Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 366 of 402
Found at i:33446006 original size:355 final size:338
Alignment explanation
Indices: 33445059--33446149 Score: 1089
Period size: 355 Copynumber: 3.2 Consensus size: 338
33445049 TGAGCGCCCA
*
33445059 CACGCTCGTTTCGTGAGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTC
1 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTC
* * * * *
33445124 ATTCCCAGTCTAAGATCGGACCGGATCAAGGGTTGCGATAGCAAGATTGGCGGCACGCAGAGGGG
66 ATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCG-TAGCAGGATCGGCAGCACGCAGGGGGG
* * ** * * *
33445189 ACCAGGCCGATCCCCGACTTACGCATTTGCCTTTCCGACCAACTAAGCGCCTGCATGCCCGTTTC
130 ACCAGGCCGATCCCC-AGTTGCGCATTTGCCTTTCCGACCGGCTGAGCGCCCGCATGCCTGTTTC
* * * * * *
33445254 ATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGACT-AAGCCCAGTCGGACTGAGGGTTGTGG
194 GTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAACCCCAGCCAGACCGAGGGTTGTGG
33445318 CAGCGGGACTGGCAGCACGCAGAGGGATCGAGTCGATCTTCGGCTTACGCATTATTCCTCTCCGA
259 CAGCGGGACTGGCAGCACGCAGAGGGATCGAGTCGATCTTCGGCTTACGCATTATTCCTCTCCGA
**
33445383 CAGGCTCAGTGCTCG
324 CAGGCTCAACGCTCG
* * * *
33445398 CACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCAT-TCCATGTCTAAGCATACGGAGTT
1 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGCATACGGAGTT
* * * * * * * *
33445462 CATTCCTAGTCTAAGATCGGATCGGGACCGAGGGTTGCGGCAGTAGGATCGACAACATGCAGGGG
65 CATTCCCAGTCTAAGATCGGA-CCGGATCGAGGGTTGC-GTAGCAGGATCGGCAGCACGCAGGGG
* * * * * * *
33445527 GGACCAAGCTGATCCCCGGCTTGTGCATTTTGCCTTTCCGATCGGTTGAGGGCCCGCATG-CTCG
128 GGACCAGGCCGATCCCCAG-TTGCGCA-TTTGCCTTTCCGACCGGCTGAGCGCCCGCATGCCT-G
* * *
33445591 TTTCGTGGGTTGGTTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTT
190 TTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAACCCCAGCCAGACCGAGGGTT
* * *
33445656 GTGGCTGTAGGACTGATAGTGGGCTCGGTAGCACGCAGAGGGGGATCG-GGCTGATCTTCGGCTT
255 GTGGC---A-G-C-----G-GGACT-GGCAGCACGCAGA--GGGATCGAGTC-GATCTTCGGCTT
* *
33445720 ACGCATT-TTGCCTCTCCGACCGGCTGAACGC-CTG
305 ACGCATTATT-CCTCTCCGACAGGCTCAACGCTC-G
* * *
33445754 GATGCTCGTTTCGTGGGTTGACTTAAGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTC
1 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTC
* * * *
33445819 ATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTACAGTAGCAGGATCGGTAGCACGCAGGGGGG
66 ATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGC-GTAGCAGGATCGGCAGCACGCAGGGGGG
* * * * ** * *
33445884 ATCGGGCCGATCCCCTAGTTGCACATTCTGCCTCTGTGGCCGGCTGAGCGCCCGCACGCCTGTTT
130 ACCAGGCCGATCCCC-AGTTGCGCATT-TGCCTTTCCGACCGGCTGAGCGCCCGCATGCCTGTTT
* * *
33445949 CGTGGGTTGGCTTAGGCATAGGGAGTTCATTTCATGTCTAAACCCCAACCAGACCGAGGGTTGTG
193 CGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAACCCCAGCCAGACCGAGGGTTGTG
* * * * * * * * * * *
33446014 GCAGCAGCACCGGAAGCACGCAAAGGGGGACCGAGCCGATCCTCGGCTTGCACATTATGCCTCTT
258 GCAGCGGGACTGGCAGCACGC--AGAGGGATCGAGTCGATCTTCGGCTTACGCATTATTCCTC-T
* * ** *
33446079 CGGTC-GGCTCAGTGCCCG
320 CCGACAGGCTCAACGCTCG
* * *
33446097 CACGCTCGTTTCGTGGGTTGACCTATGCATACGGAGTTCATTCCCAGTCTAAG
1 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
33446150 ATCAAACCAG
Statistics
Matches: 608, Mismatches: 110, Indels: 64
0.78 0.14 0.08
Matches are distributed among these distances:
338 3 0.00
339 75 0.12
340 50 0.08
341 65 0.11
342 22 0.04
343 91 0.15
344 10 0.02
345 3 0.00
346 1 0.00
347 1 0.00
350 1 0.00
351 1 0.00
352 2 0.00
353 4 0.01
354 14 0.02
355 143 0.24
356 119 0.20
357 3 0.00
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (338 bp):
CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTC
ATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGTAGCAGGATCGGCAGCACGCAGGGGGGA
CCAGGCCGATCCCCAGTTGCGCATTTGCCTTTCCGACCGGCTGAGCGCCCGCATGCCTGTTTCGT
GGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAACCCCAGCCAGACCGAGGGTTGTGGCA
GCGGGACTGGCAGCACGCAGAGGGATCGAGTCGATCTTCGGCTTACGCATTATTCCTCTCCGACA
GGCTCAACGCTCG
Found at i:33446285 original size:158 final size:157
Alignment explanation
Indices: 33445806--33446307 Score: 555
Period size: 158 Copynumber: 3.2 Consensus size: 157
33445796 CCCAGTCTAA
* * * * *
33445806 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGACCAGATCGAGGGTTACAGTAGCAGGATCGGT
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAAACCAGACCGAGGGTTGCAGCAGCAGGATCGGA
* * *
33445870 AGCACGCAGGGGGGATCGGGCCGATCCCCTAG-TTGCACATTCTGCCTCTGTGGCCGGCTGAGCG
65 AGCACGCAGGGGGGATCGAGCCGAT-CCTTGGCTTGCACATTCTGCCTCT-TGGCCGGCTGAGCG
33445934 CCCGCACGC-CTGTTTCGTGGGTTGGCTTAG
128 CCCGCACGCTC-GTTTCGTGGGTTGGCTTAG
* * * * ** * *
33445964 GCATAGGGAGTTCATTTCATGTCTAA-ACCCCAACCAGACCGAGGGTTGTGGCAGCAGCACCGGA
1 GCATACGGAGTTCATTCCATGTCTAAGA-TCAAACCAGACCGAGGGTTGCAGCAGCAGGATCGGA
* * * * * * *
33446028 AGCACGCAAAGGGGGACCGAGCCGATCCTCGGCTTGCACATTATGCCTCTTCGGTCGGCTCAGTG
65 AGCACGC-AGGGGGGATCGAGCCGATCCTTGGCTTGCACATTCTGCCTCTT-GGCCGGCTGAGCG
* * *
33446093 CCCGCACGCTCGTTTCGTGGGTTGACCTAT
128 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* *
33446123 GCATACGGAGTTCATTCCCA-GTCTAAGATCAAACCAGACCAAGGGTTGCAGCAGCAGGATCGGC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAAACCAGACCGAGGGTTGCAGCAGCAGGATCGGA
* * * * * * *
33446187 AGAACACAGGGGGGATCGAACCGATCCTTGGCTTGCGCATTCTACCTCTCTGACCGGCTGAACGC
65 AGCACGCAGGGGGGATCGAGCCGATCCTTGGCTTGCACATTCTGCCTCT-TGGCCGGCTGAGCGC
* *
33446252 CCGTACGCTCGTTTCATGGGTTGGCTTAG
129 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
33446281 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
33446308 CATACGGAGT
Statistics
Matches: 279, Mismatches: 55, Indels: 20
0.79 0.16 0.06
Matches are distributed among these distances:
157 6 0.02
158 148 0.53
159 121 0.43
160 4 0.01
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.22
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAAACCAGACCGAGGGTTGCAGCAGCAGGATCGGAA
GCACGCAGGGGGGATCGAGCCGATCCTTGGCTTGCACATTCTGCCTCTTGGCCGGCTGAGCGCCC
GCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:33446311 original size:26 final size:26
Alignment explanation
Indices: 33446281--33446333 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
33446271 GTTGGCTTAG
33446281 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
33446307 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
33446333 G
1 G
33446334 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:33446448 original size:184 final size:184
Alignment explanation
Indices: 33446123--33446492 Score: 458
Period size: 184 Copynumber: 2.0 Consensus size: 184
33446113 GTTGACCTAT
33446123 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCAAGGGTTGCAGCAGCAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCAAGGGTTGCAGCAGCAGGATCGGCA
* * ** *
33446188 GAACACAGGGGGGATCGAACCGATCCTTGGCTTGCGCATTCTACCTCTCTGACCGGCTGAACGCC
66 CAACACAGGGGGGATCCAACCGATCCCCGGCTTGCGCATTCTACCTCTCCGACCGGCTGAACGCC
*
33446253 CGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
131 CGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* ** * * * * *
33446307 GCATACGGAGTTCATTCCTAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGTAGGATC-G-A
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCAAGGGTTGCAGCAGCAGGATCGGCA
* * * * * * * **
33446370 CAACATGCAGGGGGGA-CCAAGCTGATCCCCGGCTTGTGCATTTTGCCTTTCCGATCGGTTGAGG
66 CAACA--CAGGGGGGATCCAA-CCGATCCCCGGCTTGCGCATTCTACCTCTCCGACCGGCTGAAC
* * *
33446434 GCCCGCATGCTCGTTTCGTGGGTTGGTTTAGGCATACGGAGTTCATTCCATGTCTAA
128 GCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
33446491 GC
1 GC
33446493 CCCAGCCAGA
Statistics
Matches: 157, Mismatches: 26, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
182 5 0.03
183 4 0.03
184 148 0.94
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.25
Consensus pattern (184 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCAAGGGTTGCAGCAGCAGGATCGGCA
CAACACAGGGGGGATCCAACCGATCCCCGGCTTGCGCATTCTACCTCTCCGACCGGCTGAACGCC
CGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
Found at i:33446669 original size:26 final size:26
Alignment explanation
Indices: 33446633--33446688 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
33446623 TGGGTTGACT
33446633 TAAGCATACGGAGTTCATCCCCAGTC
1 TAAGCATACGGAGTTCATCCCCAGTC
*
33446659 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATCCCCAGTC
33446685 TAAG
1 TAAG
33446689 ATCAGACGGA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.25
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATCCCCAGTC
Found at i:33446852 original size:354 final size:355
Alignment explanation
Indices: 33446038--33446870 Score: 903
Period size: 354 Copynumber: 2.4 Consensus size: 355
33446028 AGCACGCAAA
* * * * ** * *
33446038 GGGGGACCGAGCCGATCCTCGGCTTGCACATTATGCCTCTTCGGTCGGCTCAGTGCCCGCACGCT
1 GGGGGACCAAGCCGATCCCCGGCTTGCACATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCT
* * * ** * * *
33446103 CGTTTCGTGGGTTGACCTATGCATACGGAGTTCATTCCCA-GTCTAAGATCAAACCAGACCAAGG
66 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAGCCAGACCGAGG
** * * * * ** *
33446167 G-T-T-GC---A-G-C----AGCAGGATCGGCAGAACACAG-GGGGGATCGAACCGATCCTT-GG
130 GTTGTGGCTGTAGGACTGATAGTGGGCTCGGTAGCACGCAGAGGGGGATCGGGCTGAT-CTTCGG
* * * * * *
33446218 CTTGCGCATTCTACCTCTCTGACCGGCTGAACGCCCGTACGCTCGTTTCATGGGTTGGCTTAGGC
194 CTTACGCATTCTACCTCTCCGACCGGCTGAACGCCCGGACGCTCGTTTAATGGGTTGACTTAAGC
* * *
33446283 ATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCGGATCGGACCG
259 ATACGGAGTTCATCCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCG
* * * *
33446348 AGGGTTGCGGCAGTAGGATCGACAACATGCAG
324 AGGGTTACAGCAGCAGGATCGACAACACGCAG
* ** * * * * * *
33446380 GGGGGACCAAGCTGATCCCCGGCTTGTGCATTTTGCCTTTCCGATCGGTTGAGGGCCCGCATGCT
1 GGGGGACCAAGCCGATCCCCGGCTTGCACATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCT
*
33446445 CGTTTCGTGGGTTGGTTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGG
66 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGG
33446510 TTGTGGCTGTAGGACTGATAGTGGGCTCGGTAGCACGCAGAGGGGGATCGGGCTGATCTTCGGCT
131 TTGTGGCTGTAGGACTGATAGTGGGCTCGGTAGCACGCAGAGGGGGATCGGGCTGATCTTCGGCT
* * * *
33446575 TACGCATTTTGCCTCTCCGACCGGCTGAACGCCTGGATGCTCGTTTAATGGGTTGACTTAAGCAT
196 TACGCATTCTACCTCTCCGACCGGCTGAACGCCCGGACGCTCGTTTAATGGGTTGACTTAAGCAT
*
33446640 ACGGAGTTCATCCCCA-GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CGGATCGA
261 ACGGAGTTCAT-CCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGA
* ** *
33446703 GGGTTACAGTAGCAGGATCGGTAGCACGCAG
325 GGGTTACAGCAGCAGGATCGACAACACGCAG
* ** ** *
33446734 GGGGGATCGGGCCGATCCCCGAG-TTGCACATTCTGCCTCTGTGGCCGGCTGAGCGCCCGCACGC
1 GGGGGACCAAGCCGATCCCCG-GCTTGCACATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGC
* *
33446798 -CTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTTCATGTCTAAGCCCCAGCCAGACCGAG
65 TC-GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAG
33446862 GGTTGTGGC
129 GGTTGTGGC
33446871 AGCAGCACCG
Statistics
Matches: 402, Mismatches: 71, Indels: 24
0.81 0.14 0.05
Matches are distributed among these distances:
341 3 0.01
342 104 0.26
343 1 0.00
344 1 0.00
345 2 0.00
348 1 0.00
349 1 0.00
350 1 0.00
353 1 0.00
354 163 0.41
355 121 0.30
356 3 0.01
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (355 bp):
GGGGGACCAAGCCGATCCCCGGCTTGCACATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCT
CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGG
TTGTGGCTGTAGGACTGATAGTGGGCTCGGTAGCACGCAGAGGGGGATCGGGCTGATCTTCGGCT
TACGCATTCTACCTCTCCGACCGGCTGAACGCCCGGACGCTCGTTTAATGGGTTGACTTAAGCAT
ACGGAGTTCATCCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAG
GGTTACAGCAGCAGGATCGACAACACGCAG
Found at i:33447123 original size:154 final size:155
Alignment explanation
Indices: 33446662--33447149 Score: 491
Period size: 159 Copynumber: 3.1 Consensus size: 155
33446652 CCCAGTCTAA
* ** * * * *
33446662 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACGGATCGAGGGTTACAGTAGCAGGATCGGTAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAACCGAGGGTTGCAGCAGCAGGATCGAT-G
* **
33446727 CACGCAGGGGGGATCGGGCCGATCCCCGAG-TTGCACATTCTGCCTCTGTGGCCGGCTGAGCGCC
65 CACGCAGGGGGGATCGGGCCGATCCCTG-GCTTG-ACATTCTGCCTCTCCGGCCGGCTGAGCGCC
33446791 CGCACGC-CTGTTTCGTGGGTTGGCTTAG
128 CGCACGCTC-GTTTCGTGGGTTGGCTTAG
* * ** * * ** * *
33446819 GCATAGGGAGTTCATT-TCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCAGCACCGGA
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCAAACCA-ACCGAGGGTTGCAGCAGCAGGATC-GA
* * * * * * * * *
33446883 AGCACGCAAAGGGGGACCGGGTCGAT-CCTCGGCTTGCACATTATGCCTCTTCGGTCGGCTCAGT
63 TGCACGC-AGGGGGGATCGGGCCGATCCCT-GGCTTG-ACATTCTGCCTCTCCGGCCGGCTGAGC
* * *
33446947 GCCCGCACGCTCGTTTCGTGGGTTGACCTAT
125 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* *
33446978 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAACCAAGGGTTGCAGCAGCAGGATCGATGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAACCGAGGGTTGCAGCAGCAGGATCGATGC
* * * * *
33447043 ACACAGGGGGGATCGGACCGATCCCTGGCTTG-CATTCTACCTCTCCGACCGGCTGAACGCCCGC
66 ACGCAGGGGGGATCGGGCCGATCCCTGGCTTGACATTCTGCCTCTCCGGCCGGCTGAGCGCCCGC
*
33447107 ACGCTCGTTTCATGGGTTGGCTTAG
131 ACGCTCGTTTCGTGGGTTGGCTTAG
33447132 GCATACGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
33447150 ATGTATAAGC
Statistics
Matches: 261, Mismatches: 61, Indels: 21
0.76 0.18 0.06
Matches are distributed among these distances:
154 63 0.24
156 22 0.08
157 33 0.13
158 45 0.17
159 95 0.36
160 3 0.01
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (155 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAACCGAGGGTTGCAGCAGCAGGATCGATGC
ACGCAGGGGGGATCGGGCCGATCCCTGGCTTGACATTCTGCCTCTCCGGCCGGCTGAGCGCCCGC
ACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:33449455 original size:158 final size:159
Alignment explanation
Indices: 33449099--33449456 Score: 373
Period size: 158 Copynumber: 2.3 Consensus size: 159
33449089 TGACCTTTTT
** * * * *
33449099 ATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGATTGAGGGTTGTGG
1 ATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGACCCAACCAGATCGAAGGTTGTGG
* ** * * * *
33449164 CAGCGGGATCGGCGGCACACAGAGGGGGATCAGGCCGATCTCCGGCCTGCGCATTATGCCTTTCT
66 CAGCAGGATCAACAGCACACAGAGGGGGATCAGGCCGATCTCCGGCCTACGCATTATGCCTCTCC
*
33449229 GGCCGGCTCAGCGCCCACACGCTCATTTC
131 GGCCGGCTCAACGCCCACACGCTCATTTC
* * * * * **
33449258 ATGGGTTGACTTAGGCATACAAAATTCATTCCCA-ATCTAAGACCGAATTAGATCGAAGGTTGTG
1 ATGGGTTGGCTTAGGCATACAGAGTTCATT-CCATGTCTAAGACCCAACCAGATCGAAGGTTGTG
* ** * * * *
33449322 GCAGCAGGATCAATAGCACGTAG-GGGGGATCGGGCCGATC-CCTTGCTTACGCATTCTGCCTCT
65 GCAGCAGGATCAACAGCACACAGAGGGGGATCAGGCCGATCTCC-GGCCTACGCATTATGCCTCT
* *
33449385 CCGGTCGGCT-AACTGCCCGCACGCTCATTTC
129 CCGGCCGGCTCAAC-GCCCACACGCTCATTTC
* *
33449416 GTGGGTTGGCTTAGGCATACAGAGTTTATTCCATGTCTAAG
1 ATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAG
33449457 CATATGGAGT
Statistics
Matches: 159, Mismatches: 36, Indels: 9
0.78 0.18 0.04
Matches are distributed among these distances:
157 7 0.04
158 86 0.54
159 63 0.40
160 3 0.02
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.25
Consensus pattern (159 bp):
ATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGACCCAACCAGATCGAAGGTTGTGG
CAGCAGGATCAACAGCACACAGAGGGGGATCAGGCCGATCTCCGGCCTACGCATTATGCCTCTCC
GGCCGGCTCAACGCCCACACGCTCATTTC
Found at i:33450340 original size:26 final size:26
Alignment explanation
Indices: 33450311--33450363 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33450301 GTTGGTTTAG
*
33450311 GCATACGAAGTTTATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
33450337 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
33450363 G
1 G
33450364 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:33450745 original size:26 final size:26
Alignment explanation
Indices: 33450716--33450768 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
33450706 GTTGACTTAG
33450716 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
33450742 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
33450768 G
1 G
33450769 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:33452102 original size:26 final size:26
Alignment explanation
Indices: 33452073--33452125 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33452063 GTTGGCTTAG
*
33452073 GCATACAGAGTTTATTCC-ATGTCTAA
1 GCATACAGAGTTCATTCCTA-GTCTAA
33452099 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
33452125 G
1 G
33452126 ATCGAATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.32
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:33452198 original size:855 final size:850
Alignment explanation
Indices: 33450680--33452290 Score: 1883
Period size: 855 Copynumber: 1.9 Consensus size: 850
33450670 TCCGGCCGGT
* * * * *
33450680 TGAGCACCCGCACGCTCGTTCCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCA
1 TGAGCACCCGCACACTCGTTCCATAGATTGACTTAGGCATACGAAGTTCATCCCCAATCTAAGCA
* * *
33450745 TACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGTAACAGCAGGATCGACAGCA
66 TACAGAGTTCATTCACAGTCTAAGATCAGACCGGACCGAGGGTTGTAACAGCAGGATCGACAGCA
* *
33450810 CGCAGGGGGGATCGGGCCGATCTCTGGCTTACGCATTCTACCTTTTCAGCCGGCTGAGCACCCGC
131 CGCAGGGGGGATCGAGCCGATCTCTGGCTTACGCATTCTACCTTTTCAGCCGACTGAGCACCCGC
* *
33450875 ACGTCCGTTTCTTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACC
196 ACGTCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACC
* * * *
33450940 GAGGGTTGTGGTAATGGGAACGACAGCACGCAGAGGGGGATCGGGCTTATCCCCGACTTACGTAT
261 GAGGGTTGTGGCAACGGGAACGACAGCACGCAGAGGGGGATCGGGCTGATCCCCGACTTACGCAT
* * * * *
33451005 TATGCCTCTCGGGTGGTTCAACGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTT
326 TATGCCTCTCCGGTGGCTCAACGCACGAACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTT
* * * * * * *
33451070 CATTCCTAGTCTAAGATTGGGCCGTACCGAGGGTTACGACAGTAGGATCGACAACATGCAAGGGG
391 CATTCCTAGTCCAAGATTGGACCGGACCGAGGCTTACGACAGCAAGATCGACAACACGCAAGGGG
* * *
33451135 GGACTGAGCCGGTCCCTGGCCTATGCATCTGCCTCAACGCCCGTACGCTCGTTTCGTGGGTTGGC
456 GGACTGAGCCGGTCCCCGGCCTACGCATCTGCCTCAACGCCCGTACGCTCGTTTCATGGGTTGGC
* ** * * * *
33451200 TTAGGCATACGGAGTTCATTCCATGTCTAAGCATATGGAGTTCATTCCCAGTTTAAGTTTGGATC
521 TTAGGCATACAGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGAATC
* * * * *
33451265 ATACCGAGGGTTGTGGTAGTAGGACCAACAGTAGGATCAGCAGCATGCAGGGGGGGACCGGGCCA
586 AGACCGAGGGTTGTCG-AGTAGGA-CAACAGTACGATCAGCAGCATACA---GGGGACCGAGCCA
* * *
33451330 ATCCCTAGCTTGCGCATTCTGCCTCTCCGGTCGGTTGAGTGCCCACACGCTCATTTAATGGGTTG
646 ATCCCCAGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGTGCCCACACGCCCATTTAATGGGTTG
*
33451395 GCTTAGGCATACGGAGTTTATTCCATGTCTAAGCCCCAGTCGGACTGAGGGTTGCGGTAGGAGGA
711 GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACTGAGGGTTGCGGTAGGAGGA
33451460 TCGGCAGCGAGATCGGCAGCACGCAGAGGGTGATCAAGCTGATCTCGGCTTGTGCATTATGTCTC
776 TCGGCAGCGAGATCGGCAGCACGCAGAGGGTGATCAAGCTGATCTCGGCTTGTGCATTATGTCTC
33451525 TTCGACTGGC
841 TTCGACTGGC
*
33451535 TGAGCACCCGCACACTCGTTTCATAGATTGACTTAGGCATACGAAGTTCATCCCCAATCTAAGCA
1 TGAGCACCCGCACACTCGTTCCATAGATTGACTTAGGCATACGAAGTTCATCCCCAATCTAAGCA
* * ** ** * **
33451600 TATAGAGTTCATTTACAGTCTAAGATTGGACCGGACCGAGGGTTGCT-GTAGTAGGATCGGTAGC
66 TACAGAGTTCATTCACAGTCTAAGATCAGACCGGACCGAGGGTTG-TAACAGCAGGATCGACAGC
* * * * *
33451664 ATGCAGGGGGGATCGAGCCGATC-CTCGGCTTGCGTATTCTACC-TTTCTGGCCGACTGAGTACC
130 ACGCAGGGGGGATCGAGCCGATCTCT-GGCTTACGCATTCTACCTTTTC-AGCCGACTGAGCACC
* *
33451727 CGTACGTCCGTTTCATGGGTTGGCTTAGGCATGGGGAGTTCATTCCATGTCTAAGCCCCAGTCAG
193 CGCACGTCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAG
** * * ** * * * **
33451792 ACTTAGGGTTGTGGCAGCGGGACCGGTAGCACGTAGAGGGGGA-CTGGGCTGATCCTCGGCTTGT
258 ACCGAGGGTTGTGGCAACGGGAACGACAGCACGCAGAGGGGGATC-GGGCTGATCCCCGACTTAC
* * * * *
33451856 GCATTATGCCTCTCCGGTCGGCTCAGCGTATGAATGCTTGTTTCATGGGTTGACTTAGGCATAC-
322 GCATTATGCCTCTCCGGT-GGCTCAACGCACGAACGCTCGTTTCATGGGTTGACTTAGGCATACG
* * * *
33451920 AGAGTTCATTCGC-AGTCCAAGATTGGACCGGATCGAGTGCTGTA-G-TAGCAAGATCGATAGCA
386 A-AGTTCATTC-CTAGTCCAAGATTGGACCGGACCGAG-GCT-TACGACAGCAAGATCGACAACA
* * * * * *
33451982 CGCAGGGGGGGA-TCGGGTCGGTCCCCGGCTTCCGCATTCTGCCTCTCCGATCGGTTGAGTACCC
447 CGCAAGGGGGGACT-GAGCCGGTCCCCGGCCTACGCA-TCTG-C-CT-C-AAC------G--CCC
*
33452046 -TCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTTATTCCATGTCTAAGCATACAGAGT
498 GT-ACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACAGAGT
* * * **
33452110 TCATTCCTAGTCTAAGATCGAATCGGATCGAGGGTTG-CG-GTA-G-CATGA-T-CGA-CAGCA-
562 TCATTCCCAGTCTAAGATCGAATCAGACCGAGGGTTGTCGAGTAGGACAACAGTACGATCAGCAG
* ** * * *
33452167 CATACA-GGGATCGAGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGTGCTCGC
627 CATACAGGGGACCGAGCCAATCCCCAGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGTGCCCAC
* * *
33452231 ATGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTC
692 ACGCCCATTTAATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTC
33452291 AGATCAAGGG
Statistics
Matches: 627, Mismatches: 105, Indels: 48
0.80 0.13 0.06
Matches are distributed among these distances:
854 7 0.01
855 388 0.62
856 104 0.17
857 8 0.01
858 3 0.00
859 7 0.01
860 6 0.01
861 4 0.01
862 1 0.00
863 3 0.00
865 1 0.00
866 3 0.00
867 1 0.00
868 2 0.00
869 89 0.14
ACGTcount: A:0.20, C:0.25, G:0.29, T:0.25
Consensus pattern (850 bp):
TGAGCACCCGCACACTCGTTCCATAGATTGACTTAGGCATACGAAGTTCATCCCCAATCTAAGCA
TACAGAGTTCATTCACAGTCTAAGATCAGACCGGACCGAGGGTTGTAACAGCAGGATCGACAGCA
CGCAGGGGGGATCGAGCCGATCTCTGGCTTACGCATTCTACCTTTTCAGCCGACTGAGCACCCGC
ACGTCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACC
GAGGGTTGTGGCAACGGGAACGACAGCACGCAGAGGGGGATCGGGCTGATCCCCGACTTACGCAT
TATGCCTCTCCGGTGGCTCAACGCACGAACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTT
CATTCCTAGTCCAAGATTGGACCGGACCGAGGCTTACGACAGCAAGATCGACAACACGCAAGGGG
GGACTGAGCCGGTCCCCGGCCTACGCATCTGCCTCAACGCCCGTACGCTCGTTTCATGGGTTGGC
TTAGGCATACAGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGAATC
AGACCGAGGGTTGTCGAGTAGGACAACAGTACGATCAGCAGCATACAGGGGACCGAGCCAATCCC
CAGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGTGCCCACACGCCCATTTAATGGGTTGGCTTA
GGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACTGAGGGTTGCGGTAGGAGGATCGGC
AGCGAGATCGGCAGCACGCAGAGGGTGATCAAGCTGATCTCGGCTTGTGCATTATGTCTCTTCGA
CTGGC
Found at i:33452338 original size:21 final size:21
Alignment explanation
Indices: 33452312--33452358 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
33452302 TGTGGCAACA
33452312 GGACCTACAGCACAAAGAGGG
1 GGACCTACAGCACAAAGAGGG
* **
33452333 GGACCTGCAGCACGTAGAGGG
1 GGACCTACAGCACAAAGAGGG
33452354 GGACC
1 GGACC
33452359 AGGTCAATCC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.30, C:0.26, G:0.38, T:0.06
Consensus pattern (21 bp):
GGACCTACAGCACAAAGAGGG
Found at i:33452472 original size:26 final size:26
Alignment explanation
Indices: 33452436--33452487 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
33452426 GTTGGCTTAG
33452436 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
33452462 GCATACCGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
33452488 AAGTTTAAGC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.29
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:33453462 original size:157 final size:158
Alignment explanation
Indices: 33453191--33453524 Score: 388
Period size: 157 Copynumber: 2.1 Consensus size: 158
33453181 AAGCATATGG
* * * * ** * *
33453191 AGTTCAATCCCAGTCTAAGATCAGACTGGACCAAGGGTTGTGGCAGTAGGATCGGCATCACGTAG
1 AGTTCATTCCCTGTCTAAGATCAGACTGGACCAAGGGTTGCGACAACAGGATCGACATCACGCAG
*
33453256 GGGGGACCGGGCCAATCTTCAACTTGCGCATTATGCCTCTCCGGCCGGCTCAGTG-CTCGCACGC
66 GGGGGACCGGGCCAATCCTCAACTTGCGCATTATGCCTCTCCGGCCGGCTCAGTGCCT-GCACGC
33453320 TCATTTCATGGGTTGACTTAGGCATACGA
130 TCATTTCATGGGTTGACTTAGGCATACGA
*
33453349 AGTTCATTCCCTGTCTAAGATCAGA-TCGGACCGA-GGTTGCGACAACAGGATCGACAAT-ACGC
1 AGTTCATTCCCTGTCTAAGATCAGACT-GGACCAAGGGTTGCGACAACAGGATCGAC-ATCACGC
** * * * * * * *
33453411 AGGGGGGACCGGGCCGGTCCTCAGCTTGTGCATTCTGCCTTTTCGGTCGGCTGAGTGCCTGCACG
64 AGGGGGGACCGGGCCAATCCTCAACTTGCGCATTATGCCTCTCCGGCCGGCTCAGTGCCTGCACG
* ** * *
33453476 CTCATTTCGTTTGTTGGCTTAGGCATACGG
129 CTCATTTCATGGGTTGACTTAGGCATACGA
*
33453506 AGTTCATTCCATGTCTAAG
1 AGTTCATTCCCTGTCTAAG
33453525 CATATGGAGT
Statistics
Matches: 148, Mismatches: 25, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
157 115 0.78
158 33 0.22
ACGTcount: A:0.20, C:0.26, G:0.28, T:0.25
Consensus pattern (158 bp):
AGTTCATTCCCTGTCTAAGATCAGACTGGACCAAGGGTTGCGACAACAGGATCGACATCACGCAG
GGGGGACCGGGCCAATCCTCAACTTGCGCATTATGCCTCTCCGGCCGGCTCAGTGCCTGCACGCT
CATTTCATGGGTTGACTTAGGCATACGA
Found at i:33453534 original size:26 final size:26
Alignment explanation
Indices: 33453498--33453550 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33453488 GTTGGCTTAG
33453498 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
*
33453524 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
33453550 G
1 G
33453551 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:33453892 original size:26 final size:26
Alignment explanation
Indices: 33453862--33453917 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
33453852 TGGGTTGACT
*
33453862 TAAGCATACGGAGTTCATCCCCAGTC
1 TAAGCATACGGAGTTCATCCCCAATC
*
33453888 TAAGCATACGGAGTTCATTCCCAATC
1 TAAGCATACGGAGTTCATCCCCAATC
33453914 TAAG
1 TAAG
33453918 ATCGGACCAG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATCCCCAATC
Found at i:33454556 original size:11 final size:11
Alignment explanation
Indices: 33454536--33454568 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
33454526 CCCGGGGCAC
33454536 CATCGTCAGAG
1 CATCGTCAGAG
*
33454547 CATCGCCAGAG
1 CATCGTCAGAG
33454558 CATCGTCAGAG
1 CATCGTCAGAG
33454569 AGCCTAACCG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.27, C:0.30, G:0.27, T:0.15
Consensus pattern (11 bp):
CATCGTCAGAG
Found at i:33455779 original size:25 final size:25
Alignment explanation
Indices: 33455732--33455779 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
33455722 GTTGACTTAG
* *
33455732 GCATACGGAGTTTATCCCCAGTCAA
1 GCATACGGAGTTCATCCCAAGTCAA
*
33455757 GCATACGGAGTTCATTCCAAGTC
1 GCATACGGAGTTCATCCCAAGTC
33455780 TAAGATTGGA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (25 bp):
GCATACGGAGTTCATCCCAAGTCAA
Found at i:33456223 original size:158 final size:156
Alignment explanation
Indices: 33455757--33456257 Score: 515
Period size: 158 Copynumber: 3.2 Consensus size: 156
33455747 CCCCAGTCAA
* ** * * *
33455757 GCATACGGAGTTCATTCCAAGTCTAAGATTGGACTAGACTGAGGGTTGCGACAGTAAGATCGACA
1 GCATACGGAGTTCATTCCATGTCTAAGATCAGAC-AGACCGAGGGTTGCGGCAGTAGGATCGACA
* * * * *
33455822 GCACGCAGGGGGGATCAGGCCAATCCTCGACTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCC
65 GCACGCAGGGGGGATCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCAGCTGAGCGCC
* * *
33455887 GCACGCCCATTTCGAGGGTTGGCTTAG
130 GCACGCTCGTTTCGTGGGTTGGCTTAG
* * ** * * * * * *
33455914 GCATAGGGAGTTCATTCCATGTCCAAGCCCCAGCCAGACCGAGGATAGTGGCAGCAGGA-CCAGC
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGACAGACCGAGGGTTGCGGCAGTAGGATCGA-C
* * * *
33455978 AGCACGTAGAGGGGGACCGGGTCGATCCCCGACTTGCGCATTAC-GCCTCTCCGG-CCGACTCAG
64 AGCACGCAG-GGGGGATCGGGTCGATCCCCGACTTGCGCATT-CTGCCTCTCCGGTCAG-CTGAG
* * *
33456041 GGCCCGCACACTCGTTTCGTGGGTTGACTTAG
126 CG-CCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * *
33456073 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGATCGGACCGAGGGTTGCGGTAATAGGATTGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGA-CAGACCGAGGGTTGCGGCAGTAGGATCGAC
* *
33456137 AGCACGCAGGGGGGATCGGGTCGATCCCCGGCTTACGCATTCTGCCTCTCCGGTCAGCTGAGCGC
64 AGCACGCAGGGGGGATCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCAGCTGAGCGC
* * *
33456202 CTGCGCGCTTGTTTTGTGGGTTGGCTTAG
129 C-GCACGCTCGTTTCGTGGGTTGGCTTAG
*
33456231 GCATATGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
33456258 CATACGGAGT
Statistics
Matches: 274, Mismatches: 57, Indels: 25
0.77 0.16 0.07
Matches are distributed among these distances:
156 2 0.01
157 58 0.21
158 135 0.49
159 75 0.27
160 4 0.01
ACGTcount: A:0.20, C:0.27, G:0.31, T:0.22
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACAGACCGAGGGTTGCGGCAGTAGGATCGACAG
CACGCAGGGGGGATCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCAGCTGAGCGCCG
CACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:33456267 original size:26 final size:26
Alignment explanation
Indices: 33456231--33456283 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33456221 GTTGGCTTAG
*
33456231 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
33456257 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
33456283 G
1 G
33456284 ATTGGACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:33456940 original size:159 final size:156
Alignment explanation
Indices: 33456674--33457142 Score: 489
Period size: 159 Copynumber: 2.9 Consensus size: 156
33456664 ATCGGATCGA
* * *
33456674 ACCGATGGTTGTGGTAGCAGGATCGGTAGCACGA-AGTGGGGACCGAGCCGATCCCCGACTTACG
1 ACCGAGGGTTGTGGTAGC-GGATCGGTAGCACGAGAG-GGGGACCG-GCCGATCCCTGACTTGCG
* * * *
33456738 CATTCTGCCTCTCCGATCGACTGAGCGCCCTCCACTCCAATTTCGTGGGTTGGCTTAGGCATAGG
63 CATTCTGCCTCTCCGATCGGCTGAGCGCCC-GCAC-CCTATTTCGTGGGTTGGCTTAGGCATACG
*
33456803 GAGTTCATTCCATGTCTAAGCCCCAG-CCGG
126 GAGTTCATTCCATGTCTAAGCACCAGACCGG
* * * *
33456833 ACCGAGGGTTGTGGCAGCGGTATCGGTAGCACGTAGAGGGGGACCAGGCTGATCCCTGGCTTGCA
1 ACCGAGGGTTGTGGTAGCGG-ATCGGTAGCACG-AGAGGGGGACC-GGCCGATCCCTGACTTGCG
* * * * * * *
33456898 CATTATGCCTCTCCGACCGGCTCAGTGCCCGCACACCTATTTCATGGGTTGACTTAGGCATATGG
63 CATTCTGCCTCTCCGATCGGCTGAGCGCCCGCAC-CCTATTTCGTGGGTTGGCTTAGGCATACGG
***
33456963 AGTTCATTCCCA-GTCTAAG-ATTGGACCGG
127 AGTTCATT-CCATGTCTAAGCACCAGACCGG
* ** * *
33456992 ACCGAGGGTTGTGGTAGTAGGATCGACAGCACAGAGGGGGGGACCGGGCCAAT-CCTCGACTTGC
1 ACCGAGGGTTGTGGTAG-CGGATCGGTAGCAC-GAGAGGGGGACC-GGCCGATCCCT-GACTTGC
* * * *
33457056 GCATTCTGCTTCTCCGATCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACA
62 GCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACCCT-ATTTCGTGGGTTGGCTTAGGCATACG
33457121 GAGTTCATTCCATGTCTAAGCA
126 GAGTTCATTCCATGTCTAAGCA
33457143 TACGGAGTTC
Statistics
Matches: 255, Mismatches: 43, Indels: 23
0.79 0.13 0.07
Matches are distributed among these distances:
158 11 0.04
159 188 0.74
160 53 0.21
161 3 0.01
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (156 bp):
ACCGAGGGTTGTGGTAGCGGATCGGTAGCACGAGAGGGGGACCGGCCGATCCCTGACTTGCGCAT
TCTGCCTCTCCGATCGGCTGAGCGCCCGCACCCTATTTCGTGGGTTGGCTTAGGCATACGGAGTT
CATTCCATGTCTAAGCACCAGACCGG
Found at i:33457150 original size:26 final size:26
Alignment explanation
Indices: 33457114--33457166 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33457104 GTTGGCTTAG
33457114 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
33457140 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
33457166 G
1 G
33457167 ATTTGGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:33457939 original size:157 final size:159
Alignment explanation
Indices: 33457691--33458192 Score: 495
Period size: 158 Copynumber: 3.2 Consensus size: 159
33457681 CCCCAGTCAA
* * * * * *
33457691 GCATACAGAGCTCATTCTCA-GTCTAAG-ATCAGAGCGTACCGAGGGTTACGATAGCAAGATCGA
1 GCATACGGAGTTCATTC-CATGTCTAAGCACCAGATCGAACCGAGGGTTACGACAGCAAGATCGA
* * ** * *
33457754 CAACACGC-AGGGGGGACCGGGCATATCCTCGGCTTGCGCATTTTGCCTCTCCGGTCGACTGAGT
65 CAGCACGCAAAGGGGGACCGACCA-ATCCTCGGCTTGCGCATTTTGCCTCTCTGGTCGACTGAGC
33457818 GCCCGCACGC-CATTTCGTGGGTTGGCTTAG
129 GCCCGCACGCTCATTTCGTGGGTTGGCTTAG
* * * ** *
33457848 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCGGACCGAGGGTTGTGACAGCAAGACCGAC
1 GCATACGGAGTTCATTCCATGTCTAAGCACCAGATCGAACCGAGGGTTACGACAGCAAGATCGAC
* * * * ** *
33457912 AGCACGCAAAGGGGGACCGACCGATCCTCGACTTGCGCATTTTGCCTCT-TTGACTGGTTCAGCG
66 AGCACGCAAAGGGGGACCGACCAATCCTCGGCTTGCGCATTTTGCCTCTCTGGTC-GACTGAGCG
* * * *
33457976 CCCACACGCTCATTTCATGGGGTGACTTAG
130 CCCGCACGCTCATTTCGTGGGTTGGCTTAG
* * * * *
33458006 GCATACGGAGTTCATTCCCAT-TCTAAG-ATCAGATCGAACTGAGGGTTACGGCAGCAGGATCAA
1 GCATACGGAGTTCATT-CCATGTCTAAGCACCAGATCGAACCGAGGGTTACGACAGCAAGATCGA
* * * *
33458069 CAGCACACAGAA--GGGACCGAGCCAATCCTCGG-TATACGCATTCTACCTCTCTGGTCGACTGA
65 CAGCACGCA-AAGGGGGACCGA-CCAATCCTCGGCT-TGCGCATTTTGCCTCTCTGGTCGACTGA
* *
33458131 ACGCCTGCACGCTCATTTCGTGGGTTGGCTTAG
127 GCGCCCGCACGCTCATTTCGTGGGTTGGCTTAG
*
33458164 GCATATGGAGTTCATTCCATGTCTAAGCA
1 GCATACGGAGTTCATTCCATGTCTAAGCA
33458193 TACAGAGTTC
Statistics
Matches: 275, Mismatches: 57, Indels: 24
0.77 0.16 0.07
Matches are distributed among these distances:
156 4 0.01
157 106 0.39
158 155 0.56
159 10 0.04
ACGTcount: A:0.23, C:0.27, G:0.27, T:0.23
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCATGTCTAAGCACCAGATCGAACCGAGGGTTACGACAGCAAGATCGAC
AGCACGCAAAGGGGGACCGACCAATCCTCGGCTTGCGCATTTTGCCTCTCTGGTCGACTGAGCGC
CCGCACGCTCATTTCGTGGGTTGGCTTAG
Found at i:33458051 original size:158 final size:157
Alignment explanation
Indices: 33457691--33458061 Score: 372
Period size: 157 Copynumber: 2.4 Consensus size: 157
33457681 CCCCAGTCAA
* * * * * * * *
33457691 GCATACAGAGCTCATTCTCAGTCTAAGATCAGAGCGTACCGAGGGTTACGATAGCAAGATCGACA
1 GCATACGGAGTTCATTCCCATTCTAAGATCAGATCGAACCGAGGGTTACGACAGCAAGACCGACA
* * * * * * *
33457756 ACACGCAGGGGGGACCGGGCATATCCTCGGCTTGCGCATTTTGCCTCTCCGGTCGACTGAGTGCC
66 ACACGCAAGGGGGACCGGACAGATCCTCGACTTGCGCATTTTGCCTCTCCGCTCGACTCAGCGCC
* * * *
33457821 CGCACGCCATTTCGTGGGTTGGCTTAG
131 CACACGCCATTTCATGGGGTGACTTAG
* ** * **
33457848 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-TCGGACCGAGGGTTGTGACAGCAAGACCGA
1 GCATACGGAGTTCATTCCCAT-TCTAAG-ATCAGATCGAACCGAGGGTTACGACAGCAAGACCGA
* * ** **
33457911 CAGCACGCAAAGGGGGACC-GACCGATCCTCGACTTGCGCATTTTGCCTCTTTGACT-GGTTCAG
64 CAACACGC-AAGGGGGACCGGACAGATCCTCGACTTGCGCATTTTGCCTCTCCG-CTCGACTCAG
33457974 CGCCCACACGCTCATTTCATGGGGTGACTTAG
127 CGCCCACACGC-CATTTCATGGGGTGACTTAG
* *
33458006 GCATACGGAGTTCATTCCCATTCTAAGATCAGATCGAACTGAGGGTTACGGCAGCA
1 GCATACGGAGTTCATTCCCATTCTAAGATCAGATCGAACCGAGGGTTACGACAGCA
33458062 GGATCAACAG
Statistics
Matches: 169, Mismatches: 38, Indels: 13
0.77 0.17 0.06
Matches are distributed among these distances:
156 2 0.01
157 94 0.56
158 69 0.41
159 4 0.02
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.22
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCATTCTAAGATCAGATCGAACCGAGGGTTACGACAGCAAGACCGACA
ACACGCAAGGGGGACCGGACAGATCCTCGACTTGCGCATTTTGCCTCTCCGCTCGACTCAGCGCC
CACACGCCATTTCATGGGGTGACTTAG
Found at i:33458340 original size:183 final size:184
Alignment explanation
Indices: 33458006--33458374 Score: 494
Period size: 183 Copynumber: 2.0 Consensus size: 184
33457996 GGTGACTTAG
* ** * *
33458006 GCATACGGAGTTCATTCCCATTCTAAGATCAGATCGAACTGAGGGTTACGGCAGCAGGATCAACA
1 GCATACAGAGTTCATTCCCAGCCTAAGATCAGACCGAACTGAGGGTTACGACAGCAGGATCAACA
*
33458071 GCACACAGAAGGGACCGAGCCAATCCTCGGTATACGCATTCTACCTCTCTGGTCGACTGAACGCC
66 GCACACAGAAGGGACCGAGCCAATCCTCGGTATACGCATTCTACCTCTCTGGCCGACTGAACGCC
* * *
33458136 TGCACGCTCATTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAA
131 CGCACGCTCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
* * * *
33458190 GCATACAGAGTTCATTCCCAGCCTTAGATCAGACCGGA-TCGAGGGTTGCGACAGCAGGATCGAC
1 GCATACAGAGTTCATTCCCAGCCTAAGATCAGACCGAACT-GAGGGTTACGACAGCAGGATCAAC
* ** *
33458254 AG-ACGCAGGTGGGACCGAGCCAATCCTCGGCT-TACGCATTCTACCTCTCTGGCCGACTGAGCG
65 AGCACACAGAAGGGACCGAGCCAATCCTCGG-TATACGCATTCTACCTCTCTGGCCGACTGAACG
* * * *
33458317 CCCGTATGC-CTGTTTCATGGGTTGGTTTAGGCATAGGGAGTTCATTCCATGTCTAA
129 CCCGCACGCTC-ATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
33458373 GC
1 GC
33458375 CCCAGTCGGA
Statistics
Matches: 161, Mismatches: 21, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
182 1 0.01
183 104 0.65
184 56 0.35
ACGTcount: A:0.23, C:0.27, G:0.26, T:0.24
Consensus pattern (184 bp):
GCATACAGAGTTCATTCCCAGCCTAAGATCAGACCGAACTGAGGGTTACGACAGCAGGATCAACA
GCACACAGAAGGGACCGAGCCAATCCTCGGTATACGCATTCTACCTCTCTGGCCGACTGAACGCC
CGCACGCTCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
Found at i:33458695 original size:26 final size:26
Alignment explanation
Indices: 33458665--33458717 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
33458655 GTTGCCTTAG
33458665 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
33458691 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
33458717 G
1 G
33458718 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:33459539 original size:158 final size:156
Alignment explanation
Indices: 33459112--33459573 Score: 457
Period size: 158 Copynumber: 2.9 Consensus size: 156
33459102 GACCAAACCA
* * ** *
33459112 AGGGTTGCGACAGCAGGATCGACAGCACGCAGGAGGGACCTGGCCAATCCTCGGCTTGCACATTC
1 AGGGTTGCGACAGCAGGATCGACAGCACGTAGGGGGGA-CTGGCTGATCCTCGGCTTGCGCATTC
* * * * * * *
33459177 TGCCTCTCTGGTCGACTGAGCGCCCGTACGCCCA-TTTCGTGGGTTGGCTTAGGCATAGGGAGTT
65 TACCTCTCCGGCCGGCTGAGCGCCCGCACG-CTAGTTTCGTGGGTTGGCTTA-GCATACGGAGTT
33459241 CATTCCATGTCTAAGCCCCAGTCGGACCG
128 CATTCCATGTCTAAGCCCCAGTCGGACCG
* * * * * *
33459270 AGGGTTGTGGCAG-TGAGA-CCAGTAGCACGTAGTGGGGGACTAGGTTGATCCTCGGCTTGCGCA
1 AGGGTTGCGACAGCAG-GATCGA-CAGCACGTAG-GGGGGACT-GGCTGATCCTCGGCTTGCGCA
* * * * * * * * *
33459333 TT-AAGCCTCTTCGACCGGCTCAGCGGCCGCACGCTCGTTTCGTTGGTTGACTTATGCATATGGA
62 TTCTA-CCTCTCCGGCCGGCTGAGCGCCCGCACGCTAGTTTCGTGGGTTGGCTTA-GCATACGGA
* ****
33459397 GTTCATTCCAAGTCTAAG-ATTGGATCGGACCG
125 GTTCATTCCATGTCTAAGCCCCAG-TCGGACCG
* * * *
33459429 AGGGTTGCGACAGCAGGATTGACAGCACATAGGGGGGACTGGGCTGATCCCCAGCTTGCGCATTC
1 AGGGTTGCGACAGCAGGATCGACAGCACGTAGGGGGGACT-GGCTGATCCTCGGCTTGCGCATTC
33459494 TACCTCTCCGGCCGGCTGAGCGCCCGCACGCTAGTTTCGTGGGTTGGCTTAGCCATACGGAGTTC
65 TACCTCTCCGGCCGGCTGAGCGCCCGCACGCTAGTTTCGTGGGTTGGCTTAG-CATACGGAGTTC
33459559 ATTCCATGTCTAAGC
129 ATTCCATGTCTAAGC
33459574 ATACGGAGTT
Statistics
Matches: 239, Mismatches: 53, Indels: 23
0.76 0.17 0.07
Matches are distributed among these distances:
157 4 0.02
158 119 0.50
159 114 0.48
160 2 0.01
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.24
Consensus pattern (156 bp):
AGGGTTGCGACAGCAGGATCGACAGCACGTAGGGGGGACTGGCTGATCCTCGGCTTGCGCATTCT
ACCTCTCCGGCCGGCTGAGCGCCCGCACGCTAGTTTCGTGGGTTGGCTTAGCATACGGAGTTCAT
TCCATGTCTAAGCCCCAGTCGGACCG
Found at i:33459596 original size:26 final size:26
Alignment explanation
Indices: 33459547--33459598 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
33459537 TTGGCTTAGC
*
33459547 CATACGGAGTTCATTCCATGTCTAAG
1 CATACGGAGTTCATTCCATATCTAAG
33459573 CATACGGAGTTCATTCCCA-ATCTAAG
1 CATACGGAGTTCATT-CCATATCTAAG
33459599 ATTTTCAGCC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCATATCTAAG
Found at i:33460626 original size:159 final size:158
Alignment explanation
Indices: 33460463--33460768 Score: 350
Period size: 158 Copynumber: 1.9 Consensus size: 158
33460453 AGCCAGACCG
* * * * * *
33460463 AGGGTTCTGACTGCGGGA-CAGATAGCACGCAGAGGGGGATCGGGCCGAT-CCCTGACTTGCGCA
1 AGGGTTCTGACAGCAGGATCA-ACAGCACGCA-AGGGGGACCGGGCCGATCCCCAG-CTTGCGAA
* ** * *
33460526 TTATGCCTCTTC-GTCCGGCTCAGTGCCCG-TACGCTCGTTTTGTTGGTTGACTTATGCATACAG
63 TTATGCCTCTCCGGT-CGGCTCAGCACCCGCT-CGCTCGTTTGGTGGGTTGACTTATGCATACAG
33460589 AGTTCATTCCCAGTCTAAGATTGGATCGGACTA
126 AGTTCATTCCCAGTCTAAGATTGGATCGGACTA
* * * *
33460622 AGGGTTGTGACAGCAGGATCAACAGGACGCAAGGGGGACCGTGCCGATCCCCAGCTTGCGAATTC
1 AGGGTTCTGACAGCAGGATCAACAGCACGCAAGGGGGACCGGGCCGATCCCCAGCTTGCGAATTA
* * * * *
33460687 TGCCTCTCCGGTCGGTTGAGCACCTGCTCGTTCGTTTGGTGGGTTGACTTATGCATACGGAGTTC
66 TGCCTCTCCGGTCGGCTCAGCACCCGCTCGCTCGTTTGGTGGGTTGACTTATGCATACAGAGTTC
*
33460752 ATTCTCAGTCTAAGATT
131 ATTCCCAGTCTAAGATT
33460769 AGACCAGACT
Statistics
Matches: 122, Mismatches: 21, Indels: 9
0.80 0.14 0.06
Matches are distributed among these distances:
158 90 0.74
159 30 0.25
160 2 0.02
ACGTcount: A:0.19, C:0.25, G:0.29, T:0.27
Consensus pattern (158 bp):
AGGGTTCTGACAGCAGGATCAACAGCACGCAAGGGGGACCGGGCCGATCCCCAGCTTGCGAATTA
TGCCTCTCCGGTCGGCTCAGCACCCGCTCGCTCGTTTGGTGGGTTGACTTATGCATACAGAGTTC
ATTCCCAGTCTAAGATTGGATCGGACTA
Found at i:33460880 original size:117 final size:117
Alignment explanation
Indices: 33460667--33460882 Score: 283
Period size: 117 Copynumber: 1.8 Consensus size: 117
33460657 GGACCGTGCC
* * * * * * **
33460667 GATCCCCAGCTTGCGAATTCTGCCTCTCCGGTCGGTTGAGCACCTGCTCGTTCGTTTGGTGGGTT
1 GATCCCCAGCTTCCGAATTCTGCCTCTCCGCTCGGCTGAGCACCCGCACGCTCGTTTCATGGGTT
* *
33460732 GACTTATGCATACGGAGTTCATTCTCAGTCTAAGATTAGACCAGACTGAGCT
66 GACTTAGGCATACGGAGGTCATTCTCAGTCTAAGATTAGACCAGACTGAGCT
* *
33460784 GATCCCCAGCTTCCGCATTCTGCCTTTCCGACT-GGCTGAGCACCCGCACGCTCGTTTCATGGGT
1 GATCCCCAGCTTCCGAATTCTGCCTCTCCG-CTCGGCTGAGCACCCGCACGCTCGTTTCATGGGT
*
33460848 TGGCTTAGGCATACGGAGGTCATTC-CATGTCTAAG
65 TGACTTAGGCATACGGAGGTCATTCTCA-GTCTAAG
33460883 CATATGGAGT
Statistics
Matches: 84, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
116 2 0.02
117 81 0.96
118 1 0.01
ACGTcount: A:0.17, C:0.28, G:0.25, T:0.29
Consensus pattern (117 bp):
GATCCCCAGCTTCCGAATTCTGCCTCTCCGCTCGGCTGAGCACCCGCACGCTCGTTTCATGGGTT
GACTTAGGCATACGGAGGTCATTCTCAGTCTAAGATTAGACCAGACTGAGCT
Found at i:33460885 original size:26 final size:26
Alignment explanation
Indices: 33460856--33460908 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
33460846 GTTGGCTTAG
33460856 GCATACGGAGGTCATT-CCATGTCTAA
1 GCATACGGAGGTCATTCCCA-GTCTAA
* *
33460882 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGGTCATTCCCAGTCTAA
33460908 G
1 G
33460909 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGGTCATTCCCAGTCTAA
Found at i:33461960 original size:171 final size:171
Alignment explanation
Indices: 33461664--33462102 Score: 546
Period size: 171 Copynumber: 2.6 Consensus size: 171
33461654 CAGGATTGGT
* * * * * *
33461664 AGCACGCAG-GAGGGACCGGGCCGATCCCCAGCTTGCTCATTCTGCCTCTCCGACCGACTGAGCG
1 AGCACGCAGAGGGGGACCGGGCTGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGACTGAGCA
* *
33461728 CCCGTACGCTCA-TTTCATGGGCTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAAC
66 CCCGTACGCT-AGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAAC
* * * *
33461792 CGAACCGGGGGTTGTGGTAGCAGGA-CTGGCAACGGGATCGAC
130 CGAACCGAGGGTTGTGGCAGCAAGATC-GACAACGGGATCGAC
**
33461834 AGCACGCAGAGGGGGACCGGGCTGATCCCCGGCTTGCGCATTATGCCTCTCC-AGCCGGTTGAGC
1 AGCACGCAGAGGGGGACCGGGCTGATCCCCGGCTTGCGCATTATGCCTCTCCGA-CCGACTGAGC
* ** *
33461898 ACCCGTACGCTAGTTTCGTGGGTTGACTTAGGCATACAGAGTTTGTTCCATGTCTAAGCCCCAGC
65 ACCCGTACGCTAGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAAC
* * *
33461963 TGGACCGAGGGTTGTGGCAGCAAGATCGACAATGGGATCGAC
130 CGAACCGAGGGTTGTGGCAGCAAGATCGACAACGGGATCGAC
* * * **
33462005 AGCATGC-GAAGGGGGATCGGGCTGATCCTCGGCTTATGCATTATGCCTCTCCGACCGACTGAGC
1 AGCACGCAG-AGGGGGACCGGGCTGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGACTGAGC
* * *
33462069 ACCCATACGCTTGTTTCCTGGGTTGACTTAGGCA
65 ACCCGTACGCTAGTTTCATGGGTTGACTTAGGCA
33462103 AATGGAGTTC
Statistics
Matches: 232, Mismatches: 31, Indels: 11
0.85 0.11 0.04
Matches are distributed among these distances:
170 12 0.05
171 218 0.94
172 2 0.01
ACGTcount: A:0.20, C:0.29, G:0.30, T:0.22
Consensus pattern (171 bp):
AGCACGCAGAGGGGGACCGGGCTGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGACTGAGCA
CCCGTACGCTAGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAACC
GAACCGAGGGTTGTGGCAGCAAGATCGACAACGGGATCGAC
Found at i:33462647 original size:26 final size:26
Alignment explanation
Indices: 33462570--33462639 Score: 131
Period size: 26 Copynumber: 2.7 Consensus size: 26
33462560 GTTGGCTTAG
33462570 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
33462596 GCATACGGAATTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
33462622 GCATACGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
33462640 CAATCTAATA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 42 1.00
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:33462927 original size:13 final size:13
Alignment explanation
Indices: 33462909--33462934 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
33462899 TTCACATTAT
33462909 GCCTCTCCGGTCG
1 GCCTCTCCGGTCG
33462922 GCCTCTCCGGTCG
1 GCCTCTCCGGTCG
33462935 ACTGAACGCC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.00, C:0.46, G:0.31, T:0.23
Consensus pattern (13 bp):
GCCTCTCCGGTCG
Found at i:33463009 original size:26 final size:26
Alignment explanation
Indices: 33462973--33463025 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
33462963 GTTGACTTAG
33462973 GCATAAGGAGTTCATCCCCAGTCTAA
1 GCATAAGGAGTTCATCCCCAGTCTAA
* *
33462999 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATCCCCAGTCTAA
33463025 G
1 G
33463026 ATCAGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATAAGGAGTTCATCCCCAGTCTAA
Found at i:33463364 original size:158 final size:158
Alignment explanation
Indices: 33463197--33463490 Score: 333
Period size: 158 Copynumber: 1.9 Consensus size: 158
33463187 CAGCCAGACT
* * ** *
33463197 GAGGATTGTGCCAACGGGA-CGACAGCATGCAGAGGGGGACC-GGATCGATCCCCGGCTTACGCA
1 GAGGATTGTGCCAACAGGATCGACAGCACGCAG-GGGGGACCAGGAT-GATCCCCAACTTACACA
* * * *
33463260 TTATGCCTCTCC-AGTCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAAA
64 TTATGCCTCTCCGA-CCGACTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACCTAGCCATACAAA
33463324 GTTCATTCCCAGTCTAGGATCAGACCGAACC
128 GTTCATTCCCAGTCTAGGATCAGACCGAACC
* * ** * * *
33463355 GAGGGTTGTGGCAGTAGGATCGATAGCACGCAGGGGGGACCAGGCTGATCCCCAACTTGCACATT
1 GAGGATTGTGCCAACAGGATCGACAGCACGCAGGGGGGACCAGGATGATCCCCAACTTACACATT
* * ** * **
33463420 ATGCCTCTCCGACCGATTGAGCGCCTTCACGCTCGTTTCGTGGGTTGGCCTAGCCATACGGAGTT
66 ATGCCTCTCCGACCGACTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACCTAGCCATACAAAGTT
33463485 CATTCC
131 CATTCC
33463491 ATGTCTAAGC
Statistics
Matches: 110, Mismatches: 23, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
158 95 0.86
159 15 0.14
ACGTcount: A:0.20, C:0.29, G:0.29, T:0.22
Consensus pattern (158 bp):
GAGGATTGTGCCAACAGGATCGACAGCACGCAGGGGGGACCAGGATGATCCCCAACTTACACATT
ATGCCTCTCCGACCGACTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACCTAGCCATACAAAGTT
CATTCCCAGTCTAGGATCAGACCGAACC
Found at i:33463510 original size:26 final size:26
Alignment explanation
Indices: 33463474--33463525 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
33463464 TTGGCCTAGC
33463474 CATACGGAGTTCATT-CCATGTCTAAG
1 CATACGGAGTTCATTCCCA-GTCTAAG
33463500 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
33463526 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAG
Found at i:33463903 original size:26 final size:26
Alignment explanation
Indices: 33463855--33463907 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
33463845 GTAGACATAG
*
33463855 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCACAGTCTAA
* * *
33463881 GCATACGGAGTTCATTCATAGTCTAA
1 GCATACGAAGTTCATCCACAGTCTAA
33463907 G
1 G
33463908 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCACAGTCTAA
Found at i:33464360 original size:157 final size:159
Alignment explanation
Indices: 33464002--33464388 Score: 446
Period size: 159 Copynumber: 2.4 Consensus size: 159
33463992 TCCGACCGGT
* * * * * * *
33464002 TGAGCGCCCGCATGCCCATTTTGTGAGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCC
1 TGAGCGCCCGCACGCTCGTTTCGTGAGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
* * * * *
33464067 CTAG-CCAGACCGAGGGTTGTGGCAGCGAGATCGGCAGCACGCAGAGGGGGATCAGGTCGATCCC
66 TTGGACCAGACCGAGGGTTGTGGCAGCAAGATCGACAGCAC-CAGAGGGGGACCAGGTCGATCCC
* *
33464131 CGGCTTGCGCATTATGCCTCTTCAGTCGAC
130 CGACTTGCGCATTATGCCTCTTCAGCCGAC
* *
33464161 TCAGCGCCCGCACGCTCGTTTCGTGCGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAA-C
1 TGAGCGCCCGCACGCTCGTTTCGTGAGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAAGC
** * * *
33464224 ATTGGACCAGATTGAGGGTTGTGGCAGCAAGATCGACAGTA-CATAGGGGGCACCGGGTCGATCC
65 ATTGGACCAGACCGAGGGTTGTGGCAGCAAGATCGACAGCACCAGAGGGGG-ACCAGGTCGATCC
*
33464288 CCGACTTGCGCATT-TGCCTCTAT-GGCCTG-C
129 CCGACTTGCGCATTATGCCTCT-TCAGCC-GAC
* * *
33464318 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGCCTTGGGCATACGGAGTTCATTCCATGTCTAAGCA
1 TGAGCGCCCGCACGCTCGTTTCGTGAGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
33464383 TATGGA
66 T-TGGA
33464389 GTTCATTCCT
Statistics
Matches: 194, Mismatches: 26, Indels: 16
0.82 0.11 0.07
Matches are distributed among these distances:
156 3 0.02
157 72 0.37
158 32 0.16
159 84 0.43
160 3 0.02
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (159 bp):
TGAGCGCCCGCACGCTCGTTTCGTGAGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
TTGGACCAGACCGAGGGTTGTGGCAGCAAGATCGACAGCACCAGAGGGGGACCAGGTCGATCCCC
GACTTGCGCATTATGCCTCTTCAGCCGAC
Found at i:33464390 original size:26 final size:26
Alignment explanation
Indices: 33464354--33464406 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33464344 GTTGCCTTGG
33464354 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
*
33464380 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
33464406 G
1 G
33464407 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:33465107 original size:26 final size:26
Alignment explanation
Indices: 33465077--33465129 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
33465067 GTTGACTTAG
33465077 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
33465103 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
33465129 G
1 G
33465130 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:33465404 original size:159 final size:159
Alignment explanation
Indices: 33465105--33465608 Score: 399
Period size: 159 Copynumber: 3.2 Consensus size: 159
33465095 CAGTCTAAGC
* * * * * * * *
33465105 ATAT-GGAGTTCATTCC-TAGTCTAAG-ATCGGATCGGACCGAGTGTTACGGTAGCAGGATCGAC
1 ATATAGGAGTTCATTCCAT-GTCTAAGCATCAGACCAGATCGAGGGTTGCGGCAGCAGGATCAAC
* * * * * ** * *
33465167 AGCAC-ACAAGG-GGGATCGGGCCAATCCCCGACTTGTA-CATTCTGCCTTTCCGATTGGCTGAG
65 AGCACGA-AGGGAGGGACCGGGCCAATCCCCGGCTTG-AGCATTATGCCTCTCCGGCTGACTCAG
** * *
33465229 CACCCGTACGCCCATTTCATGGATTGGCTTAG
128 TGCCCGTACGCTCATTTCATGGGTTGGCTTAG
* * * *
33465261 TTATAGGGAGTTCATTCCATGTCTAAGCCA-CAG-CCGGATCGAGGGTTGTGGCAGCGGGA-CAG
1 ATATA-GGAGTTCATTCCATGTCTAAG-CATCAGACCAGATCGAGGGTTGCGGCAGCAGGATCA-
* * * * *
33465323 GCAGCACGCAGAGG-GGGACCGGGCCGATCCCCGGCTTGCAG-ATTATGCTTCTCCGG-TCGGCT
63 ACAGCACGAAG-GGAGGGACCGGGCCAATCCCCGGCTTG-AGCATTATGCCTCTCCGGCT-GACT
* *
33465385 CAGTGCCCGTACACTCATTTCATGGGTTGACTTAG
125 CAGTGCCCGTACGCTCATTTCATGGGTTGGCTTAG
** *
33465420 GCATACGGAGTTCATT-CATAGTCTAAG-ATCAGATCAGATCGAGGGTTGCGGCAGCAGGATCAA
1 ATATA-GGAGTTCATTCCAT-GTCTAAGCATCAGACCAGATCGAGGGTTGCGGCAGCAGGATCAA
* * * * *
33465483 CAGCACGAAGGGAGGGACTGGGCCAATCCCCGGCTTGTGCATTCTGCCTCTTCGGCTGACTGAGT
64 CAGCACGAAGGGAGGGACCGGGCCAATCCCCGGCTTGAGCATTATGCCTCTCCGGCTGACTCAGT
* * *
33465548 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAAG
129 GCCCGTACGCTCATTTCATGGGTTGGCTT-AG
33465580 CATATA-GAGTTCATTCCATGTCTAAGCAT
1 -ATATAGGAGTTCATTCCATGTCTAAGCAT
33465609 ACGGAGCTCA
Statistics
Matches: 275, Mismatches: 52, Indels: 38
0.75 0.14 0.10
Matches are distributed among these distances:
156 3 0.01
157 2 0.01
158 55 0.20
159 201 0.73
160 11 0.04
161 3 0.01
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.24
Consensus pattern (159 bp):
ATATAGGAGTTCATTCCATGTCTAAGCATCAGACCAGATCGAGGGTTGCGGCAGCAGGATCAACA
GCACGAAGGGAGGGACCGGGCCAATCCCCGGCTTGAGCATTATGCCTCTCCGGCTGACTCAGTGC
CCGTACGCTCATTTCATGGGTTGGCTTAG
Found at i:33465619 original size:26 final size:26
Alignment explanation
Indices: 33465576--33465631 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
33465566 TGGGTTGGCT
* *
33465576 TAAGCATATAGAGTTCATT-CCATGTC
1 TAAGCATACAGAGCTCATTCCCA-GTC
*
33465602 TAAGCATACGGAGCTCATTCCCAGTC
1 TAAGCATACAGAGCTCATTCCCAGTC
33465628 TAAG
1 TAAG
33465632 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.29
Consensus pattern (26 bp):
TAAGCATACAGAGCTCATTCCCAGTC
Found at i:33466102 original size:27 final size:27
Alignment explanation
Indices: 33466050--33466102 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 27
33466040 TCTAAATAAA
* *
33466050 TTTTAAAAAATCCTGAACAGTAAAAAG
1 TTTTAAAAAATCCTGAAAAATAAAAAG
*
33466077 TTTT-AAAAATCGTGAAAAATAGAAAA
1 TTTTAAAAAATCCTGAAAAATA-AAAA
33466103 CAGGTCGTCT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
26 14 0.64
27 8 0.36
ACGTcount: A:0.55, C:0.08, G:0.11, T:0.26
Consensus pattern (27 bp):
TTTTAAAAAATCCTGAAAAATAAAAAG
Found at i:33466337 original size:25 final size:26
Alignment explanation
Indices: 33466301--33466352 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
33466291 GTTGACTTAG
33466301 GCATACGAAGTTCA-TCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
33466326 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
33466352 G
1 G
33466353 ATCGAACGGA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 13 0.52
26 12 0.48
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:33466849 original size:26 final size:26
Alignment explanation
Indices: 33466797--33466852 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
33466787 TGGGTTGGCT
*
33466797 TAAGCATACGGAGTTCATTCTACGTC
1 TAAGCATACGGAGTTCATTCCACGTC
* *
33466823 TAAGCTTATGGAGTTCATTCC-CAGTC
1 TAAGCATACGGAGTTCATTCCAC-GTC
33466849 TAAG
1 TAAG
33466853 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.27, C:0.21, G:0.20, T:0.32
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCACGTC
Found at i:33467135 original size:170 final size:170
Alignment explanation
Indices: 33466880--33467193 Score: 400
Period size: 170 Copynumber: 1.8 Consensus size: 170
33466870 GTTGCGACAG
* * * * *
33466880 CAGGACCAGCAACAGGATCGACAGCATGTAGGGGGGACCGAGCCGATCCCCGGCTTGCGCCTTCT
1 CAGGACCAGCAACAGGATCGACAGCACGTAGGGGGGACCGAGCCGATCCCCGACTTACGCATTAT
* * * * * * *
33466945 GCCTCTCCGGTTGGCTGAGCGCCCGCACGCTCCTTTCGTGGGTTGGCTTTGGCATACAGAGTTCA
66 GCCTCTCCGGTCGACTGAGCGCACGCACACTCCTTTCATGGGTTGACTTAGGCATACAGAGTTCA
*
33467010 T-TCCATGTCTAAGCCCCAGCCGGATCGAGGGTTGTGGTAC
131 TCCCCA-GTCTAAGCCCCAGCCGGATCGAGGGTTGTGGTAC
* * **
33467050 CAGGACCGGCAAC-GAGATCGACAGCACGTAGAGGGGGACCGGGTTGATCCCCGACTTACGCATT
1 CAGGACCAGCAACAG-GATCGACAGCACGTAG-GGGGGACCGAGCCGATCCCCGACTTACGCATT
* * *
33467114 ATGCCTCTCCGG-CGACTGAGCGTACGCACACTCGTTTCATGGGTTGACTTAGGCATATAGAGTT
64 ATGCCTCTCCGGTCGACTGAGCGCACGCACACTCCTTTCATGGGTTGACTTAGGCATACAGAGTT
33467178 CATCCCCAGTCTAAGC
129 CATCCCCAGTCTAAGC
33467194 ATACGGAGTT
Statistics
Matches: 121, Mismatches: 20, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
169 1 0.01
170 80 0.66
171 40 0.33
ACGTcount: A:0.19, C:0.30, G:0.30, T:0.21
Consensus pattern (170 bp):
CAGGACCAGCAACAGGATCGACAGCACGTAGGGGGGACCGAGCCGATCCCCGACTTACGCATTAT
GCCTCTCCGGTCGACTGAGCGCACGCACACTCCTTTCATGGGTTGACTTAGGCATACAGAGTTCA
TCCCCAGTCTAAGCCCCAGCCGGATCGAGGGTTGTGGTAC
Found at i:33467196 original size:26 final size:26
Alignment explanation
Indices: 33467166--33467218 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
33467156 GTTGACTTAG
*
33467166 GCATATAGAGTTC-ATCCCCAGTCTAA
1 GCATACAGAGTTCAAT-CCCAGTCTAA
* *
33467192 GCATACGGAGTTCAATCCTAGTCTAA
1 GCATACAGAGTTCAATCCCAGTCTAA
33467218 G
1 G
33467219 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCAATCCCAGTCTAA
Found at i:33467558 original size:158 final size:155
Alignment explanation
Indices: 33467192--33467571 Score: 433
Period size: 158 Copynumber: 2.4 Consensus size: 155
33467182 CCCAGTCTAA
* * * * *
33467192 GCATACGGAGTTCAATCCTAGTCTAAGATCAGACCGGATCGAGGGTTGCGGTAGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACA
* *
33467257 GCACGCAGGGGGAATGGGTCGATCCCTGGCTTACGCATTCTGCCTCTCTGACCGGCTGAGCGCCC
66 GCACGCAGGGGGAACGGGCCGATCCCTGGCTTACGCATTCTGCCTCTCTGACCGGCTGAGCGCCC
*
33467322 GCGCCCATTTCGTGGGTTGGCGTAG
131 GCGCCCATTTCGTGGGTTGACGTAG
* * ** * * * *
33467347 GCATAGGGAGTTCATT-CCATGTCGAAGCCCCAG-CTGGACCGAGGGTTGTGGCAGCGGGATCGG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGA
* * * ** *
33467410 CAGCACGCAGAGGGGACCGGGCCGATCCCTGGCTTGCGCATTGTGCCTCT-TCGGTCGGCTTAGC
64 CAGCACGCAG-GGGGAACGGGCCGATCCCTGGCTTACGCATTCTGCCTCTCT-GACCGGCTGAGC
* * *
33467474 GCCCGTACGCTCATTTCGTGGGTTGACTTAT
127 GCCCG--CGCCCATTTCGTGGGTTGACGTAG
** *
33467505 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTGCGGCAGCAAGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACA
33467570 GC
66 GC
33467572 TTGCGCATTC
Statistics
Matches: 181, Mismatches: 36, Indels: 13
0.79 0.16 0.06
Matches are distributed among these distances:
154 2 0.01
155 54 0.30
156 51 0.28
157 3 0.02
158 68 0.38
159 3 0.02
ACGTcount: A:0.19, C:0.27, G:0.32, T:0.21
Consensus pattern (155 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACA
GCACGCAGGGGGAACGGGCCGATCCCTGGCTTACGCATTCTGCCTCTCTGACCGGCTGAGCGCCC
GCGCCCATTTCGTGGGTTGACGTAG
Found at i:33467667 original size:26 final size:25
Alignment explanation
Indices: 33467631--33467682 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
33467621 GTTGGCTTAG
*
33467631 GCATACGGAGTTGATTCCATGTCTAA
1 GCATACGGAGTTCATTCCA-GTCTAA
33467657 GCATACGGAGTTCATTCCAGTCTAA
1 GCATACGGAGTTCATTCCAGTCTAA
33467682 G
1 G
33467683 ATTTTAAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCAGTCTAA
Found at i:33468382 original size:26 final size:26
Alignment explanation
Indices: 33468352--33468404 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
33468342 GTTGACTTAG
33468352 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
33468378 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
33468404 G
1 G
33468405 ATCGGTAGGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:33469116 original size:171 final size:171
Alignment explanation
Indices: 33468744--33469139 Score: 368
Period size: 171 Copynumber: 2.3 Consensus size: 171
33468734 AGGGTTACGA
* * * * * * ** *
33468744 CAGCAGGATCTATAGCACAT-AGGGGGGACCAAGCTGATCTCTGACTTATGCATTCTACCTCTCC
1 CAGCAGGATCGACAGCACATAAGGAGGGACCGAGCTGATCCCCGACTTGCGCATTCTGCCTCTCC
*** * * **
33468808 GGCCGGCTGAGCTCCTGCACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCCAGT
66 AATCGGTTGAGCACCCACACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCCAGT
* * *
33468873 CTAAGATCGGATCAGACCGAGGGTTACGGTAGCAAGACCAG
131 CTAAGACCAGATCAGACCGAGGGTTACGGCAGCAAGACCAG
* * *
33468914 CAGCAGGATCGACAGCACGTAAGGAGGGACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCC
1 CAGCAGGATCGACAGCACATAAGGAGGGACCGAGCTGATCCCCGACTTGCGCATTCTGCCTCTCC
** *
33468979 AATCGGTTGAGCACCCACACGCTCATTTCGTGGGTTGGCTTAGGCATATGGAGTTTATT-CCATG
66 AATCGGTTGAGCACCCACACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCCA-G
* * * ** * ***
33469043 TCTAAGCCCCAGA-CGGACTGAGGGTTGTGGCAGCAGGATTGG
130 TCTAAG-ACCAGATCAGACCGAGGGTTACGGCAGCAAGACCAG
** * * * * *
33469085 CAGTGGGATCGGCAGCATATAGAGG-GGGACCGAGTTGATCGCCGACTTGTGCATT
1 CAGCAGGATCGACAGCACATA-AGGAGGGACCGAGCTGATCCCCGACTTGCGCATT
33469140 ACTCCTTTTC
Statistics
Matches: 178, Mismatches: 44, Indels: 7
0.78 0.19 0.03
Matches are distributed among these distances:
170 20 0.11
171 152 0.85
172 6 0.03
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.23
Consensus pattern (171 bp):
CAGCAGGATCGACAGCACATAAGGAGGGACCGAGCTGATCCCCGACTTGCGCATTCTGCCTCTCC
AATCGGTTGAGCACCCACACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCCAGT
CTAAGACCAGATCAGACCGAGGGTTACGGCAGCAAGACCAG
Found at i:33469242 original size:26 final size:26
Alignment explanation
Indices: 33469206--33469258 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
33469196 GTTGACTTAG
*
33469206 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
33469232 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
33469258 G
1 G
33469259 ATCGAACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:33470953 original size:158 final size:158
Alignment explanation
Indices: 33470487--33471272 Score: 629
Period size: 158 Copynumber: 5.0 Consensus size: 158
33470477 AAGATCGAAC
* * * * * * * *
33470487 CGGACCGAGGGTTGCGGCCGCAGGATCGACAGCATGCAG-GGGGATCAGACCGGTCCCCTGCTTG
1 CGGACCGAGGGTTGCGGCAGCAGGACCGACAGCACGCAGAGGGGACCGGACCGATCCCCGGCTTA
* * * * * * * * *
33470551 CACATTCTGCCTCTCCGGCAGGCTGAGCACCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAG
66 CGCATTATGCCTCTTCGACTGGCTAAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAG
* * *
33470616 GGAGTTCATTTCGTGTCTAAGCCCTAGT
131 GGAGTTCATTCCATGTCTAAGCACTAGT
* * *
33470644 CGGACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAAGGGGATCGGACCGATCCCCGGCTT
1 CGGACCGAGGGTTGCGGCAGCAGGACCGACAGCACGCAG-AGGGGACCGGACCGATCCCCGGCTT
* * * * *
33470709 GCGCATTATGCCTCTTCGACTGGCTCAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTATGCATA
65 ACGCATTATGCCTCTTCGACTGGCTAAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATA
* * * *
33470774 CGAAGTTCATTCCCA-GCCTAAG-ATTAGAT
130 GGGAGTTCATT-CCATGTCTAAGCACTAG-T
** * * * *
33470803 CGGATTGAGGGTTGCGGCAGCATGATCGATAGTACGCATG-GGGGACCAGG-CCGATCCCCGGCT
1 CGGACCGAGGGTTGCGGCAGCAGGACCGACAGCACGCA-GAGGGGACC-GGACCGATCCCCGGCT
* * * * *
33470866 TACGCATTCTGCCTCTTCGA-TCGGCTAAGCGCTCGTACGTTCGTTTCATGGGTTGGCTTAGGCA
64 TACGCATTATGCCTCTTCGACT-GGCTAAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCA
* *
33470930 TAGGGAGTTCATTCCATGTCTAAGCCCTAGC
128 TAGGGAGTTCATTCCATGTCTAAGCACTAGT
* * ** * ** * ** * ** * *
33470961 CAGACCGAGGGTTGTGGCAGTGGGATCGGTAGCTCATAGAAGGGGAACGG-GTGATCCTCGACTT
1 CGGACCGAGGGTTGCGGCAGCAGGACCGACAGCACGCAG-AGGGGACCGGACCGATCCCCGGCTT
* * * * * * * * *
33471025 GCGCATTCTGCCTCTCTGGTC-GACTGAGCGCCCGCCCGCCCGTTTCGTGGTTTGGCTTAGGCAT
65 ACGCATTATGCCTCT-TCGACTGGCTAAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCAT
*
33471089 AGGGAGTTCATTCCATGTCTAAGCCCTAGT
129 AGGGAGTTCATTCCATGTCTAAGCACTAGT
* * * * * * * *
33471119 CAGACTGAGGGTTGTGGCAGC-GAGACCGGCAGCATGCAAAGGGGGATCGGGCCGATCCCCGGCT
1 CGGACCGAGGGTTGCGGCAGCAG-GACCGACAGCACGCAGA-GGGGACCGGACCGATCCCCGGCT
* * * * * *
33471183 TGCGCATTATGCCTCTTCGGCTGGCTCAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTATGCAT
64 TACGCATTATGCCTCTTCGACTGGCTAAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCAT
* *
33471248 ACGGAGTTCATCCCCA-GTCTAAGCA
129 AGGGAGTTCAT-TCCATGTCTAAGCA
33471273 TACGGAGTTC
Statistics
Matches: 501, Mismatches: 110, Indels: 34
0.78 0.17 0.05
Matches are distributed among these distances:
157 41 0.08
158 245 0.49
159 210 0.42
160 5 0.01
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.23
Consensus pattern (158 bp):
CGGACCGAGGGTTGCGGCAGCAGGACCGACAGCACGCAGAGGGGACCGGACCGATCCCCGGCTTA
CGCATTATGCCTCTTCGACTGGCTAAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAG
GGAGTTCATTCCATGTCTAAGCACTAGT
Found at i:33471174 original size:317 final size:317
Alignment explanation
Indices: 33470453--33471271 Score: 785
Period size: 317 Copynumber: 2.6 Consensus size: 317
33470443 CCCAGTCGAA
* * * * * * * *
33470453 GCATAC-AGAGTTCATTCCCAGTCTAAGA-TCGAACCGGACCGAGGGTTGCGGCCGCAGGATCGA
1 GCATACGA-AGTTCATTCCCAGCCTAAGACTAG-ATCAGACTGAGGGTTGCGGCAGCATGACCGA
* * * * * * * * * * * *
33470516 CAGCATGC-AGGGGGATCAGACCGGTCCCCTGCTTGCACATTCTGCCTCTCCGGCAGGCTGAGCA
64 CAGCACGCAAGGGGGACCAGGCCGATCCCCGGCTTACGCATTATGCCTCTTCGGCTGGCTAAGCG
* * * * *
33470580 CCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTTCGTGTCTAAGCCCTAGTC
129 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCC
* * * *
33470645 GGACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAAGGGGATCGGACCGATCCCCGGCTTG
194 AGACCGAGGGTTGTGGCAGCGGGACCGACAGCACACAGAAGGGGAACGGACCGATCCCCGACTTG
* * * *
33470710 CGCATTATGCCTCTTCGACTGGCTCAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAT
259 CGCATTATGCCTCTTCGACTGACTCAGCGCCCGCACGCCCGTTTCGTGGGTTGACTTAG
* * * * *
33470769 GCATACGAAGTTCATTCCCAGCCTAAGATTAGATCGGATTGAGGGTTGCGGCAGCATGATCGATA
1 GCATACGAAGTTCATTCCCAGCCTAAGACTAGATCAGACTGAGGGTTGCGGCAGCATGACCGACA
* * * *
33470834 GTACGCATGGGGGACCAGGCCGATCCCCGGCTTACGCATTCTGCCTCTTC-GATCGGCTAAGCGC
66 GCACGCAAGGGGGACCAGGCCGATCCCCGGCTTACGCATTATGCCTCTTCGGCT-GGCTAAGCGC
* * * *
33470898 TCGTACGTTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCA
130 CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCA
* * ** * * ** *
33470963 GACCGAGGGTTGTGGCAGTGGGATCGGTAGCTCATAGAAGGGGAACGG-GTGATCCTCGACTTGC
195 GACCGAGGGTTGTGGCAGCGGGACCGACAGCACACAGAAGGGGAACGGACCGATCCCCGACTTGC
* * * * * * *
33471027 GCATTCTGCCTCTCTGGTC-GACTGAGCGCCCGCCCGCCCGTTTCGTGGTTTGGCTTAG
260 GCATTATGCCTCT-TCGACTGACTCAGCGCCCGCACGCCCGTTTCGTGGGTTGACTTAG
* * * * *
33471085 GCATAGGGAGTTCATT-CCATGTCTAAGCCCTAG-TCAGACTGAGGGTTGTGGCAGCGA-GACCG
1 GCATACGAAGTTCATTCCCA-GCCTAAG-ACTAGATCAGACTGAGGGTTGCGGCAGC-ATGACCG
* * * * * *
33471147 GCAGCATGCAAAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGGCTGGCTCAG
63 ACAGCACGC-AAGGGGGACCAGGCCGATCCCCGGCTTACGCATTATGCCTCTTCGGCTGGCTAAG
* * * * *
33471212 TGCCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATCCCCA-GTCTAAGC
127 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCAT-TCCATGTCTAAGC
33471272 ATACGGAGTT
Statistics
Matches: 408, Mismatches: 84, Indels: 21
0.80 0.16 0.04
Matches are distributed among these distances:
315 3 0.01
316 160 0.39
317 240 0.59
318 5 0.01
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.23
Consensus pattern (317 bp):
GCATACGAAGTTCATTCCCAGCCTAAGACTAGATCAGACTGAGGGTTGCGGCAGCATGACCGACA
GCACGCAAGGGGGACCAGGCCGATCCCCGGCTTACGCATTATGCCTCTTCGGCTGGCTAAGCGCC
CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCAG
ACCGAGGGTTGTGGCAGCGGGACCGACAGCACACAGAAGGGGAACGGACCGATCCCCGACTTGCG
CATTATGCCTCTTCGACTGACTCAGCGCCCGCACGCCCGTTTCGTGGGTTGACTTAG
Found at i:33471280 original size:26 final size:26
Alignment explanation
Indices: 33471244--33471296 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
33471234 GTTGACTTAT
33471244 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
33471270 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
33471296 G
1 G
33471297 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:33472181 original size:26 final size:26
Alignment explanation
Indices: 33472151--33472203 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
33472141 GTTGACTTAG
33472151 GCATACAG-AGTTCA-TCCCTAGTCTAA
1 GCATA-AGAAGTTCATTCCC-AGTCTAA
*
33472177 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATAAGAAGTTCATTCCCAGTCTAA
33472203 G
1 G
33472204 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 1 0.04
26 19 0.79
27 4 0.17
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATAAGAAGTTCATTCCCAGTCTAA
Found at i:33472527 original size:26 final size:26
Alignment explanation
Indices: 33472491--33472546 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
33472481 TGGGTTGACT
33472491 TAAGCATACAGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTCATTCCCAGTC
*
33472517 TAAGCATACAGAGTTCCTTCCCAGTC
1 TAAGCATACAGAGTTCATTCCCAGTC
33472543 TAAG
1 TAAG
33472547 ATCAGACCGG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.27
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATTCCCAGTC
Found at i:33472722 original size:343 final size:343
Alignment explanation
Indices: 33472121--33472863 Score: 967
Period size: 343 Copynumber: 2.2 Consensus size: 343
33472111 TGGCTGAGCG
* * * *
33472121 CCCGTACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCA-TCCCTAGTCTAAGCATATGA
1 CCCGCACGCTCATTTCGTGGGTTGACTTAAGCATACAGAGTTCATTCCC-AGTCTAAGCATAAGA
*
33472185 AGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGTAGGATCGACAGCATGCAG
65 AGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGTAGGATCGACAGCACGCAG
* * * * * *
33472250 GGGGGACCGGACTGATCCCCGGCTTGCTCATTTTGCCTCTCCGGTCGGCTGAGGGCCCGCACGCC
130 GGGGGACCGGACTGATCCCCGGCTTACGCATTCTACCTCTCCGGTCGACTGAGCGCCCGCACGCC
* *
33472315 CGTTTCATGGGTTGGCTTAGGCATAGGGAGATCATTCCATGTCTAAGCCTCAATCGGACCGAGGG
195 CGTTTCATGGGTTGGCTTAGGCATAGGGAGATCATTCCATGTCTAAGCCCCAACCGGACCGAGGG
* * ** * *
33472380 TTGTGGCAACAGGAC-CAGCGGCACACAGAGGGGGACCGGGCTGATCCCTGACTTGCGCATTATG
260 TTGTGGCAACAGGACTCA-CAGCACACAAAGGGGGACCGAACCGATCCCTGACTTGCGCATTATA
* *
33472444 CCTCTCCAGCCGGCTCAACG
324 CCTCTCCAGCCAGCTCAACA
* *
33472464 CTCGCACGCTCATTTTGTGGGTTGACTTAAGCATACAGAGTTCATTCCCAGTCTAAGCATACAG-
1 CCCGCACGCTCATTTCGTGGGTTGACTTAAGCATACAGAGTTCATTCCCAGTCTAAGCATA-AGA
* *
33472528 AGTTCCTTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGC-AGCAGTAGGATCGACAGCACGCA
65 AGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGA-CAGTAGGATCGACAGCACGCA
** * *
33472592 GGGGGGACCGGGTTGATCCCCGGCTTACGCATTCTACCTCTCCGG-CTGACTGAGCGCCTGCTCG
129 GGGGGGACCGGACTGATCCCCGGCTTACGCATTCTACCTCTCCGGTC-GACTGAGCGCCCGCACG
* * * *
33472656 CCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTGAGCCCCAGCC-GAGCCGA
193 CCCGTTTCATGGGTTGGCTTAGGCATAGGGAGATCATTCCATGTCTAAGCCCCAACCGGA-CCGA
* * * * * *
33472720 GGGTTGTGGCAGCGGGACTCACAGCACGCAAAGGGGGACCGAACCGATCCCTGGCTTGTGCGTTA
257 GGGTTGTGGCAACAGGACTCACAGCACACAAAGGGGGACCGAACCGATCCCTGACTTGCGCATTA
*** * *
33472785 TACCTCTTTGGTCAGCTTAACA
322 TACCTCTCCAGCCAGCTCAACA
* * *
33472807 CCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAG
1 CCCGCACGCTCATTTCGTGGGTTGACTTAAGCATACAGAGTTCATTCCCAGTCTAAG
33472864 ATCAGATCGG
Statistics
Matches: 345, Mismatches: 49, Indels: 12
0.85 0.12 0.03
Matches are distributed among these distances:
342 4 0.01
343 334 0.97
344 7 0.02
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (343 bp):
CCCGCACGCTCATTTCGTGGGTTGACTTAAGCATACAGAGTTCATTCCCAGTCTAAGCATAAGAA
GTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGTAGGATCGACAGCACGCAGG
GGGGACCGGACTGATCCCCGGCTTACGCATTCTACCTCTCCGGTCGACTGAGCGCCCGCACGCCC
GTTTCATGGGTTGGCTTAGGCATAGGGAGATCATTCCATGTCTAAGCCCCAACCGGACCGAGGGT
TGTGGCAACAGGACTCACAGCACACAAAGGGGGACCGAACCGATCCCTGACTTGCGCATTATACC
TCTCCAGCCAGCTCAACA
Found at i:33473054 original size:172 final size:171
Alignment explanation
Indices: 33472871--33473227 Score: 403
Period size: 171 Copynumber: 2.1 Consensus size: 171
33472861 AAGATCAGAT
* * * * *
33472871 CGGACCGAGGGTTGCAGTAGTAGGACCAGTAGCAGGATC-AGCAGCATGCAG-GGGGGACCGGGT
1 CGGACCGAGGGTTGCAGCAGCAGGACCAGTAGCAGGATCGA-CAGCACGCAGAGAGGGACCGGGC
* * * * **
33472934 TGATCCTCGACGTGCACATTCTACCTCTTCGGCCGGTTGAGAGCTCGCACACTCGTTTTCAATGG
65 TGATCCTCGACGTGCACATTCTACCTCTCCGACCGGCTGAGAGCCCGCACAC-CCATTTC-ATGG
*
33472999 GTTGGCTTAGGCATAAAGAGTTCATTCCATGTCTAAGCCCCAGC
128 GTTGGCTTAGGCATAAAGAGATCATTCCATGTCTAAGCCCCAGC
* *** * * *
33473043 CGGATCGAGGGTTATGGCAGCAGGACCGGTAGCGGGATCGACAGCACGCAGAGAGGGATCGGGCT
1 CGGACCGAGGGTTGCAGCAGCAGGACCAGTAGCAGGATCGACAGCACGCAGAGAGGGACCGGGCT
* * * * * * *
33473108 GATCCTCGACTTGCTCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCCCATTTCGTGGGTT
66 GATCCTCGACGTGCACATTCTACCTCTCCGACCGGCTGAGAGCCCGCACACCCATTTCATGGGTT
** *
33473173 GGCTTAGGCATAGGGAGATCATTCCATGTCTAAGCCCCGGC
131 GGCTTAGGCATAAAGAGATCATTCCATGTCTAAGCCCCAGC
*
33473214 CGGACCGAGAGTTG
1 CGGACCGAGGGTTG
33473228 TGGCAGTGAG
Statistics
Matches: 151, Mismatches: 32, Indels: 5
0.80 0.17 0.03
Matches are distributed among these distances:
171 54 0.36
172 45 0.30
173 52 0.34
ACGTcount: A:0.20, C:0.27, G:0.32, T:0.21
Consensus pattern (171 bp):
CGGACCGAGGGTTGCAGCAGCAGGACCAGTAGCAGGATCGACAGCACGCAGAGAGGGACCGGGCT
GATCCTCGACGTGCACATTCTACCTCTCCGACCGGCTGAGAGCCCGCACACCCATTTCATGGGTT
GGCTTAGGCATAAAGAGATCATTCCATGTCTAAGCCCCAGC
Found at i:33473366 original size:26 final size:26
Alignment explanation
Indices: 33473327--33473382 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
33473317 TGTGTTGACT
33473327 TAAGCACACAGAGTTCATTCACAGTC
1 TAAGCACACAGAGTTCATTCACAGTC
* * *
33473353 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCACACAGAGTTCATTCACAGTC
33473379 TAAG
1 TAAG
33473383 ATTGGATCAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (26 bp):
TAAGCACACAGAGTTCATTCACAGTC
Found at i:33474234 original size:25 final size:26
Alignment explanation
Indices: 33474196--33474247 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
33474186 GTTGACTTAG
33474196 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
33474222 GCATAC-GAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
33474247 G
1 G
33474248 ATCAGACTAG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 18 0.75
26 6 0.25
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:33474548 original size:26 final size:26
Alignment explanation
Indices: 33474518--33474568 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
33474508 TGGCTTAGGT
*
33474518 ATACGGAGTTCATTC-CATGTCTAAGC
1 ATACGAAGTTCATTCTCA-GTCTAAGC
33474544 ATACGAAGTTCATTCTCAGTCTAAG
1 ATACGAAGTTCATTCTCAGTCTAAG
33474569 ATTTTAAGCC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (26 bp):
ATACGAAGTTCATTCTCAGTCTAAGC
Found at i:33480730 original size:26 final size:26
Alignment explanation
Indices: 33480694--33480746 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
33480684 GTTGACTTAG
33480694 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* * *
33480720 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
33480746 G
1 G
33480747 ATCTAACCAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:33481086 original size:26 final size:26
Alignment explanation
Indices: 33481050--33481102 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
33481040 GTTGACTTAG
33481050 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
33481076 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
33481102 G
1 G
33481103 ATAGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:33481335 original size:356 final size:356
Alignment explanation
Indices: 33480671--33481311 Score: 896
Period size: 356 Copynumber: 1.8 Consensus size: 356
33480661 GTGCCCGCAC
33480671 GCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATT
1 GCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATT
* ** * * * *
33480736 CCCAGTGTAAGATCTAACCAAATCGAGGGTTACGATAGCAGGATCGACAGCACGTAGGGGGGATC
66 CCCAGTCTAAGATAGAACCAAATCGAGGGTTACGACAGCAAGATCGACAGCACGCAGGGGGGACC
* * * * * *
33480801 GGGCCGATCCCTGACTTGCACATTCTGCCTCTTCGATCGGTTGAGCACTCGCAAGCTCGTTTCGT
131 GGGCCGATCCCCGACTTGCACATTATGCCTCTCCGACCGGCTCAGCACTCGCAAGCTCGTTTCGT
** * ** * *
33480866 GGGTTGGCCTAGGCATACAGAGTTCATTCCATGTCTAAGCCCTAACTGGACCGAGGGTTATGGCA
196 GGGTTAACCTAGGCATACAGAGTTCATTCCATGTCTAAGACCTAACCAGACCGAGGGTTACGACA
* *
33480931 GCAGGATCGGCAGCACGCAGAGGGGGACTGGGCTGATCCGGCTTGTGCAACAGGCCTCTTCCGAC
261 GCAGGATCGACAGCACACAGAGGGGGACTGGGCTGATCCGGCTTGTGCAACAGGCCTCTTCCGAC
33480996 CAGCCTCTTCGGTCAGGCTGAGTGCCCCTGT
326 CAGCCTCTTCGGTCAGGCTGAGTGCCCCTGT
* *
33481027 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTTATT
1 GCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATT
* * * *
33481092 CCCAGTCTAAGATAGGACCAGATCGAGGGTTGCGACAGCAAGATCGACAGCATGCAGGGGGGACC
66 CCCAGTCTAAGATAGAACCAAATCGAGGGTTACGACAGCAAGATCGACAGCACGCAGGGGGGACC
* * * *
33481157 GGGCCGATCCCCGAGTTGCGCATTATGCCTCTCCGACCGGCTCAGCAC-CTGCACGCTTGTTTCG
131 GGGCCGATCCCCGACTTGCACATTATGCCTCTCCGACCGGCTCAGCACTC-GCAAGCTCGTTTCG
* * * *
33481221 TGGGTTAACTTAGGCATACGGAGTT-ATTCCCA-GTCTAAGATC-AGACCAGACCGAGGGTTGCG
195 TGGGTTAACCTAGGCATACAGAGTTCATT-CCATGTCTAAGACCTA-ACCAGACCGAGGGTTACG
33481283 ACAGCAGGATCGACAGCACACAG-GGGGGA
258 ACAGCAGGATCGACAGCACACAGAGGGGGA
33481312 TCGGGTCGAT
Statistics
Matches: 246, Mismatches: 36, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
354 7 0.03
355 46 0.19
356 193 0.78
ACGTcount: A:0.22, C:0.26, G:0.29, T:0.22
Consensus pattern (356 bp):
GCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATT
CCCAGTCTAAGATAGAACCAAATCGAGGGTTACGACAGCAAGATCGACAGCACGCAGGGGGGACC
GGGCCGATCCCCGACTTGCACATTATGCCTCTCCGACCGGCTCAGCACTCGCAAGCTCGTTTCGT
GGGTTAACCTAGGCATACAGAGTTCATTCCATGTCTAAGACCTAACCAGACCGAGGGTTACGACA
GCAGGATCGACAGCACACAGAGGGGGACTGGGCTGATCCGGCTTGTGCAACAGGCCTCTTCCGAC
CAGCCTCTTCGGTCAGGCTGAGTGCCCCTGT
Found at i:33481376 original size:157 final size:156
Alignment explanation
Indices: 33481076--33481417 Score: 433
Period size: 157 Copynumber: 2.2 Consensus size: 156
33481066 CCCAGTCTAA
*
33481076 GCATACGGAGTTTATTCCCAGTCTAAGATAGGACCAGATCGAGGGTTGCGACAGCAAGATCGACA
1 GCATACGGAG-TTATTCCCAGTCTAAGATAGGACCAGACCGAGGGTTGCGACAGCAAGATCGACA
** *
33481141 GCATGCAGGGGGGACCGGGCCGATCCCCGAGTTGCGCATTATGCCTCTCCGACCGGCTCAGCACC
65 GCACACAGGGGGGACCGGGCCGATCCCCGAGTTGCGCATTATGCCTCTCCGACCGACTCAGCACC
**
33481206 TGCACGCTTGTTTCGTGGGTTAACTTAG
130 T-CACGCCCGTTTCGTGGGTTAACTTAG
*
33481234 GCATACGGAGTTATTCCCAGTCTAAGATCA-GACCAGACCGAGGGTTGCGACAGCAGGATCGACA
1 GCATACGGAGTTATTCCCAGTCTAAGAT-AGGACCAGACCGAGGGTTGCGACAGCAAGATCGACA
* * * * * *
33481298 GCACACAGGGGGGATCGGGTCGATCCCCG-GCTTGTGCATTTTGCCTCTCCGGCCGACTGAGCGA
65 GCACACAGGGGGGACCGGGCCGATCCCCGAG-TTGCGCATTATGCCTCTCCGACCGACTCAGC-A
**
33481362 CCAT-ACGCCCGTTTCGTGGGTTGGCTTAG
128 CC-TCACGCCCGTTTCGTGGGTTAACTTAG
33481391 GCATA-GCGAGTTCATT-CCATGTCTAAG
1 GCATACG-GAGTT-ATTCCCA-GTCTAAG
33481418 CCCCCGGATC
Statistics
Matches: 162, Mismatches: 15, Indels: 14
0.85 0.08 0.07
Matches are distributed among these distances:
156 2 0.01
157 135 0.83
158 24 0.15
159 1 0.01
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.22
Consensus pattern (156 bp):
GCATACGGAGTTATTCCCAGTCTAAGATAGGACCAGACCGAGGGTTGCGACAGCAAGATCGACAG
CACACAGGGGGGACCGGGCCGATCCCCGAGTTGCGCATTATGCCTCTCCGACCGACTCAGCACCT
CACGCCCGTTTCGTGGGTTAACTTAG
Found at i:33481547 original size:155 final size:157
Alignment explanation
Indices: 33481139--33481722 Score: 526
Period size: 157 Copynumber: 3.6 Consensus size: 157
33481129 GCAAGATCGA
* * *
33481139 CAGCATGCAGGGGGGACCGGGCCGATCCCCGAG-TTGCGCATTATGCCTCTCCGACCGGCTCAGC
1 CAGCACGCAGGGGGGACCGGGTCGATCCCCG-GCTTGCGCATTATGCCTCTCCGACCGACTCAGC
* * * * **
33481203 ACCTGCACGCTTGTTTCGTGGGTTAACTTAGGCATACGGAGTT-ATTCCCA-GTCTAAGATCAGA
65 ACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATT-CCATGTCTAAGA-C-CC
* * * *
33481266 CCAGACCGAGGGTTGCGACAGCA-GGA-TCGA
127 CCGGACCGAGGGTTGTGGCAG-ATGGACTCGG
* * * * * *
33481296 CAGCACACAGGGGGGATCGGGTCGATCCCCGGCTTGTGCATTTTGCCTCTCCGGCCGACTGAGCG
1 CAGCACGCAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGACTCAGC-
** * *
33481361 A-CCATACGCCCGTTTCGTGGGTTGGCTTAGGCATAGC-GAGTTCATTCCATGTCTAAG-CCCCC
65 ACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA-CAGAGTTCATTCCATGTCTAAGACCCCC
*
33481423 GGATCGAGGGTTGTGGCA-ATGGTACT-GG
129 GGACCGAGGGTTGTGGCAGATGG-ACTCGG
* * **
33481451 CAGCACGCAGAGGGGGACCGAGTCGATCCCCGGCTTGCGCATTATGCCTCTCCG-TCGGTTCAGC
1 CAGCACGCAG-GGGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGACTCAGC
* * *
33481515 ACCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGC
65 ACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCATGTCTAAGACCC--C
33481580 CGGACCGAGGGTTGTGGTAGCAAGACTGGCAGCGGGATCGG
128 CGGACCGAGGGTTGT-G--GC-AGA-TGG-A-C----TCGG
* * * * *
33481621 CAACATGTAGAGGGGGACCGGG-CTGATCCCCGGCTTGCGCATTATGCCTCTCCGATCGACTGAG
1 CAGCACGCAG-GGGGGACCGGGTC-GATCCCCGGCTTGCGCATTATGCCTCTCCGACCGACTCAG
* *
33481685 CGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATAC
64 CACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
33481723 GAAATTCATC
Statistics
Matches: 350, Mismatches: 49, Indels: 42
0.79 0.11 0.10
Matches are distributed among these distances:
153 1 0.00
154 4 0.01
155 83 0.24
156 45 0.13
157 88 0.25
158 27 0.08
159 1 0.00
161 2 0.01
162 1 0.00
163 1 0.00
164 4 0.01
165 1 0.00
169 2 0.01
170 50 0.14
171 40 0.11
ACGTcount: A:0.18, C:0.29, G:0.31, T:0.22
Consensus pattern (157 bp):
CAGCACGCAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGACTCAGCA
CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCATGTCTAAGACCCCCGG
ACCGAGGGTTGTGGCAGATGGACTCGG
Found at i:33481743 original size:326 final size:312
Alignment explanation
Indices: 33481139--33481744 Score: 704
Period size: 326 Copynumber: 1.9 Consensus size: 312
33481129 GCAAGATCGA
* *
33481139 CAGCATGCAGGGGGGACCGGGCCGATCCCCGAGTTGCGCATTATGCCTCTCCGACCGGCTCAGCA
1 CAGCACGCAGGGGGGACCGAGCCGATCCCCGAGTTGCGCATTATGCCTCTCCGACCGGCTCAGCA
* * * * *
33481204 CCTGCACGCTTGTTTCGTGGGTTAACTTAGGCATACGGAGTTATTCCCAGTCTAAGATCAGACCA
66 CCCGCACACTCGTTTCGTGGGTTAACTTAGGCATACAGAGTTATTCCCAGTCTAAGACCAGACCA
* * *
33481269 GACCGAGGGTTGCGACAGCAGGATCGACAGCACACAGGGGGGATCGGGTCGATCCCCGGCTTGTG
131 GACCGAGGGTTGCGACAGCAGGAGCGACAGCACACAGGGGGGACCGGGTCGATCCCCGGCTTGCG
* * *
33481334 CATTTTGCCTCTCCGGCCGACTGAGCGACCATACGCCCGTTTCGTGGGTTGGCTTAGGCATAGCG
196 CATTATGCCTCTCCGACCGACTGAGCGACCATACGCCCGTTTCGTGGGTTGACTTAGGCATAGCG
* *
33481399 AGTTCATTCCATGTCTAAGCCCCCGGATCGAGGGTTGTGGCAATGGTACTGG
261 AATTCATCCCATGTCTAAGCCCCCGGATCGAGGGTTGTGGCAATGGTACTGG
* * *
33481451 CAGCACGCAGAGGGGGACCGAGTCGATCCCCG-GCTTGCGCATTATGCCTCTCCG-TCGGTTCAG
1 CAGCACGCAG-GGGGGACCGAGCCGATCCCCGAG-TTGCGCATTATGCCTCTCCGACCGGCTCAG
** *
33481514 CACCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATT-CCATGTCTAAGCCCCA
64 CACCCGCACACTCGTTTCGTGGGTTAACTTAGGCATACAGAGTT-ATTCCCA-GTCTAAG-ACCA
* * * * *
33481578 G-CCGGACCGAGGGTTGTGGTAGCAAGACTGGCAGCGGGATCGGCAACATGTAGAGGGGGACCGG
126 GACCAGACCGAGGGTTG-CG-A-C-AG-CAGG-AGC--GA-CAGC-ACA--CAG-GGGGGACCGG
* * * *
33481642 G-CTGATCCCCGGCTTGCGCATTATGCCTCTCCGATCGACTGAGCGCCCGTACGCTCGTTTCGTG
178 GTC-GATCCCCGGCTTGCGCATTATGCCTCTCCGACCGACTGAGCGACCATACGCCCGTTTCGTG
33481706 GGTTGACTTAGGCATA-CGAAATTCATCCCCA-GTCTAAGC
242 GGTTGACTTAGGCATAGCG-AATTCAT-CCCATGTCTAAGC
33481745 ATACGGAGTT
Statistics
Matches: 243, Mismatches: 30, Indels: 28
0.81 0.10 0.09
Matches are distributed among these distances:
312 58 0.24
313 63 0.26
314 4 0.02
315 1 0.00
316 1 0.00
317 2 0.01
318 3 0.01
319 2 0.01
321 2 0.01
322 3 0.01
323 3 0.01
325 5 0.02
326 93 0.38
327 3 0.01
ACGTcount: A:0.19, C:0.29, G:0.31, T:0.22
Consensus pattern (312 bp):
CAGCACGCAGGGGGGACCGAGCCGATCCCCGAGTTGCGCATTATGCCTCTCCGACCGGCTCAGCA
CCCGCACACTCGTTTCGTGGGTTAACTTAGGCATACAGAGTTATTCCCAGTCTAAGACCAGACCA
GACCGAGGGTTGCGACAGCAGGAGCGACAGCACACAGGGGGGACCGGGTCGATCCCCGGCTTGCG
CATTATGCCTCTCCGACCGACTGAGCGACCATACGCCCGTTTCGTGGGTTGACTTAGGCATAGCG
AATTCATCCCATGTCTAAGCCCCCGGATCGAGGGTTGTGGCAATGGTACTGG
Found at i:33482111 original size:158 final size:157
Alignment explanation
Indices: 33481743--33482113 Score: 406
Period size: 158 Copynumber: 2.4 Consensus size: 157
33481733 CCCAGTCTAA
* * * * * * ** * ***
33481743 GCATACGGAGTTGATGCCTAGTCTAAGATC-GAACCGGACCGAGGGTTGCGACAGTAGGATCGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGACCAG-ACCGGACCGAGGATTGGGGTAGCAGGATCAAT
* *
33481807 AGCACGTAGGGGGACCGGGCCGATCCCCGGCTTGCGAATTCTACCCCTCCGGCCGGCTGAGCACC
65 AGCACGTAGGGGGACCAGGCCGATCCCCGACTTGCGAATTCTACCCCTCCGGCCGGCTGAGCACC
*
33481872 CGCACGCCCATTTCGTGGGTTGACTTAG
130 CGCACGCCCATTTCGTGAGTTGACTTAG
* **
33481900 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATTGAGGATTGGGGTAGCAGGATCAATA
1 GCATACGGAGTTCATTCCCAGTCTAAGACCAGACCGGACCGAGGATTGGGGTAGCAGGATCAATA
* * * * * * * *
33481965 GCACGTAGGGGGGATCAGGCCGATCTCCGACTTGCGCATTCTGCCTCTCCGGTCGGTTGAGCGCC
66 GCACGTA-GGGGGACCAGGCCGATCCCCGACTTGCGAATTCTACCCCTCCGGCCGGCTGAGCACC
* *
33482030 CGCACGCTCATTTCGTGAGTTGGCTTAG
130 CGCACGCCCATTTCGTGAGTTGACTTAG
* * *
33482058 GCATACGGAGTTCATT-CCATGTCTAAGCCCCAG-CCGGACCGAGGGTTGTGGTAGCA
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ACCAGACCGGACCGAGGATTGGGGTAGCA
33482114 AGACTGGTAG
Statistics
Matches: 178, Mismatches: 32, Indels: 7
0.82 0.15 0.03
Matches are distributed among these distances:
157 60 0.34
158 115 0.65
159 3 0.02
ACGTcount: A:0.20, C:0.27, G:0.32, T:0.21
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGACCAGACCGGACCGAGGATTGGGGTAGCAGGATCAATA
GCACGTAGGGGGACCAGGCCGATCCCCGACTTGCGAATTCTACCCCTCCGGCCGGCTGAGCACCC
GCACGCCCATTTCGTGAGTTGACTTAG
Found at i:33482277 original size:26 final size:26
Alignment explanation
Indices: 33482241--33482293 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
33482231 GTTGACTTAG
*
33482241 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
33482267 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
33482293 G
1 G
33482294 ATCAGGCTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:33482328 original size:524 final size:505
Alignment explanation
Indices: 33481234--33482451 Score: 1437
Period size: 524 Copynumber: 2.4 Consensus size: 505
33481224 GTTAACTTAG
*
33481234 GCATACGGAGTTATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGACAG
1 GCATACGGAGTTATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAGGATCGACAG
* * * *
33481299 CACACAGGGGGGATCGGGTCGATCCCCGGCTTGTGCATTTTGCCTCTCCGGCCGACTGAGCGA-C
66 CACGCA-GGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGC-ACC
** *
33481363 CATACGCCCGTTTCGTGGGTTGGCTTAGGCATAGCGAGTTCATTCCATGTCTAAGCCCCCGGATC
129 CGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAG-GAGTTCATTCCATGTCTAAGCCACCGGATC
* * * * * *
33481428 GAGGGTTGTGGCAATGGTACTGGCAGCACGCAGAGGGGGACCGAGTCGATCCCCGGCTTGCGCAT
193 GAGGATTGGGGCAATGGTAAT-G-AGCACGCAGAGGGGGACAGAGCCGATCCCCGACTTGCGCAT
* *
33481493 TATGCCTCTCCGTCGGTTCAGCACCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTT
256 TATGCCTCTCCGTCGGTTCAGCACCCGCACACTCATTTCGTGAGTTGGCTTAGGCATACAGAGTT
* *
33481558 CATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGTAGCAAGACTGGCAGCGGGATCGGCA
321 CATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGTAGCAAGACTGGCAGCGAGATCGACA
* * * * *
33481623 ACATGTAGAGGGGGACCGGGCTGATCCCCGGCTTGCGCATTATGCCTCTCCGATCGACTGAGCGC
386 ACACGCAGAAGGGGACCGAGCTGATCCCCGGCTTGCGCATTATGCCTCTCCGATCGACTAAGCGC
* *
33481688 CCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAATTCATCCCCAGTCTAA
451 CCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGAAATTCATCCCCAGTCTAA
* * * *
33481743 GCATACGGAGTTGATGCCTAGTCTAAGATC-GAACCGGACCGAGGGTTGCGACAGTAGGATCGGC
1 GCATACGGAGTT-ATTCCCAGTCTAAGATCAG-ACCGGACCGAGGGTTGCGACAGCAGGATCGAC
* * * * * *
33481807 AGCACGTAGGGGGACCGGGCCGATCCCCGGCTTGCGAATTCTACCCCTCCGGCCGGCTGAGCACC
64 AGCACGCAGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCACC
* * *
33481872 CGCACGCCCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATCAGACCG
129 CGCACGCCCGTTTCGTGGGTTGGCTTAGGCATA-GGAGTTCATT-CCATGTCTAAG--C-CACCG
* * * *
33481936 GATTGAGGATTGGGGTAGCA-GGATCAAT-AGCACGTAG-GGGGGATCAG-GCCGATCTCCGACT
189 GATCGAGGATTGGGGCA--ATGG-T-AATGAGCACGCAGAGGGGGA-CAGAGCCGATCCCCGACT
* * * *
33481997 TGCGCATTCTGCCTCTCCGGTCGGTTGAGCGCCCGCACGCTCATTTCGTGAGTTGGCTTAGGCAT
249 TGCGCATTATGCCTCTCC-GTCGGTTCAGCACCCGCACACTCATTTCGTGAGTTGGCTTAGGCAT
* *
33482062 ACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGTAGCAAGACTGGTAGCGA
313 ACAGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGTAGCAAGACTGGCAGCGA
* ***
33482127 GATCGACAGCACGCA-AAGGGGACCGAGCTGATCTTTGGCTTGCGCATTATGCCTCTCCGGCTGG
378 GATCGACAACACGCAGAAGGGGACCGAGCTGATCCCCGGCTTGCGCATTATG------C--CT--
* * * *
33482191 CCTCTCTGGTCGACTAAGCGCTCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
433 -CTC-C-GATCGACTAAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGAAATTCAT
33482256 CCCCAGTCTAA
495 CCCCAGTCTAA
* * * * *
33482267 GCATATGGAGTTCATTCCCAATCTAAGATCAGGCTGGACTGAGGGTTGCGACAGCAGGATCGACA
1 GCATACGGAGTT-ATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAGGATCGACA
* * ** * * *
33482332 GCACGCAGAGGGATCGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCATCTGGCTGAGCGCTC
65 GCACGCAGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCACCC
* * *
33482397 GCACACCCGTTTCATGGGTTGGCTTAGGCA-AGGGAGCTCATTCCATGTCTAAGCC
130 GCACGCCCGTTTCGTGGGTTGGCTTAGGCATA-GGAGTTCATTCCATGTCTAAGCC
33482452 CCAGTCGGAC
Statistics
Matches: 594, Mismatches: 86, Indels: 47
0.82 0.12 0.06
Matches are distributed among these distances:
508 1 0.00
509 105 0.18
510 54 0.09
511 66 0.11
512 140 0.24
513 2 0.00
514 2 0.00
515 2 0.00
517 1 0.00
519 2 0.00
521 1 0.00
522 6 0.01
523 18 0.03
524 193 0.32
525 1 0.00
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (505 bp):
GCATACGGAGTTATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAGGATCGACAG
CACGCAGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCACCCG
CACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGAGTTCATTCCATGTCTAAGCCACCGGATCGAG
GATTGGGGCAATGGTAATGAGCACGCAGAGGGGGACAGAGCCGATCCCCGACTTGCGCATTATGC
CTCTCCGTCGGTTCAGCACCCGCACACTCATTTCGTGAGTTGGCTTAGGCATACAGAGTTCATTC
CATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGTAGCAAGACTGGCAGCGAGATCGACAACACG
CAGAAGGGGACCGAGCTGATCCCCGGCTTGCGCATTATGCCTCTCCGATCGACTAAGCGCCCGCA
CACTCGTTTCGTGGGTTGACTTAGGCATACGAAATTCATCCCCAGTCTAA
Found at i:33483861 original size:26 final size:26
Alignment explanation
Indices: 33483832--33483884 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
33483822 GTTAACTTAG
33483832 GCAT-ACGAAGTTCATCCCCAGTCTAA
1 GCATAACGAA-TTCATCCCCAGTCTAA
* *
33483858 GCATAAGGAATTCATTCCCAGTCTAA
1 GCATAACGAATTCATCCCCAGTCTAA
33483884 G
1 G
33483885 ATCAAATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATAACGAATTCATCCCCAGTCTAA
Found at i:33484254 original size:354 final size:352
Alignment explanation
Indices: 33483610--33484258 Score: 772
Period size: 354 Copynumber: 1.8 Consensus size: 352
33483600 CCTCTTTAGT
*
33483610 CGGCTGAGGGCCCGCACGCATTTCATGGGTTGGCTTAGGAATACAAAGTTCATTCCTTGTCTAAG
1 CGGCTGAGCGCCCGCACGCATTTCATGGGTTGGCTTAGGAATACAAAGTTCATTCCTTGTCTAAG
* * * * *
33483675 CCCCAGCCAGACCGAGGGTTGTGGTAGCAGGACCGACAGTGGGATCGGTAGCACATAGAGGGGGA
66 CCCCAACCAGACCGAGGGTTGTGGCAGCAGGACCGACAGTGAGATCGGCAGCACACAGAGGGGGA
* * * *
33483740 CCGGGTTGATCCTCGACTTACGCATTATGCCTCTCCGACTGGCCTCTCTAGTCAGGTCAGCACCC
131 CCAGGCTGATCCTCGACTTACGCATTATGACTCTCCGACTGACCTCTCTAGTCAGGTCAGCACCC
** * *
33483805 GTACGCTCGTTTTGTGGGTTAACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATAAGGAATT
196 ACACGCTCGTTTCGTGGGTTAACTTAGGCATACGAAGTTCATCCCCAGACTAAGCATAAGGAATT
*
33483870 CATTCCCAGTCTAAGATCAAATCGGACCGAGGGTTGCGACAGCACGCAGGGGGGACCAGGCCGAT
261 CATTCCCAGTCTAAGATCAAATCAGACCGAGGGTTGCGACAGCACGCAGGGGGGACCAGGCCGAT
33483935 CCCGGCTTACGCATTCTGCATCTCCCC
326 CCCGGCTTACGCATTCTGCATCTCCCC
* ** **
33483962 CGGCTGAGCGCCCGCACGCTCGTTTTGTGGGTTGGCTT-GGACATACGGAGTTCATTCCATT-TC
1 CGGCTGAGCGCCCGCACG--CATTTCATGGGTTGGCTTAGGA-ATACAAAGTTCATTCC-TTGTC
* * * * * *
33484025 TATGCCCCAATCGGACCGAGGGTTGTGGCAGTAGGATCGGCAGTGAGATCGGCAGCACACAGAGG
62 TAAGCCCCAACCAGACCGAGGGTTGTGGCAGCAGGACCGACAGTGAGATCGGCAGCACACAGAGG
* * * ** * * *
33484090 TGGATCAGGCTGATCTTCGGTTTACGCATTATGACTCTTCGA-TCGACCTTTCT-GATC-GGTTG
127 GGGACCAGGCTGATCCTCGACTTACGCATTATGACTCTCCGACT-GACCTCTCTAG-TCAGG-TC
* * * * *
33484152 AGCGCCTACACGCTCGTTTCGTGGGTTGACTTCA-GCATACGGAGTTCATCCCCAGAGTAAGCAT
189 AGCACCCACACGCTCGTTTCGTGGGTTAACTT-AGGCATACGAAGTTCATCCCCAGACTAAGCAT
* * ** *
33484216 ATGGAGTTCATTCTGAGTCTAAGATCAGA-CTAGACCGAGGGTT
253 AAGGAATTCATTCCCAGTCTAAGATCAAATC-AGACCGAGGGTT
33484259 ATGGTAGTAG
Statistics
Matches: 244, Mismatches: 44, Indels: 16
0.80 0.14 0.05
Matches are distributed among these distances:
352 17 0.07
353 8 0.03
354 216 0.89
355 3 0.01
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.24
Consensus pattern (352 bp):
CGGCTGAGCGCCCGCACGCATTTCATGGGTTGGCTTAGGAATACAAAGTTCATTCCTTGTCTAAG
CCCCAACCAGACCGAGGGTTGTGGCAGCAGGACCGACAGTGAGATCGGCAGCACACAGAGGGGGA
CCAGGCTGATCCTCGACTTACGCATTATGACTCTCCGACTGACCTCTCTAGTCAGGTCAGCACCC
ACACGCTCGTTTCGTGGGTTAACTTAGGCATACGAAGTTCATCCCCAGACTAAGCATAAGGAATT
CATTCCCAGTCTAAGATCAAATCAGACCGAGGGTTGCGACAGCACGCAGGGGGGACCAGGCCGAT
CCCGGCTTACGCATTCTGCATCTCCCC
Found at i:33484605 original size:158 final size:159
Alignment explanation
Indices: 33484410--33484704 Score: 371
Period size: 158 Copynumber: 1.9 Consensus size: 159
33484400 AGTCAAACTG
* * * *
33484410 AGGGTTGTGGCAGCGGGATCGGCAGCACGCAGAGGGGGATC-GGGCTGATCCCCAGCTTACGCAT
1 AGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGGACCAGGTC-GATCCCCAGCTTACGCAT
* * * * *
33484474 TATGCCTCTTC-AACCGGCTCAGCGCTCGTACACTCGTTTCGTGGGTTGACTTATGCATACGAAG
65 TATGCCTCTTCGAACC-ACTCAACGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGAAG
33484538 TTCATTCCTAGTGTAAGATCGAACCGGACCA
129 TTCATTCCTAGTGTAAGATCGAACCGGACCA
* * * *
33484569 AGGGTTGTGGTAGCAGGATCGATAGCACGCAG-GGGGGACCAGGTCGATCCCCGGCTTGCGCATT
1 AGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGGACCAGGTCGATCCCCAGCTTACGCATT
* * * * * * *
33484633 CTGCCTCTTCGATCCACTGAATGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTT
66 ATGCCTCTTCGAACCACTCAACGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGAAGTT
33484698 CATTCCT
131 CATTCCT
33484705 TATCTAAGCA
Statistics
Matches: 114, Mismatches: 20, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
158 80 0.70
159 34 0.30
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.24
Consensus pattern (159 bp):
AGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGGACCAGGTCGATCCCCAGCTTACGCATT
ATGCCTCTTCGAACCACTCAACGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGAAGTT
CATTCCTAGTGTAAGATCGAACCGGACCA
Found at i:33485827 original size:12 final size:12
Alignment explanation
Indices: 33485812--33485841 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
33485802 CAGCAGGACT
33485812 GGCAGCGGGATC
1 GGCAGCGGGATC
33485824 GGCAGCGGGATC
1 GGCAGCGGGATC
33485836 GGCAGC
1 GGCAGC
33485842 ACGCAGAGAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.17, C:0.27, G:0.50, T:0.07
Consensus pattern (12 bp):
GGCAGCGGGATC
Found at i:33485983 original size:26 final size:26
Alignment explanation
Indices: 33485947--33485998 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
33485937 TTGACTTAGC
33485947 CATACGAAGTTCATCCCCAGTCTAAG
1 CATACGAAGTTCATCCCCAGTCTAAG
* *
33485973 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGAAGTTCATCCCCAGTCTAAG
33485999 ATCGAATAGG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (26 bp):
CATACGAAGTTCATCCCCAGTCTAAG
Found at i:33486484 original size:26 final size:26
Alignment explanation
Indices: 33486448--33486498 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
33486438 TGGCATAGGT
33486448 ATACGGAGTTCATT-CCATGTCTAAGC
1 ATACGGAGTTCATTCCCA-GTCTAAGC
33486474 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
33486499 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:33487193 original size:26 final size:26
Alignment explanation
Indices: 33487163--33487215 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33487153 GTTGACTTAG
*
33487163 GCATACGGAGTTCA-TCTCCAGTCTAA
1 GCATACAGAGTTCATTC-CCAGTCTAA
33487189 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
33487215 G
1 G
33487216 ATCGAACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:33487911 original size:26 final size:26
Alignment explanation
Indices: 33487861--33487913 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33487851 GTTGGCTTAG
*
33487861 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
33487887 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
33487913 G
1 G
33487914 ATCGAACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:33488384 original size:353 final size:355
Alignment explanation
Indices: 33487727--33488450 Score: 859
Period size: 353 Copynumber: 2.0 Consensus size: 355
33487717 ATCAGATCGA
* * * *
33487727 ACCGAGGGTTGCGGTAACAGGACCAACAGTAGGATCGGTAGCACATAAGGGGGTACCGCGTCGAT
1 ACCGAGGGTTGTGGCAACAGGACCAACAGCAGGATCGGTAGCACATAAGGGGGTACCGAGTCGAT
* * * * * * * * * *
33487792 CCTCGGCTTACGGATTCTTCCTCTCCGATCGACTGAGCACCCGTACGCTCGTTTCGTGGGTTGGC
66 CCCCGGCTTACGCATTATGCCTCTCCGACCGACTGAGCACCCATACGCTCATTTCATGGATTGAC
* * *
33487857 TTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGAACC
131 TTAGGCACACGGAGTTCATCCCATGTCTAAGCATACGAAGTTCATTCCCAATCTAAGATCGAACC
* *** * * **
33487922 AGATCGAGGGTTGCGGTAGTAGGATAGGCAGCACGCAGGAGGGACCGGGTCAATCCTTAGCTTGC
196 AGACCGAGGGTTGCAACAGTAGGATAGGCAGCACGCAGGAGGGAACGGGCCAATCCCCAGCTTGC
* * ** * * *
33487987 GCATTCTGCCTCTTCGATCGGCTGAGCACTTGCACGCTCGTTTCATGGGTTGGCTTAGGCATATG
261 GCATTCTGCCTCTCCGACCGGCTGAGCACCCGCACACCCGTTTCATGGGTTGGCTTAGGCATAGG
* *
33488052 GAGTTCATTCCATGTCTAAGCCCCAGTCGG
326 GAGTTCATTCCATGCCTAAGCCCCAGCCGG
** * * *
33488082 ACCGAGGGTTGTGGCAACAGGACCGGCAGCAGGATCGGTAGCATGCA-GAGGGGG-ATCGAGTTG
1 ACCGAGGGTTGTGGCAACAGGACCAACAGCAGGATCGGTAGCA--CATAAGGGGGTACCGAGTCG
* ** * *
33488145 ATCCCCGG-TTACTCATTATGCCTCTCCGACCGGTTGAGCGCCCATATGCTCATTTCATGGATTG
64 ATCCCCGGCTTACGCATTATGCCTCTCCGACCGACTGAGCACCCATACGCTCATTTCATGGATTG
* *
33488209 ACTTAGGCACACGGAGTTCATCCCCA-GTCTAAGCATACGAAGTTCATT-CCAGTCTAAGATCGG
129 ACTTAGGCACACGGAGTTCAT-CCCATGTCTAAGCATACGAAGTTCATTCCCAATCTAAGATCGA
* * * * * * *
33488272 ACCGGACCGAGGGTTGCAACAGTAGGATCA-GTAGCATGTAGGGGGGAACGGGCCGATCCCCGGC
193 ACCAGACCGAGGGTTGCAACAGTAGGAT-AGGCAGCACGCAGGAGGGAACGGGCCAATCCCCAGC
* *
33488336 TTGCGCATTCTGCCTCTCC-AGCCGGTTGAGCGCCCGCACACCCGTTTCATGGGTTGGCTTAGGC
257 TTGCGCATTCTGCCTCTCCGA-CCGGCTGAGCACCCGCACACCCGTTTCATGGGTTGGCTTAGGC
33488400 ATAGGGAGTTCATTCCATGCCTAAGCCCCAGCCGG
321 ATAGGGAGTTCATTCCATGCCTAAGCCCCAGCCGG
33488435 ACCGAGGGTTGTGGCA
1 ACCGAGGGTTGTGGCA
33488451 GCGGGATCGG
Statistics
Matches: 309, Mismatches: 55, Indels: 12
0.82 0.15 0.03
Matches are distributed among these distances:
352 1 0.00
353 162 0.52
354 84 0.27
355 54 0.17
356 6 0.02
357 2 0.01
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.23
Consensus pattern (355 bp):
ACCGAGGGTTGTGGCAACAGGACCAACAGCAGGATCGGTAGCACATAAGGGGGTACCGAGTCGAT
CCCCGGCTTACGCATTATGCCTCTCCGACCGACTGAGCACCCATACGCTCATTTCATGGATTGAC
TTAGGCACACGGAGTTCATCCCATGTCTAAGCATACGAAGTTCATTCCCAATCTAAGATCGAACC
AGACCGAGGGTTGCAACAGTAGGATAGGCAGCACGCAGGAGGGAACGGGCCAATCCCCAGCTTGC
GCATTCTGCCTCTCCGACCGGCTGAGCACCCGCACACCCGTTTCATGGGTTGGCTTAGGCATAGG
GAGTTCATTCCATGCCTAAGCCCCAGCCGG
Found at i:33489468 original size:26 final size:26
Alignment explanation
Indices: 33489438--33489490 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33489428 GTTGACTTAG
*
33489438 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATAAGGAGTTCATTCCC-AGTCTAA
33489464 GCATAAGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAGTCTAA
33489490 G
1 G
33489491 ATTGAACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCCAGTCTAA
Found at i:33495036 original size:26 final size:26
Alignment explanation
Indices: 33495007--33495060 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
33494997 GGTTGACTTT
*
33495007 AGCATATGGAGTTCA-TCCCTAGTCTA
1 AGCATACGGAGTTCATTCCC-AGTCTA
33495033 AGCATACGGAGTTCATTCCCAGTCTA
1 AGCATACGGAGTTCATTCCCAGTCTA
33495059 AG
1 AG
33495061 ATCGACTCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (26 bp):
AGCATACGGAGTTCATTCCCAGTCTA
Found at i:33495336 original size:158 final size:158
Alignment explanation
Indices: 33495174--33495535 Score: 401
Period size: 157 Copynumber: 2.3 Consensus size: 158
33495164 CGTACGTCCA
* *
33495174 TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCGGACCAAGGGT
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGGACCAAGGGT
** * * * * * **
33495238 TGTGGCAGCGGGACCGACAGCACATAGAGGGGACAGGGCTGATC-CCTGGCTTGTGCATTATGCC
66 TACGACAGCAGGACCAACAGCACATAGA-AGGACAGGGCCGATCTCC-GGCTTACGCATTATGCC
**
33495302 TCTT-CGGCCGACTCAGCACCCACACGCTCG
129 T-TTCCGAACGACTCAGCACCCACACGCTCG
* * * *
33495332 TTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCGAGGG
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCGGACCAAGGG
* * * *
33495395 TTACGACAGCAGGATCAACAGCACGTAGAAGGACCGGGCCGATCTCCGGCTTACGCATTTTGCCT
65 TTACGACAGCAGGACCAACAGCACATAGAAGGACAGGGCCGATCTCCGGCTTACGCATTATGCCT
* * * * *
33495460 TTCCGAATGGCTGAGCGCCCGCACGCTCG
130 TTCCGAACGACTCAGCACCCACACGCTCG
* *
33495489 TTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCTATGTCTAAGCA
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
33495536 TACAGAGTTT
Statistics
Matches: 169, Mismatches: 29, Indels: 12
0.80 0.14 0.06
Matches are distributed among these distances:
156 4 0.02
157 87 0.51
158 75 0.44
159 3 0.02
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (158 bp):
TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGGACCAAGGGT
TACGACAGCAGGACCAACAGCACATAGAAGGACAGGGCCGATCTCCGGCTTACGCATTATGCCTT
TCCGAACGACTCAGCACCCACACGCTCG
Found at i:33495533 original size:157 final size:156
Alignment explanation
Indices: 33495034--33495523 Score: 461
Period size: 158 Copynumber: 3.1 Consensus size: 156
33495024 CCTAGTCTAA
* *
33495034 GCATACGGAGTTCATTCCCAGTCTAAGATC-GACTCGGACTGAGGGTTACGACAGTAGGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGAC-CGGACCGAGGGTTACGACAGCAGGATCGAC
* * * *** * * * **
33495098 AGCACGCAAGGGGGATCAAACTGATCCTCGGCTTACGCATTTTACCTCTCC-CATCGACTGAAAG
65 AGCACG-TAGAGGGACCGGGCTGATCC-CGGCTTACGCATTTTGCCTTTCCGAAT-GACTGAGCG
* *
33495162 CCCGTACG-TCCATTTCGTGGGTTGGCTTAG
127 CCCGCACGCT-CGTTTCGTGGGTTGGCTTAG
* ** * ** * * *
33495192 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCGGACCAAGGGTTGTGGCAGCGGGACCGA
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTACGACAGCAGGATCGA
* * ** * *** *
33495255 CAGCACATAGAGGGGACAGGGCTGATCCCTGGCTTGTGCATTATGCCTCTT-CGGCCGACTCAGC
64 CAGCACGTAGA-GGGACCGGGCTGATCCC-GGCTTACGCATTTTGCCT-TTCCGAATGACTGAGC
* * *
33495319 ACCCACACGCTCGTTTCGTGGGTTGACTTAG
126 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* *
33495350 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGACAGCAGGATCAACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGACAGCAGGATCGACA
* * *
33495415 GCACGTAGAAGGACCGGGCCGATCTCCGGCTTACGCATTTTGCCTTTCCGAATGGCTGAGCGCCC
66 GCACGTAGAGGGACCGGGCTGATC-CCGGCTTACGCATTTTGCCTTTCCGAATGACTGAGCGCCC
33495480 GCACGCTCGTTTCGTGGGTTGGCTTAG
130 GCACGCTCGTTTCGTGGGTTGGCTTAG
*
33495507 GCATACAGAGTTCATTC
1 GCATACGGAGTTCATTC
33495524 TATGTCTAAG
Statistics
Matches: 258, Mismatches: 62, Indels: 25
0.75 0.18 0.07
Matches are distributed among these distances:
156 2 0.01
157 87 0.34
158 161 0.62
159 7 0.03
160 1 0.00
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.23
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGACAGCAGGATCGACA
GCACGTAGAGGGACCGGGCTGATCCCGGCTTACGCATTTTGCCTTTCCGAATGACTGAGCGCCCG
CACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:33495556 original size:26 final size:26
Alignment explanation
Indices: 33495507--33495559 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
33495497 GTTGGCTTAG
*
33495507 GCATACAGAGTTCATTCTATGTCTAA
1 GCATACAGAGTTCATTCCATGTCTAA
*
33495533 GCATACAGAGTTTATTCCCA-GTCTAA
1 GCATACAGAGTTCATT-CCATGTCTAA
33495559 G
1 G
33495560 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.32
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGTCTAA
Found at i:33496940 original size:26 final size:26
Alignment explanation
Indices: 33496911--33496963 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
33496901 GTTGACTTAG
33496911 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
33496937 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
33496963 G
1 G
33496964 ATCAGATCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:33497453 original size:26 final size:26
Alignment explanation
Indices: 33497424--33497476 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
33497414 GTTGACTTCG
*
33497424 GCATACGGAGTTCAACCCCAGTCTAA
1 GCATACAGAGTTCAACCCCAGTCTAA
**
33497450 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCAACCCCAGTCTAA
33497476 G
1 G
33497477 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (26 bp):
GCATACAGAGTTCAACCCCAGTCTAA
Found at i:33499735 original size:162 final size:157
Alignment explanation
Indices: 33499366--33499738 Score: 362
Period size: 161 Copynumber: 2.3 Consensus size: 157
33499356 CATCCCCAAT
** * * * *
33499366 CTTAGCATACAGAGTTTATTCCCAGTCTAAGATCAGACCGAACCGATGGTTGTGGTAGCAGGATC
1 CTTAGCATAGGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATC
* * * * *
33499431 GGTAGCACGAAGTGGGGACCGAGTCGATCCCCGACTTACGCATTCTGCCTCTCCGATCGACTGAG
66 GGTAGCACGAAGTGGGGACCGAGGCGATCCCCGACTGACACATTATGCCTCTCCGA-CGACTCAG
* * *
33499496 CGCCCTCCACTCCAATTTCATGGGTTGG
130 CGCCCGCCACACCAATTTCATGGGTTGA
** * *
33499524 CTTAGCATAGGGAG-TCATT-CCATGTCTAAGCCCCA-ACCAGACAGAGGGTTGTGGCAGCAGCG
1 CTTAGCATAGGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTGTGGCAGCA--G
* * *
33499586 GTATCGGTAGCACGTAGAG-GGGGACC-AGGCTGATCCCTGGCTGGCACATTATGCCTCTCCGA-
62 G-ATCGGTAGCACG-A-AGTGGGGACCGAGGC-GATCCCCGACTGACACATTATGCCTCTCCGAC
* * *
33499648 GGCTCAGTGCCCGCCACACCTATTTCATGGCGTTGA
123 GACTCAGCGCCCGCCACACCAATTTCATGG-GTTGA
* **
33499684 CTTAGGCATATGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGTG
1 CTTA-GCATAGGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTG
33499739 TAGGTAGGAT
Statistics
Matches: 171, Mismatches: 31, Indels: 22
0.76 0.14 0.10
Matches are distributed among these distances:
156 3 0.02
157 30 0.18
158 14 0.08
159 26 0.15
160 23 0.13
161 42 0.25
162 30 0.18
163 3 0.02
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.23
Consensus pattern (157 bp):
CTTAGCATAGGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATC
GGTAGCACGAAGTGGGGACCGAGGCGATCCCCGACTGACACATTATGCCTCTCCGACGACTCAGC
GCCCGCCACACCAATTTCATGGGTTGA
Found at i:33499884 original size:26 final size:25
Alignment explanation
Indices: 33499855--33499908 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 25
33499845 TAGGCATACA
33499855 GAGTTCATT-CCATGTCTAAGCATATG
1 GAGTTCATTCCCA-GTCTAAG-ATATG
*
33499881 GAGTTCATTCCCAGTCTAAGATTTG
1 GAGTTCATTCCCAGTCTAAGATATG
33499906 GAG
1 GAG
33499909 CCATGGTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
25 7 0.27
26 16 0.62
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.22, T:0.33
Consensus pattern (25 bp):
GAGTTCATTCCCAGTCTAAGATATG
Found at i:33500729 original size:158 final size:159
Alignment explanation
Indices: 33500567--33500931 Score: 373
Period size: 158 Copynumber: 2.3 Consensus size: 159
33500557 CCCGCACGTC
* * **
33500567 CATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCGGACCGAGG
1 CATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGATCAAACCGAGG
** * * * * * *
33500631 GTTGTGACAGCAAGACCGACAGCACGCAAAGGGGGATCGA-CCGATCCTCGACTTGCGCATTTTG
66 GTTACGACAGCAAGACCGACAGCACACAAA-GGGGACCGAGCCAATCCTCGACATGCGCATTCTA
* * * *
33500695 CCTCTTTGACTGGTTCAGCAC-CC-ACACGCT
130 CCTCTCTG-CTCG-ACAGAACGCCTACACGCT
* * * * *
33500725 CATTTCATGGGGTGACTTAGGCATACGGAGTTCATTCCCAT-TCTAAG-ATCAGATCAAACTGAG
1 CATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGATCAAACCGAG
* * * * * *
33500788 GGTTACGGCAGCAGGATCGATAGCACACAGAGGGGACCGAGCCAATCCTCGGCATGCGCATTCTA
65 GGTTACGACAGCAAGACCGACAGCACACAAAGGGGACCGAGCCAATCCTCGACATGCGCATTCTA
* * *
33500853 CCTCTCTGGTCGACTGAACGCCTGCACGCT
130 CCTCTCTGCTCGACAGAACGCCTACACGCT
*
33500883 CATTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCA
1 CATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
33500932 TACAGAGTTC
Statistics
Matches: 166, Mismatches: 34, Indels: 13
0.78 0.16 0.06
Matches are distributed among these distances:
156 4 0.02
157 19 0.11
158 138 0.83
159 5 0.03
ACGTcount: A:0.22, C:0.26, G:0.27, T:0.24
Consensus pattern (159 bp):
CATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGATCAAACCGAGG
GTTACGACAGCAAGACCGACAGCACACAAAGGGGACCGAGCCAATCCTCGACATGCGCATTCTAC
CTCTCTGCTCGACAGAACGCCTACACGCT
Found at i:33501088 original size:183 final size:184
Alignment explanation
Indices: 33500745--33501113 Score: 460
Period size: 183 Copynumber: 2.0 Consensus size: 184
33500735 GGTGACTTAG
* * * * *
33500745 GCATACGGAGTTCATTCCCATTCTAAGATCAGATCAAACTGAGGGTTACGGCAGCAGGATCGATA
1 GCATACAGAGTTCATTCCCATCCTAAGATCAGACCAAACTGAGGGTTACGACAGCAGGATCGACA
* *
33500810 GCACACAGAGGGGACCGAGCCAATCCTCGGCATGCGCATTCTACCTCTCTGGTCGACTGAACGCC
66 GCACACAGAGGGGACCGAGCCAATCCTCGGCATACACATTCTACCTCTCTGGTCGACTGAACGCC
* * *
33500875 TGCACGCTCATTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAA
131 CGCACGCTCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
* ** * *
33500929 GCATACAGAGTTCATTCCCATCCTTAGATCAGACCGGA-TCGAGGGTTGCGATAGCAGGATCGAC
1 GCATACAGAGTTCATTCCCATCCTAAGATCAGACCAAACT-GAGGGTTACGACAGCAGGATCGAC
* * * * *
33500993 AG-ACGCAG-GTGGGATCGAGCCAATCCTCGGCTTACATATTCTACCTCTCTGG-CTGACTGAGC
65 AGCACACAGAG-GGGACCGAGCCAATCCTCGGCATACACATTCTACCTCTCTGGTC-GACTGAAC
* * *
33501055 GCCCGCATGC-CTGTTTCATGGGTTGGTTTAGGCATAGGGAGTTCATTCCATGTCTAA
128 GCCCGCACGCTC-ATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
33501112 GC
1 GC
33501114 CCCTGTCGGA
Statistics
Matches: 158, Mismatches: 23, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
182 3 0.02
183 101 0.64
184 54 0.34
ACGTcount: A:0.23, C:0.26, G:0.26, T:0.25
Consensus pattern (184 bp):
GCATACAGAGTTCATTCCCATCCTAAGATCAGACCAAACTGAGGGTTACGACAGCAGGATCGACA
GCACACAGAGGGGACCGAGCCAATCCTCGGCATACACATTCTACCTCTCTGGTCGACTGAACGCC
CGCACGCTCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
Found at i:33501453 original size:26 final size:26
Alignment explanation
Indices: 33501404--33501456 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33501394 GTTGCTTTAG
*
33501404 GCATACGGAGTTCATTGCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
33501430 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
33501456 G
1 G
33501457 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:33502295 original size:158 final size:157
Alignment explanation
Indices: 33501813--33502311 Score: 459
Period size: 158 Copynumber: 3.2 Consensus size: 157
33501803 AGTCTAAGCT
* * * *
33501813 TACGGAGTTCATTCATAGTCTAAGGTCAGATCGAACCAAGGGTTGCGGCAGCAGGATCGACAGCA
1 TACGGAGTTCATTCAAAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCA
** * * ** * * *
33501878 CGCAGGAGGGACCGGGCCAATCCTCGGCTTGCACATTCTGCCTCTCTGGTCGACTGAGCGCCCGC
66 CATAGGGGGGACTGGGCTGATCCTCGGCTTGCACATTCTACCTCTCCGGTCGACTGAGCGCCCGT
* *
33501943 ATGCCCA-TTTCGTGGGTTGGCTTAGGCA
131 ACG-CTAGTTTCGTGGGTTGGCTTA-GCA
* * * ** * * * *
33501971 TAGGGAGTTCATTCCATGTCTAAGCCCCAGCT-GGACCGAGGTTTGTGGCAGC-GAGA-CCAGCA
1 TACGGAGTTCATTCAAAGTCTAAG-ATCAGATCGGACCGAGGGTTGCGGCAGCAG-GATCGA-CA
* * * * * * * *
33502033 GCACATAGTGGGGGACTAGGTTGATCCTCGGCTTGCGCATT-AAGCCTCTTCGATCGGCTCAGCG
63 GCACATAG-GGGGGACTGGGCTGATCCTCGGCTTGCACATTCTA-CCTCTCCGGTCGACTGAGCG
* * * * **
33502097 GCCGTACGCTCGTTTCATTGGTTAACTTATGCA
126 CCCGTACGCTAGTTTCGTGGGTTGGCTTA-GCA
* * *
33502130 TATGGAGTTCATTCAAAGTCTAAGATTAGATCGGACCGAGGGTTGCGACAGCAGGATCGACAGCA
1 TACGGAGTTCATTCAAAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCA
* * *
33502195 CATAGGGGGGACTGGGCTGATCCCCAGCTTGCACATTCTACCTCTCCGGCCGACTGAGCGCCCGT
66 CATAGGGGGGACTGGGCTGATCCTCGGCTTGCACATTCTACCTCTCCGGTCGACTGAGCGCCCGT
*
33502260 ACGTTAGTTTCGTGGGTTGGCTTAGCCA
131 ACGCTAGTTTCGTGGGTTGGCTTAG-CA
* *
33502288 TACGGAGTTCATTCCATGTCTAAG
1 TACGGAGTTCATTCAAAGTCTAAG
33502312 CATACGGAGT
Statistics
Matches: 260, Mismatches: 70, Indels: 22
0.74 0.20 0.06
Matches are distributed among these distances:
157 4 0.02
158 137 0.53
159 116 0.45
160 3 0.01
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (157 bp):
TACGGAGTTCATTCAAAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCA
CATAGGGGGGACTGGGCTGATCCTCGGCTTGCACATTCTACCTCTCCGGTCGACTGAGCGCCCGT
ACGCTAGTTTCGTGGGTTGGCTTAGCA
Found at i:33502335 original size:26 final size:26
Alignment explanation
Indices: 33502286--33502337 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
33502276 TTGGCTTAGC
*
33502286 CATACGGAGTTCATTCCATGTCTAAG
1 CATACGGAGTTCATTCCATATCTAAG
33502312 CATACGGAGTTCATTCCCA-ATCTAAG
1 CATACGGAGTTCATT-CCATATCTAAG
33502338 ATTTTCAGCC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCATATCTAAG
Found at i:33503471 original size:158 final size:157
Alignment explanation
Indices: 33503004--33503661 Score: 666
Period size: 158 Copynumber: 4.2 Consensus size: 157
33502994 CCCAGCCTAA
* * *
33503004 GCATACGGAGTTCATTCCCAGT-TAAGATCAGACCAGACTGAGGGTTGCGATAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGACAGCAGGATCGACA
* * * * *
33503068 TCACGCAGGGGGGACCAGGTCGATCCCC-GACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCCC
66 GCACGCAGGGGGGACC-GGCCGATCCCCAG-CTTGCGCATTCTGCCTCTCCGTCTGGCTGAGCAC
* * * * *
33503132 CCGTACGCCCATTTTGTGGGTTGGCTTAG
129 CCGCACGCTCGTTTCGTGGGTTGACTTAG
* * *** * *
33503161 GCATAGGGAGTTCGTT-CCATGTCTAATCCCCAG-CCAGACCGAGGGTTCTGACAGCGGGA-CAG
1 GCATACGGAGTTCATTCCCA-GTCTAA-GATCAGACCAGACCGAGGGTTGTGACAGCAGGATC-G
* * * * * * *
33503223 ATAGCACGTAGAGGGGGATCGGGCCGATCCCTAGCTTGCGCATTATGCCTCTTCGTCTGGCTCAG
63 ACAGCACGCAG-GGGGGA-CCGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGTCTGGCTGAG
** * * *
33503288 TGCCTGCACGCTCGTTTCGTTGGTTGACTTAT
126 CACCCGCACGCTCGTTTCGTGGGTTGACTTAG
** * *
33503320 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACTGAGGGTTGTGACAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGACAGCAGGATCGACA
* * * * * * *
33503385 GGACGCAGGGGGGACCGTGCCGATCCTCGGCTTACGAATTCGGCCTCTCCGGTC-GGTTGAGCAC
66 GCACGCAGGGGGGACCG-GCCGATCCCCAGCTTGCGCATTCTGCCTCTCC-GTCTGGCTGAGCAC
* * * *
33503449 CTGCTCGCTCGTTTGGTGGGTTGACTTAT
129 CCGCACGCTCGTTTCGTGGGTTGACTTAG
* *
33503478 GCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACCGAGGGTTGTGACAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGACAGCAGGATCGACA
* * *
33503543 GGACGCA-GGGGGACCGAGCCGATCCCCAGCTTGCGCATTCTGCCTTTCCGACTGGCTGAGCACC
66 GCACGCAGGGGGGACCG-GCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGTCTGGCTGAGCACC
* *
33503607 CGCACGCTCGTTTCATGGGTTGGCTTAG
130 CGCACGCTCGTTTCGTGGGTTGACTTAG
*
33503635 GCATACGGAGGTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
33503662 CATATGGAGT
Statistics
Matches: 406, Mismatches: 81, Indels: 28
0.79 0.16 0.05
Matches are distributed among these distances:
156 8 0.02
157 108 0.27
158 164 0.40
159 120 0.30
160 6 0.01
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGACAGCAGGATCGACA
GCACGCAGGGGGGACCGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGTCTGGCTGAGCACCC
GCACGCTCGTTTCGTGGGTTGACTTAG
Found at i:33503664 original size:26 final size:26
Alignment explanation
Indices: 33503635--33503687 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
33503625 GTTGGCTTAG
33503635 GCATACGGAGGTCATT-CCATGTCTAA
1 GCATACGGAGGTCATTCCCA-GTCTAA
* *
33503661 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGGTCATTCCCAGTCTAA
33503687 G
1 G
33503688 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGGTCATTCCCAGTCTAA
Found at i:33504759 original size:171 final size:170
Alignment explanation
Indices: 33504446--33504884 Score: 578
Period size: 171 Copynumber: 2.6 Consensus size: 170
33504436 CAGGATTGGT
* * * * *
33504446 AGCACGCAG-GAGGGACCGGGCCGATCCCCGGCTTGCTCATTCTGCCTCTCCGGCCGATTGAGCG
1 AGCACGCAGAGGGGGATCGGGCTGATCCCCGGCTTGCGCATTATGCCTCTCC-GCCGATTGAGCG
* * *
33504510 CCCGTACGCTCA-TTTCATGGGCTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAAC
65 CCCGTACGCT-AGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAAC
* * * * *
33504574 CGAACCGGGGGTTGTGGTAGTAGGACTGGCAACGGGATCGAC
129 CGAACCGAGGGTTGTGGCAGCAGGACCGACAACGGGATCGAC
* *
33504616 AGCACGCAGAGGGGGATCGGGCTGATCCCCGGCTTGCGCATTATGCCTCTCCAGCCGGTTGAGTG
1 AGCACGCAGAGGGGGATCGGGCTGATCCCCGGCTTGCGCATTATGCCTCTCC-GCCGATTGAGCG
** **
33504681 CCCGTACGCTAGTTTCATGGGTTGACTTAGGCATACAGAGTTTTTTCCATGTCTAAGCCCCAGTC
65 CCCGTACGCTAGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAACC
*
33504746 GGACCGAGGGTTGTGGCAGCAGGACCGACAACGGGATCGAC
130 GAACCGAGGGTTGTGGCAGCAGGACCGACAACGGGATCGAC
** *
33504787 AGCACGC-GAAGGGGGATCGGGCTGATCCCCGGCTTATGCATTATGCCTCTCCGACCGACTGAGC
1 AGCACGCAG-AGGGGGATCGGGCTGATCCCCGGCTTGCGCATTATGCCTCTCCG-CCGATTGAGC
* * *
33504851 GCCCATACGCTTGTTTCCTGGGTTGACTTAGGCA
64 GCCCGTACGCTAGTTTCATGGGTTGACTTAGGCA
33504885 AATGGAGTTC
Statistics
Matches: 236, Mismatches: 29, Indels: 7
0.87 0.11 0.03
Matches are distributed among these distances:
170 12 0.05
171 224 0.95
ACGTcount: A:0.18, C:0.29, G:0.31, T:0.22
Consensus pattern (170 bp):
AGCACGCAGAGGGGGATCGGGCTGATCCCCGGCTTGCGCATTATGCCTCTCCGCCGATTGAGCGC
CCGTACGCTAGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAACCG
AACCGAGGGTTGTGGCAGCAGGACCGACAACGGGATCGAC
Found at i:33505280 original size:159 final size:156
Alignment explanation
Indices: 33504916--33505400 Score: 453
Period size: 159 Copynumber: 3.1 Consensus size: 156
33504906 AAGCATACAA
* * *
33504916 AGTTCATTCC-CAGTCTAAGATCGGACTGGATCGAGGGTTGCGACAGTAGGATCGGTAACACGCA
1 AGTTCATTCCTC-GTCTAAGATCGGACTGGACCGAGGGTTGCGACAGCAGGATCGGTAGCACGCA
* * * * *
33504980 AGGGGATCGGGTCGATCCCCGGCTTACGCATTCTGCCTC-TCTGGCCTGCTGAGCGCCTGCACAC
65 GGGGGATCGGGTCGATCCCCGGCTTACGCATTCTGCCTCTTC-GGCCGGCT-AACGCCCGCACGC
* * * *
33505044 CCGTTTTATGGGTTGGCTTAGGCATAGGG
128 TCGTTTCATGGGTTGACTTAGGCATACGG
* ** * * * * **
33505073 AGTTCATTCCAT-GTCTAAG-CCCTAGCCGGACTGAGGGTTGTGGCAGCAGGA-CTGGCCGCACG
1 AGTTCATTCC-TCGTCTAAGATCGGA-CTGGACCGAGGGTTGCGACAGCAGGATC-GGTAGCACG
* *
33505135 CAGCGAGGGATCGGGTCGATCCCCAGCTTACGCATTATGCCTCTTCGGCCGGCTCAACGCCCGCA
63 CAG-G-GGGATCGGGTCGATCCCCGGCTTACGCATTCTGCCTCTTCGGCCGGCT-AACGCCCGCA
* * *
33505200 CGCTCGTTTCGTGGGTTGACTTATGAATACGG
125 CGCTCGTTTCATGGGTTGACTTAGGCATACGG
* * * * *
33505232 AGTTCATTCCTCGTCTAAGATCGGACTAGACCAAGGGTTGCGATAGCAGGATCGATAGCATGCAG
1 AGTTCATTCCTCGTCTAAGATCGGACTGGACCGAGGGTTGCGACAGCAGGATCGGTAGCACGCA-
* * * * * * * *
33505297 GGGGGACCGGGTCGATCCCTGGCTTGCACATTCTGCCTCTCCTGTCGGCTAA-GCATCCGTACGC
65 GGGGGATCGGGTCGATCCCCGGCTTACGCATTCTGCCTCTTCGGCCGGCTAACGC--CCGCACGC
33505361 TCGTTTCATGGGTT-AGCTTAGGCATACGG
128 TCGTTTCATGGGTTGA-CTTAGGCATACGG
33505390 AGTTCATTCCT
1 AGTTCATTCCT
33505401 TGTAAGCATA
Statistics
Matches: 260, Mismatches: 54, Indels: 27
0.76 0.16 0.08
Matches are distributed among these distances:
156 5 0.02
157 48 0.18
158 83 0.32
159 118 0.45
160 6 0.02
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.25
Consensus pattern (156 bp):
AGTTCATTCCTCGTCTAAGATCGGACTGGACCGAGGGTTGCGACAGCAGGATCGGTAGCACGCAG
GGGGATCGGGTCGATCCCCGGCTTACGCATTCTGCCTCTTCGGCCGGCTAACGCCCGCACGCTCG
TTTCATGGGTTGACTTAGGCATACGG
Found at i:33505714 original size:13 final size:13
Alignment explanation
Indices: 33505696--33505721 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
33505686 TTCACATTAT
33505696 GCCTCTCCGGTCG
1 GCCTCTCCGGTCG
33505709 GCCTCTCCGGTCG
1 GCCTCTCCGGTCG
33505722 ACTGAACGCC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.00, C:0.46, G:0.31, T:0.23
Consensus pattern (13 bp):
GCCTCTCCGGTCG
Found at i:33506690 original size:26 final size:26
Alignment explanation
Indices: 33506642--33506694 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
33506632 TAGACCATAG
*
33506642 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCACAGTCTAA
* * *
33506668 GCATACGGAGTTCATTCATAGTCTAA
1 GCATACGAAGTTCATCCACAGTCTAA
33506694 G
1 G
33506695 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCACAGTCTAA
Found at i:33506982 original size:158 final size:158
Alignment explanation
Indices: 33506791--33507168 Score: 408
Period size: 158 Copynumber: 2.4 Consensus size: 158
33506781 CGACCGGTTG
* * * * * * *
33506791 AGCGCCCGCATGCCCATTTTGTGAGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCT
1 AGCGCCCGCACGCTCGTTTCGTGAGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCACT
* * **
33506856 AG-CCAGA-CGAGGGCTGTGGCAGCGAGATCGGCAGCACGTAGAGGGGCATTAGGCCGATCCCCG
66 AGACCAGATCGAGGGCTGTGGCAGCAAGATCGACAGCACGTAG-GGGGCACCAGGCCGATCCCCG
* *
33506919 GCTTACGCATTATGCCTCT-TCAGTC-GACTC
130 ACTTACGCATT-TGCCTCTAT-AGCCTG-CTC
* * *
33506949 AGCGCCCGCACGCTCGTTTCGTGCGTTGACTTAGGCATATGGAGTTCATTCCCA-GTCTAA-CAT
1 AGCGCCCGCACGCTCGTTTCGTGAGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAAGCAC
* * * * * * *
33507012 TGGACCAGATTGAGGGTTGTGGCAGCAAGATCGATAGTACGTAGGGGGCACCGGGTCGATCCCCG
65 TAGACCAGATCGAGGGCTGTGGCAGCAAGATCGACAGCACGTAGGGGGCACCAGGCCGATCCCCG
* * *
33507077 ACTTGCGCATTTGCCTCTATGGCCTGCTG
130 ACTTACGCATTTGCCTCTATAGCCTGCTC
* * *
33507106 AGCGCCCGCACGCTCGTTTCGTGGGTTGCCTTGGGCATACGGAGTTCATTCCATGTCTAAGCA
1 AGCGCCCGCACGCTCGTTTCGTGAGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
33507169 TACGGAGTTC
Statistics
Matches: 184, Mismatches: 29, Indels: 14
0.81 0.13 0.06
Matches are distributed among these distances:
156 3 0.02
157 66 0.36
158 84 0.46
159 31 0.17
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.25
Consensus pattern (158 bp):
AGCGCCCGCACGCTCGTTTCGTGAGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCACT
AGACCAGATCGAGGGCTGTGGCAGCAAGATCGACAGCACGTAGGGGGCACCAGGCCGATCCCCGA
CTTACGCATTTGCCTCTATAGCCTGCTC
Found at i:33507176 original size:26 final size:26
Alignment explanation
Indices: 33507140--33507192 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
33507130 GTTGCCTTGG
33507140 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
33507166 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
33507192 G
1 G
33507193 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:33507894 original size:26 final size:26
Alignment explanation
Indices: 33507864--33507916 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
33507854 GTTGACTTAG
33507864 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
33507890 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
33507916 G
1 G
33507917 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:33508340 original size:159 final size:157
Alignment explanation
Indices: 33507890--33508392 Score: 469
Period size: 159 Copynumber: 3.2 Consensus size: 157
33507880 CCCAGTCTAA
* * * *
33507890 GCATATGGAGTTCATTCCTAGTCTAAGATCGGATCGGACCGAGCGTTACGGTAGCAGGATCGACA
1 GCATATGGAGTTCATT-CTAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGACA
* * * * *
33507955 GCAC-ACA-AGGGGGA-TCGGGCCAATCCCCGGCTTGTACATTCTACCTTTTCGATTGGCTGAGC
65 GCACGA-AGAGGGGGACT-GGGCCAATCCCCGGCTTGTGCATTCTGCCTCTTCG-GTGGCTGAGT
* *
33508017 ACCCGCACGCCCGTTTCATGGATTGGCTTAG
127 ACCCGCACGCTCGTTTCATGGGTTGGCTTAG
** * * ** * * * * *
33508048 TTATAGGGAGTTCATTCCATGTCTAAGGCCCAG-CCGGATCGAGGGTTGTGGCAGCGGGA-CAGG
1 GCATATGGAGTTCATTCTA-GTCTAA-GATCAGATCGGACCGAGGGTTGCGGCAGCAGGATC-GA
* * * * * * * *
33508111 CAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCAG-ATTATGCTTCTCCGGTCGGCTCAG
63 CAGCACGAAGAGGGGGACTGGGCCAATCCCCGGCTTG-TGCATTCTGCCTCTTCGGT-GGCTGAG
* * *
33508175 TGCCCGCACACTCGTTTCATGGGTTGACTTAG
126 TACCCGCACGCTCGTTTCATGGGTTGGCTTAG
* *
33508207 GCATACGGAGTTCATTCGTAGTCTAAGATCAGATCGGACCAAGGGTTGCGGCAGCAGGATCGACA
1 GCATATGGAGTTCATTC-TAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGACA
* * **
33508272 GCACGAAGGGGGGGACTGGGCCAATCCACGGCTTGTGCATTCTGCCTCTTCGGCTGAATGAGTAC
65 GCACGAAGAGGGGGACTGGGCCAATCCCCGGCTTGTGCATTCTGCCTCTTCGG-TGGCTGAGTAC
* *
33508337 CCGCACGCTCGTTTCGTGGGTTGGCTTAA
129 CCGCACGCTCGTTTCATGGGTTGGCTTAG
* *
33508366 GCATATAGAGTTCATTCCATGTCTAAG
1 GCATATGGAGTTCATTCTA-GTCTAAG
33508393 CATACGAAGG
Statistics
Matches: 266, Mismatches: 65, Indels: 27
0.74 0.18 0.08
Matches are distributed among these distances:
157 3 0.01
158 53 0.20
159 207 0.78
160 3 0.01
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.23
Consensus pattern (157 bp):
GCATATGGAGTTCATTCTAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGACAG
CACGAAGAGGGGGACTGGGCCAATCCCCGGCTTGTGCATTCTGCCTCTTCGGTGGCTGAGTACCC
GCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:33508889 original size:27 final size:27
Alignment explanation
Indices: 33508837--33508889 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 27
33508827 TCTAAATAAA
* *
33508837 TTTTAAAAAATCCTGAACAGTAAAAAG
1 TTTTAAAAAATCCTGAAAAATAAAAAG
*
33508864 TTTT-AAAAATCGTGAAAAATAGAAAA
1 TTTTAAAAAATCCTGAAAAATA-AAAA
33508890 CGGGCCGTCT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
26 14 0.64
27 8 0.36
ACGTcount: A:0.55, C:0.08, G:0.11, T:0.26
Consensus pattern (27 bp):
TTTTAAAAAATCCTGAAAAATAAAAAG
Found at i:33509637 original size:26 final size:26
Alignment explanation
Indices: 33509585--33509640 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
33509575 TGGGTTGGCT
*
33509585 TAAGCATACAGAGTTCATTCTATGTC
1 TAAGCATACAGAGTTCATTCCATGTC
**
33509611 TAAGCATATGGAGTTCATTCCCA-GTC
1 TAAGCATACAGAGTTCATT-CCATGTC
33509637 TAAG
1 TAAG
33509641 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.20, G:0.18, T:0.32
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATTCCATGTC
Found at i:33510343 original size:159 final size:158
Alignment explanation
Indices: 33509982--33510363 Score: 383
Period size: 159 Copynumber: 2.4 Consensus size: 158
33509972 CCCAGACTAA
* * * * * *
33509982 GCATACGGAGTTCAATCCTAGTCTAAGATCAGATCGGATCGAGGGTTGCGGTAGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACA
* * * ** * *
33510047 GCACGCAAGGGGGAATGGGTCGATCCCTGGCTTACGCATTCTGCCTCTCTGATCGGCTGAGTGCC
66 ACACGCAAGGGGGAACGGGCCGATCCCTGGCTTACGCATTAGGCCTCTCTGATCGACTGAGCGCC
* * *
33510112 CGCATGCCCGTTTTGTGGGTTGGCGTAG
131 CGCATGCCCATTTCGTGGGTTGACGTAG
* * ** * * * *
33510140 GCATAGGGAGTTCATT-CCATGTCGAAGCCCCAG-CTGGACCGAGGGTTGTGGCAGCGGGATCGG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGA
* * *
33510203 CAACACGCAGAGGGGGACCGGGCCGATCCCTGGCTTACGCATTAGGCCTCT-TCGGTCGACTTAG
64 CAACACGCA-AGGGGGAACGGGCCGATCCCTGGCTTACGCATTAGGCCTCTCT-GATCGACTGAG
* * * *
33510267 CGCCCGTATGCTCATTTCGTGGGTTGACTTAT
127 CGCCCGCATGCCCATTTCGTGGGTTGACGTAG
** * * *
33510299 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTACGGCAGTAAGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACA
33510364 GCTTATGCAT
Statistics
Matches: 174, Mismatches: 44, Indels: 11
0.76 0.19 0.05
Matches are distributed among these distances:
157 2 0.01
158 54 0.31
159 115 0.66
160 3 0.02
ACGTcount: A:0.21, C:0.25, G:0.31, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACA
ACACGCAAGGGGGAACGGGCCGATCCCTGGCTTACGCATTAGGCCTCTCTGATCGACTGAGCGCC
CGCATGCCCATTTCGTGGGTTGACGTAG
Found at i:33510461 original size:26 final size:26
Alignment explanation
Indices: 33510425--33510477 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33510415 GTTGGCTTAG
*
33510425 GCATACGGAGTTGATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
33510451 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
33510477 G
1 G
33510478 ATTTTAAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:33511696 original size:26 final size:26
Alignment explanation
Indices: 33511644--33511699 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
33511634 TGGGTTGGCT
*
33511644 TAAGCATACGGAGTTCATTCTACGTC
1 TAAGCATACGGAGTTCATTCCACGTC
33511670 TAAGCATACGGAGTTCATTCC-CAGTC
1 TAAGCATACGGAGTTCATTCCAC-GTC
33511696 TAAG
1 TAAG
33511700 ATCGGATCGG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
25 1 0.04
26 27 0.96
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.29
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCACGTC
Found at i:33512401 original size:159 final size:157
Alignment explanation
Indices: 33512041--33512421 Score: 372
Period size: 159 Copynumber: 2.4 Consensus size: 157
33512031 CCCAGACTAA
* * * * * *
33512041 GCATACGGAGTTCAATCCTAGTCTAAGATCAGATCGGATCGAGGGTTGCGGTAGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACA
* * * ** *
33512106 CCACGCAGGGGGAATAGGTCGATCCCTGGCTTACGCATTCTGCCTCTCTAACCGGCTGAGCGCCC
66 ACACGCAGGGGGAACAGGCCGATCCCTGGCTTACGCATTAGGCCTCTCTAACCGACTGAGCGCCC
* *
33512171 GTACGCCCGTTTCGTGGGTTGGCGTAG
131 GTACGCCCATTTCGTGGGTTGACGTAG
* * ** * * * *
33512198 GCATAGGGAGTTCATT-CCATGTCGAAGCCCCAG-CTGGACCGAGGGTTGTGGCAGCGGGATCGG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGA
* * *** *
33512261 CAACACGCAGAGGGGGACCGGGCCGATCCCTGGCTTACGCATTAGGCCTCT-TCGGTCGACTTAG
64 CAACACGC--AGGGGGAACAGGCCGATCCCTGGCTTACGCATTAGGCCTCTCT-AACCGACTGAG
* * * *
33512325 CGCCCGTATGCTCATTTCGTGGGTTGACTTAT
126 CGCCCGTACGCCCATTTCGTGGGTTGACGTAG
** * *
33512357 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTACGGCAGCAAGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACA
33512422 GCTTGTGCAT
Statistics
Matches: 173, Mismatches: 44, Indels: 12
0.76 0.19 0.05
Matches are distributed among these distances:
156 2 0.01
157 49 0.28
158 7 0.04
159 112 0.65
160 3 0.02
ACGTcount: A:0.21, C:0.27, G:0.31, T:0.22
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACA
ACACGCAGGGGGAACAGGCCGATCCCTGGCTTACGCATTAGGCCTCTCTAACCGACTGAGCGCCC
GTACGCCCATTTCGTGGGTTGACGTAG
Found at i:33512519 original size:26 final size:26
Alignment explanation
Indices: 33512483--33512535 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33512473 GTTGGCTTAG
*
33512483 GCATACGGAGTTGATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
33512509 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
33512535 G
1 G
33512536 ATTTTAAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:33514093 original size:26 final size:26
Alignment explanation
Indices: 33514057--33514109 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
33514047 GTTGACTTAG
* *
33514057 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
33514083 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
33514109 G
1 G
33514110 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:33514549 original size:158 final size:157
Alignment explanation
Indices: 33514083--33514584 Score: 465
Period size: 158 Copynumber: 3.2 Consensus size: 157
33514073 CCCAGTCTAA
* * * * ** *
33514083 GCATACGGAGTTCATTCCCA-ATCTAAGATCAGACCAGACCAAGGGTTGCAGTAGCAAGATCGAC
1 GCATACGAAGTTCATT-CCATGTCTAAGATCAGATCAGACCGAGGGTTGTGGTAGCAGGATCGAC
* * * * *
33514147 AACACGCAGGGGGCATAGGGCCGATCCCCGACTTGCGCATTTTGCCTCTCCGGTCGGCTAAGCGC
65 AACACGCAGGGGGGATCGGGGCGAT-CCCGACTTGCGCATTATGCCTCTCCGGTCGTCTAAGCGC
* * * *
33514212 CTGCATGCCCATTTCGTCGGTTGGCTTAG
129 CTGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * ** * * * * *
33514241 GCATAGGGAGTTCATTCCATGTCTAAG-CCCCATCCGGATCGAGGGTTATGGTAGTAGGATCGGC
1 GCATACGAAGTTCATTCCATGTCTAAGATCAGAT-CAGACCGAGGGTTGTGGTAGCAGGATCGAC
* * * * * ** *
33514305 AGCACGCAGAGGGGGATC-GAGCTGATCTCCGACTTGCGCTTTATGCCTTTTCGCCCGGT-TCAG
65 AACACGCAG-GGGGGATCGGGGC-GATC-CCGACTTGCGCATTATGCCTCTCCGGTC-GTCTAAG
* * ** *
33514368 CACCCGCACGCTCGTTTCGTGGGTTAACTTAT
126 CGCCTGCACGCTCGTTTCGTGGGTTGGCTTAG
* * *
33514400 GCATACGAAGTTCATTCCCA-GTCTAAGATCGGATCAGACCGAGGGTTGTGGCAGCAGGATTGAC
1 GCATACGAAGTTCATT-CCATGTCTAAGATCAGATCAGACCGAGGGTTGTGGTAGCAGGATCGAC
* * * * *
33514464 AACACGTAGGGGGGATCGGGGCGATCCCTGGCTTGCGCATTCTACCTCTCCGGTCATCTAAGCGC
65 AACACGCAGGGGGGATCGGGGCGATCCC-GACTTGCGCATTATGCCTCTCCGGTCGTCTAAGCGC
33514529 CTGCACGCTCGTTTCGTGGGTTGGCTTAG
129 CTGCACGCTCGTTTCGTGGGTTGGCTTAG
33514558 GCATACGAAGTTCATTCCATGTCTAAG
1 GCATACGAAGTTCATTCCATGTCTAAG
33514585 CATATGGAGT
Statistics
Matches: 265, Mismatches: 67, Indels: 24
0.74 0.19 0.07
Matches are distributed among these distances:
157 11 0.04
158 136 0.51
159 111 0.42
160 7 0.03
ACGTcount: A:0.20, C:0.27, G:0.28, T:0.24
Consensus pattern (157 bp):
GCATACGAAGTTCATTCCATGTCTAAGATCAGATCAGACCGAGGGTTGTGGTAGCAGGATCGACA
ACACGCAGGGGGGATCGGGGCGATCCCGACTTGCGCATTATGCCTCTCCGGTCGTCTAAGCGCCT
GCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:33515583 original size:159 final size:158
Alignment explanation
Indices: 33515325--33516107 Score: 711
Period size: 159 Copynumber: 4.9 Consensus size: 158
33515315 GATCGAACCG
* * * * * * * * *
33515325 GACCGAGGGTTGCGACCGCAGGATCGACAGCATGCAG--GGGGATCAGACCGGTCCCCTGCTTGC
1 GACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAAGGGGATCGGACCGATCCCCGGCTTGC
* * * * *
33515388 GCATTCTGCCTCTCCGGCAGGCTGAGCACCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGG
66 GCATTCTGCCTCTTC-GCTGGCTCAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGG
* * * *
33515453 GAGTTCATTTCGTGTCTAAGCCCCAGTCG
130 GAGTTCATTCCATGTCTAAGCCCTAGTCA
** * *
33515482 GACCGAGGGTTGTGATAGTGGGACCGACAGCACGCAGAAGGGGATCGGACCGATCCCCGACTTGC
1 GACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAAGGGGATCGGACCGATCCCCGGCTTGC
* * * * * *
33515547 GCATTATGCCTCTTCGACTGGCTCAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACG
66 GCATTCTGCCTCTTCG-CTGGCTCAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGG
* **
33515612 AAGTTCATTCCCA-GTCTAAG-ATTAGATCA
130 GAGTTCATT-CCATGTCTAAGCCCTAG-TCA
** * ** * * * *
33515641 GATTGAGGGTTGCGGCAGCATGATCGACAGCACGCAG-GGGGGA-CTGAGCCGATCCCCGGCTTA
1 GACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAAGGGGATCGGA-CCGATCCCCGGCTTG
* * * * * *
33515704 CGCATTCTGCCTCTTCGGTCGGCTAAGCGCTCGTACGTCTGTTTCGTGGGTTGGCTTAGGCATAG
65 CGCATTCTGCCTCTTCGCT-GGCTCAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAG
*
33515769 GGAGTTCATTCCATGTCTAAGCCCTAGCCA
129 GGAGTTCATTCCATGTCTAAGCCCTAGTCA
* * ** * * * * * *
33515799 GACCGAGGGTTGTGGCAGTGGGATCGGTAGCTCACAGAAGGGGAACGGGCTGATCCTCGGCTTGC
1 GACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAAGGGGATCGGACCGATCCCCGGCTTGC
* * * * * *
33515864 ACATTCTGCCT-TTCTGGTCGACTGAGCGCCCGCCCGCCCGTTTCGTGGTTTGGCTTAGGCATAG
66 GCATTCTGCCTCTTC-GCT-GGCTCAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAG
33515928 GGAGTTCATTCCATGTCTAAGCCCTAGTCA
129 GGAGTTCATTCCATGTCTAAGCCCTAGTCA
* * ** * * **
33515958 GACTGAGGGTTGTGGCAGCGAGACCGGTAGCATGCAGAAGGGGACCGGGTCGATCCCCGGCTTGC
1 GACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAAGGGGATCGGACCGATCCCCGGCTTGC
* * * * * *
33516023 G-ATTATGCCTCTTCGGCTGGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTATGCATATG
66 GCATTCTGCCTCTTC-GCTGGCTCAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGG
*
33516087 GAGTTCATCCCCA-GTCTAAGC
130 GAGTTCAT-TCCATGTCTAAGC
33516108 ATACAGAGTT
Statistics
Matches: 503, Mismatches: 109, Indels: 27
0.79 0.17 0.04
Matches are distributed among these distances:
157 37 0.07
158 181 0.36
159 282 0.56
160 3 0.01
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.24
Consensus pattern (158 bp):
GACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAAGGGGATCGGACCGATCCCCGGCTTGC
GCATTCTGCCTCTTCGCTGGCTCAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGG
AGTTCATTCCATGTCTAAGCCCTAGTCA
Found at i:33515908 original size:317 final size:315
Alignment explanation
Indices: 33515329--33516107 Score: 802
Period size: 317 Copynumber: 2.5 Consensus size: 315
33515319 GAACCGGACC
* * * * *
33515329 GAGGGTTGCGACCGCAGGATCGACAGCATGCA-GGGGGA-TCAGACCGGTCCCCTGCTTGCGCAT
1 GAGGGTTGCGGCAGCA-GATCGACAGCATGCAGGGGGGACTGAG-CCGATCCCCGGCTTGCGCAT
* * * **
33515392 TCTGCCTCTCCGGCAGGCTGAGCACCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGT
64 TCTGCCTCTTCGGCAGGCTAAGCGCCCGCACG-CTGTTTCGTGGGTTGGCTTAGGCATAGGGAGT
* * * * * *
33515457 TCATTTCGTGTCTAAGCCCCAGTCGGACCGAGGGTTGTGATAGTGGGACCGACAGCACGCAGAAG
128 TCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGACAGTGGGACCGACAGCACACAGAAG
* * * * *
33515522 GGGATCGGACCGATCCCCGACTTGCGCATTATGCCTCTTCGACTGGCTCAGTGCCCGCACGCTCG
193 GGGAACGGACCGATCCCCGACTTGCACATTATGCCTCTTCGACTGACTCAGCGCCCGCACGCCCG
* * *
33515587 TTTCGTGGGTTGACTTATGCATACGAAGTTCATTCCCA-GTCTAAG-ATTAGATCAGATT
258 TTTCGTGGGTTGACTTAGGCATACGAAGTTCATT-CCATGTCTAAGCACTAG-TCAGACT
* *
33515645 GAGGGTTGCGGCAGCATGATCGACAGCACGCAGGGGGGACTGAGCCGATCCCCGGCTTACGCATT
1 GAGGGTTGCGGCAGCA-GATCGACAGCATGCAGGGGGGACTGAGCCGATCCCCGGCTTGCGCATT
* *
33515710 CTGCCTCTTCGGTC-GGCTAAGCGCTCGTACGTCTGTTTCGTGGGTTGGCTTAGGCATAGGGAGT
65 CTGCCTCTTCGG-CAGGCTAAGCGCCCGCACG-CTGTTTCGTGGGTTGGCTTAGGCATAGGGAGT
* * * ** *
33515774 TCATTCCATGTCTAAGCCCTAGCCAGACCGAGGGTTGTGGCAGTGGGATCGGTAGCTCACAGAAG
128 TCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGACAGTGGGACCGACAGCACACAGAAG
* * * * * * * *
33515839 GGGAACGGGCTGATCCTCGGCTTGCACATTCTGCCT-TTCTG-GTCGACTGAGCGCCCGCCCGCC
193 GGGAACGGACCGATCCCCGACTTGCACATTATGCCTCTTC-GACT-GACTCAGCGCCCGCACGCC
* * * * *
33515902 CGTTTCGTGGTTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGTCAGACT
256 CGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCATGTCTAAGCACTAGTCAGACT
* * ** * * * *
33515962 GAGGGTTGTGGCAGCGAGACCGGTAGCATGCAGAAGGGGACCGGGTCGATCCCCGGCTTGCG-AT
1 GAGGGTTGCGGCAGC-AGATCGACAGCATGCAG-GGGGGACTGAGCCGATCCCCGGCTTGCGCAT
* * * * * * *
33516026 TATGCCTCTTCGGCTGGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTATGCATATGGAGT
64 TCTGCCTCTTCGGCAGGCTAAGCGCCCGCACGCT-GTTTCGTGGGTTGGCTTAGGCATAGGGAGT
*
33516091 TCATCCCCA-GTCTAAGC
128 TCAT-TCCATGTCTAAGC
33516108 ATACAGAGTT
Statistics
Matches: 383, Mismatches: 68, Indels: 23
0.81 0.14 0.05
Matches are distributed among these distances:
316 38 0.10
317 311 0.81
318 34 0.09
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.24
Consensus pattern (315 bp):
GAGGGTTGCGGCAGCAGATCGACAGCATGCAGGGGGGACTGAGCCGATCCCCGGCTTGCGCATTC
TGCCTCTTCGGCAGGCTAAGCGCCCGCACGCTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCA
TTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGACAGTGGGACCGACAGCACACAGAAGGGG
AACGGACCGATCCCCGACTTGCACATTATGCCTCTTCGACTGACTCAGCGCCCGCACGCCCGTTT
CGTGGGTTGACTTAGGCATACGAAGTTCATTCCATGTCTAAGCACTAGTCAGACT
Found at i:33517018 original size:26 final size:26
Alignment explanation
Indices: 33516988--33517040 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
33516978 GTTGACTTAG
33516988 GCATACAG-AGTTCA-TCCCTAGTCTAA
1 GCATA-AGAAGTTCATTCCC-AGTCTAA
*
33517014 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATAAGAAGTTCATTCCCAGTCTAA
33517040 G
1 G
33517041 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 1 0.04
26 19 0.79
27 4 0.17
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATAAGAAGTTCATTCCCAGTCTAA
Found at i:33517351 original size:26 final size:26
Alignment explanation
Indices: 33517321--33517371 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
33517311 GTGTTGACTT
33517321 AAGCACACAGAGTTCATTCCCAGTCA
1 AAGCACACAGAGTTCATTCCCAGTCA
*
33517347 AAGCATACAGAGTTCATTCCCAGTC
1 AAGCACACAGAGTTCATTCCCAGTC
33517372 TAAGATTGGA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.33, C:0.29, G:0.16, T:0.22
Consensus pattern (26 bp):
AAGCACACAGAGTTCATTCCCAGTCA
Found at i:33517851 original size:26 final size:26
Alignment explanation
Indices: 33517822--33517874 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33517812 GTTGGTTGAG
*
33517822 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
33517848 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
33517874 G
1 G
33517875 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Done.