Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 365 of 402
Found at i:33355342 original size:26 final size:27
Alignment explanation
Indices: 33355295--33355348 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 27
33355285 TCTGATCTTT
*
33355295 GACTGGGAATGTACTCCATATG-CTTA
1 GACTGGGAATGAACTCCATATGCCTTA
* * *
33355321 GACTTGGAATGAACTTCGTATGCCTTA
1 GACTGGGAATGAACTCCATATGCCTTA
33355348 G
1 G
33355349 CCAACCCATA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
26 18 0.78
27 5 0.22
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.31
Consensus pattern (27 bp):
GACTGGGAATGAACTCCATATGCCTTA
Found at i:33355995 original size:26 final size:26
Alignment explanation
Indices: 33355959--33356011 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
33355949 CTGGTCCAAT
33355959 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
33355985 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
33356011 C
1 C
33356012 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:33357140 original size:26 final size:26
Alignment explanation
Indices: 33357111--33357163 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
33357101 CCGGTCTGAT
* *
33357111 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAACGAAATCCGTATG
33357137 CTTAGACATGGAACGAAATCCGTATG
1 CTTAGACATGGAACGAAATCCGTATG
33357163 C
1 C
33357164 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACATGGAACGAAATCCGTATG
Found at i:33359151 original size:26 final size:26
Alignment explanation
Indices: 33359110--33359165 Score: 80
Period size: 26 Copynumber: 2.2 Consensus size: 26
33359100 TGGGTTTGCT
33359110 TAAGCATACGATGTTCATT-CCATGTC
1 TAAGCATACGATGTTCATTCCCA-GTC
33359136 TAAGCATACGGA-GTTCATTCCCAGTC
1 TAAGCATAC-GATGTTCATTCCCAGTC
33359162 TAAG
1 TAAG
33359166 ATCAGACTGG
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
26 23 0.82
27 5 0.18
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.30
Consensus pattern (26 bp):
TAAGCATACGATGTTCATTCCCAGTC
Found at i:33360007 original size:159 final size:159
Alignment explanation
Indices: 33359726--33360034 Score: 342
Period size: 159 Copynumber: 1.9 Consensus size: 159
33359716 GCCCTAGTCA
* * * * *
33359726 GACCGAGGGTTGTGGCAGTGGGATCGACAGCAGTTAGAGGGGGACCGAGCGGATCCCCGGCTTGC
1 GACCGAGAGTTGCGGCAGTAGGATCGACAGCAGTTAGAGGGGGACCGAGCGGATCCCCAGCTTAC
* * * *
33359791 ACATTATGCCTCTCCGATCGGCTCAGCGCCCGAACGCTCATTTCATGGGATGACTTAGGCAGACG
66 ACATTATACCTCTCCGACCGACTCAGCACCCGAACGCTCATTTCATGGGATGACTTAGGCAGACG
33359856 AAATTCATTCCCA-GTCTAAGATCTGACCG
131 AAATTCATT-CCATGTCTAAGATCTGACCG
33359885 GACCGAGAGTTGCGGCAGTAGGATCGACAGCACG-TAG-GAGGGGACC-AG-GTCGATCCCCAGC
1 GACCGAGAGTTGCGGCAGTAGGATCGACAGCA-GTTAGAG-GGGGACCGAGCG--GATCCCCAGC
* * * * ** * *
33359946 TTACACATTCTACCTCTCGGACCGACTGAGCACCCGTACGCTTGTTTCGTGGG-TTAGCTTAGGC
62 TTACACATTATACCTCTCCGACCGACTCAGCACCCGAACGCTCATTTCATGGGATGA-CTTAGGC
* * *
33360010 ATACGGAGTTCATTCCATGTCTAAG
126 AGACGAAATTCATTCCATGTCTAAG
33360035 CATACGGAGT
Statistics
Matches: 124, Mismatches: 20, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
157 1 0.01
158 8 0.06
159 114 0.92
160 1 0.01
ACGTcount: A:0.22, C:0.27, G:0.29, T:0.22
Consensus pattern (159 bp):
GACCGAGAGTTGCGGCAGTAGGATCGACAGCAGTTAGAGGGGGACCGAGCGGATCCCCAGCTTAC
ACATTATACCTCTCCGACCGACTCAGCACCCGAACGCTCATTTCATGGGATGACTTAGGCAGACG
AAATTCATTCCATGTCTAAGATCTGACCG
Found at i:33360037 original size:26 final size:26
Alignment explanation
Indices: 33360008--33360060 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
33359998 GTTAGCTTAG
33360008 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
33360034 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
33360060 G
1 G
33360061 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:33360254 original size:26 final size:26
Alignment explanation
Indices: 33360218--33360269 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
33360208 GTTGACTTGG
33360218 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
33360244 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
33360270 AATCAAACCG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:33360431 original size:26 final size:26
Alignment explanation
Indices: 33360402--33360454 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33360392 GTTGGCTTAG
33360402 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
33360428 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
33360454 G
1 G
33360455 ACTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:33361550 original size:26 final size:26
Alignment explanation
Indices: 33361520--33361616 Score: 158
Period size: 26 Copynumber: 3.7 Consensus size: 26
33361510 AACCGCAAAA
*
33361520 AGTTCATCCCCAGTCTAAGCATATGG
1 AGTTCATCCCCAGTCTAAGCATACGG
*
33361546 AGTTCATCCTCAGTCTAAGCATACGG
1 AGTTCATCCCCAGTCTAAGCATACGG
33361572 AGTTCATCCCCAGTCTAAGCATACGG
1 AGTTCATCCCCAGTCTAAGCATACGG
* *
33361598 AGTTCATTCCTAGTCTAAG
1 AGTTCATCCCCAGTCTAAG
33361617 ATCGAATTGG
Statistics
Matches: 66, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 66 1.00
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.28
Consensus pattern (26 bp):
AGTTCATCCCCAGTCTAAGCATACGG
Found at i:33361953 original size:159 final size:158
Alignment explanation
Indices: 33361590--33361968 Score: 393
Period size: 159 Copynumber: 2.4 Consensus size: 158
33361580 CCCAGTCTAA
* * * * **
33361590 GCATACGGAGTTCATTCCTAGTCTAAGATCGAATTGGATCGAGGGTTGTGGTAGCAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAATTGGATCAAGGGTTGTGGCAGCAGGACCAACA
* * * * *
33361655 GCACGTAAAGGGGACTAGGCCGATCCCCGGCTTGTGCATTTTGCCTCTTCGATCGACTGAGTGCC
66 GCACGCAAAGGGGACTAGGCCGATCCCCGGCTTATGCATTTTACCTCTCCGACCGACTGAGTGCC
* *
33361720 TGCACGCCCATTTCGTGGGTTGGCTTAG
131 CGCACGCCCATTTCGTGGATTGGCTTAG
* ** * * * *
33361748 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAGTTGGATTAAGGGTTGTGGCAGTAGGACCAAC
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCGAATTGGATCAAGGGTTGTGGCAGCAGGACCAAC
* * * ** **
33361812 AGCACGCAGAGGGGGACTGGGTCGATCCTTGGCTTATGCATTTTACCTCTCC-AGCCGGTTGAGT
65 AGCACGCA-AAGGGGACTAGGCCGATCCCCGGCTTATGCATTTTACCTCTCCGA-CCGACTGAGT
* * *
33361876 GCCCGCACGCTCGTTTTGTGGATTGGCTTAG
128 GCCCGCACGCCCATTTCGTGGATTGGCTTAG
* ** * * *
33361907 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGTTGTAGCAGGACCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAATTGGATCAAGGGTTGTGGCAGCAGGACCA
33361969 GCAACGAGAT
Statistics
Matches: 174, Mismatches: 43, Indels: 7
0.78 0.19 0.03
Matches are distributed among these distances:
157 2 0.01
158 56 0.32
159 113 0.65
160 3 0.02
ACGTcount: A:0.20, C:0.23, G:0.31, T:0.26
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGAATTGGATCAAGGGTTGTGGCAGCAGGACCAACA
GCACGCAAAGGGGACTAGGCCGATCCCCGGCTTATGCATTTTACCTCTCCGACCGACTGAGTGCC
CGCACGCCCATTTCGTGGATTGGCTTAG
Found at i:33362147 original size:171 final size:171
Alignment explanation
Indices: 33361876--33362263 Score: 399
Period size: 171 Copynumber: 2.3 Consensus size: 171
33361866 CCGGTTGAGT
* * * * *
33361876 GCCCGCACGCTCGTTTTGTGGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
1 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACCGAGTTCATTCACAGTCTAAGACCGGAC
* * * * * * *** *
33361941 CGGACCAAGGGTTGTTGTAGCAGGACCAGCAACGAGATCGATACCATGTAGGGAGGGATCGGGCT
66 CGAACCAAGGGTTGTGGTAACAGGACCAGCAACGAGATAGACAACACACAGAGAGGGATCGGGCT
* * *
33362006 GATCCCCGGCTTGTGCATTCTACCTCTCCGGCTAG-CTGAAC
131 GATCCCCGACTTGTACATTATACCTCTCCGGC-AGACTGAAC
** * *
33362047 GCCCGCACGCTCGTTTCACGGGTTGGCTTAGGCATACCGAGTTCATT-ACATGTCTACGCCCTGG
1 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACCGAGTTCATTCACA-GTCTAAGACC-GG
* * *
33362111 -CCGAACCGAGGGTTGTGGTAACAGGA-CTGACAACGAGATAGACAACACACAGAGTGGGATCGG
64 ACCGAACCAAGGGTTGTGGTAACAGGACCAG-CAACGAGATAGACAACACACAGAGAGGGATCGG
* * * * *
33362174 GCTGATCCCTGACTTGTATATTATGCCTCTCTGGCCGACTGAAC
128 GCTGATCCCCGACTTGTACATTATACCTCTCCGGCAGACTGAAC
* * *
33362218 ACCCACACGCTCGTTTCGTGGGTTGACTTAGGCATA-CGACGTTCAT
1 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACCGA-GTTCAT
33362264 CCCCAGTCAT
Statistics
Matches: 177, Mismatches: 35, Indels: 10
0.80 0.16 0.05
Matches are distributed among these distances:
170 8 0.05
171 167 0.94
172 2 0.01
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (171 bp):
GCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACCGAGTTCATTCACAGTCTAAGACCGGAC
CGAACCAAGGGTTGTGGTAACAGGACCAGCAACGAGATAGACAACACACAGAGAGGGATCGGGCT
GATCCCCGACTTGTACATTATACCTCTCCGGCAGACTGAAC
Found at i:33363195 original size:25 final size:26
Alignment explanation
Indices: 33363166--33363217 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
33363156 GTTGGCTTAG
33363166 GCATACGGAGTTCATT-CCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
33363191 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
33363217 G
1 G
33363218 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 15 0.60
26 10 0.40
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:33363440 original size:341 final size:339
Alignment explanation
Indices: 33362765--33363717 Score: 1000
Period size: 341 Copynumber: 2.8 Consensus size: 339
33362755 ACCCGTTCGA
* ** * *
33362765 TCCCCGGCTTGCACACCCTGCCTCTCCGACCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGG
1 TCCCCGGCTTGCGCATTCTGCCTCTCTGACCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGG
33362830 CTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATGGAGTTCATT-C---CT-AG--C--T-A
66 CTTAGGCATACGGAGTTCATTCCA-GTCTAAGCATATGGAGTTCATTCCAGTCTAAGATCGATCA
* * * * * * * * * *
33362885 GACCAAGGGTTGTGGCAGCGGGACCGGCATCACGCAGAGGGGGCCCGAG-CTAATCCCTGACTTG
130 GACCGAGGGTTGAGGCAGCAGGATCGACAGCACGCA-AGGGGGACCGAGTC-GATCCCCGGCTTG
* * * * * * * * * *
33362949 CGCATTATGCCTCTCCGATCGGCTCAGTGCCTGCACGCTCATTTCGTGGGTTGGCTTAAGCATAC
193 CGCATTCTGCCTCTCCGACCGGCTGAGGGCCCGCAAGCCCATTTCATGGGTTAGCTTAGGCATAC
* * * * * * ** * *
33363014 AGATTTAACTCCTAGTCTAAGACTGGACCGAACTGAGAGTTACGACAGTAGGATTGATAGAACGT
258 GGAGTTCATTCCTAGTCTAAGACTGGACAGAACCGAGAGTTACGACAGTAGGATCAACAGAACGC
** **
33363079 AAGAGGGACTGGGTCGG
323 AAGAGGGACCAGACCGG
* * *
33363096 TCCCTC-GCTTGCGCATTCTGCCTCTTTGACCGGCTGAGCGCCCACACACTCGTTTCATGGGTTG
1 TCCC-CGGCTTGCGCATTCTGCCTCTCTGACCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTG
33363160 GCTTAGGCATACGGAGTTCATTCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGAT
65 GCTTAGGCATACGGAGTTCATTCCAGTCTAAGCATATGGAGTTCATT-CCAGTCTAAGATC-GAT
* * *
33363225 CAGACCGAGGGTTGAGGTAGCAGGATCGATAGCATGCAAGGGGGACCGAGTCGATCCCCGGCTTG
128 CAGACCGAGGGTTGAGGCAGCAGGATCGACAGCACGCAAGGGGGACCGAGTCGATCCCCGGCTTG
** * *
33363290 CGCATTCCCCCTCTCCGACCGGTTGAGGGCCCGCATGCCCATTTCATGGGTTAGCTTAGGCATAC
193 CGCATTCTGCCTCTCCGACCGGCTGAGGGCCCGCAAGCCCATTTCATGGGTTAGCTTAGGCATAC
* * *
33363355 GGAGTTCATTCCTAGTCTAAGATTGGATCAG-ACCGAGGGTTGCGACAGTAGGATCAACA-ACAC
258 GGAGTTCATTCCTAGTCTAAGACTGGA-CAGAACCGAGAGTTACGACAGTAGGATCAACAGA-AC
33363418 GCAAGAGGGACCAGACCGG
321 GCAAGAGGGACCAGACCGG
** * * * * *
33363437 TCCCCGGCTTGCTTATTCTGCCCCTCTGGCCGGTTGAGCACCCGCACGCTCGTTTCGTGGGTTGG
1 TCCCCGGCTTGCGCATTCTGCCTCTCTGACCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGG
* * * *
33363502 CTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATGTGGAGTTCATTCGCAGTCTAAGATTGAAC
66 CTTAGGCATACGGAGTTCAT-TCCAGTCTAAGCATATGGAGTTCATTC-CAGTCTAAGATCGATC
* * * * * * *
33363567 AGGACTGAGGGTTGCGACAGCAGGATTGACAGCACGTAAGGGGGATCGGGTCGATCCCCGGCTTG
129 A-GACCGAGGGTTGAGGCAGCAGGATCGACAGCACGCAAGGGGGACCGAGTCGATCCCCGGCTTG
* * * * * * *
33363632 TGCATTCTGCCTTTCCGACCGACTGAGGGCCCGCAAACCCATTTTATGGGTTACCTTAGGCATAG
193 CGCATTCTGCCTCTCCGACCGGCTGAGGGCCCGCAAGCCCATTTCATGGGTTAGCTTAGGCATAC
33363697 GGAGTTCATTCC-ATGTCTAAG
258 GGAGTTCATTCCTA-GTCTAAG
33363718 CCCCAGCCGG
Statistics
Matches: 515, Mismatches: 86, Indels: 31
0.81 0.14 0.05
Matches are distributed among these distances:
330 22 0.04
331 79 0.15
332 2 0.00
335 2 0.00
336 2 0.00
338 1 0.00
340 2 0.00
341 213 0.41
342 192 0.37
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (339 bp):
TCCCCGGCTTGCGCATTCTGCCTCTCTGACCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGG
CTTAGGCATACGGAGTTCATTCCAGTCTAAGCATATGGAGTTCATTCCAGTCTAAGATCGATCAG
ACCGAGGGTTGAGGCAGCAGGATCGACAGCACGCAAGGGGGACCGAGTCGATCCCCGGCTTGCGC
ATTCTGCCTCTCCGACCGGCTGAGGGCCCGCAAGCCCATTTCATGGGTTAGCTTAGGCATACGGA
GTTCATTCCTAGTCTAAGACTGGACAGAACCGAGAGTTACGACAGTAGGATCAACAGAACGCAAG
AGGGACCAGACCGG
Found at i:33363481 original size:158 final size:157
Alignment explanation
Indices: 33363191--33363533 Score: 411
Period size: 158 Copynumber: 2.2 Consensus size: 157
33363181 TCCAGTCTAA
* ** * *
33363191 GCATATGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGAGGTAGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGAGACAGCAGGATCAACA
* * * * **
33363256 GCATGCAAGGGGGACCGAGTCGATCCCCGGCTTGCGCATTCCCCCTCTCCGACCGGTTGAGGGCC
66 ACACGCAAGAGGGACCGAGCCGATCCCCGGCTTGCGCATTCCCCCTCT-CGACCGGTTGAGCACC
*
33363321 CGCATGCCCATTTCATGGGTTAGCTTAG
130 CGCACGCCCATTTCATGGGTTAGCTTAG
* * * *
33363349 GCATACGGAGTTCATTCCTAGTCTAAGATTGGATCAGACCGAGGGTTGCGACAGTAGGATCAACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGAGACAGCAGGATCAACA
* ** *
33363414 ACACGCAAGAGGGACC-AGACCGGTCCCCGGCTTGCTTATTCTGCCCCTCT-GGCCGGTTGAGCA
66 ACACGCAAGAGGGACCGAG-CCGATCCCCGGCTTGCGCATTC--CCCCTCTCGACCGGTTGAGCA
* * * *
33363477 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
128 CCCGCACGCCCATTTCATGGGTTAGCTTAG
*
33363507 GCATACGGAGTTCATCCCCAGTCTAAG
1 GCATACGGAGTTCATTCCCAGTCTAAG
33363534 CATGTGGAGT
Statistics
Matches: 156, Mismatches: 26, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
157 2 0.01
158 147 0.94
160 7 0.04
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.22
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGAGACAGCAGGATCAACA
ACACGCAAGAGGGACCGAGCCGATCCCCGGCTTGCGCATTCCCCCTCTCGACCGGTTGAGCACCC
GCACGCCCATTTCATGGGTTAGCTTAG
Found at i:33365160 original size:26 final size:26
Alignment explanation
Indices: 33365123--33365174 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
33365113 GTTGGCTTAG
33365123 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
33365149 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
33365175 AATTGAACCG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:33365519 original size:26 final size:26
Alignment explanation
Indices: 33365489--33365541 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
33365479 GTTAACTTAG
33365489 GCATACGGAATTCATCCCCAGTCTAA
1 GCATACGGAATTCATCCCCAGTCTAA
* * * *
33365515 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAATTCATCCCCAGTCTAA
33365541 G
1 G
33365542 ATCGGACTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAATTCATCCCCAGTCTAA
Found at i:33366406 original size:26 final size:26
Alignment explanation
Indices: 33366369--33366421 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33366359 GTTGACTTAG
33366369 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
33366395 GCATAC-AGAGTTCATTCCCAGTCTAA
1 GCATACGA-AGTTCATCCCCAGTCTAA
33366421 G
1 G
33366422 ATTGGACCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:33366907 original size:26 final size:26
Alignment explanation
Indices: 33366870--33366922 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
33366860 GTTGGCTTAG
* *
33366870 GCATACGGAGTTTATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
33366896 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
33366922 G
1 G
33366923 ATTGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:33367267 original size:26 final size:26
Alignment explanation
Indices: 33367237--33367289 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
33367227 GTTGACTTAT
33367237 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
33367263 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
33367289 G
1 G
33367290 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:33367445 original size:868 final size:869
Alignment explanation
Indices: 33364403--33367794 Score: 3291
Period size: 868 Copynumber: 3.9 Consensus size: 869
33364393 CTCCCTCCGG
* * * *
33364403 CTGAGCGCCCGCACGCTTGTTTCGTCGGTTGGCCTAGGCATACGTAGTTCATTCCATGTCTAAGC
1 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
* * * * * * * * * * * *
33364468 CCCAGTCGGATCGAGGGTTGTGGTAGTAACATCGGTAATGGGATCGACAGCACGTAGAAGGGGAC
66 CCCAGCCGGACCGAGGGTTGTGGCAGCAAGACCGGCAGTGAGATCGACAGCACGCAGAGGGGGAT
* * *
33364533 CAAGCTGATCCCCGGCTTGCACATTATGCCTCTCCAATCGGCCTCTCTGGCCGGTTGAGTGCCCA
131 CAAGCTGATCCCCGGCTTGCGCATTATG-C-CT-C--T----C-C-C-GGCCGGTTGAGCGCCCG
* * * * *
33364598 CACGCTTGTTTTATGGGTTGACTTAGGCATACAGAGTTGATCCTCAGTCTAAGCATACAGAGTTC
184 CACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTC
* * * * * * * * * *
33364663 ATTTCTAGTCTAAGATCGGATC-GAATCATGGGTTACGACAGCAGGATCGATAGTACGCAGGGGG
249 ATTCCCAGTCTAAGATCGGACCGGACTGA-GGGTTGCGACAACAGGATCGACAGCACGCAAGGGG
* * * * * *
33364727 GACCAGGCCAATCCTCGACTTGCGCATTCTGCCTCTCCTGTCAGTTGAGTGCCTGCACGCCCGTT
313 GACCA-GCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGGTTGAGTGCCCGCACGCTCGTT
* * * * *
33364792 TCGTGGGTTGGCATAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCAGAGCGAGAGTTGT
377 TCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCAGACCGAGGGTTGT
* * *
33364857 GGTAGC-AGGAC-CGACAGCACGATAGAGGGGGATC-GG-CGATCCTCGGCTTGCGCATTATGCC
442 GGCAGCGA-GACTAG-CAGCACG-TAGAGGGGGACCAGGCCGATCCTCGGCTTGCGCATTATGCC
* * * * *
33364918 TCTTCGATCGGCTAAGTGCCTGCACGCTCGTTTCATGCGTTGACTTAGGCATACGGAGTTCATTC
504 TCTTCGATCGACTAAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTC
* * * * * * * *
33364983 CCAGTATAAGATTG-GACCGGATCGAGGGTTGCAACAGCAGGATCGATAGCATGCAGGGGGGACC
569 CCAATCTAAGATCGAGACCAGACCGAGGGTTGCAGCAGCAGGATCGACAGCACGCAGGGGGGACC
* * *** ** * * *
33365047 TGGCTGGTCCCCGACTTG-GCATTCTACCACTCCAG-TCAACTAAGAGTCC-GCACGTTCGTTTC
634 GGGCTGATCCCCG-CTTGTGCATTCTACCACTTTGGCTCGGCTGAGCGTCCAGCACGCTCGTTTC
*
33365109 GTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTA
698 GTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTA
* * * * * * * *
33365174 AAATTGAACCGGACCGAGGGTTGCGGTAGCAGGACCAGCAGCAAGATCGACAGCACGCTGGGGTG
763 AGATTGGATCGGACTGAGGGTTGCGGTAGCAAGACCAGCAGCAGGATCGATAGCACGC-AGGG-G
** * * * * * * *
33365239 GA-CTAGTCGATCCTCGGCTTGCGAATTCCGCCTTTCCGGCT-A
826 GACCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGACTGA
* * * * *
33365281 GTTGAGCGCCCGCACGCTCATTTTGTGGGTTGGCTTAGGCATATGGCGTTCATTCCATGTCTAAG
1 -CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
* * *
33365346 CCCCAGCCGGACCGAGGGTTGTGGCAGCAGGATCGACAGTGAGATCGACAGCACGCAGA-GGGGA
65 CCCCAGCCGGACCGAGGGTTGTGGCAGCAAGACCGGCAGTGAGATCGACAGCACGCAGAGGGGGA
* * * * * * * ** * *
33365410 TCGAGCTGATCCTCGGCGTACGCATTATGCCCCT-CCAGCTGACTGAGTGCCCGCACGCTCATTT
130 TCAAGCTGATCCCCGGCTTGCGCATTATGCCTCTCCCGGCCGGTTGAGCGCCCGCACGCTCGTTT
* * ** *
33365474 CATGGGTTAACTTAGGCATACGGAATTCATCCCCAGTCTAAGCATATGGAGTTCATTCCTAGTCT
195 CATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCT
* ** * * * * * * *
33365539 AAGATCGGACTGGA-TCGAGGGTTGCGACAGTAGGATTGACAGTATG-TAGGGGGGCCGGGTCGA
260 AAGATCGGACCGGACT-GAGGGTTGCGACAACAGGATCGACAGCACGCAAGGGGGACC-AGCCGA
* * * * * * * * * *
33365602 TCACCGGCTTGTGCATTCTACCTCTTCGATCGGCTGAGCGCCCGCATGCTCATTTCGTGGGTTGG
323 TCCCCGACTTGCGCATTCTGCCTCTCCGGTCGGTTGAGTGCCCGCACGCTCGTTTCGTGGGTTGG
* * ** * * *
33365667 CTTAGGCATAGGGAGTTTATTCCATGTCTAAG-CCCAAGCCGGATTGAGGGTTGTCGTAGCGGGA
388 CTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAA-CCAGACCGAGGGTTGTGGCAGCGAGA
* * * * *
33365731 -TATGCAGCATGCAGAGGGGGATCTA-GCCGATCCTCGGCTTACGCATTAT-CCTC-TCTGACCG
452 CTA-GCAGCACGTAGAGGGGGA-CCAGGCCGATCCTCGGCTTGCGCATTATGCCTCTTC-GATCG
* ** * * * * *
33365792 ACTTAGCT-CCCGCGTGCTCGTTTTGTGGGTTGACTCAAGCATACGGACTTTATTCCCAATCTAA
514 ACTAAG-TGCCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCAATCTAA
** * * *
33365856 GATC-AGACC-GAACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGGATCAGG-TCGG
578 GATCGAGACCAG-ACCGAGGGTTGCAGCAGCAGGATCGACAGCACGCAGGGGGGACCGGGCT-GA
* * * * * * * *
33365918 TCCCTGGCTTGCGCATTCTACCTCTTTGAC-CGGCTGAGCGCCCAG-ACACTCGTTTCATAGGTT
641 TCCC-CGCTTGTGCATTCTACCACTTTGGCTCGGCTGAGCGTCCAGCACGCTCGTTTCGTGGGTT
* * * * * *
33365981 GGCTTAGGCATACGGAGTTCATTCGATGTCTAAACATACCGAGTTCATTCCCAATCTAACATCGG
705 GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGG
* * * ** *
33366046 ATCAGA-TCGAAGGTTGCGGCAGCAAGAGTAGCAGCAGGATCAATAGCACGCAGGGGGGGACCGG
770 ATCGGACT-GAGGGTTGCGGTAGCAAGACCAGCAGCAGGATCGATAGCACGCA--GGGGGACCGG
* *
33366110 GCCGAT-CCTAGGCTTGGGCATTCTGCCTCTCCGACTGA
832 GCCGATCCCCA-GCTTGCGCATTCTGCCTCTCCGACTGA
* * * * * *
33366148 CTGAGTGCCTAG-ATGCTCCTTTCGTGGGTTGGCTTAGGTATACGGAGTTCAATCCATGTCTAAG
1 CTGAGCGCC-CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
* * * * * * * * *
33366212 CTCCAGCCGGACCGAAGGTTGTGACAGCAAGACCGGTAGTGGGATTGGCAGCATGCAGAGAGGGA
65 CCCCAGCCGGACCGAGGGTTGTGGCAGCAAGACCGGCAGTGAGATCGACAGCACGCAGAGGGGGA
33366277 TC-AGACTGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCCTCTCCGGTTGGCTGAGCGCC
130 TCAAG-CTGATCCCCGGCTTGCGCATTATGCCTCT-C--CCGG-----CCGG-T---TGAGCGCC
* *
33366341 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACAGAGT
182 CGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGT
* ** * * * * * * *
33366406 TCATTCCCAGTCTAAGATTGGACCAAACCGAGGGTTGTGGCAATAGGATCGATAGCACGTAGGGG
247 TCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGACAACAGGATCGACAGCACGCAAGGG
** ** * * * *
33366471 GGACCGAGCCGATCCTAGACTTATGCATTCTGCCTCTCCAGTCGGTTGAGTGCCCGAATGCACGT
312 GGACC-AGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGGTTGAGTGCCCGCACGCTCGT
* * ** *
33366536 TTCATGGGTTGGCTTAGGCATAGGGAGTTCATTTCATGTCTAAGCCCCAACTGGACCGAGGGTTA
376 TTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCAGACCGAGGGTTG
* *
33366601 TGGCAACGAGACTAGCAGCACGTAGTGGGGGACCAGGCCGATCC-CTGGCTTGCGCATTATGCCT
441 TGGCAGCGAGACTAGCAGCACGTAGAGGGGGACCAGGCCGATCCTC-GGCTTGCGCATTATGCCT
* * * * *
33366665 CTTCGATCGGCTGAGTGCCTGCACACTCGTTTTGTGGGTTGACTTATGCATACGGAGTTCATTCC
505 CTTCGATCGACTAAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCC
* * * * * * * * *
33366730 CAGTCTGAGATCGA-ATCAGACCGAAGGTTGCGGTAGCAAGATCGACAGCACGCAGTGAGGACCG
570 CAATCTAAGATCGAGACCAGACCGAGGGTTGCAGCAGCAGGATCGACAGCACGCAGGGGGGACCG
* * *
33366794 GG-TCGATCCCCAGCTTGTGCATTCTGCCACTTTGGCT-GGCTGAGCGTTC-GCACGCTCATTTC
635 GGCT-GATCCCC-GCTTGTGCATTCTACCACTTTGGCTCGGCTGAGCGTCCAGCACGCTCGTTTC
* *
33366856 GTGGGTTGGCTTAGGCATACGGAGTTTATTCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTA
698 GTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTA
* * * *
33366921 AGATTGGATCGGACTGAGGGTTGTGGTAGCAAGACCAACAGCAGGATCGGTAGCACACAGGGGGA
763 AGATTGGATCGGACTGAGGGTTGCGGTAGCAAGACCAGCAGCAGGATCGATAGCACGCAGGGGGA
* * *
33366986 TCCGGGCCAATCCCCAGCTTACGCATTCTGCCTCTCCGATTGA
828 -CCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGACTGA
* *
33367029 CTGAGAGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTGCATGTCTAAGC
1 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
* * * * * *
33367094 CCCAGTCGGACCGAGGGTTGTGGTAGTAGGACCGGCAGCGAGATCGACAGCACACAGAGGGGGAT
66 CCCAGCCGGACCGAGGGTTGTGGCAGCAAGACCGGCAGTGAGATCGACAGCACGCAGAGGGGGAT
** * **
33367159 CGGGCTGATCCCTGGCTTGCGCATTATGCCTCT-TTGGCCGGTTGAGCGCCCGCACGCTCGTTTC
131 CAAGCTGATCCCCGGCTTGCGCATTATGCCTCTCCCGGCCGGTTGAGCGCCCGCACGCTCGTTTC
* *
33367223 ATGGGTTGACTTATGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
196 ATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTA
*
33367288 AGATCGGACCGGACTGAGGGTTGC-AGCAACAGGATCGACAGCACGCAAGAGGGACCAGCTCGAT
261 AGATCGGACCGGACTGAGGGTTGCGA-CAACAGGATCGACAGCACGCAAGGGGGACCAGC-CGAT
* * *
33367352 CCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGTTGAGTGCCCGTACGCTCGTTTCGTGGGTTGGC
324 CCCCGACTTGCGCATTCTGCCTCTCCGGTCGGTTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGC
** * *
33367417 TTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACGGAGGGTTGTGGCAGCGGGACT
389 TTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCAGACCGAGGGTTGTGGCAGCGAGACT
* * * * * *
33367482 AGTAGCACGTAGAGGGGGACTACGTCGATCCTCGGCTTGCACATTATGCCTCTTCGATCGACTCA
454 AGCAGCACGTAGAGGGGGACCAGGCCGATCCTCGGCTTGCGCATTATGCCTCTTCGATCGACTAA
* * * *
33367547 GCGCCCGTACGCTCGTTTCGTGGGTTGACTTATGCATATGGAGTTCATTCCCAATCTAAGAT-TA
519 GTGCCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCAATCTAAGATCGA
* * * * *
33367611 GACCAAACCGAGGGTTGCAGTAGCAGGATCGACAGCACGTAGGGGGGGATCGGGCTGATCCCCGG
584 GACCAGACCGAGGGTTGCAGCAGCAGGATCGACAGCACGCA-GGGGGGACCGGGCTGATCCCCGC
* * * * * * * * * * * *
33367676 TTGGTGCATTTTGCCTC-TTCGATCGGTTGAGC-ACCTGCAGGATCGTTTCGTGGCTTGGCATAG
648 TT-GTGCATTCTACCACTTTGGCTCGGCTGAGCGTCCAGCACGCTCGTTTCGTGGGTTGGCTTAG
*
33367739 GCATACGGAGTTCATTCCATGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATT
712 GCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATT
33367795 TTGAGCCACG
Statistics
Matches: 2040, Mismatches: 404, Indels: 148
0.79 0.16 0.06
Matches are distributed among these distances:
863 16 0.01
864 228 0.11
865 268 0.13
866 136 0.07
867 38 0.02
868 392 0.19
869 111 0.05
870 1 0.00
871 4 0.00
872 4 0.00
873 1 0.00
875 1 0.00
876 3 0.00
877 3 0.00
878 28 0.01
879 103 0.05
880 120 0.06
881 316 0.15
882 262 0.13
883 5 0.00
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (869 bp):
CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
CCCAGCCGGACCGAGGGTTGTGGCAGCAAGACCGGCAGTGAGATCGACAGCACGCAGAGGGGGAT
CAAGCTGATCCCCGGCTTGCGCATTATGCCTCTCCCGGCCGGTTGAGCGCCCGCACGCTCGTTTC
ATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTA
AGATCGGACCGGACTGAGGGTTGCGACAACAGGATCGACAGCACGCAAGGGGGACCAGCCGATCC
CCGACTTGCGCATTCTGCCTCTCCGGTCGGTTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTT
AGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCAGACCGAGGGTTGTGGCAGCGAGACTAG
CAGCACGTAGAGGGGGACCAGGCCGATCCTCGGCTTGCGCATTATGCCTCTTCGATCGACTAAGT
GCCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCAATCTAAGATCGAGA
CCAGACCGAGGGTTGCAGCAGCAGGATCGACAGCACGCAGGGGGGACCGGGCTGATCCCCGCTTG
TGCATTCTACCACTTTGGCTCGGCTGAGCGTCCAGCACGCTCGTTTCGTGGGTTGGCTTAGGCAT
ACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGACTGAG
GGTTGCGGTAGCAAGACCAGCAGCAGGATCGATAGCACGCAGGGGGACCGGGCCGATCCCCAGCT
TGCGCATTCTGCCTCTCCGACTGA
Found at i:33367648 original size:159 final size:159
Alignment explanation
Indices: 33367263--33367765 Score: 410
Period size: 159 Copynumber: 3.2 Consensus size: 159
33367253 CCCAGTCTAA
* * * *
33367263 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCAGCAACAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCAGGATCGACA
* * * * * ** * *
33367328 GCACGCA-AGAGGGACCAGCTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGTTGAGTGC
66 GCACGTAGAGGGGGACCAGCTCGATCCCCGGCTTGCACATTATGCCTCTCCGACCGACTCAGCGC
*
33367392 CCGTACGCTCGTTTCGTGGGTTGGCTTAG
131 CCGTACGCTCGTTTCGTGGGTTGACTTAG
* ** * * ** * *
33367421 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-TCAGACGGAGGGTTGTGGCAGCGGGA-CTA
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCAGACCGAGGGTTGCAGCAGCAGGATCGA
* * * * *
33367483 GTAGCACGTAGAGGGGGACTA-CGTCGATCCTCGGCTTGCACATTATGCCTCTTCGATCGACTCA
64 -CAGCACGTAGAGGGGGACCAGC-TCGATCCCCGGCTTGCACATTATGCCTCTCCGACCGACTCA
*
33367547 GCGCCCGTACGCTCGTTTCGTGGGTTGACTTAT
127 GCGCCCGTACGCTCGTTTCGTGGGTTGACTTAG
* * * * *
33367580 GCATATGGAGTTCATTCCCAATCTAAGATTAGACCAAACCGAGGGTTGCAGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCAGGATCGACA
* ** ** * * * ** *
33367645 GCACGTAGGGGGGGATCGGGCT-GATCCCCGG-TTGGTGCATTTTGCCTCTTCGATCGGTTGAGC
66 GCACGTAGAGGGGGA-CCAGCTCGATCCCCGGCTT-GCACATTATGCCTCTCCGACCGACTCAGC
* * * * * * * *
33367708 ACCTGCAGGATCGTTTCGTGGCTTGGCATAG
129 GCCCGTACGCTCGTTTCGTGGGTTGACTTAG
33367739 GCATACGGAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
33367766 CATATGGAGT
Statistics
Matches: 270, Mismatches: 63, Indels: 23
0.76 0.18 0.06
Matches are distributed among these distances:
157 5 0.02
158 56 0.21
159 201 0.74
160 7 0.03
161 1 0.00
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCAGGATCGACA
GCACGTAGAGGGGGACCAGCTCGATCCCCGGCTTGCACATTATGCCTCTCCGACCGACTCAGCGC
CCGTACGCTCGTTTCGTGGGTTGACTTAG
Found at i:33367775 original size:26 final size:26
Alignment explanation
Indices: 33367739--33367791 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33367729 CTTGGCATAG
33367739 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
33367765 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
33367791 G
1 G
33367792 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:33369077 original size:159 final size:157
Alignment explanation
Indices: 33368536--33369079 Score: 481
Period size: 159 Copynumber: 3.4 Consensus size: 157
33368526 CCCGTAAACC
* * ***** * * *
33368536 CGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCCAACCAGACTGAGG
1 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATTGGATCGGACCGAGG
* *
33368600 GTTGTGGTAGCGGGACCGGCAGCACGCAGAGGGGGATCGGGTTGATCCCCGACTTGACCA-TTAT
65 GTTGTGGTAGCGGGACCGGCAGCACGCAAAGGGGGACCGGG-TGATCCCCGACTTG--CATTTAT
*
33368664 GCCTCTCCGATCGGCTCAGCGCCCGTACGCT
127 GCCTCTCCGATCGGCTCAGCGCCCGCACGCT
* * *
33368695 TGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGA-CTGGATCAAGG
1 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATC-GGACCGAGG
**** * ** * * * * * * **
33368759 GTTGCAACAACAAGATCGACATCACG-TACGGGGGACCAGGTCGATCCCCGTTTTACGCATTT-T
65 GTTGTGGTAGCGGGACCGGCAGCACGCAAAGGGGGACCGGGT-GATCCCCGACTT--GCATTTAT
* * ** * * * *
33368822 ACCTCTCTGGCCGACTGAGCACCCGCACGTT
127 GCCTCTCCGATCGGCTCAGCGCCCGCACGCT
* ****
33368853 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAG-CCCAAGTCGGACCGAG
1 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATTGGA-TCGGACCGAG
*
33368916 GGTTGTGGTAGCGGGACCGGCAGCACGCAAAGGGGGACCGGGCTGACCCCCGACTTGCATGTTAT
64 GGTTGTGGTAGCGGGACCGGCAGCACGCAAAGGGGGACCGGG-TGATCCCCGACTTGCAT-TTAT
*
33368981 GCCTCTCCGATCGGGTCAGCGCCCGCACGCT
127 GCCTCTCCGATCGGCTCAGCGCCCGCACGCT
* ** *
33369012 CGCTTCGTGGGTTGACTTAGGCATACAAAGGTCATTCCCAGTCTAAGATTGGATCGGACCGAGGG
1 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGACCGAGGG
33369077 TTG
66 TTG
33369080 CGGCAACAGC
Statistics
Matches: 290, Mismatches: 80, Indels: 30
0.73 0.20 0.08
Matches are distributed among these distances:
157 9 0.03
158 111 0.38
159 161 0.56
160 9 0.03
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.24
Consensus pattern (157 bp):
CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGACCGAGGG
TTGTGGTAGCGGGACCGGCAGCACGCAAAGGGGGACCGGGTGATCCCCGACTTGCATTTATGCCT
CTCCGATCGGCTCAGCGCCCGCACGCT
Found at i:33369099 original size:159 final size:156
Alignment explanation
Indices: 33368619--33369176 Score: 446
Period size: 159 Copynumber: 3.5 Consensus size: 156
33368609 GCGGGACCGG
* *
33368619 CAGCACGCAGAGGGGGATCGGGTTGATCCCCGACTTGACCA-TTATGCCTCTCCGATCGGCTCAG
1 CAGCACGCAAAGGGGGACCGGG-TGATCCCCGACTTG--CATTTATGCCTCTCCGATCGGCTCAG
* *
33368683 CGCCCGTACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGA
63 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGA
* * **
33368748 -CTGGATCAAGGGTTGCAACAACAAGATCGA
128 TC-GGACCGAGGGTTGCGGCAAC-AGATCGA
* * * * ** * * ** * *
33368778 CATCACG-TACGGGGGACCAGGTCGATCCCCGTTTTACGCATTT-TACCTCTCTGGCCGACTGAG
1 CAGCACGCAAAGGGGGACCGGGT-GATCCCCGACTT--GCATTTATGCCTCTCCGATCGGCTCAG
* * * ****
33368841 CACCCGCACGTTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAG-CCCA
63 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATTGG
* * * * * *
33368904 AGTCGGACCGAGGGTTGTGGTAGCGGGACCGG
127 A-TCGGACCGAGGGTTGCGGCAAC-AGATCGA
* *
33368936 CAGCACGCAAAGGGGGACCGGGCTGACCCCCGACTTGCATGTTATGCCTCTCCGATCGGGTCAGC
1 CAGCACGCAAAGGGGGACCGGG-TGATCCCCGACTTGCAT-TTATGCCTCTCCGATCGGCTCAGC
* ** *
33369001 GCCCGCACGCTCGCTTCGTGGGTTGACTTAGGCATACAAAGGTCATTCCCAGTCTAAGATTGGAT
64 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGAT
*
33369066 CGGACCGAGGGTTGCGGCAACAGCATCAA
129 CGGACCGAGGGTTGCGGCAACAG-ATCGA
* ** * * * * * * *
33369095 CAGCACACAGTGGGGGACTGGGCCGGTCCCCGGCTTGCACATTT-TGCCTCTCTGACCGGCTGAG
1 CAGCACGCAAAGGGGGACCGGG-TGATCCCCGACTTG--CATTTATGCCTCTCCGATCGGCTCAG
* *
33369159 CGCCTGCACGCTCATTTC
63 CGCCCGCACGCTCGTTTC
33369177 AAACGGTCAC
Statistics
Matches: 302, Mismatches: 81, Indels: 32
0.73 0.20 0.08
Matches are distributed among these distances:
157 9 0.03
158 111 0.37
159 171 0.57
160 8 0.03
161 3 0.01
ACGTcount: A:0.19, C:0.29, G:0.29, T:0.23
Consensus pattern (156 bp):
CAGCACGCAAAGGGGGACCGGGTGATCCCCGACTTGCATTTATGCCTCTCCGATCGGCTCAGCGC
CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCG
GACCGAGGGTTGCGGCAACAGATCGA
Found at i:33369602 original size:28 final size:26
Alignment explanation
Indices: 33369553--33369606 Score: 72
Period size: 28 Copynumber: 2.0 Consensus size: 26
33369543 TGACTTAGGT
33369553 CATACGGAGTTCATCCCCAGTCATAAG
1 CATACGGAGTTCATCCCCAGTC-TAAG
* *
33369580 CATACGGGAGTTCATTCCTAGTCTAAG
1 CATAC-GGAGTTCATCCCCAGTCTAAG
33369607 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 9 0.38
28 15 0.62
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.26
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAGTCTAAG
Found at i:33370225 original size:26 final size:26
Alignment explanation
Indices: 33370175--33370227 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
33370165 GTTGACTTAG
* *
33370175 GCATATGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAATCTAA
33370201 GCATACGGAGTTCATTCCC-AATCTAA
1 GCATACGGAGTTCA-TCCCTAATCTAA
33370227 G
1 G
33370228 ATTGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAATCTAA
Found at i:33371882 original size:11 final size:11
Alignment explanation
Indices: 33371866--33371898 Score: 66
Period size: 11 Copynumber: 3.0 Consensus size: 11
33371856 CTAGGGGCAC
33371866 CATCATCGGAG
1 CATCATCGGAG
33371877 CATCATCGGAG
1 CATCATCGGAG
33371888 CATCATCGGAG
1 CATCATCGGAG
33371899 AGCCTATCCG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.27, C:0.27, G:0.27, T:0.18
Consensus pattern (11 bp):
CATCATCGGAG
Found at i:33372201 original size:26 final size:26
Alignment explanation
Indices: 33372159--33372254 Score: 111
Period size: 26 Copynumber: 3.7 Consensus size: 26
33372149 ACAAAAAGTT
*
33372159 TTCATCCCCAATCTAAGCATACAGAG
1 TTCATCCCCAGTCTAAGCATACAGAG
* * * * *
33372185 CTCATCCTCAGTTTAAGCCTACGGAG
1 TTCATCCCCAGTCTAAGCATACAGAG
33372211 TTCATCCCCAGTCTAAGGCATACAGAG
1 TTCATCCCCAGTCTAA-GCATACAGAG
* *
33372238 TTCATTCCTAGTCTAAG
1 TTCATCCCCAGTCTAAG
33372255 ATAGAACCGG
Statistics
Matches: 56, Mismatches: 13, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
26 34 0.61
27 22 0.39
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.27
Consensus pattern (26 bp):
TTCATCCCCAGTCTAAGCATACAGAG
Found at i:33372250 original size:27 final size:26
Alignment explanation
Indices: 33372170--33372254 Score: 91
Period size: 27 Copynumber: 3.2 Consensus size: 26
33372160 TCATCCCCAA
*
33372170 TCTAAGCATACAGAGCTCA-TCCTCAG
1 TCTAAGCATACAGAGTTCATTCCT-AG
* * * * *
33372196 TTTAAGCCTACGGAGTTCATCCCCAG
1 TCTAAGCATACAGAGTTCATTCCTAG
33372222 TCTAAGGCATACAGAGTTCATTCCTAG
1 TCTAA-GCATACAGAGTTCATTCCTAG
33372249 TCTAAG
1 TCTAAG
33372255 ATAGAACCGG
Statistics
Matches: 46, Mismatches: 11, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
26 22 0.48
27 24 0.52
ACGTcount: A:0.28, C:0.27, G:0.18, T:0.27
Consensus pattern (26 bp):
TCTAAGCATACAGAGTTCATTCCTAG
Found at i:33372565 original size:159 final size:160
Alignment explanation
Indices: 33372226--33372574 Score: 400
Period size: 160 Copynumber: 2.2 Consensus size: 160
33372216 CCCCAGTCTA
* ** * *
33372226 AGGCATACAGAGTTCATTCC-TAGTCTAAGATAGAACCGGATTGAGGGTTGTGGTAGCAGGATCG
1 AGGCATACGGAGTTCATTCCAT-GTCTAAGCCACAACCGGATTGAGGGTTGTGGCAGCAGGATCG
* ** *
33372290 ACAGCACGCAGGGGGGACCGGACTGAATCCCCGACTTGCGCATTCTGTCTTTCCAGGTCGACTGA
65 ACAGCACGCAGGGGGGACCGGACCGAATCCCCGACTTGCGCATTCTACCTGTCCAGGTCGACTGA
* *
33372355 GTGCCTGAACGCCCATTTCGTGGGTTGGCTT
130 GTGCCTGAACGCCCATTTCATGGATTGGCTT
* * * * *
33372386 AGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAATCGGATTGAGGGTTTTGGCAGCGGGATCGA
1 AGGCATACGGAGTTCATTCCATGTCTAAGCCACAACCGGATTGAGGGTTGTGGCAGCAGGATCGA
* ** * * * *
33372451 TAGCACGCAGAGGGGGACCAGG-CCG-ATCCTTGGCTTGTGCATTTTACCTGTCCA-GTCGATTG
66 CAGCACGCAG-GGGGGACC-GGACCGAATCCCCGACTTGCGCATTCTACCTGTCCAGGTCGACTG
* * * *
33372513 AGTGCCTGCATGCTCGTTTCATGGATTGGCTT
129 AGTGCCTGAACGCCCATTTCATGGATTGGCTT
33372545 AGGCATACGGAGTTCATTCCATGTCTAAGC
1 AGGCATACGGAGTTCATTCCATGTCTAAGC
33372575 ATACGGAGTT
Statistics
Matches: 158, Mismatches: 28, Indels: 7
0.82 0.15 0.04
Matches are distributed among these distances:
159 62 0.39
160 83 0.53
161 11 0.07
162 2 0.01
ACGTcount: A:0.21, C:0.23, G:0.30, T:0.26
Consensus pattern (160 bp):
AGGCATACGGAGTTCATTCCATGTCTAAGCCACAACCGGATTGAGGGTTGTGGCAGCAGGATCGA
CAGCACGCAGGGGGGACCGGACCGAATCCCCGACTTGCGCATTCTACCTGTCCAGGTCGACTGAG
TGCCTGAACGCCCATTTCATGGATTGGCTT
Found at i:33373858 original size:25 final size:26
Alignment explanation
Indices: 33373830--33373881 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
33373820 TTTGGCTTAG
*
33373830 GCATACGGAGTTTATT-CCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
33373855 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
33373881 G
1 G
33373882 ATCAAACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 14 0.58
26 10 0.42
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:33374201 original size:26 final size:26
Alignment explanation
Indices: 33374171--33374221 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
33374161 GTTGGCTTAG
33374171 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
33374197 GCATATGGAGTTCATTCGCAGTCTA
1 GCATACGGAGTTCATCCCCAGTCTA
33374222 CGATCGGATC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.25, G:0.22, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:33374338 original size:341 final size:338
Alignment explanation
Indices: 33373435--33374380 Score: 825
Period size: 341 Copynumber: 2.8 Consensus size: 338
33373425 ATTCGATCCT
* * * ** ** * * *
33373435 CGGCTTGC-CATCCTGCCTCTCCGACCGGCTGAGTGCCCGCATGCTCGTTTCGTGGGTTAGCTTA
1 CGGCTTGCGCATTCTGCCTCTCCGACCGACTAAGCACCCGCACACTCATTTCATGGGTTGGCTTA
* * *
33373499 GGCATGCGGAGTTCATTCCATGTCTAAGCATATGGAGTTCATTCCCAG-CT-GGAT-----C-GA
66 GGCATACGGAGTTCATCCCA-GTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAAACCGGA
** * * * * * * * *
33373556 --G--GGTTGTGGCAACGGGACCGGCATCACGCAGAGGGGGCCCG-AGCTGATCCCCGACTTGCG
130 CCGAAGGTTACGACAACAGGATCGACAGCACACA-AGGGGGACCGAATC-GATCCCCGACTT-CG
* * * * * * * * * * * * *
33373616 CATTATGCCTCTCCGATCGGCTCAGTGCCTGCACGCTCGTTTCGTGGGTTGGATTAGGCATACGG
192 CATTCTACCTCTCCGACCGACTGAGAGCCCGCACACCCATTTCGTGGGTTAGCTTAGGCATACTG
* * * * *
33373681 ACTTAATTCCCAGTCTAAGATTGGATCGAATCAAGGGTTGCGAGAGCAGGATTGACAGAACATAA
257 AGTTCATT-CCAGTCTAAGATCGAATCGAATCAAGGGTTGCGAGAGCAGGATTGACAGAACACAA
* *
33373746 GAGGACTGGGTCGATCTC
321 GAGGACTAGGCCGATCTC
* ** * * * * *
33373764 CGGCTTGCGCATTCTGCCTCTCGGGTCGGCTGAGCGCCCGCACACTCGTTTCATGGTTTGGCTTA
1 CGGCTTGCGCATTCTGCCTCTCCGACCGACTAAGCACCCGCACACTCATTTCATGGGTTGGCTTA
* *
33373829 GGCATACGGAGTTTATTCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAAACCGGAC
66 GGCATACGGAGTTCATCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAAACCGGAC
* * * *
33373894 CGAAGGTTGCGGCAGCAGGATCGACAGCACACAAGGGGGACCGAATCGATCCCCGGCTTGCGCAT
131 CGAAGGTTACGACAACAGGATCGACAGCACACAAGGGGGACCGAATCGATCCCCGACTT-CGCAT
* * * *
33373959 TTTGCCTCTCCGATCGACTGAGAGCCCGCACGCCCATTTCGTGGGTTAGCTTAGGCATACTGAGT
195 TCTACCTCTCCGACCGACTGAGAGCCCGCACACCCATTTCGTGGGTTAGCTTAGGCATACTGAGT
** * * * *
33374024 TCATTCCTAGTCTAAGATCGAATC-AGATTGAGGGTTGCGATAGTAGGATTGACA-ACACGCAGG
260 TCATTCC-AGTCTAAGATCGAATCGA-ATCAAGGGTTGCGAGAGCAGGATTGACAGA-ACACA-A
*
33374087 GGGGACTAGGCCGATC-C
321 GAGGACTAGGCCGATCTC
* *
33374104 CTGGCTTGCGCATTCTGCCTCTCCGACCGACTAAGCACCTGCACGCTCATTTCATGGGTTGGCTT
1 C-GGCTTGCGCATTCTGCCTCTCCGACCGACTAAGCACCCGCACACTCATTTCATGGGTTGGCTT
* * ** *
33374169 AGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCGCAGTCTACGATCGGATCGG
65 AGGCATACGGAGTTCAT-CCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAAACCGG
* * ** * **
33374234 ATCGATGGTTACGACAACAGGATCGACAGCACGTAAGGGGGATCGGGTCGATCCCCGACTAT-GC
129 ACCGAAGGTTACGACAACAGGATCGACAGCACACAAGGGGGACCGAATCGATCCCCGACT-TCGC
** * * *
33374298 ATTCTACCTCTCCGACCGGTTGAGGGCCCGTACACCCATTTTGTGGGTTAGCTTAGGC-TA-TGG
193 ATTCTACCTCTCCGACCGACTGAGAGCCCGCACACCCATTTCGTGGGTTAGCTTAGGCATACT--
33374361 GAGTTCATTCCATGTCTAAG
256 GAGTTCATTCCA-GTCTAAG
33374381 CCTTAGCCGA
Statistics
Matches: 509, Mismatches: 84, Indels: 36
0.81 0.13 0.06
Matches are distributed among these distances:
329 35 0.07
330 66 0.13
331 3 0.01
336 1 0.00
337 2 0.00
339 6 0.01
340 130 0.26
341 175 0.34
342 90 0.18
343 1 0.00
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.25
Consensus pattern (338 bp):
CGGCTTGCGCATTCTGCCTCTCCGACCGACTAAGCACCCGCACACTCATTTCATGGGTTGGCTTA
GGCATACGGAGTTCATCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAAACCGGAC
CGAAGGTTACGACAACAGGATCGACAGCACACAAGGGGGACCGAATCGATCCCCGACTTCGCATT
CTACCTCTCCGACCGACTGAGAGCCCGCACACCCATTTCGTGGGTTAGCTTAGGCATACTGAGTT
CATTCCAGTCTAAGATCGAATCGAATCAAGGGTTGCGAGAGCAGGATTGACAGAACACAAGAGGA
CTAGGCCGATCTC
Found at i:33374707 original size:25 final size:26
Alignment explanation
Indices: 33374672--33374723 Score: 81
Period size: 25 Copynumber: 2.0 Consensus size: 26
33374662 GTTGGCTTAG
33374672 GCATACGGAGTTCATTC-CATGTCTAA
1 GCATACGGAGTTCATTCTCA-GTCTAA
33374698 GCATA-GGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCTCAGTCTAA
33374723 G
1 G
33374724 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 18 0.72
26 7 0.28
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCTCAGTCTAA
Found at i:33375867 original size:26 final size:26
Alignment explanation
Indices: 33375830--33375882 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33375820 GTTGGCTTAG
33375830 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
33375856 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
33375882 G
1 G
33375883 ATTGGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:33376222 original size:170 final size:170
Alignment explanation
Indices: 33375896--33376223 Score: 369
Period size: 170 Copynumber: 1.9 Consensus size: 170
33375886 GGATCAGACC
* *
33375896 GAGGGTTGCGGCAGCAGGACCAGCAGCAAGATCGACAGCACGCTGGGGTGGACTGGTCGATCCTC
1 GAGGGTTGCGGCAGCAGGACCAGCAGCAAGATCGACAGCACGCTGAGGTGGACGGGTCGATCCTC
* * * * * *
33375961 GGCTTACGCATTCCGCCTCTCCGGCCGGTTGAGCACCTGCACGCTCATTTCATAGGTTGGCTTAG
66 GGCTTACGCATTACGCCTCTCCAGCCGATCGAGCACCCGCACGCTCATTTCATAGGTTGACTTAG
* *
33376026 GCATACAGAGTTCATTCCATGTCTAAGCCCTAGCCGGACT
131 GCATACAGAATTCATCCCATGTCTAAGCCCTAGCCGGACT
* * *
33376066 GAGGGTTGTGGCAGCAGGACC-GACAGCGAGATCGACAGCACG-TAGAGG-GGATCGGG-CTTAT
1 GAGGGTTGCGGCAGCAGGACCAG-CAGCAAGATCGACAGCACGCT-GAGGTGGA-CGGGTC-GAT
* * * ** * *
33376127 CCTCGGCTTGCGCATTATGCCTCTCCAGTCGATCGAGTGCCCGCACGCTCGTTTCATGGGTTGAC
62 CCTCGGCTTACGCATTACGCCTCTCCAGCCGATCGAGCACCCGCACGCTCATTTCATAGGTTGAC
***
33376192 TTAGGCATTTGGAATTCATCCCCA-GTCTAAGC
127 TTAGGCATACAGAATTCAT-CCCATGTCTAAGC
33376224 ATATGGAGTT
Statistics
Matches: 130, Mismatches: 23, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
169 6 0.05
170 121 0.93
171 3 0.02
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.23
Consensus pattern (170 bp):
GAGGGTTGCGGCAGCAGGACCAGCAGCAAGATCGACAGCACGCTGAGGTGGACGGGTCGATCCTC
GGCTTACGCATTACGCCTCTCCAGCCGATCGAGCACCCGCACGCTCATTTCATAGGTTGACTTAG
GCATACAGAATTCATCCCATGTCTAAGCCCTAGCCGGACT
Found at i:33376230 original size:26 final size:26
Alignment explanation
Indices: 33376196--33376248 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
33376186 GTTGACTTAG
*
33376196 GCATTTGGAATTCATCCCCAGTCTAA
1 GCATATGGAATTCATCCCCAGTCTAA
* * *
33376222 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATATGGAATTCATCCCCAGTCTAA
33376248 G
1 G
33376249 ATCGGACTAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATATGGAATTCATCCCCAGTCTAA
Found at i:33377104 original size:26 final size:26
Alignment explanation
Indices: 33377075--33377126 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
33377065 TTGACTTAGA
*
33377075 CATACGGAGTTCATCCCCAGTCTAAG
1 CATACAGAGTTCATCCCCAGTCTAAG
*
33377101 CATACAGAGTTCATTCCCAGTCTAAG
1 CATACAGAGTTCATCCCCAGTCTAAG
33377127 ATTGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (26 bp):
CATACAGAGTTCATCCCCAGTCTAAG
Found at i:33377604 original size:26 final size:26
Alignment explanation
Indices: 33377574--33377626 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
33377564 GTTGGCTTAG
33377574 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
33377600 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
33377626 G
1 G
33377627 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:33377969 original size:26 final size:26
Alignment explanation
Indices: 33377940--33377992 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
33377930 GTTGACTTAG
33377940 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* * *
33377966 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
33377992 G
1 G
33377993 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:33378237 original size:865 final size:860
Alignment explanation
Indices: 33375128--33378493 Score: 3248
Period size: 865 Copynumber: 3.9 Consensus size: 860
33375118 TGCACGCTTT
* * * *
33375128 TTTCATGGGTTGACTTAGGCATACGTAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTT
1 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTT
* * * * * * *
33375193 GTGGCAGTAAGACCGGCAGCGGGATCGACAGCCCGTAGAGAGGGACCGGGTTGATCTCCGACTTG
66 GTGGCAGCAAGACCGGCAGCGGGATCGACAGCACGCAGAGAGGGATCGAGCTGATCCCCGACTT-
* * * * *
33375258 CGCATTATGCATCTCCGATCAGCCTCTCCGGCCGGCTGAGTGCCCACACGTTCTTTTTC-TGGGT
130 -GC-----GCAT-T---AT--GCCTCTCCGGCCGGTTGAGCGCCCGCACGCTC-GTTTCGTGGGT
* ** * *
33375322 TGACTTAGGCATACGGAGTTCATCATCAATCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCG
182 TGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
* * * * * ** * * *
33375387 GATC-GAATCGTGGGTTGCAACAGCAGGATTGGTAGCACACAGGGGGGACCAGGCGGATCCCTGA
247 GACCAG-ACCGAGGGTTGCAGCAGCAGGATCGACAGCACGCAGGGGGGACCAGGCCGATCCCTGG
** * * *
33375451 CTT-CGCATTCTGCCTCTCC-AGCTGGCTGAGCACCCGCACGTCTGTTTCGTGGGTTGGCATAGG
311 CTTGCGCATTCTGCCTCTCCGA-C-GGCTGAGTGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGG
* * * *
33375514 CATGGGGAATTCATTCCATGTCTAAGCCCTAGCCAGA-GTGAGAGTTGTCGTAGCGGGACCGACA
374 CATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACG-GAGGGTTGTCGTAGCGGGACCGACA
* * * * *
33375578 GCACGCAGAGTGGGACCAGATCGATCCCCGGCTTGCGCATTACGCCTCTCCAACCGGTT-AAGTG
438 GCACGCAGAGGGGGACCAGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGTTCAA-CG
* * * * * *
33375642 CCTGCACTCTCGTTCCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTATAAGATCAGACC
502 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGATC
* * ** * * * * * * *
33375707 GGATCGAGGGTTGCGATAATAGGATCGACAGCATGCAGGGGGGACCTGGCTGGTCCCCGACTTAC
567 GGACCGAAGGTTGCGAGCA-A-GATCGACAGCACGTAGGGGGGACCAGGCCGATCCCCGGCTTGC
* * * * *
33375772 GCATTCTGCCACTCCGATCGACTGAGAGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACG
630 GCATTCTGCCTCTCCGCTCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACG
* ** *
33375837 AAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCAGACCGAGGGT
695 GAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGT
* * * * * *
33375902 TGCGGCAGCAGGACCAGCAGCAAGATCGACAGCACGCTGGGGTGGACTGGTCGATCCTCGGCTTA
760 T-CGG-AGCAGGACCAGCAGCAGGATCGGCAGCACGCAGGGG-GGACAGGTCGATCCTAGGCTTG
* * * ** * *
33375967 CGCATTCCGCCTCTCCGGCCGGTTGAGCACCTGCACGCTCA
822 CGCATTCTGCCTCTCTGACCGACTGAG-AGCT-CACTCTCA
* * * * *
33376008 TTTCATAGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCTAGCCGGACTGAGGGTT
1 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTT
* * * * * * * *
33376073 GTGGCAGCAGGACCGACAGCGAGATCGACAGCACGTAGAG-GGGATCGGGCTTATCCTCGGCTTG
66 GTGGCAGCAAGACCGGCAGCGGGATCGACAGCACGCAGAGAGGGATCGAGCTGATCCCCGACTTG
* * * * * * *
33376137 CGCATTATGCCTCTCCAGTCGATCGAGTGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATTT
131 CGCATTATGCCTCTCCGGCCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA-TA
* * * * *
33376202 GGAA-TTCATCCCCAGTCTAAGCATATGGAGTTCATTCCTAGTCTAAGATCGGACTAGACCAAGG
195 CGAAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGG
* * * * * *
33376266 GTTGC-GACAGTAGGATCGACAGTACGCAGGGGGGATCGGGCCGATCCCTGGCTTGTGCATTCTA
260 GTTGCAG-CAGCAGGATCGACAGCACGCAGGGGGGACCAGGCCGATCCCTGGCTTGCGCATTCTG
* * * *
33376330 CCTCTTCGGTCGGTTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCAT
324 CCTC-TCCGACGGCTGAGTGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCAT
* * ** ** * * *
33376395 TCCATGTCTAAACCCAAGCCAGATTGAGGGTTGTCGTAGTAGGACCGATAGCACGTAGAAGGGGA
388 TCCATGTCTAAGCCCCAGCCAGACGGAGGGTTGTCGTAGCGGGACCGACAGCACGCAGAGGGGGA
* * * * * * * * * *
33376460 TCGGGTCGATCCCCCGCTTAC-CATTATGCCTCTCCGATCGGCTCAGCTCCCGCATGCTCGTTTT
453 CCAGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGTTCAACGCCCGCACGCTCGTTTC
* * * *
33376524 GTGGGTTGA---AGGCATACAGAGTTCATTCCCAATCTAAGATCAGATCGAACCGAGGGTTGCGA
518 ATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGATCGGACCGAAGGTTGCG-
* * * * *
33376586 TAGCAGGATCAACAGTACGTAGGGGGGATCAGGCC-AGTCCCCGGCTTGCGCATTCTACCTCTCC
582 -AGCAAGATCGACAGCACGTAGGGGGGACCAGGCCGA-TCCCCGGCTTGCGCATTCTGCCTCTCC
* * * *
33376650 GAC-CGGCTGAGCACCCAG-ACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTTATTCGAT
645 G-CTCGACTGAGCGCCC-GCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAT
* * * *
33376713 GTCTAAGCATATC-GAGTTCATTCCCAATCTAAGATCAGATCGGATCAAGGGTT-GGAACAGTAA
708 GTCTAAGCATA-CGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTCGGAGCAG---
* * * *
33376776 GACTAGCAGCAGGATCGGTAGCACGCAGGGGGGGATCAGGCCGATCCTAGGCTTGTGCATTCTGC
769 GACCAGCAGCAGGATCGGCAGCACGCA-GGGGGGA-CAGGTCGATCCTAGGCTTGCGCATTCTGC
* * *
33376841 CTCTCTGACCGACTGAGTGCCCGGA-TGCTCG
832 CTCTCTGACCGACTGAGAGCTC--ACT-CTCA
* * * * * * *
33376872 TTTCGTGGGCTGGCTTAGGCATACGAAATTCAATCCATGTCTAAGCCCCAGCCAAACCGAAGGTT
1 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTT
* * * * * * *
33376937 GTGGTAGCAAGATCGGTAGTGGGATTGGCAGCACGCAGAGAGGGATC-AGACTGATCCTCGACTT
66 GTGGCAGCAAGACCGGCAGCGGGATCGACAGCACGCAGAGAGGGATCGAG-CTGATCCCCGACTT
* * * *
33377001 ACGCATTATGCCTCTCCGACCAGCCTTTCCAGTTGGCTGACTGCCCGCACGCTCGTTCCGTGGGT
130 GCGCATTATGCCTCTCCG----G-----CCGGTT-G-AG-C-GCCCGCACGCTCGTTTCGTGGGT
* * * *
33377066 TGACTTAGACATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATTG
182 TGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
* * ** * ** * *
33377131 GATCGGACCGAGGGTTGTGGCAACAGGATCGGTAGCACGCAGGGGGGACCGGGCCGATCCTCAGG
247 GACCAGACCGAGGGTTGCAGCAGCAGGATCGACAGCACGCAGGGGGGACCAGGCCGATCC-CTGG
* * * * * *
33377196 -TTGCGCATTCTGCCTCTCTAGTCGACAGAGTGCCCGAACGCACGTTTCGTGGGTTGGCTTAGGC
311 CTTGCGCATTCTGCCTCTC-CGACGGCTGAGTGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGC
* * * * *
33377260 ATAGGGAGTTCATTCCATGTCTAAGCCCCAACC-GAACCGAGGGTTATGGTAGCGGGACCGGCAG
375 ATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAG-ACGGAGGGTTGTCGTAGCGGGACCGACAG
* * ** * * *
33377324 CACGCAGTGGGGGACCCGGTCGATCCCTAGCTTGCGCATTATGCCTCTTCGATCGGTTCAACACC
439 CACGCAGAGGGGGACCAGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGTTCAACGCC
* * * * * *
33377389 TGCACACTTGTTTCATGGGTTGACTTATGCAT-CGGAGTTCATTCCCAATCTGAGATC-GAATCA
504 CGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAG-ATCG
* * * * *
33377452 GACCGAAGGTTGCAGCAGCAAGATCGATAGCACATAAGGGGGACCAGGCCGATCCCTGGCTTGTG
568 GACCGAAGGTTGC-G-AGCAAGATCGACAGCACGTAGGGGGGACCAGGCCGATCCCCGGCTTGCG
* * **
33377517 CATTCTGCCTCTCTGGCT-GGCTGAGCGTTCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACG
631 CATTCTGCCTCTC-CGCTCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACG
33377581 GAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGA-CGAGGGT
695 GAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGT
* * * * *
33377645 TACGGTAGCAGGACCAGCAACAGGATCGGCACCATGCAAGGGGAACCAGGTCGATCCCT-GGCTT
760 T-CGG-AGCAGGACCAGCAGCAGGATCGGCAGCACGCAGGGGGGA-CAGGTCGAT-CCTAGGCTT
*
33377709 GCGCATTCTGCCTCTCTGATCGACTGAGAGCTCATACTCTCA
821 GCGCATTCTGCCTCTCTGACCGACTGAGAGCTC--ACTCTCA
* * *
33377751 TTTCGTGGGTTGGCTTAGGCACACGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTT
1 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTT
* * * * * * * *
33377816 GTTGTAGTAGGACTGGCAGCGGGATCGACAGCATGCAGAGAGGGATCGAGCCGATCCCCGGCTTG
66 GTGGCAGCAAGACCGGCAGCGGGATCGACAGCACGCAGAGAGGGATCGAGCTGATCCCCGACTTG
* *
33377881 CGCATTATGCCTCTCTGGCCGGTTGAGCGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATAC
131 CGCATTATGCCTCTCCGGCCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
* *
33377946 GAAGTTCATCCCCAGTCTAAGCATGCGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGG
196 GAAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGG
* * * *
33378011 TTGCAGTAGCAGGATCGACAGCACGCA-AGGGGACC-GGCCTAATCCCTGGCTTGTGCATTCTGC
261 TTGCAGCAGCAGGATCGACAGCACGCAGGGGGGACCAGGCC-GATCCCTGGCTTGCGCATTCTGC
* * **
33378074 CTCTCCGACAGGTTGAGTGCCCGCACGCCCATTTTATGGGTTGGCTTAGGCATAGGGAGTTCATT
325 CTCTCCGAC-GGCTGAGTGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATT
* * * ** *
33378139 CCATGTCTAAGCCCCAGCCAGACGGGGGGTTGTGGCAGCGGGACCGGTAGCACGTAGAGGGGGAC
389 CCATGTCTAAGCCCCAGCCAGACGGAGGGTTGTCGTAGCGGGACCGACAGCACGCAGAGGGGGAC
* * * * * *
33378204 TAGGTCGATCCCCGGCTTGCACATTATGCCTCTTCGACCGGTTCAGCGCCCGCACGCTCATTTCG
454 CAGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGTTCAACGCCCGCACGCTCGTTTCA
* * * * * *
33378269 TGGGTTGACTTATGCATATGGAGTTCATTCCCAATCTAAAATCAGATTGGA-C-TAGGCTTACGA
519 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGATCGGACCGAAGG-TT--GC
* * ** * *
33378332 GAGCAAGATCGACAGTACGTAGGGGGGATCAGGCCGATCTTCGGCTGGTGCATTCTGCCTCTCCG
581 GAGCAAGATCGACAGCACGTAGGGGGGACCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCG
* * * * * * *
33378397 TTCGATTGAGTGCCCGCAGGATCGTTTCGTGGCTTGGCTTAGGCATACGGAGTTCATTCCATGTC
646 CTCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
* *
33378462 TAAACATATGGAGTTCATTCCCAGTCTAAGAT
711 TAAGCATACGGAGTTCATTCCCAGTCTAAGAT
33378494 TTTGAGCCAC
Statistics
Matches: 2030, Mismatches: 386, Indels: 155
0.79 0.15 0.06
Matches are distributed among these distances:
860 4 0.00
861 2 0.00
862 1 0.00
863 213 0.10
864 144 0.07
865 378 0.19
866 310 0.15
867 134 0.07
868 6 0.00
869 2 0.00
870 5 0.00
871 1 0.00
872 4 0.00
874 2 0.00
875 2 0.00
876 1 0.00
877 8 0.00
878 252 0.12
879 235 0.12
880 131 0.06
881 181 0.09
882 10 0.00
883 4 0.00
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (860 bp):
TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTT
GTGGCAGCAAGACCGGCAGCGGGATCGACAGCACGCAGAGAGGGATCGAGCTGATCCCCGACTTG
CGCATTATGCCTCTCCGGCCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
GAAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGG
TTGCAGCAGCAGGATCGACAGCACGCAGGGGGGACCAGGCCGATCCCTGGCTTGCGCATTCTGCC
TCTCCGACGGCTGAGTGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCC
ATGTCTAAGCCCCAGCCAGACGGAGGGTTGTCGTAGCGGGACCGACAGCACGCAGAGGGGGACCA
GGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGTTCAACGCCCGCACGCTCGTTTCATG
GGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGATCGGACCGAAGGTTGCGAGCA
AGATCGACAGCACGTAGGGGGGACCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGCTCGA
CTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
ATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTCGGAGCAGGACCAGCAGCAG
GATCGGCAGCACGCAGGGGGGACAGGTCGATCCTAGGCTTGCGCATTCTGCCTCTCTGACCGACT
GAGAGCTCACTCTCA
Found at i:33378476 original size:26 final size:26
Alignment explanation
Indices: 33378440--33378490 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
33378430 TTGGCTTAGG
33378440 CATACGGAGTTCATT-CCATGTCTAAA
1 CATACGGAGTTCATTCCCA-GTCTAAA
*
33378466 CATATGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
33378491 GATTTTGAGC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.31
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAA
Found at i:33379512 original size:159 final size:159
Alignment explanation
Indices: 33379324--33379844 Score: 520
Period size: 159 Copynumber: 3.3 Consensus size: 159
33379314 CCGTACACCT
* *
33379324 GTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAACCCCAACTGGACCTAGGG
1 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAA-CCCAACTGGACCTAGGG
*
33379388 TTGTGGTAGCGGGACCGACAGCACTCAGAGGGGGATCAGGCTGATCCCCGACTTGAC-TATTATG
64 TTGTGGTAGCGGGACCGACAGCACTCAGAGGGGGACCAGGCTGATCCCCGACTTGACATATTATG
33379452 CCTCTCCGATCGGCTCAGCGCCCGCACGCTC
129 CCTCTCCGATCGGCTCAGCGCCCGCACGCTC
**** * *
33379483 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATTGGA-TTGAGGG
1 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA-ACCCAACTGGACCT-AGGG
** * * * * * * * * ** *
33379547 TTGCAGCAACAGGATCTACAGAACGT-AG-GGGGGACCAGG-TCGATCCCC-ATTTTACGCATTC
64 TTGTGGTAGCGGGACCGACAGCAC-TCAGAGGGGGACCAGGCT-GATCCCCGACTTGACATATTA
* * * * * *
33379608 TACCTCTCCGACCGACTGAGCACCCGCACGTTC
127 TGCCTCTCCGATCGGCTCAGCGCCCGCACGCTC
* * * * *
33379641 GTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCAAGCCGGACCAAGGG
1 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAACCCAA-CTGGACCTAGGG
* * * * * * *
33379705 TTATGGTAGCGGGACCGGCAGCACACAAAGGGGGACCTGGCTGATCCCTGACTTG-CATGTTATG
64 TTGTGGTAGCGGGACCGACAGCACTCAGAGGGGGACCAGGCTGATCCCCGACTTGACATATTATG
*
33379769 CCTCTCCGATCGGCTCAGTGCCCGCACGCTC
129 CCTCTCCGATCGGCTCAGCGCCCGCACGCTC
* *
33379800 GCTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
1 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
33379845 GATCAGACCA
Statistics
Matches: 279, Mismatches: 69, Indels: 28
0.74 0.18 0.07
Matches are distributed among these distances:
157 10 0.04
158 109 0.39
159 148 0.53
160 12 0.04
ACGTcount: A:0.20, C:0.27, G:0.28, T:0.24
Consensus pattern (159 bp):
GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAACCCAACTGGACCTAGGGTT
GTGGTAGCGGGACCGACAGCACTCAGAGGGGGACCAGGCTGATCCCCGACTTGACATATTATGCC
TCTCCGATCGGCTCAGCGCCCGCACGCTC
Found at i:33379917 original size:159 final size:156
Alignment explanation
Indices: 33379185--33379955 Score: 491
Period size: 159 Copynumber: 4.9 Consensus size: 156
33379175 CCCAGTCTAA
* * * * * * *
33379185 GCATATGGAGTTCATTCCCAATCAAAAATCAGACCGGACTGAGGGTTGCGACAGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGACAGCAGGATCAACA
** * * * *
33379250 GCATGTAGGGGGGACCAGATCGATCCTC-AGCTTGTGCATTT-TGCCTC-CAC-AGTCGGTTGAG
66 GCACATAGGGGGGACCAG-GCGATCCCCGA-C-T-TGCATTTATGCCTCTC-CGA-TCGGCTCAG
* *
33379311 TGCCCGTACAC-CT-GTTTCGTGGGTTGGCTTAG
125 CGCCCG--CACGCTCGTTTCGTGGGTTGACTTAG
* * * ** * *
33379343 GCATAGGGAGTTCATT-CCATGTCTAA-ACCCCA-ACTGGACCT-AGGGTTGTGGTAGCGGGACC
1 GCATACGGAGTTCATTCCCA-GTCTAAGA--TCAGACCGGA-CTGAGGGTTGTGACAGCAGGATC
* *
33379404 GACAGCAC-TCAGAGGGGGATCAGGCTGATCCCCGACTTG-ACTATTATGCCTCTCCGATCGGCT
62 AACAGCACAT-AG-GGGGGACCAGGC-GATCCCCGACTTGCA-T-TTATGCCTCTCCGATCGGCT
33379467 CAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
122 CAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
** ** * * * *
33379502 GCATACGGAGTTCATTCCCAGTCTAAGATTGGATTGGATTGAGGGTTG-CAGCAACAGGATCTAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGA-CAGCAGGATCAAC
* * * * * *
33379566 AGAACGTAGGGGGGACCAGGTCGATCCCC-ATTTTACGCATTCTA--CCTCTCCGACCGACTGAG
65 AGCACATAGGGGGGACCAGG-CGATCCCCGA-CTT--GCATT-TATGCCTCTCCGATCGGCTCAG
* * * *
33379628 CACCCGCACGTTCGTTTCATGGGTTGGCTTAG
125 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
** ** * ** * * **
33379660 GCATACGGAGTTCATT-CCATGTCTAAGCCCA-AGCCGGACCAAGGGTTATGGTAGCGGGACCGG
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGA-CCGGACTGAGGGTTGTGACAGCAGGATCAA
* * * * *
33379723 CAGCACACAAAGGGGGACCTGGCTGATCCCTGACTTGCATGTTATGCCTCTCCGATCGGCTCAGT
64 CAGCACA-TAGGGGGGACCAGGC-GATCCCCGACTTGCAT-TTATGCCTCTCCGATCGGCTCAGC
*
33379788 GCCCGCACGCTCGCTTCGTGGGTTGACTTAG
126 GCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * *
33379819 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGACAGTAGGATCAACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGACAGCAGGATCAACA
* * * * * * *
33379884 GCACATAGTGGGGCACCGGGCCAGTCCCCGACTTGCACATTT-TACCTCTCCGACCGGTTGAGCG
66 GCACATAG-GGGGGACCAGGCGA-TCCCCGACTTG--CATTTATGCCTCTCCGATCGGCTCAGCG
*
33379948 CCTGCACG
127 CCCGCACG
33379956 TTTGTTTCAA
Statistics
Matches: 469, Mismatches: 102, Indels: 83
0.72 0.16 0.13
Matches are distributed among these distances:
156 1 0.00
157 22 0.05
158 163 0.35
159 260 0.55
160 19 0.04
161 4 0.01
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.23
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGACAGCAGGATCAACA
GCACATAGGGGGGACCAGGCGATCCCCGACTTGCATTTATGCCTCTCCGATCGGCTCAGCGCCCG
CACGCTCGTTTCGTGGGTTGACTTAG
Found at i:33381339 original size:26 final size:26
Alignment explanation
Indices: 33381303--33381355 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33381293 GTTGGCTTAC
*
33381303 GCATACGGAGTTCATTC-CATGTCTAA
1 GCATACAGAGTTCATTCTCA-GTCTAA
33381329 GCATACAGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATTCTCAGTCTAA
33381355 G
1 G
33381356 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCTCAGTCTAA
Found at i:33383447 original size:26 final size:26
Alignment explanation
Indices: 33383418--33383470 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
33383408 GTTGACTTAG
* *
33383418 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* *
33383444 GCATATAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
33383470 G
1 G
33383471 ATCGGATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:33383694 original size:158 final size:159
Alignment explanation
Indices: 33383516--33383947 Score: 460
Period size: 158 Copynumber: 2.7 Consensus size: 159
33383506 GTGACACGCA
* * ** * *
33383516 AGGGGGACCGAGCCGAATCCCCGGCTTACGCATTCTACCTCTCCAGCCGGCTAAGTACCCGCATG
1 AGGGGGACCGGGCCG-ATCCCCGGCTTGCGCATTCTACCTCTCC-GTTGGCTAAGCACCCGCACG
* * * * *
33383581 TTCGTTACGTGGGTTGACTTAGGCATA-GGAGTTCATTCCATGTCTAAGCCCCA-ATCGGATCGA
64 TTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGGACCAA
* * ** **
33383644 GGGTTGTGGTAGCGAGACCGGTAGCACGTAG
129 GGGTTGCGGTAGCAAGACCGACAGCACACAG
* * * * * *
33383675 AGGGGGACCGGGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGATTGACTCAGCACCCGCACGC
1 AGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCG-TTGGCTAAGCACCCGCACGT
* * *
33383740 TCGTTTCGTGGGTTGACTTAGGCATATGAAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCAA
65 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCGGACCAA
*
33383803 GGGTTGCGGTAGCAAGATCGACAGCACACAG
129 GGGTTGCGGTAGCAAGACCGACAGCACACAG
* * * * * *
33383834 A-AGGGACCGGGTCGGTCCCTGGCTTGCGCATTCTACCTCTCCGGTTGGTTGAGCACCCGCACGT
1 AGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCC-GTTGGCTAAGCACCCGCACGT
* * *
33383898 TTGTTTCGTGCGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
65 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
33383948 TACGGAGTTC
Statistics
Matches: 224, Mismatches: 42, Indels: 14
0.80 0.15 0.05
Matches are distributed among these distances:
157 4 0.02
158 153 0.68
159 64 0.29
160 3 0.01
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.24
Consensus pattern (159 bp):
AGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGTTGGCTAAGCACCCGCACGTT
CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGGACCAAGG
GTTGCGGTAGCAAGACCGACAGCACACAG
Found at i:33383955 original size:26 final size:26
Alignment explanation
Indices: 33383919--33383971 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
33383909 GTTGGCTTAG
33383919 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
33383945 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
33383971 G
1 G
33383972 ATCAAACTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:33390229 original size:26 final size:26
Alignment explanation
Indices: 33390199--33390251 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
33390189 GTTGACTTAG
33390199 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
33390225 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
33390251 G
1 G
33390252 ATCATACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:33390749 original size:26 final size:26
Alignment explanation
Indices: 33390699--33390751 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
33390689 GTTGACTTAG
* * *
33390699 GCATACGGAGTTCATGCCTAGTCTAA
1 GCATACGGAGTTCATCCCCACTCTAA
33390725 GCATACGGAGTTCATCCCCACTCTAA
1 GCATACGGAGTTCATCCCCACTCTAA
33390751 G
1 G
33390752 ATCGAATCAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCACTCTAA
Found at i:33391077 original size:26 final size:26
Alignment explanation
Indices: 33391041--33391093 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33391031 GTTAGCTTAG
*
33391041 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATATAGAGTTCATTCCCA-GTCTAA
33391067 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATATAGAGTTCATTCCCAGTCTAA
33391093 G
1 G
33391094 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATATAGAGTTCATTCCCAGTCTAA
Found at i:33391795 original size:26 final size:26
Alignment explanation
Indices: 33391765--33391817 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
33391755 GTTGACTTAG
*
33391765 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
33391791 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
33391817 G
1 G
33391818 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:33394348 original size:26 final size:26
Alignment explanation
Indices: 33394312--33394364 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
33394302 GTTGGCTTAG
33394312 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATATGGAGTTCATTCCCA-GTCTAA
33394338 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
33394364 G
1 G
33394365 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:33399258 original size:421 final size:421
Alignment explanation
Indices: 33398474--33399293 Score: 1426
Period size: 421 Copynumber: 1.9 Consensus size: 421
33398464 TCATATTTCT
* * * *
33398474 CCAAGAAGGTTTCTTCTTGTCTGCTTACCGCCTTGGCAAATTGGATGGCTGACACTACCTGCGAC
1 CCAAGAAGGTGTCTTCTTGTCTGCTTACCGCCTTGGCAAATTAGATGGCTGACACCACCCGCGAC
* *
33398539 CCAACTCTAAACCCTCTCTTCAATGGCACTAGGCATTGGCATCGTGCATCCAAGATGCAAACACA
66 CCAACTCCAAACCCTCTCTTCAATGGCACTAGGCATTGGCACCGTGCATCCAAGATGCAAACACA
* * * * *
33398604 ATCGGTAAAAGGCATAAGGAGGGCGTTAATCCGAATAAGGAAATCCAACCCAATCATAAACTTAT
131 ATCGGTAAAAGGCACAAGGAGGGCATTAATCCGAACAAGGAAATCCAACCCAATCACAAACTCAT
*
33398669 AGTCATCAAGGGGTATTACCTCAATGGTCTCCTTGCCTTTCCAGTCTCTAAGCTGCAACTCCACT
196 AGTCATCAAGGGGTATTACCTCAATGGTCTCCTTGCCTTTCCAGTCTCCAAGCTGCAACTCCACT
*
33398734 CCCCGTGCTACTCCAATGGCTGGAACCTCTTTGGAGTTCATCGTTTTAATGGTACCAGTCCCTTT
261 CCCCGTGCTACTCCAATGGCTGGAACCTCTTTAGAGTTCATCGTTTTAATGGTACCAGTCCCTTT
33398799 TTGCACCTTTAGTCCAAGCTTTCAGGCTCCATAAAAAGATGTGAGGCACCTATGTCCACTAGTGC
326 TTGCACCTTTAGTCCAAGCTTTCAGGCTCCATAAAAAGATGTGAGGCACCTATGTCCACTAGTGC
33398864 GCTCACCTTGGCTCATCATATTTCAGGGCTG
391 GCTCACCTTGGCTCATCATATTTCAGGGCTG
*
33398895 CCAAGAAGGTGTCTTCTTGTCTGCTTACCGCCTTGGCAAATTAGATGGCTGACACCACCCGTGAC
1 CCAAGAAGGTGTCTTCTTGTCTGCTTACCGCCTTGGCAAATTAGATGGCTGACACCACCCGCGAC
* *
33398960 CGAACTCCAGACCCTCT-TCTCAATGGCACTAGGCATTGGCACCGTGCATCCAAGATGCAAACAC
66 CCAACTCCAAACCCTCTCT-TCAATGGCACTAGGCATTGGCACCGTGCATCCAAGATGCAAACAC
*
33399024 AATCGGTAAAAGGCACAAGGAGGGCATTAATCCGAACAAGGAAATCCAACCTAATCACAAACTCA
130 AATCGGTAAAAGGCACAAGGAGGGCATTAATCCGAACAAGGAAATCCAACCCAATCACAAACTCA
* * * *
33399089 TAGTCGTCAAGGGGTATTACCTCAGTGGTCTCCTTGCCTTTCCGGTCTCCAAGCTGTAACTCCAC
195 TAGTCATCAAGGGGTATTACCTCAATGGTCTCCTTGCCTTTCCAGTCTCCAAGCTGCAACTCCAC
*
33399154 TCCCCGTGCTACTCCAATGGTTGGAACCTCTTTAGAGTTCATCGTTTTAATGGTACCAGTCCCTT
260 TCCCCGTGCTACTCCAATGGCTGGAACCTCTTTAGAGTTCATCGTTTTAATGGTACCAGTCCCTT
33399219 TTTGCACCTTTAGTCCAAGCTTTCAGGCTCCATAAAAAGATGTGAGGCACCTATGTCCACTAGTG
325 TTTGCACCTTTAGTCCAAGCTTTCAGGCTCCATAAAAAGATGTGAGGCACCTATGTCCACTAGTG
33399284 CGCTCACCTT
390 CGCTCACCTT
33399294 CTGACCCGCA
Statistics
Matches: 376, Mismatches: 22, Indels: 2
0.94 0.05 0.00
Matches are distributed among these distances:
420 1 0.00
421 375 1.00
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.27
Consensus pattern (421 bp):
CCAAGAAGGTGTCTTCTTGTCTGCTTACCGCCTTGGCAAATTAGATGGCTGACACCACCCGCGAC
CCAACTCCAAACCCTCTCTTCAATGGCACTAGGCATTGGCACCGTGCATCCAAGATGCAAACACA
ATCGGTAAAAGGCACAAGGAGGGCATTAATCCGAACAAGGAAATCCAACCCAATCACAAACTCAT
AGTCATCAAGGGGTATTACCTCAATGGTCTCCTTGCCTTTCCAGTCTCCAAGCTGCAACTCCACT
CCCCGTGCTACTCCAATGGCTGGAACCTCTTTAGAGTTCATCGTTTTAATGGTACCAGTCCCTTT
TTGCACCTTTAGTCCAAGCTTTCAGGCTCCATAAAAAGATGTGAGGCACCTATGTCCACTAGTGC
GCTCACCTTGGCTCATCATATTTCAGGGCTG
Found at i:33401392 original size:26 final size:26
Alignment explanation
Indices: 33401355--33401407 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33401345 GTTGACGTAG
33401355 GCATACGAAGTTCA-TCCTCAGTCTAA
1 GCATACGAAGTTCATTCC-CAGTCTAA
*
33401381 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
33401407 G
1 G
33401408 ATCGAACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:33402044 original size:159 final size:159
Alignment explanation
Indices: 33401813--33402252 Score: 582
Period size: 159 Copynumber: 2.8 Consensus size: 159
33401803 TAGGATCGGT
**
33401813 AGCACGCAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGC
1 AGCACGCAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGC
* * *
33401878 CCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CC
66 CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACC
*
33401942 AGA-TCGAGGGTTGTGGCAGCGGGACCGAC
131 AGACT-GAGGGTTGTGGCAGCAGGACCGAC
* * * * * * * * *
33401971 AGCACGCAGAGGGGGACCGGGACGATCCCTGGCTTGTGCATTATGCCTTTTCGGTTGGCTCAGCA
1 AGCACGCAG-GGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCG
* * * *
33402036 CCCGCACGCTCGTTTCGTGGGTTGACTTACGCATACGGAGTTCATTCCCA-ATCTAAG-ATCAGA
65 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGA
* *
33402099 CCGGACTGAGGGTTGTGGCAGCAGGATCGAC
129 CCAGACTGAGGGTTGTGGCAGCAGGACCGAC
* * * *
33402130 AGCACGCAGGGGGGATCAGGTCGATCCCCGACTTGCACATTCTGCCTCTCCGGTCGGCTGAGCGC
1 AGCACGCAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGC
* *
33402195 CCGTACGCTCGTTTCGTGGGTTCGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
66 CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
33402253 TATGGAGTTC
Statistics
Matches: 237, Mismatches: 39, Indels: 11
0.83 0.14 0.04
Matches are distributed among these distances:
157 3 0.01
158 102 0.43
159 128 0.54
160 4 0.02
ACGTcount: A:0.17, C:0.29, G:0.32, T:0.22
Consensus pattern (159 bp):
AGCACGCAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGC
CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACC
AGACTGAGGGTTGTGGCAGCAGGACCGAC
Found at i:33402233 original size:158 final size:157
Alignment explanation
Indices: 33401756--33402250 Score: 584
Period size: 158 Copynumber: 3.1 Consensus size: 157
33401746 TAAGCGTACA
** * * * * * **
33401756 GAGTTCATTCAGAGTCTAAGATCGGATCGGATCGAGGGTTGCGACAGTAGGATCGGTAGCACGCA
1 GAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGTGGCAGCAGGATCGACAGCACGCA
**
33401821 GGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGC
66 GGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGC
* *
33401886 CCGTTTCGTGGGTTGGCTTAGGCATAGG
131 TCGTTTCGTGGGTT-GCTTAGGCATACG
** * * *
33401914 GAGTTCATT-CCATGTCTAAGCCCCAG-CCAGATCGAGGGTTGTGGCAGCGGGACCGACAGCACG
1 GAGTTCATTCCCA-GTCTAAG-ATCAGACCGGATCGAGGGTTGTGGCAGCAGGATCGACAGCACG
* * * * * * * * *
33401977 CAGAGGGGGACCGGGACGATCCCTGGCTTGTGCATTATGCCTTTTCGGTTGGCTCAGCACCCGCA
64 CAG-GGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCA
*
33402042 CGCTCGTTTCGTGGGTTGACTTACGCATACG
128 CGCTCGTTTCGTGGGTTG-CTTAGGCATACG
*
33402073 GAGTTCATTCCCAATCTAAGATCAGACCGGA-CTGAGGGTTGTGGCAGCAGGATCGACAGCACGC
1 GAGTTCATTCCCAGTCTAAGATCAGACCGGATC-GAGGGTTGTGGCAGCAGGATCGACAGCACGC
* * * * *
33402137 AGGGGGGATCAGGTCGATCCCCGACTTGCACATTCTGCCTCTCCGGTCGGCTGAGCGCCCGTACG
65 AGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACG
33402202 CTCGTTTCGTGGGTTCGCTTAGGCATACG
130 CTCGTTTCGTGGGTT-GCTTAGGCATACG
33402231 GAGTTCATT-CCATGTCTAAG
1 GAGTTCATTCCCA-GTCTAAG
33402251 CATATGGAGT
Statistics
Matches: 278, Mismatches: 50, Indels: 18
0.80 0.14 0.05
Matches are distributed among these distances:
157 4 0.01
158 142 0.51
159 129 0.46
160 3 0.01
ACGTcount: A:0.18, C:0.28, G:0.32, T:0.22
Consensus pattern (157 bp):
GAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGTGGCAGCAGGATCGACAGCACGCA
GGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGC
TCGTTTCGTGGGTTGCTTAGGCATACG
Found at i:33402274 original size:26 final size:26
Alignment explanation
Indices: 33402224--33402276 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
33402214 GTTCGCTTAG
*
33402224 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATCTCTAA
*
33402250 GCATATGGAGTTCATTCCCA-CTCTAA
1 GCATACGGAGTTCATT-CCATCTCTAA
33402276 G
1 G
33402277 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATCTCTAA
Found at i:33403326 original size:158 final size:158
Alignment explanation
Indices: 33403164--33403456 Score: 345
Period size: 158 Copynumber: 1.9 Consensus size: 158
33403154 AGCTGGGCTG
** * ** * * *
33403164 AGGGTTGTGGTAGCGGGACCAGTAGCACGTAGAGGAGGATCGGGCCGATCCCTGGCTTGCGCATT
1 AGGGTTGCAGTAGCAGGACCAACAGCACGT-GAGGAGGACCGCGCCGATCCATGGCTTGCGCATT
* *
33403229 ATGCCTCTTCGACCGACTCAGCGCCTGCAC-CTCATTTCCTAGGTTGACTTATGCATACGGAGTT
65 ATGCCTCTTCGACCGACTCAGCGCCTGCACGCTCATTTCATAGGTTGACTTAGGCATACGGAGTT
33403293 CATTCCCAGTCAAAGATCATATTGGACCA
130 CATTCCCAGTCAAAGATCATATTGGACCA
* * * ** * *
33403322 AGGGTTGCAGTAGCAGGATCAACAGCACGTGAGGGGGACCGCGTCGATCCATGGCTTTTGCTTTC
1 AGGGTTGCAGTAGCAGGACCAACAGCACGTGAGGAGGACCGCGCCGATCCATGGCTTGCGCATTA
** * * * * * *
33403387 TGCCTCTTCGACCGGTTGAGCGCCTGCACGTTCGTTTTATGGGTTGGCTTAGGCATACGGAGTTC
66 TGCCTCTTCGACCGACTCAGCGCCTGCACGCTCATTTCATAGGTTGACTTAGGCATACGGAGTTC
33403452 ATTCC
131 ATTCC
33403457 ATGTCTAAGC
Statistics
Matches: 109, Mismatches: 25, Indels: 2
0.80 0.18 0.01
Matches are distributed among these distances:
157 52 0.48
158 57 0.52
ACGTcount: A:0.19, C:0.26, G:0.29, T:0.26
Consensus pattern (158 bp):
AGGGTTGCAGTAGCAGGACCAACAGCACGTGAGGAGGACCGCGCCGATCCATGGCTTGCGCATTA
TGCCTCTTCGACCGACTCAGCGCCTGCACGCTCATTTCATAGGTTGACTTAGGCATACGGAGTTC
ATTCCCAGTCAAAGATCATATTGGACCA
Found at i:33403476 original size:26 final size:26
Alignment explanation
Indices: 33403439--33403491 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33403429 GTTGGCTTAG
*
33403439 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
33403465 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
33403491 G
1 G
33403492 ATTTTGTGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:33404750 original size:158 final size:158
Alignment explanation
Indices: 33404539--33405041 Score: 446
Period size: 158 Copynumber: 3.2 Consensus size: 158
33404529 CCTAGTCTAA
* * ** *
33404539 GCATAC-GACGTTCATTCTCA-GTCTAAG-ATCAGACCAAACTAAGGGTTACGGCAGTAGGATCG
1 GCATACGGA-GTTCATTC-CATGTCTAAGCACCAGACCGAACCGAGGGTTGCGGCAGTAGGATCG
* * * * * * *
33404601 ATAGCACGAAGGGGGGACCGGGTCAATCCCTGGCTTATTCATTCTGCCTCTCCAGCCTGCTGAGC
64 ACAGCACGAAGAGGGGACCGGGTCGATCCCTGGCTTGTACATTCTGCCTCTCC-GTCAGCTGAGC
* *
33404666 GCCCGCATGCCCATTTCGTGGGTTGGCTTAG
128 GCCCGCACGCTCATTTCGTGGGTTGGCTTAG
* * * *
33404697 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCGAACCGAGGGTTGTGGCAGTAGGATCGGC
1 GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGAACCGAGGGTTGCGGCAGTAGGATCGAC
* * * * * * * * * *
33404761 AGTACGTAGAAGGGGATC-GATTGAT-CGTAGGCTTGTGCATTATGCCTCTCCGATCGGCTCAGC
66 AGCACGAAG-AGGGGACCGGGTCGATCCCT-GGCTTGTACATTCTGCCTCTCCG-TCAGCTGAGC
* * *
33404824 GCCCACACGCTCATTTCATGGGTTGACTTAG
128 GCCCGCACGCTCATTTCGTGGGTTGGCTTAG
* * * * *
33404855 GCATACGAAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTGCAGCAGCAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCGAACCGAGGGTTGCGGCAGTAGGATCGA
* * * * * * * *
33404918 CAGCATGCAGAGGGGACCGGGCCGATCCCCGACTTGCACATTCTGCCTCTCTTGTCAGCTGAGTG
65 CAGCACGAAGAGGGGACCGGGTCGATCCCTGGCTTGTACATTCTGCCTCTC-CGTCAGCTGAGCG
* * *
33404983 CCCGCACGTTCATTTTGTGAGTTGGCTTAG
129 CCCGCACGCTCATTTCGTGGGTTGGCTTAG
*
33405013 GCATATGGAGTTCATTCCATGTCTAAGCA
1 GCATACGGAGTTCATTCCATGTCTAAGCA
33405042 TACGGAGTTC
Statistics
Matches: 269, Mismatches: 63, Indels: 25
0.75 0.18 0.07
Matches are distributed among these distances:
157 18 0.07
158 234 0.87
159 17 0.06
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGAACCGAGGGTTGCGGCAGTAGGATCGAC
AGCACGAAGAGGGGACCGGGTCGATCCCTGGCTTGTACATTCTGCCTCTCCGTCAGCTGAGCGCC
CGCACGCTCATTTCGTGGGTTGGCTTAG
Found at i:33405049 original size:26 final size:26
Alignment explanation
Indices: 33405013--33405065 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33405003 GTTGGCTTAG
*
33405013 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
33405039 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
33405065 G
1 G
33405066 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:33405865 original size:26 final size:26
Alignment explanation
Indices: 33405836--33405888 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33405826 GTTGACTTAG
33405836 GCATACGGAGTTCA-TCCTCAGTCTAA
1 GCATACGGAGTTCATTCCT-AGTCTAA
*
33405862 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
33405888 G
1 G
33405889 ATCAGACCGT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:33406328 original size:158 final size:157
Alignment explanation
Indices: 33405862--33406363 Score: 514
Period size: 158 Copynumber: 3.2 Consensus size: 157
33405852 CTCAGTCTAA
* * *
33405862 GCATATGGAGTTCATTCC-TAGTCTAAGATCAGACCGTA-TCGAGGGTTACGACAGTAGGATCGA
1 GCATACGGAGTTCATTCCAT-GTCTAAGATCAGACCGGACT-GAGGGTTGCG-CAGTAGGATCGA
* * * **
33405925 CAGCACGCAGGGGGGATCGGGTCGATCCCCGACTTACGCATTCTGCCTCTCCGACCGGCT-AAAA
63 CAGCACGCAGGGGGGACCGGGTCGATCCCCGACTTACGCATTCTGCCTCTTCGGCCGGCTGAGCA
* *
33405989 GCCCACACGCCCGTTTCATGGGTTGGCTTAG
128 -CCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * ** * * * ** *
33406020 GCATAGGGAGTTCATTCCATGTTTAAGCCCCAG-CCAGACCGAGGGTTGTGGCAGCGGGACCGAC
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGACCGGACTGAGGGTTG-CGCAGTAGGATCGAC
* * * *
33406084 AGCACGCAGAGGGGGACCGGGTCGATCCCCGGCTTACGCATTATACCTCTTCGGCCGACTCG-GC
64 AGCACGCAG-GGGGGACCGGGTCGATCCCCGACTTACGCATTCTGCCTCTTCGGCCGGCT-GAGC
* * * *
33406148 GCCCGTACGCTCGTTTCATGGGTTGACTTAT
127 ACCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * *
33406179 ACATACGGAGTTCATTCCCA-GTCTAAGATCAGATCGGACTGAGGGTTGCAGCAATAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCGGACTGAGGGTTGC-GCAGTAGGATCGAC
* * * * * *
33406243 AGCACGTAGGGGGGACCGGGCCGATCCCCGATTTGCGTATTCTGCCTCTTCGGTCGGCTGAGCAC
64 AGCACGCAGGGGGGACCGGGTCGATCCCCGACTTACGCATTCTGCCTCTTCGGCCGGCTGAGCAC
*
33406308 CCGCACGCTCGTTT-AGTGGGTGGGCTTAG
129 CCGCACGCTCGTTTCA-TGGGTTGGCTTAG
33406337 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
33406364 CATACGGAGT
Statistics
Matches: 275, Mismatches: 56, Indels: 26
0.77 0.16 0.07
Matches are distributed among these distances:
157 5 0.02
158 144 0.52
159 123 0.45
160 3 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACCGGACTGAGGGTTGCGCAGTAGGATCGACAG
CACGCAGGGGGGACCGGGTCGATCCCCGACTTACGCATTCTGCCTCTTCGGCCGGCTGAGCACCC
GCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:33406373 original size:26 final size:26
Alignment explanation
Indices: 33406337--33406389 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
33406327 GTGGGCTTAG
33406337 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
33406363 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
33406389 G
1 G
33406390 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:33407370 original size:158 final size:158
Alignment explanation
Indices: 33406917--33407395 Score: 543
Period size: 158 Copynumber: 3.0 Consensus size: 158
33406907 AAGCATATAC
* **
33406917 AGTTCATTCCTAGTCTAAGATCGGACCGGACCGAGGGTTGCGATAGCAGGATCGGCAGCACGTAG
1 AGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGTAG
* * * * * * * * *
33406982 TGGGGACCGAGCCGATCCCCGACTTACGCATTTTGCCTCTCTGACCGGTTGGGTGCCCGCACGCT
66 AGGGGACCGGGCCGATCCCTGACTTGCGCATTATGCCTCTCCGATCGGTTGAGCGCCCGCACGCT
*
33407047 CGTTTTGTGGGTT-AGCTTAGGCAT-CGTG
131 CGTTTCGTGGGTTGA-CTTAGGCATACG-G
** * * * * *
33407075 AGTTCATTCC-ATGTCTAAGCCCCAG-CCGGACCAAGGGTTGTGGCAGCGGGACCGGCAGCACAT
1 AGTTCATTCCTA-GTCTAAG-ATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGT
* * * * * *
33407138 AGAAGGGGACCGGGCCGTTCCCTGACTTGCCCATTATGCCTCTCCGGTCGGCTCAACGCCCGCAC
64 AG-AGGGGACCGGGCCGATCCCTGACTTGCGCATTATGCCTCTCCGATCGGTTGAGCGCCCGCAC
*
33407203 GCTCATTTCGTGGGTTGACTTAGGCATACGG
128 GCTCGTTTCGTGGGTTGACTTAGGCATACGG
* ** * * * *
33407234 AGTTCATTCCTAGTCTAAGATTAGACTAGACCGAGAGTTGCGGCAGCAGGATCGACAGTACGCAG
1 AGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGTAG
* *
33407299 GGGGGACCGGGCCGATCCCTGACTTGCGCATTCTGCCTCTCCGATCGGTTGAGCGCCCGCACGCT
66 AGGGGACCGGGCCGATCCCTGACTTGCGCATTATGCCTCTCCGATCGGTTGAGCGCCCGCACGCT
* *
33407364 CGTTTCGTGGGTTGGCTTAGGCATACAG
131 CGTTTCGTGGGTTGACTTAGGCATACGG
33407392 AGTT
1 AGTT
33407396 TGTTCCATGT
Statistics
Matches: 262, Mismatches: 52, Indels: 14
0.80 0.16 0.04
Matches are distributed among these distances:
157 1 0.00
158 138 0.53
159 119 0.45
160 4 0.02
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.23
Consensus pattern (158 bp):
AGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGTAG
AGGGGACCGGGCCGATCCCTGACTTGCGCATTATGCCTCTCCGATCGGTTGAGCGCCCGCACGCT
CGTTTCGTGGGTTGACTTAGGCATACGG
Found at i:33408158 original size:26 final size:26
Alignment explanation
Indices: 33408108--33408160 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33408098 GTTGACTTAG
*
33408108 GCATACGGAGTTCATCCTCAGTCTAA
1 GCATACGGAGTTCATCCTCAATCTAA
33408134 GCATACGGAGTTCATTCC-CAATCTAA
1 GCATACGGAGTTCA-TCCTCAATCTAA
33408160 G
1 G
33408161 ATCAGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCTCAATCTAA
Found at i:33409872 original size:26 final size:26
Alignment explanation
Indices: 33409833--33409885 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
33409823 GTTGACTTAG
33409833 GCATACGGAATTCA-TCCTCAGTCTAA
1 GCATACGGAATTCATTCC-CAGTCTAA
33409859 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACGGAA-TTCATTCCCAGTCTAA
33409885 G
1 G
33409886 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 3 0.12
26 19 0.76
27 3 0.12
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGGAATTCATTCCCAGTCTAA
Found at i:33410235 original size:159 final size:158
Alignment explanation
Indices: 33409985--33410359 Score: 391
Period size: 158 Copynumber: 2.4 Consensus size: 158
33409975 CCGACTGAGT
* * * * * * **
33409985 GCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTTATTCCATGTCTAAGCCCCAG-
1 GCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCATGTCTAAG-ATCAGA
*** * * * **
33410049 TTAGA-TCGAGGGTTCTGGCAGCGGGATCGACAGCACA-CAGAGGGGGACCGAACCAATCCCCGC
65 CCGGACT-GAGGGTTATGGCAGCAGGATCGACAGCA-AGCAG-GAGGGACCGAACCAATCCCCAA
* *
33410112 CTTGCGTA-TCATGCCTCTTCGGCCAACTCAGC
127 CTTGCGTATTC-TACCTCTCCGGCCAACTCAGC
*
33410144 GCCCGTACGCTCGTTTCATGGGTTGACTTATGCATACGAAGTTCATTCTCAT-TCTAAGATCAGA
1 GCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTC-CATGTCTAAGATCAGA
* * * ** *
33410208 CCGGACTGAGGGTTATTGCAGCAGGATCGATAGCAAGCAGGAGGGACCGAGCTGATCCCTAACTT
65 CCGGACTGAGGGTTATGGCAGCAGGATCGACAGCAAGCAGGAGGGACCGAACCAATCCCCAACTT
* *
33410273 GCGTATTCTACCTCTCCGGCCAGCTGAGC
130 GCGTATTCTACCTCTCCGGCCAACTCAGC
* * *
33410302 GCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
1 GCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCATGTCTAAG
33410360 CATATGGAGT
Statistics
Matches: 179, Mismatches: 31, Indels: 13
0.80 0.14 0.06
Matches are distributed among these distances:
157 3 0.02
158 94 0.53
159 78 0.44
160 4 0.02
ACGTcount: A:0.21, C:0.27, G:0.27, T:0.25
Consensus pattern (158 bp):
GCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCATGTCTAAGATCAGAC
CGGACTGAGGGTTATGGCAGCAGGATCGACAGCAAGCAGGAGGGACCGAACCAATCCCCAACTTG
CGTATTCTACCTCTCCGGCCAACTCAGC
Found at i:33410901 original size:26 final size:26
Alignment explanation
Indices: 33410853--33410905 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
33410843 GTTGACTTAG
**
33410853 GCATACGGAGTTCATCTGTAGTCTAA
1 GCATACGGAGTTCATCTCCAGTCTAA
33410879 GCATACGGAGTTCAT-TCCCAGTCTAA
1 GCATACGGAGTTCATCT-CCAGTCTAA
33410905 G
1 G
33410906 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCTCCAGTCTAA
Found at i:33411392 original size:26 final size:26
Alignment explanation
Indices: 33411355--33411407 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33411345 GTTGGCTTAG
*
33411355 GCATACGTAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
33411381 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
33411407 G
1 G
33411408 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:33413766 original size:158 final size:159
Alignment explanation
Indices: 33413567--33414125 Score: 483
Period size: 158 Copynumber: 3.5 Consensus size: 159
33413557 TTGGCTTGTA
* * * * * * * *
33413567 CATTCTGCCTCTCCGA-CCGGCTGAGCGCCTGCATGCCCATTTCGTGGGTTGGCTTAGGCATAGG
1 CATTCTGCCTCTTCGAGTCGACTGAGTGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACG
* * * *
33413631 GAGTTCATTCCATGTCTAAGCCCCAGTCAAATCGAAGGTTGTTGCAGCGGGACTAGCAGCACGCA
66 GAGTTCATTCCATGTCTAAGCCCCAGTCAGATCGAAGGTTGTAGCAGCAGGACTAGCAGCATGCA
*
33413696 GAGGGGACTGGGTCGATCCCCGGCTTGCG
131 GAGGGGACCGGGTCGATCCCCGGCTTGCG
* * * * *** * *
33413725 CATTATGCCTCTTCGATTAG-CTCAGTGCCCGCACGCTCATTTCACAGGTTGACTTATGCATACG
1 CATTCTGCCTCTTCGAGTCGACTGAGTGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACG
* * ** * * * * * *
33413789 GAGTTCACTCCCA-GTCTGAG-ATCAGACCAGATAGACGGTTGTCGCAGTAGGA-TCGACAGCAT
66 GAGTTCA-TTCCATGTCTAAGCCCCAG-TCAGATCGAAGGTTGTAGCAGCAGGACTAG-CAGCAT
* * *
33413851 GCAGAAGGGACCGGGTCGATCCCCGGCTTACA
128 GCAGAGGGGACCGGGTCGATCCCCGGCTTGCG
* * * * * * *
33413883 CATTCTGCCTC-TCCAGCCGACTGAGCGCCCGTACGC-CTGTTTCGTGGGTTGGCTTAGGCGTAG
1 CATTCTGCCTCTTCGAGTCGACTGAGTGCCCGCACGCTC-ATTTCGTGGGTTGGCTTAGGCATAC
* * *
33413946 GGAGTTCATTCCATGTCTAAGCCCCAGTCGGA-CAGAGGGTTGTAGCAACAGGAC-AGGCAGCAT
65 GGAGTTCATTCCATGTCTAAGCCCCAGTCAGATC-GAAGGTTGTAGCAGCAGGACTA-GCAGCAT
* *
33414009 GAAGAGGGGGACCGGGTC-AACCCCGGCTTGCG
128 GCAGA-GGGGACCGGGTCGATCCCCGGCTTGCG
* * * * * * *
33414041 CATTCTACCTCTCCG-GTCGATTGAATGCCCACATGCTCATTTCGTGGGTTGGCTTAGGCATACA
1 CATTCTGCCTCTTCGAGTCGACTGAGTGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACG
*
33414105 GAGTTCATTCCAGGTCTAAGC
66 GAGTTCATTCCATGTCTAAGC
33414126 ATACGGAGTT
Statistics
Matches: 307, Mismatches: 80, Indels: 28
0.74 0.19 0.07
Matches are distributed among these distances:
157 14 0.05
158 271 0.88
159 22 0.07
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (159 bp):
CATTCTGCCTCTTCGAGTCGACTGAGTGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACG
GAGTTCATTCCATGTCTAAGCCCCAGTCAGATCGAAGGTTGTAGCAGCAGGACTAGCAGCATGCA
GAGGGGACCGGGTCGATCCCCGGCTTGCG
Found at i:33414134 original size:26 final size:26
Alignment explanation
Indices: 33414098--33414150 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33414088 GTTGGCTTAG
33414098 GCATACAGAGTTCATT-CCAGGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
33414124 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
33414150 G
1 G
33414151 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:33414848 original size:26 final size:26
Alignment explanation
Indices: 33414818--33414870 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
33414808 GTTGACTTAG
*
33414818 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
33414844 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
33414870 G
1 G
33414871 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:33415275 original size:157 final size:155
Alignment explanation
Indices: 33414894--33415331 Score: 464
Period size: 157 Copynumber: 2.8 Consensus size: 155
33414884 GAGGGTTGCG
* * * * * * * *
33414894 ACAGCACGCAGGGGGGACCGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTTCGGTCGACTGAGC
1 ACAGCACGCA-AGGGGATCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCAGCCG-GTGAGT
* * * * * * *
33414959 GCCTGCGCGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCAGTC
64 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCAGCC
* * * * * *
33415024 GGACCGAGGGTTATGGTAGCGGGACCG
129 GAACCGAGGGTGACGGCAGCAGGACCA
** * * * *
33415051 ACAGCACATAAAGGGGGATCGGGCCAATCCCTGGCTTACGCATTATGCCTCTCCAGCCTGGTCAG
1 ACAGCAC-GCAA-GGGGATCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCAGCC-GGTGAG
* *
33415116 TGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC-TAGTCTAAGATCAG
63 TGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGACCAG
* * *
33415180 ACCGAACCGATGGTGGCGGCAGCAGGATCA
127 -CCGAACCGAGGGTGACGGCAGCAGGACCA
33415210 ACAGCACGCAAGGGGATCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCAGCCGGTTGAGTG
1 ACAGCACGCAAGGGGATCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCAGCCGG-TGAGTG
* * * * *
33415275 CCCACATGCTCGTTTCATGGGTTGGCTTAGGCATTCGCAGTTCATTCCATGTCTAAG
65 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
33415332 CATGCAGAGT
Statistics
Matches: 230, Mismatches: 44, Indels: 14
0.80 0.15 0.05
Matches are distributed among these distances:
156 2 0.01
157 104 0.45
158 97 0.42
159 27 0.12
ACGTcount: A:0.18, C:0.28, G:0.30, T:0.23
Consensus pattern (155 bp):
ACAGCACGCAAGGGGATCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCAGCCGGTGAGTGC
CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCAGCCGA
ACCGAGGGTGACGGCAGCAGGACCA
Found at i:33417047 original size:158 final size:156
Alignment explanation
Indices: 33416589--33417069 Score: 432
Period size: 158 Copynumber: 3.0 Consensus size: 156
33416579 ATACGGGTCA
* * * * * * * *
33416589 TCTAAGATCGGACCAGATCGAGGGTTGCGGTAGTAGGATCGGTAGCATGTAGGGTGGATTGGGCC
1 TCTAAGATCAGACCGGA-CGAGGGTTGTGGCAGCAGGATCGGTAGCACGTAGGGGGGA-TGGGCT
** * * * * * * * *
33416654 GATCCCCGGCTTGCACATTCTGCCTCTCCGGCAGACAGAGCACCCACATGCCCGTTTCGGGGGTT
64 GATCCCCGGCTTGCACATTCTGCCTCTCTAGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
*
33416719 GGCTTAGGCATAGGGAGTTCATTCCATG
129 GGCTTAGGCATACGGAGTTCATTCCATG
* ** * * * *
33416747 TCCAAGCCCCAG-TCGGACCGAGGGTTATGGCAGCGGGA-CTGGTAGCACATAGAGGGGGATCGG
1 TCTAAG-ATCAGACCGGA-CGAGGGTTGTGGCAGCAGGATC-GGTAGCACGTAG-GGGGGAT-GG
* * * * * * * * * *
33416810 G-TGGATCCCCGGCTTGCGCATTATGCCTCT-TCGGTCGGCTCAGTGCTCGTACGTTCTTTTCGT
61 GCT-GATCCCCGGCTTGCACATTCTGCCTCTCTAGCT-GGCTGAGCGCCCGCACGCTCGTTTCGT
* *
33416873 GGGTTGACTTATGCATACGGAGTTCATTCCCA-G
124 GGGTTGGCTTAGGCATACGGAGTTCATT-CCATG
** *
33416906 TCTAAGATCAGACCGGACAGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGGACTGGGCT
1 TCTAAGATCAGACCGGAC-GAGGGTTGTGGCAGCAGGATCGGTAGCACGTAGGGGGGA-TGGGCT
* *
33416971 GATCCCCGACTTGCACATTCTACCTCTCTAGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
64 GATCCCCGGCTTGCACATTCTGCCTCTCTAGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
33417036 GGCTTAGGCATACGGAGTTCATTCCATG
129 GGCTTAGGCATACGGAGTTCATTCCATG
33417064 TCTAAG
1 TCTAAG
33417070 CATACGGACT
Statistics
Matches: 247, Mismatches: 62, Indels: 28
0.73 0.18 0.08
Matches are distributed among these distances:
157 4 0.02
158 125 0.51
159 114 0.46
160 4 0.02
ACGTcount: A:0.18, C:0.26, G:0.32, T:0.24
Consensus pattern (156 bp):
TCTAAGATCAGACCGGACGAGGGTTGTGGCAGCAGGATCGGTAGCACGTAGGGGGGATGGGCTGA
TCCCCGGCTTGCACATTCTGCCTCTCTAGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGG
CTTAGGCATACGGAGTTCATTCCATG
Found at i:33417082 original size:26 final size:26
Alignment explanation
Indices: 33417043--33417095 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33417033 GTTGGCTTAG
*
33417043 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGACTTCATTCCCA-GTCTAA
33417069 GCATACGGACTTCATTCCCAGTCTAA
1 GCATACGGACTTCATTCCCAGTCTAA
33417095 G
1 G
33417096 ATTTTAAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGACTTCATTCCCAGTCTAA
Found at i:33417790 original size:26 final size:26
Alignment explanation
Indices: 33417754--33417832 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
33417744 GTTGACTTAG
*
33417754 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
33417780 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
33417806 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
33417832 G
1 G
33417833 ATCGGATCGG
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.28, C:0.29, G:0.19, T:0.24
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:33418305 original size:26 final size:26
Alignment explanation
Indices: 33418269--33418321 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
33418259 GTTGGGTTAG
33418269 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
33418295 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
33418321 G
1 G
33418322 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:33418408 original size:26 final size:26
Alignment explanation
Indices: 33418372--33418421 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
33418362 AGGATCAGCA
33418372 TACGGAGTTCATCCCCAGTCTAAGCG
1 TACGGAGTTCATCCCCAGTCTAAGCG
**
33418398 TACGGAGTTCATTTCCAGTCTAAG
1 TACGGAGTTCATCCCCAGTCTAAG
33418422 ATCAGACCAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATCCCCAGTCTAAGCG
Found at i:33418776 original size:159 final size:157
Alignment explanation
Indices: 33418398--33418792 Score: 409
Period size: 159 Copynumber: 2.5 Consensus size: 157
33418388 AGTCTAAGCG
** * *
33418398 TACGGAGTTCATTTCCAGTCTAAGAT-CAGACCAGACTGAGGGTCCCGATAGCAGGATCGATAGC
1 TACGGAGTTCATTTCCAGTCTAAGATCCA-ACCA-ACTGAGGGTTGCGACAGCAGGATCGACAGC
* * * ** * * * * * *
33418462 ACGTATGGGGGATCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCTGATCGGTTGAGTGCCCG
64 ACGAAAGGGGGACCGGGCCAATCCCCGGCTTGCGCATTATGCCTCTCCGACCAGCTCAGTGCCCG
* * *
33418527 TATGCCCATTTCGTGGGTTGGCTTAGGCA
129 CACGCCCATTTCGTGGGTTGACTTAGGCA
* ** * * * * * * *
33418556 TAGGGAGTTCA-TTCCATGTCTAAGCCCCAGCCAAACCGAGAGTTGTGGCAGCGGGACCGACAGC
1 TACGGAGTTCATTTCCA-GTCTAAGATCCAACC-AACTGAGGGTTGCGACAGCAGGATCGACAGC
* *
33418620 ATGCAAAGGGGGACCGGGCCAATCCCTGGCTTGCGCATTATGCCTCTCCGACCAGCTCAGTGCCC
64 ACG-AAAGGGGGACCGGGCCAATCCCCGGCTTGCGCATTATGCCTCTCCGACCAGCTCAGTGCCC
***
33418685 GCACGTTTATTTCGTGGGTTGACTTAGGCA
128 GCACGCCCATTTCGTGGGTTGACTTAGGCA
33418715 TACGGAGTTCATTTCCAGTCTAAGATCCAACCGAACTGAGGGTTGCGACAGCAGGATCGACAGCA
1 TACGGAGTTCATTTCCAGTCTAAGATCCAACC-AACTGAGGGTTGCGACAGCAGGATCGACAGCA
*
33418780 CG-TAGGGGGACCG
65 CGAAAGGGGGACCG
33418793 AGGGTTGTTG
Statistics
Matches: 186, Mismatches: 46, Indels: 11
0.77 0.19 0.05
Matches are distributed among these distances:
157 15 0.08
158 41 0.22
159 125 0.67
160 5 0.03
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.23
Consensus pattern (157 bp):
TACGGAGTTCATTTCCAGTCTAAGATCCAACCAACTGAGGGTTGCGACAGCAGGATCGACAGCAC
GAAAGGGGGACCGGGCCAATCCCCGGCTTGCGCATTATGCCTCTCCGACCAGCTCAGTGCCCGCA
CGCCCATTTCGTGGGTTGACTTAGGCA
Found at i:33419130 original size:26 final size:26
Alignment explanation
Indices: 33419094--33419146 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
33419084 GTTGACTGAG
33419094 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
33419120 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
33419146 G
1 G
33419147 ATTGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:33419594 original size:158 final size:159
Alignment explanation
Indices: 33419120--33419938 Score: 716
Period size: 158 Copynumber: 5.2 Consensus size: 159
33419110 CCCAGTCTAA
* * * * * *
33419120 GCATACGGAGTTCATTCCTAGTCTAAGATTGGACCAGACCGAGGGTTGCGGTAGGAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGTAGCAGGATCGACA
* * * * * * *
33419185 GCACGCAGGGGGGATCGGGCCGATCCCCGGCTTGCACATTCTACCTCTTCGGTCGGCTGAG-TGC
66 GCACGCAGGGGGGATCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCAGCTCAGCT-C
*
33419249 CCGTATGCCT-ATTTCGTGGGTTGGCTTAG
130 CCGTATGCCTCATTTCGTGGGTTGACTTAG
* * ** * * * *
33419278 GCATAGGGAGTTCATT-CCATGTCTAAG-CCCCAGCCGGATCAAGGGTTGTGGCT-GCGGGACCG
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGA-CCGGACCGAGGGTTGTGG-TAGCAGGATCG
* * * *
33419340 ACAGCACGCAGAGGGGGACCGGGCCGATCCCCGACTTGGGCATTATGCCTCTCCGGCTAGCTCAG
63 ACAGCACGCAG-GGGGGATCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCAGCTCAG
* * *
33419405 CTCCCGCACG-CTCGTTTCGTGGGTTGACTTAG
127 CTCCCGTATGCCTCATTTCGTGGGTTGACTTAG
* * * * *
33419437 GCATACGAAGTTCATTCCCAGTCTAAGATTGGATCAGACCGAGGGTTGTGGTATCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGTAGCAGGATCGACA
* * * * * *
33419502 ACATGCAGGGGGGATCGGGTCAATCCCCGTCTTGCGCATTCTGCCTCTCCGGCCAGCTGAG-TGC
66 GCACGCAGGGGGGATCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCAGCTCAGCT-C
* *
33419566 CCATATGCCT-ATTTCGTGGGTTGGCTTAG
130 CCGTATGCCTCATTTCGTGGGTTGACTTAG
* ** ** * * * * *
33419595 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAACTGGATCGAGGGTTGTGGCT-GCGGGACCGG
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGACCGGACCGAGGGTTGTGG-TAGCAGGATCGA
* * * * * *
33419658 TAGCACGTAAAGGGGGATCGGGCCGATCCCCGACTTACGCATTATGCCTCTCCGGCTAGCTCAGC
64 CAGCACG-CAGGGGGGATCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCAGCTCAGC
*
33419723 TCCCGTA--CACTCGTTTCGTGGGTTGACTTAG
128 TCCCGTATGC-CTCATTTCGTGGGTTGACTTAG
* * * *
33419754 GCATACGGCGTTCATTCCCAGTCTAAGATCGGATCGGACCGATGGTTGTGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGTAGCAGGATCGACA
* * * * * * *
33419819 ACAAGCAGGGGGGATCGGGCTGATCCCC-AGCTTGCGCAATCTGCCTCTTCGGCC-GACTGAGCA
66 GCACGCAGGGGGGATCGGGCCGATCCCCGA-CTTGCGCATTCTGCCTCTCCGGCCAG-CTCAGCT
* * * * * *
33419882 CCCGCACG-CTCGTTTCATGGGTTGGCTTCG
129 CCCGTATGCCTCATTTCGTGGGTTGACTTAG
*
33419912 GCATACAGAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
33419939 CATACGAAGT
Statistics
Matches: 517, Mismatches: 120, Indels: 48
0.75 0.18 0.07
Matches are distributed among these distances:
157 13 0.03
158 259 0.50
159 236 0.46
160 9 0.02
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.24
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGTAGCAGGATCGACA
GCACGCAGGGGGGATCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCAGCTCAGCTCC
CGTATGCCTCATTTCGTGGGTTGACTTAG
Found at i:33419702 original size:317 final size:314
Alignment explanation
Indices: 33419120--33419939 Score: 1156
Period size: 317 Copynumber: 2.6 Consensus size: 314
33419110 CCCAGTCTAA
* * * * *
33419120 GCATACGGAGTTCATTCCTAGTCTAAGATTGGACCAGACCGAGGGTTGCGGTAGGAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGATCAGACCGAGGGTTGTGGTAGCAGGATCGACA
* * * * *
33419185 GCACGCAGGGGGGATCGGGCCGATCCCCGGCTTGCACATTCTACCTCTTCGGTCGGCTGAGTGCC
66 ACAAGCAGGGGGGATCGGG-CGATCCCC-GCTTGCGCATTCTGCCTCTTCGG-CCGCTGAGTGCC
*
33419250 CGTATGCCTATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGG
128 CGTATGCCTATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGG
* **
33419315 ATCAAGGGTTGTGGCTGCGGGACCGACAGCACGCAGAGGGGGACCGGGCCGATCCCCGACTTGGG
193 ATCAAGGGTTGTGGCTGCGGGACCGACAGCACGCAAAGGGGGACCGGGCCGATCCCCGACTTACG
*
33419380 CATTATGCCTCTCCGGCTAGCTCAGCTCCCGCACGCTCGTTTCGTGGGTTGACTTAG
258 CATTATGCCTCTCCGGCTAGCTCAGCTCCCGCACACTCGTTTCGTGGGTTGACTTAG
* *
33419437 GCATACGAAGTTCATTCCCAGTCTAAGATTGGATCAGACCGAGGGTTGTGGTATCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGATCAGACCGAGGGTTGTGGTAGCAGGATCGACA
* * *
33419502 ACATGCAGGGGGGATCGGGTCAATCCCCGTCTTGCGCATTCTGCCTCTCCGGCCAGCTGAGTGCC
66 ACAAGCAGGGGGGATCGGG-CGATCCCCG-CTTGCGCATTCTGCCTCTTCGGCC-GCTGAGTGCC
* *
33419567 CATATGCCTATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACTGG
128 CGTATGCCTATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGG
* ** * *
33419632 ATCGAGGGTTGTGGCTGCGGGACCGGTAGCACGTAAAGGGGGATCGGGCCGATCCCCGACTTACG
193 ATCAAGGGTTGTGGCTGCGGGACCGACAGCACGCAAAGGGGGACCGGGCCGATCCCCGACTTACG
*
33419697 CATTATGCCTCTCCGGCTAGCTCAGCTCCCGTACACTCGTTTCGTGGGTTGACTTAG
258 CATTATGCCTCTCCGGCTAGCTCAGCTCCCGCACACTCGTTTCGTGGGTTGACTTAG
* * * * *
33419754 GCATACGGCGTTCATTCCCAGTCTAAGATCGGATCGGACCGATGGTTGTGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGATCAGACCGAGGGTTGTGGTAGCAGGATCGACA
* **
33419819 ACAAGCAGGGGGGATCGGGCTGATCCCCAGCTTGCGCAATCTGCCTCTTCGGCCGACTGAGCACC
66 ACAAGCAGGGGGGATCGGGC-GATCCCC-GCTTGCGCATTCTGCCTCTTCGGCCG-CTGAGTGCC
* * * * * **
33419884 CGCACG-CTCGTTTCATGGGTTGGCTTCGGCATACAGAGTTCATTCCATGTCTAAGC
128 CGTATGCCT-ATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
33419940 ATACGAAGTT
Statistics
Matches: 448, Mismatches: 49, Indels: 12
0.88 0.10 0.02
Matches are distributed among these distances:
316 6 0.01
317 441 0.98
318 1 0.00
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.24
Consensus pattern (314 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATTGGATCAGACCGAGGGTTGTGGTAGCAGGATCGACA
ACAAGCAGGGGGGATCGGGCGATCCCCGCTTGCGCATTCTGCCTCTTCGGCCGCTGAGTGCCCGT
ATGCCTATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGATC
AAGGGTTGTGGCTGCGGGACCGACAGCACGCAAAGGGGGACCGGGCCGATCCCCGACTTACGCAT
TATGCCTCTCCGGCTAGCTCAGCTCCCGCACACTCGTTTCGTGGGTTGACTTAG
Found at i:33419942 original size:26 final size:26
Alignment explanation
Indices: 33419912--33419964 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
33419902 GTTGGCTTCG
33419912 GCATAC-AGAGTTCATT-CCATGTCTAA
1 GCATACGA-AGTTCATTACCA-GTCTAA
33419938 GCATACGAAGTTCATTACCAGTCTAA
1 GCATACGAAGTTCATTACCAGTCTAA
33419964 G
1 G
33419965 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.32, C:0.23, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTACCAGTCTAA
Found at i:33426540 original size:26 final size:26
Alignment explanation
Indices: 33426511--33426563 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
33426501 TATGACTTAG
*
33426511 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
33426537 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
33426563 G
1 G
33426564 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:33426983 original size:157 final size:158
Alignment explanation
Indices: 33426537--33427037 Score: 548
Period size: 157 Copynumber: 3.2 Consensus size: 158
33426527 CCCAGTCTAA
* * * * * * * *
33426537 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACTGACGGTTGCGACAGCAGGATTGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGTGGCAGCAGGATCGACA
* * * *
33426602 GCACGTAGGGGGGA-TCGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCAGCCGGTTGAGCAC
66 GCACGTAGGGGGGACT-GGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCAC
* *
33426666 CCGCATGCCCGTTTCGTGGGTTGGCTTAG
130 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
* ** ** *
33426695 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CC-AGACCGAGGGTTGTGGCAGTGGGACCG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGA-ACCGAGGGTTGTGGCAGCAGGATCG
* ** * * * * *
33426757 GCAGCACCCAGAGGGGGACAGGGCCGATCCCCAGCTTGCGCATTATGCCTCTCTGGTCGGCTCAA
63 ACAGCACGTAG-GGGGGACTGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAG
* * *
33426822 CACCCACACGCTCGTTTCATGGGTTGACTTAG
127 CACCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * *
33426854 GCATACGGAGTTCATTCCCAGT-TAAGATCAGACCGAACCGAGGGTTGTGGTAGCATGATCAATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGTGGCAGCAGGATCGACA
* *
33426918 GCACGTAGGGGGGACTGGGCCAATCCCC-GACTTGTGCATTCTGCCTCTCCGGTCGGCTGAGCAC
66 GCACGTAGGGGGGACTGGGCCGATCCCCAG-CTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCAC
*
33426982 CCGCACACTCGTTTCGTGGGTTGGCTTAG
130 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
33427011 GCATACGGAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
33427038 CATACGGAGT
Statistics
Matches: 277, Mismatches: 55, Indels: 22
0.78 0.16 0.06
Matches are distributed among these distances:
156 4 0.01
157 96 0.35
158 84 0.30
159 90 0.32
160 3 0.01
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGTGGCAGCAGGATCGACA
GCACGTAGGGGGGACTGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCACC
CGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:33427047 original size:26 final size:26
Alignment explanation
Indices: 33427011--33427063 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
33427001 GTTGGCTTAG
33427011 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
33427037 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
33427063 G
1 G
33427064 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:33427407 original size:25 final size:26
Alignment explanation
Indices: 33427378--33427429 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
33427368 GTTGACTTAG
33427378 GCATACGGAGTTCA-TCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
33427403 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
33427429 G
1 G
33427430 ATCAAACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 14 0.56
26 11 0.44
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:33427513 original size:354 final size:360
Alignment explanation
Indices: 33426953--33427609 Score: 876
Period size: 354 Copynumber: 1.8 Consensus size: 360
33426943 CCCGACTTGT
* ** * * * *
33426953 GCATTCTGCCTCTCCGGTCGGCTGAGCACCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACG
1 GCATTATGCCTCTCCGACCGGCTGAGCACCCACACACTCATTTCATGGGTTGACTTAGGCATACG
* * ** *
33427018 GAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGT
66 GAGTTCATCCCATATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGT
* * * *
33427083 TACGGTAGCAGGACCAGCAGCAGGATCGGTAGCACGTAGGGGGGACCGAGTCGATCCTCGACTTA
131 T---GTAGCA-G---AGCAGCAGGATCGATAGCACGCAGGGGGGACCGAGCCGATCCCCGACTTA
* * * * **
33427148 CGCATTCTACCTCTCCGGCCGGTTGAGTGCCCGCACGCTCGTTTCATGGGTTAGCTTAGGCATAC
189 CGCATTCTACCTCTCCGGCCAGCTGAGCGCCCGCACGCCCGTTTCATCCGTTAGCTTAGGCATAC
*
33427213 GGAGTTCATTCCGTGTCTAAGCCCCAGCCGGACCAAGGGTTGTCGTAGTAGGACCGGCAGTGGGA
254 GGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCAAGGGTTGTCGTAGTAGGACCGGCAGTGGGA
33427278 TCGGCAGCACACAGAGGGGGACCGGGCTGATCCTCCGCTTAC
319 TCGGCAGCACACAGAGGGGGACCGGGCTGATCCTCCGCTTAC
* * *
33427320 GCATTATGCCTCTCCGACCGGCTGAGCGCCCACACCCTTATTTCATGGGTTGACTTAGGCATACG
1 GCATTATGCCTCTCCGACCGGCTGAGCACCCACACACTCATTTCATGGGTTGACTTAGGCATACG
**
33427385 GAGTTCATCCCA-ATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAACTGGACCGAGGG-
66 GAGTTCATCCCATATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGT
* *
33427448 T-TA-C-G-GCAGCAGGATCGATAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTACGCATTC
131 TGTAGCAGAGCAGCAGGATCGATAGCACGCAGGGGGGACCGAGCCGATCCCCGACTTACGCATTC
** * * *
33427509 TACCTCTCCGGCCAGCTGAGCGCCCGCACGCCCGTTTTGTCCGTTGGCTTAGGTATAGGGAGTTC
196 TACCTCTCCGGCCAGCTGAGCGCCCGCACGCCCGTTTCATCCGTTAGCTTAGGCATACGGAGTTC
* *
33427574 ATTCCATGTCTAAGCCCCAGCCGGACCGATGGTTGT
261 ATTCCATGTCTAAGCCCCAGCCGGACCAAGGGTTGT
33427610 GGCAGCGGGA
Statistics
Matches: 253, Mismatches: 37, Indels: 13
0.83 0.12 0.04
Matches are distributed among these distances:
354 137 0.54
358 1 0.00
360 1 0.00
361 2 0.01
365 1 0.00
366 45 0.18
367 66 0.26
ACGTcount: A:0.20, C:0.29, G:0.29, T:0.22
Consensus pattern (360 bp):
GCATTATGCCTCTCCGACCGGCTGAGCACCCACACACTCATTTCATGGGTTGACTTAGGCATACG
GAGTTCATCCCATATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGT
TGTAGCAGAGCAGCAGGATCGATAGCACGCAGGGGGGACCGAGCCGATCCCCGACTTACGCATTC
TACCTCTCCGGCCAGCTGAGCGCCCGCACGCCCGTTTCATCCGTTAGCTTAGGCATACGGAGTTC
ATTCCATGTCTAAGCCCCAGCCGGACCAAGGGTTGTCGTAGTAGGACCGGCAGTGGGATCGGCAG
CACACAGAGGGGGACCGGGCTGATCCTCCGCTTAC
Found at i:33427882 original size:159 final size:154
Alignment explanation
Indices: 33427403--33427895 Score: 472
Period size: 158 Copynumber: 3.1 Consensus size: 154
33427393 CCCAATCTAA
** *
33427403 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACTGGACCGAGGGTTACGGCAGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAA-ATCAAAC-GGACCGAGGGTTGTGGCAGCAGGATCGACA
* * *
33427468 GCACGCAGGGGGGACCGGGCCGATCCCCGGCTTACGCATTCTACCTCTCCGGCC-AGCTGAGCGC
64 GCACGTAGGGGGGA-CGGGCCGATCCCCGGCTTGCGCATTCT-CCTCTCCGGCCGA-CTAAGCGC
* * **
33427532 CCGCACGCCCGTTTTGTCCGTTGGCTTAG
126 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * ** ** * * *
33427561 GTATAGGGAGTTCATT-CCATGTCTAAGCCCCAGCCGGACCGATGGTTGTGGCAGCGGGA-CTGG
1 GCATACGGAGTTCATTCCCA-GTCTAA--ATCAAACGGACCGAGGGTTGTGGCAGCAGGATC-GA
* * * *
33427624 CAGCACGTAGAGGGGGACGGGCCGATCCCCGGCTTGCGCATTATCGCTCTTCGGTCGGCTCAA-C
62 CAGCACGTAG-GGGGGACGGGCCGATCCCCGGCTTGCGCATTCTC-CTCTCCGGCCGACT-AAGC
* * ** *
33427688 CCCCGCACGCTTGTTTCGTGGGTTCACTTAT
124 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * *
33427719 GCATACGGAGTTCATTCCCAGTCTAATATCGGATCAGACTGAGGGTTGTGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAA-ATC-AAACGGACCGAGGGTTGTGGCAGCAGGATCGACA
* * * * *
33427784 GCACGTAGTGAGGGATTGGGCTGATCCCCGGCTTGCACATTCTGCCTCTCCAGCCGACTAAGCGC
64 GCACGTAG-GGGGGA-CGGGCCGATCCCCGGCTTGCGCATTCT-CCTCTCCGGCCGACTAAGCGC
33427849 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
126 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
33427878 GCATACGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
33427896 ATGCCTAAGC
Statistics
Matches: 265, Mismatches: 57, Indels: 25
0.76 0.16 0.07
Matches are distributed among these distances:
157 6 0.02
158 166 0.63
159 92 0.35
160 1 0.00
ACGTcount: A:0.18, C:0.29, G:0.30, T:0.23
Consensus pattern (154 bp):
GCATACGGAGTTCATTCCCAGTCTAAATCAAACGGACCGAGGGTTGTGGCAGCAGGATCGACAGC
ACGTAGGGGGGACGGGCCGATCCCCGGCTTGCGCATTCTCCTCTCCGGCCGACTAAGCGCCCGCA
CGCTCGTTTCGTGGGTTGGCTTAG
Found at i:33428630 original size:26 final size:26
Alignment explanation
Indices: 33428600--33428651 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
33428590 GTTGACTTAG
*
33428600 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
33428626 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
33428652 AATTGGACCG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:33428985 original size:26 final size:26
Alignment explanation
Indices: 33428956--33429008 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33428946 GTTGACTTAG
*
33428956 GCATACGGAGTTCA-TCTCCAGTCTAA
1 GCATACAGAGTTCATTC-CCAGTCTAA
33428982 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
33429008 G
1 G
33429009 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:33429215 original size:356 final size:356
Alignment explanation
Indices: 33428562--33429256 Score: 1016
Period size: 356 Copynumber: 2.0 Consensus size: 356
33428552 TCTCTGGTCA
* *
33428562 GCTGAGCGCCCGTACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
1 GCTGAGCGCCCGTACACTCATTTCATGAGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
*
33428627 CATACAGAGTTCATTCCCAGTCTAAAATTGGACCGAATCGAGGGTTGCGACAGCAGGATCGACAG
66 CATACAGAGTTCATTCCCAGTCTAAAATCGGACCGAATCGAGGGTTGCGACAGCAGGATCGACAG
* * * *
33428692 AACGCAGAGGGGACAGGGCCGATCCCCGGCTTGCGTATTCTGCCTCTTCGGTCGGCTAAGCGCCC
131 AACGCAGAGGGGACAGGGCCAATCCCCGGCTTGCGCATTCTGCCTCTCCAGTCGGCTAAGCGCCC
* *
33428757 GCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGGGTTCAATCCATGTCTAACCCCCAGCCGGA
196 GCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCAATCCATGTCTAACCCCCAGCCGGA
* * *
33428822 CCGAGGATTGTGGCAATAGGATCGGCAGCATGCAGAGGGGGACCGGGCTGATCCCCGGCTTGCGC
261 CCGAGGATTGTGGCAATAGGACCGACAGCATGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGC
*
33428887 ATTATTCCTCTTCGACCGACCTCTCTGACCG
326 ATTATGCCTCTTCGACCGACCTCTCTGACCG
* * * * *
33428918 GCTGAGTGCCTGTACGCTCATTTCGTGAGTTGACTTAGGCATACGGAGTTCATCTCCAGTCTAAG
1 GCTGAGCGCCCGTACACTCATTTCATGAGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
* * * *
33428983 CATACAGAGTTCATTCCCAGTCTAAGATCGGACC-AGATCGAGGGTTGCGACAGTATGATCGGCA
66 CATACAGAGTTCATTCCCAGTCTAAAATCGGACCGA-ATCGAGGGTTGCGACAGCAGGATCGACA
* * * * * * *
33429047 GCACGCAGGGGGGACCGGGCTAATCCCTGGCTTGTGCATTCTGCCTCTCCAGTCGGCTGAGCGCC
130 GAACGCAGAGGGGACAGGGCCAATCCCCGGCTTGCGCATTCTGCCTCTCCAGTCGGCTAAGCGCC
* * * * *
33429112 TGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGG
195 CGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCAATCCATGTCTAACCCCCAGCCGG
* * *
33429177 ACCGAGGGTTGTGGCAGTGGGACCGACAGC-TCGCAGAGGGGGACCGGGCCGATCCCCGGCTTGC
260 ACCGAGGATTGTGGCAATAGGACCGACAGCAT-GCAGAGGGGGACCGGGCCGATCCCCGGCTTGC
*
33429241 GCGTTATGCCTCTTCG
324 GCATTATGCCTCTTCG
33429257 GTCGACTCAG
Statistics
Matches: 299, Mismatches: 38, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
355 2 0.01
356 297 0.99
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.22
Consensus pattern (356 bp):
GCTGAGCGCCCGTACACTCATTTCATGAGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
CATACAGAGTTCATTCCCAGTCTAAAATCGGACCGAATCGAGGGTTGCGACAGCAGGATCGACAG
AACGCAGAGGGGACAGGGCCAATCCCCGGCTTGCGCATTCTGCCTCTCCAGTCGGCTAAGCGCCC
GCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCAATCCATGTCTAACCCCCAGCCGGA
CCGAGGATTGTGGCAATAGGACCGACAGCATGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGC
ATTATGCCTCTTCGACCGACCTCTCTGACCG
Found at i:33429447 original size:157 final size:155
Alignment explanation
Indices: 33428982--33429482 Score: 516
Period size: 159 Copynumber: 3.2 Consensus size: 155
33428972 TCCAGTCTAA
** * * *
33428982 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTGCGACAGTATGATCGGCA
1 GCATACAGAGTTCATT-CCAGTCTAAGATCAAACCAGATCGAGGGTTGCGGCAGTAGGATCGACA
* ** * * *
33429047 GCACGCAGGGGGGACCGGGCTAATCCCTGGCTTGTGCATTCTGCCTCTCCAGTCGGCTGAGCGCC
65 GCACACA-GGGGGACCGGGCCGATCCC-GGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGCGCC
* *
33429112 TGCACGCCCGTTTCATGGGTTGGCTTAG
128 CGCACGCTCGTTTCATGGGTTGGCTTAG
** ** * ** * * * * *
33429140 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGTGGGACCGACA
1 GCATACAGAGTTCATTCCA-GTCTAAGATCAAACCAGATCGAGGGTTGCGGCAGTAGGATCGACA
* * * * * * *
33429205 GCTCGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCGTTATGCCTCTTCGGTCGACTCAGTGC
65 G--CACACAGGGGGACCGGGCCGAT-CCCGGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGCGC
* * *
33429270 CCGCACGCTCGTTTCGTGGGTTGACTTAT
127 CCGCACGCTCGTTTCATGGGTTGGCTTAG
* * * * *
33429299 GCATACGGAGTTCATTCTGAGTCTAAGATCAAACCAGATCGAGGGTTACGGTAGCAGGATCGACA
1 GCATACAGAGTTCATTC-CAGTCTAAGATCAAACCAGATCGAGGGTTGCGGCAGTAGGATCGACA
* * *
33429364 GCACATAGGGGGACCGGGCCGATCCTCGGCATGCACATTCTGCCTCTTCGGTCGGCTGAGCGCCC
65 GCACACAGGGGGACCGGGCCGATCC-CGGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGCGCCC
*
33429429 GCACGCTCATTTCATGGGTTGGCTTAG
129 GCACGCTCGTTTCATGGGTTGGCTTAG
33429456 GCATACAGAGTTCATTCCATGTCTAAG
1 GCATACAGAGTTCATTCCA-GTCTAAG
33429483 CATACGGAGT
Statistics
Matches: 272, Mismatches: 64, Indels: 15
0.77 0.18 0.04
Matches are distributed among these distances:
156 3 0.01
157 101 0.37
158 46 0.17
159 115 0.42
160 7 0.03
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.23
Consensus pattern (155 bp):
GCATACAGAGTTCATTCCAGTCTAAGATCAAACCAGATCGAGGGTTGCGGCAGTAGGATCGACAG
CACACAGGGGGACCGGGCCGATCCCGGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGCGCCCGC
ACGCTCGTTTCATGGGTTGGCTTAG
Found at i:33429486 original size:26 final size:25
Alignment explanation
Indices: 33429456--33429507 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
33429446 GTTGGCTTAG
33429456 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCA-GTCTAA
* *
33429482 GCATACGGAGTTCGTTCCAGTCTAA
1 GCATACAGAGTTCATTCCAGTCTAA
33429507 G
1 G
33429508 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (25 bp):
GCATACAGAGTTCATTCCAGTCTAA
Found at i:33430734 original size:26 final size:26
Alignment explanation
Indices: 33430704--33430756 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
33430694 GTTGACTTAG
33430704 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* * *
33430730 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
33430756 G
1 G
33430757 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:33431313 original size:26 final size:26
Alignment explanation
Indices: 33431283--33431335 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
33431273 GTTGACTTAG
*
33431283 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATAAGGAGTTCATCCCTAGTCTAA
*
33431309 GCATAAGGAGTTCATTCCTAGTCTAA
1 GCATAAGGAGTTCATCCCTAGTCTAA
33431335 G
1 G
33431336 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATAAGGAGTTCATCCCTAGTCTAA
Found at i:33431813 original size:26 final size:26
Alignment explanation
Indices: 33431777--33431829 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33431767 GTTGGCTTAG
*
33431777 GCATACGGAGTTCCTT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
33431803 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
33431829 G
1 G
33431830 ATTTTGAGGC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:33432534 original size:26 final size:26
Alignment explanation
Indices: 33432498--33432550 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
33432488 GTTGACTTAG
33432498 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
33432524 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
33432550 G
1 G
33432551 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:33432908 original size:159 final size:158
Alignment explanation
Indices: 33432524--33432913 Score: 435
Period size: 159 Copynumber: 2.5 Consensus size: 158
33432514 CCCAGTCTAA
* * * * *
33432524 GCATATGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCAAGGGTTGCGATAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCAAGGGTTGCGGTAGCAGGATCGACA
* * * * *
33432589 GCACGCAGAGGTGTCTGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCACC
66 GCACGCAGAGGGGTCTGAGCCAATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTCAGCACC
* *
33432654 CGCACGCCCGTTTCATGGGTTGGCTTAG
131 CGCACGCCCATTTCATGGGTTGACTTAG
* ** * * * * * *
33432682 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCAGACCAAGGGTTGTGGCAGCGGGACCGG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGATCAGACCAAGGGTTGCGGTAGCAGGATCGA
*
33432745 CAGCACGCAGAGAGGGATC-GAGCCAATCCCCGGCTTGCGCATTATGCCTCTCCGGCCGGCTCAG
64 CAGCACGCAGAG-GGG-TCTGAGCCAATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTCAG
** *
33432809 TGCCCGCACGCTCATTTCATGGGTTGACTTAG
127 CACCCGCACGCCCATTTCATGGGTTGACTTAG
* * * * * *
33432841 GCATACGGAGTCCATTCCCAATCTAAGATCAGATCAAACCGATGGTTACGGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCAAGGGTTGCGGTAGCAGGATCGACA
*
33432906 GCATGCAG
66 GCACGCAG
33432914 GGTTGCGCCC
Statistics
Matches: 186, Mismatches: 40, Indels: 11
0.78 0.17 0.05
Matches are distributed among these distances:
157 3 0.02
158 58 0.31
159 120 0.65
160 5 0.03
ACGTcount: A:0.22, C:0.29, G:0.29, T:0.21
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCAAGGGTTGCGGTAGCAGGATCGACA
GCACGCAGAGGGGTCTGAGCCAATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTCAGCACC
CGCACGCCCATTTCATGGGTTGACTTAG
Found at i:33432987 original size:26 final size:26
Alignment explanation
Indices: 33432951--33433003 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
33432941 GTTGGCTTAG
*
33432951 GCATACAGAGTTCCTT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
33432977 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
33433003 G
1 G
33433004 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:33433708 original size:26 final size:26
Alignment explanation
Indices: 33433672--33433724 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
33433662 GTTGACTTAG
*
33433672 GCATACCGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
33433698 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
33433724 G
1 G
33433725 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.30, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:33434833 original size:26 final size:26
Alignment explanation
Indices: 33434788--33434840 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
33434778 GTTGACTTAG
33434788 GCATACGAAGTGCATCCCCAGTCTAA
1 GCATACGAAGTGCATCCCCAGTCTAA
* * *
33434814 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTGCATCCCCAGTCTAA
33434840 G
1 G
33434841 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACGAAGTGCATCCCCAGTCTAA
Found at i:33435106 original size:159 final size:158
Alignment explanation
Indices: 33434899--33435317 Score: 434
Period size: 159 Copynumber: 2.6 Consensus size: 158
33434889 GGGATCGGGT
** *
33434899 CGATCCCCGACTTGCACATTCTGCCTCTAT-GGCCGGCTGAGTACCCGCACGCCCGTTTCGTGGG
1 CGAT-CCCGACTTGCACATTCTGCCTCT-TCGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
* * ** * *
33434963 TTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACTAG-ACTGAGGGTTGTGGCAGC
64 TTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAACTAGAACCAAGGGGTGTAGCAGC
* *
33435027 AGGACCGGA-AGCACATAAAGGGGGACCAGGC
129 AGGACC-GACAACAC-GAAAGGGGGACCAGGC
* * * * *
33435058 CGATCCTCGACTTGCACATTATGCCTCTTCGGTCGGCTCAGCGCCCGCACGCTGGTTGCGTGGGT
1 CGATCC-CGACTTGCACATTCTGCCTCTTCGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
* * ** ** * *
33435123 TGACTTATGCATACGGAGTTCATTCCCA-GTCTAAG-ATTAGGTCGAACCAAGGGGTGTAGCAGT
65 TGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAACTAGAACCAAGGGGTGTAGCAGC
* * * * *
33435186 AGGATCGACAACACGCAGGGGGGATCGGGC
129 AGGACCGACAACACGAAAGGGGGACCAGGC
* ** * *
33435216 CGATCCCCAGCTTGTGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
1 CGATCCCGA-CTTGCACATTCTGCCTCTTCGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
33435281 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
65 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
33435318 TACGGAGTTC
Statistics
Matches: 211, Mismatches: 41, Indels: 16
0.79 0.15 0.06
Matches are distributed among these distances:
157 5 0.02
158 100 0.47
159 103 0.49
160 3 0.01
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (158 bp):
CGATCCCGACTTGCACATTCTGCCTCTTCGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAACTAGAACCAAGGGGTGTAGCAGCAG
GACCGACAACACGAAAGGGGGACCAGGC
Found at i:33435325 original size:26 final size:26
Alignment explanation
Indices: 33435289--33435341 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
33435279 GTTGGCTTAG
33435289 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
33435315 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
33435341 G
1 G
33435342 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:33436547 original size:26 final size:26
Alignment explanation
Indices: 33436511--33436563 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
33436501 TTTTGCTTAT
33436511 GCATACGGAGTTCATTC-CATGTCTAA
1 GCATACGGAGTTCATTCACA-GTCTAA
33436537 GCATACGGAGTTCATTCACAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
33436563 G
1 G
33436564 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCACAGTCTAA
Found at i:33437532 original size:26 final size:26
Alignment explanation
Indices: 33437502--33437554 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33437492 GTTGACTTAG
*
33437502 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATAAGGAGTTCATTCCC-AGTCTAA
33437528 GCATAAGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAGTCTAA
33437554 G
1 G
33437555 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCCAGTCTAA
Found at i:33439800 original size:159 final size:157
Alignment explanation
Indices: 33439531--33440000 Score: 426
Period size: 159 Copynumber: 3.0 Consensus size: 157
33439521 CTAAGATCAG
** * * * * * *
33439531 ACCAGACCGAGGGTTACGGCAACAGGATCGATAGCACGCAG-GGGGGATCGGGTCGATCCCCGGC
1 ACCAGACCGAGGGTTGTGACAGCAGGACCAACAGCACGCAGAGAGGGATCGGGTCGATCCCCGGC
* * * * *
33439595 TTGTGCATTCTACCTCTCCGACTGGCTGAGTGCCTGCACGCCCGTTTCGTGGGTTGGCTTAGGCA
66 TTGTGCATTCTACCTCTCCG--TCGCTGAGCGCCCGAACGCTCGTTTCGTGGGTTGGCTTAGGCA
*
33439660 TAGGGAGTTCATTCCATGTCTAAGGCCCA
129 TAGGGAGTTCATTCCATGTCTAAGACCCA
* * *
33439689 ATCAGACCGAGGGTTGTGACAGCAGGACCAACAGCATGTAGAGAGGGATCGGGTCGATCCCCGGC
1 ACCAGACCGAGGGTTGTGACAGCAGGACCAACAGCACGCAGAGAGGGATCGGGTCGATCCCCGGC
* * * * * *
33439754 TTGTGCATTTTACCTCTCCAGTCAGCTCAGCGCCCGAACGCTCGTTTCATTGGTTGACTTAAGCA
66 TTGTGCATTCTACCTCTCC-GTC-GCTGAGCGCCCGAACGCTCGTTTCGTGGGTTGGCTTAGGCA
** * **
33439819 TACAGAGTTCATTCCCA-GTCTAAGATCGG
129 TAGGGAGTTCATT-CCATGTCTAAGACCCA
* * * * * * * * *
33439848 ACCGGACCGAGGGTTGTGACAGCAGGATCGACAGCACGCAGAGA-GGACCAGGCCGGTCCCTGAC
1 ACCAGACCGAGGGTTGTGACAGCAGGACCAACAGCACGCAGAGAGGGATCGGGTCGATCCCCGGC
** * * * * *
33439912 TTACGTATTCTGCCTCTCCGGTCGACTGATCGCCCGTACACTCGTTTCGTGGGTTGGCTTAGGCA
66 TTGTGCATTCTACCTCTCC-GTCG-CTGAGCGCCCGAACGCTCGTTTCGTGGGTTGGCTTAGGCA
* *
33439977 T-GCGAAGTTTATTCCATGTCTAAG
129 TAG-GGAGTTCATTCCATGTCTAAG
33440001 CATACGAAGT
Statistics
Matches: 247, Mismatches: 58, Indels: 14
0.77 0.18 0.04
Matches are distributed among these distances:
157 4 0.02
158 110 0.45
159 129 0.52
160 4 0.02
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (157 bp):
ACCAGACCGAGGGTTGTGACAGCAGGACCAACAGCACGCAGAGAGGGATCGGGTCGATCCCCGGC
TTGTGCATTCTACCTCTCCGTCGCTGAGCGCCCGAACGCTCGTTTCGTGGGTTGGCTTAGGCATA
GGGAGTTCATTCCATGTCTAAGACCCA
Found at i:33440003 original size:26 final size:26
Alignment explanation
Indices: 33439974--33440026 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
33439964 GTTGGCTTAG
* *
33439974 GCATGCGAAGTTTATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
33440000 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
33440026 G
1 G
33440027 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:33440424 original size:27 final size:29
Alignment explanation
Indices: 33440384--33440440 Score: 73
Period size: 28 Copynumber: 2.0 Consensus size: 29
33440374 GTTGACTTAG
33440384 GCATACGGAAGTTCAATCCCCA-GTCTAA
1 GCATACGGAAGTTCAATCCCCAGGTCTAA
* * *
33440412 GCATATGG-AGTTCATTTCCCAGGTCTAA
1 GCATACGGAAGTTCAATCCCCAGGTCTAA
33440440 G
1 G
33440441 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 11 0.44
28 14 0.56
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (29 bp):
GCATACGGAAGTTCAATCCCCAGGTCTAA
Found at i:33441291 original size:26 final size:26
Alignment explanation
Indices: 33441241--33441293 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
33441231 GTTGACTTAG
*
33441241 GCATACGAAGTTCATCCCCAATCTAA
1 GCATACGAAGTTCATCCACAATCTAA
* *
33441267 GCATACGAAGTTCATTCACAGTCTAA
1 GCATACGAAGTTCATCCACAATCTAA
33441293 G
1 G
33441294 ATTGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.34, C:0.26, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCACAATCTAA
Found at i:33441775 original size:26 final size:26
Alignment explanation
Indices: 33441739--33441791 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
33441729 GTTGGCTTAG
33441739 GCATACAGAGTTCATTCC-ATGTCTAA
1 GCATACAGAGTTCATTCCTA-GTCTAA
33441765 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
33441791 G
1 G
33441792 ATTGAACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:33441915 original size:183 final size:183
Alignment explanation
Indices: 33441582--33441949 Score: 481
Period size: 183 Copynumber: 2.0 Consensus size: 183
33441572 GTTGACTTAG
* * * *
33441582 GCATACAGAGTTCATTCGCAGTCCAAGATTGGACCGGATCGAGTGTTGCGGCAGCAAGATCGATA
1 GCATACAGAGTTCATTCGCAGTCCAAGATTGAACCAGATCGAGGGTTGCGGCAGCAAGATCGACA
* * *
33441647 GCACGCAGAGGGGATCGGGTCGGTCCCCGGCTTGCGCATTCTGCCTTTCGATCGGCTGAGCACCC
66 GCACGCAGAGGGGATCGGCTCGATCCCCGGCTTGCGCATTCTGCCTTCCGATCGGCTGAGCACCC
* * * *
33441712 TCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
131 GCACGCCCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
* * *
33441765 GCATACAGAGTTCATTC-CTAGTCTAAGATTGAACCAGATCGAGGGTTGCGGTAGCATGATCGAC
1 GCATACAGAGTTCATTCGC-AGTCCAAGATTGAACCAGATCGAGGGTTGCGGCAGCAAGATCGAC
* * * **
33441829 AGCACGTA-CGGGGATCGAGCT-GATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGTG
65 AGCACGCAGAGGGGATCG-GCTCGATCCCCGGCTTGCGCATTCTGCCT-TCCGATCGGCTGAGCA
* * **
33441892 CTCGCATGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
128 CCCGCACGCCCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
33441948 GC
1 GC
33441950 CCCAGTCAGA
Statistics
Matches: 159, Mismatches: 23, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
182 33 0.21
183 126 0.79
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (183 bp):
GCATACAGAGTTCATTCGCAGTCCAAGATTGAACCAGATCGAGGGTTGCGGCAGCAAGATCGACA
GCACGCAGAGGGGATCGGCTCGATCCCCGGCTTGCGCATTCTGCCTTCCGATCGGCTGAGCACCC
GCACGCCCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
Found at i:33442082 original size:499 final size:498
Alignment explanation
Indices: 33441175--33442097 Score: 1107
Period size: 499 Copynumber: 1.8 Consensus size: 498
33441165 GAGCTGATCT
* *
33441175 CGGCTTGTGCATTATGTCTCTTCGACTGGCTGAGCACCCGCACGCTCATTTCATAGGTTGACTTA
1 CGGCTTGCGCATTATGCCTCTTCGACTGGCTGAGCACCCGCACGCTCATTTCATAGGTTGACTTA
* *
33441240 GGCATACGAAGTTCATCCCCAATCTAAGCATACGAAGTTCATTCACAGTCTAAGATTGGACCGGA
66 GGCATACGAAGTTCATCCCCAATCTAAGCATACGAAGTTCATTCACAGTCTAAGATTGAACCAGA
* ** * * * *
33441305 CTGAGGGTTGCGGTAGTAGGATCGGTAGCATGCAGGGGGGATCGAGCCGATCCTCGGCTTACGTA
131 CTGAGGGTTGCGGTAGCAGGATCGACAGCACGCAGCGGGGATCGAGCCGATCCCCGGCTTACGCA
* * * * * *
33441370 TTCTGCCTTTCTGGCCGACTGAGACCCGTACGTCCGTTTCATGGTTGCTTTAGGCATGGGGAGTT
196 TTCTGCCTCTCCGGCCGACTGAGACCCGCACGCCCATTTCATGGTTGCTTTAGGCATAGGGAGTT
* * * *
33441435 CATTCCATGTCTAAGCCCCAGTCAGACTTAGGGTTGTGGCAGCGGGACTGGTAGCACATAAAAGG
261 CATTCCATGTCTAAGCCCCAGTCAGACTGAGGGTTGTAGCAACGGGACTGGCAGCACATAAAAGG
* * * ** *
33441500 GGACTGGGCTGATCCCCGACTTGTGCATTATGCCTCTCCGATCGGCTCAGCGTATGAATGCTTGT
326 GGACCGGGCTAATCCCCGACTTGCGCATTATGCCTCTCCGATCGGCTCAGCG-ACCAACGCTTGT
*
33441565 TTCATAGGTTGACTTAGGCATACAGAGTTCATTCGCAGTCCAAGATTGGACCGGATCGAGTGTTG
390 TTCATAGGTTGACTTAGGCATACAGAGTGCATTCGCAGTCCAAGATTGGACCGGATCGAGTGTTG
33441630 CGGCAGCAAGATCGATAGCACGCAGAGGGGATCGGGTCGGTCCC
455 CGGCAGCAAGATCGATAGCACGCAGAGGGGATCGGGTCGGTCCC
* * * * * *
33441674 CGGCTTGCGCATTCTGCCT-TTCGA-TCGGCTGAGCACCCTCACGCTCGTTTCGTGGGTTGGCTT
1 CGGCTTGCGCATTATGCCTCTTCGACT-GGCTGAGCACCCGCACGCTCATTTCATAGGTTGACTT
* *
33441737 AGGCATAC-AGAGTTCAT-TCCATGTCTAAGCATAC-AGAGTTCATTC-CTAGTCTAAGATTGAA
65 AGGCATACGA-AGTTCATCCCCA-ATCTAAGCATACGA-AGTTCATTCAC-AGTCTAAGATTGAA
* * *
33441798 CCAGA-TCGAGGGTTGCGGTAGCATGATCGACAGCACGTA-CGGGGATCGAGCTGATCCCCGGCT
126 CCAGACT-GAGGGTTGCGGTAGCAGGATCGACAGCACGCAGCGGGGATCGAGCCGATCCCCGGCT
* * * * * *
33441861 TGCGCATTCTGCCTCTCCGGTCGGCTGAGTGCTCGCATGCCCATTTCATGGGTTGGC-TTAGGCA
190 TACGCATTCTGCCTCTCCGGCCGACTGAG-ACCCGCACGCCCATTTCAT-GGTT-GCTTTAGGCA
33441925 TAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGA-TCGAGGGTTGTAGCAACGGGACCT-GCAG
252 TAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACT-GAGGGTTGTAGCAACGGGA-CTGGCAG
* * * * * * *
33441988 CACGT-AGAGAGGGACCGGGTTAATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGTTGAGC-A
315 CACATAAAAG-GGGACCGGGCTAATCCCCGACTTGCGCATTATGCCTCTCCGATCGGCTCAGCGA
* * * * *
33442051 CCCACACGTTTGTTTCGTGGGTTGGCTTAGGCATACGGAGTGCATTC
379 -CCA-ACGCTTGTTTCATAGGTTGACTTAGGCATACAGAGTGCATTC
33442098 CATGTCTAAG
Statistics
Matches: 353, Mismatches: 57, Indels: 28
0.81 0.13 0.06
Matches are distributed among these distances:
497 53 0.15
498 133 0.38
499 163 0.46
500 4 0.01
ACGTcount: A:0.20, C:0.25, G:0.29, T:0.26
Consensus pattern (498 bp):
CGGCTTGCGCATTATGCCTCTTCGACTGGCTGAGCACCCGCACGCTCATTTCATAGGTTGACTTA
GGCATACGAAGTTCATCCCCAATCTAAGCATACGAAGTTCATTCACAGTCTAAGATTGAACCAGA
CTGAGGGTTGCGGTAGCAGGATCGACAGCACGCAGCGGGGATCGAGCCGATCCCCGGCTTACGCA
TTCTGCCTCTCCGGCCGACTGAGACCCGCACGCCCATTTCATGGTTGCTTTAGGCATAGGGAGTT
CATTCCATGTCTAAGCCCCAGTCAGACTGAGGGTTGTAGCAACGGGACTGGCAGCACATAAAAGG
GGACCGGGCTAATCCCCGACTTGCGCATTATGCCTCTCCGATCGGCTCAGCGACCAACGCTTGTT
TCATAGGTTGACTTAGGCATACAGAGTGCATTCGCAGTCCAAGATTGGACCGGATCGAGTGTTGC
GGCAGCAAGATCGATAGCACGCAGAGGGGATCGGGTCGGTCCC
Found at i:33442117 original size:26 final size:26
Alignment explanation
Indices: 33442081--33442133 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
33442071 GTTGGCTTAG
*
33442081 GCATACGGAGTGCATT-CCATGTCTAA
1 GCATACCGAGTGCATTCCCA-GTCTAA
*
33442107 GCATACCGAGTTCATTCCCAGTCTAA
1 GCATACCGAGTGCATTCCCAGTCTAA
33442133 G
1 G
33442134 AGTTTAAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACCGAGTGCATTCCCAGTCTAA
Found at i:33444395 original size:26 final size:25
Alignment explanation
Indices: 33444365--33444416 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 25
33444355 GTTGGCTTAG
33444365 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCA-GTCTAA
33444391 GCATACAGAGTTCATTCCAGTCTAA
1 GCATACAGAGTTCATTCCAGTCTAA
33444416 G
1 G
33444417 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 7 0.27
26 19 0.73
ACGTcount: A:0.31, C:0.23, G:0.17, T:0.29
Consensus pattern (25 bp):
GCATACAGAGTTCATTCCAGTCTAA
Found at i:33445121 original size:26 final size:26
Alignment explanation
Indices: 33445085--33445137 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
33445075 GTTGACTTAG
33445085 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
33445111 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
33445137 G
1 G
33445138 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:33445460 original size:26 final size:26
Alignment explanation
Indices: 33445424--33445476 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33445414 GTTGGCTTAG
33445424 GCATACAGAGTTCATTCC-ATGTCTAA
1 GCATACAGAGTTCATTCCTA-GTCTAA
*
33445450 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
33445476 G
1 G
33445477 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:33445813 original size:26 final size:26
Alignment explanation
Indices: 33445777--33445832 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
33445767 TGGGTTGACT
33445777 TAAGCATACGGAGTTCATCCCCAGTC
1 TAAGCATACGGAGTTCATCCCCAGTC
*
33445803 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATCCCCAGTC
33445829 TAAG
1 TAAG
33445833 ATCAGACCAG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.25
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATCCCCAGTC
Done.