Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 362 of 402
Found at i:33102204 original size:26 final size:26
Alignment explanation
Indices: 33102168--33102220 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
33102158 GTTGGCTTAG
33102168 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
33102194 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
33102220 G
1 G
33102221 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:33102383 original size:26 final size:26
Alignment explanation
Indices: 33102353--33102405 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
33102343 GTTGGCTTAG
**
33102353 GCATACGGAGTTCATTCCTTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
33102379 GCATACGGAGTTGATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
33102405 G
1 G
33102406 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:33102404 original size:185 final size:182
Alignment explanation
Indices: 33102145--33102679 Score: 601
Period size: 185 Copynumber: 2.9 Consensus size: 182
33102135 GCAGCCACAT
** *
33102145 GCTCATTTTGTGAGTTGGCTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATT
1 GCTCATTTCATGAGTTGGCTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATT
* *
33102210 CCTAGTCTAAGATCAGACCGGACTGAAGGTTACGACAGTAGGATC-GACAGCACACAGAGGGGGA
66 CCTAGTCTAAGATCAGACCGGAC-GAAGGTTATGGCAGTAGGATCAG-CAGCACACAG-GGGGGA
* *
33102274 TCGAGCCGATCCCCGCCTTACGCATTCTGCCTCTCCGGCCAG-TCAAGTGCCTGCAC
128 TCGAGCCGATCCCCG-CTTACGCATTCTGCCTCTCCGGCCAGCT-AAGCGCCCGCAC
* * ** *
33102330 GCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCTTGTCTAAGCATACGGAGTTGATT
1 GCTCATTTCATGAGTTGGCTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATT
* * * * *
33102395 CCCAGTCTAAGATCAGACCGGACCGAGGGTTATGGCAGCAGGATCAGCAGTATACAGGCGGGGAT
66 CCTAGTCTAAGATCAGACCGGA-CGAAGGTTATGGCAGTAGGATCAGCAGCACACAGG-GGGGAT
* * * *** *
33102460 CGA-CCTGATCCCCTGCTTGCACATTCTGCCTCTTCGGTTTGCTGAGCGCCCGCAC
129 CGAGCC-GATCCCC-GCTTACGCATTCTGCCTCTCCGGCCAGCTAAGCGCCCGCAC
**
33102515 GCTTGTTTCATGAGTTGGCTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATT
1 GCTCATTTCATGAGTTGGCTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATT
* * * * * **
33102580 TCTAGTCTAAGATC-GATCCAGACCAAGGGTTGTGGCAGTAAGATCAGCAGCACGTAGGGGGGAT
66 CCTAGTCTAAGATCAGA-CCGGACGAA-GGTTATGGCAGTAGGATCAGCAGCACACAGGGGGGAT
* * * *
33102644 CGGGTCGATCCCCGGCTTCCGTATTCTGCCTCTCCG
129 CGAGCCGATCCCC-GCTTACGCATTCTGCCTCTCCG
33102680 ATCGGCTGGG
Statistics
Matches: 291, Mismatches: 50, Indels: 19
0.81 0.14 0.05
Matches are distributed among these distances:
184 40 0.14
185 247 0.85
186 4 0.01
ACGTcount: A:0.21, C:0.26, G:0.27, T:0.25
Consensus pattern (182 bp):
GCTCATTTCATGAGTTGGCTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATT
CCTAGTCTAAGATCAGACCGGACGAAGGTTATGGCAGTAGGATCAGCAGCACACAGGGGGGATCG
AGCCGATCCCCGCTTACGCATTCTGCCTCTCCGGCCAGCTAAGCGCCCGCAC
Found at i:33102591 original size:370 final size:376
Alignment explanation
Indices: 33101945--33102679 Score: 884
Period size: 370 Copynumber: 2.0 Consensus size: 376
33101935 CTGAGTACCC
* * *
33101945 GCACACTCGTTTCTTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCGAAGCATATGGAGTT
1 GCACACTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCGAAGCATACGGAGTT
* * *
33102010 CATTCCCAATCTAAGATCGGACCAGACCGAGGATTGTGGCAGTAGGACCAGCAGCAGGATCGATA
66 CATTCCCAATCTAAGATCAGACCAGACCGAGGATTATGGCAGCAGG--CAGCAGCAGGATC-ATA
* * *
33102075 GCACGCAGGGGGGATCAGGCTGATCCTTGACTTGCACAGTCTACCTCTTCGACCGGCTGAGCAGC
128 GCACG-AGCGGGGATCAGCCTGATCCCTGACTTGCACAGTCTACCTCTTCGACCGGCTGAGCAGC
* ** *
33102140 CACATGCTCATTTTGTGAGTTGGCTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGT
192 CACACGCTCATTTCATGAGTTGGCTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGT
* * *
33102205 TCATTCCTAGTCTAAGATCAGA-CCGGACTGAA-GGTTACGACAGTAGGATC-GACAGCACACAG
257 TCATTCCTAGTCTAAGATC-GATCCAGAC-CAAGGGTTACGACAGTAAGATCAG-CAGCACACAG
33102267 AGGGGGATCGAGCCGATCCCCGCCTTACGCATTCTGCCTCTCCGGCCAGTCAAGTGCCT
319 -GGGGGATCGAGCCGATCCCCGCCTTACGCATTCTGCCTCTCCGGCCAGTCAAGTGCCT
* * *
33102326 GCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCTTGTCTAAGCATACGGAGTT
1 GCACACTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCGAAGCATACGGAGTT
* * * * *
33102391 GATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTATGGCAGCAGG-ATCAGCA-G-T-ATA-CA
66 CATTCCCAATCTAAGATCAGACCAGACCGAGGATTATGGCAGCAGGCAGCAGCAGGATCATAGCA
* * ****
33102451 -G-GCGGGGATC-GACCTGATCCCCTG-CTTGCACATTCTGCCTCTTCGGTTTGCTGAGC-GCCC
131 CGAGCGGGGATCAG-CCTGAT-CCCTGACTTGCACAGTCTACCTCTTCGACCGGCTGAGCAG-CC
* **
33102511 GCACGCTTGTTTCATGAGTTGGCTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTT
193 ACACGCTCATTTCATGAGTTGGCTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTT
* ** * **
33102576 CATTTCTAGTCTAAGATCGATCCAGACCAAGGGTTGTGGCAGTAAGATCAGCAGCACGTAGGGGG
258 CATTCCTAGTCTAAGATCGATCCAGACCAAGGGTTACGACAGTAAGATCAGCAGCACACAGGGGG
* * * * *
33102641 GATCGGGTCGATCCCCGGCTTCCGTATTCTGCCTCTCCG
323 GATCGAGCCGATCCCCGCCTTACGCATTCTGCCTCTCCG
33102680 ATCGGCTGGG
Statistics
Matches: 304, Mismatches: 44, Indels: 24
0.82 0.12 0.06
Matches are distributed among these distances:
369 44 0.14
370 143 0.47
371 5 0.02
372 1 0.00
373 2 0.01
374 3 0.01
376 1 0.00
377 1 0.00
378 6 0.02
381 98 0.32
ACGTcount: A:0.22, C:0.26, G:0.27, T:0.25
Consensus pattern (376 bp):
GCACACTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCGAAGCATACGGAGTT
CATTCCCAATCTAAGATCAGACCAGACCGAGGATTATGGCAGCAGGCAGCAGCAGGATCATAGCA
CGAGCGGGGATCAGCCTGATCCCTGACTTGCACAGTCTACCTCTTCGACCGGCTGAGCAGCCACA
CGCTCATTTCATGAGTTGGCTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCAT
TCCTAGTCTAAGATCGATCCAGACCAAGGGTTACGACAGTAAGATCAGCAGCACACAGGGGGGAT
CGAGCCGATCCCCGCCTTACGCATTCTGCCTCTCCGGCCAGTCAAGTGCCT
Found at i:33104108 original size:26 final size:26
Alignment explanation
Indices: 33104078--33104130 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
33104068 GTTGACTTAG
*
33104078 GCATATAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
33104104 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
33104130 G
1 G
33104131 ATCAAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:33104291 original size:26 final size:26
Alignment explanation
Indices: 33104262--33104314 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33104252 GTTGACTTAG
*
33104262 GCATACGGAGTTTA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
33104288 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
33104314 G
1 G
33104315 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:33104400 original size:184 final size:184
Alignment explanation
Indices: 33104051--33104473 Score: 494
Period size: 184 Copynumber: 2.3 Consensus size: 184
33104041 TCTCTGGTCG
**
33104051 GCACGCTCGTTTCATGGGTTGACTTAGGCATATAGAGTTCATCCCCAGTCTAAGCATACAGAGTT
1 GCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTT
* ** ** *
33104116 CATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTGCGGCAGCAGGATCGGTAGTACACAGGCGG
66 CATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGCAACAGCAAAATCGGTAGCACACAGGCGG
* * * * *
33104181 GACAGGGTCGATCCTCGATTTACGCATCCTGCCTC-TCTGGTCGACTGAGTGCCC
131 GACAGAGCCGATCCTCGACTTACGCATCCTGCCTCTTC-GGCCGACTGAGCGCCC
* * *
33104235 GCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTTATCCCTAGTCTAAGCATACGGAGTT
1 GCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTT
* * * * *
33104300 CATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAACAGTAAAATTGGTAGCACGCAGGGGG
66 CATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGCAACAGCAAAATCGGTAGCACACAGGCGG
* * ** * *
33104365 GATC-GAGCCGAT-CTCTGGCTTATGCATTTTGCCTCTTCGGCCGGCTGAGCGCTC
131 GA-CAGAGCCGATCCTC-GACTTACGCATCCTGCCTCTTCGGCCGACTGAGCGCCC
* * * * *
33104419 GCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCAT-TCCATGTCTAAGC
1 GCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGC
33104474 CCCAGTCGGA
Statistics
Matches: 201, Mismatches: 34, Indels: 8
0.83 0.14 0.03
Matches are distributed among these distances:
183 5 0.02
184 193 0.96
185 3 0.01
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.25
Consensus pattern (184 bp):
GCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTT
CATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGCAACAGCAAAATCGGTAGCACACAGGCGG
GACAGAGCCGATCCTCGACTTACGCATCCTGCCTCTTCGGCCGACTGAGCGCCC
Found at i:33104793 original size:26 final size:26
Alignment explanation
Indices: 33104763--33104815 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33104753 GTTGGCTTAG
33104763 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
33104789 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
33104815 G
1 G
33104816 ATCGGATCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:33105668 original size:26 final size:26
Alignment explanation
Indices: 33105618--33105670 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
33105608 GTTGGCTTAG
*
33105618 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATATCTAA
33105644 GCATAC-GAAGTTCATTCCCA-ATCTAA
1 GCATACAG-AGTTCATT-CCATATCTAA
33105670 G
1 G
33105671 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 1 0.04
26 20 0.83
27 3 0.12
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Found at i:33106034 original size:26 final size:26
Alignment explanation
Indices: 33105998--33106050 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
33105988 GTTGACTTAG
33105998 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
33106024 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
33106050 G
1 G
33106051 GTCAGATTGC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:33106640 original size:11 final size:11
Alignment explanation
Indices: 33106608--33106634 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
33106598 CCCGGGGCAT
33106608 CATCGCTGGAG
1 CATCGCTGGAG
33106619 CATCGCTGGAG
1 CATCGCTGGAG
33106630 CATCG
1 CATCG
33106635 TCGGAGAGCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.19, C:0.30, G:0.33, T:0.19
Consensus pattern (11 bp):
CATCGCTGGAG
Found at i:33107257 original size:26 final size:26
Alignment explanation
Indices: 33107221--33107271 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
33107211 GTTGACTTAG
* *
33107221 GCATACGGAGTTCGTCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
33107247 GCATACAGAGTTCATTCCCAGTCTA
1 GCATACAGAGTTCATCCCCAGTCTA
33107272 GGATCGAATC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:33107563 original size:159 final size:160
Alignment explanation
Indices: 33107400--33107751 Score: 365
Period size: 159 Copynumber: 2.2 Consensus size: 160
33107390 CATGGGTTGG
* *
33107400 CTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCGGACCAAGGGTGGTGGCAGCACGA
1 CTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGGACCAAGGGTGGTGGCAGCACGA
* * * ** * *
33107464 CCAGCAGCACACAGAGGG-GGACCG-GATCGATCCTCGGCTTGTGCATTATGCCTCTCCGGCCT-
66 CCACCAGCACACAG-GGGAGGACCGAG-CCAATCCTCGGCTTGCACATTATACCTCTCAGG-CTG
*** *
33107526 GCTCAACACTCGCATGGTCATTTTGTGGGTTCA
128 GCTCAACACTCGCACACTCATTTCGTGGGTTCA
* * * * * * *
33107559 CTTAGGCTTACGGAGTTCATTCC-TAGTCTGAG-ATCAGACCGGACCGAGGGTTGTGGTAGCAGG
1 CTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCACCAGACCGGACCAAGGGTGGTGGCAGCACG
* * *
33107622 ATCACCAGCACGCAGGGGAGGACCGAGCCAATCCTCGGCTTGCACATTCTACCTCTCAGGCTGGC
65 ACCACCAGCACACAGGGGAGGACCGAGCCAATCCTCGGCTTGCACATTATACCTCTCAGGCTGGC
* * * **
33107687 TGAGCCCTCGCACACTCATTTCGTGGGTTGG
130 TCAACACTCGCACACTCATTTCGTGGGTTCA
*
33107718 CTTAGGCATACGAAGTTCATTCCATGTCTAAGCA
1 CTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
33107752 TACGAAGTTC
Statistics
Matches: 155, Mismatches: 31, Indels: 13
0.78 0.16 0.07
Matches are distributed among these distances:
158 9 0.06
159 143 0.92
160 3 0.02
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.23
Consensus pattern (160 bp):
CTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGGACCAAGGGTGGTGGCAGCACGA
CCACCAGCACACAGGGGAGGACCGAGCCAATCCTCGGCTTGCACATTATACCTCTCAGGCTGGCT
CAACACTCGCACACTCATTTCGTGGGTTCA
Found at i:33107773 original size:26 final size:26
Alignment explanation
Indices: 33107723--33107775 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33107713 GTTGGCTTAG
*
33107723 GCATACGAAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCATATCTAA
33107749 GCATACGAAGTTCATTCCCA-ATCTAA
1 GCATACGAAGTTCATT-CCATATCTAA
33107775 G
1 G
33107776 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATATCTAA
Found at i:33108130 original size:13 final size:13
Alignment explanation
Indices: 33108112--33108185 Score: 121
Period size: 13 Copynumber: 5.7 Consensus size: 13
33108102 TACGCATTAT
*
33108112 GCCTCTCCGGCTA
1 GCCTCTCCGACTA
33108125 GCCTCTCCGACTA
1 GCCTCTCCGACTA
*
33108138 GCCTCTCCGACTG
1 GCCTCTCCGACTA
33108151 GCCTCTCCGACTA
1 GCCTCTCCGACTA
*
33108164 GCCTCTCCGACTG
1 GCCTCTCCGACTA
33108177 GCCTCTCCG
1 GCCTCTCCG
33108186 GCCGACTGAG
Statistics
Matches: 57, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
13 57 1.00
ACGTcount: A:0.09, C:0.47, G:0.20, T:0.23
Consensus pattern (13 bp):
GCCTCTCCGACTA
Found at i:33108733 original size:158 final size:157
Alignment explanation
Indices: 33108254--33108755 Score: 445
Period size: 158 Copynumber: 3.2 Consensus size: 157
33108244 CCCAGTCTAA
* * * *
33108254 GCATACGAAGTTCATTCCCA-GTCTAAGATCAAACTGGATCAAGGGTTGCGGCAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAATC-GGATCGAGGGTTGCGGCAGCAGGATTGAC
* * * * * *
33108318 AGCACGTAAGGGGGATCAGATCGATCCCCAACTTGCTCATTCTGCCTCTCCGGTCGGCTGAGCGC
64 AGCACGCAGGGGGGACCAGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGC
* *
33108383 TCGCACGCCCATTTCATGGGTTGGCTTAG
129 TCGCACACTCATTTCATGGGTTGGCTTAG
* * ** * * * * * *
33108412 GCATAGGGAGTTCATTCCATGTCTACGCCCCAGTCTGACCGAGGGTTGTGGCAGCGGGACT-AGC
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAATCGGATCGAGGGTTGCGGCAGCAGGATTGA-C
* * * * * * * *
33108476 AGCACGCAGAGGGGGACC-GAGTCGTTCCCCCGCTTGCGCATTATGCCTCTTCGGTTGGTTCAAC
64 AGCACGCAG-GGGGGACCAG-GTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGC
* * * * * ** *
33108540 ACCCACACACTCGTTTCGTGGGTTAACTTAT
127 GCTCGCACACTCATTTCATGGGTTGGCTTAG
* * *** *
33108571 GCATATGGAGTTCATTCCCA-GTCTAAGATCGGATCGGATCGAGGGTTGCAAAAGTAGGATTGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATC-AATCGGATCGAGGGTTGCGGCAGCAGGATTGAC
* * * * *
33108635 AGCACGCAGGGGGGACCAGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGGCCGACTGAGCGC
64 AGCACGCAGGGGGGACCAGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGC
*
33108700 TCGCACACTCATTTCTTGGGTTGGCTTAG
129 TCGCACACTCATTTCATGGGTTGGCTTAG
*
33108729 GCATACAGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
33108756 CATACAAAGT
Statistics
Matches: 259, Mismatches: 75, Indels: 20
0.73 0.21 0.06
Matches are distributed among these distances:
157 7 0.03
158 133 0.51
159 115 0.44
160 4 0.02
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAATCGGATCGAGGGTTGCGGCAGCAGGATTGACAG
CACGCAGGGGGGACCAGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCTC
GCACACTCATTTCATGGGTTGGCTTAG
Found at i:33108766 original size:26 final size:26
Alignment explanation
Indices: 33108729--33108781 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
33108719 GTTGGCTTAG
* *
33108729 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAAAGTTCATTCCAGGTCTAA
*
33108755 GCATACAAAGTTCATTCCCGGTCTAA
1 GCATACAAAGTTCATTCCAGGTCTAA
33108781 G
1 G
33108782 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCAGGTCTAA
Found at i:33110020 original size:21 final size:21
Alignment explanation
Indices: 33109996--33110038 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
33109986 CAAGACCGGC
*
33109996 AGCGAGATCGGTAGCATGTAG
1 AGCGAGATCAGTAGCATGTAG
33110017 AGCGAGATCAGTAGCATGTAG
1 AGCGAGATCAGTAGCATGTAG
33110038 A
1 A
33110039 CTTGTGCATT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.33, C:0.14, G:0.35, T:0.19
Consensus pattern (21 bp):
AGCGAGATCAGTAGCATGTAG
Found at i:33110152 original size:26 final size:26
Alignment explanation
Indices: 33110115--33110167 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33110105 GTTGACTTAG
*
33110115 GCATACGGAGTTCA-TCCCGAGTCTAA
1 GCATACGAAGTTCATTCCC-AGTCTAA
33110141 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
33110167 G
1 G
33110168 ATTGGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:33110827 original size:171 final size:171
Alignment explanation
Indices: 33110368--33111329 Score: 567
Period size: 171 Copynumber: 5.7 Consensus size: 171
33110358 CCGACAGAAT
* * * * * *
33110368 GCAGAAGGGGATTGGGCCGGTCCCCGGCTTGCGCATTATGCCTCTCCGACTGGCTCAGCGCCCAC
1 GCAGAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTGAGCGCCCGC
* * * *
33110433 ACGCTCATTTTATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAG-ATCAGACCGGAT
66 ACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCA-TCCCAGTCTAAGCACCAGACCGGAC
* *
33110497 CGAGGGTTGCGGTAGTAGGACCAGCAGCAGGATTGGCAGCAC
130 CGAGGGTTGCGGTAGCAGGACCAGCAGCAGGATTGACAGCAC
* ** * * * * *
33110539 GTAGAGGGGGATCGAACCGATCCCCGGCTTGCGCATTCTACCTCTTCGGCCGGTTGAGCGCCCGC
1 GCAGAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTGAGCGCCCGC
* * * * * *
33110604 ACACTCGTTTCATGAGTTGGCTTAGGCATA-AGGAGTTCATTCCATGTCTAAGCCCCAG-CTGGA
66 ACGCTCGTTTCATGGGTTGACTTAGGCATACA-GAGTTCATCCCA-GTCTAAGCACCAGACCGGA
* *
33110667 CCGAGGGTTGTGGTAGCAGGACC-GACAGCGGGATTGACAGCAC
129 CCGAGGGTTGCGGTAGCAGGACCAG-CAGCAGGATTGACAGCAC
* *
33110710 GCAGAGGGGGATCGGGCTGATCCCCGGCCTGCGCATTATGCCTCTCCGACCGGCTGAGCGCCCGC
1 GCAGAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTGAGCGCCCGC
* * **
33110775 ACGCTCGTTTCATGGGTTGATTTAGGCATACAAAGTTCATCCCTAGTCTAAGCATATGGAGTTCA
66 ACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCC-AGTCTAAGC--A-CCAG---A
* * * * * * **** * * **
33110840 TTCCCGG-TCTAAGATCGAACTGG-ACCGAGGGTTGTGGCAGTAGGATCGGTAGCAC
124 ---CCGGACCGAGGGTTG--C-GGTAGC-A-GG-ACCAGCAGCAGGATTGACAGCAC
* * * * * * * * *
33110895 GCAGA-GGGGATCAGGCTGATCCCCGGCTTGTGCATTCTGCCTCTCTGGCCGGTTGAGTGCCCAC
1 GCAGAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTGAGCGCCCGC
* * * * * * * *
33110959 ACGCCCGTTTCGTGGGTTGGCTTAGGTATACGGAGTTCATTCCATGTCTAAGCCCCAG-TCGGAC
66 ACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCA-GTCTAAGCACCAGACCGGAC
* **
33111023 CGAGAGTT---GT----GGA--AGC-G--GGACCGACAGCAC
130 CGAGGGTTGCGGTAGCAGGACCAGCAGCAGGATTGACAGCAC
* * * * * *
33111053 GCACAGGGGGA-CTGGACTGATCCCCGGCTTGCACATTATGCCTCTCCGACCGGCTCAGTGCCCG
1 GCAGAGGGGGATC-GGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTGAGCGCCCG
* * * * * **
33111117 CACGCTCATTTCGTGGGTTGACTTATGCATACAGAGTTCATTCCCCA-TCTAAG-ATCGGACCAA
65 CACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCA-T-CCCAGTCTAAGCACCAGACCGG
* *
33111180 AACGAGGG-T----T-GC--G---A-CAGCAGGATTGACAGCAG
128 ACCGAGGGTTGCGGTAGCAGGACCAGCAGCAGGATTGACAGCAC
* * * * * * ** *
33111212 GTAG-GGGGGATCGGGCCGATCCTCAGCTTGCAC-TTTTTCTCTCTCCGGTCGGTTGAGCGCCCG
1 GCAGAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTATGC-CTCTCCGACCGGCTGAGCGCCCG
* ** *
33111275 CACGCTCGTTTCGTGGGTTGGGTTAGGCATACAGAGTTCATTCCATGTCTAAGCA
65 CACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCA-GTCTAAGCA
33111330 TACAGAGTTC
Statistics
Matches: 608, Mismatches: 142, Indels: 94
0.72 0.17 0.11
Matches are distributed among these distances:
156 4 0.01
157 8 0.01
158 102 0.17
159 107 0.18
160 2 0.00
161 5 0.01
164 2 0.00
169 1 0.00
170 6 0.01
171 228 0.38
172 5 0.01
174 5 0.01
175 3 0.00
180 5 0.01
181 5 0.01
182 2 0.00
183 4 0.01
184 95 0.16
185 18 0.03
186 1 0.00
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.23
Consensus pattern (171 bp):
GCAGAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTGAGCGCCCGC
ACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCAGTCTAAGCACCAGACCGGACC
GAGGGTTGCGGTAGCAGGACCAGCAGCAGGATTGACAGCAC
Found at i:33110996 original size:685 final size:690
Alignment explanation
Indices: 33109376--33111328 Score: 2134
Period size: 685 Copynumber: 2.8 Consensus size: 690
33109366 CCTCTCTGGT
* * * *
33109376 CGGCTGTGCGCCCGGACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCCA
1 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTA
* * * * * *
33109441 AGCATGCGGAGTTCATTCCTAGTCTAAGATC-ACACCGGATCGAGGGTTGCAGCAGCAGGATCGG
66 AGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACTGGACCGAGGGTTGCGGCAGTAGGATCGG
* * * * * * *
33109505 CAGCACGTAGGGGGGTAAGACCGATCCCCAGCTTGCGCATTTTGCCTCTCCAATCGGCTGAGTGC
130 TAGCACGCAGGGGGATCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCAATCGGCTGAGTGC
*
33109570 TCGA-ACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTC
195 -CCACACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTC
* *
33109634 GGACCGAGGGTTGAGGTAGTC-GGACTGACAGCACGCAG-AGGAGGACTGGGCCGGTCCCCGGCC
259 GGACCGAGGGTTGAGGTAG-CGGGACCGACAGCACGCAGAAGG-GGACTGGGCCGGTCCCCGGCT
* * * *
33109697 TGCGCATTATGCCTATCCGA-TCGGCTC-GACACCCGTACACTCATTTTGTGGGTTGACTTAGGC
322 TGCGCATTATGCCTCTCCGACT-GGCTCAG-CGCCCGCACGCTCATTTTGTGGGTTGACTTAGGC
* * * *
33109760 ATACAGAGGTCATTCCCAGTCTAAGATCAGACTGGACCAAACCAAAGGTTGCGGCAGTAGGACCA
385 ATACAGAGTTCATTCCCAGTCTAAGATCAGACCGG----AA-CGAGGGTTGCGG-AGTAGGACCA
* * * * * * *
33109825 GCAGTAGGATTGGCAGCACGCAGGAGGGACCGAGCCAATCCCCGGCTTGCGTATTTTGCCTCTCC
444 GCAGCAGGATTGGCAGCACGTAGGGGGGATCGAGCCGATCCCCGGCTTGCGCATTTTACCTCTCC
* * ** * * *
33109890 AGCTGACTAAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
509 GGCCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGT
* * * ** * *
33109955 CTAAGCTACAGCCGGTCGAGGGTTGTCACAGCAAGACCGGCAGCGAGATCGGTAGCATGTAGAGC
574 CTAAGCCACAGCCGGCCGAGGGTTGTCACAGCAAGACCGACAGCGAGATCGACAGCACGCAGAGC
** * * * *
33110020 GAGATCAGTAGCATGTAGACTTGTGCATTATGCCTCTTCGGTGGACGTCTCCGAT
639 GAGATCAGTAGCATGTAGACCCGTGC--TATGCCTATTC-ATGGACCTCTCCGAC
* *
33110075 CGGCTGAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATCCCGAGTCTA
1 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTA
* * * * * * *
33110140 AGCATACGAAGTTCATTCCCAGTCTAAGATTGGA-TCAGACCGAGGGTTACGACAGTAGGATCGA
66 AGCATACGGAGTTCATTCCCAGTCTAAGATCGAACT-GGACCGAGGGTTGCGGCAGTAGGATCGG
* * * * * *
33110204 TACCACACAGGGGGGA-CAGGGCCGATCCCCGGTTTACGCATTCTACCTCTCCAATCGGCTGAGC
130 TAGCACGCA-GGGGGATCA-GGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCAATCGGCTGAGT
* ** * * * *
33110268 ACCTGCACACCCATTTCATGGGTTGGCTTAGGCGTAGGGAGTTCATTCCATGTCTAAGCCCCAGT
193 GCCCACACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGT
* * * *
33110333 CGGACTGAGGGTTGAGGTAGCGGGACCGACAGAATGCAGAAGGGGATTGGGCCGGTCCCCGGCTT
258 CGGACCGAGGGTTGAGGTAGCGGGACCGACAGCACGCAGAAGGGGACTGGGCCGGTCCCCGGCTT
* *
33110398 GCGCATTATGCCTCTCCGACTGGCTCAGCGCCCACACGCTCATTTTATGGGTTGACTTAGGCATA
323 GCGCATTATGCCTCTCCGACTGGCTCAGCGCCCGCACGCTCATTTTGTGGGTTGACTTAGGCATA
*
33110463 CAGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGTAGTAGGACCAGCAGCAGG
388 CAGAGTTCATTCCCAGTCTAAGATCAGACCGGAACGAGGGTTGCGG-AGTAGGACCAGCAGCAGG
* * *
33110528 ATTGGCAGCACGTAGAGGGGGATCGAACCGATCCCCGGCTTGCGCATTCTACCTCTTCGGCCGGT
452 ATTGGCAGCACGTAG-GGGGGATCGAGCCGATCCCCGGCTTGCGCATTTTACCTCTCCGGCCGGT
* * *
33110593 TGAGCGCCCGCACACTCGTTTCATGAGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCC
516 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCC
* * *** * * * * *
33110658 CCAGCTGGACCGAGGGTTGTGGTAGCAGGACCGACAGCGGGATTGACAGCACGCAGAGGGGGATC
581 ACAGCCGG-CCGAGGGTTGTCACAGCAAGACCGACAGCGAGATCGACAGCACGCAGAGCGAGATC
* ** *
33110723 -G-GGC-TG-ATCCCCG-GC-CTGCGC-ATT-AT-G-CCTCTCCGAC
645 AGTAGCATGTAGACCCGTGCTATGC-CTATTCATGGACCTCTCCGAC
* * ** *
33110760 CGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGATTTAGGCATACAAAGTTCATCCCTAGTCTA
1 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTA
* * *
33110825 AGCATATGGAGTTCATTCCCGGTCTAAGATCGAACTGGACCGAGGGTTGTGGCAGTAGGATCGGT
66 AGCATACGGAGTTCATTCCCAGTCTAAGATCGAACTGGACCGAGGGTTGCGGCAGTAGGATCGGT
* * **** *
33110890 AGCACGCAGAGGGGATCAGGCTGATCCCCGGCTTGTGCATTCTGCCTCTCTGGCCGGTTGAGTGC
131 AGCACGCAG-GGGGATCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCAATCGGCTGAGTGC
* *
33110955 CCACACGCCCGTTTCGTGGGTTGGCTTAGGTATACGGAGTTCATTCCATGTCTAAGCCCCAGTCG
195 CCACACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCG
* * * * * * * *
33111020 GACCGAGAGTTGTGGAAGCGGGACCGACAGCACGCACAGGGGGACTGGACTGATCCCCGGCTTGC
260 GACCGAGGGTTGAGGTAGCGGGACCGACAGCACGCAGAAGGGGACTGGGCCGGTCCCCGGCTTGC
* * * * *
33111085 ACATTATGCCTCTCCGACCGGCTCAGTGCCCGCACGCTCATTTCGTGGGTTGACTTATGCATACA
325 GCATTATGCCTCTCCGACTGGCTCAGCGCCCGCACGCTCATTTTGTGGGTTGACTTAGGCATACA
* **
33111150 GAGTTCATTCCCCA-TCTAAGATCGGACCAAAACGAGGGTTGC-------G---A-CAGCAGGAT
390 GAGTTCATT-CCCAGTCTAAGATCAGACCGGAACGAGGGTTGCGGAGTAGGACCAGCAGCAGGAT
* * * * * * * *
33111203 TGACAGCAGGTAGGGGGGATCGGGCCGATCCTCAGCTTGCAC-TTTTTCTCTCTCCGGTCGGTTG
454 TGGCAGCACGTAGGGGGGATCGAGCCGATCCCCGGCTTGCGCATTTTAC-CTCTCCGGCCGGTTG
*
33111267 AGCGCCCGCACGCTCGTTTCGTGGGTTGGGTTAGGCATACA-GAGTTCATTCCATGTCTAAGC
518 AGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATA-AGGAGTTCATTCCATGTCTAAGC
33111329 ATACAGAGTT
Statistics
Matches: 1056, Mismatches: 180, Indels: 63
0.81 0.14 0.05
Matches are distributed among these distances:
671 4 0.00
672 93 0.09
673 21 0.02
674 1 0.00
677 1 0.00
684 1 0.00
685 367 0.35
686 8 0.01
687 1 0.00
689 5 0.00
690 1 0.00
692 2 0.00
693 3 0.00
694 2 0.00
695 43 0.04
696 103 0.10
697 42 0.04
699 116 0.11
700 237 0.22
701 5 0.00
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (690 bp):
CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTA
AGCATACGGAGTTCATTCCCAGTCTAAGATCGAACTGGACCGAGGGTTGCGGCAGTAGGATCGGT
AGCACGCAGGGGGATCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCAATCGGCTGAGTGCC
CACACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGG
ACCGAGGGTTGAGGTAGCGGGACCGACAGCACGCAGAAGGGGACTGGGCCGGTCCCCGGCTTGCG
CATTATGCCTCTCCGACTGGCTCAGCGCCCGCACGCTCATTTTGTGGGTTGACTTAGGCATACAG
AGTTCATTCCCAGTCTAAGATCAGACCGGAACGAGGGTTGCGGAGTAGGACCAGCAGCAGGATTG
GCAGCACGTAGGGGGGATCGAGCCGATCCCCGGCTTGCGCATTTTACCTCTCCGGCCGGTTGAGC
GCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCACAGC
CGGCCGAGGGTTGTCACAGCAAGACCGACAGCGAGATCGACAGCACGCAGAGCGAGATCAGTAGC
ATGTAGACCCGTGCTATGCCTATTCATGGACCTCTCCGAC
Found at i:33111337 original size:26 final size:26
Alignment explanation
Indices: 33111301--33111353 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
33111291 GTTGGGTTAG
33111301 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
33111327 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
33111353 G
1 G
33111354 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:33112054 original size:26 final size:26
Alignment explanation
Indices: 33112024--33112073 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
33112014 GTTGACTTAG
*
33112024 GCATAGGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
33112050 GCATACGGAGTTCATTCCCAGTCT
1 GCATACGGAGTTCATTCCCAGTCT
33112074 GAGATCGGAC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 18 0.82
27 4 0.18
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:33112338 original size:158 final size:156
Alignment explanation
Indices: 33112131--33112584 Score: 387
Period size: 158 Copynumber: 2.9 Consensus size: 156
33112121 AGAGGGATCA
* * * * * * *
33112131 AGCCGATCCCTGGCTTGCGCATTTTGCATCTCC-AGCCGATTGAGTGCCCGCA-CGTCCGTTTCA
1 AGCCAATCCCTAGCTTGCGCATTATGCCTCTCCGA-CCGACTCAGCGCCCGCAGC-T-CGTTTCA
** * * *
33112194 TGGGTTGGCTTAGGCATAGGTAGTTCATTCCATGTCTAAGCCCCAGTTC-GATCGAGGGTTGGGG
63 TGGGTTGGCTTAGGCATAGG-AGTTCATTCCATGTCTAAGCCCCA-ACCAGACCGAGGGTTGCGA
* * * *
33112258 CAGC-GGACCGACAGCATGCAGAGGGGGATCG
126 CAACAAGACCGACAGCACGCAG-GGGGGACCG
* * * * * *
33112289 GGCCAATCCCTGGCTTGCGCTTTATGCCTCTCCGATCGGCTCAGCGCCCGCATGCTCGTTTCGTG
1 AGCCAATCCCTAGCTTGCGCATTATGCCTCTCCGACCGACTCAGCGCCCGCA-GCTCGTTTCATG
* * ** *
33112354 GGTTGACTTAGGCATACAGAGTTCATTCCCA-GTCTAAGATCGAACCAGACCGAGGGTTGCGACA
65 GGTTGGCTTAGGCATA-GGAGTTCATT-CCATGTCTAAGCCCCAACCAGACCGAGGGTTGCGACA
* ** *
33112418 ACAAGATCGATGGCACGCAGGGGGGACCT
128 ACAAGACCGACAGCACGCAGGGGGGACCG
* * * * * * *
33112447 AGTCGATCCCTAGCTTGCGCATTCTGCCTCTCTGGCCGACTGAGCGCCCGCAGGCTCATTTCATG
1 AGCCAATCCCTAGCTTGCGCATTATGCCTCTCCGACCGACTCAGCGCCCGCA-GCTCGTTTCATG
* * * *
33112512 GGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAATCGGACCGAGGGTTGTGGCAA
65 GGTTGGCTTAGGCATA-GGAGTTCATTCCATGTCTAAGCCCCAACCAGACCGAGGGTTGCGACAA
*
33112577 CAGGACCG
129 CAAGACCG
33112585 GTAGTGAGAT
Statistics
Matches: 233, Mismatches: 55, Indels: 16
0.77 0.18 0.05
Matches are distributed among these distances:
157 4 0.02
158 210 0.90
159 18 0.08
160 1 0.00
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (156 bp):
AGCCAATCCCTAGCTTGCGCATTATGCCTCTCCGACCGACTCAGCGCCCGCAGCTCGTTTCATGG
GTTGGCTTAGGCATAGGAGTTCATTCCATGTCTAAGCCCCAACCAGACCGAGGGTTGCGACAACA
AGACCGACAGCACGCAGGGGGGACCG
Found at i:33112736 original size:329 final size:316
Alignment explanation
Indices: 33112050--33112742 Score: 750
Period size: 316 Copynumber: 2.2 Consensus size: 316
33112040 CCTAGTCTAA
* * * * * *** *
33112050 GCATACGGAGTTCATTCCCAGTCTGAGATCGGACC-GAACCGAGGGTTGCGACTGTAGGATCGAT
1 GCATACAGAGTTCATTCCCAGACTAAGATAGAACCAG-ACCGAGGGTTGCGACAACAAGATCGAT
* * * * * * * * * *
33112114 AGCACGTA-GAGGGATCAAGCCGATCCCTGGCTTGCGCATTTTGCATCTCCAGCCGATTGAGTGC
65 GGCACGCAGGGGGGACCTAGTCGATCCCTAGCTTGCGCATTCTGCATCTCCAGCCGACTGAGCGC
* * *
33112178 CCGCACGTCCGTTTCATGGGTTGGCTTAGGCATAGGTAGTTCATTCCATGTCTAAGCCCCAGTTC
130 CCGCACGTCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGATC
* * * * **
33112243 GATCGAGGGTTGGGGCAGCGGACCGACAGCATGCAGAGGGGGATCGGGCCAATCCCTGGCTTGCG
195 GACCGAGGGTTGGGGCAACGGACCGACAGCAAGCAGAGGGGGATCAGGCCAATCCCCAGCTTGCG
* * *
33112308 CTTTATGCCTCTCCGATCGGCTCAGCGCCCGCATGCTCGTTTCGTGGGTTGACTTAG
260 CATTATGCCTCTCCGATCGGCTCAACGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* *
33112365 GCATACAGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGACAACAAGATCGATG
1 GCATACAGAGTTCATTCCCAGACTAAGATAGAACCAGACCGAGGGTTGCGACAACAAGATCGATG
* **
33112430 GCACGCAGGGGGGACCTAGTCGATCCCTAGCTTGCGCATTCTGCCTCTCTGGCCGACTGAGCGCC
66 GCACGCAGGGGGGACCTAGTCGATCCCTAGCTTGCGCATTCTGCATCTCCAGCCGACTGAGCGCC
*
33112495 CGCA-GGCTCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA-ATC
131 CGCACGTC-CATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGATC
* * ***
33112558 GGACCGAGGGTTGTGGCAACAGGACCGGTAGTGAGATCGACAGCACGAATTGGGGGATCAGGTTG
195 -GACCGAGGGTTGGGGCAAC-GGACC-G-A--CAG--C-A-AGCA-G-A--GGGGGATCAGGCCA
* * *
33112623 ATCCCCAGCTTGTGCATTATGCCTCTCCGA-CTGGCTGAACGCCCGCACGCTGGTTTCGTGGGTT
246 ATCCCCAGCTTGCGCATTATGCCTCTCCGATC-GGCTCAACGCCCGCACGCTCGTTTCGTGGGTT
33112687 GACTTAG
310 GACTTAG
* **
33112694 GCATACAGAGTTCATTCCTAGACTAAGATTAG-ACTGGACCGAGGGTTGC
1 GCATACAGAGTTCATTCCCAGACTAAGA-TAGAACCAGACCGAGGGTTGC
33112743 AGCAGTAGGA
Statistics
Matches: 313, Mismatches: 46, Indels: 24
0.82 0.12 0.06
Matches are distributed among these distances:
315 65 0.21
316 117 0.37
317 5 0.02
318 1 0.00
319 1 0.00
321 2 0.01
323 1 0.00
324 1 0.00
325 3 0.01
326 1 0.00
327 1 0.00
328 1 0.00
329 112 0.36
330 2 0.01
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.23
Consensus pattern (316 bp):
GCATACAGAGTTCATTCCCAGACTAAGATAGAACCAGACCGAGGGTTGCGACAACAAGATCGATG
GCACGCAGGGGGGACCTAGTCGATCCCTAGCTTGCGCATTCTGCATCTCCAGCCGACTGAGCGCC
CGCACGTCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGATCG
ACCGAGGGTTGGGGCAACGGACCGACAGCAAGCAGAGGGGGATCAGGCCAATCCCCAGCTTGCGC
ATTATGCCTCTCCGATCGGCTCAACGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
Found at i:33112894 original size:26 final size:26
Alignment explanation
Indices: 33112865--33112917 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
33112855 GTTGACTTAG
33112865 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCGA-GTCTAA
33112891 GCATACGGAGTTCATTCCGAGTCTAA
1 GCATACGGAGTTCATTCCGAGTCTAA
33112917 G
1 G
33112918 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCGAGTCTAA
Found at i:33113280 original size:25 final size:25
Alignment explanation
Indices: 33113246--33113296 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
33113236 GTTGACTTAG
33113246 GCATACGGAGTTCATCCCAGTCTAA
1 GCATACGGAGTTCATCCCAGTCTAA
* *
33113271 GCATGCGGAGTTCATTCCAGTCTAA
1 GCATACGGAGTTCATCCCAGTCTAA
33113296 G
1 G
33113297 ATCGAATCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (25 bp):
GCATACGGAGTTCATCCCAGTCTAA
Found at i:33114479 original size:26 final size:26
Alignment explanation
Indices: 33114450--33114502 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33114440 GTTAACTTGG
*
33114450 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGATCATTCCC-AGTCTAA
33114476 GCATACGGAGATCATTCCCAGTCTAA
1 GCATACGGAGATCATTCCCAGTCTAA
33114502 G
1 G
33114503 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGATCATTCCCAGTCTAA
Found at i:33114980 original size:26 final size:26
Alignment explanation
Indices: 33114950--33115002 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
33114940 GTTGGCTTAG
33114950 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
**
33114976 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
33115002 G
1 G
33115003 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:33115367 original size:26 final size:26
Alignment explanation
Indices: 33115331--33115383 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
33115321 GTTGACTTAG
*
33115331 GCATACGGAGTTCATCCCCAGTTTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
33115357 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
33115383 G
1 G
33115384 ATCAAACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:33115861 original size:26 final size:26
Alignment explanation
Indices: 33115825--33115877 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33115815 GTTGGCTTAG
*
33115825 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
33115851 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
33115877 G
1 G
33115878 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:33116583 original size:26 final size:25
Alignment explanation
Indices: 33116546--33116624 Score: 86
Period size: 26 Copynumber: 3.0 Consensus size: 25
33116536 GTTGACTTAG
33116546 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACA-AGTTCATCCCCAGTCTAA
* *
33116572 GCATACATAGTTCATCCCTAATCTAA
1 GCATACA-AGTTCATCCCCAGTCTAA
* * *
33116598 GCATATGAAGTTAATTCCCAGTCTAA
1 GCATA-CAAGTTCATCCCCAGTCTAA
33116624 G
1 G
33116625 ATCAGACCAG
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
26 43 0.98
27 1 0.02
ACGTcount: A:0.33, C:0.25, G:0.14, T:0.28
Consensus pattern (25 bp):
GCATACAAGTTCATCCCCAGTCTAA
Found at i:33118014 original size:158 final size:159
Alignment explanation
Indices: 33117513--33118020 Score: 389
Period size: 158 Copynumber: 3.2 Consensus size: 159
33117503 TAAGATCAGA
* ** * * * * *
33117513 CCAGATCGAGGGTTGCAGCAGCAGGATCAACAGCACGCAG-GGGGGACCGGGCCGATCCCCGACT
1 CCAGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGAGACCAGACCGATCCCCGGCT
* * * ** * * * * * * * ** *
33117577 TGCACATTCTGCCTCTCTGGTCGGCTTAGCGCCTGCACTCCCATTTTGTGGGTTTGCTTAGGCAT
66 TGCACATTATACCTCTCCGACCGACTCAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCAT
* * *
33117642 AGGGAGTTCATTCCATGTCTAAGCCCCAG
131 ACGGAGTTCATTCCATGTCTAAGTCCTAG
* * * * * **
33117671 CCAGACCGAGGGTTGTGGCAGCGGGACCAATAGCACGCAGAGGGAGACCGGATTGATCCCCGGCT
1 CCAGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGAGACCAGACCGATCCCCGGCT
** * * * * * * *
33117736 TGTGCATTATGCCTCTCCGACTGGCTCAGCACCCGTATGCTCGTTTCGTGGGTTGACTTAGGCAT
66 TGCACATTATACCTCTCCGACCGACTCAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCAT
*
33117801 ACGGAGTTCATTCCCA-GTCTAAGAT--TGG
131 ACGGAGTTCATT-CCATGTCTAAG-TCCTAG
* * * ** * * * **
33117829 ATCAGATCGAGAGTTGCAGCAGTAGGATCGACAGCATGCAGAGAGGA-CCCAG-CCGATCCGTGG
1 -CCAGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAG-GGAGACCAGACCGATCCCCGG
* * * * * * *
33117892 CTTGCATATTCTACCTTTCCGGCCGATTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGC
64 CTTGCACATTATACCTCTCCGACCGACTCAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGC
*
33117957 ATACGAAGTTCATTCCATGTCTAAGTCCTAG
129 ATACGGAGTTCATTCCATGTCTAAGTCCTAG
33117988 CCAGACCGAGGGTTGTGGCAGCAGGATCGACAG
1 CCAGACCGAGGGTTGTGGCAGCAGGATCGACAG
33118021 TGGGATCGAT
Statistics
Matches: 268, Mismatches: 74, Indels: 16
0.75 0.21 0.04
Matches are distributed among these distances:
157 4 0.01
158 138 0.51
159 120 0.45
160 6 0.02
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (159 bp):
CCAGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGAGACCAGACCGATCCCCGGCT
TGCACATTATACCTCTCCGACCGACTCAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCAT
ACGGAGTTCATTCCATGTCTAAGTCCTAG
Found at i:33118165 original size:26 final size:26
Alignment explanation
Indices: 33118136--33118191 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
33118126 TGGGTTGACT
33118136 TAAGCATACGGAGTTCATCCCCAGTC
1 TAAGCATACGGAGTTCATCCCCAGTC
*
33118162 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATCCCCAGTC
33118188 TAAG
1 TAAG
33118192 GTCAGATCGG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.25
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATCCCCAGTC
Found at i:33118479 original size:685 final size:683
Alignment explanation
Indices: 33117233--33118666 Score: 1723
Period size: 685 Copynumber: 2.1 Consensus size: 683
33117223 CTCTGGCTGG
*
33117233 TTGAGCACCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACAAAGTTCATTCCATGTCTAAGC
1 TTGAGCACCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATAC-AAGTTCATTCCATGTCTAAGC
** * ** * * *
33117298 CCCAGCTGGATCGAGGATTATGGCAGCAGGACCGGTAGCGGAATCGGTAGGACACAGAAGAGAAC
65 CCCAGCCAGACCGAGGATTATGGCAGCAGGACCGACAGCGGAATCGATAGCACAAAGAAGAGAAC
* * * * * *** * * * *
33117363 CGGGTTGATCCCCGGCTTACGTATTTTGCCTCTCCGTTCGACCTCTTTGGCTGGTTGAGTGCCCG
130 CGAGCTGATCCCCGACTTACGCATTATGCCTCTCCGTTCGACCTCTCCAGCTAGCTAAGAGCCCG
* * * * * * *
33117428 CATGCTCGTTTTATGGGTTGACTTAGGTATATGGAGTTTATCCCCAGTCTAAGCATACGAATTTC
195 CACGCTCGTTTCATGGGTTGACTTAAGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTC
** * * *
33117493 ATTTTCAGTCTAAGATCAGACCAGATCGAGGGTTGCAGCAGCAGGATCAACAGCACGCAGGGGGG
260 ATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAACAGGATCAACAGCACGCAAGGGGG
* * ** *
33117558 ACCGGGCCGATCCCCGACTTGCACATTCTGCCTCTCTGGTCGGCTTAGCGCCTGCACTCCCATTT
325 ACCGGGCCGATCCCCGACTGGCACATTCTGCCTCTCCGACCGGCTTAGCGCCTGCACGCCCATTT
** *
33117623 TGTGGGTTTGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTG
390 CATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTG
* * * *
33117688 GCAGCGGGACCAATAGCACGCAGAGGGAGACCGGATTGATCCCCGGCTTGTGCATTATGCCTCTC
455 GCAGCGGGACCAACAGCACGCAGAGGGAGACCGGATCGATCCCCGACTTGCGCATTATGCCTCTC
* * * *
33117753 CGACTGGCTCAGCACCCGTATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
520 CGACTAGCCCAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
*
33117818 TCTAAGATTGGATCAGATCGAGAGTTGC-AGCAGTAGGATCGAC-AGCATGCA-GAGAGGACCCA
585 TCTAAGATTGGATCAGATCGAGAGTTGCGA-CAGTAGGATCGACAAAC-T-CATGAG-GGACCCA
*** * * *
33117880 GCCGATCCGTGGCTTGCATATTCTACCTTTCCGGCCGA
646 GCCGATCCCCAGCTTGCACATTCTACCTCTCCGACCGA
* * *
33117918 TTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGT
1 TTGAGCACCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATAC-AAGTTCATTCCATGTCTAAGC
* * * * * * * *
33117983 CCTAGCCAGACCGAGGGTTGTGGCAGCAGGATCGACAGTGGGATCGATAGCACGTAAAG-GGGGA
65 CCCAGCCAGACCGAGGATTATGGCAGCAGGACCGACAGCGGAATCGATAGCAC--AAAGAAGAGA
** * *
33118047 A-CGAGCTGATCCCCGACTTGTGCATTATGCCTCTCCGTTCGGCCTCTCCAGTTAGCTAAGAGCC
128 ACCGAGCTGATCCCCGACTTACGCATTATGCCTCTCCGTTCGACCTCTCCAGCTAGCTAAGAGCC
* * *
33118111 CGTACGCTCGTTTCGTGGGTTGACTTAAGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGT
193 CGCACGCTCGTTTCATGGGTTGACTTAAGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGT
* * * * ** * *
33118176 TCATTCCCAGTCTAAGGTCAGATCGGACCGAGGTTTGTGGCAATAGGATCGACAGCACGCAAGGG
258 TCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAACAGGATCAACAGCACGCAAGGG
* * * * *
33118241 GGATCGGGCCGATCCCCGACTGGCGCATTCTGCCTCTCCGACCGG-TTGAGTGCCTGTACGCCTA
323 GGACCGGGCCGATCCCCGACTGGCACATTCTGCCTCTCCGACCGGCTT-AGCGCCTGCACGCCCA
** *
33118305 TTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGGATCGAGGGTT
387 TTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTT
* * **
33118370 GTGGCTGTGGGACCAACAGCACTTAGAAGGG-GACC-GAGTCGATCCCCGACTTGCGCATTATGC
452 GTGGCAGCGGGACCAACAGCACGCAG-AGGGAGACCGGA-TCGATCCCCGACTTGCGCATTATGC
* **
33118433 CTCTCCGGCTAGCCCAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
515 CTCTCCGACTAGCCCAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
* * * * *
33118498 GCCAGTCTAAGATTGGATCGGATCGAGGGTTGCGACAGTAGGATCGACAAACTCATGAGGGATCG
580 CCCAGTCTAAGATTGGATCAGATCGAGAGTTGCGACAGTAGGATCGACAAACTCATGAGGGACCC
* * * * *
33118563 GGCTGATCCCCAGCTTGCGCATTCTGCCTCTCCGATCGA
645 AGCCGATCCCCAGCTTGCACATTCTACCTCTCCGACCGA
* *
33118602 CTGAGCACCCGTACGCTAGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGC
1 TTGAGCACCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACA-AGTTCATTCCATGTCTAAGC
33118667 ATACGGAGTT
Statistics
Matches: 627, Mismatches: 113, Indels: 19
0.83 0.15 0.03
Matches are distributed among these distances:
683 1 0.00
684 96 0.15
685 516 0.82
686 11 0.02
687 3 0.00
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (683 bp):
TTGAGCACCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACAAGTTCATTCCATGTCTAAGCC
CCAGCCAGACCGAGGATTATGGCAGCAGGACCGACAGCGGAATCGATAGCACAAAGAAGAGAACC
GAGCTGATCCCCGACTTACGCATTATGCCTCTCCGTTCGACCTCTCCAGCTAGCTAAGAGCCCGC
ACGCTCGTTTCATGGGTTGACTTAAGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCA
TTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAACAGGATCAACAGCACGCAAGGGGGA
CCGGGCCGATCCCCGACTGGCACATTCTGCCTCTCCGACCGGCTTAGCGCCTGCACGCCCATTTC
ATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGG
CAGCGGGACCAACAGCACGCAGAGGGAGACCGGATCGATCCCCGACTTGCGCATTATGCCTCTCC
GACTAGCCCAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
CTAAGATTGGATCAGATCGAGAGTTGCGACAGTAGGATCGACAAACTCATGAGGGACCCAGCCGA
TCCCCAGCTTGCACATTCTACCTCTCCGACCGA
Found at i:33118638 original size:157 final size:156
Alignment explanation
Indices: 33118165--33118665 Score: 478
Period size: 159 Copynumber: 3.2 Consensus size: 156
33118155 CCCAGTCTAA
* * *
33118165 GCATACGGAGTTCATTCCCA-GTCTAAGGTCAGATCGGACCGAGGTTTGTGGCAATAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAA-GTCAGATCGGATCGAGGGTTGTGGCAGTAGGATCGAC
* * * * **
33118229 AGCACGCAAGGGGGATCGGGCCGATCCCCGACTGGCGCATTCTGCCTCTCCGACCGGTTGAGTGC
64 AGCACTC-AGAGGGATCGGGCTGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGACTGAGTGC
*
33118294 CTGTACGCCTA-TTTCATGGGTTGGCTTAG
128 CCGTACG-CTAGTTTCATGGGTTGGCTTAG
* * * * * * *
33118323 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCT-GGATCGAGGGTTGTGGCTGTGGGACCAAC
1 GCATACGGAGTTCATTCCATGTCTAAG--TCAGATCGGATCGAGGGTTGTGGCAGTAGGATCGAC
* * * * * * **
33118387 AGCACTTAGAAGGGGACCGAG-TCGATCCCCGACTTGCGCATTATGCCTCTCCG-GCTAGCCCAG
64 AGCACTCAG-A-GGGATCGGGCT-GATCCCCGACTTGCGCATTCTGCCTCTCCGACCGA-CTGAG
* * * *
33118450 TGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
125 TGCCCGTACGCTAGTTTCATGGGTTGGCTTAG
** * *
33118482 GCATACGGAGTTCATTGCCA-GTCTAAGATTGGATCGGATCGAGGGTTGCGACAGTAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAG-TCAGATCGGATCGAGGGTTGTGGCAGTAGGATCGAC
* * **
33118546 A-AACTCATGAGGGATCGGGCTGATCCCC-AGCTTGCGCATTCTGCCTCTCCGATCGACTGAGCA
64 AGCACTCA-GAGGGATCGGGCTGATCCCCGA-CTTGCGCATTCTGCCTCTCCGACCGACTGAGTG
33118609 CCCGTACGCTAGTTTCATGGGTTGGCTTAG
127 CCCGTACGCTAGTTTCATGGGTTGGCTTAG
*
33118639 GCATACAGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
33118666 CATACGGAGT
Statistics
Matches: 271, Mismatches: 57, Indels: 31
0.75 0.16 0.09
Matches are distributed among these distances:
156 4 0.01
157 91 0.34
158 61 0.23
159 112 0.41
160 3 0.01
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCATGTCTAAGTCAGATCGGATCGAGGGTTGTGGCAGTAGGATCGACAG
CACTCAGAGGGATCGGGCTGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGACTGAGTGCCCG
TACGCTAGTTTCATGGGTTGGCTTAG
Found at i:33118669 original size:26 final size:25
Alignment explanation
Indices: 33118639--33118690 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
33118629 GTTGGCTTAG
33118639 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCA-GTCTAA
*
33118665 GCATACGGAGTTCATTCCAGTCTAA
1 GCATACAGAGTTCATTCCAGTCTAA
33118690 G
1 G
33118691 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (25 bp):
GCATACAGAGTTCATTCCAGTCTAA
Found at i:33125205 original size:26 final size:26
Alignment explanation
Indices: 33125175--33125227 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
33125165 GTTGACTTAG
33125175 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
33125201 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
33125227 G
1 G
33125228 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:33125675 original size:158 final size:157
Alignment explanation
Indices: 33125201--33125702 Score: 545
Period size: 158 Copynumber: 3.2 Consensus size: 157
33125191 CCCAGTCTAA
* *
33125201 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGA-CTGGATCGAGGGTTGCGGCAGCAGGATCGG
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGATC-GGAACGAGGGTTGCGGCAGCAGGATCGA
* * * **
33125264 CAGCACGCAGGGGGGACTGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCAACTGAGCG
64 CAGTACGGAGGGGGGAC-GGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCG
*
33125329 CCCGTACGCCCAGTTT-GTGGGTTGGCTTAG
128 CCCGTACGCTC-GTTTCGTGGGTTGGCTTAG
* ** * * *
33125359 GCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCT-GGAACGAGGGTTGTGGCAGC-GAGACTGG
1 GCATACGGAGTTCATTCCATGTCTAAGATC-AGATCGGAACGAGGGTTGCGGCAGCAG-GA-T-C
* * * *
33125422 GAACATGTA--GA-GGGGGACCGGGCCGATCCCTGGCTTGCGCATTATGCCTCTCCGATCGGCTC
62 G-ACA-GTACGGAGGGGGGA-CGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTG
* * * *
33125484 AGCGCCCGTACACTCATTTCTTGGGTTGACTTAG
124 AGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAG
*
33125518 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGATCGGAACGAGGGTTGCGGCAGCAGGATCGAC
** * * *
33125582 AGTACGGAGGGGGGATCGGGTCGATCCCCATCTTACGCATTCTGCCTCTCCGGTCGGCTGAGAGC
65 AGTACGGAGGGGGGA-CGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGC
* *
33125647 CCGCATGCTCGTTTCGTGGGTTGGCTTAG
129 CCGTACGCTCGTTTCGTGGGTTGGCTTAG
*
33125676 GCATACAGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
33125703 CATATGGAGT
Statistics
Matches: 281, Mismatches: 46, Indels: 34
0.78 0.13 0.09
Matches are distributed among these distances:
155 3 0.01
156 3 0.01
157 10 0.04
158 141 0.50
159 113 0.40
160 7 0.02
161 2 0.01
162 2 0.01
ACGTcount: A:0.19, C:0.27, G:0.32, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGATCGGAACGAGGGTTGCGGCAGCAGGATCGACA
GTACGGAGGGGGGACGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCC
GTACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:33125705 original size:26 final size:26
Alignment explanation
Indices: 33125676--33125727 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
33125666 GTTGGCTTAG
33125676 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
**
33125702 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
33125728 TATCGGACCG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:33125885 original size:193 final size:195
Alignment explanation
Indices: 33125570--33126080 Score: 584
Period size: 193 Copynumber: 2.7 Consensus size: 195
33125560 GGGTTGCGGC
* * * *
33125570 AGCAGGATCGACAGTACGGAGGGGGGATCGGGTCGATCCCCATCTTACGCATTCTGCCTCTCCGG
1 AGCAGGATCGACAGCACGAAGGGGGGATCGGGTCGATCCCCAGCTTACGCATTCTACCTCTCCGG
* *
33125635 TCGGCTGAGAGCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCT
66 CCGGCTGAGAGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCT
*
33125700 AAGCATATGGAGTTCATTCCCAGTCTAATATCGGACCGGACCGAGGGTTGTGGCAGCAGGACAAA
131 AAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCAGGACAAA
* *
33125765 AGCAGGATCGACAGCACGTAAGGGGGGATCGGG-CTGATCCTC-GCTTACGCATTCTACCT-TTC
1 AGCAGGATCGACAGCACG-AAGGGGGGATCGGGTC-GATCCCCAGCTTACGCATTCTACCTCTCC
* * * *
33125827 -GCCGGTTGAGTGCCCGCACGTTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
64 GGCCGGCTGAGAGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGT
* * * * **
33125891 CTAAGCATATGGAGTTCATTCCCGGTCTAAGATCGGACCGGACCAAAGGTTGCGATAGC--GA-A
129 CTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCAGGACA
**
33125953 TC
194 AA
* * * * * * * *
33125955 AGCA-G--C-A-TG--C-AAGGGGGGACCGAGTCGATCCCCGGCTTGCACATTCTGCCTCTTCGG
1 AGCAGGATCGACAGCACGAAGGGGGGATCGGGTCGATCCCCAGCTTACGCATTCTACCTCTCCGG
* * * * * *
33126012 CCGACTGAGCGCTCGTACGCTCGTTTCGTGGGTTGACTAAGGCATACAGAGTTCATTCCATGTCT
66 CCGGCTGAGAGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCT
33126077 AAGC
131 AAGC
33126081 CCCAGTCGGA
Statistics
Matches: 273, Mismatches: 37, Indels: 23
0.82 0.11 0.07
Matches are distributed among these distances:
181 18 0.07
182 15 0.05
183 4 0.01
184 61 0.22
185 1 0.00
186 1 0.00
187 1 0.00
189 1 0.00
190 5 0.02
191 2 0.01
193 110 0.40
194 2 0.01
195 33 0.12
196 19 0.07
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (195 bp):
AGCAGGATCGACAGCACGAAGGGGGGATCGGGTCGATCCCCAGCTTACGCATTCTACCTCTCCGG
CCGGCTGAGAGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCT
AAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCAGGACAAA
Found at i:33125905 original size:26 final size:26
Alignment explanation
Indices: 33125869--33125921 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
33125859 GTTGGCTTAG
*
33125869 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCAGGTCTAA
* *
33125895 GCATATGGAGTTCATTCCCGGTCTAA
1 GCATACGGAGTTCATTCCAGGTCTAA
33125921 G
1 G
33125922 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAGGTCTAA
Found at i:33126260 original size:26 final size:26
Alignment explanation
Indices: 33126224--33126275 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
33126214 TTGACTTACA
33126224 CATACGGAGTTCATCCCCAGTCTAAG
1 CATACGGAGTTCATCCCCAGTCTAAG
* * *
33126250 CATATGGAGTTCATTCCTAGTCTAAG
1 CATACGGAGTTCATCCCCAGTCTAAG
33126276 ATCGGATCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAGTCTAAG
Found at i:33126568 original size:158 final size:157
Alignment explanation
Indices: 33126375--33126749 Score: 411
Period size: 158 Copynumber: 2.4 Consensus size: 157
33126365 CCGGTTGAGT
* *
33126375 GCCCGCACGC-CTGTTTCATGGGTTGGCTTAGGCATAGGGATTTCATTCCATGTCTAAGCCCTGG
1 GCCCGCACGCTC-GTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCC-GG
* * * * * *
33126439 -TCGGACCTAGGGTTGTGGCAGCGGGACCGACAGCACGTATAGGGGGATCGGGTCGATCCCC-GA
64 ATCAGACCGAGGGTTGCGGCAGCAGGACCGACAGCACGTA-AGGGGGATCAGGTCAATCCCCAG-
*
33126502 CTTGCCCATTATGCCTCT-T-CAGTAGCTCAAC
127 CTTGCACATTATGCCTCTCTGCAG--GCTCAAC
** * * * * **
33126533 GCCCGCACGCTCGTTTTGTGGGTTGACTTATGCATACAGAGTTCATTCCCA-GTGTAAGATCGGA
1 GCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCGGA
* *
33126597 TCAGACCGAGGGTTGCGGTAGCAGGATCGACAGCACGTAAGGGGGATCAGGTCAATCCCCAGCTT
65 TCAGACCGAGGGTTGCGGCAGCAGGACCGACAGCACGTAAGGGGGATCAGGTCAATCCCCAGCTT
* * * * * *
33126662 GCACTTTTTGCCTCTCTGGCCGGTTGAGC
130 GCACATTATGCCTCTCT-GCAGGCTCAAC
33126691 GCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
1 GCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
33126750 ATATGGAGTT
Statistics
Matches: 177, Mismatches: 32, Indels: 16
0.79 0.14 0.07
Matches are distributed among these distances:
157 39 0.22
158 132 0.75
159 4 0.02
160 2 0.01
ACGTcount: A:0.18, C:0.27, G:0.29, T:0.26
Consensus pattern (157 bp):
GCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCGGAT
CAGACCGAGGGTTGCGGCAGCAGGACCGACAGCACGTAAGGGGGATCAGGTCAATCCCCAGCTTG
CACATTATGCCTCTCTGCAGGCTCAAC
Found at i:33126752 original size:26 final size:26
Alignment explanation
Indices: 33126722--33126774 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33126712 GTTGGCTTAG
33126722 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
33126748 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
33126774 G
1 G
33126775 ATCGAACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:33126880 original size:184 final size:184
Alignment explanation
Indices: 33126571--33126933 Score: 496
Period size: 184 Copynumber: 2.0 Consensus size: 184
33126561 TATGCATACA
* * * * **
33126571 GAGTTCATTCCCAGTGTAAGATCGGATCAGACCGAGGGTTGCGGTAGCAGGATCGACAGCACGTA
1 GAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACACA
* * * * **
33126636 AGGGGGATCAGGTCAATCCCCAGCTTGCACTTTTTGCCTCTCTGGCCGGTTGAGCGCCCGCACGC
66 AGGGGGACCAGGTCAATCCCCAGCTTGCACATTCTGCCTCTCTGACCGACTGAGCGCCCGCACGC
* *
33126701 TCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATG
131 CCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATG
*
33126755 GAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGTGGCAGCAGGATCGACAGCACACA
1 GAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACACA
* * * * *
33126820 GGGGGGACC-GAGTCGAT-CCCTGTCTTGCGCATTCTGCCTCTCTGACTGACTGAGCGCCCGCAC
66 AGGGGGACCAG-GTCAATCCCCAG-CTTGCACATTCTGCCTCTCTGACCGACTGAGCGCCCGCAC
* *
33126883 GCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTGTAAGC
129 GCCCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
33126934 CCCAACCGGA
Statistics
Matches: 155, Mismatches: 22, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
183 5 0.03
184 150 0.97
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.24
Consensus pattern (184 bp):
GAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACACA
AGGGGGACCAGGTCAATCCCCAGCTTGCACATTCTGCCTCTCTGACCGACTGAGCGCCCGCACGC
CCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATG
Found at i:33127175 original size:499 final size:499
Alignment explanation
Indices: 33126152--33127248 Score: 1364
Period size: 499 Copynumber: 2.2 Consensus size: 499
33126142 GGATGGGCTG
* ** * * * **
33126152 ATCCCCAGCTTTCGTATTATGCCTCTCTGGTTTGTTGAGCAACCGCACGCTCGTTTCGTGGGTTG
1 ATCCCCAGCTTGCACATTCTGCCTCTCTGGCTGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTG
* ** * * *
33126217 ACTTACACATACGGAGTTCATCCCCA-GTCTAAGCATATGGAGTTCATTCCTAGTCTAAGATCGG
66 GCTTAGGCATACGGAGTTCAT-TCCATGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGA
* * * * *** *
33126281 ATCGGACTGAGGGTTACGGCAGCAGGATCGATAGCATGTAGGGGGGACCGGGCCGATCCCCGTCT
130 ACCAGACCGAGGGTTACGGCAGCAGGATCGACAGCACACAGGGGGGACCGAGCCGATCCCCGTCT
* ** * **
33126346 TGCGGATCTACCTCTCCAACCGGTTGAGTGCCCGCACGCCTGTTTCATGGGTTGGCTTAGGCATA
195 TGCGCATCTACCTCTCCAACCGACTGAGCGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATA
* **** * *
33126411 GGGATTTCATTCCATGTCTAAGCCCTGGTCGGACCTAGGGTTGTGGCAGCGGGACCGACAGCACG
260 GGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTGTGGCAGCGAGACCGACAGCACG
* * * * * * *
33126476 TATAGGGGGATCGGGTCGATCCCCGACTTGCCCATTATGCCTCTTCAGTAGCTCAACGCCCGCAC
325 CAGAGGGGGACCCGGTCGATCCCCAACTTGCCCATTATGCCACTTCAGTAGCTCAACGCCCACAC
* * * *
33126541 GCTCGTTTTGTGGGTTGACTTATGCATACAGAGTTCATTCCCAGTGTAAGATCGGATCAGACCGA
390 GCTCGTATCGTGGGTTAACTTATGCATACAGAGTTCATTCCCAGTGTAAGATCGAATCAGACCGA
* *
33126606 GGGTTGCGGTAGCAGGATCGACAGCACGTAAGGGGGATCAGGTCA
455 GGGTTGCGGCAGCAGGATCCACAGCACGTAAGGGGGATCAGGTCA
* * * *
33126651 ATCCCCAGCTTGCACTTTTTGCCTCTCTGGCCGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTG
1 ATCCCCAGCTTGCACATTCTGCCTCTCTGGCTGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTG
33126716 GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGAA
66 GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGAA
** * *
33126781 CCAGACCGAGGGTTGTGGCAGCAGGATCGACAGCACACAGGGGGGACCGAGTCGATCCCTGTCTT
131 CCAGACCGAGGGTTACGGCAGCAGGATCGACAGCACACAGGGGGGACCGAGCCGATCCCCGTCTT
* ** *
33126846 GCGCATTCTGCCTCTCTGACTGACTGAGCGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATA
196 GCGCA-TCTACCTCTCCAACCGACTGAGCGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATA
* *
33126911 GGGAGTTCATTCCATGTGTAAGCCCCAACCGGACCGAGGGTTGTGGCAGCGAGACCAGCCA-CAC
260 GGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTGTGGCAGCGAGACC-GACAGCAC
* * * *
33126975 GCAGAGGGGGACCCGGTCGATCCCCAACTTGCGCATTATGCCACTT-TGATCGGCTCAATGCCCA
324 GCAGAGGGGGACCCGGTCGATCCCCAACTTGCCCATTATGCCACTTCAG-T-AGCTCAACGCCCA
*
33127039 CATGCTCGTATCGTGGGTTAACTTATGCATAC-GAAGTTCATTCCCAGTGTAAGATCGAATC-GA
387 CACGCTCGTATCGTGGGTTAACTTATGCATACAG-AGTTCATTCCCAGTGTAAGATCGAATCAG-
* * * *
33127102 ACCGAGGGTTGTGGCAGCAGGATCCACAGCACG-CAGGGGG-TCGGGTCG
450 ACCGAGGGTTGCGGCAGCAGGATCCACAGCACGTAAGGGGGATCAGGTCA
* * * * *
33127150 ATCCTC-GACTTGCGCATTCTGCCTCTTTGGCTGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTT
1 ATCCCCAG-CTTGCACATTCTGCCTCTCTGGCTGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTT
* *
33127214 GGCTTAGGCATATGAAGTTCATTCCATGTCTAAGC
65 GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
33127249 CCCAGTCGAA
Statistics
Matches: 509, Mismatches: 81, Indels: 16
0.84 0.13 0.03
Matches are distributed among these distances:
498 4 0.01
499 259 0.51
500 149 0.29
501 97 0.19
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.25
Consensus pattern (499 bp):
ATCCCCAGCTTGCACATTCTGCCTCTCTGGCTGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTG
GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGAA
CCAGACCGAGGGTTACGGCAGCAGGATCGACAGCACACAGGGGGGACCGAGCCGATCCCCGTCTT
GCGCATCTACCTCTCCAACCGACTGAGCGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAG
GGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTGTGGCAGCGAGACCGACAGCACGC
AGAGGGGGACCCGGTCGATCCCCAACTTGCCCATTATGCCACTTCAGTAGCTCAACGCCCACACG
CTCGTATCGTGGGTTAACTTATGCATACAGAGTTCATTCCCAGTGTAAGATCGAATCAGACCGAG
GGTTGCGGCAGCAGGATCCACAGCACGTAAGGGGGATCAGGTCA
Found at i:33127330 original size:315 final size:315
Alignment explanation
Indices: 33126756--33127565 Score: 979
Period size: 315 Copynumber: 2.6 Consensus size: 315
33126746 AAGCATATGG
* *
33126756 AGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGTGGCAGCAGGATCGACAGCACACAG
1 AGTTCATTCCCAGTCTAAGATCGAATCAGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCA-
* * * *
33126821 GGGGGACCGAGTCGATCC-CTGTCTTGCGCATTCTGCCTCTCTGACTGACTGAGCGCCCGCACGC
65 GGGGGATCGAGTCGATCCTC-GACTTGCGCATTCTGCCTCTTTGGCTGACTGAGCGCCCGCACGC
* * * * *
33126885 CCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTGTAAGCCCCAACCGGACCGAGG
129 TCGTTTCATGGGTTGGCTTAGGCATA-TGAGTTCATTCCATGTCTAAGCCCCAACCGAACCGAGG
* * *
33126950 GTTGTGGCAGCGAGACCAGCCACACGCAGAGGGGGACCCGGTCGATCCCCAACTTGCGCATTATG
193 GTTGTGGCAGCGAGACCAGACACACGCAGAGGGGGACCAGGCCGATCCCCAACTTGCGCATTATG
** * * * * *
33127015 CCACT-TTGATCGGCTCAATGCCCACATGCTCGTATCGTGGGTTAACTTATGCATACGA
258 CCACTCCAGCT-GACTCAATGCCCACAGGCTCATATCGTGGGTTAACTTAGGCATACGA
* *
33127073 AGTTCATTCCCAGTGTAAGATCGAATC-GAACCGAGGGTTGTGGCAGCAGGATCCACAGCACGCA
1 AGTTCATTCCCAGTCTAAGATCGAATCAG-ACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCA
* * *
33127137 GGGGG-TCGGGTCGATCCTCGACTTGCGCATTCTGCCTCTTTGGCTGGCTGAGCGCCCGTACGCT
65 GGGGGATCGAGTCGATCCTCGACTTGCGCATTCTGCCTCTTTGGCTGACTGAGCGCCCGCACGCT
* **
33127201 CGTTTCGTGGGTTGGCTTAGGCATATGAAGTTCATTCCATGTCTAAGCCCCAGTCGAACCGAGGG
130 CGTTTCATGGGTTGGCTTAGGCATATG-AGTTCATTCCATGTCTAAGCCCCAACCGAACCGAGGG
* * * **
33127266 TTGTGGCAGC-AGGACC-GACAGCACGTAGAGGGGGACTAGGCCGATCCTCGGCTTGCGCATTAT
194 TTGTGGCAGCGA-GACCAGACA-CACGCAGAGGGGGACCAGGCCGATCCCCAACTTGCGCATTAT
* * * * *
33127329 GCCTCTCCAGCTGACTCAGTGCCCGCAGGCTCATTTCGTGGGTTGACTTAGGCATACGA
257 GCCACTCCAGCTGACTCAATGCCCACAGGCTCATATCGTGGGTTAACTTAGGCATACGA
* * * *
33127388 AGTTCATTCCCAGTTTAAGATCGGATCAGACCGAGGGTTGCGGCAGCAGGATTGACAGCACGCAG
1 AGTTCATTCCCAGTCTAAGATCGAATCAGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAG
* ** * ** * * *
33127453 GGGCGATCGAG-CTGATCCTCGGCTTATGCATTCTACCTC-TCCGATCGACTGAGCGCCCACGCG
66 GGG-GATCGAGTC-GATCCTCGACTTGCGCATTCTGCCTCTTTGGCT-GACTGAGCGCCCGCACG
*
33127516 CTCGTTTCATAGGTTGGCTTAGGCATACTGAGTTCATTCCATGTCTAAGC
128 CTCGTTTCATGGGTTGGCTTAGGCATA-TGAGTTCATTCCATGTCTAAGC
33127566 ATACGGAGTT
Statistics
Matches: 423, Mismatches: 58, Indels: 24
0.84 0.11 0.05
Matches are distributed among these distances:
314 5 0.01
315 259 0.61
316 15 0.04
317 142 0.34
318 2 0.00
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (315 bp):
AGTTCATTCCCAGTCTAAGATCGAATCAGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAG
GGGGATCGAGTCGATCCTCGACTTGCGCATTCTGCCTCTTTGGCTGACTGAGCGCCCGCACGCTC
GTTTCATGGGTTGGCTTAGGCATATGAGTTCATTCCATGTCTAAGCCCCAACCGAACCGAGGGTT
GTGGCAGCGAGACCAGACACACGCAGAGGGGGACCAGGCCGATCCCCAACTTGCGCATTATGCCA
CTCCAGCTGACTCAATGCCCACAGGCTCATATCGTGGGTTAACTTAGGCATACGA
Found at i:33127421 original size:159 final size:156
Alignment explanation
Indices: 33126756--33127564 Score: 654
Period size: 159 Copynumber: 5.1 Consensus size: 156
33126746 AAGCATATGG
* * *
33126756 AGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGTGGCAGCAGGATCGACAGCACACAG
1 AGTTCATTCCCAGTCTAAGATCGAATC-GACCGAGGGTTGTGGCAGCAGGACCGACAGCACGCAG
* * *
33126821 -GGGGGACCGAGTCGATCC-CTGTCTTGCGCATTCTGCCTCTCTGACTGACTGAGCGCCCGCACG
65 AGGGGGACCG-GTCGATCCTC-GACTTGCGCATTATGCCTCTCTG-CTGACTCAGCGCCCGCACG
* * * * *
33126884 CCCATTTCATGGGTTGGCTTAGGCATAGGG
127 CTCATTTCGTGGGTTGACTTAGGCATACGA
* ** * * *
33126914 AGTTCATT-CCATGTGTAAGCCCCAACCGGACCGAGGGTTGTGGCAGC-GAGACCAGCCA-CACG
1 AGTTCATTCCCA-GTCTAAGATCGAATC-GACCGAGGGTTGTGGCAGCAG-GACC-GACAGCACG
* * * * * * ** *
33126976 CAGAGGGGGACCCGGTCGATCCCCAACTTGCGCATTATGCCACTTTGATCGGCTCAATGCCCACA
62 CAGAGGGGGA-CCGGTCGATCCTCGACTTGCGCATTATGCCTCTCTGCT-GACTCAGCGCCCGCA
* * * * *
33127041 TGCTCGTATCGTGGGTTAACTTATGCATACGA
125 CGCTCATTTCGTGGGTTGACTTAGGCATACGA
*
33127073 AGTTCATTCCCAGTGTAAGATCGAATCGAACCGAGGGTTGTGGCAGCAGGATCC-ACAGCACGC-
1 AGTTCATTCCCAGTCTAAGATCGAATCG-ACCGAGGGTTGTGGCAGCAGGA-CCGACAGCACGCA
* * * * * * *
33127136 -AGGGGGTCGGGTCGATCCTCGACTTGCGCATTCTGCCTCTTTGGCTGGCTGAGCGCCCGTACGC
64 GAGGGGGACCGGTCGATCCTCGACTTGCGCATTATGCCTCTCT-GCTGACTCAGCGCCCGCACGC
* * *
33127200 TCGTTTCGTGGGTTGGCTTAGGCATATGA
128 TCATTTCGTGGGTTGACTTAGGCATACGA
** * * *
33127229 AGTTCATT-CCATGTCTAAGCCCCAGTCGAACCGAGGGTTGTGGCAGCAGGACCGACAGCACGTA
1 AGTTCATTCCCA-GTCTAAGATCGAATCG-ACCGAGGGTTGTGGCAGCAGGACCGACAGCACGCA
* * * * * *
33127293 GAGGGGGACTAGGCCGATCCTCGGCTTGCGCATTATGCCTCTCCAGCTGACTCAGTGCCCGCAGG
64 GAGGGGGAC-CGGTCGATCCTCGACTTGCGCATTATGCCTCT-CTGCTGACTCAGCGCCCGCACG
33127358 CTCATTTCGTGGGTTGACTTAGGCATACGA
127 CTCATTTCGTGGGTTGACTTAGGCATACGA
* * * **
33127388 AGTTCATTCCCAGTTTAAGATCGGATCAGACCGAGGGTTGCGGCAGCAGGATTGACAGCACGCAG
1 AGTTCATTCCCAGTCTAAGATCGAATC-GACCGAGGGTTGTGGCAGCAGGACCGACAGCACGCAG
* * * ** * * * * * * *
33127453 -GGGCGATCGAG-CTGATCCTCGGCTTATGCATTCTACCTCTCCGATCGACTGAGCGCCCACGCG
65 AGGGGGACCG-GTC-GATCCTCGACTTGCGCATTATGCCTCTCTGCT-GACTCAGCGCCCGCACG
* * * *
33127516 CTCGTTTCATAGGTTGGCTTAGGCATACTG-
127 CTCATTTCGTGGGTTGACTTAGGCATAC-GA
33127546 AGTTCATT-CCATGTCTAAG
1 AGTTCATTCCCA-GTCTAAG
33127565 CATACGGAGT
Statistics
Matches: 523, Mismatches: 102, Indels: 52
0.77 0.15 0.08
Matches are distributed among these distances:
155 5 0.01
156 116 0.22
157 20 0.04
158 137 0.26
159 231 0.44
160 14 0.03
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (156 bp):
AGTTCATTCCCAGTCTAAGATCGAATCGACCGAGGGTTGTGGCAGCAGGACCGACAGCACGCAGA
GGGGGACCGGTCGATCCTCGACTTGCGCATTATGCCTCTCTGCTGACTCAGCGCCCGCACGCTCA
TTTCGTGGGTTGACTTAGGCATACGA
Found at i:33127568 original size:26 final size:26
Alignment explanation
Indices: 33127538--33127590 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33127528 GTTGGCTTAG
*
33127538 GCATACTGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
33127564 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
33127590 G
1 G
33127591 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:33127772 original size:26 final size:26
Alignment explanation
Indices: 33127736--33127786 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
33127726 TTGGCTTAGG
33127736 CATACGGAGTTCATT-CCATGTCTAAA
1 CATACGGAGTTCATTCCCA-GTCTAAA
33127762 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
33127787 GATTGGATCG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAA
Found at i:33128133 original size:26 final size:26
Alignment explanation
Indices: 33128097--33128149 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
33128087 GTTGACTTAG
33128097 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
33128123 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
33128149 G
1 G
33128150 ATTGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:33128634 original size:26 final size:26
Alignment explanation
Indices: 33128598--33128676 Score: 133
Period size: 26 Copynumber: 3.0 Consensus size: 26
33128588 GTTGGCTTAG
*
33128598 GCATATGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
33128624 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
33128650 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
33128676 G
1 G
33128677 ATTTTGAGCC
Statistics
Matches: 51, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
26 48 0.94
27 3 0.06
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:33129367 original size:26 final size:26
Alignment explanation
Indices: 33129331--33129381 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
33129321 ATTGACTTAG
33129331 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
33129357 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACAGAGTTCATCCCCAGTCTA
33129382 TGACTGGATC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.29, G:0.18, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:33129684 original size:159 final size:158
Alignment explanation
Indices: 33129484--33129859 Score: 402
Period size: 159 Copynumber: 2.4 Consensus size: 158
33129474 CCGACTGAGT
* * * * * *
33129484 GCCCGCACGCTCATTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGT
1 GCCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGA
* ** * ** *
33129549 C-AGATCGAGGGTTGTGGTAGCGGGACCGGTAGCACACAGAGGGATATCGGGCCG-ATCCCCGGC
66 CTAGACCGAGGGTTGCAGTAGCAGGACCGACAGCACACAG-GGGAGATCGGG-CGAATCCCCGGC
33129612 TTGCACATTATGCCTCT-TCGGTCAGCTCAGC
129 TTGCACATTATGCCTCTCT-GGT-AGCTCAGC
* * * * *
33129643 GCCCGTACACTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCA-GTGTAAG-ATCAG
1 GCCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAG
* * * * * **
33129706 ACTGGACCGAGGGTTGCAGTAGCAGGATCGACAGCACGCAGGGGGGATCGGGTGAATCCTTGGCT
65 ACTAGACCGAGGGTTGCAGTAGCAGGACCGACAGCACACAGGGGAGATCGGGCGAATCCCCGGCT
* * *
33129771 TGCACATTCTGCCTCTCTGGTTGCTGAGC
130 TGCACATTATGCCTCTCTGGTAGCTCAGC
* *
33129800 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGTATACGGAGTTCATTCCATGTCTAAGCA
1 GCCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
33129860 TATGAAGTTC
Statistics
Matches: 177, Mismatches: 34, Indels: 13
0.79 0.15 0.06
Matches are distributed among these distances:
156 3 0.02
157 55 0.31
158 40 0.23
159 76 0.43
160 3 0.02
ACGTcount: A:0.18, C:0.26, G:0.31, T:0.26
Consensus pattern (158 bp):
GCCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGA
CTAGACCGAGGGTTGCAGTAGCAGGACCGACAGCACACAGGGGAGATCGGGCGAATCCCCGGCTT
GCACATTATGCCTCTCTGGTAGCTCAGC
Found at i:33130590 original size:26 final size:26
Alignment explanation
Indices: 33130554--33130604 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
33130544 GTTGACTTAG
33130554 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
33130580 GCATATAGAGTTCATTCCCAGTCTA
1 GCATACAGAGTTCATCCCCAGTCTA
33130605 TGATCGAATC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:33134606 original size:26 final size:26
Alignment explanation
Indices: 33134559--33134611 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
33134549 GTTGACTTAG
* *
33134559 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTATAA
* *
33134585 GCATACAGAGTTCATTCTCAGTATAA
1 GCATACAGAGTTCATCCCCAGTATAA
33134611 G
1 G
33134612 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTATAA
Found at i:33136755 original size:159 final size:159
Alignment explanation
Indices: 33136093--33136923 Score: 602
Period size: 157 Copynumber: 5.2 Consensus size: 159
33136083 AGCCAGTCGA
* *
33136093 AGAGGCATAATGCGCAAGCCGGGGATTGACCCGGTCCCCCTCTGCGTGCTGTCGGTCCTGCTGCC
1 AGAGGCATAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTCTGCGTGCTATCGGTCCTGCTGCC
*
33136158 ACAACCCTCGGTCTGACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGA
66 ACAACCCTCGGTCTGACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGA
* * *
33136223 AACGGGCATGCGGGTGCTCAGTCGGTCGG
131 AACGAGCATGCGGGTGCTCAGCCGGCCGG
* * * * *
33136252 AGAGGCATAATGTGCAAGCCTGGGATCAAGCCGATCCCCCCTGCATGCTGTCGATCCTACTGCAG
1 AGAGGCATAATGCGCAAGCCGGGGATCGACCCGGT-CCCCCT-C-TGC-GT-G---CTA-T-C-G
* *
33136317 GTCCTGCTGCCACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAG
55 GTCCTGCTGCCACAACCCTCGGTCTGACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAG
* * * * * *
33136382 CTAACCCACAAAATGAGTGA-GCGGGTGCTCAGCTGGCTGG
120 CCAACCCACGAAACGAG-CATGCGGGTGCTCAGCCGGCCGG
* * * *** * * * ** *
33136422 AGTGGCAAAATGCGCAAGCCGAGGATCGGTTCAGT-CCCC-CTACGTGCTGTCTATCCTGCTACC
1 AGAGGCATAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTCTGCGTGCTATCGGTCCTGCTGCC
* * * ** ** * *
33136485 CCAACCCTCGGTCT-AGTTTGATCTTAGAC-TGGGAATGAACTCTGTATGCATAAGTCAACCCAC
66 ACAACCCTCGGTCTGA-CTAGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCAC
* ** * * **
33136548 GAAATGAGCATGCGGGCACTGAGCCAGCCAA
129 GAAACGAGCATGCGGGTGCTCAGCCGGCCGG
* * * * * * *
33136579 AGAGGCATAACGTGCAAGTCGGGGATTGACCCGGTCCCCCTCTGCGTGCTATCGGTCCCGTTGCT
1 AGAGGCATAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTCTGCGTGCTATCGGTCCTGCTGCC
* * * *
33136644 ACAACTCTTGGTCT-AGCTAGGCCCTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACG
66 ACAACCCTCGGTCTGA-CTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACG
* * ** *
33136708 AAACGGGCGTGCGGGCT-CTCAGCCGGTTGT
130 AAACGAGCATGCGGG-TGCTCAGCCGGCCGG
* *** * * ** *
33136738 AGAGGCAGAATGCGCAAGTATGGGATCGACCCGATCCCCC-CTGCGTGCTGTCAATCCTGCTACC
1 AGAGGCATAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTCTGCGTGCTATCGGTCCTGCTGCC
** * * * * ** * ** **
33136802 GTAACTCTCAGTCTG-GTCCGATCTTAGAC-TGGAATGAACTTCGGATGCCTAAATCAACCCACG
66 ACAACCCTCGGTCTGACT-AGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACG
* * * * *
33136865 AAATGAGCATGCAGGTGCTCATCCGACCAG
130 AAACGAGCATGCGGGTGCTCAGCCGGCCGG
** *
33136895 AGAGGCAGGATGCACAAGCCGGGGATCGA
1 AGAGGCATAATGCGCAAGCCGGGGATCGA
33136924 ACGGGTGGTA
Statistics
Matches: 512, Mismatches: 138, Indels: 46
0.74 0.20 0.07
Matches are distributed among these distances:
156 4 0.01
157 174 0.34
158 39 0.08
159 148 0.29
160 9 0.02
161 1 0.00
162 3 0.01
163 3 0.01
164 3 0.01
165 2 0.00
166 1 0.00
167 2 0.00
168 5 0.01
169 1 0.00
170 116 0.23
171 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.20
Consensus pattern (159 bp):
AGAGGCATAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTCTGCGTGCTATCGGTCCTGCTGCC
ACAACCCTCGGTCTGACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGA
AACGAGCATGCGGGTGCTCAGCCGGCCGG
Found at i:33137338 original size:26 final size:26
Alignment explanation
Indices: 33137297--33137349 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
33137287 CCAGTCCGAT
33137297 CTTAGACTAGGAATGAACT-TCGTATG
1 CTTAGACTAGGAATGAACTCT-GTATG
* *
33137323 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCTGTATG
33137349 C
1 C
33137350 CTAAGTAAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCTGTATG
Found at i:33137850 original size:26 final size:26
Alignment explanation
Indices: 33137809--33137861 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
33137799 CCAGTCTGAT
33137809 CTTAGACTGAGAATGAACT-TCGTATG
1 CTTAGACTGAGAATGAACTCT-GTATG
* *
33137835 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGAGAATGAACTCTGTATG
33137861 C
1 C
33137862 CTAAGTAAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCTGTATG
Found at i:33137881 original size:512 final size:512
Alignment explanation
Indices: 33136917--33137937 Score: 1800
Period size: 512 Copynumber: 2.0 Consensus size: 512
33136907 CACAAGCCGG
33136917 GGATCGAACGGGTGGTAGGTGGGTTTAAGCACATCTTCATATTTTTGCCATGCCAATGCCATTTT
1 GGATCGAACGGGTGGTAGGTGGGTTTAAGCACATCTTCATATTTTTGCCATGCCAATGCCATTTT
33136982 TATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCATTGGAGAAGTGGAGAAGATTTTGTGACC
66 TATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCATTGGAGAAGTGGAGAAGATTTTGTGACC
33137047 ATTTGAAAAAAGTGTCCCCATTTCAGACACATTAATGGCTACTGGCAGCAAACCTATAAAGTCTC
131 ATTTGAAAAAAGTGTCCCCATTTCAGACACATTAATGGCTACTGGCAGCAAACCTATAAAGTCTC
*
33137112 AACCGTGTCCCCAAAAACCTTCGTATGCTTAGACATGGAATGAACTCTGTATGCCTAATTCAACC
196 AACCGTGTCCCCAAAAACCTTCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAATTCAACC
*
33137177 CATGAAACGGGCGTTCGGGCACTCAGCCGATCGAAGAGGCAGAATGCGCAAGCCGAGGATCAGCT
261 CATGAAACGGGCGTTCGGGCACTCAGCCGATCGAAGAGGCAAAATGCGCAAGCCGAGGATCAGCT
33137242 CGGTCCCCTCTGCGTGCTATCGATCCTACTGCTGCAACCCTTGGTCCAGTCCGATCTTAGACTAG
326 CGGTCCCCTCTGCGTGCTATCGATCCTACTGCTGCAACCCTTGGTCCAGTCCGATCTTAGACTAG
33137307 GAATGAACTTCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTAAACCCATGAAACAAG
391 GAATGAACTTCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTAAACCCATGAAACAAG
* * * * * * *
33137372 CATGCGGGCGCTCAGCCGGTTGGAGAGGTCGGTCGAAAAGGCATAATGCGCAAGTCA
456 CATGCGGGCACTCAACCGGTCGAAGAGGCCAGTCGAAAAGGCATAATACGCAAGTCA
*
33137429 GGATCGAACGGGTGGTAGGTGGGTTTAAGCACATCTTCATATTTTTGCCGTGCCAATGCCATTTT
1 GGATCGAACGGGTGGTAGGTGGGTTTAAGCACATCTTCATATTTTTGCCATGCCAATGCCATTTT
33137494 TATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCATTGGAGAAGTGGAGAAGATTTTGTGACC
66 TATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCATTGGAGAAGTGGAGAAGATTTTGTGACC
33137559 ATTTGAAAAAAGTGTCCCCATTTCAGACACATTAATGGCTACTGGCAGCAAACCTATAAAGTCTC
131 ATTTGAAAAAAGTGTCCCCATTTCAGACACATTAATGGCTACTGGCAGCAAACCTATAAAGTCTC
33137624 AACC-TGTTCCCCAAAAACCTTCGTATGGC-TAGACATGGAATGAACTCCGTATGCCTAATTCAA
196 AACCGTG-TCCCCAAAAACCTTCGTAT-GCTTAGACATGGAATGAACTCCGTATGCCTAATTCAA
* * * * *
33137687 CCCATGAAACGGGCGTTCGGGCACTCGGTCGATTGGAGAGGCAAAATGCGTAAGCCGAGGATC-G
259 CCCATGAAACGGGCGTTCGGGCACTCAGCCGATCGAAGAGGCAAAATGCGCAAGCCGAGGATCAG
* *
33137751 ACTCGGTCCCCTCTGCGTGCTA-CTGATCCTGCTGCTGCAACCCTTGGTCCAGTCTGATCTTAGA
324 -CTCGGTCCCCTCTGCGTGCTATC-GATCCTACTGCTGCAACCCTTGGTCCAGTCCGATCTTAGA
33137815 CT-GAGAATGAACTTCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTAAACCCATGAA
387 CTAG-GAATGAACTTCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTAAACCCATGAA
*
33137879 ACAAGCGTGCGGGCACTCAACCGGTCGAAGAGGCCAGTCGAAAAGGCATAATACGCAAG
451 ACAAGCATGCGGGCACTCAACCGGTCGAAGAGGCCAGTCGAAAAGGCATAATACGCAAG
33137938 CTGAGGATAA
Statistics
Matches: 486, Mismatches: 18, Indels: 10
0.95 0.04 0.02
Matches are distributed among these distances:
511 5 0.01
512 479 0.99
513 2 0.00
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.25
Consensus pattern (512 bp):
GGATCGAACGGGTGGTAGGTGGGTTTAAGCACATCTTCATATTTTTGCCATGCCAATGCCATTTT
TATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCATTGGAGAAGTGGAGAAGATTTTGTGACC
ATTTGAAAAAAGTGTCCCCATTTCAGACACATTAATGGCTACTGGCAGCAAACCTATAAAGTCTC
AACCGTGTCCCCAAAAACCTTCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAATTCAACC
CATGAAACGGGCGTTCGGGCACTCAGCCGATCGAAGAGGCAAAATGCGCAAGCCGAGGATCAGCT
CGGTCCCCTCTGCGTGCTATCGATCCTACTGCTGCAACCCTTGGTCCAGTCCGATCTTAGACTAG
GAATGAACTTCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTAAACCCATGAAACAAG
CATGCGGGCACTCAACCGGTCGAAGAGGCCAGTCGAAAAGGCATAATACGCAAGTCA
Found at i:33138202 original size:26 final size:26
Alignment explanation
Indices: 33138166--33138218 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
33138156 CCGGTCCGAT
*
33138166 CTTAGACTGGGAATGAACTCAGTATG
1 CTTAGAATGGGAATGAACTCAGTATG
* *
33138192 CTTAGAATGGGGATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCAGTATG
33138218 C
1 C
33138219 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCAGTATG
Found at i:33138537 original size:26 final size:26
Alignment explanation
Indices: 33138508--33138560 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
33138498 TCTGGCTGAT
*
33138508 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
33138534 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
33138560 C
1 C
33138561 CTAAGGCAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.23, C:0.19, G:0.30, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCGTATG
Found at i:33138558 original size:342 final size:340
Alignment explanation
Indices: 33138163--33138798 Score: 801
Period size: 342 Copynumber: 1.9 Consensus size: 340
33138153 AGTCCGGTCC
*
33138163 GATCTTAGACTGGGAATGAACTCAGTATGCTTAGAATGGGGATGAACTCCGTATGCCTAAGTCAA
1 GATCTTAGACTGGGAATGAACTCAGTATGCTTAGAATGGGGATGAACTCCGTATGCCTAAGGCAA
* * * * *
33138228 CCCACGAAATGAGCATACGAGTGCTGAGCCGGCCGGACAGGCATAATGCGTAAGCCGAGGATCAG
66 CCCACGAAACGAGCATACGAGCGCTCAGCCGGCCGGACAGGCAGAATGCGTAAGACGAGGATCAG
* * ** * * *
33138293 CTCGGTCCCCCTCTGCGTGCTTGCCGGTCCCGCTGCCACAACCCTCGGTCCGA-CTGGGGCTTAG
131 CCCGATCCCCC-CTGCGTGC-TGCCAATCCCACTGCCACAACCCTCGGTCCGATC-CGAGCTTAG
* * * * * **
33138357 ACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAGGCGTGTGGGTCTTAGTCGGTC
193 AC-TGGGAATGAACTCCCTATGCATAAGCCAACCCATGAAACAAGCGTGCGGGTCTGAGCCGACC
* *
33138421 GGAGAGGCAGAATGCGCAAG-CTGGGGATCGGCCCGGTCCCCCCTGCATGCTGCTGATCCTACTG
257 GAAGAGGCAGAATGCGCAAGTC-GGGGATCGACCCGGTCCCCCCTGCATGCTGCTGATCCTACTG
33138485 TCGTAACCCTCGATCTGGCT
321 TCGTAACCCTCGATCTGGCT
* * *
33138505 GATCTTAGACTGGGGATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGGCAA
1 GATCTTAGACTGGGAATGAACTCAGTATGCTTAGAATGGGGATGAACTCCGTATGCCTAAGGCAA
* * ** * * * * * *
33138570 TCCACGAAACGGGTGTGCGGGCGCTCAGCCGGCCGGAGAGGTAGAATGCGTAAGACGGGGATCGG
66 CCCACGAAACGAGCATACGAGCGCTCAGCCGGCCGGACAGGCAGAATGCGTAAGACGAGGATCAG
* * * * * * *
33138635 CCCGATCCCCCCTGTGTGCTGTCAATCCTACTGCCACAAGCTTTGGTCCGATCCGATCTTAGACT
131 CCCGATCCCCCCTGCGTGCTGCCAATCCCACTGCCACAACCCTCGGTCCGATCCGAGCTTAGACT
* *
33138700 GGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACAAGCGTGCGGGTCTGAGCCGACCGAAG
196 GGGAATGAACTCCCTATGCATAAGCCAACCCATGAAACAAGCGTGCGGGTCTGAGCCGACCGAAG
*
33138765 AGGCATAATGCGCAAGTCGGGGATCGACCCGGTC
261 AGGCAGAATGCGCAAGTCGGGGATCGACCCGGTC
33138799 TACCTCTGCG
Statistics
Matches: 246, Mismatches: 45, Indels: 8
0.82 0.15 0.03
Matches are distributed among these distances:
339 1 0.00
340 116 0.47
341 9 0.04
342 120 0.49
ACGTcount: A:0.23, C:0.28, G:0.30, T:0.20
Consensus pattern (340 bp):
GATCTTAGACTGGGAATGAACTCAGTATGCTTAGAATGGGGATGAACTCCGTATGCCTAAGGCAA
CCCACGAAACGAGCATACGAGCGCTCAGCCGGCCGGACAGGCAGAATGCGTAAGACGAGGATCAG
CCCGATCCCCCCTGCGTGCTGCCAATCCCACTGCCACAACCCTCGGTCCGATCCGAGCTTAGACT
GGGAATGAACTCCCTATGCATAAGCCAACCCATGAAACAAGCGTGCGGGTCTGAGCCGACCGAAG
AGGCAGAATGCGCAAGTCGGGGATCGACCCGGTCCCCCCTGCATGCTGCTGATCCTACTGTCGTA
ACCCTCGATCTGGCT
Found at i:33138827 original size:158 final size:158
Alignment explanation
Indices: 33138534--33139034 Score: 416
Period size: 158 Copynumber: 3.2 Consensus size: 158
33138524 ACTCTGTATG
* * * ** *
33138534 CTTAGACTGGGGATGAACTCCGTATGCCTAAGGCAATCCACGAAACGGGTGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCATAAGGCAACCCACGAAACAAGCGTGCGGGCGCTCAGC
* * * * * * * **
33138599 CGGCCGGAGAGGTAGAATGCGTAAGACGGGGATCGGCCCGATCCCCCCTGTGTGCTGTCAATCCT
66 CGACCGAAGAGGCAGAATGCGCAAGACGGGGATCGACCCGATCACCCCTGCGTGCTACCAATCCT
33138664 ACTGCCACAAGCTTTGGTCCGATCCGAT
131 ACTGCCACAAGCTTTGGTCCGATCCGAT
* * * *
33138692 CTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACAAGCGTGCGGG-TCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCATAAGGCAACCCACGAAACAAGCGTGCGGGCGCTCAGC
* * * * *
33138756 CGACCGAAGAGGCATAATGCGCAAGTCGGGGATCGACCCGGTCTACCTCTGCGTGCTACCAGTCC
66 CGACCGAAGAGGCAGAATGCGCAAGACGGGGATCGACCCGATC-ACCCCTGCGTGCTACCAATCC
* * * * * * ** *
33138821 TGCTGCCACAACCCTCGGTCTGGTTGGGGT
130 TACTGCCACAAGCTTTGGTC-CGATCCGAT
* * * * * * **
33138851 -GTAGACAT-GGAATGAACTCCCTATGCCTCAGCCAACCCGCGAAACGGGCGTGCGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCATAAGGCAACCCACGAAACAAGCGTGCGGGCGCTCAG
* * * * * * * ** * *
33138914 TC-AGTCGGAGAGGCCGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTATGTGCTGCCGATC
65 CCGA-CCGAAGAGGCAGAATGCGCAAGACGGGGATCGACCCGATCACCCCTGCGTGCTACCAATC
* * * * **
33138978 CTACTGCCGCAACCCTCGGTCCGATTTGAT
129 CTACTGCCACAAGCTTTGGTCCGATCCGAT
33139008 CTTAGACTGGGAATGAACTCCGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
33139035 TTAGACTGGG
Statistics
Matches: 270, Mismatches: 66, Indels: 14
0.77 0.19 0.04
Matches are distributed among these distances:
157 45 0.17
158 180 0.67
159 45 0.17
ACGTcount: A:0.21, C:0.30, G:0.30, T:0.19
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCGTATGCATAAGGCAACCCACGAAACAAGCGTGCGGGCGCTCAGC
CGACCGAAGAGGCAGAATGCGCAAGACGGGGATCGACCCGATCACCCCTGCGTGCTACCAATCCT
ACTGCCACAAGCTTTGGTCCGATCCGAT
Found at i:33139037 original size:26 final size:26
Alignment explanation
Indices: 33139008--33139060 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
33138998 CCGATTTGAT
33139008 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
33139034 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
33139060 C
1 C
33139061 CTAAGTCGAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:33139226 original size:26 final size:26
Alignment explanation
Indices: 33139188--33139240 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
33139178 GGCTCAAATT
33139188 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
33139214 CTTAGAC-GTGGAATGAACTCCGTATG
1 CTTAGACTG-GGAATGAACTCCGTATG
33139240 C
1 C
33139241 CTAAGCCATC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:33139585 original size:159 final size:156
Alignment explanation
Indices: 33139213--33139658 Score: 452
Period size: 159 Copynumber: 2.8 Consensus size: 156
33139203 AACTCCGTAT
* * * *
33139213 GCTTAGACGTGGAATGAACTCCGTATGCCTAAGCCATCCCATGAAATGAGCGTGCGGGCACTCAG
1 GCTTAGAC-TGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCACTCAG
* * * * * * **
33139278 TCGATC-AGAGAGGTAGAATGCGTAAGCCGGGGACCAGCCC-AGTCCCCCCTGCATG-TGGTCGA
65 CCGACCGA-AGAGGCAGAATGCGAAAGCCGGGGATCGGCCCGA-TCCCCCCTGCATGCT-ACCGA
** * *
33139340 TCCTGCTACCGCAACCCTTGGTCTGATCGA
127 TCCCACTACCACAACCCTCGGTCTGATCGA
* * * * *
33139370 TCTTAGACTGGGAATGAACTCCATATGCATAAGTCAACCCACGAAATGAGG-GTGCGGGCGCTGA
1 GCTTAGACT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAATG-GGCGTGCGGGCACTCA
* * *
33139434 GCCGACCGAAGAGGCATAATGCGAAAGCTGGGGATTGGCCCGATCCCCCTCTGCATGCTACCGAT
64 GCCGACCGAAGAGGCAGAATGCGAAAGCCGGGGATCGGCCCGATCCCCC-CTGCATGCTACCGAT
* *
33139499 CCCACTACCACAACCCTCGGTCTGGTTGGA
128 CCCACTACCACAACCCTCGGTCT-GATCGA
* * *
33139529 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGCACTCTA
1 GCTTAGAC-TGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCACTC-A
* * * * * *
33139594 -CCAACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGGTCCCCCCTGCGTGCTACCGATC
64 GCCGACCGAAGAGGCAGAATGCGAAAGCCGGGGATCGGCCCGATCCCCCCTGCATGCTACCGATC
33139658 C
129 C
33139659 TATTGTCGTA
Statistics
Matches: 236, Mismatches: 43, Indels: 19
0.79 0.14 0.06
Matches are distributed among these distances:
156 1 0.00
157 87 0.37
158 51 0.22
159 95 0.40
160 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.18
Consensus pattern (156 bp):
GCTTAGACTGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCACTCAGC
CGACCGAAGAGGCAGAATGCGAAAGCCGGGGATCGGCCCGATCCCCCCTGCATGCTACCGATCCC
ACTACCACAACCCTCGGTCTGATCGA
Found at i:33139729 original size:26 final size:26
Alignment explanation
Indices: 33139690--33139740 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
33139680 GGTCTGATCA
*
33139690 TAGACTGGGAATGAACTTCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
* *
33139716 TAGATTGGGGATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
33139741 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.16, G:0.29, T:0.29
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:33140401 original size:26 final size:26
Alignment explanation
Indices: 33140360--33140412 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
33140350 CCGGTCCGAT
*
33140360 CTTAGACTGAGAATGAACTCTGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
* *
33140386 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
33140412 C
1 C
33140413 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:33144404 original size:26 final size:26
Alignment explanation
Indices: 33144365--33144415 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
33144355 GATTCGATCA
33144365 TAGACTGGGAATGAACTCTATATGCT
1 TAGACTGGGAATGAACTCTATATGCT
* *
33144391 TAGACTGGGGATGAACTCTGTATGC
1 TAGACTGGGAATGAACTCTATATGC
33144416 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.29
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCTATATGCT
Found at i:33145623 original size:26 final size:26
Alignment explanation
Indices: 33145584--33145634 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
33145574 GGTCCAGTCA
33145584 TAGACTGGGAATGAACTCCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
* *
33145610 TAGACTGGGGATGAACTCTGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
33145635 CTAAGTCAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.18, G:0.29, T:0.27
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:33146324 original size:26 final size:26
Alignment explanation
Indices: 33146295--33146367 Score: 137
Period size: 26 Copynumber: 2.8 Consensus size: 26
33146285 TCTTAGATTG
33146295 GGAATGAACTCCGTATGCTTAGACAT
1 GGAATGAACTCCGTATGCTTAGACAT
33146321 GGAATGAACTCCGTATGCTTAGACAT
1 GGAATGAACTCCGTATGCTTAGACAT
*
33146347 GGAATGAACTTCGTATGCTTA
1 GGAATGAACTCCGTATGCTTA
33146368 AGCCAACACA
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 46 1.00
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29
Consensus pattern (26 bp):
GGAATGAACTCCGTATGCTTAGACAT
Found at i:33146849 original size:26 final size:26
Alignment explanation
Indices: 33146813--33146865 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
33146803 TCGATCCGAT
33146813 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
33146839 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
33146865 C
1 C
33146866 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:33147209 original size:26 final size:26
Alignment explanation
Indices: 33147180--33147232 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33147170 CCGATCCAAT
33147180 CTTAGAC-TGGGAATGAACTCCATATG
1 CTTAGACAT-GGAATGAACTCCATATG
*
33147206 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCATATG
33147232 C
1 C
33147233 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:33147415 original size:26 final size:26
Alignment explanation
Indices: 33147386--33147438 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33147376 CCGGTCCGAT
*
33147386 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCAGTATG
33147412 CTTAGACATGGAATGAACTCAGTATG
1 CTTAGACATGGAATGAACTCAGTATG
33147438 C
1 C
33147439 CTAAGCTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCAGTATG
Found at i:33147757 original size:159 final size:157
Alignment explanation
Indices: 33147411--33148193 Score: 523
Period size: 159 Copynumber: 4.9 Consensus size: 157
33147401 AACTCCGTAT
* * * * * * * *
33147411 GCTTAGACATGGAATGAACTCAGTATGCCTAAGCTAACCTACGAAACGAGCGTGCAGGCGCTCAG
1 GCTTACACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCACTGAG
* * * * ** * * * * **
33147476 CCGGTCGGAGAGGCAGAATGCATAAGCCGCGGATC-AGCTC-GATCGCCC-CTGCGTGTTGTCAA
66 CAGCT-GAAGAGGCATAATGCGCAAGTCGAGGATCGA-C-CAG-TCCCCCTCTGCGTGCTGTCGG
* * ** *
33147538 TCCTGCTGCCACAACCCTTGG-TCTAATCCGA
127 TCCTGCTGCCACAACCCTCGGTTC-GATTGGG
* * *
33147569 TCTTAAAC-TGGGAATGAACTCCGTATGCCTAA-CTCAACCCACGAAATGAGCATGCGGGCACTG
1 GCTTACACAT-GGAATGAACTCCGTATGCCTAAGC-CAACCCACGAAACGAGCATGCGGGCACTG
* * * * * * *
33147632 AGTCTGCTGGAGAGGCATAATACGCAAGTCGAGGATCGGTCCAGTCCCCCTCTACATGCTATCGG
64 AG-CAGCTGAAGAGGCATAATGCGCAAGTCGAGGATC-GACCAGTCCCCCTCTGCGTGCTGTCGG
* *
33147697 TCCTACTGCCACAACCCTCGGTTCGACTGGG
127 TCCTGCTGCCACAACCCTCGGTTCGATTGGG
* * * * * * *
33147728 GCTTAGACATGGAATGAACTTCATATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
1 GCTTACACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCACTGAG
* ** * * * *
33147793 CCAACCAAAGAGGTAGAATGCGCAAGTCGAGGATCGACCCGAACCCCC-CTGCGTGCTGT-GGAT
66 -CAGCTGAAGAGGCATAATGCGCAAGTCGAGGATCGACCAG-TCCCCCTCTGCGTGCTGTCGG-T
* *
33147856 CCTGCTGCCACAACCCTCGGTTCGATTCGA
128 CCTGCTGCCACAACCCTCGGTTCGATTGGG
* * * ** * * * *
33147886 TCTTACAC-TAGGAATGAACTTCGTATGCATAAGTTAACCCATGATACGAGCATGTGGGCATTGA
1 GCTTACACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCACTGA
* * * * * * *
33147950 GCCGATCGAAGTGGCATAATGCGCAAGTTGGGGATCGACCGGGTCCCCCTCTGCGTG-TGGCTGG
65 GCAGCT-GAAGAGGCATAATGCGCAAGTCGAGGATCGACC-AGTCCCCCTCTGCGTGCTGTC-GG
* *
33148014 T-CTCGCTGCCACAACCCTCGCTCCGATTGGG
127 TCCT-GCTGCCACAACCCTCGGTTCGATTGGG
* * * * * *
33148045 GCTTACACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
1 GCTTACACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCACTGAG
* * * * * * *
33148110 TCAG-TCGGAGAGGCAGAATGCACAAGAC-AGGGATCGACTCGGTCCCCC-CTGTGTGCTGTCGA
66 -CAGCT-GAAGAGGCATAATGCGCAAGTCGA-GGATCGAC-CAGTCCCCCTCTGCGTGCTGTCGG
33148172 TCCTGCTGCCACAACCCTCGGT
127 TCCTGCTGCCACAACCCTCGGT
33148194 CTGGTCCGAT
Statistics
Matches: 483, Mismatches: 117, Indels: 50
0.74 0.18 0.08
Matches are distributed among these distances:
157 6 0.01
158 229 0.47
159 238 0.49
160 10 0.02
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.20
Consensus pattern (157 bp):
GCTTACACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCACTGAG
CAGCTGAAGAGGCATAATGCGCAAGTCGAGGATCGACCAGTCCCCCTCTGCGTGCTGTCGGTCCT
GCTGCCACAACCCTCGGTTCGATTGGG
Found at i:33147925 original size:158 final size:158
Alignment explanation
Indices: 33147421--33148222 Score: 599
Period size: 158 Copynumber: 5.1 Consensus size: 158
33147411 GCTTAGACAT
* * * *
33147421 GGAATGAAC-TCAGTATGCCTAAGCTAACCTACGAAACGAGCGTGCAGGCGCTCAGCCGGTCGGA
1 GGAATGAACTTC-GTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGTCGGA
** * * * * * **
33147485 GAGGCAGAATGCATAAGCCGCGGATC-AGCTCGATCGCCCCTGCGTGTTGTCAATCCTGCTGCCA
65 GAGGCAGAATGCGCAAGTCGAGGATCGA-CCCGATCCCCCCTGCGTGCTGTGGATCCTGCTGCCA
* * * * *
33147549 CAACCCTTGG-TCTAATCCGATCTTAAACTG
129 CAACCCTCGGTTC-GATTCGATCTTACACTA
* * * * * * *
33147579 GGAATGAACTCCGTATGCCTAA-CTCAACCCACGAAATGAGCATGCGGGCACTGAGTCTG-CTGG
1 GGAATGAACTTCGTATGCCTAAGC-CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGTC-GG
* * ** * * * *
33147642 AGAGGCATAATACGCAAGTCGAGGATCGGTCC-AGTCCCCCTCTACATGCTATCGG-TCCTACTG
64 AGAGGCAGAATGCGCAAGTCGAGGATCGACCCGA-TCCCCC-CTGCGTGCTGT-GGATCCTGCTG
* * ** *
33147705 CCACAACCCTCGGTTCGACTGGGGCTTAGAC-A
126 CCACAACCCTCGGTTCGATTCGATCTTACACTA
* * ** **
33147737 TGGAATGAACTTCATATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGCCAACCAAA
1 -GGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGTCGGA
* *
33147802 GAGGTAGAATGCGCAAGTCGAGGATCGACCCGAACCCCCCTGCGTGCTGTGGATCCTGCTGCCAC
65 GAGGCAGAATGCGCAAGTCGAGGATCGACCCGATCCCCCCTGCGTGCTGTGGATCCTGCTGCCAC
33147867 AACCCTCGGTTCGATTCGATCTTACACTA
130 AACCCTCGGTTCGATTCGATCTTACACTA
* ** * * * * ** * *
33147896 GGAATGAACTTCGTATGCATAAGTTAACCCATGATACGAGCATGTGGGCATTGAGCC-GATCGAA
1 GGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAG-TCGGA
* * * * * *
33147960 GTGGCATAATGCGCAAGTTGGGGATCGACCGGGTCCCCCTCTGCGTG-TGGCTGG-T-CTCGCTG
65 GAGGCAGAATGCGCAAGTCGAGGATCGACCCGATCCCCC-CTGCGTGCT-G-TGGATCCT-GCTG
* * * **
33148022 CCACAACCCTCGCTCCGATTGGGGCTTACAC-A
126 CCACAACCCTCGGTTCGATTCGATCTTACACTA
* * * * *
33148054 TGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAGTCAGTCGGA
1 -GGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGTCGGA
* * * * * *
33148119 GAGGCAGAATGCACAAGAC-AGGGATCGACTCGGTCCCCCCTGTGTGCTGTCGATCCTGCTGCCA
65 GAGGCAGAATGCGCAAGTCGA-GGATCGACCCGATCCCCCCTGCGTGCTGTGGATCCTGCTGCCA
* * * *
33148183 CAACCCTCGG-TCTGGTCCGATCTTAGACTG
129 CAACCCTCGGTTC-GATTCGATCTTACACTA
33148213 GGAATGAACT
1 GGAATGAACT
33148223 CCATATGCTT
Statistics
Matches: 493, Mismatches: 124, Indels: 54
0.73 0.18 0.08
Matches are distributed among these distances:
157 8 0.02
158 241 0.49
159 235 0.48
160 9 0.02
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.20
Consensus pattern (158 bp):
GGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGTCGGAG
AGGCAGAATGCGCAAGTCGAGGATCGACCCGATCCCCCCTGCGTGCTGTGGATCCTGCTGCCACA
ACCCTCGGTTCGATTCGATCTTACACTA
Found at i:33147998 original size:317 final size:317
Alignment explanation
Indices: 33147411--33148230 Score: 945
Period size: 317 Copynumber: 2.6 Consensus size: 317
33147401 AACTCCGTAT
* * *
33147411 GCTTAGACATGGAATGAAC-TCAGTATGCCTAAGCTAACCTACGAAACGAGCGTGCAGGCGCTCA
1 GCTTAGACATGGAATGAACTTCA-TATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * * *
33147475 GCCGGTCGGAGAGGCAGAATGCATAAGCCGCGGATC-AGCTCGATCGCCCCTGCGTGTTGTCAAT
65 GCCAGTCGGAGAGGCAGAATGCACAAGACGAGGATCGA-CTCGATCCCCCCTGCGTGCTGTCGAT
* * *
33147539 CCTGCTGCCACAACCCTTGGTCTAATCCGATCTTAAACTGGGAATGAACTCCGTATGCCTAACTC
129 CCTGCTGCCACAACCCTCGGTCTGATCCGATCTTAAACTGGGAATGAACTCCGTATGCATAACTC
* * * *
33147604 AACCCACGAAATGAGCATGCGGGCACTGAGTCTGCTGGAGAGGCATAATACGCAAGTCGAGGATC
194 AACCCACGAAACGAGCATGCGGGCACTGAGTCCGATGAAGAGGCATAATACGCAAGTCGAGGATC
* * * *
33147669 GGTCCAGTCCCCCTCTACATGCTATC-GGTC-CTACTGCCACAACCCTCGGTTCGACTGGG
259 GGACCAGTCCCCCTCTACATG-TAGCTGGTCTC-ACTGCCACAACCCTCGCTCCGACTGGG
*
33147728 GCTTAGACATGGAATGAACTTCATATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTTCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
** ** * * * * * *
33147793 CCAACCAAAGAGGTAGAATGCGCAAGTCGAGGATCGACCCGAACCCCCCTGCGTGCTGTGGATCC
66 CCAGTCGGAGAGGCAGAATGCACAAGACGAGGATCGACTCGATCCCCCCTGCGTGCTGTCGATCC
* * * * * *
33147858 TGCTGCCACAACCCTCGGT-TCGATTCGATCTTACACTAGGAATGAACTTCGTATGCATAAGTTA
131 TGCTGCCACAACCCTCGGTCT-GATCCGATCTTAAACTGGGAATGAACTCCGTATGCATAACTCA
* * * * * * * *
33147922 ACCCATGATACGAGCATGTGGGCATTGAG-CCGATCGAAGTGGCATAATGCGCAAGTTGGGGATC
195 ACCCACGAAACGAGCATGCGGGCACTGAGTCCGAT-GAAGAGGCATAATACGCAAGTCGAGGATC
* * * * * *
33147986 -GACCGGGTCCCCCTCTGCGTGTGGCTGGTCTCGCTGCCACAACCCTCGCTCCGATTGGG
259 GGACC-AGTCCCCCTCTACATGTAGCTGGTCTCACTGCCACAACCCTCGCTCCGACTGGG
* * * * *
33148045 GCTTACACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTTCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * *
33148110 TCAGTCGGAGAGGCAGAATGCACAAGAC-AGGGATCGACTCGGTCCCCCCTGTGTGCTGTCGATC
66 CCAGTCGGAGAGGCAGAATGCACAAGACGA-GGATCGACTCGATCCCCCCTGCGTGCTGTCGATC
* * *
33148174 CTGCTGCCACAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCATATGC
130 CTGCTGCCACAACCCTCGGTCTGATCCGATCTTAAACTGGGAATGAACTCCGTATGC
33148231 TTAGACATGG
Statistics
Matches: 418, Mismatches: 76, Indels: 18
0.82 0.15 0.04
Matches are distributed among these distances:
316 10 0.02
317 402 0.96
318 6 0.01
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.20
Consensus pattern (317 bp):
GCTTAGACATGGAATGAACTTCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCAGTCGGAGAGGCAGAATGCACAAGACGAGGATCGACTCGATCCCCCCTGCGTGCTGTCGATCC
TGCTGCCACAACCCTCGGTCTGATCCGATCTTAAACTGGGAATGAACTCCGTATGCATAACTCAA
CCCACGAAACGAGCATGCGGGCACTGAGTCCGATGAAGAGGCATAATACGCAAGTCGAGGATCGG
ACCAGTCCCCCTCTACATGTAGCTGGTCTCACTGCCACAACCCTCGCTCCGACTGGG
Found at i:33148242 original size:26 final size:26
Alignment explanation
Indices: 33148204--33148256 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33148194 CTGGTCCGAT
33148204 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
33148230 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
33148256 C
1 C
33148257 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:33148360 original size:184 final size:184
Alignment explanation
Indices: 33148045--33148407 Score: 485
Period size: 184 Copynumber: 2.0 Consensus size: 184
33148035 TCCGATTGGG
* *
33148045 GCTTACACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
1 GCTTACACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAA
* * * * * **
33148110 TCAGTCGGAGAGGCAGAATGCACAAGACAGGGATCGACTCGGTCCCCCCTGTGTGCTGTCGATCC
66 CCAGCCGGAGAGGCAAAAAGCACAAGACAGGGATCGACCCGGTCCCCCCTACGTGCTGTCGATCC
* * * *
33148175 TGCTGCCACAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCATAT
131 TGCTACCACAACCCTCGGTCCGATCCGATCTTACACTGGGAATGAACTCCATAT
* * * *
33148229 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCGTGAAACGAGCGTGTGGGCGCTCAA
1 GCTTACACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAA
** * * * *
33148294 CC-GACCGGAGAGGCAAAAAGTGCAAGCCGGGGATTGACCCGGTCCCCCTTACGTGCTGTCGATC
66 CCAG-CCGGAGAGGCAAAAAGCACAAGACAGGGATCGACCCGGTCCCCCCTACGTGCTGTCGATC
**
33148358 CTGCTACCGTAACCCTCGGTCCGATCCGATCTTACACTGGGAATGAACTC
130 CTGCTACCACAACCCTCGGTCCGATCCGATCTTACACTGGGAATGAACTC
33148408 TGTATGCATA
Statistics
Matches: 153, Mismatches: 25, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
183 1 0.01
184 152 0.99
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (184 bp):
GCTTACACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAA
CCAGCCGGAGAGGCAAAAAGCACAAGACAGGGATCGACCCGGTCCCCCCTACGTGCTGTCGATCC
TGCTACCACAACCCTCGGTCCGATCCGATCTTACACTGGGAATGAACTCCATAT
Found at i:33148559 original size:158 final size:158
Alignment explanation
Indices: 33148229--33148612 Score: 423
Period size: 158 Copynumber: 2.4 Consensus size: 158
33148219 AACTCCATAT
** *
33148229 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCGTGAAACGAGCGTGTGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
* * *
33148294 CCGACCGGAGAGGCAAAAAGTGCAAGCCGGGGATTGACCCGGTCCCCCTTACGTGCTGTCGATCC
66 CCGACCGAAGAGGCAAAAAGTGCAAGCCGGGGATCGACCCGATCCCCCTTACGTGCTGTCGATCC
* ** *
33148359 TGCTACCGTAACCCTCGGTCCGATCCGA
131 CGCTACCACAACCCTAGGTCCGATCCGA
* * * * * * * * **
33148387 TCTTACAC-TGGGAATGAACTCTGTATGCATAAGTCTACCCACAAAACGAGCGTGCGGGTG-TTG
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * *
33148450 AGCTACTGAAGAGGCATAATGTGCAAGCCGGGGATCGACCCGATCCCCCTATACGTGCTGTCGGT
65 ACCGACCGAAGAGGCAAAAAGTGCAAGCCGGGGATCGACCCGATCCCCCT-TACGTGCTGTCGAT
* * *
33148515 CCCGCTGCCACAACCCTAGGTCCTA-CCGGG
129 CCCGCTACCACAACCCTAGGTCCGATCC-GA
* * * *
33148545 GCTTAGACATGGAATGAAATCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
33148610 CCG
66 CCG
33148613 GCCGGGAGAG
Statistics
Matches: 176, Mismatches: 45, Indels: 9
0.77 0.20 0.04
Matches are distributed among these distances:
157 46 0.26
158 126 0.72
159 4 0.02
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
CCGACCGAAGAGGCAAAAAGTGCAAGCCGGGGATCGACCCGATCCCCCTTACGTGCTGTCGATCC
CGCTACCACAACCCTAGGTCCGATCCGA
Found at i:33149108 original size:26 final size:26
Alignment explanation
Indices: 33149070--33149122 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
33149060 CCGATCCGAT
*
33149070 CTTAGACCGGGAATGAACTCCATATG
1 CTTAGACAGGGAATGAACTCCATATG
*
33149096 CTTAGACATGGAATGAACTCCATATG
1 CTTAGACAGGGAATGAACTCCATATG
33149122 C
1 C
33149123 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.23, G:0.21, T:0.25
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCATATG
Found at i:33149640 original size:159 final size:156
Alignment explanation
Indices: 33149291--33149720 Score: 490
Period size: 159 Copynumber: 2.7 Consensus size: 156
33149281 AACTCCATAT
* * * * *
33149291 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCTCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGCGTACGGGCGCTCAG
* * ** * * *
33149356 TCGACCGGAGAGGCAGAATGCGTAAGATGGGGATCGACCCGATCCCCCCTCCGTACTGTCGATCC
66 CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGT-CCCCCT-CATACTGTCCATCC
* * *
33149421 TGCTACCGCAACCCTCGGTCCGATCTGA
129 CGCTACCACAACCCTCGGTCCGAGCTGA
* * * * * *
33149449 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCTAAGAAATGAGTGTACGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGCGTACGGGCGCTCA
*
33149513 GCCGACCGGAGAGGCATAATGCGCAAGCCGGGGATC-AGCCCGGTCCCCCT-ATACATGTTCCCA
65 GCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGA-CCCGGTCCCCCTCATAC-TG-T-CCA
* *
33149576 GTCCCGCTGCCACAACCCTCGGTCCG-GCTAGG
126 -TCCCGCTACCACAACCCTCGGTCCGAGCT-GA
* * *
33149608 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGCGTACGGGCGCTCAG
**
33149673 CCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCC
66 CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCC
33149721 CTGCGTGCTG
Statistics
Matches: 227, Mismatches: 36, Indels: 17
0.81 0.13 0.06
Matches are distributed among these distances:
155 3 0.01
156 2 0.01
157 9 0.04
158 91 0.40
159 120 0.53
160 2 0.01
ACGTcount: A:0.24, C:0.31, G:0.28, T:0.17
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGCGTACGGGCGCTCAG
CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTCATACTGTCCATCCCG
CTACCACAACCCTCGGTCCGAGCTGA
Found at i:33149803 original size:26 final size:26
Alignment explanation
Indices: 33149767--33149819 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
33149757 CTAGTCTGAT
33149767 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
33149793 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
33149819 C
1 C
33149820 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:33156348 original size:26 final size:25
Alignment explanation
Indices: 33156309--33156360 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 25
33156299 GGCTCAAAAT
33156309 CTTAGACTGGAATGAACTCCGTATG
1 CTTAGACTGGAATGAACTCCGTATG
33156334 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGAC-TGGAATGAACTCCGTATG
33156360 C
1 C
33156361 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 7 0.27
26 19 0.73
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTCCGTATG
Found at i:33156837 original size:26 final size:26
Alignment explanation
Indices: 33156808--33156863 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
33156798 CCGGTCTGAC
33156808 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
*
33156834 CTTAGAGTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
33156860 CTTA
1 CTTA
33156864 AGTCAACCCA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 25 0.89
27 3 0.11
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:33157795 original size:685 final size:681
Alignment explanation
Indices: 33156333--33157795 Score: 1611
Period size: 685 Copynumber: 2.1 Consensus size: 681
33156323 AACTCCGTAT
* *
33156333 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAA
* * * ** *
33156398 TCGATCGGAGAGGCAGAATACGCAAGCTGGGGATCAGCCCGGTCCCTCATGAGTTTGCCGATCCT
66 TCG--CCGAGAGTCAGAATACGCAAGCCGCAGATCAGCCCGGTCCCTCATGAGTCTGCCGATCCT
* *
33156463 ACTGTCGCAACCCTCGGTCCGATCCGATCTTAGACTGGCAATGAACTCCGTATGCCTAAGTCAAC
129 ACTGCCGCAACCCTCGGTCCGATCCAATCTTAGACTGGCAATGAACTCCGTATGCCTAAGTCAAC
* * * * * * *
33156528 CCACGAAACGAGCGTGCGGGCACTGGGCTAGTCGGAGAGGCATACTGTGCAAGTCGGGGATCGAC
194 CCACGAAACGAGCCTACGGGCACTGAGCCAGTCGGAGAGGCATAATGCGCAAGTCGGGGATCAAC
* * *
33156593 TCAGTCCCCTTCTACGTGCTGTTGGTCCCACAGCCACAACCCTCGATCCAGCTAGGGCTTAGACA
259 TCAGTCCCCCTCTACGTGCTATCGGTCCCACAGCCACAACCCTCGATCCAGCTAGGGCTTAGACA
* * ** * * *
33156658 TGGAATGAACTCCCTATGCCTAAGCTAACCCATGAAATAGACGTACGGGCACTCAGCCGATCGGA
324 TAGAATGAACTCCCTATGCCTAAGCAAACCCACAAAATAGACGTACGAGCACTAAGCCGACCGGA
* *
33156723 GAGGCAGAATGTGCCAACTGGGGATCGGCCCGATCCCCCCTGCGTGCTGCCGATCCTATTGCCAC
389 GAGGCAGAATGTGCCAACCGGGGATCGGCCCGATCCCCCCTGCGTGCTGCCGATCCTACTGCCAC
* * * **
33156788 AAACCTCGGTCCGGTCTGACCTTAGACTGGGAATGAACTCCGTATGCTTAGAGTAGGGATGAACT
454 AAACCTCGATCCGATCTGACCTTAAACTGAAAATGAACTCCGTATGCTTAGAGTAGGGATGAACT
* * * * ** * * * *** *
33156853 CCGTATGCTTAAGTCAACCCACGAAACGAGCGTACGGGTTCTTAGCTGACTGGAGAGGCCGAACA
519 CCATATGCCTAAGTCAACCCACAAAACGAGCATACGGGCACTAACCAGACCAAAGAGGCAGAACA
* * * * * * ** * *
33156918 GATAGGCATAATGCACAAGTCGGGGATCAACTCATTCCCCCTTTACGTGCTGTCGATCCCGCTGT
584 GAGAGGCAAAATGCACAAGCCGGAGATCAACTCATTCCCCCTGTA-GTCCTACCAATCCCGCTGC
* ***
33156983 CGATCCTGCTACCATAACCCTCGGTTTGGCTAGG
648 CGATCCTGCTACCATAACCCTCGATCCAGCTAGG
* * *
33157017 GCTTAGACATGGAATGAACTTCGTATGCCTAAACCAACCCATGAAACGAGCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAA
* * * **
33157082 TCGGCCGAAAAGGT-AGAATATGCAAGCCGCAGATC-GGCCGAGTCCCCTC-TGCA-TGCTGTTG
66 TC-GCCG-AGA-GTCAGAATACGCAAGCCGCAGATCAGCCCG-GT-CCCTCATG-AGT-CTGCCG
* ** *
33157143 ATCCTACTGCCGCAACTCTCGGTTTGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
124 ATCCTACTGCCGCAACCCTCGGTCCGATCCAATCTTAGACTGGCAATGAACTCCGTATGCCTAAG
**
33157208 TCAACCCACGAAACGAGCCTACGGGTGCTGAGCCAGTCGGAGAGGCATAATGCGCAAGTCGGGGA
189 TCAACCCACGAAACGAGCCTACGGGCACTGAGCCAGTCGGAGAGGCATAATGCGCAAGTCGGGGA
* * * * * ** *
33157273 TCAA-TCCGGTCCCCCTCTGCGTGCTATCGGTCCCGCTGCCACAACCCTCGGTCTGGCTGGGGCT
254 TCAACT-CAGTCCCCCTCTACGTGCTATCGGTCCCACAGCCACAACCCTCGATCCAGCTAGGGCT
* **
33157337 TAGACATAGAATGAACTCCCTATGCCTAAGCAAACCCACAAAATGGGA-GTACGAGTGCTAAGCC
318 TAGACATAGAATGAACTCCCTATGCCTAAGCAAACCCACAAAAT-AGACGTACGAGCACTAAGCC
* * * *
33157401 GACCGGAGAGGTAGAATGTG-CAAGCCGGGGATCGGCCTGATCCCCCTTGCGTGCT-CTTGATCC
382 GACCGGAGAGGCAGAATGTGCCAA-CCGGGGATCGGCCCGATCCCCCCTGCGTGCTGC-CGATCC
* ** * * * * *
33157464 TGCTGCTGCAACCCTCGATCCGATCTGATCTTAAACTGAAAATGAACTTCGTATGCTTAGATTGG
445 TACTGCCACAAACCTCGATCCGATCTGACCTTAAACTGAAAATGAACTCCGTATGCTTAGAGTAG
* * *
33157529 GGATGAACTCCATATGCCTAAGTCAACCCATAAAATGAGCATGCGGGCACTCAACCAG-CCAAAG
510 GGATGAACTCCATATGCCTAAGTCAACCCACAAAACGAGCATACGGGCACT-AACCAGACCAAAG
*
33157593 AGGTCAG-ACAGAGAGGCAAAATGCACATGCCGGAGATCAAC-CTAGTTCCCCTCTGT-GTCCTA
574 AGG-CAGAACAGAGAGGCAAAATGCACAAGCCGGAGATCAACTC-A-TTCCCC-CTGTAGTCCTA
* * * * *
33157655 CCAATTCCGCTGCCGGTCTTGCTGCCATAATCCTCGATCCAGCT-GG
635 CCAATCCCGCTGCCGATCCTGCTACCATAACCCTCGATCCAGCTAGG
* * * *
33157701 GCCTTAGACATGTAATGAACTTTGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGTGCTCA
1 G-CTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCA
* * *
33157766 ACCAGCCAGAGAGTCAGAATGCACAAGCCG
65 ATC-GCC-GAGAGTCAGAATACGCAAGCCG
33157796 AGGATCGACC
Statistics
Matches: 640, Mismatches: 120, Indels: 37
0.80 0.15 0.05
Matches are distributed among these distances:
683 6 0.01
684 97 0.15
685 520 0.81
686 14 0.02
687 3 0.00
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.21
Consensus pattern (681 bp):
GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAA
TCGCCGAGAGTCAGAATACGCAAGCCGCAGATCAGCCCGGTCCCTCATGAGTCTGCCGATCCTAC
TGCCGCAACCCTCGGTCCGATCCAATCTTAGACTGGCAATGAACTCCGTATGCCTAAGTCAACCC
ACGAAACGAGCCTACGGGCACTGAGCCAGTCGGAGAGGCATAATGCGCAAGTCGGGGATCAACTC
AGTCCCCCTCTACGTGCTATCGGTCCCACAGCCACAACCCTCGATCCAGCTAGGGCTTAGACATA
GAATGAACTCCCTATGCCTAAGCAAACCCACAAAATAGACGTACGAGCACTAAGCCGACCGGAGA
GGCAGAATGTGCCAACCGGGGATCGGCCCGATCCCCCCTGCGTGCTGCCGATCCTACTGCCACAA
ACCTCGATCCGATCTGACCTTAAACTGAAAATGAACTCCGTATGCTTAGAGTAGGGATGAACTCC
ATATGCCTAAGTCAACCCACAAAACGAGCATACGGGCACTAACCAGACCAAAGAGGCAGAACAGA
GAGGCAAAATGCACAAGCCGGAGATCAACTCATTCCCCCTGTAGTCCTACCAATCCCGCTGCCGA
TCCTGCTACCATAACCCTCGATCCAGCTAGG
Found at i:33157911 original size:26 final size:26
Alignment explanation
Indices: 33157873--33157925 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
33157863 CAGGTCCGAT
33157873 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
33157899 CTTAGACAT-GGAATGAACTTCGTATG
1 CTTAGAC-TGGGAATGAACTTCGTATG
33157925 C
1 C
33157926 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:33158446 original size:26 final size:26
Alignment explanation
Indices: 33158375--33158453 Score: 88
Period size: 26 Copynumber: 3.0 Consensus size: 26
33158365 CTGGTCTGAT
* * *
33158375 CTTAGACTGGGAATTAACT-TCATATG
1 CTTAGACTGGGGATGAACTCT-GTATG
* *
33158401 CTTAGATTAGGGATGAACTCTGTATG
1 CTTAGACTGGGGATGAACTCTGTATG
*
33158427 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCTGTATG
33158453 C
1 C
33158454 CTAAGTCAAC
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
26 43 0.98
27 1 0.02
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCTGTATG
Found at i:33159158 original size:26 final size:26
Alignment explanation
Indices: 33159120--33159172 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33159110 GGCTCAAAAT
*
33159120 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
33159146 CTTAGACAT-GGAATGAACTTCGTATG
1 CTTAGAC-TGGGAATGAACTTCGTATG
33159172 C
1 C
33159173 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:33159643 original size:26 final size:26
Alignment explanation
Indices: 33159614--33159666 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
33159604 CCAGTCTGAT
*
33159614 CTTAGACTGGGAATGAACTCCATATG
1 CTTAAACTGGGAATGAACTCCATATG
* *
33159640 CTTAAACTGGGGATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCATATG
33159666 C
1 C
33159667 CTGAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCATATG
Found at i:33159723 original size:13 final size:13
Alignment explanation
Indices: 33159705--33159730 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
33159695 GGCACTTAGT
33159705 CGGTCGGAGAGGC
1 CGGTCGGAGAGGC
33159718 CGGTCGGAGAGGC
1 CGGTCGGAGAGGC
33159731 ATAATGCACA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.23, G:0.54, T:0.08
Consensus pattern (13 bp):
CGGTCGGAGAGGC
Found at i:33160024 original size:26 final size:26
Alignment explanation
Indices: 33159995--33160047 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33159985 CCGGTCCGAT
33159995 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
33160021 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCCGTATG
33160047 C
1 C
33160048 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:33160131 original size:368 final size:363
Alignment explanation
Indices: 33159436--33160151 Score: 803
Period size: 368 Copynumber: 1.9 Consensus size: 363
33159426 CCGCTGGCAC
* *
33159436 AACCCTTGATCCAGCTGGGGCTTACACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA
1 AACCCTCGATCCAGCTGGCGCTTACACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA
* *
33159501 CGGACGTACGGGCACTCAGCCAGTCGGAGAGGCAGAATGCACAAGCCAGGGATCGACCTGATCCG
66 CGGACGTACGGGCACTCAGCCAGTCGGAGAGGCAGAATGCACAAGCCAGGGATCGACCGGATCCC
* *
33159566 TCTATCATGCTACCGATCCTGCTGTCGTAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAA
131 TCTATCATGCTACCGATCCTGCTGTCGTAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAA
* * * *
33159631 CTCCATATGCTTAAACTGGGGATGAACTCCGTATGCCTGAGTCAACCCACGAAACGAGCGTGCAG
196 CTCCATATGCTTAAACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCAG
* * * *
33159696 GCACTTAGTCGGTCGGAGAGGCCGGTCGGAGAGGCATAATGCACAAGTCGAGGATCAGCTCGGTC
261 GCAC-TAG-C-GTC-GAGA-GCCGGTCAGAGAGGCAGAATGCACAAGCCGAGGATCACCTCGGTC
* *
33159761 CCCCTCTGCGTTCTGTCGATCCTGCTACTGGTCCTGCTACCAT
321 CCCCCCTGCGTGCTGTCGATCCTGCTACTGGTCCTGCTACCAT
* *
33159804 AACCCTCGGTCCAGCTGGCGCTTACACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAA
1 AACCCTCGATCCAGCTGGCGCTTACACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA
* * * ** * * *
33159869 -TGAGTGTGCGGGTGCTCAG-CTGATCGGAGAGGCAGAATGCACAAGCCAGGGATCGATTCGGTC
66 CGGA-CGTACGGGCACTCAGCCAG-TCGGAGAGGCAGAATGCACAAGCCAGGGATCGA-CCGG-A
* * *
33159932 TCCCTCTGT-ATGCTATCGATCCTGCTGCTGGTTCTGCTGTCGCAACCCTCGATCCGGTCCGATC
127 TCCCTCTATCATGCTACCGAT-C--CTGCT-G---T-C-GT---AACCCTCGATCCAGTCCGATC
* * *
33159996 TTAGACTGGGAATGAACTCCGTATGCTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCC
180 TTAGACTGGGAATGAACTCCATATGCTTAAAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCC
* * *
33160060 ATGAAACAAGCGTGC-GG-GC-A-C-TC-A-A-CCGGTCAGAGAGGCAGAATGCGCAAGCC-AGG
244 ACGAAACAAGCGTGCAGGCACTAGCGTCGAGAGCCGGTCAGAGAGGCAGAATGCACAAGCCGA-G
33160116 GATCAACCT-GGTCCCCCCCTGCGTGCTGTCGATCCT
308 GATC-ACCTCGGTCCCCCCCTGCGTGCTGTCGATCCT
33160152 ACTGTGCAAC
Statistics
Matches: 294, Mismatches: 35, Indels: 38
0.80 0.10 0.10
Matches are distributed among these distances:
367 5 0.02
368 159 0.54
369 15 0.05
370 9 0.03
371 1 0.00
372 5 0.02
373 3 0.01
375 1 0.00
376 1 0.00
377 2 0.01
378 2 0.01
379 1 0.00
380 2 0.01
381 87 0.30
382 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (363 bp):
AACCCTCGATCCAGCTGGCGCTTACACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA
CGGACGTACGGGCACTCAGCCAGTCGGAGAGGCAGAATGCACAAGCCAGGGATCGACCGGATCCC
TCTATCATGCTACCGATCCTGCTGTCGTAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAA
CTCCATATGCTTAAACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCAG
GCACTAGCGTCGAGAGCCGGTCAGAGAGGCAGAATGCACAAGCCGAGGATCACCTCGGTCCCCCC
CTGCGTGCTGTCGATCCTGCTACTGGTCCTGCTACCAT
Found at i:33160524 original size:26 final size:26
Alignment explanation
Indices: 33160495--33160547 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
33160485 CCGATCCGAT
*
33160495 CTTAGACTGGGAATGATCTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
33160521 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
33160547 C
1 C
33160548 CTATGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:33161678 original size:157 final size:158
Alignment explanation
Indices: 33161224--33161722 Score: 438
Period size: 157 Copynumber: 3.2 Consensus size: 158
33161214 AACTCCATAT
* * * * *
33161224 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAACGTGCGGATGCTTAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGTGCTCAG
* * * * * * ** * ** *
33161289 CCGACCGGCGAGGTAGAATGTGCAAG-CTAGGATCGGCTCAATCCCCCCTGCGTGCTGTCGATCT
66 CCGGCCAGAGAGGTAAAATGCGTAAGCCGGGGATCAGCTCGGTCCCCCCTGCGTGCTGTCGATCC
* * *
33161353 TGCTGCCGCAACCCTCGGTCTGGTCCGA
131 TGCTGCCACAACCCTCAGTCCGGTCCGA
* * * * * * * * *
33161381 TCTTAGAC-TCGGAATGAACTCTGGATACATAAGTCAACCCATGAAATGAGCGTGTGGGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGTGCTCA
* * * * * *
33161445 GCCGGCCAAAGAGGCATAATACGTAAGCCGGGGATCAGCTCGGTCCCCTTCTGCGTGCT-CCGAT
65 GCCGGCCAGAGAGGTAAAATGCGTAAGCCGGGGATCAGCTCGGTCCCC-CCTGCGTGCTGTCGAT
** * * *
33161509 CCCACTACCACAACCCTCAGTCCGG-CTGGG
129 CCTGCTGCCACAACCCTCAGTCCGGTC-CGA
* *
33161539 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAC-AGGCGTGTGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGA-GCGTGTGGGTGCTCA
* *
33161603 -CCGGTCAGAGAGGTAAAATGCGTAAGCCGGGGATCAGCTCGGTCCCCCCTACGTGCTGTCGATC
65 GCCGGCCAGAGAGGTAAAATGCGTAAGCCGGGGATCAGCTCGGTCCCCCCTGCGTGCTGTCGATC
* * * **
33161667 CTGCTGTCACAACCCTC-GATTCGATTTGA
130 CTGCTGCCACAACCCTCAG-TCCGGTCCGA
* *
33161696 TCTTAGAC-TGGAATGAACTCCGCATGC
1 GCTTAGACATGGAATGAACTCCGTATGC
33161723 TTAGACTGGG
Statistics
Matches: 264, Mismatches: 69, Indels: 19
0.75 0.20 0.05
Matches are distributed among these distances:
156 27 0.10
157 140 0.53
158 87 0.33
159 10 0.04
ACGTcount: A:0.23, C:0.29, G:0.26, T:0.21
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGTGCTCAG
CCGGCCAGAGAGGTAAAATGCGTAAGCCGGGGATCAGCTCGGTCCCCCCTGCGTGCTGTCGATCC
TGCTGCCACAACCCTCAGTCCGGTCCGA
Found at i:33162104 original size:26 final size:26
Alignment explanation
Indices: 33162075--33162127 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33162065 CCAGTCTGAT
33162075 CTTAGAC-TCGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
33162101 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
33162127 C
1 C
33162128 CTAATTCCCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:33162635 original size:158 final size:156
Alignment explanation
Indices: 33162367--33162858 Score: 415
Period size: 158 Copynumber: 3.1 Consensus size: 156
33162357 CCGATTAGGG
* * * * *
33162367 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAAGCGTGTGGGCGCTCAGT
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAAGCATGCGGGCGTTAAGC
** * * * * * * *
33162432 CGGCCAGAGAGGCAGAATGCGCAAGCTAGGGATCGACTAGGTCCCCCTTGCGTGCCGTCGATCCT
66 CGATCGGAGAGGCA-AAAGCGCAAGCCAGGGATCGGCTCGATCCCCCTTGCGTGCTGTCGATCCT
*
33162497 ACTATCGCAACCCTCAGTCTGGTTTGAT
130 ACTATCGCAACCCTC-GTCTGGTTCGAT
** * ** *
33162525 CTTAGAC-TGGGAATGAACTCTGTATGCCTAAGTCAACCCATAAAACAAGCATGCGGGCGTTGAG
1 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAAGCATGCGGGCGTTAAG
* * * *
33162589 CCGATCGGAGAGGCATAAAGCGCAAGCCAGGGATTGGCCCGATCCCCCTCTGCATGCTGTCGGTC
65 CCGATCGGAGAGGCA-AAAGCGCAAGCCAGGGATCGGCTCGATCCCCCT-TGCGTGCTGTCGATC
* ** * ** * **
33162654 C-GCTGCCCCAACCCTCGATC-GAACTGGGG
128 CTACTATCGCAACCCTCG-TCTG-GTTCGAT
* *
33162683 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGCATGCGGGCGCTTAAT
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAAGCATGCGGGCG-TTAAG
* * * * *
33162748 CGGCT-GGAGAGGCAAAATGTGCAAGCCAGGGATCGGCTCGATCCCCC-TGCGCGCTATCGATCC
65 CCGATCGGAGAGGCAAAA-GCGCAAGCCAGGGATCGGCTCGATCCCCCTTGCGTGCTGTCGATCC
* *
33162811 TAC-AGTCGCAACCATCGGT-TCGGTCCGAT
129 TACTA-TCGCAACCCTC-GTCT-GGTTCGAT
*
33162840 CTCAGAC-TGGGAATGAACT
1 CTTAGACAT-GGAATGAACT
33162859 TCGTATGCTT
Statistics
Matches: 259, Mismatches: 62, Indels: 27
0.74 0.18 0.08
Matches are distributed among these distances:
156 13 0.05
157 33 0.13
158 193 0.75
159 20 0.08
ACGTcount: A:0.25, C:0.30, G:0.27, T:0.19
Consensus pattern (156 bp):
CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAAGCATGCGGGCGTTAAGC
CGATCGGAGAGGCAAAAGCGCAAGCCAGGGATCGGCTCGATCCCCCTTGCGTGCTGTCGATCCTA
CTATCGCAACCCTCGTCTGGTTCGAT
Found at i:33162891 original size:26 final size:26
Alignment explanation
Indices: 33162843--33162892 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
33162833 GTCCGATCTC
* *
33162843 AGACTGGGAATGAACTTCGTATGCTT
1 AGACTGGGAATGAACTCCCTATGCTT
33162869 AGACTAGGG-ATGAACTCCCTATGC
1 AGACT-GGGAATGAACTCCCTATGC
33162893 CTAAGTCAAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
26 18 0.86
27 3 0.14
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (26 bp):
AGACTGGGAATGAACTCCCTATGCTT
Found at i:33164016 original size:159 final size:158
Alignment explanation
Indices: 33163588--33164026 Score: 452
Period size: 159 Copynumber: 2.8 Consensus size: 158
33163578 AACTCCGTAT
* * * *
33163588 GCTTAGATATGGAATGAACTCTGTATGCCTAACCCAACCCACGAAACGAGCGTACGGGCGCTCAA
1 GCTTAGATATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * *
33163653 CCGACCGGAGAGACAAAAAGCGCAAGCTGAGGATCGGCCCGATCCCCC-CTACCTGCTGTCAATC
66 CCGGCCGGAGAGGCAAAATGCGCAAGCCGGGGATC-GCCCGATCCCCCTCTGCGTGCTGTCAATC
** ** *
33163717 TTACTGCTGCAACCCTCGGTCTGGTCTGA
130 CCACTGCCACAACCCTCGGTCTGGACTGA
* ** * * * * * * *
33163746 TCTTAGATGGGGAATGAACTCCGTATGCATAAGTCAACGCACGAAATGAGTGTGCGGGCACTGAG
1 GCTTAGATATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * **
33163811 CCGGTCGGAGAGGCATAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCTCTGCGTGCTGTCGGTC
66 CCGGCCGGAGAGGCAAAATGCGCAAGCCGGGGATC-GCCCGATCCCCCTCTGCGTGCTGTCAATC
* *
33163876 CCGCTGCCACAACCCTCGGTCT-GACTGGG
130 CCACTGCCACAACCCTCGGTCTGGACT-GA
* * * *
33163905 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGGCATGTGGGCGCTCAG
1 GCTTAGATATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * *
33163970 CCGGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCGTTCTGAT-CCCCTCTGCGTGCT
66 CCGGCCGGAGAGGCAAAATGCGCAAGCCGGGGATCG-CCCGATCCCCCTCTGCGTGCT
33164027 ACCGATCTTG
Statistics
Matches: 224, Mismatches: 54, Indels: 6
0.79 0.19 0.02
Matches are distributed among these distances:
158 108 0.48
159 116 0.52
ACGTcount: A:0.23, C:0.30, G:0.29, T:0.18
Consensus pattern (158 bp):
GCTTAGATATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGGCCGGAGAGGCAAAATGCGCAAGCCGGGGATCGCCCGATCCCCCTCTGCGTGCTGTCAATCC
CACTGCCACAACCCTCGGTCTGGACTGA
Found at i:33164374 original size:171 final size:167
Alignment explanation
Indices: 33164089--33164635 Score: 488
Period size: 171 Copynumber: 3.3 Consensus size: 167
33164079 AACTCCATAT
* ** ** *
33164089 GCTTAGAC-TAGGGATGAACTCTGTATGCCTAAATCAACCCATGAAACGAGCGTGCGGGCACTCA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
* * * *** * *
33164153 ACCGGTCGGAGAGGCATAATGCGCAAGCCGGGGATCAATCCGATCCCCCTCTGCATGCTGTCGAT
65 ACCAGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTCGGC--G-TG-CAAT
33164218 CCCGCTGTCGGTCCTGCTACCACAACCCTCGGTCCGGCTGGG
126 CCCGCTGTCGGTCCTGCTACCACAACCCTCGGTCCGGCTGGG
* *
33164260 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAA
* * ** *
33164325 CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGTATCGGTTCGATCCCCCTCGGTGTGCTGCCAATC
66 CCAGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTC-G-GCG-TG-CAATC
* * * * *
33164390 CTGCTG-CTGGTCCTACTACCGCAACCCTCGATCCGGTCT-GA
127 CCGCTGTC-GGTCCTGCTACCACAACCCTCGGTCCGG-CTGGG
* * * ** * *
33164431 TCTTAGAC-TGGGAATGAACTCTATATGCCTAAGTCAACCCACAAAACGAGCGTGTGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
* * * * * *
33164495 GCCAGTCGGAGAGGCATAATGCGCAAGTCGGGGATCGGCCCGATCCCCCTCTGCGTGCTAT--CG
65 ACCAGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTCGGCGTGCAATCCCG
* * * *
33164558 --GTC---CC-GCTACCTCAACCCTCAGTCTGACTGGG
130 CTGTCGGTCCTGCTACCACAACCCTCGGTCCGGCTGGG
* * *
33164590 GCTTACACATGGAATGAACTCCCTACGCCTAAGCCAACCCATGAAA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAA
33164636 TGGGTGTGCA
Statistics
Matches: 310, Mismatches: 57, Indels: 30
0.78 0.14 0.08
Matches are distributed among these distances:
158 2 0.01
159 53 0.17
160 3 0.01
163 1 0.00
164 1 0.00
165 1 0.00
167 3 0.01
168 2 0.01
169 2 0.01
170 2 0.01
171 236 0.76
172 3 0.01
173 1 0.00
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (167 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAA
CCAGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTCGGCGTGCAATCCCGC
TGTCGGTCCTGCTACCACAACCCTCGGTCCGGCTGGG
Found at i:33164904 original size:21 final size:21
Alignment explanation
Indices: 33164878--33164920 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
33164868 AATGCACAAG
*
33164878 TCTACGTGCTATCAATCCCGC
1 TCTACGTGCTACCAATCCCGC
*
33164899 TCTACGTGCTACCGATCCCGC
1 TCTACGTGCTACCAATCCCGC
33164920 T
1 T
33164921 GCCGGTCTTG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.16, C:0.40, G:0.16, T:0.28
Consensus pattern (21 bp):
TCTACGTGCTACCAATCCCGC
Found at i:33165485 original size:26 final size:26
Alignment explanation
Indices: 33165449--33165501 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
33165439 CTGGTGTGAT
33165449 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGGATGAACTCCATATG
* *
33165475 CTTAGACTGGGGTTGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCATATG
33165501 C
1 C
33165502 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCATATG
Found at i:33166175 original size:26 final size:26
Alignment explanation
Indices: 33166137--33166189 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
33166127 GGCTCAAAAT
33166137 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
33166163 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCTGTATG
33166189 C
1 C
33166190 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:33166672 original size:26 final size:26
Alignment explanation
Indices: 33166636--33166688 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
33166626 CCAGTTTGAT
*
33166636 CTTAGAATGGGAATGAACCCCGTATG
1 CTTAGAATGGGAATGAACCCCATATG
* * *
33166662 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGAATGGGAATGAACCCCATATG
33166688 C
1 C
33166689 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACCCCATATG
Found at i:33166763 original size:13 final size:13
Alignment explanation
Indices: 33166741--33166765 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
33166731 CAGAGAAGCC
33166741 AGTCGGAGAGGCT
1 AGTCGGAGAGGCT
33166754 AGTCGGAGAGGC
1 AGTCGGAGAGGC
33166766 ATAATGCGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.16, G:0.48, T:0.12
Consensus pattern (13 bp):
AGTCGGAGAGGCT
Found at i:33167100 original size:26 final size:26
Alignment explanation
Indices: 33167071--33167123 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
33167061 TCGGTCTGAT
33167071 CTTAGAC-TGGGAATGAACTTCGTATG
1 CTTAGACAT-GGAATGAACTTCGTATG
33167097 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGACATGGAATGAACTTCGTATG
33167123 C
1 C
33167124 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTTCGTATG
Found at i:33167992 original size:26 final size:26
Alignment explanation
Indices: 33167963--33168032 Score: 122
Period size: 26 Copynumber: 2.7 Consensus size: 26
33167953 TCTTAGATTG
*
33167963 GGAATGAACTCTGTATGCGTAGACAT
1 GGAATGAACTCCGTATGCGTAGACAT
*
33167989 GGAATGAACTCCGTATGCTTAGACAT
1 GGAATGAACTCCGTATGCGTAGACAT
33168015 GGAATGAACTCCGTATGC
1 GGAATGAACTCCGTATGC
33168033 CTAAGCCAAC
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 42 1.00
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
GGAATGAACTCCGTATGCGTAGACAT
Found at i:33168504 original size:26 final size:26
Alignment explanation
Indices: 33168468--33168520 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
33168458 GCAATCTGAC
33168468 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
33168494 CTTAGATTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
33168520 C
1 C
33168521 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:33168886 original size:26 final size:26
Alignment explanation
Indices: 33168848--33168903 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
33168838 CCGGTCCGAT
*
33168848 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
33168874 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
33168900 CTTA
1 CTTA
33168904 AGCTAACCCA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 27 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:33169739 original size:26 final size:26
Alignment explanation
Indices: 33169701--33169753 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33169691 CCGATCCGAT
33169701 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
33169727 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
33169753 C
1 C
33169754 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:33170026 original size:157 final size:158
Alignment explanation
Indices: 33169726--33170096 Score: 412
Period size: 157 Copynumber: 2.4 Consensus size: 158
33169716 AACTCCATAT
* *
33169726 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGC-GGTCACTTA
1 GCTTAAACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGT-ACTTA
* * * * * * *
33169790 GCGATCGGAGAGGCAGAATGTGCAAGCCGGGGATCGACCTGGTCCCCCCCTACATGCTGTCGATC
65 GCGATCGAAGAGGCAAAATGCGCAAGCCAGGGATCAACCCGGTCCCCCCCTACATGCTGCCGATC
* ** *
33169855 CTACTGCCGTAACCCTCAGTCCGGTCT-GA
130 CTACTACCACAACCCTCAGTCC-GACTAGA
* * * *
33169884 TCTTAAAC-TGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGT-GTT-
1 GCTTAAACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTACTTA
* ** * *
33169946 GCCGGTCGAAGAGGCAAAATGCGCAAGCCAGGGATCAACCCGGTCCCCTTCTGCGTGCTGCC-AG
65 G-CGATCGAAGAGGCAAAATGCGCAAGCCAGGGATCAACCCGGTCCCCCCCTACATGCTGCCGA-
*
33170010 TCCTACTACCACAACCCTCAGTCCGACTAGG
128 TCCTACTACCACAACCCTCAGTCCGACTAGA
* * * *
33170041 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCG
1 GCTTAAACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCG
33170097 AGCGCTCAGC
Statistics
Matches: 177, Mismatches: 30, Indels: 13
0.80 0.14 0.06
Matches are distributed among these distances:
156 5 0.03
157 120 0.68
158 49 0.28
159 3 0.02
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (158 bp):
GCTTAAACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTACTTAG
CGATCGAAGAGGCAAAATGCGCAAGCCAGGGATCAACCCGGTCCCCCCCTACATGCTGCCGATCC
TACTACCACAACCCTCAGTCCGACTAGA
Found at i:33170244 original size:26 final size:26
Alignment explanation
Indices: 33170200--33170252 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33170190 CTAGTCTGAT
*
33170200 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
33170226 CTTAGACTGAGG-ATAAACTCCGTATG
1 CTTAGACTG-GGAATAAACTCCGTATG
33170252 C
1 C
33170253 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:33170351 original size:184 final size:184
Alignment explanation
Indices: 33170057--33170462 Score: 494
Period size: 184 Copynumber: 2.2 Consensus size: 184
33170047 ACATGGAATG
* * * *
33170057 AACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGAGCGCTCAGCCGGCCGAAGAGGTAA
1 AACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGCGCTCAGCCGACCGAAGAGGTAA
* * * ** * **
33170122 AATGCATAAGCCAAAGATCGACTTGATCCCCCCTGCGTGCTACCGATTTTGCTGTTGCAACCCTC
66 AATGCACAAGCCAAAGATCGACCTGATCCCCCCTGCGTACTACCGATCCTACTGCCGCAACCCTC
33170187 GGTCTAG-TCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGAGGATA
131 GGT-TAGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGAGGATA
* * * * * *
33170241 AACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGTGCTCAGTCGACC-AGAGAGGTA
1 AACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGCGCTCAGCCGACCGA-AGAGGTA
** * * * * *
33170305 GGATGCGCAAGCCGAGGATCGACCCT-ATCCCGCCTGTGTACTACCGATCCTACTGCCGCAACCC
65 AAATGCACAAGCCAAAGATCGA-CCTGATCCCCCCTGCGTACTACCGATCCTACTGCCGCAACCC
* * * *
33170369 TCGGTTCGATTTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATG
129 TCGGTTAGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGAGGATA
*
33170425 AACTCTATATGCCTAAGTCAACCCACGAAACGAGCGTG
1 AACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTG
33170463 TCGACCAGAG
Statistics
Matches: 187, Mismatches: 32, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
183 3 0.02
184 182 0.97
185 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.25, T:0.22
Consensus pattern (184 bp):
AACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGCGCTCAGCCGACCGAAGAGGTAA
AATGCACAAGCCAAAGATCGACCTGATCCCCCCTGCGTACTACCGATCCTACTGCCGCAACCCTC
GGTTAGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGAGGATA
Found at i:33170435 original size:26 final size:26
Alignment explanation
Indices: 33170384--33170436 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
33170374 TCGATTTGAT
*
33170384 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
33170410 CTTAGACTGGGGATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
33170436 C
1 C
33170437 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:33171963 original size:26 final size:26
Alignment explanation
Indices: 33171922--33171974 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
33171912 CTAGATCGAT
33171922 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
33171948 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
33171974 C
1 C
33171975 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:33172279 original size:186 final size:184
Alignment explanation
Indices: 33171833--33172693 Score: 725
Period size: 186 Copynumber: 4.6 Consensus size: 184
33171823 CCCAGCCGAT
* * * ** * *
33171833 CGGAGAGGCAGAATGCGAAAGCCAGGGATCGACCCGAT-CCCCCCTACGTGCT-GCTGATCTTAC
1 CGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCGATCCCCCCCTGTGTGCTATC-GATCCTAC
* * * * * * *
33171896 TGCCACAACCCTTGGTCTAGAT-CGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGG
65 TGCCACAACCCTCGGTC-CGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACAGGGA
* * * *
33171960 ATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGCGCTCAGCAAAC
129 ATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCACTCAGC-AGC
* * * * ** * *
33172017 CGGAGAGGCAGAATGTGCAAGCAGGGGATCAGG-CCGATCCCCGCCTGCATGCT-GCTGATCCTG
1 CGGAGAGGCAGAATGCGTAAGCCGGGGATC-GGCCCGATCCCCCCCTGTGTGCTATC-GATCCTA
* *
33172080 CTGCCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACAAGGA
64 CTGCCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACAGGGA
* * *
33172145 ATGAACTCCGGTATGCCTAAGCCAACCCATGAAATGAGTGTGCAGGCACTC-GACTGGC
129 ATGAACTCC-GTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCACTCAG-C-AGC
* *
33172203 CGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCTCGGTCCCCCCCTGTGTGCTATCGATCCTACT
1 CGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCGATCCCCCCCTGTGTGCTATCGATCCTACT
** * * * *
33172268 GCCGTAACCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTCCATATGCTTAGACTGGGGAT
66 GCCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACAGGGAAT
* * * ** * ** *
33172333 GAACTCCGTATGCC-AAGCCAACTCACGAAATGAGCATGTGGGTGCTCAGCCAGT
131 GAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCACTCAG-CAGC
* * * * *
33172387 CGAAGAGGTAGACTATGC--AAGTCAGGGATCAGCCCGATCCCCCCTGCGTGCTGTCGATCCTGC
1 CGGAGAGGCAGA--ATGCGTAAGCCGGGGATCGGCCCGAT-CCCCC--C---CTGT-G----TGC
* * * * *
33172450 TATTGGTCCTACTGCCACAATCCTCGGTCTGGTCCGATCTTAGATTGGGAATGAACTCCATATGC
53 TATCGATCCTACTGCCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGC
* * * * *
33172515 TTAGACATGGAATGAACTCTGTATGGCTAAGCCAACCCAAGAAACGAGGTGTGCGGGTACTCAGG
118 TTAGACAGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGA-GTGTGCGGGCACTCA-G
**
33172580 CCAAT
181 -CAGC
* * * * * * *
33172585 C-GACGAGGTAGAATGCATAACCCGAGGATCGGCCCGATCCCCCTCAGTGTGCTATCGATCGTAC
1 CGGA-GAGGCAGAATGCGTAAGCCGGGGATCGGCCCGATCCCCCCCTGTGTGCTATCGATCCTAC
* * * * *
33172649 TACCATAACCCTCGGTCCGATCCAATTTTAGACTGGGAATGAACT
65 TGCCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACT
33172694 TCGTATGCCT
Statistics
Matches: 548, Mismatches: 102, Indels: 51
0.78 0.15 0.07
Matches are distributed among these distances:
184 84 0.15
185 99 0.18
186 158 0.29
187 51 0.09
190 4 0.01
191 2 0.00
192 3 0.01
195 81 0.15
196 20 0.04
197 17 0.03
198 29 0.05
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.21
Consensus pattern (184 bp):
CGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCGATCCCCCCCTGTGTGCTATCGATCCTACT
GCCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACAGGGAAT
GAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCACTCAGCAGC
Found at i:33172334 original size:26 final size:26
Alignment explanation
Indices: 33172293--33172345 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
33172283 CCGGTCTGAT
33172293 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* * *
33172319 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
33172345 C
1 C
33172346 CAAGCCAACT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:33173387 original size:26 final size:26
Alignment explanation
Indices: 33173358--33173410 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33173348 TCGGTCTGAT
*
33173358 CTTAGAC-TGGGAATGAACTTCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
33173384 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
33173410 C
1 C
33173411 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Done.