAGAAGGGGATAGGGCCGATCCCCGACTTACAC
ACTATGCCTCTTCGACCGACTCAGTGCCCGCACGCTCGTTTCATGGGTTGACTTAGG
Found at i:33097782 original size:26 final size:26
Alignment explanation
Indices: 33097746--33097804 Score: 93
Period size: 26 Copynumber: 2.3 Consensus size: 26
33097736 GTTGGCTTAG
*
33097746 GCATACGGAGTTCATT-TCATGTCTAA
1 GCATATGGAGTTCATTCTCA-GTCTAA
33097772 GCATATGGAGTTCATTCTCAGTCTAA
1 GCATATGGAGTTCATTCTCAGTCTAA
33097798 GCATATG
1 GCATATG
33097805 CACATGCTAG
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
26 28 0.90
27 3 0.10
ACGTcount: A:0.27, C:0.19, G:0.20, T:0.34
Consensus pattern (26 bp):
GCATATGGAGTTCATTCTCAGTCTAA
Found at i:33098483 original size:26 final size:26
Alignment explanation
Indices: 33098447--33098499 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
33098437 ATTGACTTAG
33098447 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
33098473 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
33098499 G
1 G
33098500 ATCAAATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:33098916 original size:26 final size:26
Alignment explanation
Indices: 33098887--33098939 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
33098877 GTTGGCTTAG
*
33098887 GCATACGAGGTTCATTCCAAGTCTAA
1 GCATACGAAGTTCATTCCAAGTCTAA
*
33098913 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCAAGTCTAA
33098939 G
1 G
33098940 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCAAGTCTAA
Found at i:33099427 original size:26 final size:26
Alignment explanation
Indices: 33099394--33099448 Score: 85
Period size: 26 Copynumber: 2.1 Consensus size: 26
33099384 TGGGTTGGCT
33099394 TAAGCATAC-GAAGTTCATCCCCAGTC
1 TAAGCATACAG-AGTTCATCCCCAGTC
*
33099420 TAAGCATACAGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTCATCCCCAGTC
33099446 TAA
1 TAA
33099449 TATCGGATTG
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
26 26 0.96
27 1 0.04
ACGTcount: A:0.33, C:0.27, G:0.15, T:0.25
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATCCCCAGTC
Found at i:33099933 original size:26 final size:26
Alignment explanation
Indices: 33099897--33099949 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
33099887 GTTAGCTTAG
33099897 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATATGGAGTTCATTCCCA-GTCTAA
33099923 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
33099949 G
1 G
33099950 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:33100656 original size:26 final size:26
Alignment explanation
Indices: 33100619--33100671 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
33100609 GTTGACTTAG
*
33100619 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGAAGTTCATTCCCAGTCTAA
* *
33100645 GCATATGAAGTTCATTCCTAGTTTAA
1 GCATATGAAGTTCATTCCCAGTCTAA
33100671 G
1 G
33100672 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.34
Consensus pattern (26 bp):
GCATATGAAGTTCATTCCCAGTCTAA
Done.