Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 364 of 402
Found at i:33264969 original size:26 final size:26
Alignment explanation
Indices: 33264931--33264983 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33264921 TCGATCTGAT
33264931 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
33264957 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
33264983 C
1 C
33264984 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:33265795 original size:447 final size:447
Alignment explanation
Indices: 33264939--33265802 Score: 1080
Period size: 447 Copynumber: 1.9 Consensus size: 447
33264929 ATCTTAGACT
33264939 GGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACG
1 GGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACG
* * ** * *
33265004 AGCGTGCGGGCGTTCAGCTGACCAGAGAGGTAGAATGCACAAGCCGGGGATCGGCTCGATCCCCC
66 AGCGTGCGGGCATTCAGCTGACCAGAGAGGCAGAATGCACAAGCCACGGATCAGCCCGATCCCCC
* ** *
33265069 CTGCATGTTGTCAATCCTACTGTCGTAACCCTCAATCCGATCTAATATTAGACTAGGAATGAACT
131 CTGCATGTTATCAATCCTACTACCGCAACCCTCAATCCGATCTAATATTAGACTAGGAATGAACT
* * ** * * * *
33265134 CCGTATGCCTAAGTCAACCCACGAAATGAGTGTGCGGGCACTGAGCCGACCGAAGAGGCATAATG
196 CCATATGCATAAGTCAACCCACGAAACAAGCGTACGGGCACTGAGCAGACCGAAAAGGCATAATG
* * * * * ** *
33265199 CACAAGTCAGGGATCGGCTTGGTCCCCCTCTAGGTGCTGCCGGTCCCGTTGCCACAACCCTCGGT
261 CACAAGCCAGGGATCAGCTCGATCCCCCTCTAGGTGCTACCGGTCCCACTGCCACAAACCTCGGT
* * * ** *
33265264 TCGGTTGGGGCTTAGACATGCAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTACG
326 TCGGCTAGGGCTTAGACATGCAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGACGTACA
* *
33265329 GGCGGTCAGCCGGCCAGAGAGGCAGAATGCGCAAGTCAACCCACGAAACGAGCGTGG
391 GGCGCTCAACCGGCCAGAGAGGCAGAATGCGCAAGTCAACCCACGAAACGAGCGTGG
* * *
33265386 GGGAATGAACTTCGTATGCTTAGAC-TGGGGATGAACT-TCGTATGCCTAAGTCAACCCACGAAA
1 GGGAATGAACTCCGTATGCTTAGACAT-GGAATGAACTCT-GTATGCCTAAGCCAACCCACGAAA
* * * * * *
33265449 TGAGCGTGCGGGCATTGAG-TCGACCGGAGAGGCATAATGCACGAGCCACGGATTAGCCCGATCC
64 CGAGCGTGCGGGCATTCAGCT-GACCAGAGAGGCAGAATGCACAAGCCACGGATCAGCCCGATCC
* * * * * * * *
33265513 CCCCTGCGTGTTATCGATCCTGCTACCGCAACCCTCGATCCGGT-TCGATCTTAGACTGGGAATG
128 CCCCTGCATGTTATCAATCCTACTACCGCAACCCTCAATCCGATCT-AATATTAGACTAGGAATG
*
33265577 AACTCCATATGCATAAGTCAACCTACGAAACAAGCGTACGGGCACTGAGCTAG-CCGAAAAGGCA
192 AACTCCATATGCATAAGTCAACCCACGAAACAAGCGTACGGGCACTGAGC-AGACCGAAAAGGCA
*
33265641 TAATCTGGA-AA-CCAGGGATCAGCTCGATCCCCCTCT-GTGTGCTACCGGTCCCACTGCCACAA
256 TAA--TGCACAAGCCAGGGATCAGCTCGATCCCCCTCTAG-GTGCTACCGGTCCCACTGCCACAA
*
33265703 ACCTCGG-TCTGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAAC
318 ACCTCGGTTC-GGCTAGGGCTTAGACATGCAATGAACTCCCTATGCCTAAGCCAACCCACAAAAC
* *
33265767 GGACGTGCAGGCGCTCAACCGTCCAGAGAGGCAGAA
382 GGACGTACAGGCGCTCAACCGGCCAGAGAGGCAGAA
33265803 CACACAAGTC
Statistics
Matches: 352, Mismatches: 56, Indels: 18
0.83 0.13 0.04
Matches are distributed among these distances:
446 7 0.02
447 339 0.96
448 3 0.01
449 3 0.01
ACGTcount: A:0.26, C:0.28, G:0.27, T:0.19
Consensus pattern (447 bp):
GGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACG
AGCGTGCGGGCATTCAGCTGACCAGAGAGGCAGAATGCACAAGCCACGGATCAGCCCGATCCCCC
CTGCATGTTATCAATCCTACTACCGCAACCCTCAATCCGATCTAATATTAGACTAGGAATGAACT
CCATATGCATAAGTCAACCCACGAAACAAGCGTACGGGCACTGAGCAGACCGAAAAGGCATAATG
CACAAGCCAGGGATCAGCTCGATCCCCCTCTAGGTGCTACCGGTCCCACTGCCACAAACCTCGGT
TCGGCTAGGGCTTAGACATGCAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGACGTACA
GGCGCTCAACCGGCCAGAGAGGCAGAATGCGCAAGTCAACCCACGAAACGAGCGTGG
Found at i:33265933 original size:159 final size:156
Alignment explanation
Indices: 33265404--33266273 Score: 516
Period size: 159 Copynumber: 5.5 Consensus size: 156
33265394 ACTTCGTATG
* * * ** ** * **
33265404 CTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCATTGAGT
1 CTTAGAATGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAAC
* * * * * * *
33265469 CGACCGGAGAGGCATAATGCACGAGCC-ACGGAT-TAGCCCGATCCCCCCTGCGTGTTATCGATC
66 CGACCAGAGAGGCAGAATGCGCAAGCCGA-GGATCGA-CCCG-TCCCCCCTGCATGCT-TCGATC
* * * *
33265532 CTGCTACCGCAACCCTCGATCCGGT-TCGAT
127 CTGCTACCACAACCTTCGGTCTGGTCT-GAT
* * * * * * * *
33265562 CTTAGACTGGGAATGAACTCCATATGCATAAGTCAACCTACGAAACAAGCGTACGGGCACT-GAG
1 CTTAGAATGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAAC
* * * * * * ** *
33265626 CTAGCC-GAAAAGGCATAAT-CTGGAAACC-AGGGATC-AGCTCGATCCCCCTCTGTGTGCTACC
66 CGA-CCAG-AGAGGCAGAATGC-GCAAGCCGA-GGATCGA-CCCG-TCCCCC-CTGCATGCT-TC
* ** * **
33265687 GGTCCCACTGCCACAAACC-TCGGTCTGG-CTAGGG
123 GATCCTGCTACCAC-AACCTTCGGTCTGGTCT-GAT
* * * * *
33265721 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACAAAAC-GGACGTGCAGGCGCTCA
1 CTTAGA-ATGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAG-CGTGCGGGCGCTCA
* ** * * * *
33265784 ACCGTCCAGAGAGGCAGAACACACAAGTCGGGGATTGACCCAGTCTCCCCCTGCATGCTATCGAT
64 ACCGACCAGAGAGGCAGAATGCGCAAGCCGAGGATCGACCC-GTC-CCCCCTGCATGCT-TCGAT
* * *
33265849 CCTGCTGCTACAACCTTCGATCTGGTCTGAT
126 CCTGCTACCACAACCTTCGGTCTGGTCTGAT
* * * * * *
33265880 CTTAGATTGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTGCGGGTGCTTAAC
1 CTTAGAATGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAAC
* * * * * *
33265945 CGACC-GAAGAGGCATAATGCGTAAACCGAGGATCGACCCGGTCCCTCTCTGCATGCTGCTGGTC
66 CGACCAG-AGAGGCAGAATGCGCAAGCCGAGGATCGACCC-GTCCC-CCCTGCATGCTTC-GAT-
* * * * **
33266009 CCT-TTACCACAACCGTCGGTCCGAT-TGGGG
126 CCTGCTACCACAACCTTCGGTCTGGTCT-GAT
* * * *
33266039 CTTAGACAT-GGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCACTTAC
1 CTTAGA-ATGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAA
* * * *
33266103 CCGGCCAGTGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGATCCCCCCTGCGTGCTTTCGATCC
65 CCGACCAGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCG-TCCCCCCTGCATGC-TTCGATCC
*
33266168 TGCTACCGCAA-CTGTCGGT-TCGGTCTGAT
128 TGCTACCACAACCT-TCGGTCT-GGTCTGAT
* * *
33266197 CTTAGACTGGGAATGAACTCCGTATGCCTAAGACAACCCATGAAACAAGCGTGCGGGCGCTCAAC
1 CTTAGAATGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAAC
* *
33266262 CGATCGGAGAGG
66 CGACCAGAGAGG
33266274 TCGATCGAAG
Statistics
Matches: 542, Mismatches: 136, Indels: 68
0.73 0.18 0.09
Matches are distributed among these distances:
157 9 0.02
158 185 0.34
159 325 0.60
160 23 0.04
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.20
Consensus pattern (156 bp):
CTTAGAATGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAAC
CGACCAGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGTCCCCCCTGCATGCTTCGATCCTGC
TACCACAACCTTCGGTCTGGTCTGAT
Found at i:33266042 original size:318 final size:317
Alignment explanation
Indices: 33265505--33266273 Score: 838
Period size: 318 Copynumber: 2.4 Consensus size: 317
33265495 CACGGATTAG
* * *
33265505 CCCGATCCCCCCTGCGTGTTATCGATCCTGCTACCGCAACCCTCGATCCGGT-TCGATCTTAGAC
1 CCCGATCCCCCCTGCGTGCTATCGATCCTGCTACCGCAACCTTCGATCTGGTCT-GATCTTAGAC
* * * * * * * *
33265569 TGGGAATGAACTCCATATGCATAAGTCAACCTACGAAACAAGCGTACGGGCAC-TGAGCTAGCCG
65 TGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACAAGCGTGCGGGCGCTTAACCGA-CCG
* * ** *
33265633 AAAAGGCATAATCTGGAAACCAGGGATCAGCTCGATCCCCCTCTGTGTGCTACCGGTCCCACTGC
129 AAGAGGCATAATCTGGAAACCAGGGATCAGCCCGATCCCCCTCTGCATGCTACCGGTCCCACTAC
* *
33265698 CACAAACCTCGGTCTGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACA
194 CACAAACCTCGGTCCGACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACA
* * * * * *
33265763 AAAC-GGACGTGCAGGCGCTCAACCGTCCAGAGAGGCAGAACACACAAGTCGGGGATTGA
259 AAACAAG-CGTGCAGGCACTCAACCGGCCAGAGAGGCAGAACACACAAGCCGAGGATCGA
* * **
33265822 CCC-AGTCTCCCCCTGCATGCTATCGATCCTGCTGCTACAACCTTCGATCTGGTCTGATCTTAGA
1 CCCGA-TC-CCCCCTGCGTGCTATCGATCCTGCTACCGCAACCTTCGATCTGGTCTGATCTTAGA
* * *
33265886 TTGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTGCGGGTGCTTAACCGACCG
64 CTGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACAAGCGTGCGGGCGCTTAACCGACCG
* * * * * **
33265951 AAGAGGCATAATGC-GTAAACC-GAGGATC-GACCCGGTCCCTCTCTGCATGCTGCTGGTCCCTT
129 AAGAGGCATAAT-CTGGAAACCAG-GGATCAG-CCCGATCCCCCTCTGCATGCTACCGGTCCCAC
* * * * *
33266013 TACCAC-AACCGTCGGTCCGATTGGGGCTTAGACATGGAATGAACTTCGTATGCCTAAGTCAACC
191 TACCACAAACC-TCGGTCCGACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
* * * * * ** * *
33266077 CACGAAACAAGCGTGCGGGCACTTACCCGGCCAGTGAGGCAGAATGCGCAAGCCGAGGATCGG
255 CACAAAACAAGCGTGCAGGCACTCAACCGGCCAGAGAGGCAGAACACACAAGCCGAGGATCGA
* *
33266140 CCCGATCCCCCCTGCGTGCTTTCGATCCTGCTACCGCAA-CTGTCGGT-TCGGTCTGATCTTAGA
1 CCCGATCCCCCCTGCGTGCTATCGATCCTGCTACCGCAACCT-TCGATCT-GGTCTGATCTTAGA
* * * *
33266203 CTGGGAATGAACTCCGTATGCCTAAGACAACCCATGAAACAAGCGTGCGGGCGCTCAACCGATCG
64 CTGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACAAGCGTGCGGGCGCTTAACCGACCG
*
33266268 GAGAGG
129 AAGAGG
33266274 TCGATCGAAG
Statistics
Matches: 374, Mismatches: 66, Indels: 24
0.81 0.14 0.05
Matches are distributed among these distances:
316 4 0.01
317 119 0.32
318 243 0.65
319 8 0.02
ACGTcount: A:0.25, C:0.30, G:0.25, T:0.20
Consensus pattern (317 bp):
CCCGATCCCCCCTGCGTGCTATCGATCCTGCTACCGCAACCTTCGATCTGGTCTGATCTTAGACT
GGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACAAGCGTGCGGGCGCTTAACCGACCGAA
GAGGCATAATCTGGAAACCAGGGATCAGCCCGATCCCCCTCTGCATGCTACCGGTCCCACTACCA
CAAACCTCGGTCCGACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAA
ACAAGCGTGCAGGCACTCAACCGGCCAGAGAGGCAGAACACACAAGCCGAGGATCGA
Found at i:33266587 original size:26 final size:26
Alignment explanation
Indices: 33266551--33266603 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
33266541 CCTGTCTAGT
*
33266551 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
33266577 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
33266603 C
1 C
33266604 CTAAGCCAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:33268220 original size:159 final size:157
Alignment explanation
Indices: 33267789--33268292 Score: 475
Period size: 159 Copynumber: 3.2 Consensus size: 157
33267779 AACTCCATAT
* *
33267789 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGGGCGTGCGGGCGCTCAG
* * *
33267854 CCGGTCGGAGAGGCAAAATGCGCAAGCCGAGGATCGACCTGGTCCCCCCCTAAC-TGCTGTCGAT
66 ACGGTCGAAGAGGCAAAATGCGCAAG-CGAGGATCGACC-GGTCCCCCTCT-ACGTGCTGTCGAT
* *
33267918 CCTGCTGTTGCAACCCTCAGTCCGATCCAA
128 CCTGCTGTCGCAACCCTCGGTCCGATCCAA
* ** * ** *
33267948 TCTTAGAC-TGGGAATGAACTCCGTATGCAAAAG-TCAACCCACGAAATGACCGTGCGGGCGCTG
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCT-AACCCACGAAACGGGCGTGCGGGCGCTC
** * * * *
33268011 A-ACAGACCGAAGAGG-AATAATGCGCAAGCTGGGGATCAGCCCGGTCCCCCTCTGCGTGCTGCC
64 AGAC-GGTCGAAGAGGCAA-AATGCGCAAGC-GAGGATC-GACCGGTCCCCCTCTACGTGCTGTC
* * * * * ****
33268074 GATCCCGCTGCCACAACCCTCGGTCTGGTTGGG
125 GATCCTGCTGTCGCAACCCTCGGTCCGATCCAA
* *
33268107 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCTAACCCATGAAACGGGCAG-GCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGGGC-GTGCGGGCGCTCA
* * *
33268171 GTCGGTCGAAGAGGCAGAATGCGCAAGTCGAGGATCGACTCGGTCCCCCT-TACGTGCTGTTGAT
65 GACGGTCGAAGAGGCAAAATGCGCAAG-CGAGGATCGAC-CGGTCCCCCTCTACGTGCTGTCGAT
* * *
33268235 CTTGCTGTCGCAACCCTCGGTCCGGTCCGA
128 CCTGCTGTCGCAACCCTCGGTCCGATCCAA
* * *
33268265 TCTTAGA-TTGTGAATGAACTCCATATGC
1 GCTTAGACATG-GAATGAACTCCGTATGC
33268293 TTAGACTGGG
Statistics
Matches: 274, Mismatches: 56, Indels: 31
0.76 0.16 0.09
Matches are distributed among these distances:
157 2 0.01
158 63 0.23
159 200 0.73
160 9 0.03
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGGGCGTGCGGGCGCTCAG
ACGGTCGAAGAGGCAAAATGCGCAAGCGAGGATCGACCGGTCCCCCTCTACGTGCTGTCGATCCT
GCTGTCGCAACCCTCGGTCCGATCCAA
Found at i:33268745 original size:355 final size:355
Alignment explanation
Indices: 33268069--33268747 Score: 826
Period size: 355 Copynumber: 1.9 Consensus size: 355
33268059 CCTCTGCGTG
*
33268069 CTGCCGATCCCGCTGCCACAACCCTCGGTCTGGTTGGGGCTTAGACATGGAATGAACTCCCTATG
1 CTGCCGATCCCGCTACCACAACCCTCGGTCTGGTTGGGGCTTAGACATGGAATGAACTCCCTATG
* * * * * ** ** *
33268134 CCTAAGCTAACCCATGAAACGGGCAGGCGGGCGCTCAGTCGGTCGAAGAGGCAGAATGCGCAAGT
66 CCTAAGCCAACCCACGAAACGAGCAGACGGGCACTCAACCGACCGAAGAGGCAGAATGCGCAAGC
* * * * * *
33268199 CGAGGATCGACTCGGTCCCCCTTACGTGCTGTTGATCTTGCTGTCGCAACCCTCGGTCCGGTCCG
131 CGAGGATCGACTCGGTCCCCCTTACGTGCTGTCGATCCTACTGCCGCAACCCTCAGTCCGATCCG
** *
33268264 ATCTTAGATTGTGAATGAACTCCATATGCTTAGACTGGGGATGAACTCTGTACGCCTAAGTCAAC
196 ATCTTAGACAGTGAATGAACTCCATATGCTTAGACTGGGGATGAACTCAGTACGCCTAAGTCAAC
* * * * * * ** * * * * *
33268329 CCATGAAACGAGCGTGTGGGTGCTTAGTTGGCCAGAGAGGCATAATACGTAAGCTGGGGATCGAC
261 CCACGAAACGAGCATGCGAGCGCTCAGCCGACCAGAGAGGCAGAACACGCAAGCCGGGGATCGAC
33268394 CCGATCCCCCTCTGCATGCTATCGATCCCA
326 CCGATCCCCCTCTGCATGCTATCGATCCCA
* * * * ***
33268424 CTGCCGGTCCTGCTACCACAACCCTCAGT-TCGGTTGGGGCTTAGACATGGAATGAATTTTGTAT
1 CTGCCGATCCCGCTACCACAACCCTCGGTCT-GGTTGGGGCTTAGACATGGAATGAACTCCCTAT
33268488 GCCTAAGCCAACCCACGAAACGAGC-GTACGGGCACTCAACCGACC-AGAGAGGCAGAATGCGCA
65 GCCTAAGCCAACCCACGAAACGAGCAG-ACGGGCACTCAACCGACCGA-AGAGGCAGAATGCGCA
* * * * *
33268551 AGCCGGGGATTGCCTCGGTCCCCCTTGCGTGCTGTCGGTCCTACTGCCGCAACCCTCAGTCCGAT
128 AGCCGAGGATCGACTCGGTCCCCCTTACGTGCTGTCGATCCTACTGCCGCAACCCTCAGTCCGAT
* * * *
33268616 CCGATGTTAGACCAG-GAATGAACTTCGTATGCTTAGACTGGGGATGAACTCAGTATGCCTAAGT
193 CCGATCTTAGA-CAGTGAATGAACTCCATATGCTTAGACTGGGGATGAACTCAGTACGCCTAAGT
* * *
33268680 CAACCCACGAAATGAGCATGCGAGCGCTCAGCCGACCAGAGAGGCAGGACGCGCAAGCCGGGGAT
257 CAACCCACGAAACGAGCATGCGAGCGCTCAGCCGACCAGAGAGGCAGAACACGCAAGCCGGGGAT
33268745 CGA
322 CGA
33268748 ACGGGTGGTA
Statistics
Matches: 268, Mismatches: 52, Indels: 8
0.82 0.16 0.02
Matches are distributed among these distances:
354 3 0.01
355 264 0.99
356 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (355 bp):
CTGCCGATCCCGCTACCACAACCCTCGGTCTGGTTGGGGCTTAGACATGGAATGAACTCCCTATG
CCTAAGCCAACCCACGAAACGAGCAGACGGGCACTCAACCGACCGAAGAGGCAGAATGCGCAAGC
CGAGGATCGACTCGGTCCCCCTTACGTGCTGTCGATCCTACTGCCGCAACCCTCAGTCCGATCCG
ATCTTAGACAGTGAATGAACTCCATATGCTTAGACTGGGGATGAACTCAGTACGCCTAAGTCAAC
CCACGAAACGAGCATGCGAGCGCTCAGCCGACCAGAGAGGCAGAACACGCAAGCCGGGGATCGAC
CCGATCCCCCTCTGCATGCTATCGATCCCA
Found at i:33269282 original size:11 final size:11
Alignment explanation
Indices: 33269251--33269275 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
33269241 CGGTTACGCT
33269251 CTCCGACGATG
1 CTCCGACGATG
33269262 CTCCGACGATG
1 CTCCGACGATG
33269273 CTC
1 CTC
33269276 TGGCGATTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.16, C:0.40, G:0.24, T:0.20
Consensus pattern (11 bp):
CTCCGACGATG
Found at i:33269887 original size:26 final size:26
Alignment explanation
Indices: 33269851--33269955 Score: 174
Period size: 26 Copynumber: 4.0 Consensus size: 26
33269841 TCGGTCCAAT
* *
33269851 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
33269877 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
33269903 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
33269929 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
33269955 C
1 C
33269956 CTAAGTCAAC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 74 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:33269929 original size:52 final size:52
Alignment explanation
Indices: 33269851--33269955 Score: 192
Period size: 52 Copynumber: 2.0 Consensus size: 52
33269841 TCGGTCCAAT
*
33269851 CTTAGATTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATG
*
33269903 CTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATG
33269955 C
1 C
33269956 CTAAGTCAAC
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 51 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.30
Consensus pattern (52 bp):
CTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATG
Found at i:33270849 original size:26 final size:26
Alignment explanation
Indices: 33270806--33270865 Score: 79
Period size: 26 Copynumber: 2.4 Consensus size: 26
33270796 CCTCGATCCG
33270806 ATCCG-AT-CTTAGACTGGGAATGAA
1 ATCCGTATGCTTAGACTGGGAATGAA
* *
33270830 ATTCGTATGCTTAGACTGGGGATGAA
1 ATCCGTATGCTTAGACTGGGAATGAA
*
33270856 CTCCGTATGC
1 ATCCGTATGC
33270866 CTAAGTCAAC
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
24 4 0.13
25 2 0.07
26 24 0.80
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.28
Consensus pattern (26 bp):
ATCCGTATGCTTAGACTGGGAATGAA
Found at i:33271916 original size:26 final size:26
Alignment explanation
Indices: 33271866--33271918 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
33271856 GGCTTAAAAT
**
33271866 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
33271892 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
33271918 C
1 C
33271919 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:33272406 original size:26 final size:26
Alignment explanation
Indices: 33272365--33272417 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33272355 CCGGTCTGAT
33272365 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
33272391 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCATATG
33272417 C
1 C
33272418 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:33273438 original size:26 final size:26
Alignment explanation
Indices: 33273402--33273454 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
33273392 CTAGCCTGAT
33273402 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
*
33273428 CTTAGACTGGGGTTGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
33273454 C
1 C
33273455 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCGTATG
Found at i:33273791 original size:26 final size:26
Alignment explanation
Indices: 33273755--33273807 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
33273745 TCGGTCTGAT
33273755 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
33273781 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
33273807 C
1 C
33273808 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:33274166 original size:26 final size:26
Alignment explanation
Indices: 33274122--33274174 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
33274112 CTGATCTGAT
* *
33274122 CTTAGACTAGGAATGAACTCCTTATG
1 CTTAGACTAGGAATAAACTCCGTATG
* *
33274148 CTTAGACTGGGGATAAACTCCGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
33274174 C
1 C
33274175 CTAAGTCAAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATAAACTCCGTATG
Found at i:33274225 original size:367 final size:359
Alignment explanation
Indices: 33273217--33274226 Score: 1186
Period size: 353 Copynumber: 2.8 Consensus size: 359
33273207 TAACGGTCCC
* **
33273217 GCTGCCACAACTCTCAGTCC-AGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
1 GCTGCCACAACCCTTGGTCCGA-CTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
* ** * * * *
33273281 CCCACG-AACGAACGTGCGGGTGCTCAGCCGGTCGGAGAGGCGGAATGCGTAAGTCGGGGATCAG
65 CCCACGAAACGAGCGT--GGGCACTCAGTCGGTCGGAGAGGCGGAATGCGCAAG-CAGGGATCGG
* * * * * * *
33273345 CTCGGTCCCCCTTGTGTGCTGCCGATCCTGCTGTTGTGACCCTCGGTCT-AGCCTGATCTTAGAC
127 CCCGGTCCCCCCTGCGTGCTGCCGATCCTGCTGTCGTAACCCTCAGTCTGA-TCTGATCTTAGAC
* *
33273409 TGGGGATGAACTCCGTATGCTTAGACTGGGGTTGAACTCCGTATGCCTAAGTCAACCCATGAAAC
191 TGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAAC
*
33273474 AAGCATGCGGGCGCTCA---ACC--GA---ACGGAGAGGCATAATGCGCATGCCGGGGATCAGCC
256 AAGCATGCGGGCGCTCAGCGACCGAGAGGCACGGAGAGGCATAATGCGCATGCCGGGGATCAACC
* * * **
33273531 CCGTCCCCTCTGCGTGCTGTCGATCCCGCTATCGGTCCT
321 CCATCCCCTCTGCGTGCTCTCGATCCCACTATCAATCCT
*
33273570 GCTGCCACAACCCTTGGTCTGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
1 GCTGCCACAACCCTTGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
* * * * * *
33273635 CCATGAAACGGGCGTGCGGCACTCAATGGGTCGGAGAGGTGGAATGCGCAAGCTGAGGATCGGCC
66 CCACGAAACGAGCGTG-GGCACTCAGTCGGTCGGAGAGGCGGAATGCGCAAGCAG-GGATCGGCC
* * * * * *
33273700 TGGTCCCCCCTGCGTGCTGTCAATCCTACTGTCGTAACCCTCGATTC-GGTCTGATCTTAGACTG
129 CGGTCCCCCCTGCGTGCTGCCGATCCTGCTGTCGTAACCCTC-AGTCTGATCTGATCTTAGACTG
33273764 GGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACAA
193 GGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACAA
* * * *
33273829 GCATGTGGGTGCTCAGCCGGTCGGAGAGGCCGACCGGAGAGGCATAATGCGCATGCCGGGGATCA
258 GCATGCGGGCGCTCAG-C-GACCGAGAGG-C-A-CGGAGAGGCATAATGCGCATGCCGGGGATCA
* *
33273894 ACCCCATCCCCCTCTGCGTGCTACT-GATCCTACTGTCAATCCT
318 ACCCCAT-CCCCTCTGCGTGCT-CTCGATCCCACTATCAATCCT
*
33273937 GCT-CCACAACCCTTGGTCCGACTGTGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
1 GCTGCCACAACCCTTGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
* * * *
33274001 CCACGAAACGAGCGTAAGGGCACTCAGTCAGCCAGAGAGGCAGAATGCGCAAGCCAGGGATCGGC
66 CCACGAAACGAGCGT--GGGCACTCAGTCGGTCGGAGAGGCGGAATGCGCAAG-CAGGGATCGGC
* * *
33274066 CCGGCCCCCCCTGCGTGCTAG-CGATCCTGCTGACGTAACCCTTAGTCTGATCTGATCTTAGACT
128 CCGGTCCCCCCTGCGTGCT-GCCGATCCTGCTGTCGTAACCCTCAGTCTGATCTGATCTTAGACT
* * * ** * *
33274130 AGGAATGAACTCCTTATGCTTAGACTGGGGATAAACTCCGTATGCCTAAGTCAATGCACGAAACG
192 GGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACA
*
33274195 AGCGTGCGGGCGCTCAGTCGACCAGAGAGGCA
257 AGCATGCGGGCGCTCAG-CGACC-GAGAGGCA
33274227 GGATACGTAA
Statistics
Matches: 554, Mismatches: 76, Indels: 42
0.82 0.11 0.06
Matches are distributed among these distances:
352 3 0.01
353 222 0.40
354 10 0.02
358 1 0.00
360 2 0.00
365 2 0.00
366 114 0.21
367 195 0.35
368 5 0.01
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.20
Consensus pattern (359 bp):
GCTGCCACAACCCTTGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
CCACGAAACGAGCGTGGGCACTCAGTCGGTCGGAGAGGCGGAATGCGCAAGCAGGGATCGGCCCG
GTCCCCCCTGCGTGCTGCCGATCCTGCTGTCGTAACCCTCAGTCTGATCTGATCTTAGACTGGGA
ATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCA
TGCGGGCGCTCAGCGACCGAGAGGCACGGAGAGGCATAATGCGCATGCCGGGGATCAACCCCATC
CCCTCTGCGTGCTCTCGATCCCACTATCAATCCT
Found at i:33278325 original size:159 final size:159
Alignment explanation
Indices: 33278019--33278328 Score: 372
Period size: 160 Copynumber: 1.9 Consensus size: 159
33278009 AACTCCGTAT
* * * * * *
33278019 GCTTAGACATGTAATGAACTTCTTATGCCTAAGCCAACCTATGAAACGATCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGATCGTGCGGGCGCTCAG
* * * * * * * * **
33278084 CCGATCGGAGAGGCAGAATGTGCAAGCTGGGGATTGGCTCGATCCCCCTCTGCGTGCTGTCGGTC
66 CCGATCGGAGAGGCAGAATGCGCAAACTGAGGATCGACCCGATACCCCTCTACGTGCTGTCGACC
33278149 ATGCTGCCACAACCCTCGGTCCGATTGGG
131 ATGCTGCCACAACCCTCGGTCCGATTGGG
33278178 GCTTAGACATGGAATGAAACTCCCTATGCCTAAGCCAACCCACGAAACGGA-CGTGCGGGCGCTC
1 GCTTAGACATGGAATG-AACTCCCTATGCCTAAGCCAACCCACGAAAC-GATCGTGCGGGCGCTC
* * * * *
33278242 AGCCGGTCGGAGAGGTAGATTGCGTAAATTGAGGATCGACCCGATACCCC-CTACGTGCTGTCGA
64 AGCCGATCGGAGAGGCAGAATGCGCAAACTGAGGATCGACCCGATACCCCTCTACGTGCTGTCGA
* **
33278306 CCCTGCTGCCGTAACCCTCGGTC
129 CCATGCTGCCACAACCCTCGGTC
33278329 TAGTTAGATC
Statistics
Matches: 125, Mismatches: 24, Indels: 4
0.82 0.16 0.03
Matches are distributed among these distances:
159 46 0.37
160 77 0.62
161 2 0.02
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.21
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGATCGTGCGGGCGCTCAG
CCGATCGGAGAGGCAGAATGCGCAAACTGAGGATCGACCCGATACCCCTCTACGTGCTGTCGACC
ATGCTGCCACAACCCTCGGTCCGATTGGG
Found at i:33281086 original size:26 final size:26
Alignment explanation
Indices: 33281028--33281087 Score: 63
Period size: 26 Copynumber: 2.4 Consensus size: 26
33281018 CCTCGGTCCG
33281028 ATCTG-AT-CTTAGACTGGGAATGAA
1 ATCTGTATGCTTAGACTGGGAATGAA
* **
33281052 CTCCATATGCTTAGACAT-GGAATGAA
1 ATCTGTATGCTTAGAC-TGGGAATGAA
33281078 ATCTGTATGC
1 ATCTGTATGC
33281088 CTAAGCCAAC
Statistics
Matches: 27, Mismatches: 6, Indels: 4
0.73 0.16 0.11
Matches are distributed among these distances:
24 2 0.07
25 2 0.07
26 22 0.81
27 1 0.04
ACGTcount: A:0.32, C:0.17, G:0.22, T:0.30
Consensus pattern (26 bp):
ATCTGTATGCTTAGACTGGGAATGAA
Found at i:33282565 original size:26 final size:26
Alignment explanation
Indices: 33282536--33282588 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
33282526 GTTGACTTCG
* *
33282536 GCATATGGAGTTTATCTCC-AGTCTAA
1 GCATATAGAGTTCAT-TCCAAGTCTAA
33282562 GCATATAGAGTTCATTCCAAGTCTAA
1 GCATATAGAGTTCATTCCAAGTCTAA
33282588 G
1 G
33282589 ATCAGATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 3 0.12
26 21 0.88
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATATAGAGTTCATTCCAAGTCTAA
Found at i:33283453 original size:26 final size:26
Alignment explanation
Indices: 33283416--33283468 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
33283406 ATTGACTTAG
*
33283416 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
33283442 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
33283468 G
1 G
33283469 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:33284177 original size:26 final size:26
Alignment explanation
Indices: 33284141--33284192 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
33284131 GTTGACTTGG
33284141 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
33284167 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
33284193 AATCAAACCA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:33284361 original size:26 final size:26
Alignment explanation
Indices: 33284325--33284377 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
33284315 GTTGGCTTAG
*
33284325 GCATACAGAGTTTATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
33284351 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
33284377 G
1 G
33284378 ACTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:33285834 original size:159 final size:158
Alignment explanation
Indices: 33285461--33285838 Score: 454
Period size: 159 Copynumber: 2.4 Consensus size: 158
33285451 CCCAGTCTAA
* * * *
33285461 GCATACGGAGTTCATTCCTAGTCTAAGATCGAATCAGATCGAGGGTTGTGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAATCGGATCAAGGGTTGTGGCAGCAGGACCGACA
* * * *
33285526 GCACGTAGAGGGGACTGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTTCGGTCGACTGAGTGCC
66 GCACGTAGAGGGGACTGGGCCGATCCCTGGCTTACGCATTCTACCTCTCCAGTCGACTGAGTGCC
* *
33285591 TGCACGCCCATTTCGTGGGTTGGCTTAG
131 CGCACGCCCATTTCGTGGATTGGCTTAG
* * ** * *
33285619 GCATAGGGAGTTCATT-CCATGTCTAAG-CCCCAGCTGGATTAAGGGTTGTGGCAGCAGGACCGA
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCGAATC-GGATCAAGGGTTGTGGCAGCAGGACCGA
* * * * **
33285682 CAGCACGTAGAGGGGGACTGGGTCGATCCTTGGCTTATGCATTTTACCTCTCCAGTCGGTTGAGT
64 CAGCACGTAGA-GGGGACTGGGCCGATCCCTGGCTTACGCATTCTACCTCTCCAGTCGACTGAGT
* *
33285747 GCCCGCACGCTCGTTTCGTGGATTGGCTTAG
128 GCCCGCACGCCCATTTCGTGGATTGGCTTAG
* * * * *
33285778 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCAAGGCTTGTTGTAGCAGGACC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAATCGGATCAAGGGTTGTGGCAGCAGGACC
33285839 AGCAACGAGA
Statistics
Matches: 181, Mismatches: 34, Indels: 9
0.81 0.15 0.04
Matches are distributed among these distances:
157 5 0.03
158 57 0.31
159 113 0.62
160 6 0.03
ACGTcount: A:0.19, C:0.25, G:0.31, T:0.25
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGAATCGGATCAAGGGTTGTGGCAGCAGGACCGACA
GCACGTAGAGGGGACTGGGCCGATCCCTGGCTTACGCATTCTACCTCTCCAGTCGACTGAGTGCC
CGCACGCCCATTTCGTGGATTGGCTTAG
Found at i:33286033 original size:171 final size:171
Alignment explanation
Indices: 33285747--33286134 Score: 374
Period size: 171 Copynumber: 2.3 Consensus size: 171
33285737 TCGGTTGAGT
* * * *
33285747 GCCCGCACGCTCGTTTCGTGGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGAT
1 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACCGAGTTCATTCACAGTCTAAGATCGGAC
* * * * * *
33285812 CGGACCAAGGCTTGTTGTAGCAGGACCAGCAACGAGATCGATAGCACATAGGGAGGGA-TCGGGC
66 CGAACCAAGGCTTGTGGTAACAGGACCAGCAACGAGATCGACAACACATAGAGAGGGACT-GGGC
* * * **
33285876 CGATCCCCGGCTTGTGCATTCTACCTCTCCGGCTAG-TTGAAC
130 CGATCCCCGACTTGCGCATTATACCTCTCCGGC-AGACCGAAC
* * * *
33285918 GCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACCGAGTTCATT-ACATGTCTATGCCTTGG
1 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACCGAGTTCATTCACA-GTCTAAG-ATCGG
* * * * * *
33285982 -CCGAACCGAGGGTTGTGGTAACAGGA-CTGACAATGGGATCGACAACACATAGAGTGGGACTGG
64 ACCGAACCAAGGCTTGTGGTAACAGGACCAG-CAACGAGATCGACAACACATAGAGAGGGACTGG
* * * * * *
33286045 GCTGATCCCTGACTTGCGTATTATGCCTCTCTGGCCGACCGAAC
128 GCCGATCCCCGACTTGCGCATTATACCTCTCCGGCAGACCGAAC
* * *
33286089 ACCCACACGCTCGTTTCGTGGGTTGACTTAGGCATA-CGACGTTCAT
1 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACCGA-GTTCAT
33286135 CCCCAGTCAT
Statistics
Matches: 176, Mismatches: 35, Indels: 12
0.79 0.16 0.05
Matches are distributed among these distances:
170 8 0.05
171 164 0.93
172 4 0.02
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (171 bp):
GCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACCGAGTTCATTCACAGTCTAAGATCGGAC
CGAACCAAGGCTTGTGGTAACAGGACCAGCAACGAGATCGACAACACATAGAGAGGGACTGGGCC
GATCCCCGACTTGCGCATTATACCTCTCCGGCAGACCGAAC
Found at i:33287277 original size:341 final size:339
Alignment explanation
Indices: 33286636--33287588 Score: 970
Period size: 343 Copynumber: 2.8 Consensus size: 339
33286626 ACCCGTTCGA
* * * * *
33286636 TCCCCGGCTTGCGCATCCTGCCTCTTCGACCGCCTGAGCGCCCGCACGCTTGTTTCGTGGGTTGG
1 TCCCCGGCTTGTGCATTCTGCCTCTTCGACCGGCTGAGCGCCCACACGCTCGTTTCGTGGGTTGG
*
33286701 CTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATGGAGTTCATTCC----CA-A-C--T-AG
66 CTTAGGCATACGGAGTTCATTCCA-GTCTAAGCATATGGAGTTCATTCCAGTTAAGATCGATCAG
* * * * * * *
33286757 ATCGAGGGTTGTGGCAGCGGGACCGCAT--CATGCAGAGGGGGCCCGAG-CTAATCCCTAACTTG
130 ACCGAGGGTTGTGACAGCAGGATCG-ATAGCATGCA-AGGGGGACCGAGTC-GATCCCTAGCTTG
* * * * * * * * *
33286819 CGCATTATGCCTCTCCGATCGGCTCAGTGCCTGCACGCTCATTTCGTGGGTTGGCTTAGGCATAC
192 TGCATTCTGCCTCTCCGACCGGCTGAGGGCCCGCACGCCCATTTCATGGGTTAGCTTAGGCATAC
* * * * * * * *
33286884 AGATTTAACTCCCAGTCTAAGACTGGACCGAACTAAGGGTTGCGACAGTAGGATCGAT-AGAA-C
257 AGAGTTCATTCCCAGTCTAAGACTAGACAGAACTAAGGGTTACGACAGTAGGATCAATAACAAGC
* ** *
33286947 GTAAGAGGGACTGGGCCGG
322 -AAAGAGGGACCAGACCGG
* * * *
33286966 TCCCCGGCTTGTGCATTCTACCTCTTTGACCGGCTGAGCGCCCACACACTCGTTTCATGGGTTGG
1 TCCCCGGCTTGTGCATTCTGCCTCTTCGACCGGCTGAGCGCCCACACGCTCGTTTCGTGGGTTGG
*
33287031 CTTAGGCATACGGAGTTCATTCCAGTCTAACCATATGGAGTTCATTCTCAGTATAAGATCGGATC
66 CTTAGGCATACGGAGTTCATTCCAGTCTAAGCATATGGAGTTCATTC-CAGT-TAAGATC-GATC
33287096 AGACCGAGGGTTGTGACAGCAGGATCGATAGCATGCAAGGGGGACCGAGTCGATCCCTAGCTTGT
128 AGACCGAGGGTTGTGACAGCAGGATCGATAGCATGCAAGGGGGACCGAGTCGATCCCTAGCTTGT
** *
33287161 GCATTCCCCCTCTCCGACCGGTTGAGGGCCCGCACGCCCATTTCATGGGTTAGCTTAGGCATACA
193 GCATTCTGCCTCTCCGACCGGCTGAGGGCCCGCACGCCCATTTCATGGGTTAGCTTAGGCATACA
* * **
33287226 GAGTTCATTCCCAGTCTAAGA-TCAGATCAGATC-GAGGGTTACGGTAGTAGGATCAATAACAAG
258 GAGTTCATTCCCAGTCTAAGACT-AGA-CAGAACTAAGGGTTACGACAGTAGGATCAATAACAAG
*
33287289 CAAAGAGGGACCAGACTGG
321 CAAAGAGGGACCAGACCGG
* * * * * * * *
33287308 TCCTCGGCTTGCT-TATTCTGCCCCTCCGGCCGGCTGAGCACCCATACGCTCGTTCCGTGGGTTG
1 TCCCCGGCTTG-TGCATTCTGCCTCTTCGACCGGCTGAGCGCCCACACGCTCGTTTCGTGGGTTG
* * *
33287372 GCTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATGTGGAGTTCATTCACAGTCTAAGATCAGA
65 GCTTAGGCATACGGAGTTCAT-TCCAGTCTAAGCATATGGAGTTCATTC-CAGT-TAAGATC-GA
* * * * * * * * * *
33287437 CCGGACTGAGGGTTGCGACAGCAGGATCGACAGCACGTAAGGGGGATCGGGTCGATCCCCAGCTT
126 TCAGACCGAGGGTTGTGACAGCAGGATCGATAGCATGCAAGGGGGACCGAGTCGATCCCTAGCTT
* * * *
33287502 GTGCATTCTGCCTCTCCGACCGACTGAGGGCCCGCACACCCATTTTATGGGTTACCTTAGGCATA
191 GTGCATTCTGCCTCTCCGACCGGCTGAGGGCCCGCACGCCCATTTCATGGGTTAGCTTAGGCATA
**
33287567 GGGAGTTCATT-CCATGTCTAAG
256 CAGAGTTCATTCCCA-GTCTAAG
33287589 CCCCAGTCGG
Statistics
Matches: 516, Mismatches: 85, Indels: 31
0.82 0.13 0.05
Matches are distributed among these distances:
329 22 0.04
330 81 0.16
335 1 0.00
336 1 0.00
337 1 0.00
340 4 0.01
341 138 0.27
342 100 0.19
343 168 0.33
ACGTcount: A:0.21, C:0.27, G:0.27, T:0.24
Consensus pattern (339 bp):
TCCCCGGCTTGTGCATTCTGCCTCTTCGACCGGCTGAGCGCCCACACGCTCGTTTCGTGGGTTGG
CTTAGGCATACGGAGTTCATTCCAGTCTAAGCATATGGAGTTCATTCCAGTTAAGATCGATCAGA
CCGAGGGTTGTGACAGCAGGATCGATAGCATGCAAGGGGGACCGAGTCGATCCCTAGCTTGTGCA
TTCTGCCTCTCCGACCGGCTGAGGGCCCGCACGCCCATTTCATGGGTTAGCTTAGGCATACAGAG
TTCATTCCCAGTCTAAGACTAGACAGAACTAAGGGTTACGACAGTAGGATCAATAACAAGCAAAG
AGGGACCAGACCGG
Found at i:33288525 original size:26 final size:26
Alignment explanation
Indices: 33288495--33288547 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33288485 GTTGACTTAG
33288495 GCATACAGAGTTCA-TCCTCAGTCTAA
1 GCATACAGAGTTCATTCCT-AGTCTAA
*
33288521 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
33288547 G
1 G
33288548 ATCGGATCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:33289032 original size:26 final size:26
Alignment explanation
Indices: 33288995--33289047 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33288985 GTTGGCTTAG
33288995 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTACCA-GTCTAA
*
33289021 GCATACGGAGTTCATTACCAGTCTAA
1 GCATACGAAGTTCATTACCAGTCTAA
33289047 G
1 G
33289048 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTACCAGTCTAA
Found at i:33289315 original size:170 final size:170
Alignment explanation
Indices: 33289054--33289388 Score: 392
Period size: 170 Copynumber: 2.0 Consensus size: 170
33289044 TAAGATCGGA
* * *
33289054 CCGGACTGAGGGTTGCGGCAGCAGGACCAGCAGTAAGATCGACAGCACGCTGGGGTGGACTGGTC
1 CCGGACTGAGGGTTGCGGCAGCAGGACCAGCAGCAAGATCGACAGCACGCAGAGGTGGACTGGTC
* * * *** *
33289119 GATCCTCGGCTTGCGAATTCTGCCTCTCCGGCCGGTTGAGCGCCCGTACGCTCATTTCATGGGTT
66 GATCCTCGGCTTACGAATTATGCCTCTCCAGCCGACCGAGCGCCCGCACGCTCATTTCATGGGTT
** * * *
33289184 GGCTTAGGCATATGGAGTTCAT-TCCATGTCTAAGCCCCAG
131 AACTTAGGCATACGGAATTCATCCCCA-GTCTAAGCCCCAG
* * *
33289224 CCGGACTGAGGGTTGTGGCAGCAGGATC-GACAGCAAGATCGACAGCATGCAGAGG-GGAGC-GA
1 CCGGACTGAGGGTTGCGGCAGCAGGACCAG-CAGCAAGATCGACAGCACGCAGAGGTGGA-CTG-
* * * *
33289286 G-CTGATCCTCGGCTTACGCATTATGCCTCTCCAGCTGACCGAGTGCCCGCATGCTCATTTCATG
63 GTC-GATCCTCGGCTTACGAATTATGCCTCTCCAGCCGACCGAGCGCCCGCACGCTCATTTCATG
33289350 GGTTAACTTAGGCATACGGAATTCATCCCCAGTCTAAGC
127 GGTTAACTTAGGCATACGGAATTCATCCCCAGTCTAAGC
33289389 TTATGGAGTT
Statistics
Matches: 138, Mismatches: 22, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
169 6 0.04
170 129 0.93
171 3 0.02
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.22
Consensus pattern (170 bp):
CCGGACTGAGGGTTGCGGCAGCAGGACCAGCAGCAAGATCGACAGCACGCAGAGGTGGACTGGTC
GATCCTCGGCTTACGAATTATGCCTCTCCAGCCGACCGAGCGCCCGCACGCTCATTTCATGGGTT
AACTTAGGCATACGGAATTCATCCCCAGTCTAAGCCCCAG
Found at i:33290270 original size:26 final size:26
Alignment explanation
Indices: 33290241--33290293 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
33290231 GTTGACTTAG
33290241 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* * *
33290267 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
33290293 G
1 G
33290294 ATTGGACCAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:33290568 original size:159 final size:158
Alignment explanation
Indices: 33290405--33290769 Score: 385
Period size: 158 Copynumber: 2.3 Consensus size: 158
33290395 CCCAAATGCA
* * * *
33290405 CGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAACCGGAATGAGGG
1 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCGAACCGGAACGAAGG
** * *
33290470 TTATGGCAACGGGACC-AGCAGCACGCAGTGGGGGACCAGGTCGATCCCTGGCTTGCGCATTATG
66 TTATGGCAACAAGACCGA-CAGCACGCAG-GGAGGACCAGGTCGATCCCCGGCTTGCGCATTATG
* * *
33290534 CCTATTC-GACCGGTTGAGTGCCCGCACACT
129 CC-ACTCTGACCGGCTGAGCGCCCGCACACT
* * * * ** * *
33290564 CGTTTCGTTGGTTGACTTATGCATACGGAGTTCATTCCCA-GTCTGAGATCGAATCGGACCGAAG
1 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCGAACCGGAACGAAG
* * * * * * *
33290628 TTTGTGGCAGCAAGATCGACAGCACGCAGGGAGGACCGGGTCGATCCCCGGCTTGTGCATTCTGC
65 GTTATGGCAACAAGACCGACAGCACGCAGGGAGGACCAGGTCGATCCCCGGCTTGCGCATTATGC
* * ** *
33290693 CACTCTGGCTGGCTGAGCGTTCGCACGCT
130 CACTCTGACCGGCTGAGCGCCCGCACACT
*
33290722 CATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
1 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
33290770 ATACGGAGTT
Statistics
Matches: 165, Mismatches: 37, Indels: 9
0.78 0.18 0.04
Matches are distributed among these distances:
157 6 0.04
158 86 0.52
159 69 0.42
160 4 0.02
ACGTcount: A:0.19, C:0.25, G:0.30, T:0.25
Consensus pattern (158 bp):
CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCGAACCGGAACGAAGG
TTATGGCAACAAGACCGACAGCACGCAGGGAGGACCAGGTCGATCCCCGGCTTGCGCATTATGCC
ACTCTGACCGGCTGAGCGCCCGCACACT
Found at i:33290778 original size:26 final size:26
Alignment explanation
Indices: 33290742--33290794 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
33290732 GTTGGCTTAG
33290742 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
33290768 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
33290794 G
1 G
33290795 ATTTAATTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:33291145 original size:26 final size:26
Alignment explanation
Indices: 33291109--33291161 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
33291099 GTTGACTTAG
33291109 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
33291135 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
33291161 G
1 G
33291162 ATTGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:33291339 original size:868 final size:868
Alignment explanation
Indices: 33288255--33291665 Score: 3416
Period size: 868 Copynumber: 3.9 Consensus size: 868
33288245 GCCAACAAAA
* ** ** *
33288255 ATTCTGCCTCTCCGTCCGGTTGAGCGCCCGCACGCTTGTTTCGTGGGTTGGCTTAGGCATACGTA
1 ATTCTGCCTCTCCGACCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGA
* * * * ** * * *
33288320 GTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTATGGTAGTAACATCGGCAACGGGATCG
66 GTTCATTCCATGTCTAAGCCCCAGCCGGACTGAGGGTTATGGCAGCAGGACCGGCAGCGAGATCG
* * * *
33288385 GCAGCACGCAGAGGGGGACCAAGCTGATCCCTGGCTTGCGCATTATGCCTCTCCAATCAGCCTCT
131 ACAGCACGCAGAGGGGGATCGAGCTGATCCCCGGCTTGCGC---A----T-T---AT--GCCTCT
* ** * *
33288450 CCAGCCGGTTGAGTGCCCGCACGCTTGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCTCA
183 CCAGCCGGTTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCA
* * * * * *
33288515 GTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCGGA-TCGAATCGTGGGTTACGATAGCAGG
248 GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACTCGAGGGTTGCGACAGCAGG
* ** * * ** * * *
33288579 ATTGGTAGTACGCAGGGGGGACCAGGTAGATCCTCGACTTGCGCATTCTGCCTCTCCTGTCAGTT
313 ATCGACAGCACG-AAGGGGGACCAGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGTCGGTT
*
33288644 GAGTGCCCGCACGCCCGTTTCGTGGGTTGGCATAGGCATAGGGAGTTCATTCCATGTCTAAGCCC
377 GAGTGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCC
* * * *** * * * *
33288709 TAGCCAGAGCGAGAGTTGTGGTAGCAGGATTGGCAGCACGCAGAGGGGGATCGGGCCGATCCCCA
442 TAGCCAGAG-GAGGGTTGTGGCAGCGGGACCAGCAGCACGCAGAGGGGGACCAGGCCGATCCTCG
* * * *
33288774 GCTTGCGCATTATGCCTCTTCGATCGACTAAGTGCCTGCACGCTCGTTTCAT-GGTTGACTTAGG
506 GCTTGCGCATTATGCCTCTTCGACCGACT-AGTGCCCGCACGCTCGTTTCGTGGGTTGACTTATG
* * * * * * *
33288838 CATACGGAGTTCATTCCCAGTGTATGATCAGATCGGATC-AAGGGTTGCAACAGCAGGATTGATA
570 CATACGGAGTTCATTCCCAATCTAAGATCAGATCGGACCGAA-GGTTGCAGCAGCAGGATCGACA
* * * ** * *
33288902 GCATGCAGGGGGGGACCTGG-CTGGTCCCCGGCTTG-GCATTCTACCACTCCAG-TCGACTGAGA
634 GCACGCAGGGGGGGACCGGGTC-GATCCCCGGCTTGCGCATTCTACCACTCTGGCTCGGCTGAGC
* * *
33288964 GCCTGCACATTCGTTTCGTGAGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCATACGG
698 GCCTGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGG
* * * *
33289029 AGTTCATTACCAGTCTAAGATCGGACCGGA-CTGAGGGTTGCGGCAGCAGGACCAGCAGTAAGAT
763 AGTTCATTCCCAGTCTAAGATCGGATCGGATC-GAGGGTTGCGGCAGCAGGACCAGCAGCAGGAT
* * * * *
33289093 CGACAGCACGCTGGGGTGGA-CTGGTCGATCCTCGGCTTGCGA
827 CGATAGCACGCAGGGG-GGACCGGGCCGATCCTCGGCTTGCGC
* ** * * *
33289135 ATTCTGCCTCTCCGGCCGGTTGAGCGCCCGTACGCTCATTTCATGGGTTGGCTTAGGCATATGGA
1 ATTCTGCCTCTCCGACCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGA
* * * *
33289200 GTTCATTCCATGTCTAAGCCCCAGCCGGACTGAGGGTTGTGGCAGCAGGATCGACAGCAAGATCG
66 GTTCATTCCATGTCTAAGCCCCAGCCGGACTGAGGGTTATGGCAGCAGGACCGGCAGCGAGATCG
* * * * * ***
33289265 ACAGCATGCAGA-GGGGAGCGAGCTGATCCTCGGCTTACGCATTATGCCTCTCCAGCTGACCGAG
131 ACAGCACGCAGAGGGGGATCGAGCTGATCCCCGGCTTGCGCATTATGCCTCTCCAGCCGGTTGAG
* * * * * *
33289329 TGCCCGCATGCTCATTTCATGGGTTAACTTAGGCATACGGAATTCATCCCCAGTCTAAGCTTATG
196 CGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACG
* * * *
33289394 GAGTTCATTCCTAGTCTAAGATCGGACTGGA-TCGAGGGTTGCGACAGTAGGATCGACAGTACGT
261 GAGTTCATTCCCAGTCTAAGATCGGACTGGACTCGAGGGTTGCGACAGCAGGATCGACAGCACGA
** * * * * *
33289458 AGGGGGACTGGGCCGATCATCGGCTTGCGCATTCTGCCTCTTCGATCGGCTGAGCGCCCGCACGC
326 AGGGGGACCAGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGTCGGTTGAGTGCCCGCACGC
* * * * *
33289523 TCGTTTCGTGGGTTAGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCAAGCCGGATTGAGG
391 CCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCAGA-GGAGG
** * * * * * *
33289588 GTTGTCACAGCGGGA-TATGCAGCACGCAGTGGGGGATCTGGCCGATCCTCGACTTACGCATTAT
455 GTTGTGGCAGCGGGACCA-GCAGCACGCAGAGGGGGACCAGGCCGATCCTCGGCTTGCGCATTAT
* * * ** * * *
33289652 -CTTCTTCGACTGGCTTAGCT-CCCGCGTGCTCGTTTTGTGGGTTGACTCAAGCATACGGAGTTC
519 GCCTCTTCGACCGAC-TAG-TGCCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTC
** * **
33289715 ATTCCCAATCTAAGATCAGA-CTAAACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCA-GGGG
582 ATTCCCAATCTAAGATCAGATC-GGACCGAAGGTTGCAGCAGCAGGATCGACAGCACGCAGGGGG
* * * * * * * * * *
33289778 GGATCAGGTCGATCCCTGGCTTGCGGATTCTACCTCTTTGAC-CTGTTGAGCGCCCAG-ACACTC
646 GGACCGGGTCGATCCCCGGCTTGCGCATTCTACCACTCTGGCTCGGCTGAGCG-CCTGCACACTC
* * * *
33289841 GTTTCATGGTTTGGCTTAGGCATACGGAGTTCATTCGATGTCTAAGCATACCGAGTTCATTCCCA
710 GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCA
* * * * * *
33289906 ATCTAACATCGGATCAGATCGAGGGTTGCGGCAGCAAGACTAGCAGCAGGATCAATAGCACGCAG
775 GTCTAAGATCGGATCGGATCGAGGGTTGCGGCAGCAGGACCAGCAGCAGGATCGATAGCACGCAG
* *
33289971 GGAGGGACCGGGCCGATCCTAGGCTTGGGC
840 GG-GGGACCGGGCCGATCCTCGGCTTGCGC
* * *
33290001 ATTCTGCCTCTCCGACCGACTGAGTGCTCAG-ATGCTCATTTCGTGGGTTGGCTTAGGCATACGG
1 ATTCTGCCTCTCCGACCGACTGAGCGC-CCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGG
* * * * * * * *
33290065 AGTTCAATCCATGTCTAAGCTCCAGCCGAAAC-GAAGGTTATGACAGCAGGACCGGTAGTGGGAT
65 AGTTCATTCCATGTCTAAGCCCCAGCCG-GACTGAGGGTTATGGCAGCAGGACCGGCAGCGAGAT
* * * *
33290129 TGGCAGCATGCAGAGAGGGATCG-GACTGATCCCCGGCTTGCGCATTATGCCTCTCC-GACCGGC
129 CGACAGCACGCAGAGGGGGATCGAG-CTGATCCCCGGCTTGCGCATTATGCCTCTCCAG-CCGG-
* * * * *
33290192 CTCTTCGATTGGCTGAGCACCCACACGCTCGTTCCGTGGGTTGACTTAGGCATACGAAGTTCATC
191 ---TT-GA---GC---G--CCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATC
* * *** * * *
33290257 CCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATTGGACCAAACT-GAGGGTTGTGGCAA
244 CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACTCGAGGGTTGCGACAG
** * * * *
33290321 CAGGATCGGTAGCAAGTAGGGGAGACC-GAGCCGATCCTCGGCTTGTGCATTCTGCCTCTCCAGT
309 CAGGATCGACAGCACGAAGGGG-GACCAG-GCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGT
** * *
33290385 CGGTTGAGTGCCCAAATGCACGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTA
372 CGGTTGAGTGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTA
* * * * * * *
33290450 AGCCCTAACCGGAATGAGGGTTATGGCAACGGGACCAGCAGCACGCAGTGGGGGACCAGGTCGAT
437 AGCCCTAGCCAG-AGGAGGGTTGTGGCAGCGGGACCAGCAGCACGCAGAGGGGGACCAGGCCGAT
* ** * *
33290515 CC-CTGGCTTGCGCATTATGCCTATTCGACCGGTTGAGTGCCCGCACACTCGTTTCGTTGGTTGA
501 CCTC-GGCTTGCGCATTATGCCTCTTCGACCGACT-AGTGCCCGCACGCTCGTTTCGTGGGTTGA
* * * ** *
33290579 CTTATGCATACGGAGTTCATTCCCAGTCTGAGATC-GAATCGGACCGAAGTTTGTGGCAGCAAGA
564 CTTATGCATACGGAGTTCATTCCCAATCTAAGATCAG-ATCGGACCGAAGGTTGCAGCAGCAGGA
* * *
33290643 TCGACAGCACGCA-GGGAGGACCGGGTCGATCCCCGGCTTGTGCATTCTGCCACTCTGGCT-GGC
628 TCGACAGCACGCAGGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTACCACTCTGGCTCGGC
* * *
33290706 TGAGCG-TTCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
693 TGAGCGCCT-GCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
*** * * * *
33290770 ATACGGAGTTCATTCCCAGTCTAAGATTTAATTGGATCAAGGGTTGTGGTAGCAGGACCCA-CAG
757 ATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGCGGCAGCAGGA-CCAGCAG
* * * * *
33290834 CAGGATCGGTAGCACACAGGGGGAACCGGGCCAATCCCCGGCTTGCGC
821 CAGGATCGATAGCACGCAGGGGGGACCGGGCCGATCCTCGGCTTGCGC
* *
33290882 ATTCTGCCTCTCCGATCGACTGAGAGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGA
1 ATTCTGCCTCTCCGACCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGA
* * * *
33290947 GTTCATTCCATGTCTAAGCCCCAACCGGACTGAGGGTTGTGGTAGTAGGACCGGCAGCGAGATCG
66 GTTCATTCCATGTCTAAGCCCCAGCCGGACTGAGGGTTATGGCAGCAGGACCGGCAGCGAGATCG
* * ** * * ***
33291012 ACAGCACACAGAGGGGGATCGGGCTGATCCTTGGCTTGTGTATTATGCCTCTTTGGCCGGTTGAG
131 ACAGCACGCAGAGGGGGATCGAGCTGATCCCCGGCTTGCGCATTATGCCTCTCCAGCCGGTTGAG
*
33291077 CGCCCGCACGCTCATTTAATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACG
196 CGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACG
*
33291142 GAGTTCATTCCCAGTCTAAGATTGGACTGGACT-GAGGGTTGC-AGCAGCAGGATCGACAGCACG
261 GAGTTCATTCCCAGTCTAAGATCGGACTGGACTCGAGGGTTGCGA-CAGCAGGATCGACAGCACG
* * * * * * *
33291205 CAAAGGGGACCAGCCCGATCC-CTGGCTTGCGCATCCTGCCTCTTCGGCCGGTTGAGTGCCTGTA
325 -AAGGGGGACCAGGCCGATCCTC-GGCTTGCGCATTCTGCCTCTCCGGTCGGTTGAGTGCCCGCA
* * * *
33291269 CGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTTTAAGCCCCAGTCAGACGG
388 CGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCAGA-GG
* * * * * *
33291334 AGGGTTGTGGTAGCGGGACCGGTAGCACGCAGAGGGGGACTAGGTCGATCCTCGGCTTGCACATT
452 AGGGTTGTGGCAGCGGGACCAGCAGCACGCAGAGGGGGACCAGGCCGATCCTCGGCTTGCGCATT
* * * * *
33291399 ATGCCTCTTCGACCGACTCAGCGCCCGTACGCTCATTTTGTGGGTTGACTTATGCATATGGAGTT
517 ATGCCTCTTCGACCGACT-AGTGCCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTT
* * * *
33291464 CATTCCTAATCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCAGGATCGACAGCACGTAGGGGG
581 CATTCCCAATCTAAGATCAGATCGGACCGAAGGTTGCAGCAGCAGGATCGACAGCACGCAGGGGG
* * * * * * * * * * *
33291529 GGATCGGGCCGATCCCCGACTGGCGCATTTTGCCTCT-TCGATCGGTTGAGCGCCTGCAGGA-TC
646 GGACCGGGTCGATCCCCGGCTTGCGCATTCTACCACTCTGGCTCGGCTGAGCGCCTGCA-CACTC
* *
33291592 GTTTCGTGGCTTGGCATAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCA
710 GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCA
33291657 GTCTAAGAT
775 GTCTAAGAT
33291666 TTTGAGCCGC
Statistics
Matches: 2082, Mismatches: 386, Indels: 137
0.80 0.15 0.05
Matches are distributed among these distances:
864 48 0.02
865 364 0.17
866 261 0.13
867 46 0.02
868 369 0.18
869 124 0.06
870 2 0.00
871 1 0.00
872 3 0.00
873 2 0.00
875 1 0.00
876 3 0.00
877 2 0.00
878 1 0.00
879 23 0.01
880 236 0.11
881 336 0.16
882 257 0.12
883 3 0.00
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (868 bp):
ATTCTGCCTCTCCGACCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGA
GTTCATTCCATGTCTAAGCCCCAGCCGGACTGAGGGTTATGGCAGCAGGACCGGCAGCGAGATCG
ACAGCACGCAGAGGGGGATCGAGCTGATCCCCGGCTTGCGCATTATGCCTCTCCAGCCGGTTGAG
CGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACG
GAGTTCATTCCCAGTCTAAGATCGGACTGGACTCGAGGGTTGCGACAGCAGGATCGACAGCACGA
AGGGGGACCAGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGTCGGTTGAGTGCCCGCACGC
CCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCAGAGGAGGG
TTGTGGCAGCGGGACCAGCAGCACGCAGAGGGGGACCAGGCCGATCCTCGGCTTGCGCATTATGC
CTCTTCGACCGACTAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTC
CCAATCTAAGATCAGATCGGACCGAAGGTTGCAGCAGCAGGATCGACAGCACGCAGGGGGGGACC
GGGTCGATCCCCGGCTTGCGCATTCTACCACTCTGGCTCGGCTGAGCGCCTGCACACTCGTTTCG
TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
GATCGGATCGGATCGAGGGTTGCGGCAGCAGGACCAGCAGCAGGATCGATAGCACGCAGGGGGGA
CCGGGCCGATCCTCGGCTTGCGC
Found at i:33291520 original size:159 final size:158
Alignment explanation
Indices: 33291135--33291637 Score: 382
Period size: 159 Copynumber: 3.2 Consensus size: 158
33291125 CCCAGTCTAA
** * *
33291135 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACTGGACTGAGGGTTGCAGCAGCAGGATCGACA
1 GCATACGGAGTTCATT-CCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCAGGATCGACA
* * * * ** * *
33291200 GCACGCA-AAGGGGACCAGCCCGATCCCTGGCTTGCGCATCCTGCCTCTTCGGCCGGTTGAGTGC
65 GCACGCAGAGGGGGACCAGCCCGATCCCTGGCTTGCACATCATGCCTCTTCGACCGACTCAGCGC
* *
33291264 CTGTACGCCCATTTCGTGGGTTGGCTTAG
130 CCGTACGCCCATTTCGTGGGTTGACTTAG
* * ** * * * ** * * * **
33291293 GCATAGGGAGTTCATTCCATGTTTAAGCCCCAG-TCAGACGGAGGGTTGTGGTAGCGGGACCGGT
1 GCATACGGAGTTCATTCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTGCAGCAGCAGGATCGAC
* ** *
33291357 AGCACGCAGAGGGGGACTAGGTCGAT-CCTCGGCTTGCACATTATGCCTCTTCGACCGACTCAGC
64 AGCACGCAGAGGGGGACCAGCCCGATCCCT-GGCTTGCACATCATGCCTCTTCGACCGACTCAGC
* * *
33291421 GCCCGTACGCTCATTTTGTGGGTTGACTTAT
128 GCCCGTACGCCCATTTCGTGGGTTGACTTAG
* *
33291452 GCATATGGAGTTCATTCCTAATCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCC-AGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCAGGATCGACA
* * * * * * * * * ** * ** *
33291517 GCACGTAGGGGGGGATCGGGCCGATCCCCGACTGGCGCATTTTGCCTCTTCGATCGGTTGAGCGC
65 GCACGCAGAGGGGGACCAGCCCGATCCCTGGCTTGCACATCATGCCTCTTCGACCGACTCAGCGC
* * * ** * * * *
33291582 CTGCAGGATCGTTTCGTGGCTTGGCATAG
130 CCGTACGCCCATTTCGTGGGTTGACTTAG
33291611 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCA-GTCTAAG
33291638 CATACGGAGT
Statistics
Matches: 261, Mismatches: 76, Indels: 15
0.74 0.22 0.04
Matches are distributed among these distances:
157 3 0.01
158 56 0.21
159 199 0.76
160 3 0.01
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCAGGATCGACAG
CACGCAGAGGGGGACCAGCCCGATCCCTGGCTTGCACATCATGCCTCTTCGACCGACTCAGCGCC
CGTACGCCCATTTCGTGGGTTGACTTAG
Found at i:33291647 original size:26 final size:26
Alignment explanation
Indices: 33291611--33291663 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
33291601 CTTGGCATAG
33291611 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
33291637 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
33291663 G
1 G
33291664 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:33293377 original size:26 final size:26
Alignment explanation
Indices: 33293341--33293393 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
33293331 GATGACTTAG
33293341 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
*
33293367 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
33293393 G
1 G
33293394 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGTCTAA
Found at i:33293864 original size:157 final size:154
Alignment explanation
Indices: 33293367--33293886 Score: 449
Period size: 158 Copynumber: 3.3 Consensus size: 154
33293357 CCTAGTCTAA
* *
33293367 GCATACGGAGTTCATTCC-TAGTCTAAGATCAGACCGGACCGAGGG-TTGCAACAGCAGGATCGG
1 GCATACGGAGTTCATTCCAT-GTCTAAGATCGGACCGGACCGAGGGTTTGC-A-A-CAGGATCGA
** * * * *
33293430 CAGCACGCAGGGGGGACTGGGTCGATCCCCGGCTTATGCATTTTGCCTCTCTGATCGGCTAAGTG
62 CAGCACGCAGGGGGGACCAGGTCGAT-CCCGGCTTACGCATTATACCTCTCCGATCGGCTAAGTG
* *
33293495 CCCGCACGCCTGTTTCGTGTGTTGGCTTAG
126 CCCGCACGTC-GTTTCGTGGGTTGGCTTAG
* * ** ** * * * * *
33293525 GCATAGGGAGTTCATTCCATGTCCAAGCCCCAACCAGACCGAGGGTTCTGGTAGCGGGACCGACA
1 GCATACGGAGTTCATTCCATGTCTAAGATCGGACCGGACCGAGGGTT-T-GCAACAGGATCGACA
* * * * * * *
33293590 TCACGTAGAGGAGGACCAGGTCGGTCCGCGGCTTGCGCATTATACCTCTCCG-TCAGGCTCAGCG
64 GCACGCAG-GGGGGACCAGGTCGATCC-CGGCTTACGCATTATACCTCTCCGATC-GGCTAAGTG
* * *
33293654 CCCGAAAGCTCATTTCGTGGG--GGACTTAG
126 CCCGCACG-TCGTTTCGTGGGTTGG-CTTAG
* * * * *
33293683 GCATATGGAGTTCATTCCCA-GTCTAAGATTGGATCGGACCGAGGGTTATGCAATAGGTTCGACA
1 GCATACGGAGTTCATT-CCATGTCTAAGATCGGACCGGACCGAGGGTT-TGCAACAGGATCGACA
* * * *
33293747 GCATGCAGGGGGGACCAGGCCGATCCCTGGCTTACGCATTCTACCTCTCCGATCGGCTGAGTGCC
64 GCACGCAGGGGGGACCAGGTCGATCCC-GGCTTACGCATTATACCTCTCCGATCGGCTAAGTGCC
* *
33293812 TGCACGTTCGTTTCATGGGTTGGCTTAG
128 CGCACG-TCGTTTCGTGGGTTGGCTTAG
* *
33293840 GCATACGGAGTTCATTCCATGTCTAAGATCGGACCGAACCGAAGGTT
1 GCATACGGAGTTCATTCCATGTCTAAGATCGGACCGGACCGAGGGTT
33293887 GCAGTAGCAG
Statistics
Matches: 280, Mismatches: 67, Indels: 31
0.74 0.18 0.08
Matches are distributed among these distances:
155 1 0.00
156 61 0.22
157 61 0.22
158 96 0.34
159 57 0.20
160 3 0.01
161 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (154 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCGGACCGGACCGAGGGTTTGCAACAGGATCGACAGC
ACGCAGGGGGGACCAGGTCGATCCCGGCTTACGCATTATACCTCTCCGATCGGCTAAGTGCCCGC
ACGTCGTTTCGTGGGTTGGCTTAG
Found at i:33293906 original size:157 final size:156
Alignment explanation
Indices: 33293367--33293951 Score: 468
Period size: 157 Copynumber: 3.7 Consensus size: 156
33293357 CCTAGTCTAA
* * * *
33293367 GCATACGGAGTTCATTCC-TAGTCTAAGATCAGACCGGACCGAGGGTTGCAACAGCAGGATCGGC
1 GCATACGGAGTTCATTCCAT-GTCTAAGATCGGACCGAACCGAGGGTTGCAATAGCA-GATCGAC
** * * * * *
33293431 AGCACGCAGGGGGGACTGGGTCGATCCCCGGCTTATGCATTTTGCCTCTCTGATCGGCTAAGTGC
64 AGCACGCAGGGGGGACCAGGCCGATCCCCGGCTTACGCATTCTACCTCTCCGATCGGCTAAGTGC
* *
33293496 CCGCACGCCTGTTTCGTGTGTTGGCTTAG
129 CCGCACGTC-GTTTCGTGGGTTGGCTTAG
* * ** ** ** * *
33293525 GCATAGGGAGTTCATTCCATGTCCAAGCCCCAACC-AGACCGAGGGTT-CTGGTAGCGGGACCGA
1 GCATACGGAGTTCATTCCATGTCTAAGATCGGACCGA-ACCGAGGGTTGC-AATAGC-AGATCGA
* * * * * * * * *
33293588 CATCACGTAGAGGAGGACCAGGTCGGTCCGCGGCTTGCGCATTATACCTCTCCG-TCAGGCTCAG
63 CAGCACGCAG-GGGGGACCAGGCCGATCCCCGGCTTACGCATTCTACCTCTCCGATC-GGCTAAG
* * * *
33293652 CGCCCGAAAGCTCATTTCGTGGG--GGACTTAG
126 TGCCCGCACG-TCGTTTCGTGGGTTGG-CTTAG
* * * * *
33293683 GCATATGGAGTTCATTCCCA-GTCTAAGATTGGATCGGACCGAGGGTTATGCAATAG--GTTCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGATCGGACCGAACCGAGGG-T-TGCAATAGCAGATCGA
* * *
33293745 CAGCATGCAGGGGGGACCAGGCCGATCCCTGGCTTACGCATTCTACCTCTCCGATCGGCTGAGTG
63 CAGCACGCAGGGGGGACCAGGCCGATCCCCGGCTTACGCATTCTACCTCTCCGATCGGCTAAGTG
* *
33293810 CCTGCACGTTCGTTTCATGGGTTGGCTTAG
128 CCCGCACG-TCGTTTCGTGGGTTGGCTTAG
* * * *
33293840 GCATACGGAGTTCATTCCATGTCTAAGATCGGACCGAACCGAAGGTTGCAGTAGCAGATTGGCAG
1 GCATACGGAGTTCATTCCATGTCTAAGATCGGACCGAACCGAGGGTTGCAATAGCAGATCGACAG
* * * * * * *
33293905 CACACAGGGGGGATCGGGCCGACCCCCGACTTGCGCATTCTGCCTCT
66 CACGCAGGGGGGACCAGGCCGATCCCCGGCTTACGCATTCTACCTCT
33293952 TCGGCCGACC
Statistics
Matches: 327, Mismatches: 81, Indels: 39
0.73 0.18 0.09
Matches are distributed among these distances:
155 7 0.02
156 62 0.19
157 101 0.31
158 92 0.28
159 59 0.18
160 5 0.02
161 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCGGACCGAACCGAGGGTTGCAATAGCAGATCGACAG
CACGCAGGGGGGACCAGGCCGATCCCCGGCTTACGCATTCTACCTCTCCGATCGGCTAAGTGCCC
GCACGTCGTTTCGTGGGTTGGCTTAG
Found at i:33295993 original size:26 final size:26
Alignment explanation
Indices: 33295953--33296049 Score: 135
Period size: 26 Copynumber: 3.7 Consensus size: 26
33295943 AACCACAAAA
33295953 AGTTCATCC-CTAGTCTAAGCATACAG
1 AGTTCATCCTC-AGTCTAAGCATACAG
* *
33295979 AGTTCATCCTCAGTCTAAGCCTACGG
1 AGTTCATCCTCAGTCTAAGCATACAG
*
33296005 AGTTCATCCCCAGTCTAAGCATACAG
1 AGTTCATCCTCAGTCTAAGCATACAG
33296031 AGTTCATTCCT-AGTCTAAG
1 AGTTCA-TCCTCAGTCTAAG
33296050 ATAGAACCAG
Statistics
Matches: 63, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
26 59 0.94
27 4 0.06
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.28
Consensus pattern (26 bp):
AGTTCATCCTCAGTCTAAGCATACAG
Found at i:33296372 original size:26 final size:26
Alignment explanation
Indices: 33296342--33296394 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33296332 ATTGGCTTAG
*
33296342 GCATACGGAGTTCATTC-CATGTCTAA
1 GCATACGAAGTTCATTCTCA-GTCTAA
33296368 GCATACGAAGTTCATTCTCAGTCTAA
1 GCATACGAAGTTCATTCTCAGTCTAA
33296394 G
1 G
33296395 ATCAGACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCTCAGTCTAA
Found at i:33297653 original size:25 final size:26
Alignment explanation
Indices: 33297625--33297676 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
33297615 TTTGGCTTAG
**
33297625 GCATACGGAGTTTGTT-CCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
33297650 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
33297676 G
1 G
33297677 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 13 0.57
26 10 0.43
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:33297851 original size:341 final size:341
Alignment explanation
Indices: 33297222--33298176 Score: 861
Period size: 341 Copynumber: 2.8 Consensus size: 341
33297212 ACCACCCATT
* * * * ** ** * *
33297222 CGATCCTCGGCTTGC-CATCCTGCCTCTCCGACCGACTGAGTGCCCGCATGCTCGTTTCGTGGGT
1 CGATCCCCAGCTTGCGCATTCTGCCTCTCGGACCGACTGAGCACCCGCACACTCATTTCATGGGT
*
33297286 TGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAAGCATATGGAGTTCATT--C---C------C
66 TGGCTTAGGCATACGGAGTTCATCCCCA-GTCTAAGCATATGGAGTTCATTCACAGTCTAAGATC
* * * * * * * * * * * *
33297339 -AACTGGATCGAGGGTTGTGGCAGCGGGATCGGCATCACGCAGAGGGGGCCCG-AGCTGATCCCC
130 GAACCGGACCGAAGGTTGCGACAGCAGGATCGACAACACACA-AGGGGGACCGAATC-GATCCCT
* * ** * * ** * * * *
33297402 GACTTGCGTATTATGCCTCTCCGGTCGGCTCAGTGCCTACACGCTCGTTTCGTGGGTTGGCTTAG
193 GACTTGCGCATTCTGCCTCTCCGACCGGCTGAGAGCCCGCACACCCATTTCGTGGGTTAGCTTAG
* * * * * * *
33297467 GCATACGGACTTAATTCCCAGTCTAAGATTGGATCGAACCGAGGGTTGCGAG-AGTAGGATTGAT
258 GCATACGGAGTTCATT-CCAGTCTAAGATCGAATCGAACCGAGGGTTACG-GTAGTAAGATTGAC
* ***
33297531 AGA-ACGTAAGAGGGACTGGGC
321 A-ACACGCAAGAGGGACCAAGC
* * * ** * * * *
33297552 CGATCTCCGGCTTGTGCATTCTGCCTCTCGGGTCGACTGAGCGCCCGTACACTCGTTTCATGGTT
1 CGATCCCCAGCTTGCGCATTCTGCCTCTCGGACCGACTGAGCACCCGCACACTCATTTCATGGGT
** * *
33297617 TGGCTTAGGCATACGGAGTTTGT-TCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCG
66 TGGCTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCACAGTCTAAGATCG
* *
33297681 GACCGGACCGAAGGTTGCGACAGCAGGATCGACAACACACAAGGGGGACCGAATCGATCCCTGGC
131 AACCGGACCGAAGGTTGCGACAGCAGGATCGACAACACACAAGGGGGACCGAATCGATCCCTGAC
*
33297746 TTGCGCATT-TCGCCTCTCCGATCGGCTGAGAGCCCGCACACCCATTTCGTGGGTTAGCTTAGGC
196 TTGCGCATTCT-GCCTCTCCGACCGGCTGAGAGCCCGCACACCCATTTCGTGGGTTAGCTTAGGC
*
33297810 ATATGGAGTTCATTCCTAGTCTAAGATCGAATC-AGACCGAGGGTTACGGTAGTAAGATTGACAA
260 ATACGGAGTTCATTCC-AGTCTAAGATCGAATCGA-ACCGAGGGTTACGGTAGTAAGATTGACAA
* *
33297874 CACGCAGGGGGGACCAAGC
323 CACGCAAGAGGGACCAAGC
* * * * *
33297893 CGATCCCCAGCTTGCGTATTCTGCCTCTCTGACCGACTGAGCACCTGCACGCTCATTTCGTGGGT
1 CGATCCCCAGCTTGCGCATTCTGCCTCTCGGACCGACTGAGCACCCGCACACTCATTTCATGGGT
* *
33297958 TGGCTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCACAGTTTACGATCG
66 TGGCTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCACAGTCTAAGATCG
* * * * * * * ** * **
33298023 AATCGGACTGAGGGTTGCGGCAGTAGGATCGGCAGCACGTAAGGGGGATCGGGTCGATCCCTGAC
131 AACCGGACCGAAGGTTGCGACAGCAGGATCGACAACACACAAGGGGGACCGAATCGATCCCTGAC
* * * * **
33298088 TTGTGCATTCTGCCTCTTCGACCGGTTGAGGGCCCGCACACCCATTTTATGGGTTAGCTTAGGCA
196 TTGCGCATTCTGCCTCTCCGACCGGCTGAGAGCCCGCACACCCATTTCGTGGGTTAGCTTAGGCA
*
33298153 TAGGGAGTTCATTCCATGTCTAAG
261 TACGGAGTTCATTCCA-GTCTAAG
33298177 CCCTAGCCGA
Statistics
Matches: 508, Mismatches: 95, Indels: 32
0.80 0.15 0.05
Matches are distributed among these distances:
330 34 0.07
331 64 0.13
332 1 0.00
335 1 0.00
340 6 0.01
341 203 0.40
342 198 0.39
343 1 0.00
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (341 bp):
CGATCCCCAGCTTGCGCATTCTGCCTCTCGGACCGACTGAGCACCCGCACACTCATTTCATGGGT
TGGCTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCACAGTCTAAGATCG
AACCGGACCGAAGGTTGCGACAGCAGGATCGACAACACACAAGGGGGACCGAATCGATCCCTGAC
TTGCGCATTCTGCCTCTCCGACCGGCTGAGAGCCCGCACACCCATTTCGTGGGTTAGCTTAGGCA
TACGGAGTTCATTCCAGTCTAAGATCGAATCGAACCGAGGGTTACGGTAGTAAGATTGACAACAC
GCAAGAGGGACCAAGC
Found at i:33297950 original size:158 final size:158
Alignment explanation
Indices: 33297650--33297992 Score: 404
Period size: 158 Copynumber: 2.2 Consensus size: 158
33297640 TCCAGTCTAA
* * * *
33297650 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAAGGTTGCGACAGCAGGATCGACA
1 GCATATGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAAGGTTACGACAGCAAGATCGACA
* ** * *
33297715 ACACACAAGGGGGACCGAATCGATCCCTGGCTTGCGCATTTCGCCTCTCCGATCGGCTGAGAGCC
66 ACACACAAGGGGGACCGAACCGATCCCCAGCTTGCGCATTTCGCCTCTCCGACCGACTGAGAGCC
33297780 CGCACACCCATTTCGTGGGTTAGCTTAG
131 CGCACACCCATTTCGTGGGTTAGCTTAG
* * * ** * *
33297808 GCATATGGAGTTCATTCCTAGTCTAAGATCGAATCAGACCGAGGGTTACGGTAGTAAGATTGACA
1 GCATATGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAAGGTTACGACAGCAAGATCGACA
* * * *
33297873 ACACGCAGGGGGGACC-AAGCCGATCCCCAGCTTGCGTA-TTCTGCCTCTCTGACCGACTGAGCA
66 ACACACAAGGGGGACCGAA-CCGATCCCCAGCTTGCGCATTTC-GCCTCTCCGACCGACTGAG-A
* * * *
33297936 -CCTGCACGCTCATTTCGTGGGTTGGCTTAG
128 GCCCGCACACCCATTTCGTGGGTTAGCTTAG
* *
33297966 GCATACGGAGTTCATCCCCAGTCTAAG
1 GCATATGGAGTTCATTCCCAGTCTAAG
33297993 CATATGGAGT
Statistics
Matches: 155, Mismatches: 27, Indels: 6
0.82 0.14 0.03
Matches are distributed among these distances:
157 5 0.03
158 149 0.96
159 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.22
Consensus pattern (158 bp):
GCATATGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAAGGTTACGACAGCAAGATCGACA
ACACACAAGGGGGACCGAACCGATCCCCAGCTTGCGCATTTCGCCTCTCCGACCGACTGAGAGCC
CGCACACCCATTTCGTGGGTTAGCTTAG
Found at i:33298196 original size:342 final size:341
Alignment explanation
Indices: 33297550--33298176 Score: 817
Period size: 342 Copynumber: 1.8 Consensus size: 341
33297540 GAGGGACTGG
* * * ** * * *
33297550 GCCGATCTCCGGCTTGTGCATTCTGCCTCTCGGGTCGACTGAGCGCCCGTACACTCGTTTCATGG
1 GCCGATCCCCAGCTTGCGCATTCTGCCTCTCGGACCGACTGAGCACCCGCACACTCATTTCATGG
* ** * *
33297615 TTTGGCTTAGGCATACGGAGTTTGTTCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATC
66 GTTGGCTTAGGCATACGGAGTTCATCCCAGTCTAAGCATATGGAGTTCATTCACAGTCTAAGATC
* *
33297680 GGACCGGACCGAAGGTTGCGACAGCAGGATCGACAACACACAAGGGGGACCGAATCGATCCCTGG
131 GAACCGGACCGAAGGTTGCGACAGCAGGATCGACAACACACAAGGGGGACCGAATCGATCCCTGA
* *
33297745 CTTGCGCATTTCGCCTCTCCGATCGGCTGAGAGCCCGCACACCCATTTCGTGGGTTAGCTTAGGC
196 CTTGCGCATTTCGCCTCTCCGACCGGCTGAGAGCCCGCACACCCATTTCATGGGTTAGCTTAGGC
* * *
33297810 ATATGGAGTTCATTCCTAGTCTAAGATCGAATCAGACCGAGGGTTACGGTAGTAAGATTGACAAC
261 ATAGGGAGTTCATTCCTAGTCTAAGACCGAACCAGACCGAGGGTTACGGTAGTAAGATTGACAAC
33297875 ACGCAGGGGGGACCAA
326 ACGCAGGGGGGACCAA
* * * * *
33297891 GCCGATCCCCAGCTTGCGTATTCTGCCTCTCTGACCGACTGAGCACCTGCACGCTCATTTCGTGG
1 GCCGATCCCCAGCTTGCGCATTCTGCCTCTCGGACCGACTGAGCACCCGCACACTCATTTCATGG
* *
33297956 GTTGGCTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCACAGTTTACGAT
66 GTTGGCTTAGGCATACGGAGTTCAT-CCCAGTCTAAGCATATGGAGTTCATTCACAGTCTAAGAT
* * * * * * * ** * **
33298021 CGAATCGGACTGAGGGTTGCGGCAGTAGGATCGGCAGCACGTAAGGGGGATCGGGTCGATCCCTG
130 CGAACCGGACCGAAGGTTGCGACAGCAGGATCGACAACACACAAGGGGGACCGAATCGATCCCTG
* * * * *
33298086 ACTTGTGCA-TTCTGCCTCTTCGACCGGTTGAGGGCCCGCACACCCATTTTATGGGTTAGCTTAG
195 ACTTGCGCATTTC-GCCTCTCCGACCGGCTGAGAGCCCGCACACCCATTTCATGGGTTAGCTTAG
33298150 GCATAGGGAGTTCATTCC-ATGTCTAAG
259 GCATAGGGAGTTCATTCCTA-GTCTAAG
33298177 CCCTAGCCGA
Statistics
Matches: 241, Mismatches: 42, Indels: 5
0.84 0.15 0.02
Matches are distributed among these distances:
341 78 0.32
342 163 0.68
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.25
Consensus pattern (341 bp):
GCCGATCCCCAGCTTGCGCATTCTGCCTCTCGGACCGACTGAGCACCCGCACACTCATTTCATGG
GTTGGCTTAGGCATACGGAGTTCATCCCAGTCTAAGCATATGGAGTTCATTCACAGTCTAAGATC
GAACCGGACCGAAGGTTGCGACAGCAGGATCGACAACACACAAGGGGGACCGAATCGATCCCTGA
CTTGCGCATTTCGCCTCTCCGACCGGCTGAGAGCCCGCACACCCATTTCATGGGTTAGCTTAGGC
ATAGGGAGTTCATTCCTAGTCTAAGACCGAACCAGACCGAGGGTTACGGTAGTAAGATTGACAAC
ACGCAGGGGGGACCAA
Found at i:33299161 original size:26 final size:26
Alignment explanation
Indices: 33299125--33299177 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
33299115 GTTGACTTAG
33299125 GCATACAGAGTTCA-TCCTCAGTCTAA
1 GCATACAGAGTTCATTCCT-AGTCTAA
33299151 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
33299177 G
1 G
33299178 ATCGGATCGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:33299663 original size:26 final size:26
Alignment explanation
Indices: 33299626--33299678 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
33299616 GTTGGCTTAG
33299626 GCATACGAAGTTCATT-CCATGTTTAA
1 GCATACGAAGTTCATTCCCA-GTTTAA
33299652 GCATAC-AGAGTTCATTCCCAGTTTAA
1 GCATACGA-AGTTCATTCCCAGTTTAA
33299678 G
1 G
33299679 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 1 0.04
26 21 0.84
27 3 0.12
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.32
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTTTAA
Found at i:33300022 original size:26 final size:26
Alignment explanation
Indices: 33299992--33300044 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
33299982 GTTGACTTAG
33299992 GCATATGGAATTCATCCCCAGTCTAA
1 GCATATGGAATTCATCCCCAGTCTAA
* * *
33300018 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATATGGAATTCATCCCCAGTCTAA
33300044 G
1 G
33300045 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATATGGAATTCATCCCCAGTCTAA
Found at i:33300898 original size:26 final size:26
Alignment explanation
Indices: 33300869--33300921 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
33300859 GTTGACTTAG
33300869 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
33300895 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
33300921 G
1 G
33300922 ATTGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:33301228 original size:882 final size:874
Alignment explanation
Indices: 33298889--33302291 Score: 3410
Period size: 867 Copynumber: 3.9 Consensus size: 874
33298879 ACAAAAATTT
** * * * * * *
33298889 TGCCTCTCCGACCGGTTGAGCGCCCGCACGC-CTTTTTTGTGGGTTGACTTAGGCATACGTAGTT
1 TGCCTCTCCGACCGACTGAGAGCCCGCATGCTC-ATTTCGTGGGTTGGCTTAGGCATACGGAGTT
* ** * * *
33298953 CATTCCATGTCTAAGCCCC-AGTCAAACCGAGGGTTGTGGCAGTAAGACCGACAACGAGATCGGC
65 CATTCCATGTCTAAGCCCCAACTCGGACCGAGGGTTGTGGCAGCAAGACCGACAGCGAGATCGAC
** ** * * * *
33299017 AGCACATAGAGGGTCACCGGGTTGATCCCCGACTTGCGCATTATGCCTCTCCGATCGGCCTCTCC
130 AGCACGCAGAGGGGGATCGGGCTGATCCCCGGCTTGCGCATTATGCCTCTCCGA----CCGC-CC
* ** * * * * *
33299082 GACTGGCTGAGTGCCCACACGCTCTTTTCTTGGGTTGACTTAGGCATACAGAGTTCATCCTCAGT
190 G-GT-GCTGACCGCCCACACGCTCGTTTCATGCGTTGACTTAGGCATACGGAGTTCATCCCCAGT
* * * * * * *
33299147 CTAAGCATACAGAGTTCATTCCTAGTCTAAGATCGGATCGAATCGTGGGTTGCGACAGCAGGATT
253 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCAGGATC
** * * * * * * * * *
33299212 GGTAGCACACAGGGGGGACCAGGCCAATCCCCGATTTCACATTCTGCCTCTCCAGCCGACTGAGC
318 GACAGCACACAAGGGGGACCGGGCCGATCCCGGCTTGCGCATTCTGCCTCTCTAGCCGACTGAGT
* * * * * * * *
33299277 ACCCGCACGTC-TGTTTCATGGGTTGGCATAGGCATGGGGAATTCATTCCATGTCTAAGCCCTAG
383 GCCCGCACG-CACGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAA
* * * *
33299341 CCAGAGTGAGAGTTGTGGTAGCGGGACCGACAGCACGCAGAGGGGGACCGGGTCGATCCCTGGCT
447 CCAGATTGAGGGTTGTGGCAGCGGGACCGGCAGCACGCAGAGGGGGACCGGGTCGATCCCTGGCT
* * * * * * *
33299406 TGCGCATTACGCCTCTCCGA-CTGGCT-AAGTGCCTGCACTCTCGTTCCATGGGTTGACTTAGGC
512 TGCGCATTATGCCTCTCCGATC-GGCTCAA-CGCCCGCACGCTCATTTCGTGGGTTGACTTAGGC
* * * * * * * *
33299469 ATACAGAGTTCATTCCCAGTATAAGATCAAACCGGATCGAGGGTTGTGACAGCAGGATCGACAGC
575 ATACAGAGTTCATTCCCAATCTAAGATCAGACCGAACCGAGGGTTGCGACAACAAGATCGACAGC
* * * * * * * * *
33299534 ATGCAGGGGGGGACCTGGCTGGTCCCCGGCTTGTGCATTCTGCCACTCCGATCGACTGAGAGCCC
640 ACGTAGGGGGGGACCAGGCCGATCCCCGACTTGTGCATTCTGCCTCTCCGACCGACTGAGCGCCC
* * * *
33299599 GCACGCTCATTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTTTAAGCATACAGAGTT
705 GCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTT
* * * * *
33299664 CATTCCCAGTTTAAGATTGGATCGGACCGAGGGTTGCGGCAACAGGACCAGCAGCAAGATTGACA
770 CATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCAGGACCAGCAGCAGGATTGGCA
* * * *
33299729 GCACGCTGGGGTGGACTGGTCGATCCTCGGCTTACGCATTC
835 GCACGCAGGGGGGGACAGGTCGATCCT-GGCTTGCGCATTC
* * ** * * *
33299770 CGCCTCTCCGGCCGGTTGAGCA-CCCGCACGCTCATTCCCTGGGTTGGCTTAGGCATACGGAGTT
1 TGCCTCTCCGACCGACTGAG-AGCCCGCATGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTT
* * *
33299834 CATTCCATGTCTAAGCCCTAGC-CGGACCGAGGGTTGCGGCAGCAAGACCGACAGCGAGATCGAC
65 CATTCCATGTCTAAGCCCCAACTCGGACCGAGGGTTGTGGCAGCAAGACCGACAGCGAGATCGAC
* * * * *
33299898 AGCACGTAGA-GGGGATCGGGCTTATCCTCGGCTTGCGCATTATGCCTCTCCAACCGACCGAGTG
130 AGCACGCAGAGGGGGATCGGGCTGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGCCCG-GTG
* * * *
33299962 C---CCG----CATGCTCGTTTCATGGGTTGACTTAGGCATATGGAATTCATCCCCAGTCTAAGC
194 CTGACCGCCCACACGCTCGTTTCATGCGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
* * * * *
33300020 ATATGGAGTTCATTCCTAGTCTAAGATCGGACTGGACCGAGGGTTGCGATAGTAGGATCGACAGC
259 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCAGGATCGACAGC
* * * * * *
33300085 ACACAAGGGGGATCGGGCCGATCCTTGGCTTGTGCATTCTGCCTC-CTCGGTCGGCTGAGTGCCC
324 ACACAAGGGGGACCGGGCCGATCC-CGGCTTGCGCATTCTGCCTCTCT-AGCCGACTGAGTGCCC
33300149 GCACG--C---TCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG-CCCAAGCCAG
387 GCACGCACGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAA-CCAG
** ** * * * * *
33300208 ATTGAGGGTTGTCACAGTAGGATCGGTAGCACGCAGAAGGGGATCGGGTCGATCCCTGGCTTACG
451 ATTGAGGGTTGTGGCAGCGGGACCGGCAGCACGCAGAGGGGGACCGGGTCGATCCCTGGCTTGCG
* * * * *
33300273 CATTATGCCTCTCCGATCGGCTCAGCTCCCGCATGCTCGTTTTGTGGGTTGAC-TAGGGCATACA
516 CATTATGCCTCTCCGATCGGCTCAACGCCCGCACGCTCATTTCGTGGGTTGACTTA-GGCATACA
* * *
33300337 GAGTTCATTCCCAATCTAAGATCAGACCGAACCGAGGGTTGCGACAACAGGATCAACAGTACGTA
580 GAGTTCATTCCCAATCTAAGATCAGACCGAACCGAGGGTTGCGACAACAAGATCGACAGCACGTA
* * * *
33300402 -GGGGGGATCAGGCC-AGTCCCCGGCTTGCGCATTCTACCTCTCCGACCGACTGAGCGCCCAG-A
645 GGGGGGGACCAGGCCGA-TCCCCGACTTGTGCATTCTGCCTCTCCGACCGACTGAGCGCCC-GCA
* * *
33300464 CGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCGATGTCTAAGCATACCGAGTTCAT
708 CGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCAT
* * * * * *
33300529 TCCCAATCTAAGATC-GAACTGGATCGAGGGTTGCGGCAGCAAGACTAGCAGCAGGATTGGTAGC
773 TCCCAGTCTAAGATCGGATC-GGACCGAGGGTTGCGGCAGCAGGACCAGCAGCAGGATTGGCAGC
* *
33300593 ACACAGGGGGGGATCGGGTCGATCCTAGGCTTGCGCATTC
837 ACGCAGGGGGGGA-CAGGTCGATCCT-GGCTTGCGCATTC
* * * * * *
33300633 TACCTCTCCGACCGACTGAGTGCCCGGATGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAATTC
1 TGCCTCTCCGACCGACTGAGAGCCCGCATGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTC
* * * * * ** * * *
33300698 AATCCACGTCTAAGCCCCAACT-GGATCGAAGGTTGTGGCAGCAAGATCGGTAGCGGGATTGGCA
66 ATTCCATGTCTAAGCCCCAACTCGGACCGAGGGTTGTGGCAGCAAGACCGACAGCGAGATCGACA
* *
33300762 GCACGCAGAGGGGGATCGGGCTGATCCCCGGCTTACGCATTATGCCTCTCTGACCAGCCTTTTCG
131 GCACGCAGAGGGGGATCGGGCTGATCCCCGGCTTGCGCATTATGCCTCTCCGACC-GCC----CG
* *
33300827 GTTGGCTGACCGCCCACACGCTCGTTCCGTGCGTTGACTTAGGCATACGGAGTTCATCCCCAGTC
191 G-T-GCTGACCGCCCACACGCTCGTTTCATGCGTTGACTTAGGCATACGGAGTTCATCCCCAGTC
* * * * *
33300892 TAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACTGAGGGTTGTGGCAACAGGATCG
254 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCAGGATCG
** * * * * * * *
33300957 GTAGCACGCAGGGGGGACCGGGCCGATCCTCAGCTTGCGTATTCTGCCTCTCTAGTCAACAGAGT
319 ACAGCACACAAGGGGGACCGGGCCGATCC-CGGCTTGCGCATTCTGCCTCTCTAGCCGACTGAGT
*
33301022 GCCCGAACGCACGTTTCGTGGGTT-GCTTGAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAA
383 GCCCGCACGCACGTTTCGTGGGTTGGCTT-AGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAA
** * * * *
33301086 CC-GAACCGAGGGTTATGGCAGCGGGACCGGCAGCATGCAGTGGGGGACCGGGTCGATCCCTAGC
447 CCAG-ATTGAGGGTTGTGGCAGCGGGACCGGCAGCACGCAGAGGGGGACCGGGTCGATCCCTGGC
* * * * *
33301150 TTGCGCATTATGCCTCTTCGATCGGTTCAACACCCGCACACTCATTTCGTGGGTTGACTTATGCA
511 TTGCGCATTATGCCTCTCCGATCGGCTCAACGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCA
** * * * * *
33301215 TATGGAGTTCATTCCCAATCTGAGAT-TGAATCGGACCGAAGGTTGC-AGCAACAAGATCGACAG
576 TACAGAGTTCATTCCCAATCTAAGATCAG-ACCGAACCGAGGGTTGCGA-CAACAAGATCGACAG
* * * * **
33301278 CACGTA-GGGGGGACCAGGCCGATCCCTGACTTGTGCATTCTGCCTCTCCGGCTGGCTGAGCGTT
639 CACGTAGGGGGGGACCAGGCCGATCCCCGACTTGTGCATTCTGCCTCTCCGACCGACTGAGCGCC
*
33301342 CGCACGCTCGTTTCGTGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGT
704 CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGT
* *
33301407 TCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGTAGCAGGACCAGCAGCAGGATCGGC
769 TCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCAGGACCAGCAGCAGGATTGGC
* * * * * * *
33301472 AGCATGTA-AGAGGAACCAAGTTGATCCCTGGCTTGCGCATTC
834 AGCACGCAGGGGGGGA-CAGGTCGAT-CCTGGCTTGCGCATTC
* * * * *
33301514 TGCCTCTCCGATCGACTGAGAGCCCGTATGCTCATTTCATGGGTTGGCTTAGGCACATGGAGTTC
1 TGCCTCTCCGACCGACTGAGAGCCCGCATGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTC
* * * * * *
33301579 ATTCCATGTCTAAGCCCCAA-TCGGACCGAGGGTTGTGGTAGTAGGACTGGCAGCGGGATCGACA
66 ATTCCATGTCTAAGCCCCAACTCGGACCGAGGGTTGTGGCAGCAAGACCGACAGCGAGATCGACA
* * * *
33301643 GCATGCAGAGAGGGATCGGGCTGATCCCCGGTTTGCGCATTATGCCTCTCTG---G-CCGGT--T
131 GCACGCAGAGGGGGATCGGGCTGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGCCCGGTGCT
* * * *
33301702 GAGCGCCCGCACGCTCGTTTCATGCATTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCAT
196 GACCGCCCACACGCTCGTTTCATGCGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCAT
** *
33301767 ACGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGA-GGTTGC-AGTAGCAGGATCGACAGCA
261 ACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGA-CAGCAGGATCGACAGCA
* * **
33301830 CGCAAGGGGGACC-GGCCTGATCCCTGGCTTGCGCATTCTGCCTCTC-CGACCGGTTGAGTGCCC
325 CACAAGGGGGACCGGGCC-GATCCC-GGCTTGCGCATTCTGCCTCTCTAG-CCGACTGAGTGCCC
* * * ** *
33301893 GCACGCCCATTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGA
387 GCACGCACGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCAGA
* * * ** *
33301958 TGGGGGGTTGTGGCAGCGGGACCGGTAGCACGCAGAGGGGGACTAGGTCGAT-CCTCGGCTTGCA
452 TTGAGGGTTGTGGCAGCGGGACCGGCAGCACGCAGAGGGGGACCGGGTCGATCCCT-GGCTTGCG
* * * * * * **
33302022 CATTATGCCTCTTCGACCGGTTCAGCGCCCGCATGCTCATTTCGTGGGTTGACTTATGCATATGG
516 CATTATGCCTCTCCGATCGGCTCAACGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAG
* * * ** * *
33302087 AGTTCATTCCCAATCTAAGATCGGATC-AGA-CTAGGGTTATGATAGCAAGATCGACAGCACGTA
581 AGTTCATTCCCAATCTAAGATCAGACCGA-ACCGAGGGTTGCGACAACAAGATCGACAGCACGTA
* * ** * * ** ** * * *
33302150 GGGGGGGATCGGGCCGATCTTCGACTGGGGCATTCTGCCTCTCCGTTCGGTTGAGTGCCCGTAAG
645 GGGGGGGACCAGGCCGATCCCCGACTTGTGCATTCTGCCTCTCCGACCGACTGAGCGCCCGCACG
* * *
33302215 ATCGTTTCGTGGCTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATGGAGTTCATTC
710 CTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTC
33302280 CCAGTCTAAGAT
775 CCAGTCTAAGAT
33302292 TTTGAGCCAC
Statistics
Matches: 2093, Mismatches: 371, Indels: 130
0.81 0.14 0.05
Matches are distributed among these distances:
861 3 0.00
862 173 0.08
863 329 0.16
864 42 0.02
865 2 0.00
866 34 0.02
867 491 0.23
868 131 0.06
869 3 0.00
870 2 0.00
871 2 0.00
872 3 0.00
873 3 0.00
874 2 0.00
875 5 0.00
876 3 0.00
877 156 0.07
878 2 0.00
879 1 0.00
880 36 0.02
881 299 0.14
882 360 0.17
883 11 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (874 bp):
TGCCTCTCCGACCGACTGAGAGCCCGCATGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTC
ATTCCATGTCTAAGCCCCAACTCGGACCGAGGGTTGTGGCAGCAAGACCGACAGCGAGATCGACA
GCACGCAGAGGGGGATCGGGCTGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGCCCGGTGCT
GACCGCCCACACGCTCGTTTCATGCGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCAT
ACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCAGGATCGACAGCAC
ACAAGGGGGACCGGGCCGATCCCGGCTTGCGCATTCTGCCTCTCTAGCCGACTGAGTGCCCGCAC
GCACGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCAGATTGA
GGGTTGTGGCAGCGGGACCGGCAGCACGCAGAGGGGGACCGGGTCGATCCCTGGCTTGCGCATTA
TGCCTCTCCGATCGGCTCAACGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTC
ATTCCCAATCTAAGATCAGACCGAACCGAGGGTTGCGACAACAAGATCGACAGCACGTAGGGGGG
GACCAGGCCGATCCCCGACTTGTGCATTCTGCCTCTCCGACCGACTGAGCGCCCGCACGCTCGTT
TCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTC
TAAGATCGGATCGGACCGAGGGTTGCGGCAGCAGGACCAGCAGCAGGATTGGCAGCACGCAGGGG
GGGACAGGTCGATCCTGGCTTGCGCATTC
Found at i:33301406 original size:26 final size:26
Alignment explanation
Indices: 33301370--33301422 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
33301360 GTTAGCTTAG
33301370 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
33301396 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
33301422 G
1 G
33301423 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:33301751 original size:171 final size:169
Alignment explanation
Indices: 33301396--33301764 Score: 387
Period size: 171 Copynumber: 2.2 Consensus size: 169
33301386 CCATGTCTAA
** **
33301396 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGTAGCAGGACCAGCA
1 GCATACGGAGTTCATT-CCAGTCTAAGCCCCAATCGGACCGAGGGTTGCGGTAGCAGGACCAGCA
* * * * * *
33301461 GCAGGATCGGCAGCATGTAAGAGGAACCAAGTTGATCCCTGGCTTGCGCATTCTGCCTCTCCGAT
65 GCAGGATCGACAGCATGCAAGAGGAACCAAGCTGATCCCCGGCTTGCGCATTATGCCTCTCCGAC
* * ** *
33301526 CGACTGAGAGCCCGTATGCTCATTTCATGGGTTGGCTTAG
130 CGACTGAGAGCCCGCACGCTCATTTCATGCATTGACTTAG
* * * * **
33301566 GCACATGGAGTTCATTCCATGTCTAAGCCCCAATCGGACCGAGGGTTGTGGTAGTAGGACTGGCA
1 GCATACGGAGTTCATTCCA-GTCTAAGCCCCAATCGGACCGAGGGTTGCGGTAGCAGGACCAGCA
* * * ** * * *
33301631 GCGGGATCGACAGCATGCAGAGAGGGATCGGGCTGATCCCCGGTTTGCGCATTATGCCTCTCTGG
65 GCAGGATCGACAGCATGCA-AGAGGAACCAAGCTGATCCCCGGCTTGCGCATTATGCCTCTCCGA
** * *
33301696 CCGGTTGAGCGCCCGCACGCTCGTTTCATGCATTGACTTAG
129 CCGACTGAGAGCCCGCACGCTCATTTCATGCATTGACTTAG
* *
33301737 GCATACGAAGTTCATCCCCAGTCTAAGC
1 GCATACGGAGTTCAT-TCCAGTCTAAGC
33301765 ATACGGAGTT
Statistics
Matches: 159, Mismatches: 37, Indels: 5
0.79 0.18 0.02
Matches are distributed among these distances:
169 3 0.02
170 67 0.42
171 86 0.54
172 3 0.02
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.23
Consensus pattern (169 bp):
GCATACGGAGTTCATTCCAGTCTAAGCCCCAATCGGACCGAGGGTTGCGGTAGCAGGACCAGCAG
CAGGATCGACAGCATGCAAGAGGAACCAAGCTGATCCCCGGCTTGCGCATTATGCCTCTCCGACC
GACTGAGAGCCCGCACGCTCATTTCATGCATTGACTTAG
Found at i:33301767 original size:26 final size:26
Alignment explanation
Indices: 33301737--33301789 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
33301727 ATTGACTTAG
33301737 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
33301763 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
33301789 G
1 G
33301790 ATCGGACTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:33302273 original size:26 final size:26
Alignment explanation
Indices: 33302237--33302289 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33302227 CTTGGCTTAG
33302237 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
33302263 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
33302289 G
1 G
33302290 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:33303288 original size:159 final size:159
Alignment explanation
Indices: 33303089--33303643 Score: 572
Period size: 159 Copynumber: 3.5 Consensus size: 159
33303079 TTGTGTATTT
* * * * *
33303089 TGCCTCTTCGGTCGGCTGAGCGCCCGTACAC-CT-GTTTCGTGGGTTGGCTTAGGCATAGGGAGT
1 TGCCTCTCCGGTCGGCTCAGTGCCCG--CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
* *
33303152 TCATTGCATGTCTAAGCCCCAACCGGACCTAGGGTTGTGGTAGCGGGACCGACAGCAAGTAGAGG
64 TCATTCCATGTCTAAG-CCCAACCGGACCGAGGGTTGTGGTAGCGGGACCGACAGCAAGTAGAGG
*
33303217 GGGATCGGGCTGATCCCCGACTTGAC-CATTA
128 GGGACCGGGCTGATCCCCGACTTGACGCATTA
** *
33303248 TGCCTCTCCGACCGGCTCAGTGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTC
1 TGCCTCTCCGGTCGGCTCAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
**** * * * * * * *
33303313 ATTCCCA-GTCTAATGTTGGACTGGATCGAGGGTTGTAGCAACAGGATCGACAG-AACGTAG-GG
66 ATT-CCATGTCTAA-GCCCAACCGGACCGAGGGTTGTGGTAGCGGGACCGACAGCAA-GTAGAGG
* * * *
33303375 GGGACCAGG-TCGATCCCCG-TTTTACGCATTC
128 GGGACCGGGCT-GATCCCCGACTTGACGCATTA
* * ** ** *
33303406 TGCCTCTCCGGTCGACTGAGCACCCGCACATTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTC
1 TGCCTCTCCGGTCGGCTCAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
* * * *
33303471 ATTCCATGTCTAAGCCCAAGCCGGACCGAGGGTTGTGGTAGCGGGACCGGCAGCACGCAAAGGGG
66 ATTCCATGTCTAAGCCCAA-CCGGACCGAGGGTTGTGGTAGCGGGACCGACAGCAAGTAGAGGGG
** **
33303536 GACCGGGCTGATCCTTGACTTG-CGTGTTA
130 GACCGGGCTGATCCCCGACTTGACGCATTA
* *
33303565 TGCCTCTCCGGTCGGCTCAGTGCCCGCACGCTCGCTTCGTGGGTTGACTTAGGCATACGAAGTTC
1 TGCCTCTCCGGTCGGCTCAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
33303630 ATTCCCA-GTCTAAG
66 ATT-CCATGTCTAAG
33303644 ATCAGACCAG
Statistics
Matches: 314, Mismatches: 68, Indels: 28
0.77 0.17 0.07
Matches are distributed among these distances:
157 13 0.04
158 116 0.37
159 176 0.56
160 9 0.03
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.24
Consensus pattern (159 bp):
TGCCTCTCCGGTCGGCTCAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
ATTCCATGTCTAAGCCCAACCGGACCGAGGGTTGTGGTAGCGGGACCGACAGCAAGTAGAGGGGG
ACCGGGCTGATCCCCGACTTGACGCATTA
Found at i:33303662 original size:159 final size:159
Alignment explanation
Indices: 33302983--33303664 Score: 546
Period size: 159 Copynumber: 4.3 Consensus size: 159
33302973 CCCAGTCTAA
* * ** * * ** *
33302983 GCATACGGAGTTCATTCCCAGTCAAAAATCAGACCGGACCAAGGGTTGCGACAGCAGGATTGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGGCAGCAGGACCGACA
* * * * * * * * * * *
33303048 GCATGTAGGGGGGACC-GGATCGATCCTCGGCTTGTGTATTTTGCCTCTTCGGTCGGCTGAGCGC
66 GCACGAAAGGGGGACCGGGCTCGATCCCCGACTTGCGCATTATGCCTCTCCGGTCGGCTCAGCGC
*
33303112 CCGTACAC-CT-GTTTCGTGGGTTGGCTTAG
131 CCG--CACGCTCGTTTCGTGGGTTGACTTAG
* * ** * *
33303141 GCATAGGGAGTTCATT-GCATGTCTAAGCCCCA-ACCGGACCT-AGGGTTGTGGTAGCGGGACCG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGA-CTGAGGGTTGTGGCAGCAGGACCG
* * * **
33303203 ACAGCAAGTAGAGGGGGATCGGGCT-GATCCCCGACTTGAC-CATTATGCCTCTCCGACCGGCTC
63 ACAGCACG-AAAGGGGGACCGGGCTCGATCCCCGACTTG-CGCATTATGCCTCTCCGGTCGGCTC
* *
33303266 AGTGCCCGCACGCTCATTTCGTGGGTTGACTTAG
126 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
** * * * *
33303300 GCATACGGAGTTCATTCCCAGTCTAATG-TTGGACTGGA-TCGAGGGTTGTAGCAACAGGATCGA
1 GCATACGGAGTTCATTCCCAGTCTAA-GATCAGACCGGACT-GAGGGTTGTGGCAGCAGGACCGA
* * * * ** * * * *
33303363 CAGAACGTAGGGGGGACCAGG-TCGATCCCCGTTTTACGCATTCTGCCTCTCCGGTCGACTGAGC
64 CAGCACGAAAGGGGGACCGGGCTCGATCCCCGACTTGCGCATTATGCCTCTCCGGTCGGCTCAGC
* ** *
33303427 ACCCGCACATTCGTTTCGTGGGTTGGCTTAG
129 GCCCGCACGCTCGTTTCGTGGGTTGACTTAG
** * * * *
33303458 GCATACGGAGTTCATT-CCATGTCTAAGCCCA-AGCCGGACCGAGGGTTGTGGTAGCGGGACCGG
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGA-CCGGACTGAGGGTTGTGGCAGCAGGACCGA
** **
33303521 CAGCACGCAAAGGGGGACCGGGCT-GATCCTTGACTTGCGTGTTATGCCTCTCCGGTCGGCTCAG
64 CAGCACG-AAAGGGGGACCGGGCTCGATCCCCGACTTGCGCATTATGCCTCTCCGGTCGGCTCAG
* *
33303585 TGCCCGCACGCTCGCTTCGTGGGTTGACTTAG
128 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* *
33303617 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTG
33303665 CGACAGTAGG
Statistics
Matches: 401, Mismatches: 100, Indels: 45
0.73 0.18 0.08
Matches are distributed among these distances:
157 13 0.03
158 163 0.41
159 214 0.53
160 11 0.03
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.23
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGGCAGCAGGACCGACA
GCACGAAAGGGGGACCGGGCTCGATCCCCGACTTGCGCATTATGCCTCTCCGGTCGGCTCAGCGC
CCGCACGCTCGTTTCGTGGGTTGACTTAG
Found at i:33303663 original size:317 final size:317
Alignment explanation
Indices: 33302983--33303669 Score: 866
Period size: 317 Copynumber: 2.2 Consensus size: 317
33302973 CCCAGTCTAA
* * ** * * * *
33302983 GCATACGGAGTTCATTCCCAGTCAAAAATCAGACCGGACCAAGGGTTGCGACAGCAGGATTGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGAGACAACAGGATCGACA
* * * ** * * * * *
33303048 GCATGTAGGGGGGACCGGATCGATCCTCGGCTTGTGTATTTTGCCTCTTCGGTCGGCTGAGCGCC
66 GAACGTAGGGGGGACCGGATCGATCCCCGGCTTACGCATTCTGCCTCTCCGGTCGACTGAGCACC
* * *
33303113 CGTACACCTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTGCATGTCTAAGCCCCAACCGG
131 CGCACACCTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCGG
* * * *
33303178 ACCTAGGGTTGTGGTAGCGGGACCGACAGCAAGTAGAGGGGGATCGGGCTGATCCCCGACTTGAC
196 ACCGAGGGTTGTGGTAGCGGGACCGACAGCAAGCAAAGGGGGACCGGGCTGATCCCCGACTTGAC
*
33303243 CATTATGCCTCTCCGACCGGCTCAGTGCCCGCACGCTCATTTCGTGGGTTGACTTAG
261 CATTATGCCTCTCCGACCGGCTCAGTGCCCGCACGCTCACTTCGTGGGTTGACTTAG
** *
33303300 GCATACGGAGTTCATTCCCAGTCTAATG-TTGGACTGGA-TCGAGGGTTGTAG-CAACAGGATCG
1 GCATACGGAGTTCATTCCCAGTCTAA-GATCAGACCGGACT-GAGGGTTG-AGACAACAGGATCG
**
33303362 ACAGAACGTAGGGGGGACCAGG-TCGATCCCCGTTTTACGCATTCTGCCTCTCCGGTCGACTGAG
63 ACAGAACGTAGGGGGGACC-GGATCGATCCCCGGCTTACGCATTCTGCCTCTCCGGTCGACTGAG
*
33303426 CACCCGCACA-TTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG-CCCA
127 CACCCGCACACCT-GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCA
* * **
33303489 AGCCGGACCGAGGGTTGTGGTAGCGGGACCGGCAGCACGCAAAGGGGGACCGGGCTGATCCTTGA
191 A-CCGGACCGAGGGTTGTGGTAGCGGGACCGACAGCAAGCAAAGGGGGACCGGGCTGATCCCCGA
** ** *
33303554 CTTG-CGTGTTATGCCTCTCCGGTCGGCTCAGTGCCCGCACGCTCGCTTCGTGGGTTGACTTAG
255 CTTGAC-CATTATGCCTCTCCGACCGGCTCAGTGCCCGCACGCTCACTTCGTGGGTTGACTTAG
* * *
33303617 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGAGACA
33303670 GTAGGATCAA
Statistics
Matches: 313, Mismatches: 47, Indels: 20
0.82 0.12 0.05
Matches are distributed among these distances:
316 9 0.03
317 300 0.96
318 4 0.01
ACGTcount: A:0.20, C:0.26, G:0.31, T:0.23
Consensus pattern (317 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGAGACAACAGGATCGACA
GAACGTAGGGGGGACCGGATCGATCCCCGGCTTACGCATTCTGCCTCTCCGGTCGACTGAGCACC
CGCACACCTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCGG
ACCGAGGGTTGTGGTAGCGGGACCGACAGCAAGCAAAGGGGGACCGGGCTGATCCCCGACTTGAC
CATTATGCCTCTCCGACCGGCTCAGTGCCCGCACGCTCACTTCGTGGGTTGACTTAG
Found at i:33304166 original size:26 final size:26
Alignment explanation
Indices: 33304130--33304182 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
33304120 GTTGACTTAG
33304130 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
33304156 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
33304182 G
1 G
33304183 ATCAAACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:33305125 original size:26 final size:26
Alignment explanation
Indices: 33305095--33305147 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33305085 GTTAGCTTAC
33305095 GCATACGAAGTTCATTC-CATGTCTAA
1 GCATACGAAGTTCATTCTCA-GTCTAA
*
33305121 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGAAGTTCATTCTCAGTCTAA
33305147 G
1 G
33305148 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCTCAGTCTAA
Found at i:33306414 original size:26 final size:26
Alignment explanation
Indices: 33306385--33306437 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
33306375 GTTGACTTAG
* *
33306385 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* *
33306411 GCATATAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
33306437 G
1 G
33306438 ATCGGATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:33306922 original size:26 final size:26
Alignment explanation
Indices: 33306892--33306944 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33306882 ATTGGCTTAG
33306892 GCATACAGAGTTCATTCC-ATGTCTAA
1 GCATACAGAGTTCATTCCTA-GTCTAA
*
33306918 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
33306944 G
1 G
33306945 ATCAAACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:33313163 original size:26 final size:26
Alignment explanation
Indices: 33313134--33313186 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
33313124 GGTAACTTAG
33313134 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
33313160 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
33313186 G
1 G
33313187 ATCGAACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:33313685 original size:26 final size:26
Alignment explanation
Indices: 33313635--33313687 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
33313625 GTTGACTTAG
* * *
33313635 GCATACGGAGTTCATGCCTAGTCTAA
1 GCATACGGAGTTCATCCCCACTCTAA
33313661 GCATACGGAGTTCATCCCCACTCTAA
1 GCATACGGAGTTCATCCCCACTCTAA
33313687 G
1 G
33313688 ATCGAATCAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCACTCTAA
Found at i:33314013 original size:26 final size:26
Alignment explanation
Indices: 33313977--33314029 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33313967 GTTAGCTTAG
*
33313977 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATATAGAGTTCATTACCA-GTCTAA
33314003 GCATATAGAGTTCATTACCAGTCTAA
1 GCATATAGAGTTCATTACCAGTCTAA
33314029 G
1 G
33314030 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATATAGAGTTCATTACCAGTCTAA
Found at i:33314732 original size:26 final size:26
Alignment explanation
Indices: 33314702--33314754 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
33314692 GTTGACTTAG
*
33314702 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
33314728 GCATACATAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
33314754 G
1 G
33314755 ATCGGATCGT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:33315029 original size:159 final size:159
Alignment explanation
Indices: 33314828--33315231 Score: 458
Period size: 159 Copynumber: 2.5 Consensus size: 159
33314818 CCCGATTTAC
* * * * * *
33314828 GCATTCTGCCTCTCTGGCCGGCTAAGCACCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGG
1 GCATTATGCCTCTCCGGCCGGCTTAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAAG
* * * *
33314893 GAGTTCATTCCATGTCTAAGCCCCAG-CCGGACCGAGGGTTGTGGCAGCAGGATCGGCAACACAC
66 GAGTTCATTCCATGTCTAAGCACCAGACCGGACCGAGGGTTGTAGCAGCAGGATAGACAACACAC
*
33314957 AGAGGTGGACCAAGTCGATCCCCAGCTTAT
131 -GAGGGGGACCAAGTCGATCCCCAGCTTAT
* *
33314987 GCGTTATGCCTCTCCGGCCGGCTTAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAAG
1 GCATTATGCCTCTCCGGCCGGCTTAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAAG
* * ** *
33315052 GAGTTCATTCTCA-GTCTAAG-ATCAGACTGGACCGAGGGTTGTAGCAGCAGGATAGACAGGACG
66 GAGTTCATTC-CATGTCTAAGCACCAGACCGGACCGAGGGTTGTAGCAGCAGGATAGACAACACA
* * * * *
33315115 CGGGGGGGACCGAGTCGATCCTCGGCTTGT
130 CGAGGGGGACCAAGTCGATCCCCAGCTTAT
* * * * * * *
33315145 GCATTCTGCCTCTCCAG-CTGCTTGAGCGCTCGTACGCTCGTTTCATGGGTCGGCTTAGGCATAC
1 GCATTATGCCTCTCCGGCCGGCTT-AGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATA-
*
33315209 A-GAGTTCATTCGATGTCTAAGCA
64 AGGAGTTCATTCCATGTCTAAGCA
33315232 TACAGAGTTC
Statistics
Matches: 206, Mismatches: 33, Indels: 12
0.82 0.13 0.05
Matches are distributed among these distances:
157 6 0.03
158 91 0.44
159 107 0.52
160 2 0.01
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.24
Consensus pattern (159 bp):
GCATTATGCCTCTCCGGCCGGCTTAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAAG
GAGTTCATTCCATGTCTAAGCACCAGACCGGACCGAGGGTTGTAGCAGCAGGATAGACAACACAC
GAGGGGGACCAAGTCGATCCCCAGCTTAT
Found at i:33315252 original size:26 final size:26
Alignment explanation
Indices: 33315203--33315255 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33315193 GTCGGCTTAG
*
33315203 GCATACAGAGTTCATTCGATGTCTAA
1 GCATACAGAGTTCATTCCATGTCTAA
33315229 GCATACAGAGTTCATTCCCA-GTCTAA
1 GCATACAGAGTTCATT-CCATGTCTAA
33315255 G
1 G
33315256 ATCAGACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGTCTAA
Found at i:33317326 original size:26 final size:26
Alignment explanation
Indices: 33317290--33317342 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
33317280 GTTGGCTTAG
33317290 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATATGGAGTTCATTCCCA-GTCTAA
33317316 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
33317342 G
1 G
33317343 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:33324251 original size:26 final size:26
Alignment explanation
Indices: 33324222--33324274 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
33324212 TCTCTGTTCG
33324222 GCATAC-GATGTTCA-TCCTCAGTCTAA
1 GCATACGGA-GTTCATTCC-CAGTCTAA
33324248 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
33324274 G
1 G
33324275 ATTGAACCGA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:33324620 original size:26 final size:26
Alignment explanation
Indices: 33324590--33324642 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
33324580 GTTGACTTAG
* *
33324590 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCACAGTCTAA
*
33324616 GCATACAGAGTTCATTCACAGTCTAA
1 GCATACAGAGTTCATCCACAGTCTAA
33324642 G
1 G
33324643 ATCGGATTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCACAGTCTAA
Found at i:33325116 original size:159 final size:156
Alignment explanation
Indices: 33324616--33325117 Score: 499
Period size: 158 Copynumber: 3.2 Consensus size: 156
33324606 CCCAGTCTAA
* * * * * * **
33324616 GCATACAGAGTTCATTCACAGTCTAAGATCGGATTGGA-TCGAGGGTTGCGACAGCAGGATCGGT
1 GCATACGGAGTTCATTC-CAGTCTAAGATCAGACTGAACT-GAGGGTTGTGGCAGCAGGATCGAC
* * * *
33324680 AGCACGCAGGTGGGATCGGGTCGATCCTCGGCTTGCGCATTCTGCCTCTCTGACCGGCTGAGCGC
64 AGCACGCAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGC
* *
33324745 CCGCACGCCCGTTTCATGGGTTGGCTTAG
129 CCGCACGCTCGTTTCGTGGGTT-GCTTAG
* ** * * * *
33324774 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGATC-GAGGGTTGTGGCAGCGGGA-CTGA
1 GCATACGGAGTTCATTCCA-GTCTAAG-ATCAGACTGAACTGAGGGTTGTGGCAGCAGGATC-GA
* * * * * * * * * * *
33324837 CAGCACGCAGAGGGGGACCGGGACGATCCCTGGCTTGTGCATTATGCCTTTTCGGTTGGCTCAAC
63 CAGCACGCAG-GGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGC
* *
33324902 -ACCGCACGCTCGTTTCGTGGGTTGACTTAC
127 GCCCGCACGCTCGTTTCGTGGGTTG-CTTAG
* *
33324932 GCATACGGAGTTCATTCCCAATCTAAGATCAGACTGAACTGAGGATTGTGGCAGCAGGATCGACA
1 GCATACGGAGTTCATT-CCAGTCTAAGATCAGACTGAACTGAGGGTTGTGGCAGCAGGATCGACA
* * * *
33324997 GCACGTCAGGGGGGATCAGGTCAATCCCCGACTTGCACATTCTGCCTCTCCGATCGGCTGAGCGC
65 GCACG-CAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGC
*
33325062 CCGTACGCTCGTTTCGTGGGTTCGCTTAG
129 CCGCACGCTCGTTTCGTGGGTT-GCTTAG
33325091 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCA-GTCTAAG
33325118 CATATGGAGT
Statistics
Matches: 269, Mismatches: 62, Indels: 25
0.76 0.17 0.07
Matches are distributed among these distances:
157 11 0.04
158 161 0.60
159 96 0.36
160 1 0.00
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCAGACTGAACTGAGGGTTGTGGCAGCAGGATCGACAG
CACGCAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCC
GCACGCTCGTTTCGTGGGTTGCTTAG
Found at i:33325120 original size:26 final size:26
Alignment explanation
Indices: 33325091--33325143 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33325081 GTTCGCTTAG
33325091 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
33325117 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
33325143 G
1 G
33325144 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:33326339 original size:26 final size:26
Alignment explanation
Indices: 33326302--33326354 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33326292 GTTGGCTTAG
*
33326302 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
33326328 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
33326354 G
1 G
33326355 ATTTTGTGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:33327061 original size:26 final size:26
Alignment explanation
Indices: 33327032--33327087 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
33327022 TGGGTTGCCT
*
33327032 TAAGCATACGGAGTTCATTCC-ATGTC
1 TAAGCATACAGAGTTCATTCCTA-GTC
*
33327058 TAAGCATACATAGTTCATTCCTAGTC
1 TAAGCATACAGAGTTCATTCCTAGTC
33327084 TAAG
1 TAAG
33327088 ATCAGACGAG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
26 26 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.16, T:0.32
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATTCCTAGTC
Found at i:33327932 original size:158 final size:157
Alignment explanation
Indices: 33327540--33327932 Score: 434
Period size: 158 Copynumber: 2.5 Consensus size: 157
33327530 CGCATGCCCA
* *
33327540 TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGACCCAG-TCGGACCGAGGGT
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCA-GTCTAAGA-TCAGATCGGACCGAGGGT
** * * *** ** *
33327604 TGTGGTAGCAGGATCGACAGCACGTAGAGGGGGATCGATCGATCTTTGGCTTGTGCATTATGCCT
64 TGCAGTAGCAGGATCGACAGCACGCAGAGGGGGATCGACCGATCCCCGGCTTGCACATTATACCT
*
33327669 CTCCGACCGGCTTAGCGCCCACACGCTCG
129 CTCCGACCGGCTGAGCGCCCACACGCTCG
* * *
33327698 TTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGA-CTGGACCGAGGGT
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCAGTCTAAGATCAGATC-GGACCGAGGGT
* * * * *
33327762 TGCAGCAGCAGGATCGATAGCATGCAGA-GGGGATCGGGCCGATCCCCGGCTTGCACATTCTACC
64 TGCAGTAGCAGGATCGACAGCACGCAGAGGGGGATC-GACCGATCCCCGGCTTGCACATTATACC
* * * *
33327826 TCTCTTG-TCGGCTGAGCGCCCGCACGTTCG
128 TCTC-CGACCGGCTGAGCGCCCACACGCTCG
* **
33327856 TTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGATCGGACTAAGGGTT
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCC-AGTCTAAGATCAGATCGGACCGAGGGTT
*
33327921 GCAGTACCAGGA
65 GCAGTAGCAGGA
33327933 CCAGCAGTAG
Statistics
Matches: 195, Mismatches: 33, Indels: 14
0.81 0.14 0.06
Matches are distributed among these distances:
157 13 0.07
158 177 0.91
159 5 0.03
ACGTcount: A:0.20, C:0.24, G:0.30, T:0.25
Consensus pattern (157 bp):
TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAGTCTAAGATCAGATCGGACCGAGGGTTG
CAGTAGCAGGATCGACAGCACGCAGAGGGGGATCGACCGATCCCCGGCTTGCACATTATACCTCT
CCGACCGGCTGAGCGCCCACACGCTCG
Found at i:33328455 original size:112 final size:112
Alignment explanation
Indices: 33328255--33328496 Score: 286
Period size: 112 Copynumber: 2.2 Consensus size: 112
33328245 CCCAGTCTAA
* * * *
33328255 GCATACGGAGTTCATTCCTAGTTTAAGATCAGACCAGATCGATCCCTAGCTTGCGCATTATGCCT
1 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGATCCCTAGCTTGCGCATTATGCCT
* * * *
33328320 CTTCGGCCGGCTCAGTGCTCGCACGATCGTTTCATGGGTTGACTTAT
66 CTCCGGCCGGCTCAGCGCCCGCACGATCGTTTCATGGGTTGACTTAG
* * * * * * * * *
33328367 GCATACAGAGATCATTCCCAATCTAAGATCGGACCGGACCGATCCTTGGCTTGTGCATTCTGCTT
1 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGATCCCTAGCTTGCGCATTATGCCT
* * * * *
33328432 CTCCGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
66 CTCCGGCCGGCTCAGCGCCCGCACGATCGTTTCATGGGTTGACTTAG
33328479 GCATACGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
33328497 ATGTCTAAGC
Statistics
Matches: 106, Mismatches: 24, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
112 106 1.00
ACGTcount: A:0.18, C:0.28, G:0.25, T:0.29
Consensus pattern (112 bp):
GCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGATCCCTAGCTTGCGCATTATGCCT
CTCCGGCCGGCTCAGCGCCCGCACGATCGTTTCATGGGTTGACTTAG
Found at i:33328516 original size:26 final size:26
Alignment explanation
Indices: 33328479--33328531 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33328469 GTTGGCTTAG
*
33328479 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
33328505 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
33328531 G
1 G
33328532 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:33329226 original size:26 final size:26
Alignment explanation
Indices: 33329197--33329249 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33329187 GTTGACTTAG
*
33329197 GCATATGGAGTTTA-TCCCTAGTCTAA
1 GCATATGGAGTTCATTCCC-AGTCTAA
33329223 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
33329249 G
1 G
33329250 ATCAAACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:33329518 original size:159 final size:159
Alignment explanation
Indices: 33329355--33329726 Score: 385
Period size: 158 Copynumber: 2.3 Consensus size: 159
33329345 TGAGCACCCG
* * * * *
33329355 CACGCCCATTTCGTTGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGA-A
1 CACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACGAGA
* ** * * *
33329419 CTGAAGCTTATGGCAGCGGGA-CGGGTAGCAAGCAGAGGAGGATCGGGTCGATCC-CTGGCTTGC
66 CAGAAGCTTATGGCAGCGGGATC-GACAGCAAGCA-AGGAGGACCGGCTCGATCCTC-AGCTTGC
* * *
33329482 GCATTATGCCTCTCCGGTCAGTTCAGTGCCCA
128 GCATTATACCTCTCCGGCCAGCTCAGTGCCCA
* * ** ** *
33329514 CACGCTCATTTTGTGGGTTGACTTAGGCATACAAAGTTCATTCCCA-GTCTAAG-ACGGGACTAG
1 CACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGACGAG
* * * * * * *
33329577 ACAGAGGGTTGTGGCAGTGGGATCGACAGCACGCAAGGGGGACCGGCTTGATCCTCAGCTTGCGC
65 ACAGAAGCTTATGGCAGCGGGATCGACAGCAAGCAAGGAGGACCGGCTCGATCCTCAGCTTGCGC
* * *
33329642 ATTCTACCTCTCCGGCCAGCTGAGTGCCCG
130 ATTATACCTCTCCGGCCAGCTCAGTGCCCA
*
33329672 CACGCTCATTTCGTGGGTTGGTTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
1 CACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
33329727 TACAGAGTTC
Statistics
Matches: 171, Mismatches: 36, Indels: 12
0.78 0.16 0.05
Matches are distributed among these distances:
157 3 0.02
158 95 0.56
159 69 0.40
160 4 0.02
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (159 bp):
CACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACGAGA
CAGAAGCTTATGGCAGCGGGATCGACAGCAAGCAAGGAGGACCGGCTCGATCCTCAGCTTGCGCA
TTATACCTCTCCGGCCAGCTCAGTGCCCA
Found at i:33329734 original size:26 final size:26
Alignment explanation
Indices: 33329698--33329750 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33329688 GTTGGTTTAG
*
33329698 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
33329724 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
33329750 G
1 G
33329751 ACCAGACTAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:33330051 original size:159 final size:158
Alignment explanation
Indices: 33329731--33330068 Score: 367
Period size: 159 Copynumber: 2.1 Consensus size: 158
33329721 TAAGCATACA
*
33329731 GAGTTCATTCCCAGTCTAAGACCAGACTAGACCGAGGGTTGCGATAGTAGGATCGGCAGCACGCA
1 GAGTTCATTCCCAGTCTAAGACCAGACTAGACCGAGGGTTGCGACAGTAGGATCGGCAGCACGCA
* * ** * *
33329796 GGGGGGACCAAGCCGATCCCTGGCTTTCACATTAAGTGTCTTCGGTCGGTTAAGCGCCCACACGC
66 GGGGGGACCAAGCCGATCCCCGGCTTACACATTAAGCCTATTCGATCGGTTAAGCGCCCACACGC
*
33329861 CTATTTCATGGGTTGGCTTAGGCATAGG
131 CTATTTCATGGGTTGACTTAGGCATAGG
* * * * * *
33329889 GAGTTCCTT-CCATGTCTAAGCCCCAG-CTAGACCGAGGGTTGTGGCAGTGGGATCGGTAGCACG
1 GAGTTCATTCCCA-GTCTAAG-ACCAGACTAGACCGAGGGTTGCGACAGTAGGATCGGCAGCACG
** * * * * * *
33329952 CAGAGGGGGACCGGGCTGATCCCCGGCTTACGCATTATGCCTATTCGATCGGTTTAGTGCCCGCA
64 CAG-GGGGGACCAAGCCGATCCCCGGCTTACACATTAAGCCTATTCGATCGGTTAAGCGCCCACA
* * *** *
33330017 CG-CTCGTTTCGTGGGTTGACTTATTTATATG
128 CGCCT-ATTTCATGGGTTGACTTAGGCATAGG
33330048 GAGTTCATTCCCAGTCTAAGA
1 GAGTTCATTCCCAGTCTAAGA
33330069 TCAAACCGGA
Statistics
Matches: 145, Mismatches: 30, Indels: 10
0.78 0.16 0.05
Matches are distributed among these distances:
157 3 0.02
158 52 0.36
159 87 0.60
160 3 0.02
ACGTcount: A:0.20, C:0.25, G:0.30, T:0.25
Consensus pattern (158 bp):
GAGTTCATTCCCAGTCTAAGACCAGACTAGACCGAGGGTTGCGACAGTAGGATCGGCAGCACGCA
GGGGGGACCAAGCCGATCCCCGGCTTACACATTAAGCCTATTCGATCGGTTAAGCGCCCACACGC
CTATTTCATGGGTTGACTTAGGCATAGG
Found at i:33330133 original size:501 final size:501
Alignment explanation
Indices: 33329123--33330252 Score: 1232
Period size: 501 Copynumber: 2.3 Consensus size: 501
33329113 TACCACCCGT
* * * * * * *
33329123 TCGATCCCCGGCTTTCGCATCCTGCCTCTCTGGTCAACTGAGCGCCCGCACGCTCGTTTCATGTG
1 TCGATCCTCAGCTTACGCATTCTGCCTCTCCGGTCAGCTGAGCGCCCGCACGCTCGTTTCATGGG
* * * * * *
33329188 TTGACTTAGGCATATGGAGTTTA-TCCCTAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGAT
66 TTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAC
* * * ** *
33329252 CAAACCAGATCGAACGTTGCGACAACAGGATCGACAGCACGCAGGGGGGATCGAGTTGATCCGTG
130 CAAACCAGACCGAACGTTGCGACAACAGGATCGACAGCACGCAGGGGGGACCAAGCCGATCCCTG
* * * * * *
33329317 GCTTGTGCATTCTACCTCTCCAGTCAACTGAGCACCCGCACGCCCATTTCGTTGGTTGGCTTAGG
195 GCTTGTACATTCAACCTCTCCAGTCAACTAAGCACCCACACGCCCATTTCATGGGTTGGCTTAGG
* *
33329382 CATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGAACTGAAGCTTATGGCAGCGGGACGGGTAG
260 CATAGGGAGTTCATTCCATGTCTAAGCCCCAGTAGAACCGAAGCTTATGGCAGCGGGACGGGTAG
* * * * *
33329447 CAAGCAGAGGAGGATCGGGTCGATCCCTGGCTTGCGCATTATGCCTCTCCGGTCAGTTCAGTGCC
325 CAAGCAGAGGAGGACCGGGTCGATCCCCGGCTTACGCATTATGCCTATCCGATCAGTTCAGTGCC
* ** *
33329512 CACACGCTCATTTTGTGGGTTGACTTAGGCATACAAAGTTCATTCCCAGTCTAAGACGGGACTAG
390 CACACGCTCATTTCGTGGGTTGACTTAGGCATACAAAGTTCATTCCCAGTCTAAGACGAAACCAG
** ** * *
33329577 ACAGAGGGTTGTGGCAGTGGGATCGACAGCACGCAAGGGGGACCGGC
455 ACAGAGGGTTACGGCAGCAGGATCGACAACACGAAAGGGGGACCGGC
* * * * * * *
33329624 TTGATCCTCAGCTTGCGCATTCTACCTCTCCGGCCAGCTGAGTGCCCGCACGCTCATTTCGTGGG
1 TCGATCCTCAGCTTACGCATTCTGCCTCTCCGGTCAGCTGAGCGCCCGCACGCTCGTTTCATGGG
* *
33329689 TTGGTTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGACC
66 TTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGACC
* * ** * ** *
33329754 AGACTAGACCGAGGGTTGCGATAGTAGGATCGGCAGCACGCAGGGGGGACCAAGCCGATCCCTGG
131 AAACCAGACCGAACGTTGCGACAACAGGATCGACAGCACGCAGGGGGGACCAAGCCGATCCCTGG
** * * *** * *
33329819 CTT-TCACATT-AAGTGTCTTCGGTCGGTTAAGCGCCCACACGCCTATTTCATGGGTTGGCTTAG
196 CTTGT-ACATTCAA-CCTCTCCAGTCAACTAAGCACCCACACGCCCATTTCATGGGTTGGCTTAG
* * * * *
33329882 GCATAGGGAGTTCCTTCCATGTCTAAGCCCCAGCTAG-ACCGAGGGTTGTGGCAGTGGGATC-GG
259 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TAGAACCGAAGCTTATGGCAGCGGGA-CGGG
* * * * *
33329945 TAGCACGCAGAGGGGGACCGGG-CTGATCCCCGGCTTACGCATTATGCCTATTCGATCGGTTTAG
322 TAGCAAGCAGAGGAGGACCGGGTC-GATCCCCGGCTTACGCATTATGCCTATCCGATCAGTTCAG
* * *** ***
33330009 TGCCCGCACGCTCGTTTCGTGGGTTGACTTATTTATATGGAGTTCATTCCCAGTCTAAGATC-AA
386 TGCCCACACGCTCATTTCGTGGGTTGACTTAGGCATACAAAGTTCATTCCCAGTCTAAGA-CGAA
* * * ** *
33330073 ACCGGACTGAGGGTTACGGTAGCAGGATCGACAACAC-AAAGGGGGGATTGGG
450 ACCAGACAGAGGGTTACGGCAGCAGGATCGACAACACGAAA-GGGGGACCGGC
* * * * *
33330125 TCGATCCTCAACTTACGCATTCTGCATCTCCAGTCGGTTGAGCGCCCGCACGCTCGTTTCATGGG
1 TCGATCCTCAGCTTACGCATTCTGCCTCTCCGGTCAGCTGAGCGCCCGCACGCTCGTTTCATGGG
* * *
33330190 TTGGCTTAGGCATACGAAGTCCATTCCATGTCTAAGCATACGGAGTTCATTGCCAGTCTAAGA
66 TTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
33330253 TTTTGACCCA
Statistics
Matches: 513, Mismatches: 108, Indels: 16
0.81 0.17 0.03
Matches are distributed among these distances:
500 5 0.01
501 500 0.97
502 8 0.02
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.25
Consensus pattern (501 bp):
TCGATCCTCAGCTTACGCATTCTGCCTCTCCGGTCAGCTGAGCGCCCGCACGCTCGTTTCATGGG
TTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGACC
AAACCAGACCGAACGTTGCGACAACAGGATCGACAGCACGCAGGGGGGACCAAGCCGATCCCTGG
CTTGTACATTCAACCTCTCCAGTCAACTAAGCACCCACACGCCCATTTCATGGGTTGGCTTAGGC
ATAGGGAGTTCATTCCATGTCTAAGCCCCAGTAGAACCGAAGCTTATGGCAGCGGGACGGGTAGC
AAGCAGAGGAGGACCGGGTCGATCCCCGGCTTACGCATTATGCCTATCCGATCAGTTCAGTGCCC
ACACGCTCATTTCGTGGGTTGACTTAGGCATACAAAGTTCATTCCCAGTCTAAGACGAAACCAGA
CAGAGGGTTACGGCAGCAGGATCGACAACACGAAAGGGGGACCGGC
Found at i:33330240 original size:26 final size:26
Alignment explanation
Indices: 33330199--33330251 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
33330189 GTTGGCTTAG
33330199 GCATACGAAGTCCATT-CCATGTCTAA
1 GCATACGAAGTCCATTGCCA-GTCTAA
* *
33330225 GCATACGGAGTTCATTGCCAGTCTAA
1 GCATACGAAGTCCATTGCCAGTCTAA
33330251 G
1 G
33330252 ATTTTGACCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTCCATTGCCAGTCTAA
Found at i:33330948 original size:26 final size:26
Alignment explanation
Indices: 33330919--33330971 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
33330909 GTTCACTTAG
33330919 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
33330945 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
33330971 G
1 G
33330972 ATCGGATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:33331659 original size:26 final size:26
Alignment explanation
Indices: 33331629--33331681 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33331619 GTTGGCTTAG
33331629 GCATATGGAATTCATT-CCATGTCTAA
1 GCATATGGAATTCATTCCCA-GTCTAA
*
33331655 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAATTCATTCCCAGTCTAA
33331681 G
1 G
33331682 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATATGGAATTCATTCCCAGTCTAA
Found at i:33331732 original size:184 final size:184
Alignment explanation
Indices: 33331411--33331840 Score: 463
Period size: 184 Copynumber: 2.3 Consensus size: 184
33331401 CGGTTGGCTG
* * * * * * * *
33331411 AGCGCCCGCACGCACGTTTCATTGGTTGACTTAGGCATACAGACTTCA-TCCCTAGTCTAAGCAT
1 AGCGCCCGCACACTCATTTCATGGGTTGGCTTAGGCATACGGAATTCATTCCAT-GTCTAAGCAT
* ** *
33331475 ATGGAGTTCATTCCTAATCTAAGATCGGATCAGACCAGGGTTACGGTAATAGGATCGACAGCACA
65 ATGGAGTTCATTCCCAATCTAAGATCGGATCAGACCAGGGTTACGACAACAGGATCGACAGCACA
* * * *
33331540 TAAGGGGGGATCGAGCCGATCCCTGGCTTGCGCATTCTACCTCTCCGGCCAGCTA
130 GAAGGGGGGACCGAGCCGATCCCCGGCTTGCACATTCTACCTCTCCGGCCAGCTA
* *
33331595 AGCGCCCGCATGA-TCATTTCATGGGTTGGCTTAGGCATATGGAATTCATTCCATGTCTAAGCAT
1 AGCGCCCGCA-CACTCATTTCATGGGTTGGCTTAGGCATACGGAATTCATTCCATGTCTAAGCAT
* * * *
33331659 ATGGAGTTCATTCCCAGTCTAAGATCGGA-CTGGATCGAGGGTTGCGACAACAGGATCGACAGCA
65 ATGGAGTTCATTCCCAATCTAAGATCGGATC-AGA-CCAGGGTTACGACAACAGGATCGACAGCA
* * ** * * *
33331723 C-GCAGGGGGGACCGGGTTGATCCCCGGCTTGCACATTCTACCTCTCCGGTCGGCTG
128 CAGAAGGGGGGACCGAGCCGATCCCCGGCTTGCACATTCTACCTCTCCGGCCAGCTA
* * * ** * * *
33331779 AGCGCTCGTACACTCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCGTGTCTAAGC
1 AGCGCCCGCACACTCATTTCATGGGTTGGCTTAGGCATACGGAATTCATTCCATGTCTAAGC
33331841 CCTAGTCGGA
Statistics
Matches: 203, Mismatches: 38, Indels: 10
0.81 0.15 0.04
Matches are distributed among these distances:
183 2 0.01
184 172 0.85
185 29 0.14
ACGTcount: A:0.22, C:0.26, G:0.27, T:0.25
Consensus pattern (184 bp):
AGCGCCCGCACACTCATTTCATGGGTTGGCTTAGGCATACGGAATTCATTCCATGTCTAAGCATA
TGGAGTTCATTCCCAATCTAAGATCGGATCAGACCAGGGTTACGACAACAGGATCGACAGCACAG
AAGGGGGGACCGAGCCGATCCCCGGCTTGCACATTCTACCTCTCCGGCCAGCTA
Found at i:33332314 original size:158 final size:159
Alignment explanation
Indices: 33331655--33332304 Score: 624
Period size: 158 Copynumber: 4.1 Consensus size: 159
33331645 CCATGTCTAA
* * * * *
33331655 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACTGGATCGAGGGTTGCGACAACAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAACAGGACCGACA
* * * * *
33331720 GCACGCAG-GGGGGACCGGGTTGATCCCCGGCTTGCACATTCTACCTCTCCGGTCGGCTGAGCGC
66 GCACGCAGAGGGGGACCGAGTCGATCCTCGGCTTGCACATTATACCTCTTCGGTCGGCTGAGCGC
* * * * *
33331784 TCGTACACTCGTTTTGTGGGTTGGCTTAG
131 CCGCACGCTCGTTTCGTGGGTTGACTTAG
* ** ** * * *
33331813 GCATAGGGAGTTCATTCCGTGTCTAAGCCCTAG-TCGGACCGAGGGTTGTGGCAACAGGACCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATC-AGACCGGACCGAGGGTTGCGACAACAGGACCGAC
* * * * * ** * * *
33331877 AGCACGTAGAGGGGTACCGAGCCGATCCCCGACTTGTGCATTATGCCTCTTCGGTCGGCTCAGCA
65 AGCACGCAGAGGGGGACCGAGTCGATCCTCGGCTTGCACATTATACCTCTTCGGTCGGCTGAGCG
* * ** *
33331942 CCTGCACGCTCATTTTTTGGGTTGACTTAT
130 CCCGCACGCTCGTTTCGTGGGTTGACTTAG
* ** * * *
33331972 GCATACAGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGACAGCGGGACCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAACAGGACCGACA
* * * * * * * *
33332037 GCACGCAGAGGGGGATCGGGTCGATCCTCGGCTTGCGCA-TATGCCTCTTCGGCCGACTTAGTGC
66 GCACGCAGAGGGGGACCGAGTCGATCCTCGGCTTGCACATTATACCTCTTCGGTCGGCTGAGCGC
* * * *
33332101 CCGCACGCTCGTTTCATTGGTTGACCTAT
131 CCGCACGCTCGTTTCGTGGGTTGACTTAG
* ** * * * *
33332130 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGTAGCAAGATCAACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAACAGGACCGACA
* * * * *
33332195 GCATGCAG-GGGGGACCGAGTCGATCCTCAGCTTACACATTCTACCTCTTCGATCGGCTGAGCGC
66 GCACGCAGAGGGGGACCGAGTCGATCCTCGGCTTGCACATTATACCTCTTCGGTCGGCTGAGCGC
* *
33332259 CCGCACGCTCGTCTCGTGGGTTGGCTTAG
131 CCGCACGCTCGTTTCGTGGGTTGACTTAG
*
33332288 GCATATGGAGTTCATTC
1 GCATACGGAGTTCATTC
33332305 TATGTCTAAG
Statistics
Matches: 391, Mismatches: 97, Indels: 8
0.79 0.20 0.02
Matches are distributed among these distances:
157 25 0.06
158 220 0.56
159 146 0.37
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAACAGGACCGACA
GCACGCAGAGGGGGACCGAGTCGATCCTCGGCTTGCACATTATACCTCTTCGGTCGGCTGAGCGC
CCGCACGCTCGTTTCGTGGGTTGACTTAG
Found at i:33333585 original size:26 final size:26
Alignment explanation
Indices: 33333549--33333627 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
33333539 GTTGACTTAG
33333549 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
33333575 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
33333601 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
33333627 G
1 G
33333628 ATCGGACCGG
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.28, C:0.29, G:0.19, T:0.24
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:33333963 original size:159 final size:158
Alignment explanation
Indices: 33333601--33333967 Score: 354
Period size: 159 Copynumber: 2.3 Consensus size: 158
33333591 CCCAGTCTAA
* **
33333601 GCATACGGAGTTCATTCCCAGTCTAAGATC-GGACCGGATCGAGGGTTGCGACAGCAGGATTGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGG-CCGGACCGAGGGTTGCGACAGCAGGACCGGC
* * * * **
33333665 AGCACGCAGGGGGGACCGGGCCGATCCTCTACTTGCGCATTCTGCCTCTCTGACCGGCTGAGTGC
65 AGCACGCAGGGGGGACCAGGCCGATCCTCTACTTGCGCATTATGCCACTCTGACCGGCTCAGCAC
* * *
33333730 TCGCACGCCCGTTTCACTGGTTGGCTTAG
130 CCGCACGCCCATTTCACTGGTTGACTTAG
* * * **
33333759 GCATAGGGAGTTCATT-CCATGTCTAAG-TCCCA-GTCGGACCGAGGGTTGTTG-CAGTGGGACC
1 GCATACGGAGTTCATTCCCA-GTCTAAGAT--CAGGCCGGACCGAGGGTTG-CGACAGCAGGACC
* * **
33333820 GGTAGCATGCAGAGGGGGACCAGGCCGATCC-CTGACTTGCGCATTATGCCACT-TCGGTCGGCT
62 GGCAGCACGCAG-GGGGGACCAGGCCGATCCTCT-ACTTGCGCATTATGCCACTCT-GACCGGCT
* * * * *
33333883 CAGCACCCGTATGCTCATTTC-GTGGGTTGACTTAT
124 CAGCACCCGCACGCCCATTTCACT-GGTTGACTTAG
*
33333918 GCATACGGAGTTCATTCCCAGTCTAAGATCAGGCCGGACCAAGGGTTGCG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGGCCGGACCGAGGGTTGCG
33333968 GTAGTAGAAT
Statistics
Matches: 167, Mismatches: 30, Indels: 24
0.76 0.14 0.11
Matches are distributed among these distances:
157 4 0.02
158 58 0.35
159 101 0.60
160 4 0.02
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGGCCGGACCGAGGGTTGCGACAGCAGGACCGGCA
GCACGCAGGGGGGACCAGGCCGATCCTCTACTTGCGCATTATGCCACTCTGACCGGCTCAGCACC
CGCACGCCCATTTCACTGGTTGACTTAG
Found at i:33334080 original size:158 final size:158
Alignment explanation
Indices: 33333601--33334102 Score: 478
Period size: 158 Copynumber: 3.2 Consensus size: 158
33333591 CCCAGTCTAA
* * *
33333601 GCATACGGAGTTCATTCCCAGTCTAAGATC-GGACCGGATCGAGGGTTGCGACAGCAGGATTGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGG-CCGGACCGAGGGTTGCGGCAGTAGGATTGGC
* * * *
33333665 AGCACGCAGGGGGGACCGGGCCGATCCTCTACTTGCGCATTCTGCCTCTCTGACCGGCTGAGTGC
65 AGCACGCAAGGGGGACCGGGCCGATCCTCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGC
* * * *
33333730 TCGCACGCCCGTTTCACT-GGTTGGCTTAG
130 CCGTACGCTCGTTTC-GTGGGTTGGCTTAG
* * ** * **
33333759 GCATAGGGAGTTCATT-CCATGTCTAAG-TCCCA-GTCGGACCGAGGGTTGTTGCAGTGGGACCG
1 GCATACGGAGTTCATTCCCA-GTCTAAGAT--CAGGCCGGACCGAGGGTTGCGGCAGTAGGATTG
* * * * * * ** *
33333821 GTAGCATGCAGAGGGGGACCAGGCCGATCC-CTGACTTGCGCATTATGCCACTTCGGTCGGCTCA
63 GCAGCACGCA-AGGGGGACCGGGCCGATCCTC-GACTTGCGCATTCTGCCTCTCCGACCGGCTGA
* * * * *
33333885 GCACCCGTATGCTCATTTCGTGGGTTGACTTAT
126 GCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAG
* * * *
33333918 GCATACGGAGTTCATTCCCAGTCTAAGATCAGGCCGGACCAAGGGTTGCGGTAGTAGAATTGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGGCCGGACCGAGGGTTGCGGCAGTAGGATTGGCA
* * * * **
33333983 GCACGTAAGGGGGACCGGGTCGATCCTCGACTTACGCATTCTACCTCTCCGACCAACTGAGCGCC
66 GCACGCAAGGGGGACCGGGCCGATCCTCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCC
*
33334048 CGTACGCTCGTTTCGTGGGCTGGCTTAG
131 CGTACGCTCGTTTCGTGGGTTGGCTTAG
* *
33334076 GCATACAGACTTCA-TCCCAAGTCTAAG
1 GCATACGGAGTTCATTCCC-AGTCTAAG
33334103 CGTATAGAGT
Statistics
Matches: 266, Mismatches: 66, Indels: 24
0.75 0.19 0.07
Matches are distributed among these distances:
157 8 0.03
158 140 0.53
159 114 0.43
160 4 0.02
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGGCCGGACCGAGGGTTGCGGCAGTAGGATTGGCA
GCACGCAAGGGGGACCGGGCCGATCCTCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCC
CGTACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:33334287 original size:184 final size:184
Alignment explanation
Indices: 33333925--33334264 Score: 429
Period size: 184 Copynumber: 1.8 Consensus size: 184
33333915 TATGCATACG
* ** *
33333925 GAGTTCATTCCCAGTCTAAGATCAGGCCGGACCAAGGGTTGCGGTAGTAGAATTGACAGCACGTA
1 GAGTTCATTCCCAGTCTAAGATCAGGCCAGACCAAGGGTTGCGACAGTAGAATCGACAGCACGTA
*** * *
33333990 AGGGGGACCGGGTCGATCCTCGACTTACGCATTCTACCTCTCCGACCAACTGAGCGCCCGTACGC
66 AGGGGGACCGAACCGATCCTCGACTTACGCATTCTACCTCTCCGACCAACTGAGCACCCGCACGC
* *
33334055 TCGTTTCGTGGGCTGGCTTAGGCATACAGACTTCATCCCAAGTCTAAGCGTATA
131 TCGTTTCATGGGCTAGCTTAGGCATACAGACTTCATCCCAAGTCTAAGCGTATA
* * *
33334109 GAGTTCATTCCCAGTCTAAGAT-TGGACCAGACCGAGGGTTGCGACAGTAGGATCGACAGCACG-
1 GAGTTCATTCCCAGTCTAAGATCAGG-CCAGACCAAGGGTTGCGACAGTAGAATCGACAGCACGT
* * * *
33334172 CAGGGGGAACCGAACCGGTACC-C-AGCTTACGCATTCTGCCTCTCC-ACCCGACTGAGCACCCG
65 AAGGGGG-ACCGAACCGAT-CCTCGA-CTTACGCATTCTACCTCTCCGA-CCAACTGAGCACCCG
*
33334234 CACGCTCGTTTCATGGGTTAGCTTAGGCATA
126 CACGCTCGTTTCATGGGCTAGCTTAGGCATA
33334265 TGAAGTTCAT
Statistics
Matches: 132, Mismatches: 19, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
183 10 0.08
184 120 0.91
185 2 0.02
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (184 bp):
GAGTTCATTCCCAGTCTAAGATCAGGCCAGACCAAGGGTTGCGACAGTAGAATCGACAGCACGTA
AGGGGGACCGAACCGATCCTCGACTTACGCATTCTACCTCTCCGACCAACTGAGCACCCGCACGC
TCGTTTCATGGGCTAGCTTAGGCATACAGACTTCATCCCAAGTCTAAGCGTATA
Found at i:33334455 original size:26 final size:26
Alignment explanation
Indices: 33334419--33334471 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
33334409 GTTGACTTAG
*
33334419 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
33334445 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
33334471 G
1 G
33334472 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:33334754 original size:342 final size:343
Alignment explanation
Indices: 33334046--33334782 Score: 872
Period size: 342 Copynumber: 2.2 Consensus size: 343
33334036 CAACTGAGCG
* * * * * *
33334046 CCCGTACGCTCGTTTCGTGGGCTGGCTTAGGCATACAGACTTCATCCCAAGTCTAAGCGTATAGA
1 CCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACAGA
* * *
33334111 GTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGACAGTAGGATCGACAGCACGCAGG
66 GTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGAGACAGCAGGATCGACAGCACGCAGG
* * *
33334176 GGGAACCGAACCGGTACCCAGCTTACGCATTCTGCCTCTCCACCCGACTGAGCACCCGCACGCTC
131 GGGAACCGAACCGATACCCAGCTTACGCATTCTGCCTCTCCACCCGACTGAGCACCCACACGCCC
* * * *
33334241 GTTTCATGGGTTAGCTTAGGCATATGAAGTTCATTCCATGTCTAAGCTCCAGTCGGACCGAGGGT
196 ATTTCATGGGTTAGCTTAGGCATAGGAAGTTCATTCCATGTCTAAGCCCCAGTCGAACCGAGGGT
** * * * **
33334306 TGTGGCAGCAGGATCGATAGCAGGCAGAGGGGGACCGGACTGATCCCCAGCTTGTGCATTATGCC
261 TGTGGCAGCAGGATCGATAGCACACAAAGGGGGACCGGACCGATCCCCAGCCTGCACATTATGCC
** **
33334371 TTTCTGGTCGGATGGGTG
326 TTTCTGGTCGGATCAGCA
* * ** *
33334389 CCCGTATGATCGTTTTATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGA
1 CCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACAGA
*
33334454 GTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTAG-CAGCAGGATCGACAGCACGTAG
66 GTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTG-AGACAGCAGGATCGACAGCACGCAG
* *** * ** *** ** *
33334518 GGGG-ACTGGGTCGAT-CCCTGTCTTGTGCATTCTGCCTCTCCGGTCGGTTGAGCGCCCACACGC
130 GGGGAACCGAACCGATACCCAG-CTTACGCATTCTGCCTCTCCACCCGACTGAGCACCCACACGC
* * * *
33334581 CCATTTCGTGGGTTTGCTTAGGCATGGGGAGTTCATTCCATGTCTAAGCCCCAGTCGAACCGAGG
194 CCATTTCATGGGTTAGCTTAGGCATAGGAAGTTCATTCCATGTCTAAGCCCCAGTCGAACCGAGG
* * * * **
33334646 GTTGTGGCAGCGGGATCGGTAGCACACAAAGGGGGATCGGGCCGATCCCTGGCCTGCACATTATG
259 GTTGTGGCAGCAGGATCGATAGCACACAAAGGGGGACCGGACCGATCCCCAGCCTGCACATTATG
33334711 CCTCTTC-GGTC-GATTCAGCA
324 CCT-TTCTGGTCGGA-TCAGCA
* * *
33334731 CCCGTACGCTCATTTCGTGGGTTGACTTATGCATACAGAGTTCATTCCCAGT
1 CCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGT
33334783 TGAAGATCAG
Statistics
Matches: 326, Mismatches: 64, Indels: 9
0.82 0.16 0.02
Matches are distributed among these distances:
341 6 0.02
342 200 0.61
343 119 0.37
344 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (343 bp):
CCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACAGA
GTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGAGACAGCAGGATCGACAGCACGCAGG
GGGAACCGAACCGATACCCAGCTTACGCATTCTGCCTCTCCACCCGACTGAGCACCCACACGCCC
ATTTCATGGGTTAGCTTAGGCATAGGAAGTTCATTCCATGTCTAAGCCCCAGTCGAACCGAGGGT
TGTGGCAGCAGGATCGATAGCACACAAAGGGGGACCGGACCGATCCCCAGCCTGCACATTATGCC
TTTCTGGTCGGATCAGCA
Found at i:33334772 original size:159 final size:159
Alignment explanation
Indices: 33334482--33334948 Score: 444
Period size: 159 Copynumber: 2.9 Consensus size: 159
33334472 ATCGGACCAG
* ** * * * * **
33334482 ACCGAGGGTTGTAGCAGCAGGATCGACAG--CACGTAGGGGGACTGGGTCGATCCCTGTCTTGTG
1 ACCGAGGGTTGTGGCAGCAGGATCGACAGCACACAAAGGGGGACTAGGCCGATCCCTGGCCTGCA
* * * * **
33334545 CATTCTGCCTCTCCGGTCGGTTGAGCGCCCACACGCCCATTTCGTGGGTTTGCTTAGGCATGGGG
66 CATTCTGCCTCTTCGGTCGGTTAAGCGCCCGCACGCTCATTTCGTGGG-TTGCTTAGGCATACGG
*
33334610 AGTTCATTCCATGTCTAAGCCCCAG-TCGA
130 AGTTCATTCCATGTCTAAGCACCAGATCGA
* ** *
33334639 ACCGAGGGTTGTGGCAGCGGGATCGGTAGCACACAAAGGGGGA-TCGGGCCGATCCCTGGCCTGC
1 ACCGAGGGTTGTGGCAGCAGGATCGACAGCACACAAAGGGGGACT-AGGCCGATCCCTGGCCTGC
* * * * * * *
33334703 ACATTATGCCTCTTCGGTCGATTCAGCACCCGTACGCTCATTTCGTGGGTTGACTTATGCATACA
65 ACATTCTGCCTCTTCGGTCGGTTAAGCGCCCGCACGCTCATTTCGTGGGTTG-CTTAGGCATACG
* *
33334768 GAGTTCATTCCCA-GT-TGAAG-ATCAGATCGG
129 GAGTTCATT-CCATGTCT-AAGCACCAGATCGA
* * * * ** * * *
33334798 ATCGAGGGTTGTGGTAGCAGGATTGACAGCACGCAGGGGGGGACTAGGTCGATCCCTGGCTTGCG
1 ACCGAGGGTTGTGGCAGCAGGATCGACAGCACACAAAGGGGGACTAGGCCGATCCCTGGCCTGCA
* ** * *
33334863 CATTCTGCCTCTTCGATCGGCAAAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGG
66 CATTCTGCCTCTTCGGTCGGTTAAGCGCCCGCACGCTCATTTCGTGGGTT-GCTTAGGCATACGG
33334928 AGTTCATTCCATGTCTAAGCA
130 AGTTCATTCCATGTCTAAGCA
33334949 TAGGGAGTTC
Statistics
Matches: 247, Mismatches: 51, Indels: 21
0.77 0.16 0.07
Matches are distributed among these distances:
157 25 0.10
158 11 0.04
159 204 0.83
160 7 0.03
ACGTcount: A:0.18, C:0.26, G:0.31, T:0.25
Consensus pattern (159 bp):
ACCGAGGGTTGTGGCAGCAGGATCGACAGCACACAAAGGGGGACTAGGCCGATCCCTGGCCTGCA
CATTCTGCCTCTTCGGTCGGTTAAGCGCCCGCACGCTCATTTCGTGGGTTGCTTAGGCATACGGA
GTTCATTCCATGTCTAAGCACCAGATCGA
Found at i:33334956 original size:26 final size:26
Alignment explanation
Indices: 33334920--33334972 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
33334910 GTTGGCTTAG
33334920 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
* *
33334946 GCATAGGGAGTTCCTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
33334972 G
1 G
33334973 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:33335398 original size:11 final size:13
Alignment explanation
Indices: 33335373--33335404 Score: 50
Period size: 11 Copynumber: 2.6 Consensus size: 13
33335363 ATTTTGGGAC
33335373 AAAAATCTTTCTA
1 AAAAATCTTTCTA
33335386 AAAAAT-TTT-TA
1 AAAAATCTTTCTA
33335397 AAAAATCT
1 AAAAATCT
33335405 CGAACCTCAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 8 0.44
12 4 0.22
13 6 0.33
ACGTcount: A:0.53, C:0.09, G:0.00, T:0.38
Consensus pattern (13 bp):
AAAAATCTTTCTA
Found at i:33336311 original size:26 final size:26
Alignment explanation
Indices: 33336281--33336330 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
33336271 GACTTAGGCA
33336281 TACGGAGTTCATCCCCAGTCTAAGCC
1 TACGGAGTTCATCCCCAGTCTAAGCC
*
33336307 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATCCCCAGTCTAAG
33336331 ATTGGACCGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (26 bp):
TACGGAGTTCATCCCCAGTCTAAGCC
Found at i:33336676 original size:26 final size:26
Alignment explanation
Indices: 33336647--33336699 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
33336637 GTTGACTTAG
*
33336647 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* *
33336673 GCATATAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
33336699 G
1 G
33336700 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:33337188 original size:26 final size:25
Alignment explanation
Indices: 33337148--33337199 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 25
33337138 GTTGGCTTAG
*
33337148 GCATACAGAGTTCATTCAATGTCTAA
1 GCATACAGAGGTCATTCAA-GTCTAA
* *
33337174 GCATACGGAGGTCATTCCAGTCTAA
1 GCATACAGAGGTCATTCAAGTCTAA
33337199 G
1 G
33337200 ATTTTGAGCC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (25 bp):
GCATACAGAGGTCATTCAAGTCTAA
Found at i:33338196 original size:159 final size:157
Alignment explanation
Indices: 33337931--33338397 Score: 501
Period size: 159 Copynumber: 2.9 Consensus size: 157
33337921 GATCGGACTG
* ** * ** * *
33337931 GACCGAGGGTTACGACAGCAGGATCGGTAGCACGCAGGGGGGATCGGGTCGATCCCCGGCTTGCG
1 GACCGAGGGTTGCGGGAGCAGGACCGACAGCACGCAGGGGGGACCGGGTCGATCCCCGGCATGC-
* ** * *
33337996 CATTCTGCCTTTCCAACCGGCTGAGCGCCCACACGCCCATTTCGTGGGTTGGCTTAGGCATAGGG
65 CATTCTGCCTTTCCGACCGGCTGAGCGCCTGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGG
*
33338061 AGTCCATTCCATGTCTAAGCCCTA-ACCA
130 AGTTCATTCCATGTCTAAGCCC-AGACCA
*
33338089 GACCGAGGGTTGTGGGAGC-GAGACCGACAGCACGCAGAGGGGGACCGGGTCGATCCCCGGCATG
1 GACCGAGGGTTGCGGGAGCAG-GACCGACAGCACGCAG-GGGGGACCGGGTCGATCCCCGGCATG
* * * * * ** * *
33338153 CACATTATGCCTTTTCGGCCGGCTCAACGCCTGCACATTCATTTCGTGGGTTGACTTAGGCATAT
64 C-CATTCTGCCTTTCCGACCGGCTGAGCGCCTGCACGCTCATTTCGTGGGTTGGCTTAGGCATAC
*** *
33338218 GGAGTTCATTCCCAT-TCTAAAATCAGACCT
128 GGAGTTCATT-CCATGTCTAAGCCCAGACCA
* * * * *
33338248 GACCGAGGGTTGCGGTAGCAGGATCGACATCACGCAGGGGAGACCGGGTCGATCCTCGGCTTATG
1 GACCGAGGGTTGCGGGAGCAGGACCGACAGCACGCAGGGGGGACCGGGTCGATCCCCGGC--ATG
* * * *
33338313 -CATTCTGCCTCTCCGATCGGCTGAGCACCTGGACGCTCATTTCGTGGGTTGGCTTAGGCATACG
64 CCATTCTGCCTTTCCGACCGGCTGAGCGCCTGCACGCTCATTTCGTGGGTTGGCTTAGGCATACG
33338377 GAGTTCATTCCATGTCTAAGC
129 GAGTTCATTCCATGTCTAAGC
33338398 ATATGGAGTT
Statistics
Matches: 252, Mismatches: 49, Indels: 16
0.79 0.15 0.05
Matches are distributed among these distances:
157 5 0.02
158 115 0.46
159 124 0.49
160 8 0.03
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.22
Consensus pattern (157 bp):
GACCGAGGGTTGCGGGAGCAGGACCGACAGCACGCAGGGGGGACCGGGTCGATCCCCGGCATGCC
ATTCTGCCTTTCCGACCGGCTGAGCGCCTGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGA
GTTCATTCCATGTCTAAGCCCAGACCA
Found at i:33338380 original size:158 final size:158
Alignment explanation
Indices: 33337903--33338396 Score: 525
Period size: 158 Copynumber: 3.1 Consensus size: 158
33337893 AAGCATATGA
* * * **
33337903 AGTTCATTCCCA-GTCTAAGATCGGA-CTGGACCGAGGGTTACGACAGCAGGATCGGTAGCACGC
1 AGTTCATT-CCATGTCTAAGATCAGACCT-GACCGAGGGTTGCGGCAGCAGGATCGACAGCACGC
* ** * **
33337966 AGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTTTCCAACCGGCTGAGCGCCCACACG
64 AGGGGGGACCGGGTCGATCCCCGGCTTATGCATTCTGCCTTTCCGACCGGCTGAGCGCCTGCACG
* *
33338031 CCCATTTCGTGGGTTGGCTTAGGCATAGGG
129 CTCATTTCGTGGGTTGGCTTAGGCATACGG
* ** * * * *
33338061 AGTCCATTCCATGTCTAAGCCCTA-ACCAGACCGAGGGTTGTGGGAGC-GAGACCGACAGCACGC
1 AGTTCATTCCATGTCTAAGATC-AGACCTGACCGAGGGTTGCGGCAGCAG-GATCGACAGCACGC
* * * * *
33338124 AGAGGGGGACCGGGTCGATCCCCGGC--ATGCACATTATGCCTTTTCGGCCGGCTCAACGCCTGC
64 AG-GGGGGACCGGGTCGATCCCCGGCTTATG--CATTCTGCCTTTCCGACCGGCTGAGCGCCTGC
** * *
33338187 ACATTCATTTCGTGGGTTGACTTAGGCATATGG
126 ACGCTCATTTCGTGGGTTGGCTTAGGCATACGG
* * *
33338220 AGTTCATTCCCAT-TCTAAAATCAGACCTGACCGAGGGTTGCGGTAGCAGGATCGACATCACGCA
1 AGTTCATT-CCATGTCTAAGATCAGACCTGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCA
* * * * * *
33338284 GGGGAGACCGGGTCGATCCTCGGCTTATGCATTCTGCCTCTCCGATCGGCTGAGCACCTGGACGC
65 GGGGGGACCGGGTCGATCCCCGGCTTATGCATTCTGCCTTTCCGACCGGCTGAGCGCCTGCACGC
33338349 TCATTTCGTGGGTTGGCTTAGGCATACGG
130 TCATTTCGTGGGTTGGCTTAGGCATACGG
33338378 AGTTCATTCCATGTCTAAG
1 AGTTCATTCCATGTCTAAG
33338397 CATATGGAGT
Statistics
Matches: 270, Mismatches: 53, Indels: 26
0.77 0.15 0.07
Matches are distributed among these distances:
157 9 0.03
158 131 0.49
159 122 0.45
160 8 0.03
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.23
Consensus pattern (158 bp):
AGTTCATTCCATGTCTAAGATCAGACCTGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAG
GGGGGACCGGGTCGATCCCCGGCTTATGCATTCTGCCTTTCCGACCGGCTGAGCGCCTGCACGCT
CATTTCGTGGGTTGGCTTAGGCATACGG
Found at i:33338419 original size:26 final size:26
Alignment explanation
Indices: 33338370--33338422 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
33338360 GTTGGCTTAG
*
33338370 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATCCCATGTCTAA
*
33338396 GCATATGGAGTTCATCCCCA-GTCTAA
1 GCATACGGAGTTCAT-CCCATGTCTAA
33338422 G
1 G
33338423 ATCAAATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCATGTCTAA
Found at i:33338816 original size:26 final size:26
Alignment explanation
Indices: 33338786--33338838 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33338776 GTTGGCTTAG
*
33338786 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGAAGTTCATTCCTA-GTCTAA
33338812 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCTAGTCTAA
33338838 G
1 G
33338839 ATCAGACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCTAGTCTAA
Found at i:33339946 original size:157 final size:158
Alignment explanation
Indices: 33339700--33340000 Score: 394
Period size: 157 Copynumber: 1.9 Consensus size: 158
33339690 ATCGGACCGA
* * * * * * *
33339700 GGGTTGCGATAGCAGGATCGACAGCACGCAGGGGGGACCGTGTCGATCCCTGGCTTGCGCATTCT
1 GGGTTGCGACAACAGGATCAACAGCACGCAGGGGGGACCGAGTCGATCCCCGGCTTACACATTCT
* * * *
33339765 GCCACTCCCGTCGGCTGTAGGCCCGCATGCCCGTTTCGTGGGTTGGCTTA-GCATAGGGAGTTCA
66 GCCACTCCCGTCGACTGTAGGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCA
33339829 TTCCATGTCTAAGCCCTAGTCGAATCAG
131 TTCCATGTCTAAGCCCTAGTCGAATCAG
* *
33339857 GGGTTGCGACAACAGGATCAACAGCACGCAGGGGGGATCGAG-CTGATCCCCGGCTTACATATTC
1 GGGTTGCGACAACAGGATCAACAGCACGCAGGGGGGACCGAGTC-GATCCCCGGCTTACACATTC
* * **
33339921 TGCCTCT-TCGATCGACTG-AGCGCCCGCACGTTCGTTTCGTGGGTTGGCTTAGGCATACGAAGT
65 TGCCACTCCCG-TCGACTGTAG-GCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATACGAAGT
33339984 TCATTCCATGTCTAAGC
128 TCATTCCATGTCTAAGC
33340001 TTACAGAGTT
Statistics
Matches: 123, Mismatches: 17, Indels: 7
0.84 0.12 0.05
Matches are distributed among these distances:
156 5 0.04
157 92 0.75
158 26 0.21
ACGTcount: A:0.18, C:0.28, G:0.30, T:0.24
Consensus pattern (158 bp):
GGGTTGCGACAACAGGATCAACAGCACGCAGGGGGGACCGAGTCGATCCCCGGCTTACACATTCT
GCCACTCCCGTCGACTGTAGGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCA
TTCCATGTCTAAGCCCTAGTCGAATCAG
Found at i:33340537 original size:354 final size:349
Alignment explanation
Indices: 33339606--33340589 Score: 978
Period size: 354 Copynumber: 2.8 Consensus size: 349
33339596 TGAGCGCCTG
* * * *
33339606 CACGCTCATTTCATGGGTTGACTTAGGTATACAGAGTTCATCCGCAGTCTAAGCATACGGAGTTC
1 CACGCTCATTTCGTGGGTTGACTTAGGCATACAAAGTTCATCCCCAGTCTAAGCATACGGAGTTC
* * * * ** *
33339671 ATTCCTAGTCTAAGATCAGATCGGACCGAGGGTTGCGATAGCAGGATCGACAGCACGCAGGGGGG
66 ATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGTAGCAGGATCGGTAGCACGTA-GGGGG
* * * * * *
33339736 ACCGTGTCGATCCCTGGCTTGCGCATTCTGCCACTCCCGTCGGCTGTAGGCCCGCATGCCCGTTT
130 ATCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCCGTCGGCTG-A-GCCCGCATGCCCGTTT
*
33339801 CGTGGGTTGGCTTA-GCATAGGGAGTTCATTCCATGTCTAAGCCCTAGTC-GAATC-AGGGGTTG
193 CGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGTCAG-ACCGA-GGGTTG
* *
33339863 C-G-A-C---A--ACA--GGATCAACAGCACGCAGGGGGGATCGAGCTGATCCCCGGCTTACATA
256 CGGCAGCAGGACGACAGCGGATCAACAGCACGCAGGGGGGATAGAGCTGATCCCCAGCTTACATA
* * * *
33339918 TTCTGCCTCTTCGATCGACTGAGCGCCCG
321 TTATGCCTCTTCGATCGACTAAGAGCCCA
* * * * * * *
33339947 CACGTTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCAT-TCCATGTCTAAGCTTACAGAGTT
1 CACGCTCATTTCGTGGGTTGACTTAGGCATACAAAGTTCATCCCCA-GTCTAAGCATACGGAGTT
33340011 CATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGTAGCAGGACCAGTAGCAGGATCGACA
65 CATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGTAGCAGG---A-T--C-GG-T----A
* * * * * *
33340076 GCACATAAGGGGGATCGGGCCGATCCTC-AGCTTGTGCATTCTGCCT-TTCTGACTGGCTGAGCG
118 GCACGT-AGGGGGATCGGGCCGATCCCCGA-CTTGCGCATTCTGCCTCTCCCGTC-GGCTGA--G
* * * * * * *
33340139 CCCGCACGCTCGTTTCATGGGTTGGATTAGGCATACGAAGTTCATTCCATGTCTAACCCCTAGTC
178 CCCGCATGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGTC
* *
33340204 AGACCGAGGGTTGCGGCAGCAGGACCGACAGCGGGATCGACAGCATGCAGAGGGGGACTAG-GCT
243 AGACCGAGGGTTGCGGCAGCAGGA-CGACAGC-GGATCAACAGCACGCAG-GGGGGA-TAGAGCT
** * * *
33340268 GATCCTTAGCTTGCGTATTATGCCTCTTCGGTCTG-CTAAGAGCCCA
304 GATCCCCAGCTTACATATTATGCCTCTTCGATC-GACTAAGAGCCCA
* * *
33340314 CACGCTCATTTCGTGGGTTGACTTAGCCGTACAAACTTCATCCCCAGTCTAAGCATACGGAGTTC
1 CACGCTCATTTCGTGGGTTGACTTAGGCATACAAAGTTCATCCCCAGTCTAAGCATACGGAGTTC
* * * *
33340379 ATTCCCAGTCTAAGATCGGACCAAACCGAGGGTTACGGTAGTAGGATCGGTAGCACGTAGGGGGA
66 ATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGTAGCAGGATCGGTAGCACGTAGGGGGA
* * *
33340444 TCGGGCCAATCCCCGACTTGCGCATTTTGCCTCTCCGGTCGGCTGAGCACCAGCATGCCCGTTTC
131 TCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCCGTCGGCTGAGC-CC-GCATGCCCGTTTC
* * * *
33340509 GTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCAAGCCAGACCGAGAGTTGTGG
194 GTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGTCAGACCGAGGGTTGCGG
33340574 CAGCAGGACTGACAGC
259 CAGCAGGAC-GACAGC
33340590 ACATAAAGGG
Statistics
Matches: 517, Mismatches: 85, Indels: 69
0.77 0.13 0.10
Matches are distributed among these distances:
340 2 0.00
341 92 0.18
344 1 0.00
345 1 0.00
347 1 0.00
348 1 0.00
352 7 0.01
353 68 0.13
354 162 0.31
355 14 0.03
356 1 0.00
357 1 0.00
359 1 0.00
360 3 0.01
361 1 0.00
363 4 0.01
364 1 0.00
366 15 0.03
367 135 0.26
368 6 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.24
Consensus pattern (349 bp):
CACGCTCATTTCGTGGGTTGACTTAGGCATACAAAGTTCATCCCCAGTCTAAGCATACGGAGTTC
ATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGTAGCAGGATCGGTAGCACGTAGGGGGA
TCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCCGTCGGCTGAGCCCGCATGCCCGTTTCGT
GGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGTCAGACCGAGGGTTGCGGCA
GCAGGACGACAGCGGATCAACAGCACGCAGGGGGGATAGAGCTGATCCCCAGCTTACATATTATG
CCTCTTCGATCGACTAAGAGCCCA
Found at i:33340719 original size:26 final size:26
Alignment explanation
Indices: 33340682--33340734 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
33340672 GTTGACATAT
33340682 GCATACGAAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCATGTCTAA
* *
33340708 GCATACGGAGTTCATTCCGTGTCTAA
1 GCATACGAAGTTCATTCCATGTCTAA
33340734 G
1 G
33340735 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATGTCTAA
Found at i:33342694 original size:12 final size:12
Alignment explanation
Indices: 33342677--33342720 Score: 61
Period size: 12 Copynumber: 3.7 Consensus size: 12
33342667 CACACAGAGG
33342677 GGGATCGACAGC
1 GGGATCGACAGC
*
33342689 GGGATCGGCAGC
1 GGGATCGACAGC
* *
33342701 GGGATTGGCAGC
1 GGGATCGACAGC
33342713 GGGATCGA
1 GGGATCGA
33342721 TAGCACATGG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 28 1.00
ACGTcount: A:0.20, C:0.20, G:0.48, T:0.11
Consensus pattern (12 bp):
GGGATCGACAGC
Found at i:33344798 original size:26 final size:26
Alignment explanation
Indices: 33344769--33344819 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
33344759 GTTGACTTAG
33344769 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
33344795 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATCCCCAGTCTA
33344820 TGATCGGATC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:33345182 original size:159 final size:159
Alignment explanation
Indices: 33344934--33345296 Score: 392
Period size: 159 Copynumber: 2.3 Consensus size: 159
33344924 CGCATGCCCG
* ** * ** *
33344934 TTTCTTGGGTTGGCTTAGGCAT-CGGGAGTTCATTCAATGTCTAAGCCCCAG-GCGGATCGAGGG
1 TTTCATGGGTTGAATTAGGCATAC-GGAGTTCATTCCATGTCTAAG-ATCAGACCGGATCGAGGG
* * * *
33344997 TTGTGGCAGCGGGACCGACAGCATGCAGAGGGG-GACCGGGTCGATCCCCGGCTTGCGCATTATG
64 TTGCGGCAGCAGGACCGACAGCATGCAG-GGGGTGACCGGGTCAATCCCCGACTTGCGCATTATG
** * *
33345061 CCACTGTGGCCAGCTTAGCACTCGCACGCTCA
128 CCACTCCGGCCAGCTGAGCACCCGCACGCTCA
*
33345093 TTTCGTGGGTTGAATTAGGCATACGGAGTTCATTCCCA-GTCTAAGATCAGACCGGATCGAGGGT
1 TTTCATGGGTTGAATTAGGCATACGGAGTTCATT-CCATGTCTAAGATCAGACCGGATCGAGGGT
* * ** * *
33345157 TGCGGTAGCAGGATCGACAGCATGCAGGGGGTGGTCGGGTCAATCCTCGACTTGCGCATTCTGCC
65 TGCGGCAGCAGGACCGACAGCATGCAGGGGGTGACCGGGTCAATCCCCGACTTGCGCATTATGCC
* * ** * *
33345222 TCTCCGTCTGGCTGAGCGCCCGCACGCTCG
130 ACTCCGGCCAGCTGAGCACCCGCACGCTCA
**
33345252 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
1 TTTCATGGGTTGAATTAGGCATACGGAGTTCATTCCATGTCTAAG
33345297 CATACGGAGT
Statistics
Matches: 169, Mismatches: 30, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
158 10 0.06
159 156 0.92
160 3 0.02
ACGTcount: A:0.18, C:0.26, G:0.32, T:0.25
Consensus pattern (159 bp):
TTTCATGGGTTGAATTAGGCATACGGAGTTCATTCCATGTCTAAGATCAGACCGGATCGAGGGTT
GCGGCAGCAGGACCGACAGCATGCAGGGGGTGACCGGGTCAATCCCCGACTTGCGCATTATGCCA
CTCCGGCCAGCTGAGCACCCGCACGCTCA
Found at i:33346025 original size:26 final size:26
Alignment explanation
Indices: 33345989--33346041 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
33345979 GTTGACTTAG
*
33345989 GCATACAGAGTTCATCCCCCGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
33346015 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
33346041 G
1 G
33346042 ATCGGACCGT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.32, G:0.17, T:0.23
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:33346507 original size:26 final size:26
Alignment explanation
Indices: 33346477--33346529 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
33346467 GTTGGCTTAG
33346477 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
33346503 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
33346529 G
1 G
33346530 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:33347392 original size:26 final size:26
Alignment explanation
Indices: 33347356--33347408 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33347346 GTGGGCTTAG
33347356 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
*
33347382 GCATACGGAGTTCGTTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
33347408 G
1 G
33347409 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:33348393 original size:158 final size:158
Alignment explanation
Indices: 33347936--33348415 Score: 450
Period size: 158 Copynumber: 3.0 Consensus size: 158
33347926 TAAGCATATA
* **
33347936 GAGTTCATTCCTAGTCTAAGATCGGA-TCAGACCGAGGGTTGCAATAGCAGGATCGACAGCACGT
1 GAGTTCATTCCTAGTCTAAGATCAGACT-AGACCGAGGGTTGCAGCAGCAGGATCGACAGCACGT
* * * * * * * * *
33348000 AGTGGGGACCGAGCTGAT-CCTCGGCTTGCGCATTTTGCCTCTCTGACCGACTGGGTGCCCGGAC
65 AGAGGGGACCGGGCTGATCCCT-GACTTGCGCATTATGCCTCTCCGATCGGCTGAGTGCCCGCAC
*
33348064 GCTCATTCCGTGGGTT-AGCTTAGGCAT-CG
129 GCTCATTACGTGGGTTGA-CTTAGGCATACG
** * * * ** * *
33348093 TGAGTTCATTCC-ATGTCTAAGCCCCAGCCGA-ACCAAGGGTTGTGGCAGCGGGACCGACAGCAC
1 -GAGTTCATTCCTA-GTCTAAG-ATCAGACTAGACCGAGGGTTGCAGCAGCAGGATCGACAGCAC
* * * * * ** * *
33348156 ATAGAAGGGGACCGGGCTGTTCCCTGACTTGCGCATTATGCCTCTCCGGTCAGCTCAACGCTCGT
63 GTAG-AGGGGACCGGGCTGATCCCTGACTTGCGCATTATGCCTCTCCGATCGGCTGAGTGCCCGC
33348221 ACGCTCATTACGTGGGTTGACTTAGGCATACG
127 ACGCTCATTACGTGGGTTGACTTAGGCATACG
* * * *
33348253 GAGTTCATTCCTAGTCTAAGATTAGACTAGACCGAGAGTTGCAGCAGCAGGATCGATAGTACGTA
1 GAGTTCATTCCTAGTCTAAGATCAGACTAGACCGAGGGTTGCAGCAGCAGGATCGACAGCACGTA
* * * * * *
33348318 GGGGGGACCGGGCCGATCCCTAACTTGCGCATTCTGCCTCTCCGATCGGTTGAGTGCCCGCACGA
66 GAGGGGACCGGGCTGATCCCTGACTTGCGCATTATGCCTCTCCGATCGGCTGAGTGCCCGCACGC
* * * *
33348383 TCGTTTCGTGGGTTGGCTTAGGCATACA
131 TCATTACGTGGGTTGACTTAGGCATACG
33348411 GAGTT
1 GAGTT
33348416 TGTTCCATGT
Statistics
Matches: 251, Mismatches: 62, Indels: 18
0.76 0.19 0.05
Matches are distributed among these distances:
157 1 0.00
158 129 0.51
159 114 0.45
160 7 0.03
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (158 bp):
GAGTTCATTCCTAGTCTAAGATCAGACTAGACCGAGGGTTGCAGCAGCAGGATCGACAGCACGTA
GAGGGGACCGGGCTGATCCCTGACTTGCGCATTATGCCTCTCCGATCGGCTGAGTGCCCGCACGC
TCATTACGTGGGTTGACTTAGGCATACG
Found at i:33349470 original size:159 final size:158
Alignment explanation
Indices: 33349154--33349657 Score: 488
Period size: 158 Copynumber: 3.2 Consensus size: 158
33349144 CCCAGTCTGA
* * * * * *
33349154 GCATACGGAGTTCATTCCCA-ATCTAAG-A-TCGGATCGGACCGAGGGTTGCGGCAGCAGGATCG
1 GCATACGGAGTTCATT-CCATGTCTAAGCACT-AGACCGGACTGAGGGTTGTGGCAGCAGGATAG
* * * * *
33349216 ACAGCACGCA-AGGGGGACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCAGTCGACTGAG
64 -CAGCACGCAGAGGGGGATCGGGCTGATCCCTGGCTTGCGCATTCTGCCTCTCGACT-GGCTGAG
* *
33349280 CACCCGCATGC-CTGTTTCGTGGGTTGGCTTAG
127 CGCCCGCATGCTC-GTTTCATGGGTTGGCTTAG
* * *
33349312 GCATAGGGAGTTCATTCCATGTCTAAGCACTAG-CCGGACTGAGGGTTGTGGCAACGGGATAGGC
1 GCATACGGAGTTCATTCCATGTCTAAGCACTAGACCGGACTGAGGGTTGTGGCAGCAGGATA-GC
* * * * * *
33349376 AGCACGCAGAGGGGGATCGGGTTGATCCCTGACTTGTGCATTATGCCTTTTCGACTGGCTCAGCG
65 AGCACGCAGAGGGGGATCGGGCTGATCCCTGGCTTGCGCATTCTGCC-TCTCGACTGGCTGAGCG
* *
33349441 CCCGCACGCTCGTTTCATGGGTTGACTTAG
129 CCCGCATGCTCGTTTCATGGGTTGGCTTAG
* * * * * *
33349471 GCATACGAAGTTCATTCCCAT-TCTAAG-ATTGGACTGGACTGAGTGTTGTAGCAGCAGGATTA-
1 GCATACGGAGTTCATT-CCATGTCTAAGCACTAGACCGGACTGAGGGTTGTGGCAGCAGGA-TAG
* * * * * * *
33349533 CAGCATGTAG-GAGGGGATCGGGCCGATCCCTGGCTTACGCATTCTACCTCTCTGACCGGTTGAG
64 CAGCACGCAGAG-GGGGATCGGGCTGATCCCTGGCTTGCGCATTCTGCCTCTC-GACTGGCTGAG
* *
33349597 TGCCCGCATGCTCGTTTCATGGGTTGGCTTTG
127 CGCCCGCATGCTCGTTTCATGGGTTGGCTTAG
33349629 GCATACGGAGTTCATTCCATGTCTAAGCA
1 GCATACGGAGTTCATTCCATGTCTAAGCA
33349658 TACAGAGTTC
Statistics
Matches: 281, Mismatches: 51, Indels: 27
0.78 0.14 0.08
Matches are distributed among these distances:
157 11 0.04
158 149 0.53
159 108 0.38
160 13 0.05
ACGTcount: A:0.19, C:0.25, G:0.30, T:0.25
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGCACTAGACCGGACTGAGGGTTGTGGCAGCAGGATAGCA
GCACGCAGAGGGGGATCGGGCTGATCCCTGGCTTGCGCATTCTGCCTCTCGACTGGCTGAGCGCC
CGCATGCTCGTTTCATGGGTTGGCTTAG
Found at i:33351644 original size:25 final size:25
Alignment explanation
Indices: 33351598--33351651 Score: 74
Period size: 25 Copynumber: 2.2 Consensus size: 25
33351588 ATCTGGTATG
33351598 ATGCTAGACTGGGAATGAACTCCAT
1 ATGCTAGACTGGGAATGAACTCCAT
* *
33351623 ATGCTTAGACTGGG-ATGCACTCCGT
1 ATGC-TAGACTGGGAATGAACTCCAT
33351648 ATGC
1 ATGC
33351652 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
25 17 0.65
26 9 0.35
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (25 bp):
ATGCTAGACTGGGAATGAACTCCAT
Found at i:33352705 original size:26 final size:26
Alignment explanation
Indices: 33352676--33352728 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
33352666 CTGATCCGAT
33352676 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
33352702 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
33352728 C
1 C
33352729 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:33353210 original size:159 final size:157
Alignment explanation
Indices: 33352701--33353362 Score: 553
Period size: 159 Copynumber: 4.2 Consensus size: 157
33352691 AACTCTGTAT
* * * * ** * *
33352701 GCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCATGAAATGAGCGTATGGGTGCTCAA
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* * * * **
33352766 CCGGCCAGAGAGGCATAAATGCGTATA-CCGAGGATCAGCCCGGTTCCCCTCT-GTATGCTACCG
66 CCGGCCGGAGAGGCA-GAATGCGCA-AGCCGAGGATCGGCCCGG-TCCCC-CTAGCGTGCTACCG
* * * * * *
33352829 ATCCTGCTGCCACAACCCTGGGTCCGACTGGG
127 ATCCTACTACCACAACCCTCGGTCTGGCT-GA
* * * * *
33352861 GTTTAGACAT-GGAATGAACTCCGTATACCTAAGCCAACCCATGAAATGAGCATGGGGGCGCTCA
1 GCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCA
* * * * * ** *
33352925 GCTGGCCGGAGAGGTAGAATGCGTAAGCCGGGGATCGGCTCGGTTCCCCCTA-CGTGCTGTCAAT
65 GCCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGG-TCCCCCTAGCGTGCTACCGAT
* ** * *
33352989 CCTGCTACCGTAACCCTCGATCTGGTTTGA
129 CCTACTACCACAACCCTCGGTCTGG-CTGA
* * * * * * *
33353019 TCTTAGATTGGGAGTGAACTCCGTATGCCTAAGTCAACACACGAAATGAGTGTGCGGGCGCTGAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* * * * *
33353084 CTGGCCGGAGAGGCATAATGTGCAAGCCTAGGATCGGCCCGATCCCCCTCAGCGTGCTACCGATC
66 CCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGGTCCCCCT-AGCGTGCTACCGATC
* * *
33353149 CCACTGCCACAACCCTCGGTCTGGCTAGG
130 CTACTACCACAACCCTCGGTCTGGCT-GA
* * * * *
33353178 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTGCGGGTGCTCA
1 GCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCA
** * * * * *
33353242 GCCGATCGGAGAGGTAGAATGCGCAAGCCGAGGATCGACCTGGTCCCCCT-GTGTGCTATCGATC
65 GCCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGGTCCCCCTAGCGTGCTACCGATC
* * *
33353306 CTACTATCGCAACCCTCAGTCTGGTCTGA
130 CTACTACCACAACCCTCGGTCTGG-CTGA
*
33353335 TCTTAGACTGGGAATGAACTCCGTATGC
1 GCTTAGACTGGGAATGAACTCCGTATGC
33353363 TTAGACTGGG
Statistics
Matches: 399, Mismatches: 92, Indels: 25
0.77 0.18 0.05
Matches are distributed among these distances:
156 1 0.00
157 64 0.16
158 118 0.30
159 149 0.37
160 66 0.17
161 1 0.00
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (157 bp):
GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
CCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGGTCCCCCTAGCGTGCTACCGATCC
TACTACCACAACCCTCGGTCTGGCTGA
Found at i:33353372 original size:26 final size:26
Alignment explanation
Indices: 33353336--33353387 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
33353326 CTGGTCTGAT
33353336 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
33353362 CTTAGACTGGGGATTACCTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
33353388 TCAAAGTCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:33354662 original size:26 final size:26
Alignment explanation
Indices: 33354611--33354663 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
33354601 TTGGTCCAAT
*
33354611 CTTAGACTGAGAATGAACTCTTTATG
1 CTTAGACTGAGAATGAACTCTGTATG
33354637 CTTAGACATG-GAATGAACT-TCGTATG
1 CTTAGAC-TGAGAATGAACTCT-GTATG
33354663 C
1 C
33354664 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 1 0.04
26 21 0.88
27 2 0.08
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.32
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCTGTATG
Found at i:33355030 original size:159 final size:158
Alignment explanation
Indices: 33354636--33355082 Score: 449
Period size: 159 Copynumber: 2.8 Consensus size: 158
33354626 AACTCTTTAT
* * * *
33354636 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAAC-GAGCATGCAGGCGCTCA
1 GCTTAGACATGGAATGAAC-TCTTATGCCTAAGCCAACCCACGAAACAGAGCATGCGGGCACTCA
* * * * * * *
33354700 ATCGGCTGGAGAGGCAGAATGCCCAAGCCAGGGATCGACCTGGTCCCCCCCTGCGAGCTATCGAT
65 ACCGGCTGGAGAGGCAGAATGCGCAAGCCGGGGATTGGCCTGGT-CCCCCCTGCGTGCTACCGAT
** * ** *
33354765 CCTGCTATCGTAACCCTCGGTTCGGTCTGA
129 CCCACTACCACAACCCTCGGTCCGGTCTGA
* ** *
33354795 TCTTAGAC-TGGGAATGAACTCTGTATGCCTAA-CTCAACCCACGAAAC-GAGTGTTCGGGCACT
1 GCTTAGACAT-GGAATGAACTCT-TATGCCTAAGC-CAACCCACGAAACAGAGCATGCGGGCACT
* * * *
33354857 -AAGCCGACTGGAGAGGCAAAATACGCAAGCCGGGGATTGGCCTAGTCCCCCTCTGCGTGCTACC
63 CAA-CCGGCTGGAGAGGCAGAATGCGCAAGCCGGGGATTGGCCTGGTCCCCC-CTGCGTGCTACC
*
33354921 GATCCCACTACCACAACCCTCGGTCCGG-CTAGG
126 GATCCCACTACCACAACCCTCGGTCCGGTCT-GA
*
33354954 GCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACCAAACAG-GCATGCGGGCACTCA
1 GCTTAGACATGGAATGAACT-CTTATGCCTAAGCCAACCCACGAAACAGAGCATGCGGGCACTCA
** * * * * * *
33355018 ACCGGCCAGAGAGGCAGAATGCGTAAGTCGGGGATTAGCCCGGTCCCCCCTGTGTGCTGCCGATC
65 ACCGGCTGGAGAGGCAGAATGCGCAAGCCGGGGATTGGCCTGGTCCCCCCTGCGTGCTACCGATC
33355083 TTAGACTGCG
Statistics
Matches: 234, Mismatches: 43, Indels: 23
0.78 0.14 0.08
Matches are distributed among these distances:
158 27 0.12
159 200 0.85
160 7 0.03
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCTTATGCCTAAGCCAACCCACGAAACAGAGCATGCGGGCACTCAA
CCGGCTGGAGAGGCAGAATGCGCAAGCCGGGGATTGGCCTGGTCCCCCCTGCGTGCTACCGATCC
CACTACCACAACCCTCGGTCCGGTCTGA
Done.