Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 363 of 402
Found at i:33173754 original size:867 final size:875
Alignment explanation
Indices: 33172318--33173956 Score: 1957
Period size: 867 Copynumber: 1.9 Consensus size: 875
33172308 AACTCCATAT
* * * * **
33172318 GCTTAGACTGGGGATGAACTCCGTATGCCAAGCCAACTCACGAAATGAGCATGTGGGTGCTCAGC
1 GCTTAGACTGGGAATGAACTCCGTATGCCAAGCCAACCCACGAAATGAACATGCGGCCGCTCAGC
* * * * **
33172383 CAGTCGAAGAGGTAGACTATGCAAGTCAGGGATCAGCCCGATCCCCCCTGCGTGCTGTCGATCCT
66 CAGTCGAAGAGGTAGAATACGCAAGCCAGGGATCAGCCCGATCCCCCCTACGTGCTACCGATCCT
* * *
33172448 GCTATTGGTCCTACTGCCACAATCCTCGGTCTGGTCCGATCTTAGATTGGGAATGAACTCCATAT
131 GCTACTGGTCCTACTACCACAATCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCATAT
* * *
33172513 GCTTAGACATGGAATGAACTCTGTATGGCTAAGCCAACCCAAGAAACGAGGTGTGCGGGTACTCA
196 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGGTGTGCGGGCACTCA
* * *
33172578 GGCCAATCGACGAGGTAGAATGCATAACCCGAGGATCGGCCCGATCCCCCTCAGTGTGCTATCGA
261 GGCCAATCGACGAGGCAGAATGCATAACCCGAGGATCGACCCGATCCCCCTCAGCGTGCTATCGA
* * * *
33172643 TCGTACTACCATAACCCTCGGTCCGATCCAATTTTAGACTGGGAATGAACTTCGTATGCCTAAGT
326 TCCTACTACCACAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
** * * ** * * * * *
33172708 TAACCCACAAAATGAGCGTGCCGACGTTGAGCCGACCGGAGAGGCATAATGCGTAAGTCGGGGAT
391 TAACCCACAAAACAAGCATACCGACACTAACCCGACCGGAGAGGCATAATGCATAAGTCGAGAAT
* * * ** * ** *
33172773 CGGTCCGATCCCACTCTGCGTACTGCCGATCCCGTTACCACAACCTTCGGTCCGACTGGGGCTTT
456 CGGACCGATCCCACTCTACGTACTACCGATCCCACTACCACAACCCTCAATCCGACTGGGGCCTT
* * * * *
33172838 AACATGGAATGAACTCCCTATGCCTAAGCCAACCTACAAAACAGGCGTGCGGGCACTCAGCTGGT
521 AACATGGAATGAACTCCCTATGCATAAGCCAACCCACAAAACAGGCGTGCGGGCACTCAACCGGC
* * * ** *
33172903 CGAAGAG-GCAGAATGTGCAAG-ATGGGGATCGGCCCGATCGCCCCTGCAT-CTTGTTGATCCTT
586 CGAAGAGCCCAGAATGTGCAAGCAGGGGGATCGGCCCGATCCCCCCTGCATGC-TACTGATCCTG
* * * *
33172965 C-TGTC-GC-AACCCTCAGTCCG-GTCTGATCTTAGACTGGGAATGAAATCCGTATGCTTAGACT
650 CATGACTGCAAACCCTCAGTCCGACTCTGATCTTAAACTAGGAATGAAATCCGTATGC-TAGACT
*** * *
33173026 AGGGATGAACTTTGTATGCCTAAGTCAACCCACGAAACGAGCGTGC-GGGTGCTCAGTCGGCTGG
714 AGGGATGAACTCCATATGCCTAAGTCAACACACGAAACGAGCGT-CAGGGCGCTCAGTCGGCTGG
33173090 AGAGGCATAATACGTAAGTCGAGGATCAGCCTGATCCCCTTTCGCGTGCTGCCGATCCCGCTATC
778 AGAGGCATAATACGTAAGTCGAGGATCAGCCTGATCCCCTTTCGCGTGCTGCCGATCCCGCTATC
33173155 GGTCCTGCAGCCACAACCCTCAGTCCAGCTAGG
843 GGTCCTGCAGCCACAACCCTCAGTCCAGCTAGG
* * *
33173188 GCTTAGACAT-GGAATG-ACTCTGTATGCCTAAGCCAACCCATGAAATGAACGTGCGGCCGCTCA
1 GCTTAGAC-TGGGAATGAACTCCGTATGCC-AAGCCAACCCACGAAATGAACATGCGGCCGCTCA
* * * * ** *
33173251 GTCGGTCGGAGAGGTAGAATGCGCAAGCCAGGGATCAGCTTGGTCCCCCCTACGTGCTACCGATC
64 GCCAGTCGAAGAGGTAGAATACGCAAGCCAGGGATCAGCCCGATCCCCCCTACGTGCTACCGATC
* * * * *
33173316 TTGCTGCTGGTCCTACTACCATAA-CACTCGGT-TCGGTCTGATCTTAGACTGGGAATGAACTTC
129 CTGCTACTGGTCCTACTACCACAATC-CTCGGTCT-GGTCCGATCTTAGACTGGGAATGAACTCC
* * * *
33173379 GTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGA-GTGTGCGGGCA
192 ATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGGTGTGCGGGCA
* * * * * *
33173443 CTCA-GTCGATCGGA-GAGGCAGAATGCATAAGCCGAGGATCGACCTGGTCCCCC-CTGCGTGCT
257 CTCAGGCCAATC-GACGAGGCAGAATGCATAACCCGAGGATCGACCCGATCCCCCTCAGCGTGCT
* * * * * * * **
33173505 GTCGATCCTGCTATCGCAACCCTCTGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCC
321 ATCGATCCTACTACCACAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCC
* * *
33173570 TAAGTTAACCCACAAAACAAGCATACGGGCACTAACCCGATCGGAGAGGCATAATGCATAAGTCG
386 TAAGTTAACCCACAAAACAAGCATACCGACACTAACCCGACCGGAGAGGCATAATGCATAAGTCG
* * * * * * *
33173635 AGAATC-GACACGGTCCCCCT-TACGTGCCTACCGATCCCACTGCCACGACCCTCAATCTGGCT-
451 AGAATCGGAC-CGATCCCACTCTACGT-ACTACCGATCCCACTACCACAACCCTCAATCCGACTG
* ** * *
33173697 GGGCCTTAGACATGGAATGAACTCCCTATGCATATGCCAACCCATGAAACGGGCGTGCGGGCGCT
514 GGGCCTTA-ACATGGAATGAACTCCCTATGCATAAGCCAACCCACAAAACAGGCGTGCGGGCACT
* * **
33173762 CAACCGGCCGGAGAGCCCAGAATGTGCAAGCCGGGGGATCGGCCCGATCCCCCCTGTGTGCTACT
578 CAACCGGCCGAAGAGCCCAGAATGTGCAAGCAGGGGGATCGGCCCGATCCCCCCTGCATGCTACT
* * *
33173827 GATCCTGCATGACTGCAAACCCTCGGTCCGACTCTGATCTTAAACTAGGAATGAACTTCGTATGC
643 GATCCTGCATGACTGCAAACCCTCAGTCCGACTCTGATCTTAAACTAGGAATGAAATCCGTATGC
33173892 TAGACTAGGGATGAACTCCATATGCCTAAGTCAACACACGAAACGAGCGTCAGGGCGCTCAGTCG
708 TAGACTAGGGATGAACTCCATATGCCTAAGTCAACACACGAAACGAGCGTCAGGGCGCTCAGTCG
33173957 ACCAGAGAGG
Statistics
Matches: 632, Mismatches: 121, Indels: 30
0.81 0.15 0.04
Matches are distributed among these distances:
866 13 0.02
867 209 0.33
868 52 0.08
869 61 0.10
870 194 0.31
871 4 0.01
872 70 0.11
873 29 0.05
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.21
Consensus pattern (875 bp):
GCTTAGACTGGGAATGAACTCCGTATGCCAAGCCAACCCACGAAATGAACATGCGGCCGCTCAGC
CAGTCGAAGAGGTAGAATACGCAAGCCAGGGATCAGCCCGATCCCCCCTACGTGCTACCGATCCT
GCTACTGGTCCTACTACCACAATCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCATAT
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGGTGTGCGGGCACTCA
GGCCAATCGACGAGGCAGAATGCATAACCCGAGGATCGACCCGATCCCCCTCAGCGTGCTATCGA
TCCTACTACCACAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
TAACCCACAAAACAAGCATACCGACACTAACCCGACCGGAGAGGCATAATGCATAAGTCGAGAAT
CGGACCGATCCCACTCTACGTACTACCGATCCCACTACCACAACCCTCAATCCGACTGGGGCCTT
AACATGGAATGAACTCCCTATGCATAAGCCAACCCACAAAACAGGCGTGCGGGCACTCAACCGGC
CGAAGAGCCCAGAATGTGCAAGCAGGGGGATCGGCCCGATCCCCCCTGCATGCTACTGATCCTGC
ATGACTGCAAACCCTCAGTCCGACTCTGATCTTAAACTAGGAATGAAATCCGTATGCTAGACTAG
GGATGAACTCCATATGCCTAAGTCAACACACGAAACGAGCGTCAGGGCGCTCAGTCGGCTGGAGA
GGCATAATACGTAAGTCGAGGATCAGCCTGATCCCCTTTCGCGTGCTGCCGATCCCGCTATCGGT
CCTGCAGCCACAACCCTCAGTCCAGCTAGG
Found at i:33173758 original size:159 final size:158
Alignment explanation
Indices: 33173384--33173758 Score: 396
Period size: 158 Copynumber: 2.4 Consensus size: 158
33173374 ACTTCGTATG
* * * **
33173384 CTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGTGTGCGGGCACTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTAACC
* * ** *
33173449 CGATCGGAGAGGCAGAATGCATAAGCCGAGGATCGACCTGGTCCCCCCTGCGTGCTGTCGATCCT
66 CGATCGGAGAGGCAGAATGCATAAGCCGAGAATCGACCTGGTCCCCCCTACGTGCTACCGATCCC
* * * ** *
33173514 GCTATCGCAACCCTCTGTCTGGTCTGAT
131 ACTACCACAACCCTCAATCTGGTCTGAC
* * * * *
33173542 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTTAACCCACAAAACAAGCATACGGGCACTAAC
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTAAC
* * *
33173606 CCGATCGGAGAGGCATAATGCATAAGTCGAGAATCGACAC-GGTCCCCCTTACGTGCCTACCGAT
65 CCGATCGGAGAGGCAGAATGCATAAGCCGAGAATCGAC-CTGGTCCCCCCTACGTG-CTACCGAT
* * *
33173670 CCCACTGCCACGACCCTCAATCTGG-CTGGGC
128 CCCACTACCACAACCCTCAATCTGGTCT-GAC
* * * * * *
33173701 CTTAGACATGGAATGAACTCCCTATGCATATGCCAACCCATGAAACGGGCGTGCGGGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
33173759 GCTCAACCGG
Statistics
Matches: 174, Mismatches: 38, Indels: 9
0.79 0.17 0.04
Matches are distributed among these distances:
157 1 0.01
158 102 0.59
159 70 0.40
160 1 0.01
ACGTcount: A:0.26, C:0.30, G:0.25, T:0.20
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTAACC
CGATCGGAGAGGCAGAATGCATAAGCCGAGAATCGACCTGGTCCCCCCTACGTGCTACCGATCCC
ACTACCACAACCCTCAATCTGGTCTGAC
Found at i:33174627 original size:26 final size:26
Alignment explanation
Indices: 33174589--33174641 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
33174579 GGCTCAAAAT
33174589 CTTAGAATGGGAATGAACTCCATATG
1 CTTAGAATGGGAATGAACTCCATATG
33174615 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGA-ATGGGAATGAACTCCATATG
33174641 C
1 C
33174642 CTAAACCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCATATG
Found at i:33175130 original size:26 final size:26
Alignment explanation
Indices: 33175090--33175144 Score: 85
Period size: 26 Copynumber: 2.1 Consensus size: 26
33175080 CAATCCGATA
33175090 TTAGACTGGGAATGAAC-TCTGTATGC
1 TTAGACTGGGAATGAACTTC-GTATGC
*
33175116 TTAGACTGGGGATGAACTTCGTATGC
1 TTAGACTGGGAATGAACTTCGTATGC
33175142 TTA
1 TTA
33175145 AGCCAACCCA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
26 25 0.93
27 2 0.07
ACGTcount: A:0.25, C:0.15, G:0.27, T:0.33
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTTCGTATGC
Found at i:33175636 original size:26 final size:25
Alignment explanation
Indices: 33175598--33175649 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 25
33175588 CCGATCTGAT
**
33175598 CTTAGCTGGGAATGAACTTCGTATG
1 CTTAGCTGGGAATGAACCCCGTATG
*
33175623 CTTAGACTTGGAATGAACCCCGTATG
1 CTTAG-CTGGGAATGAACCCCGTATG
33175649 C
1 C
33175650 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 5 0.22
26 18 0.78
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.29
Consensus pattern (25 bp):
CTTAGCTGGGAATGAACCCCGTATG
Found at i:33176123 original size:26 final size:26
Alignment explanation
Indices: 33176087--33176139 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
33176077 CTGATTTGAT
33176087 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
33176113 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
33176139 C
1 C
33176140 CTAAGTCAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:33176819 original size:26 final size:26
Alignment explanation
Indices: 33176783--33176832 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
33176773 CAGCATGTGC
33176783 ATATGCTTAGAC-TGAGAATGAACTTT
1 ATATGCTTAGACATGA-AATGAACTTT
33176809 ATATGCTTAGACATGAAATGAACT
1 ATATGCTTAGACATGAAATGAACT
33176833 CCGTATGCCT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.38, C:0.12, G:0.18, T:0.32
Consensus pattern (26 bp):
ATATGCTTAGACATGAAATGAACTTT
Found at i:33176839 original size:26 final size:26
Alignment explanation
Indices: 33176782--33176840 Score: 75
Period size: 26 Copynumber: 2.3 Consensus size: 26
33176772 CCAGCATGTG
*
33176782 CATATGCTTAGACTGAGAATGAACTT
1 CATATGCTTAGACTGAGAATGAACTC
*
33176808 TATATGCTTAGACATGA-AATGAACTC
1 CATATGCTTAGAC-TGAGAATGAACTC
*
33176834 CGTATGC
1 CATATGC
33176841 CTAAGCCAAC
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
26 25 0.89
27 3 0.11
ACGTcount: A:0.34, C:0.17, G:0.19, T:0.31
Consensus pattern (26 bp):
CATATGCTTAGACTGAGAATGAACTC
Found at i:33177169 original size:159 final size:157
Alignment explanation
Indices: 33176813--33177568 Score: 513
Period size: 159 Copynumber: 4.8 Consensus size: 157
33176803 AACTTTATAT
* * *
33176813 GCTTAGACATGAAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAA
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAA
* * * * * * **
33176878 TCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCGGTCCCCCCTATGTGCTATCGATCTT
66 CCGATCGAAGAGGCAGAATGCGCAAGCCGGGGATCGCCCGGTCCCCCCTACGTGCTACCGATCCC
** * * *
33176943 GCTACCGTAACCCTCAATCCGGTCTGA
131 GCTACCACAACCCACAATCCGATCGGA
* * * * * *
33176970 TCTTAGAC-TGGGAATGAACTCCT-TATGCATAAGTCAACCCATGAAAAGAGCATGCGGGCACTG
1 GCTTAGACAT-GGAATGAACT-CTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTC
* * * * * *
33177033 AGCCGATCGAAGAGGCATAATGCGTAAGCCGGGGATCGACCCTGTCCCCTTCTACGTGCTACCGG
64 AACCGATCGAAGAGGCAGAATGCGCAAGCCGGGGATCG-CCCGGTCCCC-CCTACGTGCTACCGA
* * * *
33177098 TCCCGTTGCCACAACCCACGATCCAGAT-GGG
127 TCCCGCTACCACAACCCACAATCC-GATCGGA
*
33177129 GCTTAGACATGGAATGAACTCTGTATACCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAA
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAA
** * * * * ** ** *
33177194 CCGAGGGGAGAGGCAGAATGGGCAAGCCGTGGATCAGCCCGATCACCCCCTGTGTGCTGTCAATC
66 CCGATCGAAGAGGCAGAATGCGCAAGCCGGGGATC-GCCCGGTC-CCCCCTACGTGCTACCGATC
* * **** * *
33177259 CTGCTACCGCAACCCTTGGTACGGTTC-GA
129 CCGCTACCACAACCCACAAT-CCGATCGGA
* * * * ** *
33177288 TCTTAGA-GTGGAAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCACTGA
1 GCTTAGACATGG-AATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCA
* * * * * * * * ** *** *
33177352 ACTGA-CATAAGAGGCATAGTGCGCAAGTCGAGGATCGGCTCGATCCTCTTCTACGTGCTGTTGG
65 ACCGATC-GAAGAGGCAGAATGCGCAAGCCGGGGATC-GCCCGGTCC-CCCCTACGTGCTACCGA
* * * * *
33177416 TCCCGCTGCCACAACCCTCAGTCCAGCTAGG-
127 TCCCGCTACCACAACCCACAATCC-GATCGGA
** * * **
33177447 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTACGGGTGCT-AA
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAA
* * * *
33177511 GCCGATC-AGAGAGGCAGAATGCGTAAGCCAGGGATCGGCCTGGTCCCCCCTGCGTGCT
66 -CCGATCGA-AGAGGCAGAATGCGCAAGCCGGGGATC-GCCCGGTCCCCCCTACGTGCT
33177569 TTCGATCCTG
Statistics
Matches: 456, Mismatches: 123, Indels: 39
0.74 0.20 0.06
Matches are distributed among these distances:
156 1 0.00
157 82 0.18
158 28 0.06
159 332 0.73
160 13 0.03
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAA
CCGATCGAAGAGGCAGAATGCGCAAGCCGGGGATCGCCCGGTCCCCCCTACGTGCTACCGATCCC
GCTACCACAACCCACAATCCGATCGGA
Found at i:33177420 original size:318 final size:315
Alignment explanation
Indices: 33176813--33177631 Score: 959
Period size: 318 Copynumber: 2.6 Consensus size: 315
33176803 AACTTTATAT
* *
33176813 GCTTAGACATGAAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAA
* * * *
33176878 TCG-GTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCGGTCCCCCCTATGTGCTATCGATCT
66 CCGAG-CGGAGAGGCAGAATGCGCAAGCC-GGGATCGCCCGGTCCCCCCTGTGTGCTATCGATCC
* ** *
33176942 TGCTACCGTAACCCTCAATCCGG-TCTGATCTTAGACTGGGAATGAACTCCTTATGCATAAGTCA
129 TGCTACCGCAACCCTCGGTCCGGTTC-GATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCA
* * * *
33177006 ACCCATGAAAAGAGCATGCGGGCACTGAGCCGATCGAAGAGGCATAATGCGTAAGCCGGGGATCG
193 ACCCATCAAAAGAGCATGCGGGCACTGAACCGATCGAAGAGGCATAATGCGCAAGCCGAGGATCG
* *
33177071 ACCCTGTCCCCTTCTACGTGCTACCGGTCCCGTTGCCACAACCCAC-GATCCAGATGGG
258 ACCCTGTCCCCTTCTACGTGCTACCGGTCCCGCTGCCACAACCCACAG-TCCAGATAGG
* *
33177129 GCTTAGACATGGAATGAACTCTGTATACCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAA
* * * * *
33177194 CCGAGGGGAGAGGCAGAATGGGCAAGCCGTGGATCAGCCCGATCACCCCCTGTGTGCTGTCAATC
66 CCGAGCGGAGAGGCAGAATGCGCAAGCCG-GGATC-GCCCGGTC-CCCCCTGTGTGCTATCGATC
* * * * *
33177259 CTGCTACCGCAACCCTTGGTACGGTTCGATCTTAGAGTGGAAATGAACTCCGTATGCCTAAGTCA
128 CTGCTACCGCAACCCTCGGTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCA
* * * * *
33177324 ACCCA-CAAAACGAGCGTGCGGGCACTGAACTGA-CATAAGAGGCATAGTGCGCAAGTCGAGGAT
193 ACCCATCAAAA-GAGCATGCGGGCACTGAACCGATC-GAAGAGGCATAATGCGCAAGCCGAGGAT
* * * *** * *
33177387 CGGCTC-GATCCTCTTCTACGTGCTGTTGGTCCCGCTGCCACAACCCTCAGTCCAGCTAGG
256 CGACCCTG-TCCCCTTCTACGTGCTACCGGTCCCGCTGCCACAACCCACAGTCCAGATAGG
* * * **
33177447 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTACGGGTGCT-AA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAA
* * * * * *
33177511 GCCGATCAGAGAGGCAGAATGCGTAAGCCAGGGATCGGCCTGGTCCCCCCTGCGTGCTTTCGATC
66 -CCGAGCGGAGAGGCAGAATGCGCAAGCC-GGGATC-GCCCGGTCCCCCCTGTGTGCTATCGATC
** * * *
33177576 CTGCTGTCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTTCGTATG
128 CTGCTACCGCAACCCTCGGTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATG
33177632 GTTAGACTGG
Statistics
Matches: 424, Mismatches: 68, Indels: 21
0.83 0.13 0.04
Matches are distributed among these distances:
315 1 0.00
316 89 0.21
317 79 0.19
318 251 0.59
319 4 0.01
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.20
Consensus pattern (315 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAA
CCGAGCGGAGAGGCAGAATGCGCAAGCCGGGATCGCCCGGTCCCCCCTGTGTGCTATCGATCCTG
CTACCGCAACCCTCGGTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACC
CATCAAAAGAGCATGCGGGCACTGAACCGATCGAAGAGGCATAATGCGCAAGCCGAGGATCGACC
CTGTCCCCTTCTACGTGCTACCGGTCCCGCTGCCACAACCCACAGTCCAGATAGG
Found at i:33177647 original size:26 final size:26
Alignment explanation
Indices: 33177607--33177657 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
33177597 CGATCCGATC
*
33177607 TTAGACTGGGAATGAACTTCGTATGG
1 TTAGACTGGGAATGAACTCCGTATGG
*
33177633 TTAGACTGGGGATGAACTCCGTATG
1 TTAGACTGGGAATGAACTCCGTATG
33177658 CCTAAGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.14, G:0.31, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGG
Found at i:33179951 original size:26 final size:26
Alignment explanation
Indices: 33179913--33179965 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
33179903 GGCTCAAAAT
33179913 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
33179939 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
33179965 C
1 C
33179966 CTAAGCCTAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:33180242 original size:26 final size:26
Alignment explanation
Indices: 33180213--33180262 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
33180203 ATCCGATTTG
33180213 AGACTAGGAATGAACTCTGTATGCTT
1 AGACTAGGAATGAACTCTGTATGCTT
* * *
33180239 AGACTGGGGATGAACTTTGTATGC
1 AGACTAGGAATGAACTCTGTATGC
33180263 CTAAGTCAAC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.28, C:0.14, G:0.28, T:0.30
Consensus pattern (26 bp):
AGACTAGGAATGAACTCTGTATGCTT
Found at i:33180628 original size:26 final size:26
Alignment explanation
Indices: 33180577--33180628 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
33180567 CCGGTTGATA
*
33180577 TTAGACTGGGAATGAACTCCGCATGC
1 TTAGACTGGGAATGAACTCCACATGC
*
33180603 TTAGACAT-GGAATGAACTCCATATGC
1 TTAGAC-TGGGAATGAACTCCACATGC
33180629 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.21, G:0.23, T:0.25
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCACATGC
Found at i:33181932 original size:26 final size:26
Alignment explanation
Indices: 33181881--33181933 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
33181871 CTGGTGTGAT
*
33181881 CTTAGACTGGAAATGAACTCTATATG
1 CTTAGACTGGAAATGAACTCCATATG
** *
33181907 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCATATG
33181933 C
1 C
33181934 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCATATG
Found at i:33182766 original size:158 final size:158
Alignment explanation
Indices: 33182440--33182780 Score: 332
Period size: 158 Copynumber: 2.2 Consensus size: 158
33182430 TCGGTCTGAT
* * * * * * *
33182440 TCGATCTTATACATGGAATAAACTCCGTATGCCTAAATCAACCCACGAAACGAGTGTGTGGGTGC
1 TCGATCTTAGACATGGAATGAACTCCCTACGCCTAAACCAACCCACAAAACGAGTGCGTGGGTGC
* * * *
33182505 TGAGCTGATCGGAGAGGCATAATGCGCAAGCCGGGGATCAACTCGATCCCCCTCTGCATGCTGCC
66 TCAGCAGATCGGAGAGGCAGAATCCGCAAGCCGGGGATCAACTCGATCCCCCTCTGCATGCTGCC
* *
33182570 GGTCCCGCTGCCACAACCCTCAGTCCGG
131 GATCCCGCTGCCACAACCCTCAGTCAGG
* *** *
33182598 TTGGGGTTAGACATGGAATGAACTCCCTACGCCTAAGCCAACCCACAAAAC-AG-GCGTGCAGGT
1 TCGATCTTAGACATGGAATGAACTCCCTACGCCTAAACCAACCCACAAAACGAGTGCGTG--GGT
* * * * *
33182661 GCTCAGCCAG-TGGGAGAGGCAGAATCCGTAAGCCGGGGATCGACTCGGTCCCCC-CTGCGTGCT
64 GCTCAG-CAGATCGGAGAGGCAGAATCCGCAAGCCGGGGATCAACTCGATCCCCCTCTGCATGCT
* * *** *
33182724 GCCTATCCTGCTGTTGCAACCCTTAGTCAGG
128 GCCGATCCCGCTGCCACAACCCTCAGTCAGG
*
33182755 TCCGATCTTAGA-TTGGAAATGAACTC
1 T-CGATCTTAGACATGG-AATGAACTC
33182781 TGTATGCTTA
Statistics
Matches: 144, Mismatches: 34, Indels: 10
0.77 0.18 0.05
Matches are distributed among these distances:
156 4 0.03
157 37 0.26
158 101 0.70
159 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (158 bp):
TCGATCTTAGACATGGAATGAACTCCCTACGCCTAAACCAACCCACAAAACGAGTGCGTGGGTGC
TCAGCAGATCGGAGAGGCAGAATCCGCAAGCCGGGGATCAACTCGATCCCCCTCTGCATGCTGCC
GATCCCGCTGCCACAACCCTCAGTCAGG
Found at i:33184019 original size:26 final size:26
Alignment explanation
Indices: 33183983--33184033 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
33183973 CCGGTCAGAT
33183983 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
33184009 CTTAGATTGGGGATGAACTCCATAT
1 CTTAGACTGGGAATGAACTCCATAT
33184034 ACCTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:33185565 original size:26 final size:26
Alignment explanation
Indices: 33185514--33185566 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
33185504 GGCTTAAAAT
* *
33185514 CTTAGACTGGGAATGGACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
33185540 CTTAGACAT-GGAATGAACTCTATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
33185566 C
1 C
33185567 CTAAGCCACA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:33186685 original size:26 final size:26
Alignment explanation
Indices: 33186656--33186708 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
33186646 CCGATCTGAT
*
33186656 CTTAGACTGGAAAGGAACTCCGTATG
1 CTTAGACCGGAAAGGAACTCCGTATG
** *
33186682 CTTAGACCGGGGATGAACTCCGTATG
1 CTTAGACCGGAAAGGAACTCCGTATG
33186708 C
1 C
33186709 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.23
Consensus pattern (26 bp):
CTTAGACCGGAAAGGAACTCCGTATG
Found at i:33187103 original size:368 final size:366
Alignment explanation
Indices: 33186460--33187418 Score: 1106
Period size: 368 Copynumber: 2.6 Consensus size: 366
33186450 CCTCCGCGTG
**
33186460 CTGCCAGTCCCACTGCCATAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCTC-TAT
1 CTGCCAGTCCTGCTGCCATAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTC-CGTAT
* ** * * *
33186524 GCCTAAGCCAACCCATGAAACGGGCGTAAGGGCGCTCAGCTGGTCAGAGAGGTAGAATGCGCAAG
65 GCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGATCGGAGAGGTAGAATGCGCAAG
* * * * * * *
33186589 ATGGGGATCCGCTCGGT-CCCCTCTGCGTGCTATCGATCCTACTGCGT-AGCCCTCAGTCCGATC
130 CTGGGGATCGGCT-GATCCCCCT-TACGTGCTGTCGATCCTACTGC-TCAACCCTCAGTCCGGTC
* * *
33186652 TGATCTTAGACTGGAAAGGAACTCCGTATGCTTAGACCGGGGATGAACTCCGTATGCCTAAGTCA
192 TGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACCGGGGATGAACTCCGTATGCCTAAGTCA
* * * *
33186717 ACCCACGAAACAAGCGTGCGAGCGCTCAA-CCGATCGAAA-AGGTCGGCCGGAGAGGCATAATGC
257 ACCCACGAAACAAGCGTGCGAGCACT-AAGCCGA-CCAAAGAGGTCAGCCGAAGAGGCATAATGC
* * *
33186780 ACAAGCCAGGGATTAGCCCGGTCCAACTCTGTGTGCTGTCGATCCCA
320 ACAAGCCAGGGATTAACCCGATCCAACTCTGCGTGCTGTCGATCCCA
* * *
33186827 CTGCCGGTCCTGCTGCCACAACCCTCGGTCGGACTGGGGCTTAGACATGGAATGAACTCCGTATG
1 CTGCCAGTCCTGCTGCCATAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATG
* * * * *
33186892 CCTAAGCCAACCCATAAAACGAGCATGCGGGCGCTTAGCCGATCGGAGAGGCAGAATG-GACAAC
66 CCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGATCGGAGAGGTAGAATGCG-CAAG
* * *
33186956 CTGAGGATCGGTCTGATCCCCCTTACATGCTGCCGATCCTACTGCTACAACCCTCAGTCCGGTCT
130 CTGGGGATCGG-CTGATCCCCCTTACGTGCTGTCGATCCTACTGCT-CAACCCTCAGTCCGGTCT
* *
33187021 GATCTTAGACTGGGAATAAACTTTGTATGCTTAGACTC-GGGATGAACTCCGTATGCCTAAGTCA
193 GATCTTAGACTGGGAATGAACTTCGTATGCTTAGAC-CGGGGATGAACTCCGTATGCCTAAGTCA
* * * * *
33187085 ACCCAGGAAACGAGCGTGCGGGCACTAAGCCGACCAAAGAGGTCAGTCGAAGAGGCATAATGCAT
257 ACCCACGAAACAAGCGTGCGAGCACTAAGCCGACCAAAGAGGTCAGCCGAAGAGGCATAATGCAC
* ** *
33187150 AAGCCGGGGATTAACCCGATCCCCCTCTGCGTGCTGTCGATCCTA
322 AAGCCAGGGATTAACCCGATCCAACTCTGCGTGCTGTCGATCCCA
* * * ** * * *
33187195 CTGTCAGTCCTGCTACCATAACCCTCGATCTAAATGGGGCTTAGACATAGAATGAACTTCGTATG
1 CTGCCAGTCCTGCTGCCATAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATG
* * * ** * *
33187260 ACTAAGCCAACCCATGAAATGAGCGTGCAGGCGCTCAATCGATCGGAGAGGTAGAATGTGGAAGC
66 CCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGATCGGAGAGGTAGAATGCGCAAGC
** * * * * * * *
33187325 -GGGGATCGGCCCAGTCCCCCCTTATGTACTGTCAATCCTGCTGATGCAACCCTCAGTCCAGTTT
131 TGGGGATCGGCTGA-T-CCCCCTTACGTGCTGTCGATCCTACTGCT-CAACCCTCAGTCCGGTCT
33187389 GATCTTAGACTGGGAATGAACTTCGTATGC
193 GATCTTAGACTGGGAATGAACTTCGTATGC
33187419 ATAAGTTAAC
Statistics
Matches: 497, Mismatches: 83, Indels: 23
0.82 0.14 0.04
Matches are distributed among these distances:
366 5 0.01
367 152 0.31
368 338 0.68
369 2 0.00
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.21
Consensus pattern (366 bp):
CTGCCAGTCCTGCTGCCATAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATG
CCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGATCGGAGAGGTAGAATGCGCAAGC
TGGGGATCGGCTGATCCCCCTTACGTGCTGTCGATCCTACTGCTCAACCCTCAGTCCGGTCTGAT
CTTAGACTGGGAATGAACTTCGTATGCTTAGACCGGGGATGAACTCCGTATGCCTAAGTCAACCC
ACGAAACAAGCGTGCGAGCACTAAGCCGACCAAAGAGGTCAGCCGAAGAGGCATAATGCACAAGC
CAGGGATTAACCCGATCCAACTCTGCGTGCTGTCGATCCCA
Found at i:33187871 original size:184 final size:183
Alignment explanation
Indices: 33187596--33188063 Score: 568
Period size: 184 Copynumber: 2.5 Consensus size: 183
33187586 ACCCATGAAA
* *** *
33187596 CGGGCGCTCAGCCGATCAGAGAGGC-AGAATACGTAAGTTGGGGATCGACCTGGTCCCCCCTGCG
1 CGGGCGCTCAGCCGA-CAGAGAGGCAAG-ATACGCAAGCCAGGGATCGGCCTGGTCCCCCCTGCG
* * ** *
33187660 TGCTGCCAATCCTGTTGTCGTAACCCTCGGTCTGGT-TCAATCTTAGACTGGGAATGAAC-TCCA
64 TGCTGCCGATCCTGCTACCGCAACCCTCGGTCTGGTCT-AATCTTAGACTGGGAATGAACAT-CA
*
33187723 TATGCTTAGACTGGGGATGGAA-TCTGTATGCCTAAGTCAACCCATGAAACGAGCGTG
127 TAAGCTTAGACTGGGGAT-GAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTG
* *
33187780 CGGGCACTCAGCCGACCAGAGAGGCAAGATACGCAAGCCAAGGATCGGCCTGGTCCCCCCTGCGT
1 CGGGCGCTCAGCCGA-CAGAGAGGCAAGATACGCAAGCCAGGGATCGGCCTGGTCCCCCCTGCGT
* * *
33187845 GCTGCCGATCCTGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACATCGTAA
65 GCTGCCGATCCTGCTACCGCAACCCTCGGTCTGGTCTAATCTTAGACTGGGAATGAACATCATAA
33187910 GCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTG
130 GCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTG
* * * * * * * *
33187964 CGGGCGGTGAGCTGACTGAATAGGCATA-ATGCGCAAGCCAGGGATCGGCCCGATCCCCCTCTGC
1 CGGGCGCTCAGCCGACAG-AGAGGCA-AGATACGCAAGCCAGGGATCGGCCTGGTCCCCC-CTGC
** * *
33188028 GTGCTGTTGGTCCTGCTACCACAACCCTCGGTCTGG
63 GTGCTGCCGATCCTGCTACCGCAACCCTCGGTCTGG
33188064 GTGGCGCTTA
Statistics
Matches: 245, Mismatches: 32, Indels: 13
0.84 0.11 0.04
Matches are distributed among these distances:
183 5 0.02
184 200 0.82
185 40 0.16
ACGTcount: A:0.22, C:0.29, G:0.29, T:0.21
Consensus pattern (183 bp):
CGGGCGCTCAGCCGACAGAGAGGCAAGATACGCAAGCCAGGGATCGGCCTGGTCCCCCCTGCGTG
CTGCCGATCCTGCTACCGCAACCCTCGGTCTGGTCTAATCTTAGACTGGGAATGAACATCATAAG
CTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTG
Found at i:33191337 original size:159 final size:157
Alignment explanation
Indices: 33190964--33191464 Score: 408
Period size: 157 Copynumber: 3.2 Consensus size: 157
33190954 AACTTTGTAT
** * * * *
33190964 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGAGCGAGCGGGCACTCAA
* * * *
33191029 TCGGCCAGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCCCCTGCATGCTGTCGATCTT
66 CCGGCCAGAGAGCCAGAACGCGCAAGCCGAGGATCGACCCAGTCCCCCTGCATGCTGTCGATCTT
*
33191094 GCTACCATAACCCTCGATCCGATCCAA
131 GCTACCACAACCCTCGATCCGATCCAA
* * * *
33191121 TCTTAGAC-TGGGAATGAACTCCTTATGCATAAGTCAACCCATGAAATGAGC-ATGCGGGCACT-
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGAGCGA-GCGGGCACTC
** * *
33191183 AAGCCGG-TTGAAGAGCCATAACGCGCAAGCC-AGGGATCGGCCCAGTCCCCCT-CTACGTGCTG
64 AA-CCGGCCAG-AGAGCCAGAACGCGCAAGCCGA-GGATCGACCCAGTCCCCCTGC-A--TGCTG
* * * * ****
33191245 TCGATCTTGCTGCCACAACCCTCGGTCTGGTTGGG
123 TCGATCTTGCTACCACAACCCTCGATCCGATCCAA
* * *
33191280 GCTTAGACATGGAGTGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGAGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGAGCGAGCGGGCACTCAA
*** ** * * * *
33191345 CCGGATGGAGAGGTAGAATGCGCAAGCCGGGGATCGACTC-GATCCCCCTGCGTGCTG-CAGATC
66 CCGGCCAGAGAGCCAGAACGCGCAAGCCGAGGATCGACCCAG-TCCCCCTGCATGCTGTC-GATC
* * * * * **
33191408 CTACTACCGCAACCCTCGGTCTGATCTGA
129 TTGCTACCACAACCCTCGATCCGATCCAA
* *
33191437 TCTTAGAC-TGGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCCTATGC
33191465 TTAGACTAGT
Statistics
Matches: 274, Mismatches: 53, Indels: 34
0.76 0.15 0.09
Matches are distributed among these distances:
156 8 0.03
157 141 0.51
158 1 0.00
159 117 0.43
160 7 0.03
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGAGCGAGCGGGCACTCAA
CCGGCCAGAGAGCCAGAACGCGCAAGCCGAGGATCGACCCAGTCCCCCTGCATGCTGTCGATCTT
GCTACCACAACCCTCGATCCGATCCAA
Found at i:33191708 original size:309 final size:309
Alignment explanation
Indices: 33191252--33191810 Score: 734
Period size: 309 Copynumber: 1.8 Consensus size: 309
33191242 CTGTCGATCT
* * ** * * *
33191252 TGCTGCCACAACCCTCGGTCTGGTTGGGGCTTAGACATGGAGTGAACTCCCTATGCCTAAGCCAA
1 TGCTACCACAACCCTCCGTCCAGCTGGGGCTTAGACATGGAATAAACTCCCTATGCCTAAGCCAA
* * * * *
33191317 CCCATGAAATGGGCGAGCGGGCGCTCAACCGGATGGAGAGGTAGAATGCGCAAGCCGGGGATCGA
66 CCCACGAAACGAGCGAGCGGGCACTCAACCGGATGGAGAGGCAGAATGCGCAAGCCGGGGATCGA
* * ** *
33191382 CTCGATCCCCCTGCGTGCTGCAGATCCTACTACCGCAACCCTCGGT-CTGATCTGATCTTAGACT
131 CTCGATCCCCCTGCGTGCTGCAGATCCTACTACCGCAACCCTCAGTCCAG-TCCAAACTTAGACT
* * * *
33191446 GGGAATGAACTCCGTATGCTTAGACTAGTGATGAATTCCGTATGCCTAAGTCAACCCACGAAACG
195 GGGAATGAACTCCATATGCTTAGACTAGGGATGAACTCCGTATGACTAAGTCAACCCACGAAACG
33191511 AGCATGCGGGTGCTCAGTCGACCGAGGAGGCATAATGCACAAGCCGGTCC
260 AGCATGCGGGTGCTCAGTCGACCGAGGAGGCATAATGCACAAGCCGGTCC
* *
33191561 TGCTACCACAACCCTCCGTCCAGCTGGGGC-TAGGACATGGAATAAACTTCGTATGCCTAAGCCA
1 TGCTACCACAACCCTCCGTCCAGCTGGGGCTTA-GACATGGAATAAACTCCCTATGCCTAAGCCA
* *
33191625 ACCCACGAAACGAGCGTA-CGGGCACTCAGCCGG-TCGGAGAGGCAGAATGTGCAAGCC-GGGAT
65 ACCCACGAAACGAGCG-AGCGGGCACTCAACCGGAT-GGAGAGGCAGAATGCGCAAGCCGGGGAT
* * ** * *
33191687 CG-GTCCGGTCCCCCTTGCGTGCTGTTGATCCTGCTGCCGCAACCCTCAGTCCAGTCCAAACTTA
128 CGACT-CGATCCCCC-TGCGTGCTGCAGATCCTACTACCGCAACCCTCAGTCCAGTCCAAACTTA
*
33191751 GACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGACTAAGTCAACC
191 GACTGGGAATGAACTCCATATGCTTAGACTAGGGATGAACTCCGTATGACTAAGTCAACC
33191811 TATGAAATGA
Statistics
Matches: 212, Mismatches: 32, Indels: 12
0.83 0.12 0.05
Matches are distributed among these distances:
307 1 0.00
308 18 0.08
309 190 0.90
310 3 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (309 bp):
TGCTACCACAACCCTCCGTCCAGCTGGGGCTTAGACATGGAATAAACTCCCTATGCCTAAGCCAA
CCCACGAAACGAGCGAGCGGGCACTCAACCGGATGGAGAGGCAGAATGCGCAAGCCGGGGATCGA
CTCGATCCCCCTGCGTGCTGCAGATCCTACTACCGCAACCCTCAGTCCAGTCCAAACTTAGACTG
GGAATGAACTCCATATGCTTAGACTAGGGATGAACTCCGTATGACTAAGTCAACCCACGAAACGA
GCATGCGGGTGCTCAGTCGACCGAGGAGGCATAATGCACAAGCCGGTCC
Found at i:33191776 original size:26 final size:26
Alignment explanation
Indices: 33191747--33191798 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
33191737 CCAGTCCAAA
33191747 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
33191773 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
33191799 ACTAAGTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:33192507 original size:26 final size:26
Alignment explanation
Indices: 33192469--33192524 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
33192459 GGCTCAAAAT
*
33192469 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
33192495 CTTAGAC-GTGGAATGAACTCCGTATG
1 CTTAGACTG-GGAATGAACTCCGTATG
33192521 CTTA
1 CTTA
33192525 AGCCAACCCA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
25 1 0.04
26 27 0.96
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:33192796 original size:159 final size:158
Alignment explanation
Indices: 33192495--33192997 Score: 480
Period size: 159 Copynumber: 3.2 Consensus size: 158
33192485 ACTTCGTATG
* * * * * *
33192495 CTTAGAC-GTGGAATGAACTCCGTATGCTTAAGCCAACCCATGAAACGAGTGTACAGGCGCTCAA
1 CTTAGACTG-GGAATGAACTCCATATGCATAAGCCAACCCACGAAATGAGCGTACAGGCGCTCAG
* * * * * * * *
33192559 CC-GACCGGATAGGCAGAATGTGCAAGTCA-GGATTTGACTCGGTCCCCCCTGACATGCTGTCGA
65 CCAG-CCAGAGAGGCAGAATGCGCAAGCCAGGGA-TCGACCCGATCCCCCCTG-CGTGCTGTCGA
** *
33192622 TCCTGCTGTCGCAA-CCTGCGGTCCGGTTCGAT
127 TCCCACTGTCACAACCCT-CGGTCCGGTTCGAT
* * * * * *
33192654 CTTATACTGGGAATGAACTCCATATGCATAAGTCAACCCATGAAATGAGCGTGCAGGTGCTGAGC
1 CTTAGACTGGGAATGAACTCCATATGCATAAGCCAACCCACGAAATGAGCGTACAGGCGCTCAGC
* * ** * *
33192719 CGGCC-GAAGAGGCATAATGCGCAAGCCAGGGATCGGTCCGATCCCCCTCTGTGTGCTGTCGGTC
66 CAGCCAG-AGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCC-CTGCGTGCTGTCGATC
* * * **
33192783 CCACTG-CAACAACCCTCGGTCTGGCTAGGG
129 CCACTGTC-ACAACCCTCGGTCCGGTTCGAT
* * * *
33192813 CTTAGAC-GTGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTACGGGCGCTCAG
1 CTTAGACTG-GGAATGAACTCCATATGCATAAGCCAACCCACGAAATGAGCGTACAGGCGCTCAG
*
33192877 CCAGTCAGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCC
65 CCAGCCAGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCC
* * * *
33192942 TACTGTCGCAACCCTCGGTCCGGTCCAAT
130 CACTGTCACAACCCTCGGTCCGGTTCGAT
*
33192971 CTTAGACTGGGAATGAACTCCGTATGC
1 CTTAGACTGGGAATGAACTCCATATGC
33192998 TTAGACTAGG
Statistics
Matches: 276, Mismatches: 57, Indels: 23
0.78 0.16 0.06
Matches are distributed among these distances:
158 60 0.22
159 204 0.74
160 12 0.04
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCATATGCATAAGCCAACCCACGAAATGAGCGTACAGGCGCTCAGC
CAGCCAGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCCC
ACTGTCACAACCCTCGGTCCGGTTCGAT
Found at i:33193000 original size:26 final size:26
Alignment explanation
Indices: 33192971--33193023 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
33192961 CCGGTCCAAT
33192971 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
33192997 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
33193023 C
1 C
33193024 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:33193367 original size:26 final size:26
Alignment explanation
Indices: 33193338--33193390 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
33193328 CTGGTCTGAT
33193338 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCTGTATG
* *
33193364 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCTGTATG
33193390 C
1 C
33193391 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCTGTATG
Found at i:33200204 original size:159 final size:157
Alignment explanation
Indices: 33199913--33200406 Score: 420
Period size: 159 Copynumber: 3.1 Consensus size: 157
33199903 TGCTTAGCCA
* * ** * * * *
33199913 TGGAATGAAC-TCTGTATGCCTAGGCCAACCCA-TGAACGAGCATACGGGCGCTCAGTCAATCGG
1 TGGAATGAACTTC-GTATGCATAAGCCAACCCACAAAACGAGCATACGGGCGCTCAGCCGACCGA
* * * * * * * *** *** *
33199976 AGAGGTAGAATGCGCAAGCTGGGGATCGACCCGGTCCCCCCCTACATGCTGTGGATTGTGCTACT
65 AGAGGCAGAATCCGTAAGCCGAGGATCGACCCGAT-CCCCCCTGCATGCTACCGATCCCGCTACC
* *
33200041 ACAACCCTTGGTTCGATCCAATCTTAGAC
129 ACAACCCTCGGTTCGATCCGATCTTAGAC
* * *
33200070 TCGGAATGAACTTCGTATGCATAAGTCAACCCACGAAACGAGCATACGGGCGCTGAGCCGACCGA
1 T-GGAATGAACTTCGTATGCATAAGCCAACCCACAAAACGAGCATACGGGCGCTCAGCCGACCGA
* * * * * *
33200135 AGAGGCATAATCCGTAAGCCGGGGATCGGCTCGGTCCCCCTCTGCATGCTACC-AGTCCCGCTGC
65 AGAGGCAGAATCCGTAAGCCGAGGATCGACCCGATCCCCC-CTGCATGCTACCGA-TCCCGCTAC
* * * **
33200199 CACAACCCTCGGTCTGGCT-GGGGCTTAGAC
128 CACAACCCTCGGT-TCGATCCGATCTTAGAC
* * * * * * * ** *
33200229 ATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCGGGCGCTCAGCTGGTCGG
1 -TGGAATGAACTTCGTATGCATAAGCCAACCCACAAAACGAGCATACGGGCGCTCAGCCGACCGA
* * *
33200294 AGAGGCAGAATGCGTAAGCCGAGGATCGACCCGATCCCCCCTGCATGCTACCGATCCTGCTACCG
65 AGAGGCAGAATCCGTAAGCCGAGGATCGACCCGATCCCCCCTGCATGCTACCGATCCCGCTACCA
*
33200359 CAACCCTCGGTCCGATCCGATCTTAGAC
130 CAACCCTCGGTTCGATCCGATCTTAGAC
33200387 TGGGAATGAACTTCGTATGC
1 T-GGAATGAACTTCGTATGC
33200407 TTAGACTGGG
Statistics
Matches: 264, Mismatches: 63, Indels: 19
0.76 0.18 0.05
Matches are distributed among these distances:
157 4 0.02
158 86 0.33
159 170 0.64
160 4 0.02
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (157 bp):
TGGAATGAACTTCGTATGCATAAGCCAACCCACAAAACGAGCATACGGGCGCTCAGCCGACCGAA
GAGGCAGAATCCGTAAGCCGAGGATCGACCCGATCCCCCCTGCATGCTACCGATCCCGCTACCAC
AACCCTCGGTTCGATCCGATCTTAGAC
Found at i:33200416 original size:26 final size:26
Alignment explanation
Indices: 33200380--33200432 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33200370 CCGATCCGAT
33200380 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
*
33200406 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
33200432 C
1 C
33200433 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:33201630 original size:26 final size:26
Alignment explanation
Indices: 33201601--33201653 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
33201591 CCGGTCTGAT
*
33201601 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
33201627 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
33201653 C
1 C
33201654 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:33201999 original size:26 final size:26
Alignment explanation
Indices: 33201970--33202020 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
33201960 GGTTCGATCC
33201970 TAGACT-GGGAATGAACTCCGTATGCT
1 TAGACTAGGG-ATGAACTCCGTATGCT
33201996 TAGACTAGGGATGAACTCCGTATGC
1 TAGACTAGGGATGAACTCCGTATGC
33202021 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.25
Consensus pattern (26 bp):
TAGACTAGGGATGAACTCCGTATGCT
Found at i:33202666 original size:26 final size:26
Alignment explanation
Indices: 33202636--33202705 Score: 140
Period size: 26 Copynumber: 2.7 Consensus size: 26
33202626 TCTTAGACTG
33202636 GGAATGAACTCCGTATGCTAAGACAT
1 GGAATGAACTCCGTATGCTAAGACAT
33202662 GGAATGAACTCCGTATGCTAAGACAT
1 GGAATGAACTCCGTATGCTAAGACAT
33202688 GGAATGAACTCCGTATGC
1 GGAATGAACTCCGTATGC
33202706 CTTAGCCAAC
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 44 1.00
ACGTcount: A:0.33, C:0.20, G:0.24, T:0.23
Consensus pattern (26 bp):
GGAATGAACTCCGTATGCTAAGACAT
Found at i:33203086 original size:25 final size:26
Alignment explanation
Indices: 33203036--33203087 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
33203026 CTGGTCCGAT
**
33203036 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
33203062 CTTAGATTGGG-ATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
33203087 C
1 C
33203088 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 13 0.57
26 10 0.43
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:33204477 original size:26 final size:26
Alignment explanation
Indices: 33204439--33204491 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33204429 CCAATCCTAT
*
33204439 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
33204465 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
33204491 C
1 C
33204492 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:33204679 original size:26 final size:26
Alignment explanation
Indices: 33204637--33204689 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33204627 GGGTTTGGAT
33204637 CTTAGACTGGAATTGAACTCCATATG
1 CTTAGACTGGAATTGAACTCCATATG
*
33204663 CTTAGACATGGAA-TGAACTCCGTATG
1 CTTAGAC-TGGAATTGAACTCCATATG
33204689 C
1 C
33204690 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAATTGAACTCCATATG
Found at i:33206300 original size:159 final size:158
Alignment explanation
Indices: 33205906--33206306 Score: 428
Period size: 157 Copynumber: 2.5 Consensus size: 158
33205896 ACTCCGTATT
* *
33205906 CTTAGTCATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGAGGGCGCTCAGC
* * * * * *
33205971 CGATCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCTCGGTCCCCCTTGCATGTTGTCGATCCT
66 CGGTCGGAGAGGCACAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCTTGCATGTTGCCGATCCT
* * * ** *
33206036 GCTGTCACAACCCTCGGTCTAGTTTTAT
131 GCTGCCACAACCCTCGGTCCAGCTGGAG
* * ** * * * * * * *
33206064 CTTAGAC-TGGGATGAATTTTGTATGCATAAGTCAACCTACGAAATGAGCGTGAGAGCGCTGAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGAGGGCGCTCAGC
* * * *
33206128 CGG-CCGATGAGGCACAATGTGCAAGCCGGGGATCAGCCCGGTCCCCCTCTGCGTGTTGCCGGTC
66 CGGTCGGA-GAGGCACAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCT-TGCATGTTGCCGATC
* * *
33206192 TTGCTGCCACAACCCTCGGTCCGGCTGGGG
129 CTGCTGCCACAACCCTCGGTCCAGCTGGAG
* * * **
33206222 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAAT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGAGGGCGCTCAGC
*
33206287 CGGTCGGAGAGGCATAATGC
66 CGGTCGGAGAGGCACAATGC
33206307 ATAAGTCGGG
Statistics
Matches: 188, Mismatches: 51, Indels: 7
0.76 0.21 0.03
Matches are distributed among these distances:
156 3 0.02
157 82 0.44
158 46 0.24
159 54 0.29
160 3 0.02
ACGTcount: A:0.22, C:0.28, G:0.29, T:0.21
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGAGGGCGCTCAGC
CGGTCGGAGAGGCACAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCTTGCATGTTGCCGATCCT
GCTGCCACAACCCTCGGTCCAGCTGGAG
Found at i:33206399 original size:26 final size:26
Alignment explanation
Indices: 33206363--33206418 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
33206353 CCGGTCTGAT
33206363 CTTAGACTGGGAATGAACACCGTATG
1 CTTAGACTGGGAATGAACACCGTATG
* *
33206389 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACACCGTATG
33206415 CTTA
1 CTTA
33206419 AGTCAACCCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACCGTATG
Found at i:33207192 original size:12 final size:12
Alignment explanation
Indices: 33207175--33207206 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
33207165 CCCCCCTTCG
33207175 TGCTACCGATCC
1 TGCTACCGATCC
33207187 TGCTACCGATCC
1 TGCTACCGATCC
33207199 TGCTACCG
1 TGCTACCG
33207207 TAACCCTCGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.16, C:0.41, G:0.19, T:0.25
Consensus pattern (12 bp):
TGCTACCGATCC
Found at i:33207277 original size:25 final size:26
Alignment explanation
Indices: 33207228--33207279 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
33207218 CTGGTCTGAT
*
33207228 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTACGTATG
* *
33207254 CTTAGACTGGG-ATGACCTATGTATG
1 CTTAGACTGGGAATGAACTACGTATG
33207279 C
1 C
33207280 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 12 0.52
26 11 0.48
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:33207582 original size:172 final size:171
Alignment explanation
Indices: 33207274--33207585 Score: 376
Period size: 172 Copynumber: 1.8 Consensus size: 171
33207264 GATGACCTAT
* *
33207274 GTATGCCTAAGTCAACCCACAAAAACGAGCGTGTGGGTGCTCAACCGGCCGAAGAGGCATAATGC
1 GTATGCCTAAGTCAACCCACAAAAACGAGCGTGTGGGTGCTCAACCAGCCGAAGAGGCAGAATGC
** * * * * *
33207339 GTAAGTCGAGGATCAGCCGATCCCCTTCTGCGTGCTGTCGATCCCGTTACCGGTCCTGCTGCCAC
66 ACAAGCCGAGGATCACCCGATCCCCTCCTGCGTGCTGTCGATCCCGTTACCAGTCCTACTGCCAC
33207404 AACCCTCGGTTTGACTGAGGCTTTAGACATGAATGAACTCC
131 AACCCTCGGTTTGACTGAGGCTTTAGACATGAATGAACTCC
* ** * * * *
33207445 GTATGCCTAAGTGAACCCA-TGAAATGAGTGTGTGGGTGCTCAGCCAGCCGGAGAGGGCAGAATG
1 GTATGCCTAAGTCAACCCACAAAAACGAGCGTGTGGGTGCTCAACCAGCCGAAGA-GGCAGAATG
* * * * *
33207509 CACAAGCCGGGGATCGACCCGAT-CCCTCCCTGCGTGCTGTCGATCCTGTTACTATTCCTACTGT
65 CACAAGCCGAGGATC-ACCCGATCCCCT-CCTGCGTGCTGTCGATCCCGTTACCAGTCCTACTGC
**
33207573 CGTAACCCTCGGT
128 CACAACCCTCGGT
33207586 CCGGTCTGAT
Statistics
Matches: 115, Mismatches: 23, Indels: 5
0.80 0.16 0.03
Matches are distributed among these distances:
170 28 0.24
171 41 0.36
172 46 0.40
ACGTcount: A:0.22, C:0.29, G:0.27, T:0.22
Consensus pattern (171 bp):
GTATGCCTAAGTCAACCCACAAAAACGAGCGTGTGGGTGCTCAACCAGCCGAAGAGGCAGAATGC
ACAAGCCGAGGATCACCCGATCCCCTCCTGCGTGCTGTCGATCCCGTTACCAGTCCTACTGCCAC
AACCCTCGGTTTGACTGAGGCTTTAGACATGAATGAACTCC
Found at i:33207625 original size:26 final size:26
Alignment explanation
Indices: 33207596--33207648 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
33207586 CCGGTCTGAT
33207596 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
33207622 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
33207648 C
1 C
33207649 CTAAGTAAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:33208139 original size:26 final size:26
Alignment explanation
Indices: 33208098--33208150 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33208088 CCGGTTTGAT
33208098 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
33208124 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCATATG
33208150 C
1 C
33208151 CTAAGTCAAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:33209153 original size:159 final size:158
Alignment explanation
Indices: 33208890--33209247 Score: 373
Period size: 159 Copynumber: 2.3 Consensus size: 158
33208880 GGGGATGCAA
* * ** *
33208890 AATGCGCAAG-TCGGGGATCGACCCAGTCCCCCCTGCGTGCTATCAATCCTACTGTCTCAACCCT
1 AATGCGCAAGCT-GGGGATCGGCCCAGTCCCCCCTGCGTGCTATCAATCCCACTACCACAACCCT
* * * * **
33208954 CGGTCCGATTCGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACAAACG
65 CGGTCCGACTCGAGCTCAGACTGGGAATGAACTCCGTATGCATAAGCCAACCCACAAAACAAACG
* * *
33209019 TTTGGGTGC-CGAGC-CAGCCGAAGAGGCAT
130 TGTGGGCGCTC-AGCTCA-CCGAAGAGGCAG
* * **
33209048 AATGCGCAAGCTGGGGATCGGCCCAGTCCCCCTTTGTGTGCTATCGGTCCCACTACCACAACCCT
1 AATGCGCAAGCTGGGGATCGGCCCAGTCCCCC-CTGCGTGCTATCAATCCCACTACCACAACCCT
* * * * ***
33209113 CGGTCCGACTGGGGCTCAGACAT-GGAATGAACTCCTTATGCCTAAGCCAACCCACAAAATGGAC
65 CGGTCCGACTCGAGCTCAGAC-TGGGAATGAACTCCGTATGCATAAGCCAACCCACAAAACAAAC
*
33209177 GTGTGGGCGCTCAGCTCACCGGAGAGGCAG
129 GTGTGGGCGCTCAGCTCACCGAAGAGGCAG
* * * *
33209207 AATGCACAAGCCGGGGATCGGCCCAGTCCCTCATGCGTGCT
1 AATGCGCAAGCTGGGGATCGGCCCAGTCCCCCCTGCGTGCT
33209248 GCCGATCCTG
Statistics
Matches: 164, Mismatches: 31, Indels: 10
0.80 0.15 0.05
Matches are distributed among these distances:
158 36 0.22
159 124 0.76
160 4 0.02
ACGTcount: A:0.23, C:0.31, G:0.26, T:0.19
Consensus pattern (158 bp):
AATGCGCAAGCTGGGGATCGGCCCAGTCCCCCCTGCGTGCTATCAATCCCACTACCACAACCCTC
GGTCCGACTCGAGCTCAGACTGGGAATGAACTCCGTATGCATAAGCCAACCCACAAAACAAACGT
GTGGGCGCTCAGCTCACCGAAGAGGCAG
Found at i:33209313 original size:25 final size:26
Alignment explanation
Indices: 33209285--33209336 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
33209275 CTGGTCCGAT
33209285 CTTAGACTG-GAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
* *
33209310 CTTAGTCTGAGGATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
33209336 C
1 C
33209337 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 8 0.33
26 16 0.67
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:33209715 original size:26 final size:26
Alignment explanation
Indices: 33209677--33209729 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
33209667 CTGGTTTGAT
33209677 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
33209703 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
33209729 C
1 C
33209730 CTAAGCCAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:33210207 original size:26 final size:26
Alignment explanation
Indices: 33210178--33210230 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33210168 CCGATCCGAT
33210178 CTTAGACT-GAGAATGAACTCCGTATG
1 CTTAGACTAG-GAATGAACTCCGTATG
*
33210204 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
33210230 C
1 C
33210231 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:33211445 original size:26 final size:26
Alignment explanation
Indices: 33211413--33211465 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33211403 TTGGTATGAT
33211413 CTTAGAC-TGGGAATGAACTCCATATG
1 CTTAGACAT-GGAATGAACTCCATATG
*
33211439 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCATATG
33211465 C
1 C
33211466 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:33211938 original size:158 final size:155
Alignment explanation
Indices: 33211439--33211938 Score: 408
Period size: 158 Copynumber: 3.2 Consensus size: 155
33211429 ACTCCATATG
** * *
33211439 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
1 CTTAGACATGGAATGAACTCTATATGCCTAAGCCAA-CCACGAAAAG-GCGTGCGGGCGCTCAGC
* * *
33211504 CGGTCGGAA-AGGCAGAAT-GCGCAAGCC-AGGGATCGGCCCGGTCCCC-CTGCGTGCTATCGAT
64 CGG-CCGAAGAGGCAGAATAG-GCAAGCCGA-GGATCGGCCCGGTCCCCTCTACATGCTATCGAT
*
33211565 CCTGCTGCCGCAACCCTCGGTCTGGTTTGAT
126 CCTGCT-CCGCAACCCTCGGTCTGGTCTGAT
* * * * * * *
33211596 CTTACAC-TAGGAATGAACT-TCATCTGCCTAAGTCAAACCATGAAACAAGCGTGCGGGCGTTGA
1 CTTAGACAT-GGAATGAACTCT-ATATGCCTAAG-CCAACCACGAAA-AGGCGTGCGGGCGCTCA
* * * * * * * * * *
33211659 GCTGGCC-AGAGAGGCATAATACGCAAGTCGGGGATCGGCTCGATCCCCCTTTACATGCTATTGG
62 GCCGGCCGA-AGAGGCAGAATAGGCAAGCCGAGGATCGGCCCGGT-CCCCTCTACATGCTATCGA
* * * ** * **
33211723 TCCCGCTGCACAAAGCTCGGTCCGG-CTGGGG
125 TCCTGCTCCGCAACCCTCGGTCTGGTCT-GAT
* * *
33211754 CTTAGACATGGAATGAACTC-ACTATGCCTAAGCCAACCTACGAAATAGGTGTGCGGGTGCTCAA
1 CTTAGACATGGAATGAACTCTA-TATGCCTAAGCCAACC-ACGAAA-AGGCGTGCGGGCGCTCAG
* * **
33211818 CCAGCCGAAGAGGCAGAGTAGGCAAGCCGAGGATCAACCCGGTCCCCTCTACATGCTATCGATCC
63 CCGGCCGAAGAGGCAGAATAGGCAAGCCGAGGATCGGCCCGGTCCCCTCTACATGCTATCGATCC
33211883 TGCTACCGCAACCCTCGGTCTGGTCTGAT
128 TGCT-CCGCAACCCTCGGTCTGGTCTGAT
33211912 CTTAGAC-TGGGAATGAACTCTATATGC
1 CTTAGACAT-GGAATGAACTCTATATGC
33211939 TTAGACTGGG
Statistics
Matches: 257, Mismatches: 66, Indels: 39
0.71 0.18 0.11
Matches are distributed among these distances:
155 1 0.00
156 3 0.01
157 103 0.40
158 130 0.51
159 20 0.08
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (155 bp):
CTTAGACATGGAATGAACTCTATATGCCTAAGCCAACCACGAAAAGGCGTGCGGGCGCTCAGCCG
GCCGAAGAGGCAGAATAGGCAAGCCGAGGATCGGCCCGGTCCCCTCTACATGCTATCGATCCTGC
TCCGCAACCCTCGGTCTGGTCTGAT
Found at i:33212511 original size:25 final size:26
Alignment explanation
Indices: 33212476--33212527 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
33212466 CGTGTCCGAT
* *
33212476 CTTAGATTGGAAA-GAACTCCTTATG
1 CTTAGACTGGAAATGAACTCCGTATG
33212501 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
33212527 C
1 C
33212528 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 12 0.50
26 12 0.50
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:33212846 original size:26 final size:26
Alignment explanation
Indices: 33212817--33212869 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
33212807 CCGGTCTGAT
33212817 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
33212843 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
33212869 C
1 C
33212870 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:33213225 original size:26 final size:25
Alignment explanation
Indices: 33213196--33213266 Score: 106
Period size: 26 Copynumber: 2.7 Consensus size: 25
33213186 CCGGTTCGAT
33213196 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACT-GGAATGAACTTCGTATG
33213222 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGAC-TGGAATGAACTTCGTATG
*
33213248 CTTAGACAAGGAATGAACT
1 CTTAGAC-TGGAATGAACT
33213267 CCATGCTGCC
Statistics
Matches: 43, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
26 42 0.98
27 1 0.02
ACGTcount: A:0.32, C:0.15, G:0.24, T:0.28
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTTCGTATG
Found at i:33213498 original size:284 final size:284
Alignment explanation
Indices: 33212999--33213532 Score: 685
Period size: 284 Copynumber: 1.9 Consensus size: 284
33212989 TGCCGGTCCT
* * *
33212999 GCTGCCAAAACCCTCGGCCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCATAAGGAAAC
1 GCTGCCAAAACCCTCGGCCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCATAAGCAAAC
* * * * * *
33213064 CCATGAAACAAGCGTGCGGGTGCTCAACCGATCGAGAGGCAGAATGCACAAGCCAAGGATTGGCC
66 CCATGAAACAAGAGTGCAGGCGCTCAACCAACCGAGAGGCAGAATGCACAAGCCAAGGACTGGCC
* * * * *
33213129 CGGTCCCTCCTACGTGCTGTCGATCTTGCTACTGGTCCTGCTGCCGCAACCTTTGGTCCGGTTCG
131 CGGTCCCTCCTACGTGCTGTCGATCCTGCTACTGGTCCTGCTACCGCAACCCTCGGTCCGGTCCG
* *
33213194 ATCTTAGACTGGGAATGAACTTCGTATGCTTAGACATGGAATGAACTTCGTATGCTTAGACAAGG
196 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCTTAGACAAGG
33213259 AATGAACTCCATGCTGCCGGTTTC
261 AATGAACTCCATGCTGCCGGTTTC
* * * *
33213283 GCTGCCACAACCCTCGGTCCGACT-GGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
1 GCTGCCAAAACCCTCGGCCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCATAAGCAAAC
** * * * * * **
33213347 CCATGAAACGGGAGTGTAGGCGCTCAGCCAACCGAAGAGGCGGAATGCGCAAGTCGGGGACTGGC
66 CCATGAAACAAGAGTGCAGGCGCTCAACCAACCG-AGAGGCAGAATGCACAAGCCAAGGACTGGC
* ** * ** * *
33213412 TCGGTCCC-CTCTGGGTGTTGTCGATCCTGCTGTTGGTCCTGCTATCGCAACCCTCGGTCTGGTC
130 CCGGTCCCTC-CTACGTGCTGTCGATCCTGCTACTGGTCCTGCTACCGCAACCCTCGGTCCGGTC
* *
33213476 CGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACGTGGAATGAACTCCGTATGC
194 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGC
33213533 CTAAGCCAAC
Statistics
Matches: 209, Mismatches: 39, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
283 62 0.30
284 147 0.70
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.23
Consensus pattern (284 bp):
GCTGCCAAAACCCTCGGCCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCATAAGCAAAC
CCATGAAACAAGAGTGCAGGCGCTCAACCAACCGAGAGGCAGAATGCACAAGCCAAGGACTGGCC
CGGTCCCTCCTACGTGCTGTCGATCCTGCTACTGGTCCTGCTACCGCAACCCTCGGTCCGGTCCG
ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCTTAGACAAGG
AATGAACTCCATGCTGCCGGTTTC
Found at i:33213889 original size:159 final size:158
Alignment explanation
Indices: 33213515--33213936 Score: 463
Period size: 159 Copynumber: 2.7 Consensus size: 158
33213505 GCTTAGACGT
* * *
33213515 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGTGCTTAGCCGATCGGAG
1 GGAATGAACTCCGTATGCATAAGCCAACCCATGAAACAAGCGTGCGGGTGCTCAGCCGACCGGAG
* * * * * *
33213580 AGGCAGAATGCACAAGCCGGGGATCGGCCCGATCCCCCCTACGTGCTGTCGATCCTGCTGTCGCA
66 AGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTACGTGATGTAGATCCCGCTGCCACA
* * * *
33213645 ACCCTCGGTCTGATCTGATCTTAGACTG
131 ACCCTCAGTCCGATCTGAGCTTAAACTG
* * * * * *
33213673 GGAATGAACTCCGTATGCATAAGTCAACCCATGAAACAAGTGTGTGGGCGCTGAGCCGACCGAAG
1 GGAATGAACTCCGTATGCATAAGCCAACCCATGAAACAAGCGTGCGGGTGCTCAGCCGACCGGAG
* * * * *
33213738 AGGCATAATGCGTAAGCCGGGGGTCGGCCCGGTCCCCCTCTGCGTGATGCTAG-TCCCGCTGCCA
66 AGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCC-CTACGTGATG-TAGATCCCGCTGCCA
* * *
33213802 CAATCCTCAGTCCGGT-TGGGGCTTAAACAT-
129 CAACCCTCAGTCCGATCT-GAGCTTAAAC-TG
* * * * * *
33213832 GTAATGAACTCCCTATGCATAAGCCAACCCATGAAACGAGCATGCGGGTGCTCAGCCGGCTGGAG
1 GGAATGAACTCCGTATGCATAAGCCAACCCATGAAACAAGCGTGCGGGTGCTCAGCCGACCGGAG
* * *
33213897 AGGTAGAATGTGCAAGTCGGGGATCGGCCCGATCCCCCCT
66 AGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCT
33213937 GTCTGCAACC
Statistics
Matches: 215, Mismatches: 45, Indels: 8
0.80 0.17 0.03
Matches are distributed among these distances:
158 93 0.43
159 119 0.55
160 3 0.01
ACGTcount: A:0.23, C:0.29, G:0.29, T:0.19
Consensus pattern (158 bp):
GGAATGAACTCCGTATGCATAAGCCAACCCATGAAACAAGCGTGCGGGTGCTCAGCCGACCGGAG
AGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTACGTGATGTAGATCCCGCTGCCACA
ACCCTCAGTCCGATCTGAGCTTAAACTG
Found at i:33215054 original size:26 final size:26
Alignment explanation
Indices: 33215025--33215077 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
33215015 CCAGTCCGAT
33215025 CTTAGAC-TAGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
33215051 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
33215077 C
1 C
33215078 CTAAGGCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:33215566 original size:26 final size:26
Alignment explanation
Indices: 33215528--33215577 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
33215518 GTCATATCTC
*
33215528 AGACTGGGAATGAACTCTGTATGCTT
1 AGACTGGGAATGAACTCCGTATGCTT
*
33215554 AGACTGGGGATGAACTCCGTATGC
1 AGACTGGGAATGAACTCCGTATGC
33215578 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.18, G:0.30, T:0.26
Consensus pattern (26 bp):
AGACTGGGAATGAACTCCGTATGCTT
Found at i:33217236 original size:132 final size:132
Alignment explanation
Indices: 33217007--33217271 Score: 460
Period size: 132 Copynumber: 2.0 Consensus size: 132
33216997 GACATGTTCA
**
33217007 CCCAAAAGAATCAGACCTTGGAGGCTGAAATGCTGACCTTGTGCGATGGCATGGAGGCCATGCAC
1 CCCAAAAGAATCAGACCTTGGAGGCTGAAATGCTGACCTTGCACGATGGCATGGAGGCCATGCAC
*
33217072 CAGCGGATGGAAGAGCTTACCAGTGAGCTCGTTGCTTACAAGACTGCCATTGGGAATGGCATGTT
66 CAGCGGATGGAAGAGCTTACCAGTGAGCTCGTTACTTACAAGACTGCCATTGGGAATGGCATGTT
33217137 TG
131 TG
*
33217139 CCCAAAAGAATCAGACCTTGGAGGCT-AAAGTGCTGACCTTGCACGATGGCATGGAGGGCATGCA
1 CCCAAAAGAATCAGACCTTGGAGGCTGAAA-TGCTGACCTTGCACGATGGCATGGAGGCCATGCA
* *
33217203 CCAGCGGATGGAGGAGCTTACCAGTGAGCTCGTTACTTGCAAGACTGCCATTGGGAATGGCATGT
65 CCAGCGGATGGAAGAGCTTACCAGTGAGCTCGTTACTTACAAGACTGCCATTGGGAATGGCATGT
33217268 TTG
130 TTG
33217271 C
1 C
33217272 TGAGTGTCCA
Statistics
Matches: 126, Mismatches: 6, Indels: 2
0.94 0.04 0.01
Matches are distributed among these distances:
131 3 0.02
132 123 0.98
ACGTcount: A:0.26, C:0.22, G:0.31, T:0.22
Consensus pattern (132 bp):
CCCAAAAGAATCAGACCTTGGAGGCTGAAATGCTGACCTTGCACGATGGCATGGAGGCCATGCAC
CAGCGGATGGAAGAGCTTACCAGTGAGCTCGTTACTTACAAGACTGCCATTGGGAATGGCATGTT
TG
Found at i:33222813 original size:158 final size:160
Alignment explanation
Indices: 33222224--33222821 Score: 490
Period size: 158 Copynumber: 3.8 Consensus size: 160
33222214 AACTCGTATG
* * * *
33222224 CTTAGATATGGAACTAAACTCCGTATGCCTAAGCCAACCCACGGAAACGAGCGT--GGGCACTCA
1 CTTAGACATGGAA-TAAACTCCCTATGCCTAAGCCAACCCAC-GAAACAAGCGTGCGGGCGCTCA
* * * * * *
33222287 GTCGG-TCGAAGAGGTAGAATGCGCAAGTCGGGGATCAACTCGGTCCTCC-CTGCGTGCTGTCGA
64 GTCGGACCGAAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGGTCCCCCTCTGCGTGCTGTCGG
* * ** **
33222350 TCCTATTGCCACGAACCCTCGGTCCGGTCAGAT
129 TCCCACTGCCAC-AACCCTCGGTCCGGTTGGGC
* ** * * * * * *
33222383 CTTAGAC-TGGGAATGAACT-TGTATGCATAAGTCAACCCATGGAAATAAGCGTGCGGGCGTTGA
1 CTTAGACAT-GGAATAAACTCCCTATGCCTAAGCCAACCCA-CGAAACAAGCGTGCGGGCGCTCA
* * * * * * * * * * *
33222446 GCCGGCCCAAAGAGGCATAATGCGGCCAAGCCAGAGATTGGCCCGATCCCCCTCTGTGTGCTGTC
64 GTCGGACCGAAGAGGCAGAATGC-G-CAAGTCGGGGATCGACCCGGTCCCCCTCTGCGTGCTGTC
* * * *
33222511 GGTCCCACTGCCACAAGCCTTGGTCCGGCTGGGG
127 GGTCCCACTGCCACAACCCTCGGTCCGGTTGGGC
* *** * *
33222545 CTTAAGA-ATGGAATGAACTCCCTATGCCTAAGCC-ACCCACGAAATGGGCGTGCAGGCGCTGAG
1 CTT-AGACATGGAATAAACTCCCTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAG
* * * * * ** *
33222608 -CTGACCGAAGAGGCATAGTGCACAAGTCGTGGATC-AGCTTGGTCCCCCTCTACGTGCTGTCGG
65 TCGGACCGAAGAGGCAGAATGCGCAAGTCGGGGATCGA-CCCGGTCCCCCTCTGCGTGCTGTCGG
33222671 TCCCACTGCCACAACCCTCGCGTCC-GTTGGGC
129 TCCCACTGCCACAACCCTCG-GTCCGGTTGGGC
33222703 CTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAGT
1 CTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAGT
*
33222768 C-GACC--AGAGAGCAGAATGTGCAAG-CGGGGATCGACCCGGTCCCCC-CTGCGTGCT
66 CGGACCGAAGAG-GCAGAATGCGCAAGTCGGGGATCGACCCGGTCCCCCTCTGCGTGCT
33222822 ATCGATCCTG
Statistics
Matches: 342, Mismatches: 79, Indels: 39
0.74 0.17 0.08
Matches are distributed among these distances:
156 8 0.02
157 49 0.14
158 98 0.29
159 52 0.15
160 31 0.09
161 20 0.06
162 48 0.14
163 36 0.11
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (160 bp):
CTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAGT
CGGACCGAAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGGTCCCCCTCTGCGTGCTGTCGGTC
CCACTGCCACAACCCTCGGTCCGGTTGGGC
Found at i:33223826 original size:26 final size:26
Alignment explanation
Indices: 33223797--33223849 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
33223787 CCGATCCGAT
33223797 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
33223823 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
33223849 C
1 C
33223850 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:33224327 original size:26 final size:26
Alignment explanation
Indices: 33224298--33224350 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
33224288 CCGATCCAAT
33224298 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
33224324 CTTATACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
33224350 C
1 C
33224351 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:33225399 original size:26 final size:26
Alignment explanation
Indices: 33225358--33225410 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
33225348 CCAGTTTGAT
33225358 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
33225384 CTTAGACT-GGAGATGAACTTCGTATG
1 CTTAGACTGGGA-ATGAACTTCGTATG
33225410 C
1 C
33225411 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 3 0.12
26 20 0.80
27 2 0.08
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:33225522 original size:26 final size:26
Alignment explanation
Indices: 33225493--33225545 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33225483 CCGGTCCGAT
33225493 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
33225519 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCCGTATG
33225545 C
1 C
33225546 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:33225875 original size:183 final size:182
Alignment explanation
Indices: 33225484--33225886 Score: 404
Period size: 182 Copynumber: 2.2 Consensus size: 182
33225474 CAGAAATGTC
* * * *
33225484 CGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCTGTATGCCTA
1 CGGTCAGAGCTTAGACTAGGAATGAACTCCGTATGCTTAG--ATGGAATGAAATCTGTATGCCTA
* * * * *
33225549 AGCCAACCCACGAAACAACCTTGCGGGTGCTCAGCCGGTCGGACAAGCAGAATGTGCAAGCCAAG
64 AGCCAACCCACGAAACAACCGTGCGGGCGCTCAACCGGCCGGACAAGCAGAATGCGCAAGCCAAG
* * ** *
33225614 GATCGGCCCGATCCCCCCTGCGTGCTGTCGATCCTGCTCTCGCAACCCTCGGTT
129 GATCGACCCGATCCCCCCTGCGTGCTGCCGATCCCACTCTCACAACCCTCGGTT
* * *
33225668 CGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAG-TGGTGATGAAATCTGTATGCCTAA
1 CGGTCAGAGCTTAGACTAGGAATGAACTCCGTATGCTTAGATGG-AATGAAATCTGTATGCCTAA
* * * * * * * * * * *
33225732 GTCAACCCATGAAACGAGCGTGCGGGCGCTCAATCGGCCGGAGAGGCATAATGCGTAAGTCGAGG
65 GCCAACCCACGAAACAACCGTGCGGGCGCTCAACCGGCCGGACAAGCAGAATGCGCAAGCCAAGG
*
33225797 ATCGACCCGGTCCCCCTCTGCGTGCTGCC-AGTCCCACTGC-CACAACCCTCGG-T
130 ATCGACCCGATCCCCC-CTGCGTGCTGCCGA-TCCCACT-CTCACAACCCTCGGTT
* *
33225850 CTGG-CTAGGGCTTAGAC-ATGGAATGAACTCCCTATGC
1 C-GGTC-AGAGCTTAGACTA-GGAATGAACTCCGTATGC
33225887 CTAAGCCAAC
Statistics
Matches: 183, Mismatches: 29, Indels: 15
0.81 0.13 0.07
Matches are distributed among these distances:
181 3 0.02
182 86 0.47
183 54 0.30
184 40 0.22
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.21
Consensus pattern (182 bp):
CGGTCAGAGCTTAGACTAGGAATGAACTCCGTATGCTTAGATGGAATGAAATCTGTATGCCTAAG
CCAACCCACGAAACAACCGTGCGGGCGCTCAACCGGCCGGACAAGCAGAATGCGCAAGCCAAGGA
TCGACCCGATCCCCCCTGCGTGCTGCCGATCCCACTCTCACAACCCTCGGTT
Found at i:33226784 original size:26 final size:26
Alignment explanation
Indices: 33226742--33226794 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
33226732 GGCTCAAACT
33226742 CTTAGACTGGAATTGAACTCCGTATG
1 CTTAGACTGGAATTGAACTCCGTATG
33226768 CTTAGACATGGAA-TGAACTCCGTATG
1 CTTAGAC-TGGAATTGAACTCCGTATG
33226794 C
1 C
33226795 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 21 0.81
27 5 0.19
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAATTGAACTCCGTATG
Found at i:33227125 original size:26 final size:26
Alignment explanation
Indices: 33227084--33227136 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
33227074 CTGATCCAAT
33227084 CTTAGACTGGAAATGAACTCCGGATG
1 CTTAGACTGGAAATGAACTCCGGATG
** *
33227110 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGGATG
33227136 C
1 C
33227137 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGGATG
Found at i:33227493 original size:26 final size:26
Alignment explanation
Indices: 33227464--33227516 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
33227454 ACGGTCCGAT
33227464 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
33227490 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
33227516 C
1 C
33227517 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:33227994 original size:26 final size:26
Alignment explanation
Indices: 33227965--33228017 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
33227955 TCGGTCCGAT
33227965 CTTAGACTCAAAATGAACTCCGTATG
1 CTTAGACTCAAAATGAACTCCGTATG
****
33227991 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTCAAAATGAACTCCGTATG
33228017 C
1 C
33228018 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTCAAAATGAACTCCGTATG
Found at i:33228616 original size:11 final size:11
Alignment explanation
Indices: 33228596--33228628 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
33228586 CAGTTAGGCT
*
33228596 CTCCGGCGATG
1 CTCCGACGATG
33228607 CTCCGACGATG
1 CTCCGACGATG
33228618 CTCCGACGATG
1 CTCCGACGATG
33228629 GTGCCCCGAG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.15, C:0.36, G:0.30, T:0.18
Consensus pattern (11 bp):
CTCCGACGATG
Found at i:33228739 original size:26 final size:26
Alignment explanation
Indices: 33228698--33228750 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
33228688 GGTTCAAACT
33228698 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
33228724 CTTAGACTAGGG-ATGAACTCTGTATG
1 CTTAGACT-GGGAATGAACTCTGTATG
33228750 C
1 C
33228751 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:33229066 original size:21 final size:21
Alignment explanation
Indices: 33229040--33229084 Score: 90
Period size: 21 Copynumber: 2.1 Consensus size: 21
33229030 ACCGACCTGA
33229040 ATGCCTTATTTGCTTTCATGG
1 ATGCCTTATTTGCTTTCATGG
33229061 ATGCCTTATTTGCTTTCATGG
1 ATGCCTTATTTGCTTTCATGG
33229082 ATG
1 ATG
33229085 GGCTGAAACC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.16, C:0.18, G:0.20, T:0.47
Consensus pattern (21 bp):
ATGCCTTATTTGCTTTCATGG
Found at i:33233156 original size:159 final size:159
Alignment explanation
Indices: 33232993--33233281 Score: 339
Period size: 159 Copynumber: 1.8 Consensus size: 159
33232983 GATCCCCAGC
* * * * *
33232993 TTGCGCATTATGCCTCTCTAGCCAGCTCAGTGCCCGT-ACATTTGTTTCATGGGTT-GACTTAGG
1 TTGCGCATTATGCCTCTCCAGCCAGCTAAGCG-CCGTCACACTCGTTTCATGGGTTGGA-TTAGG
* *
33233056 CATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACTGAGGGTTACAGTAGCAAGATCAACAG
64 CATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACCGAGGGTTACAGTAGCAAGACCAACAG
33233121 CACCCAAGGGGGGACCGGGTCAATCCATGAG
129 CACCCAAGGGGGGACCGGGTCAATCCATGAG
* * * * * * * * **
33233152 TTGCGCATTTTGGCTCTCCGGTCGGCTAAGCGTCTTCACGCTCGTTTTGTGGGTTGGATTAGGCA
1 TTGCGCATTATGCCTCTCCAGCCAGCTAAGCGCCGTCACACTCGTTTCATGGGTTGGATTAGGCA
* * ** * *
33233217 TACGGAGTTCATTCCTAGTCTAAGATTGGACTGGACCGAGGGTTGCAGTAGCAGGACCAACAGCA
66 TACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACCGAGGGTTACAGTAGCAAGACCAACAGCA
33233282 TGATCGACAA
Statistics
Matches: 105, Mismatches: 23, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
158 2 0.02
159 101 0.96
160 2 0.02
ACGTcount: A:0.22, C:0.24, G:0.28, T:0.26
Consensus pattern (159 bp):
TTGCGCATTATGCCTCTCCAGCCAGCTAAGCGCCGTCACACTCGTTTCATGGGTTGGATTAGGCA
TACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACCGAGGGTTACAGTAGCAAGACCAACAGCA
CCCAAGGGGGGACCGGGTCAATCCATGAG
Found at i:33233459 original size:170 final size:171
Alignment explanation
Indices: 33233188--33233581 Score: 383
Period size: 171 Copynumber: 2.3 Consensus size: 171
33233178 TAAGCGTCTT
* * *
33233188 CACGCTCGTTTTGTGGGTTGGATTAGGCATACGGAGTTCATTCCTAGTCTAAGATTGGACTGGAC
1 CACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGACTGGACTGGAC
* * * * * *
33233253 CGAGGGTTGCAGTAGCAGGACCAACAGCATGATCGACAACACGC-GGGGGGGATC--GGGTCGAT
66 CGAGGGTTGCAGCAGCAGGACCAACAGCAGGATCGACAACACACAGAGGAGGA-CAAGGCT-GAT
* * * * *
33233315 CCCTAGCTTGCGCATTCTGCCTTTCCAG-TTGGCT-AAGTGCTCG
129 CCCCAGCTTGCGCATTATGCCTCTCCAGCTT-GCTGAA-CGCCCG
*
33233358 CACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATA-TCTAA-ACCCCT-GTC-
1 CACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCC-TAGTCTAAGA---CTGGACT
* ** * ** * * *
33233419 GGATCGAGGGTTGTGGCAGTAGGACTGATAGCGGGATCGACAGCACACAGAGGAGGACAAGGCTG
62 GGACCGAGGGTTGCAGCAGCAGGACCAACAGCAGGATCGACAACACACAGAGGAGGACAAGGCTG
* **
33233484 ATCCCCGGCTTGCGCATTATGCCTCTCTGGCTTGCTGAACGCCCG
127 ATCCCCAGCTTGCGCATTATGCCTCTCCAGCTTGCTGAACGCCCG
* * *
33233529 CACGCTCGTTTCGTGCGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAG
1 CACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAG
33233582 CATACGGAGT
Statistics
Matches: 183, Mismatches: 30, Indels: 20
0.79 0.13 0.09
Matches are distributed among these distances:
169 1 0.01
170 86 0.47
171 88 0.48
172 8 0.04
ACGTcount: A:0.20, C:0.25, G:0.30, T:0.25
Consensus pattern (171 bp):
CACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGACTGGACTGGAC
CGAGGGTTGCAGCAGCAGGACCAACAGCAGGATCGACAACACACAGAGGAGGACAAGGCTGATCC
CCAGCTTGCGCATTATGCCTCTCCAGCTTGCTGAACGCCCG
Found at i:33233591 original size:26 final size:26
Alignment explanation
Indices: 33233555--33233606 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
33233545 GTTGACTTAG
33233555 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCACTCCC-AGTCTAA
33233581 GCATACGGAGTTCACTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
33233607 CATCAGACTG
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCACTCCCAGTCTAA
Found at i:33234107 original size:26 final size:26
Alignment explanation
Indices: 33234057--33234109 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
33234047 GTTGGCTTAG
* **
33234057 GCATACGGAGTTCTTTCCATGTCTAA
1 GCATACGGAGTTCATTCCACATCTAA
*
33234083 GCATACGGAGTTCATTCCCCATCTAA
1 GCATACGGAGTTCATTCCACATCTAA
33234109 G
1 G
33234110 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.26, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCACATCTAA
Found at i:33234138 original size:185 final size:184
Alignment explanation
Indices: 33233898--33234268 Score: 456
Period size: 184 Copynumber: 2.0 Consensus size: 184
33233888 GTTGACTTAT
* * * *
33233898 GCATACGGAGTTCATTCCTAGTCTAAGATTAGATCAGATCGAGGGTTATGGCAGCACGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTACGGCAGCACGATCGACA
* * *
33233963 GCACACAGGGAGGGACCGGGCCGATCTCAAGCTTACACATTCTGCCTCTCCGACCGGCTGAGCGC
66 ACACACAGGG-GGGACCGGGCCGATCCCAAGCTGACACATTCTGCCTCTCCGACCGGCTGAGCGC
* * * *
33234028 CCGCACGCTCGTTTCGAGGGTTGGCTTAGGCATACGGAGTTCTTTCCATGTCTAA
130 CCGCACGCTCATTTCGAGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTATAA
* * * * **
33234083 GCATACGGAGTTCATTCCCCA-TCTAAGATCAGACCGGATTGAGGGTTACGGCAGCAGGATTGGT
1 GCATACGGAGTTCATT-CCCAGTCTAAGATCAGACCAGATCGAGGGTTACGGCAGCACGATCGAC
** * * * ** * * *
33234147 AACACGTAGGGGGGATCGGGTCGGTCCCCGGCTGGCGCATTCTGCCTCTCCGGCCGGCTGAGCGC
65 AACACACAGGGGGGACCGGGCCGATCCCAAGCTGACACATTCTGCCTCTCCGACCGGCTGAGCGC
* *
33234212 CCGTACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTATAA
130 CCGCACGCTCATTTCGAGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTATAA
33234267 GC
1 GC
33234269 CCCAGTTGGA
Statistics
Matches: 156, Mismatches: 29, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
184 95 0.61
185 58 0.37
186 3 0.02
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (184 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTACGGCAGCACGATCGACA
ACACACAGGGGGGACCGGGCCGATCCCAAGCTGACACATTCTGCCTCTCCGACCGGCTGAGCGCC
CGCACGCTCATTTCGAGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTATAA
Found at i:33234441 original size:26 final size:26
Alignment explanation
Indices: 33234411--33234463 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
33234401 GTTGACTTAG
33234411 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
33234437 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
33234463 G
1 G
33234464 ATCGAACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:33234814 original size:159 final size:159
Alignment explanation
Indices: 33234561--33234867 Score: 346
Period size: 159 Copynumber: 1.9 Consensus size: 159
33234551 CGATCGAATG
* * * * *
33234561 AGCACCCGCACGCTCATTTCGTGGGTTGGCTTCGGCATAGGGAGTTAATTCCATGTCTAAGCCCC
1 AGCACCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTAATTCCATGTCTAAGACCC
* *** * ** * * *
33234626 AATCGGACCGAGGGTTGTGGCAGCGGGATCGGTAGCACGTAAAAGGG-GGCCGGGTCGATCCCCA
66 AACCGGACCGAGGGTTGCAACAGCAGGATCGACAGCACAT-AAAGGGAGACCGCGTCGATCCCCA
33234690 GCATGCGCATTATGCCTCTTCAGTCAGATC
130 GCATGCGCATTATGCCTCTTCAGTCAGATC
* * * ***
33234720 AGCACCCGCACGCTCATTTCATGGGTTGACTTATGCATACGGAGTTCATTCCTTGTCTAAGATTG
1 AGCACCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTAATTCCATGTCTAAGACCC
* * * * *
33234785 GACCGGACCGATGGTTGCAATAGCAGGATCGACAGCACATAGAGGGAGACCGCGTCGATCCCCGG
66 AACCGGACCGAGGGTTGCAACAGCAGGATCGACAGCACATAAAGGGAGACCGCGTCGATCCCCAG
* *
33234850 CTTGCGCATTTTGCCTCT
131 CATGCGCATTATGCCTCT
33234868 CCGATCGCCC
Statistics
Matches: 119, Mismatches: 28, Indels: 2
0.80 0.19 0.01
Matches are distributed among these distances:
158 5 0.04
159 114 0.96
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (159 bp):
AGCACCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTAATTCCATGTCTAAGACCC
AACCGGACCGAGGGTTGCAACAGCAGGATCGACAGCACATAAAGGGAGACCGCGTCGATCCCCAG
CATGCGCATTATGCCTCTTCAGTCAGATC
Found at i:33236086 original size:158 final size:159
Alignment explanation
Indices: 33235742--33236113 Score: 405
Period size: 158 Copynumber: 2.4 Consensus size: 159
33235732 TGAAGCACCG
* * * *
33235742 CCACAC-CT-GTTTCGTGGGTTTGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCG
1 CCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATATCTAAGACCTAGCCG
* * * * *
33235805 GACCAAGGGTTGTGGCAACGGGATCGACAGCACGCAGAGGGGGACCGGGCCCATCCCTGGCTTAC
66 GACCAAGGGTTGCGGCAACAGGATCGACAGCACACAGAGGGGGACCAGGCCCATCCCCGGCTTAC
* * * *
33235870 GCATTATGCCTCTCTGATTGGCTCAGCGC
131 GCATTATACCTCTCCGATCGGCTCAACGC
* * *
33235899 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-ATCTAAGATC-AGAC
1 CCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATATCTAAGACCTAG-C
* * * * * *
33235962 CGTATCGAGGGTTGCGGCAGCAGGATCGACAGCACACA-TGGGGGACCAGGCCGATCCCCGGC-T
64 CGGACCAAGGGTTGCGGCAACAGGATCGACAGCACACAGAGGGGGACCAGGCCCATCCCCGGCTT
* * *
33236025 AGCGCATTCTACCTCTCCGATCGGCTGAATGC
129 A-CGCATTATACCTCTCCGATCGGCTCAACGC
* * * *
33236057 CCACACGCTCGTTTCATAGGTTGGCTTAGGCATATGGAGTTCATTTCCATCTCTAAG
1 CCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCA-TTCCATATCTAAG
33236114 CATACGGAGT
Statistics
Matches: 177, Mismatches: 31, Indels: 12
0.80 0.14 0.05
Matches are distributed among these distances:
157 7 0.04
158 88 0.50
159 79 0.45
160 3 0.02
ACGTcount: A:0.20, C:0.28, G:0.28, T:0.24
Consensus pattern (159 bp):
CCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATATCTAAGACCTAGCCG
GACCAAGGGTTGCGGCAACAGGATCGACAGCACACAGAGGGGGACCAGGCCCATCCCCGGCTTAC
GCATTATACCTCTCCGATCGGCTCAACGC
Found at i:33236483 original size:26 final size:26
Alignment explanation
Indices: 33236454--33236506 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
33236444 GTTGACTTAG
*
33236454 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
33236480 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
33236506 G
1 G
33236507 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:33237574 original size:26 final size:26
Alignment explanation
Indices: 33237538--33237590 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
33237528 TCGATCCGAT
33237538 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
33237564 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
33237590 C
1 C
33237591 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:33239112 original size:26 final size:26
Alignment explanation
Indices: 33239083--33239135 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
33239073 CCGGTTTGAT
*
33239083 CTTAGACTG-GGAATAAACTCCGTATG
1 CTTAGACTGAGG-ATAAACTCCATATG
*
33239109 CTTAGACTGAGGATGAACTCCATATG
1 CTTAGACTGAGGATAAACTCCATATG
33239135 C
1 C
33239136 CTAAGTCAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGGATAAACTCCATATG
Found at i:33239401 original size:527 final size:518
Alignment explanation
Indices: 33237221--33239446 Score: 1487
Period size: 497 Copynumber: 4.3 Consensus size: 518
33237211 CCGGTCTGAT
* * * * *
33237221 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCTACGGAACGAGCGTGCGGGCGCTGAG
1 CTTAGACAT-GGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAG
** * * ** * * * * * * * *
33237285 CTAGTCGGAGAGGCATAATGCGTAAGCTGGGGATCGGTCTGGTCCCCCTCTGCATGCTGCCGGTG
65 CCGGTCGGAGAGGCAGAATGCGCAAGC-CAGAATCAGCCCGATCCCCCTCTGCGTGCTGTCGAT-
* * * * * *
33237350 C-CGCTGCCACAACCCTCAGTTCGGCTGGGGCTTAGACATTGAATAAACTCCCTATGCCTAAGCC
128 CTCGCTGCCACAACCCTCGGTCCGACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCC
* * * * * * * * * * *
33237414 AACCCATGAAACGGGCGTACGGTCGCTCAACCAGTCGGAGAGGAAGGATGCGTAAGTCGAGGATC
193 AACCCATGAAATGGGCGTGCGGGCGCTCAGCC-GGCCGA-AGGCAGAATGTGCAAGCCGAGGATC
* * ** * ** * * * *
33237479 GACTCGATCCCCCCTGCGTGCTATCGATTTTGCTGCCACAACCCTCGGTTCGATCCGATCTTAGA
256 GACTCGATCCCCCCTGCATGCTGTCGATCCTACTGCCGTAACCCTCAGTCCGGTTCGATCTTAGA
* *
33237544 CTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAA-CCTACGAA
321 CTGGGAATGAACTCCGTATGCTTAGACT-GGGATAAACTCCGTATGCCTAAGTCAATCC-ACGAA
* * * * * ** *
33237608 ACGAGCGTGCGAGCG--C--TCAGT--A-A-G-C---CGGAGAGGCAGAATGCACAA-CCAGGGG
384 CCGAGCATGCGGGCGACCAGTCGGTCGAGAGGTCGATCGGAGAGGCATAATGCGTAAGTC--GGG
* * *** ** *
33237660 ATC-GACCC-AGTCCCCC-CTGTGTG--CCG-T----C-G--ATCCTGCTGCTGTAACTTTTGGT
447 ACCAG-CCCGA-TCCCCCTCTGTGTGCTCCGATCCCACTGTCGTCCTGCTGCCACAACCCTCGGT
*
33237712 CCGATGTGA
510 CCGATGGGA
* * * * * * * *
33237721 TCTTAGA-TTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGTGCGCGGGCACTGA
1 -CTTAGACAT-GGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCA
* * * * * ** * * * *
33237785 GCCGGTC-AAGAGGC---ATCCGTAAGTCAGGGATTGGCCTGGTCCCCCTCTGCATGCTGTCGGT
64 GCCGGTCGGAGAGGCAGAATGCGCAAGCCA-GAATCAGCCCGATCCCCCTCTGCGTGCTGTCGAT
* * *
33237846 C-CAACTGCCACAACCCTCGGTCTGACTAGAGCTTAGACATGGAATGAACTCCCTATGCCTAAGC
128 CTC-GCTGCCACAACCCTCGGTCCGACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGC
* * * * * *
33237910 CAACCCACGAAATGGGCGTGCGGGCGCTCAGTCGGCCGGAGAGGCAAAACGCGCAAGCCGGGGAT
192 CAACCCATGAAATGGGCGTGCGGGCGCTCAGCCGGCC-GA-AGGCAGAATGTGCAAGCCGAGGAT
* * * ** ** * *
33237975 CGACCCGATCACCCCTGCGTGCTACCGATCCTACTGCCACAACCCTCAGTCTGGTTCGATCTTAC
255 CGACTCGATCCCCCCTGCATGCTGTCGATCCTACTGCCGTAACCCTCAGTCCGGTTCGATCTTAG
* * *
33238040 ACTGGGAATGAACTCCATATGCTTAGATTGGGTATAAACTCCGTATGCCTAAGTCAATCCATGAA
320 ACTGGGAATGAACTCCGTATGCTTAGACTGGG-ATAAACTCCGTATGCCTAAGTCAATCCACGAA
* * * * * * *
33238105 CCGAGCATGCGGAC-ACTCAGTCGGCCGGAGAGGCCGATTGAAGAGGCATAATTCGTAAGCCGGG
384 CCGAGCATGCGGGCGAC-CAGTCGGTC-GAGAGGTCGATCGGAGAGGCATAATGCGTAAGTC-GG
* * * * * * * *
33238169 GATCAGCCCGGTCCCTCTATATGTGCTGCCGATCCCGCTGCCTGTCCTGCTGCCACAACCCTCGA
446 GACCAGCCCGATCCCCCTCTGTGTGCT-CCGATCCCACTGTC-GTCCTGCTGCCACAACCCTCGG
*
33238234 TCCGATTGGGG
509 TCCGA-TGGGA
* * * *
33238245 CTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGGCTTGCGGTCGCTCAA
1 CTTAGACATGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGA-GCGTGCGGGCGCTCAG
* * *
33238310 CCAG-CTGGAGAGACAGAATGCGCAAGCCAGAATCAGCCCGGTCCCCCTCTGCGTGCTGTCGATC
65 CCGGTC-GGAGAGGCAGAATGCGCAAGCCAGAATCAGCCCGATCCCCCTCTGCGTGCTGTCGA--
* * *
33238374 TCGCTACCGATCCTGTTGCCACAACCCTCGGT-CTAGCTGGGGCTTAGACAT-GAATGAACTCCG
127 T--CT--CG---C---TGCCACAACCCTCGGTCCGA-CTAGGGCTTAGACATGGAATGAACTCCC
* * * * *
33238437 TATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCGCTCAACCGGCCAGAGAGGTAGAATGTGC
181 TATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCGCTCAGCCGGCC-GA-AGGCAGAATGTGC
* * *
33238502 AAGCCGAGGATCGAAT-GATCCCACCTGCATGCTGTCGATCCTGCTGCTGGTCCTGCTGCCGCAA
244 AAGCCGAGGATCGACTCGATCCCCCCTGCATGCTGTCGAT-C--CTACT-G-CC-G-T-----AA
* * * ** *
33238566 CCTTC-GATCCAG-TCAATCTTAGACTGTTAATGAACTCCGTATGCTTAGACATGGAATAAACTC
297 CCCTCAG-TCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC-TGGGATAAACTC
* * * * * ** *
33238629 TGTATGTCTCAGCCAACCCACGAAATGAGCATG-TGG-G--CA--C--TC-A-A--TCGATCGGA
360 CGTATGCCTAAGTCAATCCACGAACCGAGCATGCGGGCGACCAGTCGGTCGAGAGGTCGATCGGA
* * * * * *
33238682 GAAGCAAAATGCGTAAGTCGGAGACC-GACCTAGTCCCCCCCAGTGTGCT---AT--CA---T--
425 GAGGCATAATGCGTAAGTCGG-GACCAGCCCGA-TCCCCCTCTGTGTGCTCCGATCCCACTGTCG
* * * * ***
33238736 TCCTACTACCGCAACCCTCGGTCTGATCCAA
488 TCCTGCTGCCACAACCCTCGGTCCGATGGGA
* *
33238767 TCTTAGAC-TGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTGA
1 -CTTAGACAT-GGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCA
* * * * * *
33238831 GCCGATCGAAGAGGCATAATGCGCAAGCCAGGGATCGGCCCGATCCCCCTCTGTGTGCTGTCGAT
64 GCCGGTCGGAGAGGCAGAATGCGCAAGCCA-GAATCAGCCCGATCCCCCTCTGCGTGCTGTCGAT
* *
33238896 CTCGCTGCCACAACCCTTGGTCCGACT-GGGCTTAGACATGGAATGTACTCCCTATGCCTAAGCC
128 CTCGCTGCCACAACCCTCGGTCCGACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCC
* * **
33238960 AACCCATGAAATGGGCGTACGGTCGCTCAGCCGATCGAAGCGACAGAATGTGCAAGCCGAGGATC
193 AACCCATGAAATGGGCGTGCGGGCGCTCAGCCGGCCGAAG-G-CAGAATGTGCAAGCCGAGGATC
* * * * *
33239025 GGCTCGGTCCCCCCTGCATGTTGTCAATCCTACTG-CGTAACCCTCAGTCCGGTTTGATCTTAGA
256 GACTCGATCCCCCCTGCATGCTGTCGATCCTACTGCCGTAACCCTCAGTCCGGTTCGATCTTAGA
* * *
33239089 CTGGGAATAAACTCCGTATGCTTAGACTGAGGATGAACTCCATATGCCTAAGTCAATCCACGGAA
321 CTGGGAATGAACTCCGTATGCTTAGACTG-GGATAAACTCCGTATGCCTAAGTCAATCCAC-GAA
*
33239154 CCAACGC-TGCGGGCGATCCAGTCGGTCGAAGAGGTCGATCGGAGAGGCATAATGCGTAAGTCGA
384 CCGA-GCATGCGGGCGA-CCAGTCGGTCG-AGAGGTCGATCGGAGAGGCATAATGCGTAAGTCG-
33239218 GGACCAGCCCGATCCCCCTCTGTGTGCTACCGATCCCACTGTCGGTCCTGCTGCCACAACCCTCG
445 GGACCAGCCCGATCCCCCTCTGTGTGCT-CCGATCCCACTGTC-GTCCTGCTGCCACAACCCTCG
33239283 GTCCGACTGGGA
508 GTCCGA-TGGGA
* * * * *
33239295 CTTAGACATGGAATGAACTCCGTATACCTAAGTCGACCCACGAAACGAGCGTACGGGCGCTCAGC
1 CTTAGACATGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * **
33239360 CGGTCGGAGAGGCAGAATGCACAAGCCGAGAATCAGCCCGATCCCCCCCTCCGTGCTACCGATC-
66 CGGTCGGAGAGGCAGAATGCGCAAGCC-AGAATCAGCCCGATCCCCCTCTGCGTGCTGTCGATCT
* *
33239424 CTGCTGTCAGAACCCTCGGTCCG
130 C-GCTGCCACAACCCTCGGTCCG
33239447 GTTCGATCTT
Statistics
Matches: 1335, Mismatches: 269, Indels: 216
0.73 0.15 0.12
Matches are distributed among these distances:
496 7 0.01
497 256 0.19
498 2 0.00
499 13 0.01
500 63 0.05
501 70 0.05
502 4 0.00
503 1 0.00
504 2 0.00
505 2 0.00
506 4 0.00
507 1 0.00
508 2 0.00
509 6 0.00
510 46 0.03
511 99 0.07
512 22 0.02
513 1 0.00
514 4 0.00
515 46 0.03
516 5 0.00
517 2 0.00
519 5 0.00
520 1 0.00
521 3 0.00
522 35 0.03
523 157 0.12
524 17 0.01
525 5 0.00
526 1 0.00
527 174 0.13
528 13 0.01
529 2 0.00
531 3 0.00
534 6 0.00
535 35 0.03
536 1 0.00
537 19 0.01
538 81 0.06
539 29 0.02
540 5 0.00
541 1 0.00
542 3 0.00
544 2 0.00
547 1 0.00
548 66 0.05
549 12 0.01
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (518 bp):
CTTAGACATGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
CGGTCGGAGAGGCAGAATGCGCAAGCCAGAATCAGCCCGATCCCCCTCTGCGTGCTGTCGATCTC
GCTGCCACAACCCTCGGTCCGACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
CCATGAAATGGGCGTGCGGGCGCTCAGCCGGCCGAAGGCAGAATGTGCAAGCCGAGGATCGACTC
GATCCCCCCTGCATGCTGTCGATCCTACTGCCGTAACCCTCAGTCCGGTTCGATCTTAGACTGGG
AATGAACTCCGTATGCTTAGACTGGGATAAACTCCGTATGCCTAAGTCAATCCACGAACCGAGCA
TGCGGGCGACCAGTCGGTCGAGAGGTCGATCGGAGAGGCATAATGCGTAAGTCGGGACCAGCCCG
ATCCCCCTCTGTGTGCTCCGATCCCACTGTCGTCCTGCTGCCACAACCCTCGGTCCGATGGGA
Found at i:33239689 original size:26 final size:26
Alignment explanation
Indices: 33239651--33239703 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33239641 CCAGTCTAAT
*
33239651 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
33239677 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
33239703 C
1 C
33239704 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:33245762 original size:159 final size:159
Alignment explanation
Indices: 33245452--33245820 Score: 440
Period size: 159 Copynumber: 2.3 Consensus size: 159
33245442 GTGACACCGG
* ** * * * *
33245452 GGATCGGCCCGGTCCCCC-CTGCGTGCTATCGATCCTGCTGTCACAACCCTCAGTCCCGTTTGAT
1 GGATCGGCCCGGTCCCCCTCTACGTGCTATCGATCCTGCTACCACAACCCTCGGTCCCGCTGGAG
* * * *
33245516 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACAGGCGCTGAGC
66 CTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCGCTCAGC
* *
33245581 CGATCGGAGAGGCATAATGCGCAAGCCGA
131 CAATCGGAGAGGCAAAATGCGCAAGCCGA
* *
33245610 GGATCGGCCCGGTCCCCCTCTACGTGCTATCGATCCCGCTACCACAACCCTCGGT-CCGACTGGG
1 GGATCGGCCCGGTCCCCCTCTACGTGCTATCGATCCTGCTACCACAACCCTCGGTCCCG-CTGGA
* * * * *
33245674 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTGCGGGTGCTCA
65 GCTTAGAC-TGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCGCTCA
* *
33245738 GCCAATCGGAGAGGTAAAATGCGCAAGCCGG
129 GCCAATCGGAGAGGCAAAATGCGCAAGCCGA
** * * * *
33245769 GGATCGATCCGATCCCTCT-TACATGCTATCGATCCTGCTACCATAACCCTCG
1 GGATCGGCCCGGTCCCCCTCTACGTGCTATCGATCCTGCTACCACAACCCTCG
33245821 ATCCAGTCCA
Statistics
Matches: 179, Mismatches: 29, Indels: 6
0.84 0.14 0.03
Matches are distributed among these distances:
158 51 0.28
159 127 0.71
160 1 0.01
ACGTcount: A:0.22, C:0.33, G:0.25, T:0.20
Consensus pattern (159 bp):
GGATCGGCCCGGTCCCCCTCTACGTGCTATCGATCCTGCTACCACAACCCTCGGTCCCGCTGGAG
CTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCGCTCAGC
CAATCGGAGAGGCAAAATGCGCAAGCCGA
Found at i:33245869 original size:26 final size:26
Alignment explanation
Indices: 33245833--33245884 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
33245823 CCAGTCCAAT
* *
33245833 CTTAGAATGGGAATGAACTTCGTATG
1 CTTAGAATGGGAATAAACTCCGTATG
* *
33245859 CTTAGACTGGGGATAAACTCCGTATG
1 CTTAGAATGGGAATAAACTCCGTATG
33245885 TCTAAGTCAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGAATGGGAATAAACTCCGTATG
Found at i:33246891 original size:159 final size:158
Alignment explanation
Indices: 33246536--33247036 Score: 499
Period size: 158 Copynumber: 3.2 Consensus size: 158
33246526 GGCTCAAAAT
* ** * * *
33246536 CTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCCATAAAATGAGCATGCGGGTGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATACGGGTGCTAAGC
* * * * * * * *
33246601 CGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCTCTGCATGCTGTCGATCCT
66 CGGCCGGAGAGGCAAAATGCGCAAGTCGGGGATCAACCCGGTCCCCTCTACGTGCTGTCGATCCC
* * * *
33246666 ACTACCTCAACCTTCAGTCTGGTTCGAT
131 ACTACCACAACCCTCAGTCTGGCTCGAG
* * * *
33246694 CTTACACTGGGAATGAACTCCGTATGCGTAAGTCAACCCACGAAACGAGCATACGGGTGCTAAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATACGGGTGCTAAGC
* * * *
33246759 CGGCCGAAGAGGCATAATGCGCAAGTCGAGGATCAACCCGGTCCCCCTCTACGTGCTGTCGGTCC
66 CGGCCGGAGAGGCAAAATGCGCAAGTCGGGGATCAACCCGGT-CCCCTCTACGTGCTGTCGATCC
* * * *
33246824 CGCTGCCACAACCCTC-GATCTGGCTGGGG
130 CACTACCACAACCCTCAG-TCTGGCTCGAG
* *
33246853 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGGGCATACGGGCGCTCAA
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATACGGGTGCT-AA
* * ** * **
33246917 -CCAGCCGGAGAGGTAAAATGCGCAAGTCGGGGATCAGTCCGGTCCCCTTTACGTGCTACCGATC
64 GCCGGCCGGAGAGGCAAAATGCGCAAGTCGGGGATCAACCCGGTCCCCTCTACGTGCTGTCGATC
** * ** *
33246981 CTGCTGCTGCAACCCTCAGTCTGG-TCTGAT
129 CCACTACCACAACCCTCAGTCTGGCTC-GAG
* *
33247011 CTTAGA-TTGGAATGAACTCTGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
33247037 TTAGACTGGG
Statistics
Matches: 283, Mismatches: 53, Indels: 15
0.81 0.15 0.04
Matches are distributed among these distances:
156 1 0.00
157 18 0.06
158 134 0.47
159 127 0.45
160 3 0.01
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATACGGGTGCTAAGC
CGGCCGGAGAGGCAAAATGCGCAAGTCGGGGATCAACCCGGTCCCCTCTACGTGCTGTCGATCCC
ACTACCACAACCCTCAGTCTGGCTCGAG
Found at i:33248085 original size:184 final size:184
Alignment explanation
Indices: 33247879--33248566 Score: 506
Period size: 196 Copynumber: 3.6 Consensus size: 184
33247869 GTCGGTTGAG
* * *
33247879 GCTTAGACATTGAATGAACTCTGTATGCCTAAGCCAACCCATGAAATGAGCGTACAGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACAGGCGCTCAA
* *
33247944 CCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGGTCCCCCCTATGTGCTATCGATCC
66 CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCTCGGTCCCCCCTATGTGCTATCGATCC
* * **
33248009 TACTACCGCAACCCTCGATCCTATTCGATCTTAGACTGAGAATGAACTCCATAT
131 TACTGCCGCAACCCTCGATCCAATTCGATCTTAGACTGAGAATGAACTCTGTAT
* * * * * *
33248063 GCTTAGACATGGAATGAACTCTGTATGCCTAATCCAACCCACGAAATGAGAGTACGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACAGGCGCTCAA
** * ** * * * * * ** *
33248128 TTGGCCGGAGAGGCAGAATGCATAAGTCAGGGATTAGCCCGATCCCCCCTGCGTGCTACCGATCT
66 CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCTCGGTCCCCCCTATGTGCTATCGATC-
* * * *
33248193 TGCGGTTGATCCAGTGGCCGCAACCCTTGGTCCGA-TCTGATCTTAGACTAAGAATGAACTCTGT
130 --C---T-A--C--T-GCCGCAACCCTCGATCCAATTC-GATCTTAGACTGAGAATGAACTCTGT
33248257 AT
183 AT
* * ** * ** *
33248259 ACTTAGACATGGAATGAACTCCGTATGCCTAACCCAACCCACGAAAAAAGGGTGGAGGCGGTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACAGGCGCTCAA
* * * * *
33248324 ACGACCGGAGAGGCAGAATGCGCAAGTCGAGGATC-GACTCGTTCCCCCATGCATGTTGTCGATC
66 CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCAG-CTCGGTCCCCC---C-T-ATGT-G---
* * * * * *
33248388 CTGTTGCTGGTCCTACTGTCACAACCCTC-AGT-CAAGTCCGATCTTAGACTGCGAATGAACTCT
121 CT-AT-C-GATCCTACTGCCGCAACCCTCGA-TCCAA-TTCGATCTTAGACTGAGAATGAACTCT
33248451 GTAT
181 GTAT
* * * * *
33248455 GCTTAGA-TTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACT-AGCATACTGGCGCTC
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA-TGAGCGTACAGGCGCTC
** * * * *
33248518 AACCGGTCAGAGAGGTATAATGCGCAAGCCGGGGATCAGCTTGGTCCCC
64 AACCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCTCGGTCCCC
33248567 TTCTGCGTGC
Statistics
Matches: 386, Mismatches: 86, Indels: 52
0.74 0.16 0.10
Matches are distributed among these distances:
184 107 0.28
187 1 0.00
190 1 0.00
191 1 0.00
193 1 0.00
195 7 0.02
196 250 0.65
197 3 0.01
199 2 0.01
200 1 0.00
201 3 0.01
202 2 0.01
205 3 0.01
207 1 0.00
208 3 0.01
ACGTcount: A:0.26, C:0.27, G:0.25, T:0.22
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACAGGCGCTCAA
CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCTCGGTCCCCCCTATGTGCTATCGATCC
TACTGCCGCAACCCTCGATCCAATTCGATCTTAGACTGAGAATGAACTCTGTAT
Found at i:33248263 original size:26 final size:26
Alignment explanation
Indices: 33248234--33248284 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
33248224 CCGATCTGAT
*
33248234 CTTAGAC-TAAGAATGAACTCTGTATA
1 CTTAGACAT-AGAATGAACTCCGTATA
*
33248260 CTTAGACATGGAATGAACTCCGTAT
1 CTTAGACATAGAATGAACTCCGTAT
33248285 GCCTAACCCA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29
Consensus pattern (26 bp):
CTTAGACATAGAATGAACTCCGTATA
Found at i:33248469 original size:26 final size:26
Alignment explanation
Indices: 33248430--33248482 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
33248420 CAAGTCCGAT
*
33248430 CTTAGACTGCGAATGAACTCTGTATG
1 CTTAGACTGCGAATGAACTCCGTATG
* *
33248456 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGCGAATGAACTCCGTATG
33248482 C
1 C
33248483 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGCGAATGAACTCCGTATG
Found at i:33248860 original size:146 final size:146
Alignment explanation
Indices: 33248589--33249335 Score: 566
Period size: 159 Copynumber: 4.9 Consensus size: 146
33248579 TTGATCCTGT
* * * *
33248589 TGCCACAACCCTCGGTCTGGTTGGGGCTTAGACATGGAAGGAACTCCCTATGCCTAAGCCAACCC
1 TGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCAAAGCCAACCC
* * * * * * * *
33248654 ACAAAATGGACGTGCGGGTGCTCAGTCGACCGAAGAGGCAAAATGCGCAAGCCGGTGATCGGTCG
66 ACGAAATGGACGTGCGGGCGCTCAGCCGATCGAAGAGGCATAATGCGCAAGCCGGGGATCGGCCC
*
33248719 GGTCCCCCCTACATGC
131 GGTCCCCCCTGCATGC
* * **
33248735 TGCCACAACCCTCGGTCCGACTGGGGTTTAGACATGGAATGAACTCTGTATGCCAAAGCCAACCC
1 TGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCAAAGCCAACCC
** * * * * * * *
33248800 ACGAAATTCACGTGTGGGCGTTGAGCCGATCGAAGAGGGATAATGCGCAAGTCGAGGATCGACCC
66 ACGAAATGGACGTGCGGGCGCTCAGCCGATCGAAGAGGCATAATGCGCAAGCCGGGGATCGGCCC
*
33248865 GATCCCCCTCTGCTTACTGTC
131 GGTCCCCC-CTGC--A-TG-C
* * * * * *
33248886 GGTCCCGTAGCCATGACCCTCAGTTCGGTTGGGGCTTAGACATGGAATGAACTCTCTATGCCTAA
1 --TGCC--A--CA--ACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCAAA
* * * * * * *
33248951 GCCAACCCACGAAACGGACGTGCGGGCGCTCAGTCGATCGAAAAGGTAGAATGCGTAAGCTGGGG
58 GCCAACCCACGAAATGGACGTGCGGGCGCTCAGCCGATCGAAGAGGCATAATGCGCAAGCCGGGG
* * *
33249016 ATCAGCCCGGTCCCCCATGCGTGC
123 ATCGGCCCGGTCCCCCCTGCATGC
* ** * * *
33249040 TGCCACAACCTTCGGTTTGGCTGGGGTTTAGACAT-GAATGAACTCCGTATGCCAAAGTCAACCC
1 TGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCAAAGCCAACCC
* * * * *
33249104 ATGAAAT-GAGCGTGCGGGTTG-TGAGCTGATCGAAGAGGCATAATGCGTAAGCCGGGGATCGGC
66 ACGAAATGGA-CGTGCGGG-CGCTCAGCCGATCGAAGAGGCATAATGCGCAAGCCGGGGATCGGC
* *
33249167 CCGATCCCCCTCTACGTGCTGTTGGTCCTAC
129 CCGGT-CCCC-C--C-TGC--AT-G-----C
** * *
33249198 TGCCACAACCCTCGGTTTGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCC
1 TGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCAAAGCCAACCC
* * * * * * * * **
33249263 ATGAAAT-GAGTGTGCGGGCGCTCAACAGGTCGAAGAGGCAGAATGTGTAAGCCGAAGATCGGCC
66 ACGAAATGGA-CGTGCGGGCGCTCAGCCGATCGAAGAGGCATAATGCGCAAGCCGGGGATCGGCC
*
33249327 CGGTGCCCC
130 CGGTCCCCC
33249336 ATACGTGCTG
Statistics
Matches: 475, Mismatches: 96, Indels: 49
0.77 0.15 0.08
Matches are distributed among these distances:
144 2 0.00
145 76 0.16
146 140 0.29
147 4 0.01
148 2 0.00
149 1 0.00
150 6 0.01
151 1 0.00
152 4 0.01
153 4 0.01
154 1 0.00
155 3 0.01
157 3 0.01
158 40 0.08
159 188 0.40
ACGTcount: A:0.24, C:0.28, G:0.29, T:0.20
Consensus pattern (146 bp):
TGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCAAAGCCAACCC
ACGAAATGGACGTGCGGGCGCTCAGCCGATCGAAGAGGCATAATGCGCAAGCCGGGGATCGGCCC
GGTCCCCCCTGCATGC
Found at i:33249237 original size:304 final size:303
Alignment explanation
Indices: 33248528--33249347 Score: 966
Period size: 304 Copynumber: 2.7 Consensus size: 303
33248518 AACCGGTCAG
* * ** * * * *
33248528 AGAGGTATAATGCGCAAGCCGGGGATCAGCTTGGTCCCCTTCTGCGTGCTGTTGATCCTGTTGCC
1 AGAGGCATAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTCTGCGTGCTGTTGGTCCT-CTGCC
* * *
33248593 ACAACCCTCGGTCTGGTTGGGGCTTAGACATGGAAGGAACTCCCTATGCCTAAGCCAACCCACAA
65 ACAACCCTCGGTTTGGTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGA
* * * * * * *
33248658 AATGGACGTGCGGGTGCTCAGTCGACCGAAGAGGCAAAATGCGCAAGCCGGTGATCGGTCGGGTC
130 AA-GGACGTGCGGGCGCTCAGTCGATCGAAGAGGCAGAATGCGTAAGCCGGAGATCGGCCCGGTC
* * *
33248723 CCCCCTACATGCTGCCACAACCCTCGGTCCGACTGGGGTTTAGACATGGAATGAACTCTGTATGC
194 CCCCATACGTGCTGCCACAACCCTCGGTCCGACTGGGGTTTAGACATGGAATGAACTCCGTATGC
*
33248788 CAAAGCCAACCCACGAAATTCACGTGTGGGCGTTGAGCCGATCGA
259 CAAAGCCAACCCACGAAATTCACGTGCGGGCGTTGAGCCGATCGA
* * * * * * *
33248833 AGAGGGATAATGCGCAAGTCGAGGATCGACCCGATCCCCCTCTGCTTACTGTCGGTCC-CGTAGC
1 AGAGGCATAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTCTGCGTGCTGTTGGTCCTC-T-GC
** * * *
33248897 CATGACCCTCAGTTCGGTTGGGGCTTAGACATGGAATGAACTCTCTATGCCTAAGCCAACCCACG
64 CACAACCCTCGGTTTGGTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACG
* * * * *
33248962 AAACGGACGTGCGGGCGCTCAGTCGATCGAAAAGGTAGAATGCGTAAGCTGGGGATCAGCCCGGT
129 AAA-GGACGTGCGGGCGCTCAGTCGATCGAAGAGGCAGAATGCGTAAGCCGGAGATCGGCCCGGT
* * ** *
33249027 CCCCCATGCGTGCTGCCACAACCTTCGGTTTGGCTGGGGTTTAGACAT-GAATGAACTCCGTATG
193 CCCCCATACGTGCTGCCACAACCCTCGGTCCGACTGGGGTTTAGACATGGAATGAACTCCGTATG
* * * * *
33249091 CCAAAGTCAACCCATGAAA-TGAGCGTGCGGG-TTGTGAGCTGATCGA
258 CCAAAGCCAACCCACGAAATTCA-CGTGCGGGCGT-TGAGCCGATCGA
* *
33249137 AGAGGCATAATGCGTAAGCCGGGGATCGGCCCGATCCCCCTCTACGTGCTGTTGGTCCTACTGCC
1 AGAGGCATAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTCTGCGTGCTGTTGGTCCT-CTGCC
** *
33249202 ACAACCCTCGGTTTGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGA
65 ACAACCCTCGGTTTGGTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGA
* * * * * *
33249267 AATGAGTGTGCGGGCGCTCA-ACAGGTCGAAGAGGCAGAATGTGTAAGCCGAAGATCGGCCCGGT
130 AAGGA-CGTGCGGGCGCTCAGTC-GATCGAAGAGGCAGAATGCGTAAGCCGGAGATCGGCCCGGT
*
33249331 GCCCCATACGTGCTGCC
193 CCCCCATACGTGCTGCC
33249348 GATCCTATTG
Statistics
Matches: 429, Mismatches: 78, Indels: 17
0.82 0.15 0.03
Matches are distributed among these distances:
303 6 0.01
304 223 0.52
305 199 0.46
306 1 0.00
ACGTcount: A:0.23, C:0.28, G:0.29, T:0.20
Consensus pattern (303 bp):
AGAGGCATAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTCTGCGTGCTGTTGGTCCTCTGCCA
CAACCCTCGGTTTGGTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAA
AGGACGTGCGGGCGCTCAGTCGATCGAAGAGGCAGAATGCGTAAGCCGGAGATCGGCCCGGTCCC
CCATACGTGCTGCCACAACCCTCGGTCCGACTGGGGTTTAGACATGGAATGAACTCCGTATGCCA
AAGCCAACCCACGAAATTCACGTGCGGGCGTTGAGCCGATCGA
Found at i:33250036 original size:11 final size:11
Alignment explanation
Indices: 33250020--33250046 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
33250010 GGCTTTTCGA
33250020 CGATGCTCCGG
1 CGATGCTCCGG
33250031 CGATGCTCCGG
1 CGATGCTCCGG
33250042 CGATG
1 CGATG
33250047 GTGCCCCGGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.11, C:0.33, G:0.37, T:0.19
Consensus pattern (11 bp):
CGATGCTCCGG
Found at i:33250632 original size:157 final size:157
Alignment explanation
Indices: 33250142--33250632 Score: 422
Period size: 158 Copynumber: 3.1 Consensus size: 157
33250132 ACTCTGTACG
*
33250142 CTTAGAC-ATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACAAGTGTGCGGGCACTCAG
1 CTTAGACTA-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAATAAGTGTGCGGGCACTCAG
* * * ** *
33250206 CCGGTCA-GAGAGGCAGAATGCGTAAGCCGGGGATTGACCCGATCCACCCTGCATGCTATCAATC
65 CCGGT-AGGAAAGGCAGAATGCGTAAGCCGGGGATCGACCCGATCC-CCTTGTGTGCTATCGATC
* * *
33250270 CTACT-TCCATAACCCTTGGTCTGGTCTGAT
128 CTACTGT-CACAACCCTCGGTCTGGTATGAT
* * * * * * * * * *
33250300 CTTACACTGGGAATGAAGTCCGTATGCATAAGTCAACCCACGAAATAAGCGTGCGAGCGCTGAGC
1 CTTAGACTAGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATAAGTGTGCGGGCACTCAGC
* * ** * * * * *
33250365 CGG-CGAAAAGGCATG-ATGCACAAGCCGGGGATCGGCCCGATCCCCCTCTGTGTCCTGTAGGTC
66 CGGTAGGAAAGGCA-GAATGCGTAAGCCGGGGATCGACCCGAT-CCCCT-TGTGTGCTATCGATC
** * * **
33250428 CCGCTGCCACAACCCTCGGT-TTG-ACTGGGG
128 CTACTGTCACAACCCTCGGTCTGGTA-T-GAT
* * *
33250458 CTTAGAC-ATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGAGTGTGCGGGCACTCAG
1 CTTAGACTA-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAATAAGTGTGCGGGCACTCAG
* * * * *
33250522 CTGGTAGGATAGGCAGAATGCGTAAGCCAGGGATCGACCTGGTCCCCTTGTGTGCTATCGATCCT
65 CCGGTAGGAAAGGCAGAATGCGTAAGCCGGGGATCGACCCGATCCCCTTGTGTGCTATCGATCCT
* *
33250587 ACTGTCACAACCCTCGATCCGGTATGAT
130 ACTGTCACAACCCTCGGTCTGGTATGAT
*
33250615 CTTAGACTAAGAATGAAC
1 CTTAGACTAGGAATGAAC
33250633 AACGTATGCT
Statistics
Matches: 249, Mismatches: 70, Indels: 29
0.72 0.20 0.08
Matches are distributed among these distances:
157 76 0.31
158 145 0.58
159 28 0.11
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.21
Consensus pattern (157 bp):
CTTAGACTAGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATAAGTGTGCGGGCACTCAGC
CGGTAGGAAAGGCAGAATGCGTAAGCCGGGGATCGACCCGATCCCCTTGTGTGCTATCGATCCTA
CTGTCACAACCCTCGGTCTGGTATGAT
Found at i:33251021 original size:26 final size:26
Alignment explanation
Indices: 33250983--33251035 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33250973 TTGGGTCGAT
33250983 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
33251009 CTTAGACAT-GGAATGAACTTCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
33251035 C
1 C
33251036 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:33251024 original size:184 final size:182
Alignment explanation
Indices: 33250824--33251390 Score: 551
Period size: 196 Copynumber: 3.0 Consensus size: 182
33250814 TCCTACTGGG
* * * * *
33250824 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAACGAGCGTGTGAGCTCTTAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAG
* * *
33250889 TCGGTCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGATCAGTCCCCCCTACGTGCTACCGATCC
66 TCGGTCGGAGAGGCAAAATGCGCAAGCCGGGGATC-GATCAGTCCCCCCTACGTGCTGCCGATCC
33250954 TGCTGCTGCAACCCTCGTTTTGGGTCGATCTTAGACTGGGAATGAACTCCGTAT
130 TGCTGCTGCAACCCTCG-TTTGGGTCGATCTTAGACTGGGAATGAACTCCGTAT
* *
33251008 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGACCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAG
* * * * * * * *
33251073 CCAGCCGGTGAGGCAAAATGCACAAGCCGGGGATCGACTCGGTCCCCCCTCCGTGCTGCTGATCC
66 TCGGTCGGAGAGGCAAAATGCGCAAGCCGGGGATCGA-TCAGTCCCCCCTACGTGCTGCCGATCC
*** *
33251138 TGTTACTGGTCCTGCTACCGTAACCCTCAG-TCCAGTCTGATCTTAGACTGGGAATGAACTCTGT
130 TG---CT-G--CTG----C--AACCCTC-GTTTGGGTC-GATCTTAGACTGGGAATGAACTCCGT
33251202 AT
181 AT
* * * * * *
33251204 GCTTAGACATGGAATGAACTCCGCATGCCTAAGCCAGCCTACGAAATGAGCATGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAG
* * * * * * * * * *
33251269 TCGGTCGGAAAGGCATAATGCGTAAGCCAGGGATTGACCTTGTCCCCCCCTACATGCTGTCAATC
66 TCGGTCGGAGAGGCAAAATGCGCAAGCCGGGGATCGATC-AGT-CCCCCCTACGTGCTGCCGATC
* * * * **
33251334 CTGCTACCGTAACCCTCGATCTGGCCCGATCTTAGACTGGGAATGAACTCCGTAT
129 CTGCTGCTGCAACCCTCG-TTTGGGTCGATCTTAGACTGGGAATGAACTCCGTAT
33251389 GC
1 GC
33251391 CTAAGTTAAC
Statistics
Matches: 307, Mismatches: 57, Indels: 37
0.77 0.14 0.09
Matches are distributed among these distances:
183 2 0.01
184 112 0.36
185 36 0.12
186 1 0.00
187 2 0.01
188 1 0.00
190 3 0.01
191 2 0.01
194 3 0.01
195 5 0.02
196 120 0.39
197 20 0.07
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.22
Consensus pattern (182 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAG
TCGGTCGGAGAGGCAAAATGCGCAAGCCGGGGATCGATCAGTCCCCCCTACGTGCTGCCGATCCT
GCTGCTGCAACCCTCGTTTGGGTCGATCTTAGACTGGGAATGAACTCCGTAT
Found at i:33251231 original size:26 final size:26
Alignment explanation
Indices: 33251179--33251231 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
33251169 CCAGTCTGAT
* *
33251179 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
33251205 CTTAGACAT-GGAATGAACTCCGCATG
1 CTTAGAC-TGGGAATGAACTCCGCATG
33251231 C
1 C
33251232 CTAAGCCAGC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:33251507 original size:159 final size:150
Alignment explanation
Indices: 33251344--33251699 Score: 340
Period size: 150 Copynumber: 2.3 Consensus size: 150
33251334 CTGCTACCGT
* **
33251344 AACCCTCGATCTGGCCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTTAACCCATGAAA
1 AACCCTCGATCTGGCCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCA--AAA
* * * * * *
33251409 CGAGCATGTGGGTGCTGAGCCGATCGGAGAGGCATAATGTGTAAGTCGAGGATCGACCCAAT-CC
64 --A--ATG-GGGTGCTCAGCCGATCGAAGAGGCAGAATGCGCAAGCCGAGGATCGACCCAATCCC
* *
33251473 CCTTCAGTGTGCTGCCGGTCCCGCTGCCAC
124 CCTGCA---TGCTGCCGATCCCGCTGCCAC
* * ** ** * *
33251503 AACCCTC-AGCCTGACTGGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACAA
1 AACCCTCGA-TCTGGCCCGATCTTAGAC-TGGGAATGAACTCCATATGCCTAAGCCAACCCAAAA
**
33251566 AATGGGGTGCTCAGCCGATCGAAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCCCCTGC
64 AATGGGGTGCTCAGCCGATCGAAGAGGCAGAATGCGCAAGCCGAGGATCGACCCAATCCCCCTGC
* * **
33251631 ATGCTGTCGATCCTGCTGCCGT
129 ATGCTGCCGATCCCGCTGCCAC
* *
33251653 AACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCATATGC
1 AACCCTCGATCTGGCCCGATCTTAGACTGGGAATGAACTCCATATGC
33251700 TTAGACTAGG
Statistics
Matches: 160, Mismatches: 32, Indels: 19
0.76 0.15 0.09
Matches are distributed among these distances:
149 1 0.01
150 51 0.32
151 1 0.01
152 45 0.28
153 10 0.06
155 1 0.01
157 2 0.01
158 1 0.01
159 47 0.29
160 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (150 bp):
AACCCTCGATCTGGCCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCAAAAAA
TGGGGTGCTCAGCCGATCGAAGAGGCAGAATGCGCAAGCCGAGGATCGACCCAATCCCCCTGCAT
GCTGCCGATCCCGCTGCCAC
Found at i:33251699 original size:150 final size:154
Alignment explanation
Indices: 33251314--33251699 Score: 383
Period size: 159 Copynumber: 2.5 Consensus size: 154
33251304 GACCTTGTCC
* * * *
33251314 CCCCCTACATGCTGTCAATCCTGCTACCGTAACCCTCGATCTGGCCCGATCTTAGACTGGGAATG
1 CCCCCTACATGCTGTCGATCCTGCTGCCGTAACCCTCGATCTGGACTGATCTTAGACTGGGAATG
* ** * * *
33251379 AACTCCGTATGCCTAAGTTAACCCATGAAACGAGCATGTGGGTGCTGAGCCGATCGGAGAGGCAT
66 AACTCCATATGCCTAAGCCAACCCA-GAAAC-A-CATGTGGGTGCTCAGCCGATCGAAGAGGCAG
* * *
33251444 AATGTGTAAGTCGAGGATCGACCCAAT
128 AATGCGCAAGCCGAGGATCGACCCAAT
* * * * ** * **
33251471 -CCCCTTCAGTGTGCTGCCGGTCCCGCTGCCACAACCCTC-AGCCT-GACTGGGGCTTAGACAT-
1 CCCCCTACA---TGCTGTCGATCCTGCTGCCGTAACCCTCGA-TCTGGACT-GATCTTAGAC-TG
* *
33251532 GGAATGAACTCCCTATGCCTAAGCCAACCCA-CAA-A-ATG-GGGTGCTCAGCCGATCGAAGAGG
60 GGAATGAACTCCATATGCCTAAGCCAACCCAGAAACACATGTGGGTGCTCAGCCGATCGAAGAGG
**
33251593 CAGAATGCGCAAGCCGAGGATCGACCCGGT
125 CAGAATGCGCAAGCCGAGGATCGACCCAAT
* *
33251623 CCCCCTGCATGCTGTCGATCCTGCTGCCGTAACCCTCGATCTGGTCTGATCTTAGACTGGGAATG
1 CCCCCTACATGCTGTCGATCCTGCTGCCGTAACCCTCGATCTGGACTGATCTTAGACTGGGAATG
33251688 AACTCCATATGC
66 AACTCCATATGC
33251700 TTAGACTAGG
Statistics
Matches: 183, Mismatches: 36, Indels: 27
0.74 0.15 0.11
Matches are distributed among these distances:
149 1 0.01
150 50 0.27
151 4 0.02
152 45 0.25
153 10 0.05
155 1 0.01
156 7 0.04
157 2 0.01
158 3 0.02
159 59 0.32
160 1 0.01
ACGTcount: A:0.23, C:0.31, G:0.25, T:0.21
Consensus pattern (154 bp):
CCCCCTACATGCTGTCGATCCTGCTGCCGTAACCCTCGATCTGGACTGATCTTAGACTGGGAATG
AACTCCATATGCCTAAGCCAACCCAGAAACACATGTGGGTGCTCAGCCGATCGAAGAGGCAGAAT
GCGCAAGCCGAGGATCGACCCAAT
Found at i:33251714 original size:26 final size:26
Alignment explanation
Indices: 33251673--33251725 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
33251663 CTGGTCTGAT
33251673 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
33251699 CTTAGACTAGGG-ATGAACTCCATATG
1 CTTAGACT-GGGAATGAACTCCATATG
33251725 C
1 C
33251726 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:33252615 original size:26 final size:26
Alignment explanation
Indices: 33252586--33252638 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33252576 CCGGTCTGAT
*
33252586 CTTAGACT-GGGAATGAACTCTGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
33252612 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
33252638 C
1 C
33252639 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:33253005 original size:26 final size:26
Alignment explanation
Indices: 33252954--33253006 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
33252944 TCGATCCAAT
*
33252954 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
33252980 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
33253006 C
1 C
33253007 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:33253111 original size:184 final size:183
Alignment explanation
Indices: 33252811--33253422 Score: 636
Period size: 184 Copynumber: 3.3 Consensus size: 183
33252801 ACATGGAATT
* * ** * * *
33252811 AACTCTGTATGCCTAAGCCAACCCATGAAACGATAGTGTGGGCACTCAACCGGTTGGAGAGGCAG
1 AACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGTCGGAGAGGCAG
* * * * *
33252876 AATGCGTAAGCTGGGGATCGGCCCGATCCCCCTTGCGTGTTGTCAATCCTGCTGCCACAACCCTC
66 AATGCGTAAGCTGGGGATCGGCCCGATCCCCCCTG-GAGCTGTCGATCCTGCTGCCGCAACCCTC
* * * *
33252941 GATTCGATCCAATCTTAGACTGGGAATGAACTTCATATGCTTAGACTGGGGATG
130 GATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATG
* * * * *
33252995 AACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGTGGGCGCTCAGCCGGCCGAAGAGGCAG
1 AACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGTCGGAGAGGCAG
* ***
33253060 AATGCGTACGCCAAGGATCGGCCCGATCCCCCCTGTGAGCTGTCGATCCTGCTGCTGGTCCTGCT
66 AATGCGTAAGCTGGGGATCGGCCCGATCCCCCCTG-GAGCTGTCGA---T-C--CT-G--CTGC-
*
33253125 GTCGCAACCCTCGGA-CCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAT-GGA
120 --CGCAACCCTC-GATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC-TGGGG
33253188 ATG
181 ATG
* *
33253191 AACTCCGTATGCCTAAGCCAACCCACGAAACGAGCTTGCGGGTGCTCAACCGGTCGGAGAGGCAG
1 AACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGTCGGAGAGGCAG
* * * * ** **
33253256 AATGCGTAAGCTGGGGATCGACCTGGTCCCCCCCTGCATGCTACCGATCCTGCTGTTGCAACCCT
66 AATGCGTAAGCTGGGGATCGGCCCGAT-CCCCCCTGGA-GCTGTCGATCCTGCTGCCGCAACCCT
* * *
33253321 CGGTCCGATCCGATCTTAAACT-GGAATGAACTCCGTATGCTTAGACTGGGGATA
129 CGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATG
* * ** * *
33253375 AACTCTGTATGCCTAAGTCAATGCATGAAACGAGCGTACGGGCGCTCA
1 AACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
33253423 GTCGACCGGA
Statistics
Matches: 354, Mismatches: 56, Indels: 36
0.79 0.13 0.08
Matches are distributed among these distances:
183 1 0.00
184 161 0.45
185 26 0.07
187 1 0.00
188 4 0.01
190 3 0.01
191 3 0.01
193 5 0.01
194 1 0.00
196 132 0.37
197 17 0.05
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.21
Consensus pattern (183 bp):
AACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGTCGGAGAGGCAG
AATGCGTAAGCTGGGGATCGGCCCGATCCCCCCTGGAGCTGTCGATCCTGCTGCCGCAACCCTCG
ATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATG
Found at i:33253179 original size:26 final size:26
Alignment explanation
Indices: 33253150--33253202 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
33253140 CCGATCCGAT
33253150 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
33253176 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
33253202 C
1 C
33253203 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:33253256 original size:196 final size:185
Alignment explanation
Indices: 33252811--33253422 Score: 602
Period size: 196 Copynumber: 3.3 Consensus size: 185
33252801 ACATGGAATT
* * ** * * ** *
33252811 AACTCTGTATGCCTAAGCCAACCCATGAAACGATAGTGTGGGCACTCAACCGGTTGGAGAGGCAG
1 AACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCGAAGAGGCAG
*** * * * * ** * * *
33252876 AATGCGTAAGCTGGGGATCGGCCCGAT-CCCCCTTGCGTGTTGTCAATCCTGCTGCCACAACCCT
66 AATGCGTAAGCCAAGGATCGACCCGATCCCCCCCTGCATGCTACCGATCCTGCTGTCGCAACCCT
* * * *
33252940 C-GATTCGATCCAATCTTAGACTGGGAATGAACTTCATATGCTTAGACTGGGGATG
131 CGGA-CCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATG
* * *
33252995 AACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGTGGGCGCTCAGCCGGCCGAAGAGGCAG
1 AACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCGAAGAGGCAG
* * * * *
33253060 AATGCGTACGCCAAGGATCGGCCCGATCCCCCCTGTGAGCTGTCGATCCTGCTGCTGGTCCTGCT
66 AATGCGTAAGCCAAGGATCGACCCGATCCCCCC------CTG-C-A---TGCTACCGATCCTGCT
*
33253125 GTCGCAACCCTCGGACCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAT-GGAA
120 GTCGCAACCCTCGGACCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC-TGGGGA
33253189 TG
184 TG
* * * *
33253191 AACTCCGTATGCCTAAGCCAACCCACGAAACGAGCTTGCGGGTGCTCAACCGGTCGGAGAGGCAG
1 AACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCGAAGAGGCAG
*** * * *
33253256 AATGCGTAAGCTGGGGATCGACCTGGTCCCCCCCTGCATGCTACCGATCCTGCTGTTGCAACCCT
66 AATGCGTAAGCCAAGGATCGACCCGATCCCCCCCTGCATGCTACCGATCCTGCTGTCGCAACCCT
* * *
33253321 CGGTCCGATCCGATCTTAAACT-GGAATGAACTCCGTATGCTTAGACTGGGGATA
131 CGGACCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATG
* * ** * *
33253375 AACTCTGTATGCCTAAGTCAATGCATGAAACGAGCGTACGGGCGCTCA
1 AACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
33253423 GTCGACCGGA
Statistics
Matches: 355, Mismatches: 58, Indels: 30
0.80 0.13 0.07
Matches are distributed among these distances:
183 1 0.00
184 146 0.41
185 48 0.14
188 1 0.00
189 1 0.00
190 3 0.01
191 2 0.01
192 1 0.00
196 149 0.42
197 3 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.21
Consensus pattern (185 bp):
AACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCGAAGAGGCAG
AATGCGTAAGCCAAGGATCGACCCGATCCCCCCCTGCATGCTACCGATCCTGCTGTCGCAACCCT
CGGACCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATG
Found at i:33253890 original size:26 final size:26
Alignment explanation
Indices: 33253861--33253913 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33253851 CCGGTCCGAT
33253861 CTTAGACT-GCGAATGAACTCCGTATG
1 CTTAGACTAG-GAATGAACTCCGTATG
*
33253887 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
33253913 C
1 C
33253914 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:33254168 original size:527 final size:526
Alignment explanation
Indices: 33253175--33254189 Score: 1209
Period size: 527 Copynumber: 1.9 Consensus size: 526
33253165 AACTCCGTAT
* * * * **
33253175 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCTTGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAACCAAACCACGAAACGAGCATGCGGGCACTCAA
* * * ** *
33253240 CCGGTCGGAGAGGCAGAATGCGTAAGCTGGGGATCGACCTGGTCCCCCCCTGCATGCTACCGATC
66 CCGGCCAGAGAGGCAGAATGCATAAGCTGGGGATCGACCCAGTCCCCCCCTGCATGCTACCAATC
* *** * *
33253305 CTGCTGTTGCAACCCTCGGTCCGATCCGATCTTAAACTGGAATGAACTCCGTATGCTTAGACTGG
131 CTACTACCGCAACCCTCAGTCCGATCCGATCTTAAACTGGAATGAACTCCGTATGCTTAGACTAG
* * ** * * *
33253370 GGATAAACTCTGTATGCCTAAGTCAATGCATGAAACGAGCGTACGGGCGCTCAGTCGACCGGAAA
196 GAATAAACTCTGTATGCCTAAGTCAATCCACAAAACGAGCGTACGGGCACTCAGCCGACCAGAAA
** *
33253435 GGCCGATCGAAAAGGCATAATATGCAACACAGGGATCAGCCCAGTCCCCCTCTACGTGCAACCGA
261 GGCCGATCGAAAAGGCATAATACACAACACAAGGATCAGCCCAGTCCCCCTCTACGTGCAACCGA
* * * * *
33253500 TCCCGCTGCCGGTCCTGCTAGCACAACCCTTGGTCTGACTGGGGCTTAGACATGGAATAAACTCT
326 TCCCGCTGCCAGTCCTGCTAGCACAAACCTTAGTCCGACTGGGGCTTAGACATGGAATAAACTCC
* * * * *
33253565 GTATGCCTAAGCCAACCTACAAAACGAGCGTGCGGGTGCTGAGCCGACCGGAGAGGCATAATACG
391 GTATGCCTAAGCCAACCCACAAAACGAGCGTGCAGGTGCTCAGCCGACCGGAGAGGCAGAATACA
33253630 CAAGCCAGGGATCGG-CCTGATCCCCCTCTGCGTGCTATCGGTCCCGCTGCCACAACCCTCGATC
456 CAAGCCAGGGATCGGTCC-GAT-CCCCTCTGCGTGCTATCGGTCCCGCTGCCACAACCCTCGATC
33253694 CGACTGGG
519 CGACTGGG
* * * *
33253702 GCTTAGACATGGAATGAACTCCCTATGCCTAAACCAAAGCACGAAATGGGCATGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAACCAAACCACGAAACGAGCATGCGGGCACTCAA
* * * * *
33253767 TCGGCCAGAGAGGGAGAATGCATAAG-TCGGGGATCGGCCCAGT-CCCCCCTGCGTGCTGCCAAT
66 CCGGCCAGAGAGGCAGAATGCATAAGCT-GGGGATCGACCCAGTCCCCCCCTGCATGCTACCAAT
* * *
33253830 CCTACTACCGCAAGCCTCAGTCCGGTCCGATCTTAGACTGCGAATGAACTCCGTATGCTTAGACT
130 CCTACTACCGCAACCCTCAGTCCGATCCGATCTTAAACTG-GAATGAACTCCGTATGCTTAGACT
*
33253895 AGGAATGAACTCTGTATGCCTAAGTCAA-CCAACAAAACGAGCGTACGGGCACTCAGCCGACCAG
194 AGGAATAAACTCTGTATGCCTAAGTCAATCC-ACAAAACGAGCGTACGGGCACTCAGCCGACCAG
* * * * * * **
33253959 AAAGGCTGATCGAAGAGGCATAATGCACAAGC-CAAGGATCAGCCCGGTCCCCTTCTGCGTGTTA
258 AAAGGCCGATCGAAAAGGCATAATACACAA-CACAAGGATCAGCCCAGTCCCCCTCTACGTGCAA
** * * ** * *
33254023 CCGATCTTGCTGTCAGTCCTG-TTGC-CATAACCTTCAGTCCGGTTGGGGTTTAGACATGGAATG
322 CCGATCCCGCTGCCAGTCCTGCTAGCACA-AACCTT-AGTCCGACTGGGGCTTAGACATGGAATA
** ** * * * *
33254086 AACTCCGTATGCCTAAGCCAACCCATGAAATTAGCGTGTAGGTGTTCAGCC-AGTCGGAGAGGTA
385 AACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCAGGTGCTCAGCCGA-CCGGAGAGGCA
*
33254150 GAATGCACAAGCCAGGGATCGGTCCGATCCCCTCTGCGTG
449 GAATACACAAGCCAGGGATCGGTCCGATCCCCTCTGCGTG
33254190 TTACCGATCC
Statistics
Matches: 404, Mismatches: 76, Indels: 17
0.81 0.15 0.03
Matches are distributed among these distances:
525 2 0.00
526 72 0.18
527 327 0.81
528 3 0.01
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (526 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAACCAAACCACGAAACGAGCATGCGGGCACTCAA
CCGGCCAGAGAGGCAGAATGCATAAGCTGGGGATCGACCCAGTCCCCCCCTGCATGCTACCAATC
CTACTACCGCAACCCTCAGTCCGATCCGATCTTAAACTGGAATGAACTCCGTATGCTTAGACTAG
GAATAAACTCTGTATGCCTAAGTCAATCCACAAAACGAGCGTACGGGCACTCAGCCGACCAGAAA
GGCCGATCGAAAAGGCATAATACACAACACAAGGATCAGCCCAGTCCCCCTCTACGTGCAACCGA
TCCCGCTGCCAGTCCTGCTAGCACAAACCTTAGTCCGACTGGGGCTTAGACATGGAATAAACTCC
GTATGCCTAAGCCAACCCACAAAACGAGCGTGCAGGTGCTCAGCCGACCGGAGAGGCAGAATACA
CAAGCCAGGGATCGGTCCGATCCCCTCTGCGTGCTATCGGTCCCGCTGCCACAACCCTCGATCCG
ACTGGG
Found at i:33254953 original size:26 final size:26
Alignment explanation
Indices: 33254902--33254954 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
33254892 CAAAAAAAAT
*
33254902 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
33254928 CTTAGACAT-GGAATGAACTCTATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
33254954 C
1 C
33254955 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:33255115 original size:26 final size:26
Alignment explanation
Indices: 33255086--33255138 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
33255076 CCGGTCCAAT
* *
33255086 CTTAGCCTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
33255112 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
33255138 C
1 C
33255139 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:33255826 original size:26 final size:26
Alignment explanation
Indices: 33255788--33255838 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
33255778 GGCTCAAAAT
33255788 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
33255814 CTTAGACAT-GGAATGAACTCCGTAT
1 CTTAGAC-TGGGAATGAACTCCGTAT
33255839 ACCTAAGCTA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:33257604 original size:26 final size:26
Alignment explanation
Indices: 33257575--33257627 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
33257565 CTGGTCCGAT
33257575 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
33257601 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
33257627 C
1 C
33257628 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:33257698 original size:184 final size:183
Alignment explanation
Indices: 33257418--33257784 Score: 493
Period size: 184 Copynumber: 2.0 Consensus size: 183
33257408 CGGCTGGGGT
* * * ** *
33257418 TTAGACACGGAATAAACTCTGTATGCCTAAGCCAACCCACGAAATGAGTGTGCGGGCGTTCAGCC
1 TTAGACACGGAATAAACTCCGTATGCCTAAGCCAACCCACCAAACGAGCATGCGGGCGTTCAACC
* * * * *
33257483 AGCCGGAGAGGCAGAATGCACAGGTCGGGGATTGGCTCGATTCCCCCTACGTGTTGCCAATCTTG
66 AGCCGGAGAGGCAGAATGCACAAGCCGGGGATTAGCTCGA-TCCCCCTACGTGCTGCCAATCTTA
* **
33257548 CTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
130 CTGCCGCAACCCTCAGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
* * *
33257602 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACCAAACGAGCATGTGGGCGTTCAACC
1 TTAGACACGGAATAAACTCCGTATGCCTAAGCCAACCCACCAAACGAGCATGCGGGCGTTCAACC
* ** * * * *
33257667 -GATCGGAGAGGCAGAATGCGTAAGCCGGGGATTAGCTCGATGCCCCTGCGTGCTGTCGATCTTA
66 AG-CCGGAGAGGCAGAATGCACAAGCCGGGGATTAGCTCGATCCCCCTACGTGCTGCCAATCTTA
33257731 CTGCCGCAACCCTCAGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
130 CTGCCGCAACCCTCAGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
33257785 AAAAGTTGAC
Statistics
Matches: 158, Mismatches: 24, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
183 70 0.44
184 88 0.56
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (183 bp):
TTAGACACGGAATAAACTCCGTATGCCTAAGCCAACCCACCAAACGAGCATGCGGGCGTTCAACC
AGCCGGAGAGGCAGAATGCACAAGCCGGGGATTAGCTCGATCCCCCTACGTGCTGCCAATCTTAC
TGCCGCAACCCTCAGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
Found at i:33258201 original size:316 final size:316
Alignment explanation
Indices: 33257600--33258202 Score: 669
Period size: 316 Copynumber: 1.9 Consensus size: 316
33257590 AACTCCGTAT
* * * *
33257600 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACCAAACGAGCATGTGGGCGTTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAACCACCAAACGAGCATGCGGGCGCTCAA
* * * * * * * * * * *
33257665 CCGATCGGAGAGGCAGAATGCGTAAGCCGGGGATTAGCTCGATGCCCCTGCGTGCTGTCGATCTT
66 CCGACCAGAGAGGCAGAATGCGCAAGCCAGGAATGACCTCGATCCCCCTGCGTGCTGCCAATCGT
**
33257730 ACTGCCGCAACCCTCAGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCAAAAGTTGAC
131 ACTGCCGCAACCCTCAGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCAAAAGTCAAC
* * * ** * **
33257795 CCACAAAACGAGCGTACGATCACTGAGTCGACTGAAGAGGCAAAATGCGCAAGCCGGGGATTGGC
196 CCACAAAACGAGCATACGAGCACTCAACCGACTGAAGAGGCAAAATACGCAAGCCGGGGATCAGC
* **
33257860 CCGACCCCCTTTTGTGTGCTACCGATCCCGTTGCCACAACCCTCGGTCCGGTTGGG
261 CCGACCCCCTTCTACGTGCTACCGATCCCGTTGCCACAACCCTCGGTCCGGTTGGG
* * ** * *
33257916 GCTTGGACATGGAATGAACTCCCTATGCCTAAGCCAAATCATGAAACGGGCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAACCACCAAACGAGCATGCGGGCGCTCAA
* * *
33257981 CCGGCCAGAGAGGTAGAATGCGCAAGCCAGGAATCGACCT-GATCCCCCCTGCGTGTTGCCAATC
66 CCGACCAGAGAGGCAGAATGCGCAAGCCAGGAAT-GACCTCGAT-CCCCCTGCGTGCTGCCAATC
* * *
33258045 GTACTGCCGCAACCCTCGGTCCAGTCCTATCTTAGACTGGGAATGAACTCCGTATGCTTAAA-TC
129 GTACTGCCGCAACCCTCAGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGC-AAAAGTC
* * * * ** * *
33258109 AACCCACGAAATGAGCATGC-AGGCGCTCAACCGA-TCG-AGAGGCGTAATACGTAAGTCGGGGA
193 AACCCACAAAACGAGCATACGA-GCACTCAACCGACT-GAAGAGGCAAAATACGCAAGCCGGGGA
*
33258171 TCAGCCCGATCCCGC-TCTACGTGCTACCGATC
256 TCAGCCCGA-CCCCCTTCTACGTGCTACCGATC
33258203 TTGCTGTCGG
Statistics
Matches: 232, Mismatches: 49, Indels: 12
0.79 0.17 0.04
Matches are distributed among these distances:
316 128 0.55
317 101 0.44
318 3 0.01
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (316 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAACCACCAAACGAGCATGCGGGCGCTCAA
CCGACCAGAGAGGCAGAATGCGCAAGCCAGGAATGACCTCGATCCCCCTGCGTGCTGCCAATCGT
ACTGCCGCAACCCTCAGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCAAAAGTCAAC
CCACAAAACGAGCATACGAGCACTCAACCGACTGAAGAGGCAAAATACGCAAGCCGGGGATCAGC
CCGACCCCCTTCTACGTGCTACCGATCCCGTTGCCACAACCCTCGGTCCGGTTGGG
Found at i:33258456 original size:26 final size:26
Alignment explanation
Indices: 33258418--33258470 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33258408 TCGGTTCGAT
33258418 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
33258444 CTTAGAC-ATGGAATGAACTCGGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
33258470 C
1 C
33258471 CTAAGCCAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:33259118 original size:26 final size:26
Alignment explanation
Indices: 33259089--33259141 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33259079 CCGATCCAAT
*
33259089 CTTAGATT-GGGAATGAACTCCGTATG
1 CTTAGATTAGGG-ATGAACTCCATATG
33259115 CTTAGATTAGGGATGAACTCCATATG
1 CTTAGATTAGGGATGAACTCCATATG
33259141 C
1 C
33259142 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGATTAGGGATGAACTCCATATG
Found at i:33259873 original size:26 final size:26
Alignment explanation
Indices: 33259822--33259874 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
33259812 GGCTCAAAAT
**
33259822 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
33259848 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
33259874 C
1 C
33259875 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:33260766 original size:159 final size:158
Alignment explanation
Indices: 33260432--33260735 Score: 393
Period size: 159 Copynumber: 1.9 Consensus size: 158
33260422 GGTCCTGCTG
* * * * *
33260432 CCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAT
1 CCACAACCCTCGGTCTGGCTAGGGCTTACACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
* * * *
33260497 GAAACGAGCGTGCGGGTGCTCAGTCGGCCAGAGAGGCATAATGCGTAAGCCGGGGATCGACCCAG
66 GAAACGAGCG-GCGGGTGCTCAGCCAGCCAGAGAGGCAGAATGCGTAAGCCGAGGATCGACCCAG
* * *
33260562 TCCATCTCTGCATGCTGTCGGATGCGCTG
130 TCCATCCCTACATGCTGTCGGATGCGCTA
* *
33260591 CCACAACCCTCGGTCTGGCTAGGGTTTACACATGGAATGAACTCCCTATGCCTAAGCCAACCGAC
1 CCACAACCCTCGGTCTGGCTAGGGCTTACACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
* * *
33260656 GAAACG-GAC-GC-GGTGCTCAGCCAGCCAGAGAGGCAGAATGTGTAAGCCGAGGATTGGCCC-G
66 GAAACGAG-CGGCGGGTGCTCAGCCAGCCAGAGAGGCAGAATGCGTAAGCCGAGGATCGACCCAG
*
33260717 TCC-TCCCTACGTGCTGTCG
130 TCCATCCCTACATGCTGTCG
33260736 ATCTTGCTAT
Statistics
Matches: 127, Mismatches: 17, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
154 13 0.10
155 4 0.03
156 42 0.33
157 2 0.02
158 1 0.01
159 65 0.51
ACGTcount: A:0.23, C:0.30, G:0.29, T:0.18
Consensus pattern (158 bp):
CCACAACCCTCGGTCTGGCTAGGGCTTACACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
GAAACGAGCGGCGGGTGCTCAGCCAGCCAGAGAGGCAGAATGCGTAAGCCGAGGATCGACCCAGT
CCATCCCTACATGCTGTCGGATGCGCTA
Found at i:33261509 original size:26 final size:26
Alignment explanation
Indices: 33261480--33261532 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33261470 GGCTCAAAAT
33261480 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGA-TAGGGAATGAACTCCGTATG
*
33261506 CTTAGATATGGAATGAACTCCGTATG
1 CTTAGATAGGGAATGAACTCCGTATG
33261532 C
1 C
33261533 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGATAGGGAATGAACTCCGTATG
Found at i:33262205 original size:26 final size:26
Alignment explanation
Indices: 33262176--33262228 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
33262166 CCGATCCGAT
33262176 CTTAGACAGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
*
33262202 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
33262228 C
1 C
33262229 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Found at i:33263542 original size:26 final size:26
Alignment explanation
Indices: 33263504--33263556 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
33263494 GGCTCAAAAT
33263504 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCTGTATG
33263530 CTTAGAC-ATGGAATGAACTCTGTATG
1 CTTAGACTA-GGAATGAACTCTGTATG
33263556 C
1 C
33263557 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCTGTATG
Found at i:33263872 original size:158 final size:159
Alignment explanation
Indices: 33263527--33264024 Score: 393
Period size: 158 Copynumber: 3.2 Consensus size: 159
33263517 TGAACTCTGT
* * *
33263527 ATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACAAAATGAGTGTGCGGACGCTC
1 ATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAATGAATGTGCGGACGCTC
* * * * *
33263592 AGCCGATTAGAGAGGCAGAATGCGCAAGTTGGGGATTGGCCCGATCCCCCCTACGTACTGTCGAT
66 AGCCGATCAGAGAGGCAGAATACGCAAGCTGGGGATCGACCCGATCCCCCCTACGTACTGTCGAT
* *
33263657 CCTGCTGCCACAACCCTCGATCCGGTCTG
131 CCTGCTACCACAACCCTCGATCCGGACTG
* * * * * * *
33263686 AT-CTTAGACAGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAATGAATGTGCGGGCGTTG
1 ATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAATGAATGTGCGGACGCTC
* * * * ** * * *
33263750 AGTCGATCGGAGAGGCATAATATGCAAGCTGGGGATCGACCCGATCACCCTTTTCGTGCTGTCGG
66 AGCCGATCAGAGAGGCAGAATACGCAAGCTGGGGATCGACCCGATC-CCCCCTACGTACTGTCGA
*
33263815 T-CTGGCTACCACAACCGTC-AGTCC-GACTG
130 TCCT-GCTACCACAACCCTCGA-TCCGGACTG
* * * *** * * *
33263844 -TGGCTTAGACATGGAATGAAC-CCCTATGCCTAAGCCAACCCATAGAACGGGCGTACGGGCACT
1 AT-GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAATGAATGTGCGGACGCT
** ** * * * * * **
33263907 CAGCCGGCCAGCA-AGGCAGAATGTGTAAGCCGAGGATCGGCCCGATCCCCCCTACGTGCTACCG
65 CAGCCGATCAG-AGAGGCAGAATACGCAAGCTGGGGATCGACCCGATCCCCCCTACGTACTGTCG
** * * * *
33263971 ATCCTGCTGTCGCAACCCTCGGTCTGGTCTG
129 ATCCTGCTACCACAACCCTCGATCCGGACTG
*
33264002 AT-CTTAAAC-TGGGAATGAACTCC
1 ATGCTTAGACAT-GGAATGAACTCC
33264025 ATTTGCTTAG
Statistics
Matches: 262, Mismatches: 65, Indels: 25
0.74 0.18 0.07
Matches are distributed among these distances:
156 1 0.00
157 42 0.16
158 168 0.64
159 51 0.19
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (159 bp):
ATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAATGAATGTGCGGACGCTC
AGCCGATCAGAGAGGCAGAATACGCAAGCTGGGGATCGACCCGATCCCCCCTACGTACTGTCGAT
CCTGCTACCACAACCCTCGATCCGGACTG
Done.