Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 367 of 402
Found at i:33517986 original size:183 final size:182
Alignment explanation
Indices: 33517667--33518032 Score: 463
Period size: 183 Copynumber: 2.0 Consensus size: 182
33517657 TTGACTTAGA
* * *
33517667 CATACGAGTTCATTCCCAGTCTAAGATCAGAGTGGATCGAGGGTTGCGACTGCAAGATCGACAGC
1 CATACGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGACAGCAAGATCGACAGC
* * * *
33517732 GCACAGGGGGGATCGGGTCGATCTCGAATTACGTATTCTGCCTCTCCAGCTGGCTAAATGCCCGA
66 ACACAGAGGGGATCGGGTCGATCTCGAATTACGCATTCTACCTCTCCAGCTGGCTAAATGCCCGA
*
33517797 ACACTCGTTCCGTGGGTTGG-TTGAGGCATACGGAGTTCATTCCATGTCTAAG
131 ACACTCGTTCCGTGGGTTGGCTT-AGGCATACGGAGTTCATTCCATATCTAAG
* * * *
33517849 CATACAGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCTACAGTAGGATCTG-CA
1 CATAC-GAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGACAGCAAGATC-GACA
* ** * *
33517913 GCACGCAGAGGGGATCGGG-CTGATCTC-AACTTACGCATTCTACCTCT-TTGGTCGGCTCAATG
64 GCACACAGAGGGGATCGGGTC-GATCTCGAA-TTACGCATTCTACCTCTCCAGCT-GGCTAAATG
* * *
33517975 CCCGTACACTCGTTTCTTGGGTTGGCTTAGGCATACGGAGTTCATTCCATATCTAAG
126 CCCGAACACTCGTTCCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATATCTAAG
33518032 C
1 C
33518033 CCCAGCCAGA
Statistics
Matches: 158, Mismatches: 20, Indels: 11
0.84 0.11 0.06
Matches are distributed among these distances:
182 10 0.06
183 145 0.92
184 3 0.02
ACGTcount: A:0.22, C:0.25, G:0.27, T:0.26
Consensus pattern (182 bp):
CATACGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGACAGCAAGATCGACAGC
ACACAGAGGGGATCGGGTCGATCTCGAATTACGCATTCTACCTCTCCAGCTGGCTAAATGCCCGA
ACACTCGTTCCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATATCTAAG
Found at i:33518542 original size:26 final size:26
Alignment explanation
Indices: 33518512--33518563 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
33518502 GTTGGCTTAG
*
33518512 GCATACGGAGTTCATTC-CATGTCTAA
1 GCATACGAAGTTCATTCTCA-GTCTAA
33518538 GCATACGAAGTTCATTCTCAGTCTAA
1 GCATACGAAGTTCATTCTCAGTCTAA
33518564 TATTTTAAGG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (26 bp):
GCATACGAAGTTCATTCTCAGTCTAA
Found at i:33525182 original size:26 final size:26
Alignment explanation
Indices: 33525153--33525205 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
33525143 GTTGACTTAG
33525153 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
33525179 GCATATGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
33525205 G
1 G
33525206 ATCTAACCAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:33525539 original size:26 final size:26
Alignment explanation
Indices: 33525509--33525561 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
33525499 GTTGACTTAG
*
33525509 GCATACTGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
33525535 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
33525561 G
1 G
33525562 ATAGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:33526194 original size:26 final size:26
Alignment explanation
Indices: 33526165--33526217 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
33526155 GTTGACTTAG
33526165 GCATACGAAATTCATCCCCAGTCTAA
1 GCATACGAAATTCATCCCCAGTCTAA
* * * *
33526191 GCATACGGAGTTGATGCCCAGTCTAA
1 GCATACGAAATTCATCCCCAGTCTAA
33526217 G
1 G
33526218 ATCAAACAGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.26, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACGAAATTCATCCCCAGTCTAA
Found at i:33526717 original size:26 final size:26
Alignment explanation
Indices: 33526687--33526739 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
33526677 GTTAACTTAG
*
33526687 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
33526713 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
33526739 G
1 G
33526740 ATCGGGCTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:33528312 original size:26 final size:26
Alignment explanation
Indices: 33528283--33528335 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
33528273 GTTAACTTAG
33528283 GCAT-ACGAAGTTCATCCCCAGTCTAA
1 GCATAACGAA-TTCATCCCCAGTCTAA
* *
33528309 GCATAAGGAATTCATTCCCAGTCTAA
1 GCATAACGAATTCATCCCCAGTCTAA
33528335 G
1 G
33528336 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATAACGAATTCATCCCCAGTCTAA
Found at i:33528969 original size:159 final size:157
Alignment explanation
Indices: 33528803--33529167 Score: 399
Period size: 158 Copynumber: 2.3 Consensus size: 157
33528793 CTCGCACGTC
* * * *
33528803 CGTTTCATGGATTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAAACCGAGGG
1 CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCC-TGTCTAAGCCCCAATCAAACCAAGGG
* * *
33528868 TTATGGCAGCGGGATCGGTAGCACGCAGAGGGGGACC-GGGCTGATCCCCGGCTTACGCATTATG
65 TTATGGCAGCAGGATCGATAGCACGCAG-GGGGGACCAGGTC-GATCCCCGGCTTACGCATTATG
* ** * *
33528932 CCTCTTTGATCGGCTCAACGCCCGTACACT
128 CCTCTTCGATCCACTAAACGCCCGCACACT
* * * * ** * **
33528962 CGTTTCATGGGTTGACTTATGCATACGAAGTTCATTCCTAGTGTAAGATCGAATCGGACCAAGGG
1 CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCT-GTCTAAGCCCCAATCAAACCAAGGG
* * * * *
33529027 TTATGGTAGCAGGATTGATAGCACGCAGGGGGGACCAGGTCGATCCTCGGCTTGCGCATTCTGCC
65 TTATGGCAGCAGGATCGATAGCACGCAGGGGGGACCAGGTCGATCCCCGGCTTACGCATTATGCC
* * *
33529092 TCTTCGGTCCACTAAATGCCCGCACGCT
130 TCTTCGATCCACTAAACGCCCGCACACT
* *
33529120 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCTTATCTAAGC
1 CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCC-TGTCTAAGC
33529168 ATTCAGAGTT
Statistics
Matches: 167, Mismatches: 36, Indels: 7
0.80 0.17 0.03
Matches are distributed among these distances:
158 89 0.53
159 78 0.47
ACGTcount: A:0.20, C:0.25, G:0.28, T:0.26
Consensus pattern (157 bp):
CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCTGTCTAAGCCCCAATCAAACCAAGGGT
TATGGCAGCAGGATCGATAGCACGCAGGGGGGACCAGGTCGATCCCCGGCTTACGCATTATGCCT
CTTCGATCCACTAAACGCCCGCACACT
Found at i:33529124 original size:158 final size:159
Alignment explanation
Indices: 33528729--33529166 Score: 461
Period size: 159 Copynumber: 2.8 Consensus size: 159
33528719 TAGGGTCAGC
* * * * * * *
33528729 AGCACACAGGGGGGAGCAGACCGATCCCCGCCTTGCGCATCCTACCTCTTCGGTCGGCTAAGCGC
1 AGCACGCAGGGGGGACCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGTCGGCTAAACGC
* * * * *
33528794 TCGCACG-TCCGTTTCATGGATTGGCTTAGGCATAGGGAGTTCATTCC-ATGTCTAAGCCCCAGT
66 CCGCACGCT-CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCTATGTCTAAGACCCAAT
* * *
33528857 CAAACCGAGGGTTATGGCAGCGGGATCGGT
130 CAAACCAAGGGTTATGGCAGCAGGATCGAT
* * * * * * *
33528887 AGCACGCAGAGGGGGACCGGGCTGATCCCCGGCTTACGCATTATGCCTCTTTGATCGGCTCAACG
1 AGCACGCAG-GGGGGACCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGTCGGCTAAACG
* * * * * * * *
33528952 CCCGTACACTCGTTTCATGGGTTGACTTATGCATACGAAGTTCATTCCTA-GTGTAAGATCGAAT
65 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCTATGTCTAAGACCCAAT
** * *
33529016 CGGACCAAGGGTTATGGTAGCAGGATTGAT
130 CAAACCAAGGGTTATGGCAGCAGGATCGAT
* * ** *
33529046 AGCACGCAGGGGGGACCAGGTCGATCCTCGGCTTGCGCATTCTGCCTCTTCGGTCCACTAAATGC
1 AGCACGCAGGGGGGACCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGTCGGCTAAACGC
* *
33529111 CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCT-TATCTAAG
66 CCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCTATGTCTAAG
33529167 CATTCAGAGT
Statistics
Matches: 222, Mismatches: 54, Indels: 8
0.78 0.19 0.03
Matches are distributed among these distances:
158 99 0.45
159 121 0.55
160 2 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (159 bp):
AGCACGCAGGGGGGACCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGTCGGCTAAACGC
CCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCTATGTCTAAGACCCAATC
AAACCAAGGGTTATGGCAGCAGGATCGAT
Found at i:33530921 original size:26 final size:26
Alignment explanation
Indices: 33530892--33530942 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
33530882 TGGCATAGGT
33530892 ATACGGAGTTCATT-CCATGTCTAAGC
1 ATACGGAGTTCATTCCCA-GTCTAAGC
33530918 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
33530943 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:33532355 original size:26 final size:26
Alignment explanation
Indices: 33532305--33532357 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
33532295 GTTGGCTTAG
***
33532305 GCATACAGAGTTCATTCCGTGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
*
33532331 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
33532357 G
1 G
33532358 ATCGAACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:33532843 original size:353 final size:354
Alignment explanation
Indices: 33532253--33532894 Score: 910
Period size: 353 Copynumber: 1.8 Consensus size: 354
33532243 TTACGGATTC
* * ** * * * *
33532253 TGCCTCTCCGATTGATTGAGCACCCGTACGCTCATTTTGTGGGTTGGCTTAGGCATACAGAGTTC
1 TGCCTCTCCGACTGACTGAGCACCCACACGCTCATTTCGTGGATTGACTTAGGCACACAGAGTTC
* ** * *
33532318 ATTCCGTGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGAACCAGATCGAGGGTTGCGGC
66 ATCCCCAGTCTAAGCATACGAAGTTCATTCCCAATCTAAGATCGAACCAGATCGAGGGTTGCGAC
* * * * *
33532383 AGTAGGATAGGCAGCACGTAGGAGGGACCGGGTCGATCCTCGGCTTACGCATTCTGCCTCTTCGG
131 AGCAGGATAGGCAGCACGTAGGAGGGACCGGGCCGATCCCCGGCTTACGCATTCCGCCTCTTCAG
* ** * * * *
33532448 TCAGCTGAGCACTTGCACGCTCATTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCT
196 CCAGCTGAGCACCCGCACACCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGCCT
33532513 AAGCCCCAGTCGGACCGAGGGTTGTGGCAACAGGACCGGCAGCGGGATCGGTAGCATGCAGAGGG
261 AAGCCCCAGTCGGACCGAGGGTTGTGGCAACAGGACCGGCAGCGGGATCGGTAGCATGCAGAGGG
33532578 GGACCGAGTTGATCCCCGGTTGCACATTA
326 GGACCGAGTTGATCCCCGGTTGCACATTA
* *
33532607 TGCCTCTCCGACTGGCTGAGCACCCACATGCTCATTTCGTGGATTGACTTAGGCACACAGAGTTC
1 TGCCTCTCCGACTGACTGAGCACCCACACGCTCATTTCGTGGATTGACTTAGGCACACAGAGTTC
* * * *
33532672 ATCCCCAGTCTAAGCATACGAAGTTCATT-CCAGTCTAAGATCGGATCGGATCGAGGGTTGCGAC
66 ATCCCCAGTCTAAGCATACGAAGTTCATTCCCAATCTAAGATCGAACCAGATCGAGGGTTGCGAC
* * * *
33532736 AGCAGGATCGGTAGCACGTAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCCGCCTC-TCTA
131 AGCAGGATAGGCAGCACGTAGGAGGGACCGGGCCGATCCCCGGCTTACGCATTCCGCCTCTTC-A
* * * *
33532800 GCCGGTTGAGCGCCCGCACACCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGCC
195 GCCAGCTGAGCACCCGCACACCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGCC
33532865 TAAGCCCCAGTCGGACCGAGGGTTGTGGCA
260 TAAGCCCCAGTCGGACCGAGGGTTGTGGCA
33532895 GCGGGATCGG
Statistics
Matches: 248, Mismatches: 39, Indels: 3
0.86 0.13 0.01
Matches are distributed among these distances:
352 2 0.01
353 166 0.67
354 80 0.32
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (354 bp):
TGCCTCTCCGACTGACTGAGCACCCACACGCTCATTTCGTGGATTGACTTAGGCACACAGAGTTC
ATCCCCAGTCTAAGCATACGAAGTTCATTCCCAATCTAAGATCGAACCAGATCGAGGGTTGCGAC
AGCAGGATAGGCAGCACGTAGGAGGGACCGGGCCGATCCCCGGCTTACGCATTCCGCCTCTTCAG
CCAGCTGAGCACCCGCACACCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGCCT
AAGCCCCAGTCGGACCGAGGGTTGTGGCAACAGGACCGGCAGCGGGATCGGTAGCATGCAGAGGG
GGACCGAGTTGATCCCCGGTTGCACATTA
Found at i:33533911 original size:26 final size:26
Alignment explanation
Indices: 33533881--33533933 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33533871 GTTGACTTAG
*
33533881 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATAAGGAGTTCATTCCC-AGTCTAA
33533907 GCATAAGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAGTCTAA
33533933 G
1 G
33533934 ATTGAACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCCAGTCTAA
Found at i:33539488 original size:26 final size:26
Alignment explanation
Indices: 33539459--33539512 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
33539449 GGTTGACTTT
* *
33539459 AGCATATGGAGTTCATGCCTAGTCTA
1 AGCATACGGAGTTCATGCCCAGTCTA
*
33539485 AGCATACGGAGTTCATTCCCAGTCTA
1 AGCATACGGAGTTCATGCCCAGTCTA
33539511 AG
1 AG
33539513 ATCGGCTCGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (26 bp):
AGCATACGGAGTTCATGCCCAGTCTA
Found at i:33540528 original size:26 final size:26
Alignment explanation
Indices: 33540491--33540543 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
33540481 GTTGGCTTAG
33540491 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
33540517 GCATAC-GTAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
33540543 G
1 G
33540544 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 1 0.04
26 21 0.84
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:33541618 original size:26 final size:26
Alignment explanation
Indices: 33541589--33541641 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
33541579 GTTGACTTAG
33541589 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
33541615 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
33541641 G
1 G
33541642 ATTAGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:33542131 original size:26 final size:26
Alignment explanation
Indices: 33542102--33542154 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
33542092 GTTGACTTAG
33542102 GCATACAGAGTTCAACCCCAGTCTAA
1 GCATACAGAGTTCAACCCCAGTCTAA
**
33542128 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCAACCCCAGTCTAA
33542154 G
1 G
33542155 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.28, G:0.17, T:0.23
Consensus pattern (26 bp):
GCATACAGAGTTCAACCCCAGTCTAA
Found at i:33543808 original size:157 final size:158
Alignment explanation
Indices: 33543351--33544165 Score: 597
Period size: 159 Copynumber: 5.2 Consensus size: 158
33543341 CCTAGTCTAA
* * * * * * *
33543351 GCATATGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGTGGCAGCAGGATCGGCA
1 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGAGGTAGCAGGATCGACA
* * * * * *
33543416 GCACGC--AGGGGGACCGGGTCGATCCCCGACTTGCGCATTCTGCCTCT-CGGATC-GATTGAGC
66 GCATGCAGAGGGGGACTGGGTTGAT-CCCGACTTGCGCATTATGCCTCTCCGG-TCAG-CTCAGC
** *
33543477 GCCCGGACGCCCGTTTCGTGGGTTGGCTTAG
128 GCCCACACGCCCGTTTCATGGGTTGGCTTAG
* ** * * * * *
33543508 GCATAGGGAGTTCATTCC-ATGTCTAAGCCCCAG-CCGAACCGAGGGTTGTGGCAGCGGGA-CCA
1 GCATACGGAGTTCATTCCTA-GTCTAAG-ATCAGACCGGACCGAGGGTTGAGGTAGCAGGATCGA
* * * ***** * * *
33543570 GCAACACGCAGAGGGGGACCGACCCAATCCTGGGCTTGCGCATTATGCCTCTCCGGCCAGCTCAG
64 -CAGCATGCAGAGGGGGACTGGGTTGATCC-CGACTTGCGCATTATGCCTCTCCGGTCAGCTCAG
** * *
33543635 CGCCCGTACGCTCGTTTCATGGGTTAGCTTAG
127 CGCCCACACGCCCGTTTCATGGGTTGGCTTAG
* * * * * *
33543667 GCATACAGAGTTCATTCCCAGTCTATGATCAGACTGGA-CGAGGGTTGAGGTAGCAGGATTGATA
1 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGAGGTAGCAGGATCGACA
* * * * *
33543731 GCACGCAG-GGGGGACTGGGTTGGTCCACGACTTGCGCATTCTGCCTCTCCAGTCAGCTGAGCGC
66 GCATGCAGAGGGGGACTGGGTTGATCC-CGACTTGCGCATTATGCCTCTCCGGTCAGCTCAGCGC
*
33543795 CCACACGCCCGTTTCGTGGGTTGGCTTAG
130 CCACACGCCCGTTTCATGGGTTGGCTTAG
* * ** * ** * *
33543824 CCATAGGGAGTTCATTATTTGTCTAAGGCCCAG-CCGGACCGATGGTT-ATGGCTA-CGGGATCG
1 GCATACGGAGTTCATTCCTAGTCTAA-GATCAGACCGGACCGAGGGTTGA-GG-TAGCAGGATCG
* * * * *
33543886 ACAGCATGCAGAGGGGGACCGGGTTGATCTCC-AGCTTGTGCATTATGCCTCTTCGATCGGCTCA
63 ACAGCATGCAGAGGGGGACTGGGTTGATC-CCGA-CTTGCGCATTATGCCTCTCCGGTCAGCTCA
* * * **
33543950 GTGCCCACACAG-CCATTTCGTGGGTTGATTTAG
126 GCGCCCACAC-GCCCGTTTCATGGGTTGGCTTAG
* * * *
33543983 GCATACGGAGTTCATTCCTAGTCTAAGATC-GAACCAGATCGAGGGTTGCGGTAGCAGGATCAAC
1 GCATACGGAGTTCATTCCTAGTCTAAGATCAG-ACCGGACCGAGGGTTGAGGTAGCAGGATCGAC
* * * * *
33544047 AGCATGC-GAGGGGGACTGGG-CGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTC-GATGAGCG
65 AGCATGCAGAGGGGGACTGGGTTGAT-CCCGACTTGCGCATTATGCCTCTCCGGTCAGCTCAGCG
** *
33544109 ATCACACGCTCGTTTCATGGGTTGGCTTAG
129 CCCACACGCCCGTTTCATGGGTTGGCTTAG
*
33544139 GCATACGGCGTTCATTCC-ATGTCTAAG
1 GCATACGGAGTTCATTCCTA-GTCTAAG
33544166 CATACGGAGT
Statistics
Matches: 514, Mismatches: 117, Indels: 55
0.75 0.17 0.08
Matches are distributed among these distances:
155 2 0.00
156 52 0.10
157 168 0.33
158 79 0.15
159 206 0.40
160 7 0.01
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGAGGTAGCAGGATCGACA
GCATGCAGAGGGGGACTGGGTTGATCCCGACTTGCGCATTATGCCTCTCCGGTCAGCTCAGCGCC
CACACGCCCGTTTCATGGGTTGGCTTAG
Found at i:33543931 original size:316 final size:316
Alignment explanation
Indices: 33543358--33544166 Score: 904
Period size: 316 Copynumber: 2.6 Consensus size: 316
33543348 TAAGCATATG
* * *
33543358 GAGTTCATTCCCAGTCTAAGATCAGA-TCAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGC
1 GAGTTCATTCCCAGTCTAAGATCAGACT-AGACCGAGGGTTGAGGTAGCAGGATCGACAGCACGC
* **
33543422 A-GGGGGACCGGGTCGATCCCCGACTTGCGCATTCTGCCTCT-CGGATCGATTGAGCGCCCGGAC
65 AGGGGGGACTGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGG-TCGA-TGAGCGCCCACAC
*
33543485 GCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCGA
128 GCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTACATGTCTAAGCCCCAGCCGAACCGA
* **
33543550 GGGTTGTGGCAGCGGGACCAGCAACACGCAGAGGGGGACCGACCCAATCCTGGGCTTGCGCATTA
193 GGGTTATGGCAGCGGGACCAGCAACACGCAGAGGGGGACCGACCCAATCCTCAGCTTGCGCATTA
* ** *
33543615 TGCCTCTCCGGCCAGCTCAGCGCCCGTAC-GCTCGTTTCATGGGTT-AGCTTAGGCATACA
258 TGCCTCTCCGACCAGCTCAGCGCCCACACAGC-CATTTCATGGGTTGA-CTTAGGCATACA
* * * *
33543674 GAGTTCATTCCCAGTCTATGATCAGACTGGA-CGAGGGTTGAGGTAGCAGGATTGATAGCACGCA
1 GAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGAGGTAGCAGGATCGACAGCACGCA
* * * * *
33543738 GGGGGGACTGGGTTGGTCCACGACTTGCGCATTCTGCCTCTCCAGTCAGCTGAGCGCCCACACGC
66 GGGGGGACTGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGGTC-GATGAGCGCCCACACGC
* ** * * *
33543803 CCGTTTCGTGGGTTGGCTTAGCCATAGGGAGTTCATTATTTGTCTAAGGCCCAGCCGGACCGATG
130 CCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTACATGTCTAAGCCCCAGCCGAACCGAGG
* * * ***** *
33543868 GTTATGGCTA-CGGGATC-GACAGCATGCAGAGGGGGACCGGGTTGAT-CTCCAGCTTGTGCATT
195 GTTATGGC-AGCGGGACCAG-CAACACGCAGAGGGGGACCGACCCAATCCT-CAGCTTGCGCATT
* * * * * * *
33543930 ATGCCTCTTCGATCGGCTCAGTGCCCACACAGCCATTTCGTGGGTTGATTTAGGCATACG
257 ATGCCTCTCCGACCAGCTCAGCGCCCACACAGCCATTTCATGGGTTGACTTAGGCATACA
* * * * * *
33543990 GAGTTCATTCCTAGTCTAAGATC-GAACCAGATCGAGGGTTGCGGTAGCAGGATCAACAGCATGC
1 GAGTTCATTCCCAGTCTAAGATCAG-ACTAGACCGAGGGTTGAGGTAGCAGGATCGACAGCACGC
* **
33544054 -GAGGGGGACTGGG-CGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGATGAGCGATCACACG
65 AG-GGGGGACTGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGATGAGCGCCCACACG
* * * * *
33544117 CTCGTTTCATGGGTTGGCTTAGGCATACGGCGTTCATTCCATGTCTAAGC
129 CCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTACATGTCTAAGC
33544167 ATACGGAGTT
Statistics
Matches: 410, Mismatches: 71, Indels: 25
0.81 0.14 0.05
Matches are distributed among these distances:
315 86 0.21
316 278 0.68
317 46 0.11
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (316 bp):
GAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGAGGTAGCAGGATCGACAGCACGCA
GGGGGGACTGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGATGAGCGCCCACACGCC
CGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTACATGTCTAAGCCCCAGCCGAACCGAGGG
TTATGGCAGCGGGACCAGCAACACGCAGAGGGGGACCGACCCAATCCTCAGCTTGCGCATTATGC
CTCTCCGACCAGCTCAGCGCCCACACAGCCATTTCATGGGTTGACTTAGGCATACA
Found at i:33544169 original size:26 final size:26
Alignment explanation
Indices: 33544139--33544191 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
33544129 GTTGGCTTAG
* *
33544139 GCATACGGCGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
* *
33544165 GCATACGGAGTTTATTCCCTATCTAA
1 GCATACGGAGTTCATTCCATATCTAA
33544191 G
1 G
33544192 ATCCGACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:33544532 original size:171 final size:169
Alignment explanation
Indices: 33544204--33544519 Score: 382
Period size: 171 Copynumber: 1.9 Consensus size: 169
33544194 CCGACCAGAC
* *
33544204 TGAGGGTTGCAGTAGCAGGACCAACAGCAGGATCGATAGCACGCAGGGGGACCGAGCCGATCCTC
1 TGAGGGTTGCAGTAGCAGGACCAACAGCAGGATCGACAACACGCAGGGGGACCGAGCCGATCCTC
* * ** * * * *
33544269 AGGTTACGCATTCTACCTCTCCGGTCGGTTGAGCGCCCGCACGCTCATTTCATGGTTTGGCTTAG
66 AGGTTACACATTATACCTCTCCGACCGGCTGAACGCCCGCACGCTCATTTCATGGGTTGACTTAG
33544334 GCATACAGAGTTCATTCCATGTCTAAGCCCCAGCTGAAA
131 GCATACAGAGTTCATTCCATGTCTAAGCCCCAGCTGAAA
** * * * * *
33544373 TGAGGGTTGTGGTAGCAGGACCAGCAGCAGGATCGGCAACATGCAAAGGGGGACCGGGCTGATCC
1 TGAGGGTTGCAGTAGCAGGACCAACAGCAGGATCGACAACACGC--AGGGGGACCGAGCCGATCC
* * * * **
33544438 -CCGGCTTACACATTATGCCTCTCCGACCGGCTGAACGCTCGCATGCTTGTTTCATGGGTTGACT
64 TCAGG-TTACACATTATACCTCTCCGACCGGCTGAACGCCCGCACGCTCATTTCATGGGTTGACT
*
33544502 TAGGCATACGGAGTTCAT
128 TAGGCATACAGAGTTCAT
33544520 CAGTAGTCTA
Statistics
Matches: 120, Mismatches: 24, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
169 37 0.31
170 3 0.03
171 80 0.67
ACGTcount: A:0.22, C:0.27, G:0.29, T:0.22
Consensus pattern (169 bp):
TGAGGGTTGCAGTAGCAGGACCAACAGCAGGATCGACAACACGCAGGGGGACCGAGCCGATCCTC
AGGTTACACATTATACCTCTCCGACCGGCTGAACGCCCGCACGCTCATTTCATGGGTTGACTTAG
GCATACAGAGTTCATTCCATGTCTAAGCCCCAGCTGAAA
Found at i:33544552 original size:26 final size:26
Alignment explanation
Indices: 33544505--33544557 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
33544495 GTTGACTTAG
* *
33544505 GCATACGGAGTTCATCAGTAGTCTAA
1 GCATACAGAGTTCATCACTAGTCTAA
33544531 GCATACAGAGTTCATTC-CTAGTCTAA
1 GCATACAGAGTTCA-TCACTAGTCTAA
33544557 G
1 G
33544558 ATCAGATCCG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCACTAGTCTAA
Found at i:33545040 original size:26 final size:26
Alignment explanation
Indices: 33545004--33545056 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33544994 GTTGGCTTAG
33545004 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
33545030 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
33545056 G
1 G
33545057 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:33545712 original size:26 final size:26
Alignment explanation
Indices: 33545676--33545742 Score: 118
Period size: 26 Copynumber: 2.6 Consensus size: 26
33545666 GTTGACTTAG
33545676 GCATACAGAGTTCATCTCTAGTCTAA
1 GCATACAGAGTTCATCTCTAGTCTAA
33545702 GCATACAGAGTTCATCTCTAGTCTAA
1 GCATACAGAGTTCATCTCTAGTCTAA
33545728 GCATA-AGGAGTTCAT
1 GCATACA-GAGTTCAT
33545743 TCCCAGTCTA
Statistics
Matches: 40, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
25 1 0.03
26 39 0.98
ACGTcount: A:0.31, C:0.21, G:0.18, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATCTCTAGTCTAA
Found at i:33545750 original size:26 final size:26
Alignment explanation
Indices: 33545676--33545754 Score: 108
Period size: 26 Copynumber: 3.0 Consensus size: 26
33545666 GTTGACTTAG
*
33545676 GCATACAGAGTTCATCTCTAGTCTAA
1 GCATACAGAGTTCATCTCCAGTCTAA
*
33545702 GCATACAGAGTTCATCTCTAGTCTAA
1 GCATACAGAGTTCATCTCCAGTCTAA
33545728 GCATA-AGGAGTTCAT-TCCCAGTCTAA
1 GCATACA-GAGTTCATCT-CCAGTCTAA
33545754 G
1 G
33545755 ATTGGACCGG
Statistics
Matches: 50, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
25 2 0.04
26 48 0.96
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.29
Consensus pattern (26 bp):
GCATACAGAGTTCATCTCCAGTCTAA
Found at i:33546221 original size:159 final size:157
Alignment explanation
Indices: 33545728--33546230 Score: 469
Period size: 159 Copynumber: 3.2 Consensus size: 157
33545718 TCTAGTCTAA
* ** * *
33545728 GCATAAGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGACAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGACAGCAGGATCGACA
* * * * * *
33545793 GCACGCA-GGGGGACTGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGACTGGCTGAGTGCC
66 GCACGAAGGGGGGACCGGGCCGATCCCTGGCTTGCGCATTATGCCTCTCCGAC-GGCTGAGCGCC
* *
33545857 CGCCACACCCGTTTCGTGGGTTGGCTTAG
130 CG-CACGCTCGTTTCGTGGGTTGGCTTAG
** * * *
33545886 GCATACGGAGTTCATT-CCATGTCTAAGCCCCAG-CCGGACTGAGGGTTGTGGCAGCGGGA-CCA
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACTGAGGGTTGTGACAGCAGGATCGA
* * * * *
33545948 GCAGCAC-AGAGAGGAGGACCGGGCCGATCCCTAGCTTGGGCATTATGCCTCTCCAGCCGGCTCA
64 -CAGCACGA-AG-GGGGGACCGGGCCGATCCCTGGCTTGCGCATTATGCCTCTCC-GACGGCTGA
* * * * * * *
33546012 ACGCCCACACGATCATTTTGTGGGTCGCCTTAG
125 GCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * *
33546045 GCATACGAAATTCATTCCCAATCTAAGATCAGACCGGACTGAGGGTTATGACAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGACAGCAGGATCGACA
* * * * ** *
33546110 GCACGTAAGGGGGGACCAGGCCGGTCCCTGGCTTGTGCATTTTGCCTCTCCGATCGATTGAGCAC
66 GCACG-AAGGGGGGACCGGGCCGATCCCTGGCTTGCGCATTATGCCTCTCCGA-CGGCTGAGCGC
* *
33546175 CCGTACGCTTGTTTCGTGGGTTGGCTTAG
129 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
*
33546204 GCATACGGAGTTTATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
33546231 CATATGGAGT
Statistics
Matches: 268, Mismatches: 63, Indels: 27
0.75 0.18 0.08
Matches are distributed among these distances:
157 5 0.02
158 58 0.22
159 151 0.56
160 51 0.19
161 3 0.01
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGACAGCAGGATCGACA
GCACGAAGGGGGGACCGGGCCGATCCCTGGCTTGCGCATTATGCCTCTCCGACGGCTGAGCGCCC
GCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:33546233 original size:26 final size:26
Alignment explanation
Indices: 33546204--33546256 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
33546194 GTTGGCTTAG
*
33546204 GCATACGGAGTTTATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
33546230 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
33546256 G
1 G
33546257 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:33546619 original size:26 final size:26
Alignment explanation
Indices: 33546582--33546634 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33546572 GTTGACTTAG
33546582 GCATACGAAGTTCA-TCCTCAGTCTAA
1 GCATACGAAGTTCATTCCT-AGTCTAA
*
33546608 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCTAGTCTAA
33546634 G
1 G
33546635 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCTAGTCTAA
Found at i:33546966 original size:368 final size:367
Alignment explanation
Indices: 33546154--33547559 Score: 1552
Period size: 367 Copynumber: 3.8 Consensus size: 367
33546144 GTGCATTTTG
* * * * * * * * *
33546154 CCTCTCCGATCGATTGAGCACCCGTACGCTTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTTAT
1 CCTCTCCGGTCGACTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCAT
* * * * * * *
33546219 -TCCATGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAAGGTTACGGTA
66 CCCCA-GTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTA---T-
* * *
33546283 GCAGGACCAACAGCAGGATCGACAGCACGCAGGGGGAGT-GGGCCGATCCCTGACTTGAACATTC
126 ---GG-----TAGCAGGATCGACAGCACGCAGGGGGA-TCGGGCCGATCCCCGACTTGCACATTC
* * * * * *
33546347 TGCCTCTCCGACTGGCTGAGCGCCCATACGCTCGTTTCGTGGGTTGGCTTAGGCATCCGGAGTTC
182 TACCTCTCCGACTGACTGAGTGCCCACACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTC
* * * *
33546412 ATTCCATGTCTAAGCCCCAGCCGGACCGAAGGTTGTGGTAGTAAGACTGACAGC-GGATCGGCAG
247 ATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCAGGACTGACAGCGGGATCGGCAG
* *
33546476 CACGTAGAGGGGGACCGGGCTGATCCCCAACTTATGCATTTTGCCTCTTCGACC-A
312 CACGTAGAGGGGGACCGGGCTGATCCCCGACTTATGCATTATGCCTCTTCGACCGA
* *
33546531 GCCTCTCCGATCGACTGAGCG-CTCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTC
1 -CCTCTCCGGTCGACTGAGCGCCT-GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTC
* * *
33546595 ATCCTCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGGGGGTTGTGGT
64 ATCCCCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTATGGT
* * * *
33546660 AGCAGGATCGACAGCACGCAGAGGGGATCGGGTCGATCCCCGCCTTGCACATTCTGTCC-CTCTG
129 AGCAGGATCGACAGCACGCAG-GGGGATCGGGCCGATCCCCGACTTGCACATTCT-ACCTCTCCG
* * * *
33546724 GCTGACTGAGTGCCCGCACGTTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAGGTC
192 ACTGACTGAGTGCCCACACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
** * ** * * **
33546789 TAAGCCCCAGTTGGACCGAGGGTTGTGGCAGTAGGACTGGTAGCGGGATCGACAACACACAGAGG
257 TAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCAGGACTGACAGCGGGATCGGCAGCACGTAGAGG
**
33546854 GGGACCGGG-TAGATCCCCGACTTGCGCATTATGCCTCTTCGACCGA
322 GGGACCGGGCT-GATCCCCGACTTATGCATTATGCCTCTTCGACCGA
* * * *
33546900 CCTCTCCGGTCGACTGAGTGCCTGCACGCTCGTTTCATGGGTTCACTTAGGCATACGGAGTTCAT
1 CCTCTCCGGTCGACTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCAT
* * * * *
33546965 CCCCAGTCTAAGCATATGGAGTTCATTCCTAGTCTAAGATCGGATCGGACCGAGGGTTACGGTAG
66 CCCCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTATGGTAG
* * * * * * * ** *
33547030 TAGGATCGGCAGCACGTAGGGGGACCGGGCCGATCCCTGTCTTGCGCATTCTACCTCTCTAACCG
131 CAGGATCGACAGCACGCAGGGGGATCGGGCCGATCCCCGACTTGCACATTCTACCTCTCCGACTG
*
33547095 ACTGAGTGCCCACACGCTCGTTTCATGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAG
196 ACTGAGTGCCCACACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
* * * * *
33547160 CCTCAGCCGGACCGAGGGTTGTGGTAACAGGACCGACAGCGGGATCGGTAGCACGTAGAGGGGGA
261 CCCCAGCCGGACCGAGGGTTGTGGCAGCAGGACTGACAGCGGGATCGGCAGCACGTAGAGGGGGA
* ** * * * ** *
33547225 TCGGGCTGATCTTCGGCTTATGCATTATGCCTCTCCAATTGG
326 CCGGGCTGATCCCCGACTTATGCATTATGCCTCTTCGACCGA
* * * * * *
33547267 CCACTTCGGCCGACTGAGCGCCCGTACGCTCGTTTTGTGGGTTGACTTAGGCATACGAAGTTCAT
1 CCTCTCCGGTCGACTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCAT
* *
33547332 CCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTATGGCAG
66 CCCCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTATGGTAG
* * ** * *
33547397 CAGGATCGGCAGCACGCAGGGGAGATCGAGTTGATCCCCGGCTTG-AGGATTCTACCTCTCCCGA
131 CAGGATCGACAGCACGCAGGGG-GATCGGGCCGATCCCCGACTTGCA-CATTCTACCTCT-CCGA
* * *
33547461 C-GGCTGAGTGCCCACACACTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTTCATGTCT
193 CTGACTGAGTGCCCACACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
* ** * *
33547525 AAGCCCTATTCGGACCGAGTGTTATGGCAGCAGGA
258 AAGCCCCAGCCGGACCGAGGGTTGTGGCAGCAGGA
33547560 TCGGCTGAGT
Statistics
Matches: 868, Mismatches: 146, Indels: 38
0.83 0.14 0.04
Matches are distributed among these distances:
366 24 0.03
367 433 0.50
368 299 0.34
369 6 0.01
371 2 0.00
375 1 0.00
377 1 0.00
378 100 0.12
379 2 0.00
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (367 bp):
CCTCTCCGGTCGACTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCAT
CCCCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTATGGTAG
CAGGATCGACAGCACGCAGGGGGATCGGGCCGATCCCCGACTTGCACATTCTACCTCTCCGACTG
ACTGAGTGCCCACACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
CCCCAGCCGGACCGAGGGTTGTGGCAGCAGGACTGACAGCGGGATCGGCAGCACGTAGAGGGGGA
CCGGGCTGATCCCCGACTTATGCATTATGCCTCTTCGACCGA
Found at i:33546980 original size:26 final size:26
Alignment explanation
Indices: 33546950--33547002 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
33546940 GTTCACTTAG
33546950 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
33546976 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
33547002 G
1 G
33547003 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:33547346 original size:26 final size:26
Alignment explanation
Indices: 33547317--33547369 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
33547307 GTTGACTTAG
33547317 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
33547343 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
33547369 G
1 G
33547370 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:33547638 original size:100 final size:100
Alignment explanation
Indices: 33547461--33547655 Score: 282
Period size: 100 Copynumber: 1.9 Consensus size: 100
33547451 CCTCTCCCGA
* * *
33547461 CGGCTGAGTGCCCACACACTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTTCATGTCTA
1 CGGCTGAGTGCCCACACACCCGTTTCATGGGTTGGCTTAGACATACGGAGTTCATTCCATGTCTA
* * *
33547526 AGCCCTATTCGGACCGAGTGTTATGGCAGCAGGAT
66 AGCCCCAGTCGGACCGAGGGTTATGGCAGCAGGAT
* * ** *
33547561 CGGCTGAGTGCCCGCACGCCCGTTTTGTGGGTTGGCTTAGACATAGGGAGTTCATTCCATGTCTA
1 CGGCTGAGTGCCCACACACCCGTTTCATGGGTTGGCTTAGACATACGGAGTTCATTCCATGTCTA
*
33547626 AGCCCCAGTCGGACCGAGGGTTGTGGCAGC
66 AGCCCCAGTCGGACCGAGGGTTATGGCAGC
33547656 GAGACCGGCA
Statistics
Matches: 83, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
100 83 1.00
ACGTcount: A:0.18, C:0.25, G:0.31, T:0.26
Consensus pattern (100 bp):
CGGCTGAGTGCCCACACACCCGTTTCATGGGTTGGCTTAGACATACGGAGTTCATTCCATGTCTA
AGCCCCAGTCGGACCGAGGGTTATGGCAGCAGGAT
Found at i:33547944 original size:159 final size:159
Alignment explanation
Indices: 33547561--33547944 Score: 450
Period size: 159 Copynumber: 2.4 Consensus size: 159
33547551 GCAGCAGGAT
* * * * *
33547561 CGGCTGAGTGCCCGCACGCCCGTTTTGTGGGTTGGCTTAGACATAGGGAGTTCATTCCATGTCTA
1 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTA
* * ** * * *
33547626 AGCCCCAGTCGGACCGAGGGTTGTGGCAGCGAGACCGGCAGCACGCAGAGGGCAATCGGGCTGAT
66 AGCACCAGCCAAACCGAGGGTTGCGGCAGCGAGACCGACAGCACGCAGAGGGCAATCGGGCCGAT
33547691 CCCCGGCTTGCGCATTATACCTCTCCGAC
131 CCCCGGCTTGCGCATTATACCTCTCCGAC
* * * * * * * *
33547720 CGGTTCAGCACCCGCATGCTCGTTTCATGGGTTGACTTAGGCATAAGAAGTTCATTCCCA-ATCT
1 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATT-CCATGTCT
* * * * *
33547784 AAG-ATCAGACCAAACCGAGGGTTGCGGCAGC-AGGATCGACAGCACGTAGGGGGCGATCGGGCC
65 AAGCACCAG-CCAAACCGAGGGTTGCGGCAGCGA-GACCGACAGCACGCAGAGGGCAATCGGGCC
* * *
33547847 GGTCCCCGGCTTGCGCATTTTGCCTCTCCGAC
128 GATCCCCGGCTTGCGCATTATACCTCTCCGAC
* *
33547879 CGGCTGAGCGCCCGCACGCTTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
1 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTA
33547944 A
66 A
33547945 TCGTACGGAG
Statistics
Matches: 183, Mismatches: 38, Indels: 8
0.80 0.17 0.03
Matches are distributed among these distances:
158 7 0.04
159 173 0.95
160 3 0.02
ACGTcount: A:0.18, C:0.29, G:0.30, T:0.22
Consensus pattern (159 bp):
CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTA
AGCACCAGCCAAACCGAGGGTTGCGGCAGCGAGACCGACAGCACGCAGAGGGCAATCGGGCCGAT
CCCCGGCTTGCGCATTATACCTCTCCGAC
Found at i:33548782 original size:26 final size:26
Alignment explanation
Indices: 33548753--33548805 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
33548743 GTTGGCTTAG
* *
33548753 GCATACGGAGTTTATT-CCATGTCTAA
1 GCATACGGAGGTCATTCCCA-GTCTAA
*
33548779 GCATATGGAGGTCATTCCCAGTCTAA
1 GCATACGGAGGTCATTCCCAGTCTAA
33548805 G
1 G
33548806 ATCAAACCAG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGGTCATTCCCAGTCTAA
Found at i:33548929 original size:184 final size:184
Alignment explanation
Indices: 33548595--33548964 Score: 492
Period size: 184 Copynumber: 2.0 Consensus size: 184
33548585 GTTGACTTAG
* **
33548595 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTACGGCAGCAGGATCGACA
1 GCATACGGAGGTCATTCCCAGTCTAAGATCAAACCAGACCAAGGGTTACGGCAGCAGGATCGACA
* * * * * *
33548660 GCACACTGGGGGGATCGGGCTGATCCCCGACTTGTGCATTCTGCCTCTCCGACCGGCTGAGCGCC
66 GCACACAGGAGGGACCGGGCCGATCCCCGACTTGCGCATTCTACCTCTCCGACCGGCTGAGCGCC
** * *
33548725 CGCATGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTTATTCCATGTCTAA
131 CGCACACTCATTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAA
* * * *
33548779 GCATATGGAGGTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGCGGTAGCAGGATCGGA-
1 GCATACGGAGGTCATTCCCAGTCTAAGATCAAACCAGACCAAGGGTTACGGCAGCAGGATC-GAC
* * * * * *
33548843 AGCACGCAGGAGGGACCGGGCCGATTCCTGGCTTGCGCATTCTACCTCTCCGTCCGGCTGAGCGT
65 AGCACACAGGAGGGACCGGGCCGATCCCCGACTTGCGCATTCTACCTCTCCGACCGGCTGAGCGC
*
33548908 CCGCACACTC-GTTCTGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAA
130 CCGCACACTCATTTC-GTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAA
33548963 GC
1 GC
33548965 CCCAGCCGAA
Statistics
Matches: 160, Mismatches: 24, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
183 3 0.02
184 155 0.97
185 2 0.01
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (184 bp):
GCATACGGAGGTCATTCCCAGTCTAAGATCAAACCAGACCAAGGGTTACGGCAGCAGGATCGACA
GCACACAGGAGGGACCGGGCCGATCCCCGACTTGCGCATTCTACCTCTCCGACCGGCTGAGCGCC
CGCACACTCATTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAA
Found at i:33549086 original size:159 final size:160
Alignment explanation
Indices: 33548779--33549283 Score: 419
Period size: 159 Copynumber: 3.2 Consensus size: 160
33548769 CCATGTCTAA
* * * * * *
33548779 GCATATGGAGGTCATTCCCA-GTCTAAG-ATCAAACCAGACCGAGGGTTGCGGTAGCAGGATCGG
1 GCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCAGACCGAGGGTTGCGGCAGCAGGA-AGG
* * * * * ** * * *
33548842 A-AGCACGC--AGGAGGGACCGGGCCGATTCCTGGCTTGCGCATTCTACCTCTCCGTCCGGCTGA
64 ACAACACGCAAAGG-GGGACTGGACCTATCCCCAGCTTGCGCATTCTGCCTCTTCGACCGGCTGA
*
33548904 GCG-TCCGCACACTCG-TTCTGTGGGTTGGCTTAG
128 GCGCT-CGCACGCTCGTTTC-GTGGGTTGGCTTAG
* * * *
33548937 GCATACGAAGTTCATTCCATGTCTAAGCCCCAG-CC-GAACTGAGGGTTGTGGCAGCAGGACAGG
1 GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAG-ACCGAGGGTTGCGGCAGCAGGA-AGG
* * * * * *
33549000 -CAGCGCGCAAAGGGGGA-TCGG-GCTGATCCCCAGCTTGCGCATTATGCCTCTTCGACCGGTTT
64 ACAACACGCAAAGGGGGACT-GGACCT-ATCCCCAGCTTGCGCATTCTGCCTCTTCGACCGGCTG
* *
33549062 AGCGCTCGCACGCTCGTTTCGTGGGTTGACTTAT
127 AGCGCTCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * *
33549096 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGATCAGACCGAGGGTTGCGGCAGCAGGATGGA
1 GCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCAGACCGAGGGTTGCGGCAGCAGGAAGGA
* ** * ** * *
33549159 CAACATGCATGGGGGGACTGGACCTATCCCCGGCTTGCGTGTTCTGCCTC-TCCAGCTGGCTGAG
65 CAACACGCAAAGGGGGACTGGACCTATCCCCAGCTTGCGCATTCTGCCTCTTCGA-CCGGCTGAG
* *
33549223 CGCCCGCACGCTCGTTTCATGGGTTGGCTTAG
129 CGCTCGCACGCTCGTTTCGTGGGTTGGCTTAG
*
33549255 GCATACGGAGTTCATTCTATGTCTAAGCA
1 GCATACGGAGTTCATTCCATGTCTAAGCA
33549284 TACGGAGTTC
Statistics
Matches: 275, Mismatches: 53, Indels: 36
0.76 0.15 0.10
Matches are distributed among these distances:
157 4 0.01
158 60 0.22
159 196 0.71
160 15 0.05
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.23
Consensus pattern (160 bp):
GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCGAGGGTTGCGGCAGCAGGAAGGAC
AACACGCAAAGGGGGACTGGACCTATCCCCAGCTTGCGCATTCTGCCTCTTCGACCGGCTGAGCG
CTCGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:33549304 original size:26 final size:26
Alignment explanation
Indices: 33549255--33549307 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
33549245 GTTGGCTTAG
*
33549255 GCATACGGAGTTCATTCTATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
33549281 GCATACGGAGTTCTTTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
33549307 G
1 G
33549308 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:33550316 original size:158 final size:158
Alignment explanation
Indices: 33550023--33550995 Score: 474
Period size: 158 Copynumber: 6.0 Consensus size: 158
33550013 GAATATGGAG
* * * ** * * *
33550023 TTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTATGGTAGCGGGACCGGTAGCACGCAGGG
1 TTCACTCCCAGTCTAAGACCGAACCAGACCGAGGGTTGTGGCAGCGGGACCGGCAGCACGCAGGG
* * * * * * *
33550088 GGGACCAGGCCGATCCCCGGCTTGCGCATTTTGCCTTTTCG-GTAGGCTGAGCACCCGCACGCCC
66 GGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACT-GGCTCAGCACCCGCACACCC
* * ** *
33550152 GTTTCGTGGGTTGGCTTAGGCATAGGGAG
130 GATTCGTGGGTTGACTTAGGCATACAGAA
* * *
33550181 TTCACT-CCATGTCTAAGCCCTAGCCAGACCGA-GGTTGTGGCAGCGGGACCGGCAGCACGCAGA
1 TTCACTCCCA-GTCTAAGACCGAACCAGACCGAGGGTTGTGGCAGCGGGACCGGCAGCACGCAG-
* * * ** * *
33550244 GGGGGACCGGGCCGATCCTCGACTTGTGCATTATGCCTCTCCGACTGGCTCAGTGCTCGCACACT
64 GGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACTGGCTCAGCACCCGCACACC
33550309 CGATTCGTGGGTTGACTTAGGCATACAGAA
129 CGATTCGTGGGTTGACTTAGGCATACAGAA
* * * * * * *
33550339 TTCATTCCCAGTCTAAGATCGAACCGGACTGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGG
1 TTCACTCCCAGTCTAAGACCGAACCAGACCGAGGGTTGTGGCAGCGGGACCGGCAGCACGCAGGG
* * ** * * *
33550404 GGGACTGGGTCGATCCCCGGCTTGCGCATGCTGCCTCTCCGACCGGCTGGGCACCCACCCGCACG
66 GGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACTGGCT---CA-GCACCCGCACA
* * * * * * *
33550469 CTCGTTTCATGTGTTGGCTTAGGTATACAGAG
127 CCCGATTCGTGGGTTGACTTAGGCATACAGAA
* * ** ** * ** * *
33550501 TTCA-TTCCACGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTG
1 TTCACTCCCA-GTCTAAG---ACCGA-ACCAGACCGAGGGT-TG-T-GG--C--A--G-CGG--G
* * *
33550565 CAACAGCAGGATCGACAGCATGCAGGGGGGACCGGGCCGATCCCCGGGTTGCGCATTCTGCCTCT
49 --AC--C--G---G-CAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCT
* * * * ** * * * * ** *
33550630 CCG-GTCGGCAT-AACGCCTGCATGCCTGTTTTGTGGGTTGGCTTAGGCATAGGGAG
104 CCGACT-GGC-TCAGCACCCGCACACCCGATTCGTGGGTTGACTTAGGCATACAGAA
* * * * * * *
33550685 TTCA-TTCCATGTCTAAGCCCCAACCGGACTGAGGGTTGTGGCAACGGGACCGACAGCACGCAGA
1 TTCACTCCCA-GTCTAAGACCGAACCAGACCGAGGGTTGTGGCAGCGGGACCGGCAGCACGCAG-
* * * * * * *
33550749 GGGGGATC-GGTCGATCCCCGACTTGCGAATTATGCCTCTCCGACCGGCTCAGCGCCCACACGA-
64 GGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACTGGCTCAGCACCCGCAC-AC
* * * * * *
33550812 TCGTTTTGTGGGATGACTTAGGCATACGGAG
128 CCGATTCGTGGGTTGACTTAGGCATACAGAA
* * * ** * * *
33550843 TTCATTCCCAGTCTAAGATC-AGACCGGACCGAGGGTTACGGCAGCAGGATCGACAGCACGCAGG
1 TTCACTCCCAGTCTAAGACCGA-ACCAGACCGAGGGTTGTGGCAGCGGGACCGGCAGCACGCAGG
* * * * * * *
33550907 GGGGACC-GGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTC
65 GGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACTGGCTCAGCACCCGCACACCC
* *
33550971 GTTTCGTGGGTTGGCTTAGGCATAC
130 GATTCGTGGGTTGACTTAGGCATAC
33550996 GGAGTTCATT
Statistics
Matches: 620, Mismatches: 150, Indels: 91
0.72 0.17 0.11
Matches are distributed among these distances:
157 111 0.18
158 278 0.45
159 42 0.07
161 6 0.01
162 44 0.07
164 1 0.00
165 3 0.00
166 7 0.01
167 1 0.00
168 2 0.00
169 2 0.00
170 2 0.00
171 1 0.00
173 2 0.00
175 2 0.00
176 1 0.00
177 2 0.00
178 2 0.00
179 1 0.00
180 6 0.01
181 2 0.00
182 1 0.00
184 48 0.08
185 1 0.00
188 51 0.08
189 1 0.00
ACGTcount: A:0.18, C:0.29, G:0.31, T:0.21
Consensus pattern (158 bp):
TTCACTCCCAGTCTAAGACCGAACCAGACCGAGGGTTGTGGCAGCGGGACCGGCAGCACGCAGGG
GGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACTGGCTCAGCACCCGCACACCCG
ATTCGTGGGTTGACTTAGGCATACAGAA
Found at i:33550527 original size:26 final size:26
Alignment explanation
Indices: 33550493--33550543 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
33550483 TGGCTTAGGT
33550493 ATACAGAGTTCATT-CCACGTCTAAGC
1 ATACAGAGTTCATTCCCA-GTCTAAGC
*
33550519 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
33550544 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGC
Found at i:33550904 original size:504 final size:497
Alignment explanation
Indices: 33549913--33551557 Score: 2028
Period size: 504 Copynumber: 3.3 Consensus size: 497
33549903 TACCAACCAT
* * *** *
33549913 TCGATCCCCGGCTTGCGCATCCTGCCTCTCTGGTTGGCTGAGCGCCCGCACGCTCGTTTTATGGG
1 TCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCATGGG
* * * * *
33549978 TTGACTTAGGCATACATAGTTCA-TCCCCAGTCTAAGAATATGGAGTTCATTCCCAGTCTAAGAT
66 TTGGCTTAGGCATACAGAGTTCATTCCAC-GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
* ***** * * * *
33550042 CGGACTGGACCGAGGGTTATGGTAGCGGGACCGGTAGCACGCAGGGGGGACCAGGCCGATCCCCG
130 CGGACCGGACCGAGGGTTGCAACAGCAGGATCGGTAGCATGCAGGGGGGACCGGGCCGATCCCCG
* * * * *
33550107 GCTTGCGCATTTTGCCTTTTCGGTAGGCTGAGCACCCGCACGCCCGTTTCGTGGGTTGGCTTAGG
195 GCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCACCCGCACGCCTGTTTCGTGGGTTGGCTTAGG
* * * *
33550172 CATAGGGAGTTCACTCCATGTCTAAGCCCTAGCCAGACCGA-GGTTGTGGCAGCGGGACCGGCAG
260 CATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACTGAGGGTTGTGGCAGCGGGACCGGCAG
* * * * * *
33550236 CACGCAGAGGGGGACCGGGCCGATCCTCGACTTGTGCATTATGCCTCTCCGACTGGCTCAGTGCT
325 CACGCAGAGGGGGATC-GGTCGATCCCCGACTTGCGCATTATGCCTCTCCGACCGGCTCAGCGC-
* * *
33550301 CGCACAC-TCGATTCGTGGGTTGACTTAGGCATACAGAATTCATTCCCAGTCTAAGATCGAACCG
388 C-CACACGTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCG-ACCG
*
33550365 GACTGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGGACTGGG
451 GACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGGAC-GGG
* * *
33550413 TCGATCCCCGGCTTGCGCATGCTGCCTCTCCGACCGGCTGGGCACCCACCCGCACGCTCGTTTCA
1 TCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCT--G-A-GCGCCCGCACGCTCGTTTCA
* *
33550478 TGTGTTGGCTTAGGTATACAGAGTTCATTCCACGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
62 TGGGTTGGCTTAGGCATACAGAGTTCATTCCACGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
**
33550543 GATCGGACCGGACCGAGGGTTGCAACAGCAGGATCGACAGCATGCAGGGGGGACCGGGCCGATCC
127 GATCGGACCGGACCGAGGGTTGCAACAGCAGGATCGGTAGCATGCAGGGGGGACCGGGCCGATCC
* * * * * *
33550608 CCGGGTTGCGCATTCTGCCTCTCCGGTCGGCAT-AACGCCTGCATGCCTGTTTTGTGGGTTGGCT
192 CCGGCTTGCGCATTCTGCCTCTCCGGTCGGC-TGAGCACCCGCACGCCTGTTTCGTGGGTTGGCT
* *
33550672 TAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACTGAGGGTTGTGGCAACGGGACCG
256 TAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACTGAGGGTTGTGGCAGCGGGACCG
* *
33550737 ACAGCACGCAGAGGGGGATCGGTCGATCCCCGACTTGCGAATTATGCCTCTCCGACCGGCTCAGC
321 GCAGCACGCAGAGGGGGATCGGTCGATCCCCGACTTGCGCATTATGCCTCTCCGACCGGCTCAGC
* *
33550802 GCCCACACGATCGTTTTGTGGGATGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
386 GCCCACACG-TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GAC
** *
33550867 CGGACCGAGGGTTACGGCAGCAGGATCGACAGCACGCAGGGGGGACCGG
449 CGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGGACGGG
*
33550916 TCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
1 TCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCATGGG
* *
33550981 TTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
66 TTGGCTTAGGCATACAGAGTTCATTCCACGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* *
33551046 AGACCGGACCGAGGGTTATGGCAGCAGGACCAGCAGTAAGATCGGTAGCATGCAGAGGGGGATCG
131 GGACCGGACCGAGGG-T-T----GCA--A-CAGCAG---GATCGGTAGCATGCAG-GGGGGACCG
* * *
33551111 AGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCACCCGCACG-TTCGTTTCGT
183 GGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCACCCGCACGCCT-GTTTCGT
* *
33551175 GGGTTGGCTTAGGCATAGAGAGTTCATTCCATGTGTAAGCCCCAGCCGGACTGAGGGTTGTGGCA
247 GGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACTGAGGGTTGTGGCA
* * * * ** *
33551240 GCGGGACTGGCAGCACACAGAAGGGGATTGGGTCGATCCCCGACTTGCGCATTATGCCTCTTTGG
312 GCGGGACCGGCAGCACGCAGAGGGGGA-TCGGTCGATCCCCGACTTGCGCATTATGCCTCTCCGA
* * * * *
33551305 TCAGCTCAGCGCCCGCACGCTCATTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCT
376 CCGGCTCAGCGCCCACACG-TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
* * *
33551370 AGGATCGGATCGGACCGAGGGTTGTGGCAGCAGGATCGACAGGACGCA-GGGGGACCGGG
440 AAGATC-GACCGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGGA-CGGG
* * * * * * * * * *
33551429 -CTGATCCCCAGCTTGCGCATTCTACCTTTTCGGCCAGCTGAGTGCCCGTACGCTCGTTACGTGG
1 TC-GATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCATGG
* * * *
33551493 TTTGG-TTAAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAATCTAAGA
65 GTTGGCTT-AGGCATACAGAGTTCATTCCACGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
33551557 T
129 T
33551558 TTTGAGCCAC
Statistics
Matches: 995, Mismatches: 121, Indels: 45
0.86 0.10 0.04
Matches are distributed among these distances:
499 96 0.10
500 36 0.04
501 2 0.00
502 6 0.01
503 42 0.04
504 346 0.35
505 45 0.05
507 1 0.00
508 6 0.01
511 16 0.02
512 152 0.15
513 247 0.25
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.22
Consensus pattern (497 bp):
TCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCATGGG
TTGGCTTAGGCATACAGAGTTCATTCCACGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
GGACCGGACCGAGGGTTGCAACAGCAGGATCGGTAGCATGCAGGGGGGACCGGGCCGATCCCCGG
CTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCACCCGCACGCCTGTTTCGTGGGTTGGCTTAGGC
ATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACTGAGGGTTGTGGCAGCGGGACCGGCAGC
ACGCAGAGGGGGATCGGTCGATCCCCGACTTGCGCATTATGCCTCTCCGACCGGCTCAGCGCCCA
CACGTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGACCGGACCG
AGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGGACGGG
Found at i:33550989 original size:157 final size:156
Alignment explanation
Indices: 33550517--33551016 Score: 630
Period size: 158 Copynumber: 3.2 Consensus size: 156
33550507 CCACGTCTAA
* **
33550517 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGACCGGACCGAGGGTTGCAACAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGAC
* * * ** *
33550581 AGCATGCAGGGGGGACCGGGCCGATCCCCGGGTTGCGCATTCTGCCTCTCCGGTCGGCATAACGC
65 AGCACGCAGGGGGGACC-GGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGC-TAGCGC
* *
33550646 CTGCATGC-CTGTTTTGTGGGTTGGCTTAG
128 CCGCACGCTC-GTTTTGTGGGTTGGCTTAG
* ** * * * * *
33550675 GCATAGGGAGTTCATTCCATGTCTAAGCCCCA-ACCGGACTGAGGGTTGTGGCAACGGGACCGAC
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGAC
* * * *
33550739 AGCACGCAGAGGGGGATCGGTCGATCCCCGACTTGCGAATTATGCCTCTCCGACCGGCTCAGCGC
65 AGCACGCAG-GGGGGACCGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCT-AGCGC
* * * *
33550804 CCACACGATCGTTTTGTGGGATGACTTAG
128 CCGCACGCTCGTTTTGTGGGTTGGCTTAG
*
33550833 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGAC
33550897 AGCACGCAGGGGGGACCGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCC
65 AGCACGCAGGGGGGACCGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCT-AGCGCC
*
33550962 CGCACGCTCGTTTCGTGGGTTGGCTTAG
129 CGCACGCTCGTTTTGTGGGTTGGCTTAG
33550990 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
33551017 CATACGGAGT
Statistics
Matches: 288, Mismatches: 46, Indels: 17
0.82 0.13 0.05
Matches are distributed among these distances:
156 3 0.01
157 103 0.36
158 170 0.59
159 12 0.04
ACGTcount: A:0.19, C:0.29, G:0.31, T:0.21
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACA
GCACGCAGGGGGGACCGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTAGCGCCCG
CACGCTCGTTTTGTGGGTTGGCTTAG
Found at i:33551026 original size:26 final size:26
Alignment explanation
Indices: 33550990--33551042 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
33550980 GTTGGCTTAG
33550990 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
33551016 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
33551042 G
1 G
33551043 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:33551392 original size:159 final size:159
Alignment explanation
Indices: 33551114--33551530 Score: 359
Period size: 159 Copynumber: 2.6 Consensus size: 159
33551104 GGGATCGAGC
* * * * * *
33551114 CGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCACCCGCACGTTCGTTTCGTGGGT
1 CGATCCCCGACTTGCGCATTATGCCTCTCCGGCCAGCTCAGCACCCGCACGCTCATTTCGTGGGT
* * *
33551179 TGGCTTAGGCATAGAGAGTTCATTCCATGTGTAAGCCCCAGCCGGACTGAGGGTTGTGGCAGCGG
66 TGACTTAGGCATAGAGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGG
33551244 GACTGGCAGCACACAGAAGGGGATTGGGT
131 GACTGGCAGCACACAGAAGGGGATTGGGT
** * *
33551273 CGATCCCCGACTTGCGCATTATGCCTCTTTGGTCAGCTCAGCGCCCGCACGCTCATTTCGTGGGT
1 CGATCCCCGACTTGCGCATTATGCCTCTCCGGCCAGCTCAGCACCCGCACGCTCATTTCGTGGGT
* *** * *
33551338 TGACTTATGCATACG-GAGTTCATTCCCA-GTCT-AGGATCGGATCGGACCGAGGGTTGTGGCAG
66 TGACTTAGGCATA-GAGAGTTCATT-CCATGTCTAAGCCCCAG-CCGGACCGAGGGTTGTGGCAG
* * * * **
33551400 CAGGA-TCGACAGGACGCAG--GGGGACCGGG-
128 CGGGACT-GGCAGCACACAGAAGGGGATTGGGT
* * * * * ** * * *
33551429 CTGATCCCC-AGCTTGCGCATTCTACCTTTTCGGCCAGCTGAGTGCCCGTACGCTCGTTACGTGG
1 C-GATCCCCGA-CTTGCGCATTATGCCTCTCCGGCCAGCTCAGCACCCGCACGCTCATTTCGTGG
* *
33551493 TTTG-GTTAAGGCATACG-GAGTTCATTCCATGTCTAAGC
64 GTTGACTT-AGGCATA-GAGAGTTCATTCCATGTCTAAGC
33551531 ATACGGAGTT
Statistics
Matches: 210, Mismatches: 39, Indels: 19
0.78 0.15 0.07
Matches are distributed among these distances:
156 7 0.03
157 82 0.39
158 7 0.03
159 110 0.52
160 4 0.02
ACGTcount: A:0.17, C:0.28, G:0.31, T:0.24
Consensus pattern (159 bp):
CGATCCCCGACTTGCGCATTATGCCTCTCCGGCCAGCTCAGCACCCGCACGCTCATTTCGTGGGT
TGACTTAGGCATAGAGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGG
GACTGGCAGCACACAGAAGGGGATTGGGT
Found at i:33551553 original size:26 final size:26
Alignment explanation
Indices: 33551503--33551555 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33551493 TTTGGTTAAG
*
33551503 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
33551529 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
33551555 G
1 G
33551556 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:33552039 original size:26 final size:26
Alignment explanation
Indices: 33552010--33552062 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
33552000 CCAGTCCGAT
33552010 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
33552036 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
33552062 C
1 C
33552063 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:33552117 original size:13 final size:13
Alignment explanation
Indices: 33552099--33552125 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
33552089 CGGGCACTCA
33552099 GCCGACCGGAGAG
1 GCCGACCGGAGAG
33552112 GCCGACCGGAGAG
1 GCCGACCGGAGAG
33552125 G
1 G
33552126 GATAATGCGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.30, G:0.48, T:0.00
Consensus pattern (13 bp):
GCCGACCGGAGAG
Found at i:33552721 original size:158 final size:157
Alignment explanation
Indices: 33552230--33552721 Score: 494
Period size: 158 Copynumber: 3.1 Consensus size: 157
33552220 CTTAGACATA
* * *
33552230 GAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGTC-AGCCGGAG
1 GAATGAACTTCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGA-CC-GAG
* ** * * *
33552294 AGGCAGAATGCACAAGTCGGGGATCGGTTCGATCCCCCGCTGCGTGCTGTCGATCCTACTGCTAC
64 AGGCAGAATGCGCAAGTCGGGGATCGACTCGATCCCCC-CTGCGTGCTGTCGATCCTGCTACCAC
**
33552359 AACCCTCGGTTTGGTCTGATCTTAGA-TAGG
128 AACCCTCGGTCCGGTCTGATCTTAGACT-GG
* * * ** * * * *
33552389 GAATGAAC-TCTGTATGCCTAAGTCAACCCATGAAATAAGCGTGCGGGCACTGAGCTGGCCGAGA
1 GAATGAACTTC-ATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGAGA
* * * * *
33552453 GGCATAATGCGCAAGCCGGGGATCGACTCGATCCCTCTCTGCGTGCTGTCGGTCCCGCTACCACA
65 GGCAGAATGCGCAAGTCGGGGATCGACTCGATCCC-CCCTGCGTGCTGTCGATCCTGCTACCACA
* **
33552518 ACCCTCGGTCC-GACTGGGGCTTAGACAT-G
129 ACCCTCGGTCCGGTCT-GATCTTAGAC-TGG
* * *
33552547 GAATGAA-GTCACTATGCCTAAGCCAACCTACGAAACGGGCGTGCGGGCGCTCAGCCGACCGAAG
1 GAATGAACTTCA-TATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCG-AG
* * ** * * *
33552611 AGGCAGAATGCGTAAGTCAGGGATCGAC-CTGGGCCCCCCTGTGTGCTGTCGATCTTGCTACCGC
64 AGGCAGAATGCGCAAGTCGGGGATCGACTC-GATCCCCCCTGCGTGCTGTCGATCCTGCTACCAC
33552675 AACCCTCGGTCCGGTCTGATCTTAGACTGG
128 AACCCTCGGTCCGGTCTGATCTTAGACTGG
33552705 GAATGAACTTCATATGC
1 GAATGAACTTCATATGC
33552722 TTAGACTGGG
Statistics
Matches: 267, Mismatches: 53, Indels: 27
0.77 0.15 0.08
Matches are distributed among these distances:
157 4 0.01
158 179 0.67
159 83 0.31
160 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (157 bp):
GAATGAACTTCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGAGAG
GCAGAATGCGCAAGTCGGGGATCGACTCGATCCCCCCTGCGTGCTGTCGATCCTGCTACCACAAC
CCTCGGTCCGGTCTGATCTTAGACTGG
Found at i:33552746 original size:26 final size:26
Alignment explanation
Indices: 33552695--33552747 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
33552685 CCGGTCTGAT
*
33552695 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
33552721 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
33552747 C
1 C
33552748 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:33553890 original size:155 final size:152
Alignment explanation
Indices: 33553602--33554095 Score: 493
Period size: 155 Copynumber: 3.2 Consensus size: 152
33553592 TTGGCTGGGG
* * *
33553602 CTTAGACATGGAATGAACTCCGTATGCCTAAGCC-ACCCACAAAATGAGCGTACGGGTGCTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGT-CGGGCGCTCAGC
* * *
33553666 CGACCAGAGAGGCAGAATGCGCAAGCCGAGGATCGACTCGTTCCCCCCTGCGTCCTGTCAATCCT
65 CGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGAC-CG-TCCCCCCTGCGTGCTGTCGATCCT
33553731 GCTGCAACCCTCGTATCGGTCCGAT
128 GCTGCAACCCTCGTATCGGTCCGAT
* * *
33553756 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATAAGCGTGCGGGCGTTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGT-CGGGCGCTCAG
* * * *
33553820 CCGGCCGGAGAGGCATAATGCGCAAGCC-AGGGATCG-CCGGTCCCCCCTCTGCGTGCTGCCGGT
64 CCGACCGGAGAGGCAGAATGCGCAAGCCGA-GGATCGACC-GT-CCCCC-CTGCGTGCTGTCGAT
* * * **
33553883 CCCGCTGCCACAACCCTCG-GTCTGG-CTGGGG
125 CCTGCTG---CAACCCTCGTATC-GGTC-CGAT
* * *
33553914 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTCTGGCCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTC-GGGCGCTCAGC
* * *
33553979 CGACCGGAGAGACAGAATGCGCAAGTCGAGGATCGACCCGT-CCCCCTGTGTGCTGTCGATCCTG
65 CGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGA-CCGTCCCCCCTGCGTGCTGTCGATCCTG
* * *
33554043 CGTCGTAACCTTCGGTA-CGATCCGAT
129 C-T-GCAACCCTC-GTATCGGTCCGAT
*
33554069 CTTAGAC-TAGGAATGAACTTCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
33554096 TTAGACTGGA
Statistics
Matches: 276, Mismatches: 42, Indels: 43
0.76 0.12 0.12
Matches are distributed among these distances:
153 3 0.01
154 41 0.15
155 101 0.37
156 19 0.07
157 9 0.03
158 97 0.35
159 4 0.01
160 2 0.01
ACGTcount: A:0.22, C:0.32, G:0.27, T:0.19
Consensus pattern (152 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTCGGGCGCTCAGCC
GACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCGTCCCCCCTGCGTGCTGTCGATCCTGCT
GCAACCCTCGTATCGGTCCGAT
Found at i:33553951 original size:158 final size:156
Alignment explanation
Indices: 33553576--33554024 Score: 502
Period size: 158 Copynumber: 2.9 Consensus size: 156
33553566 CCGATCTTGT
*
33553576 TGCCACAACCCTCCGTTTGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCC-ACCC
1 TGCCACAACCCT-CGTATGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCC
* * * *
33553640 ACAAAATGAGCGTACGGGTGCTCAACCGACCAGAGAGGCAGAATGCGCAAGCCGAGGATCGACTC
65 ACGAAATGAGCGT-CGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACTC
* * *
33553705 GTTCCCCCCTGCGTCCTGTCAATCCTGC
129 GTCCCCCCCTGCGTCCTGCCAATCCCGC
* **
33553733 TG---CAACCCTCGTATCGG-TCCGATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAAC
1 TGCCACAACCCTCGTAT-GGCT-GGGGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAAC
* * * * *
33553793 CCACGAAATAAGCGTGCGGGCGTTGAGCCGGCCGGAGAGGCATAATGCGCAAGCC-AGGGATCG-
63 CCACGAAATGAGCGT-CGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGA-GGATCGA
* **
33553856 C-CGGTCCCCCCTCTGCGTGCTGCCGGTCCCGC
126 CTC-GTCCCCCC-CTGCGTCCTGCCAATCCCGC
* *
33553888 TGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCC
1 TGCCACAACCCTC-GTATGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCC
* * * * *
33553953 ACGAAATGGGCGTCTGGCCGCTCAGCCGACCGGAGAGACAGAATGCGCAAGTCGAGGATCGACCC
65 ACGAAATGAGCGTC-GGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACTC
33554018 GTCCCCC
129 GTCCCCC
33554025 TGTGTGCTGT
Statistics
Matches: 241, Mismatches: 34, Indels: 32
0.79 0.11 0.10
Matches are distributed among these distances:
153 7 0.03
154 51 0.21
155 70 0.29
157 3 0.01
158 95 0.39
159 14 0.06
160 1 0.00
ACGTcount: A:0.22, C:0.33, G:0.28, T:0.17
Consensus pattern (156 bp):
TGCCACAACCCTCGTATGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA
CGAAATGAGCGTCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACTCGT
CCCCCCCTGCGTCCTGCCAATCCCGC
Found at i:33554110 original size:26 final size:26
Alignment explanation
Indices: 33554069--33554121 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33554059 ACGATCCGAT
*
33554069 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
33554095 CTTAGACT-GGAGATGAACTCCGTATG
1 CTTAGACTAGGA-ATGAACTCCGTATG
33554121 C
1 C
33554122 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 3 0.12
26 22 0.88
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:33554840 original size:26 final size:26
Alignment explanation
Indices: 33554802--33554854 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33554792 GGCTCAAAAT
*
33554802 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
33554828 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
33554854 C
1 C
33554855 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:33555357 original size:159 final size:157
Alignment explanation
Indices: 33554967--33555363 Score: 431
Period size: 157 Copynumber: 2.5 Consensus size: 157
33554957 CTGTTGCCAT
* * *
33554967 AACCCTCGGTCCGAATGGGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAA
1 AACCCTCGGTCCGAATAGGGCTTAGACATGGAATAAATTCCATATGCCTAAGCCAACCCATGAAA
* *** * *
33555032 CGAGCGTGCGGGCGCTCAGTCGGTCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCAATCCC
66 CGAGCGTGCGGGTGCTCAGTCAACCGAAGAGGCAGAATGCGCAAGCCAGCGATCGGCCCAATCCC
* * * * * *
33555097 CTTGCGTGCTGTTGGTCCTGCTGCTAC
131 CTTGCATACTGTCGGTCCCGCTACCAC
* * * ** * * *
33555124 AACCCTCAGTCCG-GTCCGATCTTAGAC-TGGGAACAAACTT-CGTATGCCTAAGTCAACCCATG
1 AACCCTCGGTCCGAAT-AGGGCTTAGACAT-GGAATAAA-TTCCATATGCCTAAGCCAACCCATG
* * * **
33555186 AAACGAGCGTGCGGGTGCTGAGTCAACCGAAGAGGCATAATGCGCAAGCCAGCGATTGGCCCGGT
63 AAACGAGCGTGCGGGTGCTCAGTCAACCGAAGAGGCAGAATGCGCAAGCCAGCGATCGGCCCAAT
33555251 CCCCCTCTGCATACTGTCGGTCCCGCTACCAC
128 -CCCCT-TGCATACTGTCGGTCCCGCTACCAC
* * * *
33555283 AACCCTCGGTCCGACTAGGGCTTACACATGGAATAAATTCCCTATGCCTAAGCCAACCCACGAAA
1 AACCCTCGGTCCGAATAGGGCTTAGACATGGAATAAATTCCATATGCCTAAGCCAACCCATGAAA
*
33555348 CGGGCGTGCGGGTGCT
66 CGAGCGTGCGGGTGCT
33555364 TAACCGACCA
Statistics
Matches: 194, Mismatches: 38, Indels: 14
0.79 0.15 0.06
Matches are distributed among these distances:
156 2 0.01
157 100 0.52
158 8 0.04
159 82 0.42
160 2 0.01
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.19
Consensus pattern (157 bp):
AACCCTCGGTCCGAATAGGGCTTAGACATGGAATAAATTCCATATGCCTAAGCCAACCCATGAAA
CGAGCGTGCGGGTGCTCAGTCAACCGAAGAGGCAGAATGCGCAAGCCAGCGATCGGCCCAATCCC
CTTGCATACTGTCGGTCCCGCTACCAC
Found at i:33555379 original size:159 final size:157
Alignment explanation
Indices: 33554967--33555404 Score: 434
Period size: 159 Copynumber: 2.8 Consensus size: 157
33554957 CTGTTGCCAT
* * *
33554967 AACCCTCGGTCCGAATGGGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAA
1 AACCCTCGGTCCGAATAGGGCTTAGACATGGAATAAATTCCATATGCCTAAGCCAACCCATGAAA
* ** * *
33555032 CGAGCGTGCGGGCGCTCAGTCGGTCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCAATCCC
66 CGAGCGTGCGGGTGCTCAGTCGACCGAAGAGGCAGAATGCGCAAGCCAGCGATCGGCCCAATCCC
* * * * * *
33555097 CTTGCGTGCTGTTGGTCCTGCTGCTAC
131 CTTGCATACTGTCGGTCCCGCTACCAC
* * * ** * * *
33555124 AACCCTCAGTCCG-GTCCGATCTTAGAC-TGGGAACAAACTT-CGTATGCCTAAGTCAACCCATG
1 AACCCTCGGTCCGAAT-AGGGCTTAGACAT-GGAATAAA-TTCCATATGCCTAAGCCAACCCATG
* * * * **
33555186 AAACGAGCGTGCGGGTGCTGAGTCAACCGAAGAGGCATAATGCGCAAGCCAGCGATTGGCCCGGT
63 AAACGAGCGTGCGGGTGCTCAGTCGACCGAAGAGGCAGAATGCGCAAGCCAGCGATCGGCCCAAT
33555251 CCCCCTCTGCATACTGTCGGTCCCGCTACCAC
128 -CCCCT-TGCATACTGTCGGTCCCGCTACCAC
* * * *
33555283 AACCCTCGGTCCGACTAGGGCTTACACATGGAATAAATTCCCTATGCCTAAGCCAACCCACGAAA
1 AACCCTCGGTCCGAATAGGGCTTAGACATGGAATAAATTCCATATGCCTAAGCCAACCCATGAAA
* * ** * * * *
33555348 CGGGCGTGCGGGTGCTTAACCGACC-AGAGAGGCAGAATGTGTAAGCCGGAGATCGGC
66 CGAGCGTGCGGGTGCTCAGTCGACCGA-AGAGGCAGAATGCGCAAGCCAGCGATCGGC
33555405 TCGGTGCCTC
Statistics
Matches: 224, Mismatches: 48, Indels: 16
0.78 0.17 0.06
Matches are distributed among these distances:
156 2 0.01
157 100 0.45
158 9 0.04
159 111 0.50
160 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.18
Consensus pattern (157 bp):
AACCCTCGGTCCGAATAGGGCTTAGACATGGAATAAATTCCATATGCCTAAGCCAACCCATGAAA
CGAGCGTGCGGGTGCTCAGTCGACCGAAGAGGCAGAATGCGCAAGCCAGCGATCGGCCCAATCCC
CTTGCATACTGTCGGTCCCGCTACCAC
Found at i:33555497 original size:26 final size:26
Alignment explanation
Indices: 33555461--33555513 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
33555451 CCGATCTGAT
*
33555461 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
33555487 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
33555513 C
1 C
33555514 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:33556219 original size:26 final size:26
Alignment explanation
Indices: 33556181--33556233 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33556171 GGCTCAAAAT
*
33556181 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
33556207 CTTAGA-TGTGGAATGAACTCCATATG
1 CTTAGACTG-GGAATGAACTCCATATG
33556233 C
1 C
33556234 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 2 0.08
26 23 0.92
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:33556707 original size:158 final size:156
Alignment explanation
Indices: 33556207--33556707 Score: 431
Period size: 158 Copynumber: 3.2 Consensus size: 156
33556197 ACTCCGTATG
* *
33556207 CTTAGA-TGTGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGTTCAG
1 CTTAGACTG-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * *
33556271 CCGGTCGGAAAGGTAGAATGTGCAAGCCAGGGATCGGCCC-AGTCCCCCCTGCAG-G-TGATCGA
65 CCGGTCGGAGAGGCAGAATGCGCAAG-CAGGGATCGGCCCGA-TCCCCCCTGC-GTGCT-ATCGA
** * *
33556333 TCCTGCTGCTTTAACCCTTGGTCCGGTCTGGT
126 TCCTGCTGC-ACAACCCTCGGTCCGATCTGGT
* ** * * * *
33556365 CTTAGACTGGGACTGAACTCCGTATGGATAAGTCAACACACGAAACGAGCGTGCGGGCACTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * * * * *
33556430 CAGCCGAAGAGGCATAATGC-CAAAACCGGGTATCGGCCTGGTCCCCTCTACGTGCTGTCGATCC
66 CGGTCGGAGAGGCAGAATGCGC-AAGCAGGG-ATCGGCCCGATCCCCCCTGCGTGCTATCGATCC
** * * *
33556494 CACTACCACAACCCTCGGTCTGA-CTTGGG
129 TGCT-GCACAACCCTCGGTCCGATC-TGGT
* * * * * *
33556523 CTTAGACAT-GGAATGAATTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGTGCTCAA
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * *
33556587 CCGGTCGGAGAGGCAGAATGCGCAAGCTGGAGATCAGCCCGACCCCCCCTGCGTGCTACCGATCT
65 CCGGTCGGAGAGGCAGAATGCGCAAGCAGG-GATCGGCCCGATCCCCCCTGCGTGCTATCGATCC
* *
33556652 TGCTGTCGCAACCCTCGGTCCGATCTGAT
129 TGCTG-CACAACCCTCGGTCCGATCTGGT
33556681 CTTAGACTGGGAATGAACTCCGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
33556708 TTAGACTGGG
Statistics
Matches: 260, Mismatches: 69, Indels: 28
0.73 0.19 0.08
Matches are distributed among these distances:
157 8 0.03
158 244 0.94
159 8 0.03
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.20
Consensus pattern (156 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGTCGGAGAGGCAGAATGCGCAAGCAGGGATCGGCCCGATCCCCCCTGCGTGCTATCGATCCTG
CTGCACAACCCTCGGTCCGATCTGGT
Found at i:33557316 original size:157 final size:157
Alignment explanation
Indices: 33557026--33557548 Score: 608
Period size: 157 Copynumber: 3.3 Consensus size: 157
33557016 CTTACTGCCG
*
33557026 CAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAA
1 CAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAA
* * * *
33557091 ACAAGCT-TACGGGCGCTCAGTC-GCTGGGAGAGGTAGAATGTGCAAGCTAGGGATCGGCCCGAT
66 ACAAG-TGTACGGGCGCTCAGCCGGC-CGGAGAGGCAGAATGCGCAAGCTAGGGATCGGCCCGAT
* *
33557154 CCCCCCCGTG-TGCTATCGAT-CTGCTATCA
129 -CCCCCC-TGATGCTACCGATCCTGCTACCA
* *
33557183 CAACCTTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAA
1 CAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAA
* * * * * * *
33557248 ACTAGTGTACGGGTGCTGAGCCGGCCGTAGAGGCATAATGCGCAAGTTAGGGATTGGGCCCGATC
66 ACAAGTGTACGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCGCAAGCTAGGGA-TCGGCCCGATC
* * *
33557313 CCCCTCTGCATGCTGCCGGTCCCGCTACCA
130 CCCC-CTG-ATGCTACCGATCCTGCTACCA
* ** * **
33557343 CAACCCTCGGTCCA-ACTGGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACA
1 CAACCCTCGGTCCAGTCT-GATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCATG
** * * * *
33557406 AAACGGGTGTGCGGGCACTCAGCAGGCCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGAT
64 AAACAAGTGTACGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCGCAAGCTAGGGATCGGCCCGAT
*
33557471 CCCCCCTGCATGCTACCGATCCTGCTACCG
129 CCCCCCTG-ATGCTACCGATCCTGCTACCA
* *
33557501 CAACCCTCTGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
1 CAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
33557549 TTAGACTAGG
Statistics
Matches: 306, Mismatches: 49, Indels: 21
0.81 0.13 0.06
Matches are distributed among these distances:
156 1 0.00
157 108 0.35
158 70 0.23
159 25 0.08
160 101 0.33
161 1 0.00
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.20
Consensus pattern (157 bp):
CAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAA
ACAAGTGTACGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCGCAAGCTAGGGATCGGCCCGATCC
CCCCTGATGCTACCGATCCTGCTACCA
Found at i:33557551 original size:26 final size:26
Alignment explanation
Indices: 33557522--33557577 Score: 96
Period size: 26 Copynumber: 2.2 Consensus size: 26
33557512 CCGGTCTGAT
33557522 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
33557548 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
33557574 CTTA
1 CTTA
33557578 AGTCAACACA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
26 26 0.90
27 3 0.10
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:33561760 original size:26 final size:26
Alignment explanation
Indices: 33561724--33561776 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
33561714 CTAGTCTGAT
33561724 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
33561750 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
33561776 C
1 C
33561777 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:33562815 original size:159 final size:156
Alignment explanation
Indices: 33562471--33562971 Score: 569
Period size: 159 Copynumber: 3.2 Consensus size: 156
33562461 AACTTCGTAT
* * *
33562471 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCGAGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * *
33562536 CCGGCCGGAA-AGGCAAAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGTTGTCAATC
66 CCGGTC-GAAGAGGC-GAATGCGCAAGCCGGGGATCGACCCGGT-CCCCTTGCGTGCTGCCAATC
*
33562600 CTGCTGCCACAACCCTCAATCCGGTTCGA
128 CTGCTGCCACAACCCTCAATCCGGCTCGA
* * * *
33562629 TCTTAGAC-TAGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
* * * * * * *
33562693 ACCGATCGAAGAGGCGTAATGCGCAAGCTGAGGATCGACTCGGTGCCACTTTACGTGCTGCCAAT
65 GCCGGTCGAAGAGGCG-AATGCGCAAGCCGGGGATCGACCCGGT-CC-CCTTGCGTGCTGCCAAT
* * * *
33562758 CCCGCTGCCACAACCCTCGATCCGGCTGGG
127 CCTGCTGCCACAACCCTCAATCCGGCTCGA
* * *
33562788 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGTGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * *
33562853 CCGGTCGGAGAGGTAGAATGCGTAAGCCGGGGATCGACCCGATCCCCTTGCGTGCTGCCGATCCT
66 CCGGTCGAAGAGG-CGAATGCGCAAGCCGGGGATCGACCCGGTCCCCTTGCGTGCTGCCAATCCT
* * *
33562918 GCTGCCGCAACCCTCAGT-CGGTTCGA
130 GCTGCCACAACCCTCAATCCGGCTCGA
*
33562944 TCTTAGAC-TGGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
33562972 TTAGACTAGG
Statistics
Matches: 283, Mismatches: 53, Indels: 16
0.80 0.15 0.05
Matches are distributed among these distances:
155 1 0.00
156 29 0.10
157 35 0.12
158 91 0.32
159 125 0.44
160 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
CCGGTCGAAGAGGCGAATGCGCAAGCCGGGGATCGACCCGGTCCCCTTGCGTGCTGCCAATCCTG
CTGCCACAACCCTCAATCCGGCTCGA
Found at i:33562986 original size:26 final size:26
Alignment explanation
Indices: 33562945--33562997 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33562935 TCGGTTCGAT
33562945 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
33562971 CTTAGACTAGGG-ATGAACTCTGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
33562997 C
1 C
33562998 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:33563329 original size:26 final size:26
Alignment explanation
Indices: 33563300--33563352 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
33563290 CCGATCTGAT
33563300 CTTAGACT-GGGAATGAAC-TCTGTATG
1 CTTAGACTAGGG-ATGAACTTC-GTATG
33563326 CTTAGACTAGGGATGAACTTCGTATG
1 CTTAGACTAGGGATGAACTTCGTATG
33563352 C
1 C
33563353 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTTCGTATG
Found at i:33564069 original size:26 final size:26
Alignment explanation
Indices: 33564031--33564083 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
33564021 GGCTCAAAAT
33564031 CTTAGACTGGGAAAGAACTCCATATG
1 CTTAGACTGGGAAAGAACTCCATATG
* *
33564057 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAAAGAACTCCATATG
33564083 C
1 C
33564084 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.21, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCATATG
Found at i:33564627 original size:159 final size:158
Alignment explanation
Indices: 33564252--33564658 Score: 433
Period size: 159 Copynumber: 2.6 Consensus size: 158
33564242 AGCTCCGTAT
* ** * *
33564252 GCTTAGACATAGAATGAACTCCGTATGGGTAAGCCATCCCATGAAACGAGCGTGCGAGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAG
* *
33564317 CCGCCCGGAGAGGCAGAATGCACAAGCCGGGGACCGACCTAGTCCCCCTTGCATGCTGTCGATCC
66 CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGACCGACCTAGTCCCCCTTGCATGCTGTCGATCC
* *
33564382 TGCTACCGCAACCCTTGATCCGATTCGA
131 TGCTACCACAACCCATGATCCGATTCGA
* * * * *
33564410 TCTTAGAC-TGGGAATGAACTCCGTATTCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCA
* ** * * * * * *
33564474 GCCGACCGGAGAGGCATAATGCGCAAGCCGGGGATTG-GCTCGGTCCCCTTCTGCATGTTGTTGG
65 GCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGACCGACCT-AGTCCCCCT-TGCATGCTGTCGA
* * * * * *
33564538 TCTTGCTGCCACAACCCATGGTCCGGTTGGG
128 TCCTGCTACCACAACCCATGATCCGATTCGA
* * * *
33564569 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGACAC-AGGCGTACGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGA-GCGTGCGGGCACTCA
* * *
33564633 GCTGGCTGGAGAGGCAGAATGCGCAA
65 GCCGACCGGAGAGGCAGAATGCGCAA
33564659 CTTGGGGTTT
Statistics
Matches: 202, Mismatches: 42, Indels: 9
0.80 0.17 0.04
Matches are distributed among these distances:
157 3 0.01
158 92 0.46
159 106 0.52
160 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAG
CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGACCGACCTAGTCCCCCTTGCATGCTGTCGATCC
TGCTACCACAACCCATGATCCGATTCGA
Found at i:33565498 original size:26 final size:26
Alignment explanation
Indices: 33565460--33565512 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
33565450 GGCTCAAAAT
33565460 CTTAGACTGGGAAAGAACTCCATATG
1 CTTAGACTGGGAAAGAACTCCATATG
* *
33565486 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAAAGAACTCCATATG
33565512 C
1 C
33565513 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.21, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCATATG
Found at i:33566052 original size:159 final size:159
Alignment explanation
Indices: 33565682--33566129 Score: 424
Period size: 159 Copynumber: 2.8 Consensus size: 159
33565672 AGCTCCGTAT
* ** * * *
33565682 GCTTAGACATAGAATGAACTCCGTATGTGTAAGCCATCCCATGAA-ACGAGCGTGCGAGCACTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAACA-GAGCGTACGGGCACTCA
* * * * * *
33565746 GCCGGTCGGAGAGGCAGAATGCATAAGCCAGGGACTGGCCTAGTCCCCCT-TGCATGCTATCGAT
65 GCCGGCCGGAGAGGCAGAATGCACAAGCCGGGGATTGGCCTGGTCCCCCTCTGCATGCTACCGAT
** *
33565810 CCTACTACCACAACCCTTGATCCGATTCGA
130 CCTACTACCACAACCCACGATCCGACTCGA
* * * * * * *
33565840 TCTTATAC-TGGGAATGAACTCCGTATTCTTAAGTCAACCCATTAA-ATGAGCGTACGGGCACTG
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAACA-GAGCGTACGGGCACTC
* * * * * *
33565903 AACCGACCGGAGAGGCATAATGCACAAGCCGGGGATTGGCCTGGTCCCCCTCTGCATGTTGCCGG
64 AGCCGGCCGGAGAGGCAGAATGCACAAGCCGGGGATTGGCCTGGTCCCCCTCTGCATGCTACCGA
* * * * *
33565968 TCCTGCTGCCACAACCCACGATCCGGCTGGG
129 TCCTACTACCACAACCCACGATCCGACTCGA
* *
33565999 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGACACAG-GCGTACGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGA-ACAGAGCGTACGGGCACTCA
* * * * * * *
33566063 GCTGGCTGGAGAGGCAGAATGCGCAA-CTTGGGGTTTGGCCTGGTCCCCC-CTGCGTGCTATCGA
65 GCCGGCCGGAGAGGCAGAATGCACAAGC-CGGGGATTGGCCTGGTCCCCCTCTGCATGCTACCGA
33566126 TCCT
129 TCCT
33566130 GTTGTCGCAA
Statistics
Matches: 229, Mismatches: 55, Indels: 12
0.77 0.19 0.04
Matches are distributed among these distances:
157 1 0.00
158 105 0.46
159 119 0.52
160 3 0.01
161 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.26, T:0.21
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAACAGAGCGTACGGGCACTCAG
CCGGCCGGAGAGGCAGAATGCACAAGCCGGGGATTGGCCTGGTCCCCCTCTGCATGCTACCGATC
CTACTACCACAACCCACGATCCGACTCGA
Found at i:33567353 original size:616 final size:614
Alignment explanation
Indices: 33566180--33567411 Score: 1945
Period size: 616 Copynumber: 2.0 Consensus size: 614
33566170 ATGAACTCTG
* * **
33566180 TATGCTTAGACTAGGGATGAACTCCGTATGCTTAAGTCAACCCACAAAAGGAGCATGCGGGCGGG
1 TATGCTTAGACTAGGGATAAACTCCGTATGCCTAAGTCAACCCACAAAACAAGCAT---GGCGGG
** * *
33566245 CGCTCAATCGACCAGAGAGGCAAGATGCGTAAACCGGGGATCGAACGAGTGGTAGGTGGGTTCAA
63 AACTCAACCGACCAGAGAGGCAAGATGCGTAAACCGGGAATCGAACGAGTGGTAGGTGGGTTCAA
*
33566310 GCACATCTTTAATTTTTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
128 GCACATCTTTAATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* *
33566375 TTAAGCCTTCATGTGAAGTTTCGTGGCAAGACGACCCGTTTTCTATTTTTCATGATTTTTGAAAC
193 CTAAGCCTTCATGTGAAGTTTCGTGGCAAGACGACCCGTGTTCTATTTTTCATGATTTTTGAAAC
* * *
33566440 TTTTTACGGTTTGAGGTTTTTTAAAAATTTTTTAGATATAGTTTTGTCCCCAAATTTGGTAGAGG
258 TTTTTACGGTTTGAGGTTTTTTAAAAATTTTTTAGAAAGAGTTTTATCCCCAAATTTGGTAGAGG
33566505 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGGAGAAGATT
323 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGGAGAAGATT
* * *
33566570 TTGTGACCGTTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTAT
388 TTGTGACCGTTTAAAAAAAGTGTCCCCATGTCAAACACTTTAATGGCTACTGGCAGCAAACCTAT
33566635 AAAATCTCAAATGCTCTTTAAGGGGGTATGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
453 AAAATCTCAAATGCTCTTTAAGGGGGTATGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* *
33566700 ATAAGGGCCGAGTACCAGCACCCATCACACATCATGTGCACACA-CCCCCGGCCCCCCTATCGCC
518 ATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCACACACCCCCCGGCCCCCCAATCGCC
*
33566764 GGAACCCCTAATAACG-CTGGTTAGGCTCTCCA
583 GGAACCCCCAATAACGTC-GGTTAGGCTCTCCA
* * *
33566796 TATGCTTAGGCTGGGGATAAACTCCGTATGCCTAAGTCAACCCACAAAACAAGCAT-GTGGGAAC
1 TATGCTTAGACTAGGGATAAACTCCGTATGCCTAAGTCAACCCACAAAACAAGCATGGCGGGAAC
* * *
33566860 TCAACCGACCAGAGAGGCAGGATGCGTAAATCGGGAATCGAACGGGTGGTAGGTGGGTTCAAGCA
66 TCAACCGACCAGAGAGGCAAGATGCGTAAACCGGGAATCGAACGAGTGGTAGGTGGGTTCAAGCA
33566925 CATCTTCGT-ATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCC
131 CATCTT--TAATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCC
* * *
33566989 TAAGCCTTCATGTGAAGTTTCGTGGCAATATGACCCGTGTTCTATTTTTCATGATTTTTTAAACT
194 TAAGCCTTCATGTGAAGTTTCGTGGCAAGACGACCCGTGTTCTATTTTTCATGATTTTTGAAACT
** *
33567054 TTTTGTGGTTTG-GGATTTTTTAAAATTTTTTTAGAAAGAGTTTTATCCCCAAATTTGGTAGAGG
259 TTTTACGGTTTGAGG-TTTTTTAAAAATTTTTTAGAAAGAGTTTTATCCCCAAATTTGGTAGAGG
* * *
33567118 TGATCCTTGTATTTTTTTTTTTGGC-TGGCATAAAAAAATTCAGCTAAAAACTCAAAGTGGAGAT
323 TGATCCTTGTA---TTTTTGTTGGCAT-GCACAAAAAAATTCAGCTAAAAACTCAAAGTGGAGAA
33567182 GATTTTGTGACCGTTTAAAAAAAGTGTCCCCATGTCAAACACTTTAATGGCTACTGGCAGCAAAC
384 GATTTTGTGACCGTTTAAAAAAAGTGTCCCCATGTCAAACACTTTAATGGCTACTGGCAGCAAAC
*
33567247 CTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
449 CTATAAAATCTCAAATGCTCTTTAAGGGGGTATGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* *
33567312 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCAAT
514 CAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCACACACCCCCCGGCCCCCCAAT
* * **
33567377 CGCTGGAGCCCCCAATGCCGTCGGTTAGGCTCTCC
579 CGCCGGAACCCCCAATAACGTCGGTTAGGCTCTCC
33567412 GACGATGCTC
Statistics
Matches: 565, Mismatches: 42, Indels: 17
0.91 0.07 0.03
Matches are distributed among these distances:
612 73 0.13
613 180 0.32
614 1 0.00
615 1 0.00
616 266 0.47
617 43 0.08
618 1 0.00
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (614 bp):
TATGCTTAGACTAGGGATAAACTCCGTATGCCTAAGTCAACCCACAAAACAAGCATGGCGGGAAC
TCAACCGACCAGAGAGGCAAGATGCGTAAACCGGGAATCGAACGAGTGGTAGGTGGGTTCAAGCA
CATCTTTAATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCCTA
AGCCTTCATGTGAAGTTTCGTGGCAAGACGACCCGTGTTCTATTTTTCATGATTTTTGAAACTTT
TTACGGTTTGAGGTTTTTTAAAAATTTTTTAGAAAGAGTTTTATCCCCAAATTTGGTAGAGGTGA
TCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGGAGAAGATTTTG
TGACCGTTTAAAAAAAGTGTCCCCATGTCAAACACTTTAATGGCTACTGGCAGCAAACCTATAAA
ATCTCAAATGCTCTTTAAGGGGGTATGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
AGGGCCAAGTACCAGCACCCATCACACATCATGTGCACACACCCCCCGGCCCCCCAATCGCCGGA
ACCCCCAATAACGTCGGTTAGGCTCTCCA
Found at i:33567537 original size:26 final size:26
Alignment explanation
Indices: 33567499--33567551 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
33567489 GGCTCAAAAT
*
33567499 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
33567525 CTTAGACAT-GGAATGACCTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
33567551 C
1 C
33567552 CTAAACCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:33568567 original size:26 final size:26
Alignment explanation
Indices: 33568526--33568578 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33568516 CCAGTCTGAT
33568526 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
33568552 CTTAGACT-GGAGATGAATTCCGTATG
1 CTTAGACTGGGA-ATGAACTCCGTATG
33568578 C
1 C
33568579 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 3 0.12
26 22 0.88
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:33568853 original size:159 final size:159
Alignment explanation
Indices: 33568551--33568856 Score: 344
Period size: 159 Copynumber: 1.9 Consensus size: 159
33568541 AACTCCGTAT
* * * *
33568551 GCTTAGACTGGAGATGAATTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCACTGAG
1 GCTTAGACTGGAGATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTGAG
* * * * * ** * * *
33568616 CCGGTCGGAGAGGCATAATGCGTAGGTTGGAGATCGGCTCGATCCCCCTCTGCGTGCTGCCGGTC
66 CCGGCCCGAGAGGCAGAATGCGCAAGCGGGAGATCGGCTCGATCCCCCCCTACGTGCTGCCGATC
* *
33568681 CCGCTGCCACAACCCTCAGTCCGACTGGG
131 CCACTACCACAACCCTCAGTCCGACTGGG
* *** * * *
33568710 GCTTGGACATGGA-ATGAACTCCATATGCCTAAGCCAACCCATGGAACGAGCGTTCGGGTACTTA
1 GCTTAGAC-TGGAGATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTGA
* * * *
33568774 GCCGGCCCGAGAGGCAGAATGCGCAAGCGGGGGATTGGCTCGGTCCCCCCCTACGTGCTGTCGAT
65 GCCGGCCCGAGAGGCAGAATGCGCAAGCGGGAGATCGGCTCGATCCCCCCCTACGTGCTGCCGAT
*
33568839 CCTACTACCACAACCCTC
130 CCCACTACCACAACCCTC
33568857 CATCCCCCCT
Statistics
Matches: 118, Mismatches: 28, Indels: 2
0.80 0.19 0.01
Matches are distributed among these distances:
159 114 0.97
160 4 0.03
ACGTcount: A:0.22, C:0.31, G:0.29, T:0.19
Consensus pattern (159 bp):
GCTTAGACTGGAGATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTGAG
CCGGCCCGAGAGGCAGAATGCGCAAGCGGGAGATCGGCTCGATCCCCCCCTACGTGCTGCCGATC
CCACTACCACAACCCTCAGTCCGACTGGG
Found at i:33568879 original size:41 final size:41
Alignment explanation
Indices: 33568819--33568897 Score: 104
Period size: 41 Copynumber: 1.9 Consensus size: 41
33568809 TGGCTCGGTC
* *
33568819 CCCCCCTACGTGCTGTCGATCCTACTACCACAACCCTCCAT
1 CCCCCCTACATGCTATCGATCCTACTACCACAACCCTCCAT
* * **
33568860 CCCCCCTGCATGCTATCGATCCTGCTGTCACAACCCTC
1 CCCCCCTACATGCTATCGATCCTACTACCACAACCCTC
33568898 GGTCCAGTCC
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
41 32 1.00
ACGTcount: A:0.18, C:0.48, G:0.11, T:0.23
Consensus pattern (41 bp):
CCCCCCTACATGCTATCGATCCTACTACCACAACCCTCCAT
Found at i:33570017 original size:26 final size:26
Alignment explanation
Indices: 33569988--33570040 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
33569978 CCGATCTGAT
33569988 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
* *
33570014 CTTATACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCCGTATG
33570040 C
1 C
33570041 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:33570371 original size:26 final size:26
Alignment explanation
Indices: 33570330--33570382 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
33570320 TCGATCCGAT
*
33570330 CTTAGACTGGAAATGAACTCTGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
**
33570356 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
33570382 C
1 C
33570383 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:33571443 original size:26 final size:25
Alignment explanation
Indices: 33571398--33571447 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
33571388 GGTCAAATCC
33571398 TAGACTGGGAATAACCCCATATGCT
1 TAGACTGGGAATAACCCCATATGCT
* *
33571423 TAGACTGGGGATGAACTCCATATGC
1 TAGACTGGGAAT-AACCCCATATGC
33571448 CTAAGTCATC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 11 0.50
26 11 0.50
ACGTcount: A:0.30, C:0.22, G:0.24, T:0.24
Consensus pattern (25 bp):
TAGACTGGGAATAACCCCATATGCT
Found at i:33571812 original size:26 final size:26
Alignment explanation
Indices: 33571774--33571826 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33571764 CTGGTCCAAT
33571774 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
33571800 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
33571826 C
1 C
33571827 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:33572153 original size:157 final size:158
Alignment explanation
Indices: 33571799--33572199 Score: 404
Period size: 157 Copynumber: 2.5 Consensus size: 158
33571789 AACTCCGTAT
**
33571799 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* ** * * *
33571864 CCAGCCGGAGAGGCAGAATGCGTAAGCCGGGGACTGGCCCGATCCCCCCTGCGTGCTGTCGATCC
66 CCAGCCGGAGAGGCAGAATGCGCAAGCCGAAGACTGGCCCGATCCCCCCTACATGCTGCCGATCC
* *
33571929 TGTTGCCACAACCTTCGGTCCGGTCCAA
131 TGCTGCCACAACCCTCGGTCCGGTCCAA
* * ** * * * *
33571957 TCTTAGAC-TGGGAATGAATTCCATATGCCTAAGTTAACCCACGAAATGAGTGTGTGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCA
* * *
33572021 GCC-GATCGGAGAGGCATAATGCGCAGGCCGAAGA-TCGGCCCGAT-CCCCCTACATGCTGCCTG
65 GCCAG-CCGGAGAGGCAGAATGCGCAAGCCGAAGACT-GGCCCGATCCCCCCTACATGCTGCC-G
* ***
33572083 -T-CTCGCTGCCACAACCCTCGGTCTGG-CTGGG
127 ATCCT-GCTGCCACAACCCTCGGTCCGGTC-CAA
* * * ** *
33572114 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTTAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
33572179 CC-GACCGGAGAGGCAGAATGC
66 CCAG-CCGGAGAGGCAGAATGC
33572200 ATAAGCCGGG
Statistics
Matches: 196, Mismatches: 40, Indels: 15
0.78 0.16 0.06
Matches are distributed among these distances:
156 3 0.02
157 105 0.54
158 88 0.45
ACGTcount: A:0.23, C:0.30, G:0.29, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
CCAGCCGGAGAGGCAGAATGCGCAAGCCGAAGACTGGCCCGATCCCCCCTACATGCTGCCGATCC
TGCTGCCACAACCCTCGGTCCGGTCCAA
Found at i:33572299 original size:158 final size:156
Alignment explanation
Indices: 33571800--33572299 Score: 490
Period size: 158 Copynumber: 3.2 Consensus size: 156
33571790 ACTCCGTATG
*
33571800 CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGC
* * *
33571865 C-AGCCGGAGAGGCAGAATGCGTAAGCCGGGGACTGGCCCGATCCCCCCTGCGTGCTGTCGATCC
66 CGA-CCGGAGAGGCAGAATGCGTAAGCCGGGGA-TGGCCCGAT-CCCCCTACGTGCTGCCGTTCC
* * * **
33571929 TGTTGCCACAACCTTCGGTCCGGTCCAAT
128 TGCTGCCACAACCCTCGGTCTGGTCGGAT
* * ** * * * *
33571958 CTTAGAC-TGGGAATGAATTCCATATGCCTAAGTTAACCCACGAAATGAGTGTGTGGGCACTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * * * ** *
33572022 CCGATCGGAGAGGCATAATGCGCAGGCCGAAGATCGGCCCGATCCCCCTACATGCTGCC-TGT-C
65 CCGACCGGAGAGGCAGAATGCGTAAGCCGGGGAT-GGCCCGATCCCCCTACGTGCTGCCGT-TCC
**
33572085 TCGCTGCCACAACCCTCGGTCTGG-CTGGGG
128 T-GCTGCCACAACCCTCGGTCTGGTC-GGAT
* * * ** *
33572115 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTTAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGC
* ** * *
33572180 CGACCGGAGAGGCAGAATGCATAAGCCGGGGATAGGCTTGGTCCCTACTACGTGCTGCCGTTCCT
66 CGACCGGAGAGGCAGAATGCGTAAGCCGGGGAT-GGCCCGATCCC-CCTACGTGCTGCCGTTCCT
* * * *
33572245 GCTACCGCAACCCTCCGTTTGGTCGGAT
129 GCTGCCACAACCCTCGGTCTGGTCGGAT
33572273 CTTAGAC-TGGGAATGAACTCCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
33572300 TTAGACTGGG
Statistics
Matches: 272, Mismatches: 58, Indels: 24
0.77 0.16 0.07
Matches are distributed among these distances:
156 3 0.01
157 121 0.44
158 143 0.53
159 5 0.02
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (156 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGC
CGACCGGAGAGGCAGAATGCGTAAGCCGGGGATGGCCCGATCCCCCTACGTGCTGCCGTTCCTGC
TGCCACAACCCTCGGTCTGGTCGGAT
Found at i:33572309 original size:26 final size:26
Alignment explanation
Indices: 33572273--33572325 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
33572263 TTGGTCGGAT
*
33572273 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
**
33572299 CTTAGACTGGGGTTGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
33572325 C
1 C
33572326 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:33572919 original size:11 final size:11
Alignment explanation
Indices: 33572903--33572929 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
33572893 CGGTTAGGCT
33572903 CTCCGGTGATG
1 CTCCGGTGATG
33572914 CTCCGGTGATG
1 CTCCGGTGATG
33572925 CTCCG
1 CTCCG
33572930 ACGATGGTGC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.07, C:0.33, G:0.33, T:0.26
Consensus pattern (11 bp):
CTCCGGTGATG
Found at i:33573043 original size:26 final size:26
Alignment explanation
Indices: 33573005--33573057 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
33572995 GGCTCAAACT
33573005 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
33573031 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
33573057 C
1 C
33573058 CAAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:33573393 original size:25 final size:26
Alignment explanation
Indices: 33573347--33573398 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
33573337 CCGGTTGAAA
33573347 CTTAGACTGGTAATGAACTCCGTATG
1 CTTAGACTGGTAATGAACTCCGTATG
*
33573373 CTTAGACTGG-GATGAACTCCGTATG
1 CTTAGACTGGTAATGAACTCCGTATG
33573398 C
1 C
33573399 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 15 0.60
26 10 0.40
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGTAATGAACTCCGTATG
Found at i:33573450 original size:13 final size:13
Alignment explanation
Indices: 33573432--33573456 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
33573422 GGCGCTCAAC
33573432 CGATCGGAGAGGT
1 CGATCGGAGAGGT
33573445 CGATCGGAGAGG
1 CGATCGGAGAGG
33573457 CAGAATGTGC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.16, G:0.48, T:0.12
Consensus pattern (13 bp):
CGATCGGAGAGGT
Found at i:33573575 original size:26 final size:26
Alignment explanation
Indices: 33573537--33573589 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33573527 CCAATCAGAT
33573537 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
33573563 CTTAGACAT-GGAATGAACTTCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
33573589 C
1 C
33573590 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:33573930 original size:26 final size:26
Alignment explanation
Indices: 33573879--33573931 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
33573869 CCGATCCGAT
**
33573879 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
33573905 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
33573931 C
1 C
33573932 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:33575052 original size:13 final size:13
Alignment explanation
Indices: 33575034--33575059 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
33575024 GGCGCTCAGT
33575034 CGATCGGAGAGGC
1 CGATCGGAGAGGC
33575047 CGATCGGAGAGGC
1 CGATCGGAGAGGC
33575060 ATAATGCACA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.23, G:0.46, T:0.08
Consensus pattern (13 bp):
CGATCGGAGAGGC
Found at i:33575368 original size:26 final size:25
Alignment explanation
Indices: 33575331--33575381 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 25
33575321 GGTCTGATCT
33575331 TTAGACTGGAATGAACTCCGTATGC
1 TTAGACTGGAATGAACTCCGTATGC
33575356 TTAGACATGGAATGAACTCCGTATGC
1 TTAGAC-TGGAATGAACTCCGTATGC
33575382 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 6 0.24
26 19 0.76
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (25 bp):
TTAGACTGGAATGAACTCCGTATGC
Found at i:33575859 original size:26 final size:26
Alignment explanation
Indices: 33575829--33575881 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
33575819 TCGGTCCGTT
*
33575829 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
33575855 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
33575881 C
1 C
33575882 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:33576591 original size:26 final size:26
Alignment explanation
Indices: 33576562--33576614 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33576552 GGCTCAAACT
33576562 CTTAGAC-TGTGAATGAACTCCATATG
1 CTTAGACATG-GAATGAACTCCATATG
*
33576588 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCATATG
33576614 C
1 C
33576615 CAAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:33576939 original size:25 final size:26
Alignment explanation
Indices: 33576893--33576942 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 26
33576883 CCGGTTGAAT
33576893 CTTAGACTGGTAATGAACTCCGTATG
1 CTTAGACTGGTAATGAACTCCGTATG
*
33576919 CTTAGACTGG-GATGAACTCCGTAT
1 CTTAGACTGGTAATGAACTCCGTAT
33576943 ACCTAAGTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 13 0.57
26 10 0.43
ACGTcount: A:0.26, C:0.20, G:0.24, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGTAATGAACTCCGTATG
Found at i:33577116 original size:26 final size:25
Alignment explanation
Indices: 33577077--33577126 Score: 91
Period size: 26 Copynumber: 2.0 Consensus size: 25
33577067 CTGATCGGAT
33577077 CTTAGACTGGAATGAACTCCGTATA
1 CTTAGACTGGAATGAACTCCGTATA
33577102 CTTAGACATGGAATGAACTCCGTAT
1 CTTAGAC-TGGAATGAACTCCGTAT
33577127 GCCTAAGCCA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.28
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTCCGTATA
Found at i:33577123 original size:184 final size:184
Alignment explanation
Indices: 33576814--33577179 Score: 493
Period size: 184 Copynumber: 2.0 Consensus size: 184
33576804 CGTTCAGCCA
* * * * *
33576814 ATCGGAGGGGCAGAATGCGTAAGCTAGGGATCGGCCCGGTCTCCCCTGCGTGCTGTCGCAACCCT
1 ATCGGAGAGGCAGAATGCGTAAGCCAGGGATCGGCCCGGTCCCCCCTACGTGCTGCCGCAACCCT
* * * *
33576879 CGGTCCGGTTGAATCTTAGACTGGTAATGAACTCCGTATGCTTAGACTGGGATGAACTCCGTATA
66 CGGTCCGATCGAATCTTAGACTGGTAATGAACTCCGTATACTTAGACTGGAATGAACTCCGTATA
* * *
33576944 CCTAAGTCAACCCATGAAACAAGCGTATGGGCGCTCAACCGGTCGGAGAGGCTG
131 CCTAAGCCAACCCACGAAACAAGCGTACGGGCGCTCAACCGGTCGGAGAGGCTG
* * * *
33576998 ATCGGAGAGGCAGAATGCTTAAGCCGGGGATCGGCTCGG-CACCCCCTATGTGCTGCCGCAACCC
1 ATCGGAGAGGCAGAATGCGTAAGCCAGGGATCGGCCCGGTC-CCCCCTACGTGCTGCCGCAACCC
* * *
33577062 TTGGTCTGATCGGATCTTAGACTGG-AATGAACTCCGTATACTTAGACATGGAATGAACTCCGTA
65 TCGGTCCGATCGAATCTTAGACTGGTAATGAACTCCGTATACTTAGAC-TGGAATGAACTCCGTA
* * * *
33577126 TGCCTAAGCCAACCCACGAAACGAGCGTACGGGGGCTCAGCCGGTCGGAGAGGC
129 TACCTAAGCCAACCCACGAAACAAGCGTACGGGCGCTCAACCGGTCGGAGAGGC
33577180 AGAATGCGTA
Statistics
Matches: 157, Mismatches: 23, Indels: 4
0.85 0.12 0.02
Matches are distributed among these distances:
183 22 0.14
184 135 0.86
ACGTcount: A:0.23, C:0.27, G:0.30, T:0.20
Consensus pattern (184 bp):
ATCGGAGAGGCAGAATGCGTAAGCCAGGGATCGGCCCGGTCCCCCCTACGTGCTGCCGCAACCCT
CGGTCCGATCGAATCTTAGACTGGTAATGAACTCCGTATACTTAGACTGGAATGAACTCCGTATA
CCTAAGCCAACCCACGAAACAAGCGTACGGGCGCTCAACCGGTCGGAGAGGCTG
Found at i:33577396 original size:159 final size:159
Alignment explanation
Indices: 33577112--33577407 Score: 344
Period size: 159 Copynumber: 1.9 Consensus size: 159
33577102 CTTAGACATG
* ** *
33577112 GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGGGCTCAGCCGGTCGGAGA
1 GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTACGGGGGCTCAGCCGACCAGAGA
* * * * * * **
33577177 GGCAGAATGCGTAAGCTGGGGACCGGCCCAATCTCCCCCTGCGTGCTATCGATCCTGCTACTGCA
66 GGCAGAATGCGCAAGCCGGGGACCGACCCAATCTCCCCCTACGTGCTAGCGATCCCGCTACCACA
33577242 ACCCTCAGTCTGATCCAATCTTAGACTCA
131 ACCCTCAGTCTGATCCAATCTTAGACTCA
* * * * * * *
33577271 GAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAACGTTCGGGTGCTGAGCTGACCAGAGA
1 GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTACGGGGGCTCAGCCGACCAGAGA
* * * * *
33577336 GGCATAATGCGCAAGCCGGGGATCGACCCAGTC-CCCATCTACGTGCT-GCAGGTCCCGCTACCA
66 GGCAGAATGCGCAAGCCGGGGACCGACCCAATCTCCC-CCTACGTGCTAGC-GATCCCGCTACCA
33577399 CAACCCTCA
129 CAACCCTCA
33577408 CTCCAACTGG
Statistics
Matches: 111, Mismatches: 24, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
158 4 0.04
159 107 0.96
ACGTcount: A:0.25, C:0.32, G:0.25, T:0.18
Consensus pattern (159 bp):
GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTACGGGGGCTCAGCCGACCAGAGA
GGCAGAATGCGCAAGCCGGGGACCGACCCAATCTCCCCCTACGTGCTAGCGATCCCGCTACCACA
ACCCTCAGTCTGATCCAATCTTAGACTCA
Found at i:33577690 original size:13 final size:13
Alignment explanation
Indices: 33577674--33577707 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
33577664 TCAGTCGATC
* *
33577674 GGAGAGGTCGGTT
1 GGAGAGGCCGGCT
33577687 GGAGAGGCCGGCT
1 GGAGAGGCCGGCT
33577700 GGAGAGGC
1 GGAGAGGC
33577708 ATAATGTGGA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.18, C:0.15, G:0.56, T:0.12
Consensus pattern (13 bp):
GGAGAGGCCGGCT
Found at i:33578008 original size:171 final size:167
Alignment explanation
Indices: 33577702--33578418 Score: 572
Period size: 171 Copynumber: 4.4 Consensus size: 167
33577692 GGCCGGCTGG
* * * * * * * *
33577702 AGAGGCATAATGTGGAAGCCAGGGATCAGGCCAGTCCCCCTCTGCGTGCTGTTGATCCCACTACC
1 AGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCTCTGCGTGCTGTCGATCCTACT-CC
* *
33577767 GGTCCTGCTGCCACAACCTTCGGTCCAA-CAGGGGCTTAGACATGGAATGAAGTCCGTATGCCTA
65 -GTCC-GCTGCCACAACCCTCGGTCCAATC-GGGGCTTAGACATGGAATGAACTCCGTATGCCTA
*
33577831 AGCCAACCCATGAAACGAGCGTGCGGGAGCTCAACCGGCCAGA
127 AGCCAACCCACGAAACGAGCGTGCGGGA-CTCAACCGGCC-GA
33577874 A-AGGCAGAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCTCTGCGTGCTGTCGATCCTACTACC
1 AGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCTCTGCGTGCTGTCGATCCTACT-CC
* *
33577938 AGTCCAGTTGCCACAACCCTCGGTCCAATCGGGGCTTACACATGGAATGAACTCCGTATGCCTAA
65 -GTCC-GCTGCCACAACCCTCGGTCCAATCGGGGCTTAGACATGGAATGAACTCCGTATGCCTAA
* * * * * * *
33578003 GCCAACCCACGAAATGAGTGTACCGGCATTCAGCCGGTCGA
128 GCCAACCCACGAAACGAGCGT-GCGGGACTCAACCGGCCGA
* * * * * *
33578044 AGGGGTAGAATGCACAAGCTGGGGAT-AGGCTCGGTCCCCC-CTACGTGC--T--AT-CTA-TCC
1 AGAGGCAGAATGCGCAAGCCGGGGATCA-GCCCGGTCCCCCTCTGCGTGCTGTCGATCCTACTCC
* * * **
33578101 -T--GCTGCCGCAACCCTCAGTCCGATC-GATCTTAGAC-TAGGAATGAACTCCGTATGCCTAAG
65 GTCCGCTGCCACAACCCTCGGTCCAATCGGGGCTTAGACAT-GGAATGAACTCCGTATGCCTAAG
* * * * * * **
33578161 TCAACCCACAAAATGAGCGTGTGGGCGCTGAGTCGGCCGA
129 CCAACCCACGAAACGAGCGTGCGGG-ACTCAACCGGCCGA
* * * * * *
33578201 AGAGGCATAATGCGTAAGCCGAGGATCAGCCTGATCCCCCTCTGCGTGCTGTC-A---GAC-CCG
1 AGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCTCTGCGTGCTGTCGATCCTACTCCG
*** ** *
33578261 --C-C-GCCACAACCCTCGGTTTGATTAGGGCTTAGACATGGAATGAACTGTC-TATGCCTAAGC
66 TCCGCTGCCACAACCCTCGGTCCAATCGGGGCTTAGACATGGAATGAACT-CCGTATGCCTAAGC
* * * *
33578321 CAACCCATGAAACGGGCGTGCGGGCACTCAACCGTCCGG
130 CAACCCACGAAACGAGCGTGCGGG-ACTCAACCGGCCGA
* * **
33578360 AGGGGTAGAATGCGCAAGCCGGGGATCA-CCCGG-CCCCC-CTGCGTGCTACCGATCCTACT
1 AGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCTCTGCGTGCTGTCGATCCTACT
33578419 GCTGTAACCC
Statistics
Matches: 435, Mismatches: 88, Indels: 55
0.75 0.15 0.10
Matches are distributed among these distances:
156 13 0.03
157 90 0.21
158 47 0.11
159 83 0.19
160 5 0.01
161 2 0.00
163 2 0.00
164 1 0.00
165 3 0.01
166 2 0.00
168 1 0.00
170 11 0.03
171 169 0.39
172 6 0.01
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.18
Consensus pattern (167 bp):
AGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCTCTGCGTGCTGTCGATCCTACTCCG
TCCGCTGCCACAACCCTCGGTCCAATCGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCC
AACCCACGAAACGAGCGTGCGGGACTCAACCGGCCGA
Found at i:33578473 original size:26 final size:26
Alignment explanation
Indices: 33578444--33578494 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
33578434 CTGGTCCGAT
33578444 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
*
33578470 CTTAGACTAGGGATGAACTCTGTAT
1 CTTAGACTAGGGATGAACTCCGTAT
33578495 ACCGAAGTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:33579201 original size:26 final size:26
Alignment explanation
Indices: 33579163--33579213 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
33579153 GGCTCAAAAT
33579163 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
33579189 CTTAGACAT-GGAATGAACTCCGTAT
1 CTTAGAC-TGGGAATGAACTCCGTAT
33579214 ACCTAAGCCA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:33579692 original size:158 final size:158
Alignment explanation
Indices: 33579189--33579694 Score: 394
Period size: 159 Copynumber: 3.2 Consensus size: 158
33579179 ACTCCGTATG
* * * * * * * * * *
33579189 CTTAGACAT-GGAATGAACTCCGTATACCTAAGCCAACCCACGAAACGAGCATGTGGGCGCCCAA
1 CTTAGAC-TGGGAATGAACTCTGTATGCTTAAGCCAACCAATGAAACAAGCGTGCGGTCGCTCAA
* * * * * *
33579253 CCGGTTGGAGAGGTAGAATGCGTAAGCCGGGGTTCGGCCCGATCCCTCACTATGTGCTGTCAATC
65 CCGGTCGGAGAGGCAGAATGCGTAATCCGGGGATCGGCCC-ATCCCTCACTGTGTGCTGTCGATC
* * ** * **
33579318 CTATTACCGCAACCCTTGGTCTGATCCAAT
129 CTACTGCCGCAACCCTCAGTCCGATCTGAT
* * * * *
33579348 CTTAGACTGGGAATGAACTCTGTATGCATAAGTCAACCAATGAGACAAGCGTGCGGTCGCTGAGC
1 CTTAGACTGGGAATGAACTCTGTATGCTTAAGCCAACCAATGAAACAAGCGTGCGGTCGCTCAAC
* * ** * ** * * * *
33579413 TGGCCAAAGAGGCATAATGCGTAAGT-CGGGGATCAACCCAATCCCCCTCTGCGTGCTGTCGGTC
66 CGGTCGGAGAGGCAGAATGCGTAA-TCCGGGGATCGGCCC-ATCCCTCACTGTGTGCTGTCGATC
** * * * *
33579477 CCGCTGCCACAACTCTCAGTCC-AACTGAGG
129 CTACTGCCGCAACCCTCAGTCCGATCTGA-T
* ** * * *
33579507 CTTAGACAT-GGAATGAACACCCTATGCTTAAGCCAACCCATGAAACAGGCGTGCGGGT-GTTCA
1 CTTAGAC-TGGGAATGAACTCTGTATGCTTAAGCCAACCAATGAAACAAGCGTGC-GGTCGCTCA
*
33579570 ACCGGTCGGAGAGGCAGAATGCGCAATCCGGGGATCGGCCCATTCCCTC-CTGTGTGCTGTCGAT
64 ACCGGTCGGAGAGGCAGAATGCGTAATCCGGGGATCGGCCCA-TCCCTCACTGTGTGCTGTCGAT
* *
33579634 CCTACTGCCGCCACCCTCAGTCCGGTCTGAT
128 CCTACTGCCGCAACCCTCAGTCCGATCTGAT
* *
33579665 CATAGACTGGGAGTGAACTCTGTATGCTTA
1 CTTAGACTGGGAATGAACTCTGTATGCTTA
33579695 GAATGGGGAA
Statistics
Matches: 258, Mismatches: 80, Indels: 19
0.72 0.22 0.05
Matches are distributed among these distances:
157 1 0.00
158 60 0.23
159 193 0.75
160 4 0.02
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCTGTATGCTTAAGCCAACCAATGAAACAAGCGTGCGGTCGCTCAAC
CGGTCGGAGAGGCAGAATGCGTAATCCGGGGATCGGCCCATCCCTCACTGTGTGCTGTCGATCCT
ACTGCCGCAACCCTCAGTCCGATCTGAT
Found at i:33581466 original size:26 final size:26
Alignment explanation
Indices: 33581428--33581480 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
33581418 GGCTCAAAAT
33581428 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
33581454 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
33581480 C
1 C
33581481 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:33582994 original size:158 final size:160
Alignment explanation
Indices: 33582649--33582994 Score: 371
Period size: 159 Copynumber: 2.2 Consensus size: 160
33582639 GTGGCTCAAA
* * * * * *
33582649 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACTCACGAAACGAGTGTACGAGTACTGA
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTACGAGCACTCA
* ** * * * * * *
33582714 GCCGATTGGAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCACTGCGTGCTGCTGGT
66 GCCAACCGAAAAGGCAGAATGCGCAAGCCCGGGATCGGCCCGATCCCCCACTGCGTGCTGCTGAT
**
33582779 CCCGCTGCCACAAACCTCGGTCCAGCTGGG
131 CCCGCTGCCACAAACCTCGGTCCAGCTCCG
* * * *
33582809 A-CTTAGACAT-GGAATGAACTCTC-TATGCCTAAGCCAACCCACAAAACGGGCGTGCGTGCGCT
1 ATCTTAGAC-TGGGAATGAACTC-CGTATGCCTAAGCCAACCCACAAAACGAGCGTACGAGCACT
* *
33582871 CAGCCAACCGAAAAGGCAGAATGCGCATGCCCGGGATCGGCCCGATCCCCC-CTGCGTGCT-ATC
64 CAGCCAACCGAAAAGGCAGAATGCGCAAGCCCGGGATCGGCCCGATCCCCCACTGCGTGCTGCT-
* * * * *
33582934 GATTCTGCTGCCGCAACCCTCGGTCTAG-TCCG
128 GATCCCGCTGCCACAAACCTCGGTCCAGCTCCG
33582966 ATCTTAGACTGGGAATGAACTCCGTATGC
1 ATCTTAGACTGGGAATGAACTCCGTATGC
33582995 TTAGACTGGG
Statistics
Matches: 152, Mismatches: 28, Indels: 14
0.78 0.14 0.07
Matches are distributed among these distances:
157 6 0.04
158 54 0.36
159 89 0.59
160 3 0.02
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (160 bp):
ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTACGAGCACTCA
GCCAACCGAAAAGGCAGAATGCGCAAGCCCGGGATCGGCCCGATCCCCCACTGCGTGCTGCTGAT
CCCGCTGCCACAAACCTCGGTCCAGCTCCG
Found at i:33582997 original size:26 final size:26
Alignment explanation
Indices: 33582968--33583020 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
33582958 CTAGTCCGAT
* *
33582968 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAACGAACTCCATATG
*
33582994 CTTAGACTGGGGACGAACTCCATATG
1 CTTAGACTGGGAACGAACTCCATATG
33583020 C
1 C
33583021 ATAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAACGAACTCCATATG
Found at i:33584065 original size:160 final size:158
Alignment explanation
Indices: 33583715--33584161 Score: 501
Period size: 160 Copynumber: 2.8 Consensus size: 158
33583705 AACTCTGTTT
* * * *
33583715 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCACTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTGAG
* * * * * * *
33583780 CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATTGGCCCGGTCCCCCTCTATGTACTGTCGATC
66 CCGACCGGAGAGGCAGAATGCACAAGCTGGGGATCGACCC-GTCCCCCTCTGTGTGCTATCGATC
*
33583845 CTGCCACCACAACCGTCAGTCTGATCTGA
130 CCGCCACCACAACCGTCAGTCTGATCTGA
* * * *
33583874 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGGTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTGA
* * *
33583938 GCCGACCGGAGAGGCATAATACACAAGCTGGGGGATCGACCCAGTCCCCCTCTGTGTGCTATCGG
65 GCCGACCGGAGAGGCAGAATGCACAAGCT-GGGGATCGACCC-GTCCCCCTCTGTGTGCTATCGA
* *
33584003 TCCCGCTACCACAACTC-TCAGTCTGA-CTGGG
128 TCCCGCCACCACAAC-CGTCAGTCTGATCT-GA
* * * * *
33584034 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTACGGGTGCTCG-
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCT-GA
* * * *
33584098 GCCAACCGAAGAGGCAGAATGCACTAGCTGGGGATC-AGCCCGATCCCCC-CTGTGTGCTACCGA
65 GCCGACCGGAGAGGCAGAATGCACAAGCTGGGGATCGA-CCCG-TCCCCCTCTGTGTGCTATCGA
33584161 T
128 T
33584162 TCTACTACAG
Statistics
Matches: 242, Mismatches: 38, Indels: 17
0.81 0.13 0.06
Matches are distributed among these distances:
158 16 0.07
159 97 0.40
160 126 0.52
161 3 0.01
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTGAG
CCGACCGGAGAGGCAGAATGCACAAGCTGGGGATCGACCCGTCCCCCTCTGTGTGCTATCGATCC
CGCCACCACAACCGTCAGTCTGATCTGA
Found at i:33584598 original size:26 final size:26
Alignment explanation
Indices: 33584560--33584612 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
33584550 CCAGTCTGAT
33584560 CTTAGACAGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
*
33584586 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
33584612 C
1 C
33584613 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Found at i:33584947 original size:26 final size:26
Alignment explanation
Indices: 33584903--33584955 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
33584893 TCGATCTGAT
33584903 CTTAGACTAGGAATAAACTCCGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
* * * *
33584929 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
33584955 C
1 C
33584956 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATAAACTCCGTATG
Found at i:33588297 original size:26 final size:26
Alignment explanation
Indices: 33588261--33588313 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
33588251 CCGATCCAAT
* *
33588261 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
*
33588287 CTTAAACTGGGGATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
33588313 C
1 C
33588314 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:33588861 original size:316 final size:317
Alignment explanation
Indices: 33588287--33588946 Score: 761
Period size: 316 Copynumber: 2.1 Consensus size: 317
33588277 ACTCTGTATG
* * ** * ** *
33588287 CTTAAACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCATACGGGTGCTTAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCATACAGGCACTGAGC
** *
33588352 CGACCGGAGAGGCAGAATCCGTAACCCGGGGATCAGCCTGATCCCCTTCTACATGCTATCGGTCT
66 CGACCGGAGAGGCAGAATCCGTAACCCAAGGATCAGCCCGATCCCCTTCTACATGCTATCGGTCT
* *
33588417 CATTGCCACAACCCTTGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
131 CACTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
* * * * * * * *
33588482 CCCATGTAATGGGCGTGCGGGTGCTCAACCGGCTGAAGAAGCAGAATGCGCAAGTCGGGGATCGG
196 CCCACGAAACGAGCGTGCGAGCGCTCAACCGGCTGAAGAAGCAGAATGCACAAGTCAGGGATCGG
* * **
33588547 CCCAAT-CCCCCTACGTGCTACCGATCCTGCCATCGCAACCCTCAGTTCGGTCTGAT
261 CCCAATCCCCCCTACGTGCTACCGATCCTGCCACCGCAACCCTCAGTCCGGTCCAAT
* * * *
33588603 CTTAGACTGGGAAGGAACTCCGTATGCCTAAGTCAACTCACAAAATGAGCGTTCAGGCACTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCATACAGGCACTGAGC
* * * * * *
33588668 CGACCGGAGAGGCATAATGCGTAAGCCAAGGATC-GACCCGATACTCC-TCTGCGTGCTATCGGT
66 CGACCGGAGAGGCAGAATCCGTAACCCAAGGATCAG-CCCGAT-CCCCTTCTACATGCTATCGGT
* * * * *
33588731 CTCGCTGCCATAACCCTCGTTTTGGTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCC
129 CTCACTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCC
* * * * *
33588796 AACCCACGAAACGAGCGTGCGAGCGCTCAGCCAG-TCGGAGAGGCAGAGTGCACAAGTCAGGGAT
194 AACCCACGAAACGAGCGTGCGAGCGCTCAACCGGCT-GAAGAAGCAGAATGCACAAGTCAGGGAT
* * ** * * * *
33588860 CGGCCCGATCCCCCCTGCGTGCTGTCGATCTTGCTACCGTAACCCTCGGTCCGGTCCAAT
258 CGGCCCAATCCCCCCTACGTGCTACCGATCCTGCCACCGCAACCCTCAGTCCGGTCCAAT
* * *
33588920 CTTAGATTGGAAATGAACTCAGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
33588947 TTAGACTAGG
Statistics
Matches: 283, Mismatches: 57, Indels: 7
0.82 0.16 0.02
Matches are distributed among these distances:
315 2 0.01
316 216 0.76
317 65 0.23
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (317 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCATACAGGCACTGAGC
CGACCGGAGAGGCAGAATCCGTAACCCAAGGATCAGCCCGATCCCCTTCTACATGCTATCGGTCT
CACTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
CCCACGAAACGAGCGTGCGAGCGCTCAACCGGCTGAAGAAGCAGAATGCACAAGTCAGGGATCGG
CCCAATCCCCCCTACGTGCTACCGATCCTGCCACCGCAACCCTCAGTCCGGTCCAAT
Found at i:33588867 original size:159 final size:155
Alignment explanation
Indices: 33588299--33588907 Score: 447
Period size: 159 Copynumber: 3.9 Consensus size: 155
33588289 TAAACTGGGG
* * * * * * * *
33588299 ATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCATACGGGTGCTTAGCCGACCGGAGAGG
1 ATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTGCGAGCGCTCAGCCG-CCGGAGAGG
* * ** * * * * * ** *
33588364 CAGAATCCGTAACCCGGGGATCAGCCTGATCCCCTTCTACATGCTATCGGTCTCATTGCCACAAC
65 CAGAATGCGCAAGTCAGGGATCGGCCCGATCCCC--CTGCGTGCTATCGGTCTCGCTGCCATAAC
* * *
33588429 CCTTGGTCTGGCTGGGGCTTAGACATGGA
128 CC-TCGTTTGGTTGGGGCTTAGACATGGA
* * * * * * * * *
33588458 ATGAACTCCCTATGCCTAAGCCAACCCATGTAATGGGCGTGCGGGTGCTCAACCGGCTGAAGAAG
1 ATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTGCGAGCGCTCAGCC-GCCGGAGAGG
* * * * *
33588523 CAGAATGCGCAAGTCGGGGATCGGCCCAATCCCCCTACGTGCTA-CCG-ATC-CTGCCATCGCAA
65 CAGAATGCGCAAGTCAGGGATCGGCCCGATCCCCCTGCGTGCTATCGGTCTCGCTGCCAT---AA
* **
33588585 CCCTCAGTTCGGTCT-GATCTTAGAC-TGGGA
127 CCCTC-GTTTGGT-TGGGGCTTAGACAT-GGA
* * * * * * * *
33588615 AGGAACTCCGTATGCCTAAGTCAACTCACAAAATGAGCGTTC-AGGCACTGAGCCGACCGGAGAG
1 ATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTGCGA-GCGCTCAGCCG-CCGGAGAG
* * * * * *
33588679 GCATAATGCGTAAGCCAAGGATCGACCCGATACTCCTCTGCGTGCTATCGGTCTCGCTGCCATAA
64 GCAGAATGCGCAAGTCAGGGATCGGCCCGAT-C-CCCCTGCGTGCTATCGGTCTCGCTGCCATAA
33588744 CCCTCGTTTTGGTTGGGGCTTAGACATGGA
127 CCCTCG-TTTGGTTGGGGCTTAGACATGGA
* *
33588774 ATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGCTCAGCCAGTCGGAGAGG
1 ATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTGCGAGCGCTCAGCC-GCCGGAGAGG
* * * * * * *
33588839 CAGAGTGCACAAGTCAGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCTTGCTACCGTAACC
65 CAGAATGCGCAAGTCAGGGATCGGCCCGAT-CCCCCTGCGTGCTATCGGTCTCGCTGCCATAACC
33588904 CTCG
129 CTCG
33588908 GTCCGGTCCA
Statistics
Matches: 347, Mismatches: 84, Indels: 39
0.74 0.18 0.08
Matches are distributed among these distances:
154 5 0.01
155 2 0.01
156 5 0.01
157 97 0.28
158 35 0.10
159 188 0.54
160 6 0.02
161 2 0.01
162 7 0.02
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.20
Consensus pattern (155 bp):
ATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTGCGAGCGCTCAGCCGCCGGAGAGGC
AGAATGCGCAAGTCAGGGATCGGCCCGATCCCCCTGCGTGCTATCGGTCTCGCTGCCATAACCCT
CGTTTGGTTGGGGCTTAGACATGGA
Found at i:33589561 original size:159 final size:157
Alignment explanation
Indices: 33589153--33589593 Score: 453
Period size: 159 Copynumber: 2.8 Consensus size: 157
33589143 AACTCTGTAC
*
33589153 GCTTAGACATGGAATGAAC-CCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCA
1 GCTTAGACATGGAATGAACTCCC-TATGCCTAAGCTAACCCACGAAACGAGCGTACGGGTGCTCA
* * * *
33589217 ATCAGCCAGAGAGGTAGAATGTGCAAGCCGAGGA-CTGACCC-GATCCTACCCTGCGTGCTGTCG
65 ACCAGCCGGAGAGGTAGAATGTGCAAGCCG-GGATC-GACCCAG-TCC-CCCCTACGTGCTGTCG
* *
33589280 ATCCTGCTACCACAACCCTCAGTCCGATCCGA
126 ATCCCGCTACCACAACCCTCAGTCCGATCAGA
* ** * * ** *
33589312 TCTTAGAC-TGGGAATGAACTCTGTATGCCTAAG-TCAACCCACAAAACGAGCGTTCGGGCACTG
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCT-AACCCACGAAACGAGCGTACGGGTGCTC
* * * * * * *
33589375 AGCCAGTCGGACAGGCATAATGTGCAAGCCAGGGATCGACCCAGTCCCCTCCTATGTGCTGTCGG
64 AACCAGCCGGAGAGGTAGAATGTGCAAGCC-GGGATCGACCCAGTCCCC-CCTACGTGCTGTCGA
* *
33589440 TCCCGCTACCACAACCCTCAGTCCG-GCTAGG
127 TCCCGCTACCACAACCCTCAGTCCGATC-AGA
* *
33589471 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCTAACCCACGAAACGGGCGTACAGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCTAACCCACGAAACGAGCGTACGGGTGCTCAA
* * ** * *
33589536 CCGGCCGGAGAGGTAGAATGCGCAAGCCGGGGATCGACTTAGTCCCCCTTGCGTGCTG
66 CCAGCCGGAGAGGTAGAATGTGCAAGCC-GGGATCGACCCAGTCCCCCCTACGTGCTG
33589594 CCAATCCAGC
Statistics
Matches: 225, Mismatches: 47, Indels: 21
0.77 0.16 0.07
Matches are distributed among these distances:
158 11 0.05
159 208 0.92
160 6 0.03
ACGTcount: A:0.25, C:0.31, G:0.26, T:0.18
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCTAACCCACGAAACGAGCGTACGGGTGCTCAA
CCAGCCGGAGAGGTAGAATGTGCAAGCCGGGATCGACCCAGTCCCCCCTACGTGCTGTCGATCCC
GCTACCACAACCCTCAGTCCGATCAGA
Found at i:33590048 original size:26 final size:26
Alignment explanation
Indices: 33590010--33590062 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
33590000 CTGGTCTAAT
* *
33590010 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAAATCCATATG
33590036 CTTAGACAT-GGAATGAAATCCATATG
1 CTTAGAC-TGGGAATGAAATCCATATG
33590062 C
1 C
33590063 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCATATG
Found at i:33590444 original size:159 final size:156
Alignment explanation
Indices: 33590035--33590537 Score: 438
Period size: 158 Copynumber: 3.2 Consensus size: 156
33590025 AACTCCGTAT
*
33590035 GCTTAGACATGGAATGAAATCCATATGCCTAAGCCAACGCACGAAACGAGCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAAATCCATATGCCTAAGCCAAC-CACGAAACGAGCGTACGGGCGCTC-A
* * * * * ** *
33590100 CCGATCGGACAGGTAGAATGCGCAATCCAAGGATCGGCCCGGTCTGCCCTGCGTGCGATCGATCC
64 GCGATCGAACAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCCTGCGTGCTATCGATCC
* * ** * *
33590165 TGCTGCTGCAACCCTCGGTCTGGTCCTA
129 CGCTACCACAACCCTCGGTCTCGTACTA
* * * * ** * * * *
33590193 TCTTAGACAAGAAATGAATTCTGTATGCCTAAGTCAACCCACGAAACGAGCATACGGGCGTTGAG
1 GCTTAGACATGGAATGAAATCCATATGCCTAAGCCAA-CCACGAAACGAGCGTACGGGCGCTCAG
* * * * * *
33590258 CAAGCCGAAGAGGCATAATGCGCAAGCCAGGGATCGACCCGGTCCCCCTCTGCGTGCTACCGATC
65 CGA-TCGAACAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCC-CTGCGTGCTATCGATC
* *
33590323 CCGCTACCACAACCCTTGGT-TCG-ACTGGG
128 CCGCTACCACAACCCTCGGTCTCGTACT--A
* * *
33590352 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAGCCATGAAACGAGCGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAAATCCATATGCCTAAGCCAA-CCACGAAACGAGCGTACGGGCGCTCAG
* * * * * *
33590417 TCGATCGAACAGGCAGAATACGTAAGCCAGGGATTGGCTCGATCCCCCCTGCGTGCTATCGATCT
65 -CGATCGAACAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCCTGCGTGCTATCGATCC
* * * * *
33590482 TGCTGCCGCAACCCTCGGTC-CGATCCGA
129 CGCTACCACAACCCTCGGTCTCG-TACTA
* *
33590510 TCTTAGAC-TGGGAATGAACTCCATATGC
1 GCTTAGACAT-GGAATGAAATCCATATGC
33590538 TTAGACTGGG
Statistics
Matches: 269, Mismatches: 66, Indels: 20
0.76 0.19 0.06
Matches are distributed among these distances:
157 6 0.02
158 142 0.53
159 118 0.44
160 3 0.01
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (156 bp):
GCTTAGACATGGAATGAAATCCATATGCCTAAGCCAACCACGAAACGAGCGTACGGGCGCTCAGC
GATCGAACAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCCTGCGTGCTATCGATCCCG
CTACCACAACCCTCGGTCTCGTACTA
Found at i:33590547 original size:26 final size:26
Alignment explanation
Indices: 33590511--33590562 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
33590501 CCGATCCGAT
33590511 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
33590537 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
33590563 TCTAAGTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:33590983 original size:353 final size:354
Alignment explanation
Indices: 33590329--33590984 Score: 831
Period size: 353 Copynumber: 1.9 Consensus size: 354
33590319 GATCCCGCTA
* * * *
33590329 CCACAACCCTTGGTTCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAGCCAT
1 CCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
** *
33590394 GAAACGAGCGTACGGGCGCTCAGTCGATCGAACAGGCAGAATACGTAAGCCAGGGATTGGCTCGA
66 GAAACGAGCGTAC-GGCGCTCAGTCGATCGAACAGGCAGAATACACAAGCCAGGGATCGGCTCGA
* * * *
33590459 TCCCCCCTGCGTGCTATCGATCTTGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAA
130 TCCCCCCTGCGTGCTACCGATCCTGCTACAGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAA
* * * **
33590524 TGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGTCTAAGTCAACCTATGAAACGAGCAT
195 TGAACTCCAAATACTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCTACAAAACGAGCAT
** * * *
33590589 GCGGGTGCTTAGCCAGCCAGACAGGCATAATGCGTAAGCTGGGAATCAGCTCGATCCCACTCTGC
260 GCGGACGCTCAGCCAGCCAGACAGGCAGAATGCGCAAGCTGGGAATCAGCTCGATCCCACTCTGC
33590654 GTGTTGTCGATGCCCCTACCAGTCCTGCTG
325 GTGTTGTCGATGCCCCTACCAGTCCTGCTG
*
33590684 CCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAC
1 CCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
* * ** * *
33590749 GAAATGAGCGTGA-GG-GCTTAG-CTGA-CGGGGCAGGCAGAATGCACAAGCCGGGGATCGGC-C
66 GAAACGAGCGT-ACGGCGCTCAGTC-GATC-GAACAGGCAGAATACACAAGCCAGGGATCGGCTC
* * * * *
33590809 TGATCCTCCCTGCGTGCTACCGATCCTGCTACATCAACCCTCGGTCTGGTCCGATCTTAGATTGG
128 -GATCCCCCCTGCGTGCTACCGATCCTGCTACAGCAACCCTCGGTCCGATCCGATCTTAGACTGG
*
33590874 GAATGAACTCCAAATACTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAATCC-ACAAAACGA
192 GAATGAACTCCAAATACTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAA-CCTACAAAACGA
** * * * * *
33590938 GTGTGTGGACGCTCAGTC-GACCAGAGAGGTAGGATGCGCAAGCTGGG
256 GCATGCGGACGCTCAGCCAG-CCAGACAGGCAGAATGCGCAAGCTGGG
33590985 GATCGAAGGG
Statistics
Matches: 254, Mismatches: 41, Indels: 14
0.82 0.13 0.05
Matches are distributed among these distances:
352 4 0.02
353 175 0.69
354 4 0.02
355 70 0.28
356 1 0.00
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (354 bp):
CCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
GAAACGAGCGTACGGCGCTCAGTCGATCGAACAGGCAGAATACACAAGCCAGGGATCGGCTCGAT
CCCCCCTGCGTGCTACCGATCCTGCTACAGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAAT
GAACTCCAAATACTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCTACAAAACGAGCATG
CGGACGCTCAGCCAGCCAGACAGGCAGAATGCGCAAGCTGGGAATCAGCTCGATCCCACTCTGCG
TGTTGTCGATGCCCCTACCAGTCCTGCTG
Found at i:33591676 original size:26 final size:26
Alignment explanation
Indices: 33591647--33591699 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
33591637 CCAGTCCGAT
33591647 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
** *
33591673 CTTAGACTGGGGTTGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
33591699 C
1 C
33591700 CTATGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:33594150 original size:26 final size:26
Alignment explanation
Indices: 33594121--33594173 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33594111 CCGATCCGAT
33594121 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
33594147 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCCGTATG
33594173 C
1 C
33594174 CTATGCCAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:33594983 original size:26 final size:26
Alignment explanation
Indices: 33594932--33594984 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
33594922 CAGATTCGAT
*
33594932 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
33594958 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
33594984 C
1 C
33594985 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:33595736 original size:132 final size:131
Alignment explanation
Indices: 33595516--33595772 Score: 487
Period size: 132 Copynumber: 2.0 Consensus size: 131
33595506 GCCAGATGGC
33595516 CAGAGCGGACAATACCTCACAAGGGTGTGAACCGTGGCGGAAGGCTGATCTGGGACGCCGGAAGG
1 CAGAGCGGACAATACCTCACAAGGGTGTGAACCGTGGCGGAAGGCTGATCTGGGACGCCGGAAGG
33595581 GTGAATGCCCGGGTCCCGGAGCCGCGCGGGTTCGGAGCTTAAGTCTCGACCCGTGACAAGTGGTA
66 GTGAATGCCCGGGTCCCGGAGCCGCGCGGGTTCGGAGCTTAAGTCTCGACCCGTGACAAGTGGTA
33595646 T
131 T
33595647 CAGAGCGGACAATACCTCACAAGGGTGTGAACCGTGGCAGGAAGGCTGATCTGGGACGCCGGAAG
1 CAGAGCGGACAATACCTCACAAGGGTGTGAACCGTGGC-GGAAGGCTGATCTGGGACGCCGGAAG
* *
33595712 GGTGAATGCCCTGGTCCCGGAGCCGCGCGGGTTCGGAGCTTGAGTCTCGACCCGTGACAAG
65 GGTGAATGCCCGGGTCCCGGAGCCGCGCGGGTTCGGAGCTTAAGTCTCGACCCGTGACAAG
33595773 AATGGTTTAG
Statistics
Matches: 123, Mismatches: 2, Indels: 1
0.98 0.02 0.01
Matches are distributed among these distances:
131 38 0.31
132 85 0.69
ACGTcount: A:0.21, C:0.26, G:0.37, T:0.16
Consensus pattern (131 bp):
CAGAGCGGACAATACCTCACAAGGGTGTGAACCGTGGCGGAAGGCTGATCTGGGACGCCGGAAGG
GTGAATGCCCGGGTCCCGGAGCCGCGCGGGTTCGGAGCTTAAGTCTCGACCCGTGACAAGTGGTA
T
Found at i:33597729 original size:741 final size:742
Alignment explanation
Indices: 33595776--33597738 Score: 3504
Period size: 741 Copynumber: 2.6 Consensus size: 742
33595766 TGACAAGAAT
* *
33595776 GGTTTAGGGTTGGCTCTGATACCACTTGTCACGGGTCGAGACTTAAGCTCCGAACCCGCACGGCT
1 GGTTTAGGGCTGGCTCTGATACCACTTGTCACGGGTCGAGACTTAAGCTCCGAACCCGCGCGGCT
*
33595841 CCGGGACCCGGGCATTCACCCTTCCGACGTCCCAGATCAGCCTTCCGCCACGGTTCACACCCTTG
66 CCGGGACCCGGGCATTCACCCTTCCGGCGTCCCAGATCAGCCTTCCGCCACGGTTCACACCCTTG
*
33595906 TGAGGTATTGTCCGCTCTGG--CCATCTGGCCTCACGGTTTTGTCCTACAAAAGGCGCCTCACAA
131 TGAGGTATTGTCCGCTCTGGCCCCCTCTGGCCTCACGGTTTTGTCCTACAAAAGGCGCCTCACAA
*
33595969 GGCGGAGATGGTGTGAACCCTTTTATACCCCAGGGACCTTCCTATTATGTTCGATGTGGGATTCA
196 GGCGGAGATGGTGTGAACCCTTTTATACCCCAGTGACCTTCCTATTATGTTCGATGTGGGATTCA
*
33596034 GGACTCCCCCTTAGGTCCGTGACATTCTCCCGCACCCAACCTCGTGACGCCCTCGTCACGGAGGC
261 GGACTCTCCCTTAGGTCCGTGACATTCTCCCGCACCCAACCTCGTGACGCCCTCGTCACGGAGGC
33596099 CGGCCACCCTGCCTACCTCCCTCGAGGCGCTCGGCGTGGATCGAACGGTTTAGGGCTGGCTCTGA
326 CGGCCACCCTGCCTACCTCCCTCGAGGCGCTCGGCGTGGATCGAACGGTTTAGGGCTGGCTCTGA
*
33596164 TACCACTTGTCACGGGTCGAGACTCAAGCTCCGAACCCGCACGGCTCCGGGACCCGGGCATTCAC
391 TACCACTTGTCACGGGTCGAGACTCAAGCTCCGAACCCGCACGGCTCCAGGACCCGGGCATTCAC
* * ** *
33596229 CCTTCCGGCTTCCC-GAATTAGCCTTTTTGCCACGGTTCACACTCTTGTGAGGTATTGTCCGCTC
456 CCTTCCGGCGTCCCAG-ATCAGCCTTCCTGCCACGGTTCACACCCTTGTGAGGTATTGTCCGCTC
33596293 TGGCCCCTCTGGCCTCACGGTTTTATCCTACAAAAGGCACCTCACAAGGCGGAGATGGTGTGAAC
520 TGGCCCCTCTGGCCTCACGGTTTTATCCTACAAAAGGCACCTCACAAGGCGGAGATGGTGTGAAC
* *
33596358 CCTTTTATACCCCAGGGACCCTCCTATTATGTTCGATGTGGGATTGATGACTCCCCCTTAGGTCC
585 CCTTTTATACCCCAGGGACCCTCCTATTATGTTCGATGTGGGATTCAGGACTCCCCCTTAGGTCC
*
33596423 GTGACATTCTCCCACACCCAACCTCTTGACGCCCTCGTCACGGAGGCCGGCCACCCTGCCTACCT
650 GTGACATTCTCCCACACCCAACCTCGTGACGCCCTCGTCACGGAGGCCGGCCACCCTGCCTACCT
*
33596488 CCCTCGAGGTGCTCGGCGTGGATCGAAC
715 CCCTCGAGGCGCTCGGCGTGGATCGAAC
33596516 GGTTTAGGGCTGGCTCTGATACCACTTGTCACGGGTCGAGACTTAAGCTCCGAACCCGCGCGGCT
1 GGTTTAGGGCTGGCTCTGATACCACTTGTCACGGGTCGAGACTTAAGCTCCGAACCCGCGCGGCT
33596581 CCGGGACCCGGGCATTCACCCTTCCGGCGTCCCAGATCAGCCTTCCTGCCACGGTTCACACCCTT
66 CCGGGACCCGGGCATTCACCCTTCCGGCGTCCCAGATCAGCCTTCC-GCCACGGTTCACACCCTT
* *
33596646 GTGAGGTATTGTCCGCTCTGGCCCCCCCTGACCTCACGGTTTTGTCCTACAAAAGGCGCCTCACA
130 GTGAGGTATTGTCCGCTCTGGCCCCCTCTGGCCTCACGGTTTTGTCCTACAAAAGGCGCCTCACA
*
33596711 AGGCGGAGATGGTGTGAACCCTTTTATACCCCAGTGACCCTCCTATTATGTTCGATGTGGGATTC
195 AGGCGGAGATGGTGTGAACCCTTTTATACCCCAGTGACCTTCCTATTATGTTCGATGTGGGATTC
* * *
33596776 AGGACTCTTCCTTAGGTCCGTGATATTCTCCTGCACCCAACCTCGTGACGCCCTCGTCACGGAGG
260 AGGACTCTCCCTTAGGTCCGTGACATTCTCCCGCACCCAACCTCGTGACGCCCTCGTCACGGAGG
* * *
33596841 CTGGCCACCCTGCCTACCTCCCTCGAGGTGCTTGGCGTGGATCGAACGGTTTAGGGCTGGCTCTG
325 CCGGCCACCCTGCCTACCTCCCTCGAGGCGCTCGGCGTGGATCGAACGGTTTAGGGCTGGCTCTG
* *
33596906 ATACCACTTGTCACGGGTCGAGACTCAAGCTCCGAAACCGCGCGGCTCCAGGACCCGGGCATTCA
390 ATACCACTTGTCACGGGTCGAGACTCAAGCTCCGAACCCGCACGGCTCCAGGACCCGGGCATTCA
33596971 CCCTTCCGGCGTCCCAGATCAGCCTTCCTGCCACGGTTCACACCCTTGTGAGGTATTGTCCGCTC
455 CCCTTCCGGCGTCCCAGATCAGCCTTCCTGCCACGGTTCACACCCTTGTGAGGTATTGTCCGCTC
* *
33597036 TGGCCCC-CTTGG-CTCACGGTTTTGTCCTACAAAAGGCGCCTCACAAGGCGGAGATGGTGTGAA
520 TGGCCCCTC-TGGCCTCACGGTTTTATCCTACAAAAGGCACCTCACAAGGCGGAGATGGTGTGAA
* * *
33597099 CCTTTTTATACCCCAGTGACCTTCCTATTATGTTCGATGTGGGATTCAGGACTCCCCCTTAGGTC
584 CCCTTTTATACCCCAGGGACCCTCCTATTATGTTCGATGTGGGATTCAGGACTCCCCCTTAGGTC
*
33597164 CGTGACATTCTCCCGCACCCAACCTCGTGACGCCCTCGTCACGGAGGCCGGCCACCCTGCCTACC
649 CGTGACATTCTCCCACACCCAACCTCGTGACGCCCTCGTCACGGAGGCCGGCCACCCTGCCTACC
33597229 TCCCTCGAGGCGCTCGGCGTGGATCGAAC
714 TCCCTCGAGGCGCTCGGCGTGGATCGAAC
33597258 GGTTTAGGGCTGGCTCTGATACCACTTGTCACGGGTCGAGACTTAAGCTCCGAACCCGCGCGGCT
1 GGTTTAGGGCTGGCTCTGATACCACTTGTCACGGGTCGAGACTTAAGCTCCGAACCCGCGCGGCT
* * * *
33597323 CCGGGACCCGAGCATTCATCATTCCGGCGTCCCAGATCAGCCTTCCGCCGCGGTTCACACCCTTG
66 CCGGGACCCGGGCATTCACCCTTCCGGCGTCCCAGATCAGCCTTCCGCCACGGTTCACACCCTTG
33597388 TGAGGTATTGTCCGCTCTGGCCCCCTCTGGCCTCACGGTTTTGTCCTACAAAAGGCGCCTCACAA
131 TGAGGTATTGTCCGCTCTGGCCCCCTCTGGCCTCACGGTTTTGTCCTACAAAAGGCGCCTCACAA
33597453 GGCGGAGATGGTGTGAACCCTTTTATACCCCAGTGACCTTCCTATTATGTTCGATGTGGGATTCA
196 GGCGGAGATGGTGTGAACCCTTTTATACCCCAGTGACCTTCCTATTATGTTCGATGTGGGATTCA
* *
33597518 GGACTCTCCCTTGGGTCCGTGACATTCTCCCGCACCCAACCTCGTGACGCCCTCGTCATGGAGGC
261 GGACTCTCCCTTAGGTCCGTGACATTCTCCCGCACCCAACCTCGTGACGCCCTCGTCACGGAGGC
*
33597583 CGGCCACCCTGCCTACCTCCATCGAGGCGCTCGGCGTGGATCGAACGGTTTAGGGCTGGCTCTGA
326 CGGCCACCCTGCCTACCTCCCTCGAGGCGCTCGGCGTGGATCGAACGGTTTAGGGCTGGCTCTGA
33597648 TACCACTTGTCACGGGTCGAGACTCAAGCTCCGAACCCGCACGGCTCCAGGACCCGGGCATTCAC
391 TACCACTTGTCACGGGTCGAGACTCAAGCTCCGAACCCGCACGGCTCCAGGACCCGGGCATTCAC
33597713 CCTTCCGGCGTCCCAGATCAGCCTTC
456 CCTTCCGGCGTCCCAGATCAGCCTTC
33597739 TGAGGCGCCT
Statistics
Matches: 1167, Mismatches: 51, Indels: 9
0.95 0.04 0.01
Matches are distributed among these distances:
740 108 0.09
741 394 0.34
742 309 0.26
743 355 0.30
744 1 0.00
ACGTcount: A:0.17, C:0.35, G:0.25, T:0.23
Consensus pattern (742 bp):
GGTTTAGGGCTGGCTCTGATACCACTTGTCACGGGTCGAGACTTAAGCTCCGAACCCGCGCGGCT
CCGGGACCCGGGCATTCACCCTTCCGGCGTCCCAGATCAGCCTTCCGCCACGGTTCACACCCTTG
TGAGGTATTGTCCGCTCTGGCCCCCTCTGGCCTCACGGTTTTGTCCTACAAAAGGCGCCTCACAA
GGCGGAGATGGTGTGAACCCTTTTATACCCCAGTGACCTTCCTATTATGTTCGATGTGGGATTCA
GGACTCTCCCTTAGGTCCGTGACATTCTCCCGCACCCAACCTCGTGACGCCCTCGTCACGGAGGC
CGGCCACCCTGCCTACCTCCCTCGAGGCGCTCGGCGTGGATCGAACGGTTTAGGGCTGGCTCTGA
TACCACTTGTCACGGGTCGAGACTCAAGCTCCGAACCCGCACGGCTCCAGGACCCGGGCATTCAC
CCTTCCGGCGTCCCAGATCAGCCTTCCTGCCACGGTTCACACCCTTGTGAGGTATTGTCCGCTCT
GGCCCCTCTGGCCTCACGGTTTTATCCTACAAAAGGCACCTCACAAGGCGGAGATGGTGTGAACC
CTTTTATACCCCAGGGACCCTCCTATTATGTTCGATGTGGGATTCAGGACTCCCCCTTAGGTCCG
TGACATTCTCCCACACCCAACCTCGTGACGCCCTCGTCACGGAGGCCGGCCACCCTGCCTACCTC
CCTCGAGGCGCTCGGCGTGGATCGAAC
Found at i:33597738 original size:371 final size:371
Alignment explanation
Indices: 33595776--33597738 Score: 3434
Period size: 371 Copynumber: 5.3 Consensus size: 371
33595766 TGACAAGAAT
* *
33595776 GGTTTAGGGTTGGCTCTGATACCACTTGTCACGGGTCGAGACTTAAGCTCCGAACCCGCACGGCT
1 GGTTTAGGGCTGGCTCTGATACCACTTGTCACGGGTCGAGACTCAAGCTCCGAACCCGCACGGCT
*
33595841 CCGGGACCCGGGCATTCACCCTTCCGACGTCCCAGATCAGCCTTCCGCCACGGTTCACACCCTTG
66 CCGGGACCCGGGCATTCACCCTTCCGGCGTCCCAGATCAGCCTTCCGCCACGGTTCACACCCTTG
*
33595906 TGAGGTATTGTCCGCTCTGG--CCATCTGGCCTCACGGTTTTGTCCTACAAAAGGCGCCTCACAA
131 TGAGGTATTGTCCGCTCTGGCCCCCTCTGGCCTCACGGTTTTGTCCTACAAAAGGCGCCTCACAA
*
33595969 GGCGGAGATGGTGTGAACCCTTTTATACCCCAGGGACCTTCCTATTATGTTCGATGTGGGATTCA
196 GGCGGAGATGGTGTGAACCCTTTTATACCCCAGTGACCTTCCTATTATGTTCGATGTGGGATTCA
33596034 GGACTCCCCCTTAGGTCCGTGACATTCTCCCGCACCCAACCTCGTGACGCCCTCGTCACGGAGGC
261 GGACTCCCCCTTAGGTCCGTGACATTCTCCCGCACCCAACCTCGTGACGCCCTCGTCACGGAGGC
33596099 CGGCCACCCTGCCTACCTCCCTCGAGGCGCTCGGCGTGGATCGAAC
326 CGGCCACCCTGCCTACCTCCCTCGAGGCGCTCGGCGTGGATCGAAC
33596145 GGTTTAGGGCTGGCTCTGATACCACTTGTCACGGGTCGAGACTCAAGCTCCGAACCCGCACGGCT
1 GGTTTAGGGCTGGCTCTGATACCACTTGTCACGGGTCGAGACTCAAGCTCCGAACCCGCACGGCT
* * ** *
33596210 CCGGGACCCGGGCATTCACCCTTCCGGCTTCCC-GAATTAGCCTTTTTGCCACGGTTCACACTCT
66 CCGGGACCCGGGCATTCACCCTTCCGGCGTCCCAG-ATCAGCC-TTCCGCCACGGTTCACACCCT
* *
33596274 TGTGAGGTATTGTCCGCTCTGG-CCCCTCTGGCCTCACGGTTTTATCCTACAAAAGGCACCTCAC
129 TGTGAGGTATTGTCCGCTCTGGCCCCCTCTGGCCTCACGGTTTTGTCCTACAAAAGGCGCCTCAC
* *
33596338 AAGGCGGAGATGGTGTGAACCCTTTTATACCCCAGGGACCCTCCTATTATGTTCGATGTGGGATT
194 AAGGCGGAGATGGTGTGAACCCTTTTATACCCCAGTGACCTTCCTATTATGTTCGATGTGGGATT
* * * *
33596403 GATGACTCCCCCTTAGGTCCGTGACATTCTCCCACACCCAACCTCTTGACGCCCTCGTCACGGAG
259 CAGGACTCCCCCTTAGGTCCGTGACATTCTCCCGCACCCAACCTCGTGACGCCCTCGTCACGGAG
*
33596468 GCCGGCCACCCTGCCTACCTCCCTCGAGGTGCTCGGCGTGGATCGAAC
324 GCCGGCCACCCTGCCTACCTCCCTCGAGGCGCTCGGCGTGGATCGAAC
* *
33596516 GGTTTAGGGCTGGCTCTGATACCACTTGTCACGGGTCGAGACTTAAGCTCCGAACCCGCGCGGCT
1 GGTTTAGGGCTGGCTCTGATACCACTTGTCACGGGTCGAGACTCAAGCTCCGAACCCGCACGGCT
33596581 CCGGGACCCGGGCATTCACCCTTCCGGCGTCCCAGATCAGCCTTCCTGCCACGGTTCACACCCTT
66 CCGGGACCCGGGCATTCACCCTTCCGGCGTCCCAGATCAGCCTTCC-GCCACGGTTCACACCCTT
* *
33596646 GTGAGGTATTGTCCGCTCTGGCCCCCCCTGACCTCACGGTTTTGTCCTACAAAAGGCGCCTCACA
130 GTGAGGTATTGTCCGCTCTGGCCCCCTCTGGCCTCACGGTTTTGTCCTACAAAAGGCGCCTCACA
*
33596711 AGGCGGAGATGGTGTGAACCCTTTTATACCCCAGTGACCCTCCTATTATGTTCGATGTGGGATTC
195 AGGCGGAGATGGTGTGAACCCTTTTATACCCCAGTGACCTTCCTATTATGTTCGATGTGGGATTC
** * *
33596776 AGGACTCTTCCTTAGGTCCGTGATATTCTCCTGCACCCAACCTCGTGACGCCCTCGTCACGGAGG
260 AGGACTCCCCCTTAGGTCCGTGACATTCTCCCGCACCCAACCTCGTGACGCCCTCGTCACGGAGG
* * *
33596841 CTGGCCACCCTGCCTACCTCCCTCGAGGTGCTTGGCGTGGATCGAAC
325 CCGGCCACCCTGCCTACCTCCCTCGAGGCGCTCGGCGTGGATCGAAC
* *
33596888 GGTTTAGGGCTGGCTCTGATACCACTTGTCACGGGTCGAGACTCAAGCTCCGAAACCGCGCGGCT
1 GGTTTAGGGCTGGCTCTGATACCACTTGTCACGGGTCGAGACTCAAGCTCCGAACCCGCACGGCT
*
33596953 CCAGGACCCGGGCATTCACCCTTCCGGCGTCCCAGATCAGCCTTCCTGCCACGGTTCACACCCTT
66 CCGGGACCCGGGCATTCACCCTTCCGGCGTCCCAGATCAGCCTTCC-GCCACGGTTCACACCCTT
33597018 GTGAGGTATTGTCCGCTCTGGCCCCCT-TGG-CTCACGGTTTTGTCCTACAAAAGGCGCCTCACA
130 GTGAGGTATTGTCCGCTCTGGCCCCCTCTGGCCTCACGGTTTTGTCCTACAAAAGGCGCCTCACA
*
33597081 AGGCGGAGATGGTGTGAACCTTTTTATACCCCAGTGACCTTCCTATTATGTTCGATGTGGGATTC
195 AGGCGGAGATGGTGTGAACCCTTTTATACCCCAGTGACCTTCCTATTATGTTCGATGTGGGATTC
33597146 AGGACTCCCCCTTAGGTCCGTGACATTCTCCCGCACCCAACCTCGTGACGCCCTCGTCACGGAGG
260 AGGACTCCCCCTTAGGTCCGTGACATTCTCCCGCACCCAACCTCGTGACGCCCTCGTCACGGAGG
33597211 CCGGCCACCCTGCCTACCTCCCTCGAGGCGCTCGGCGTGGATCGAAC
325 CCGGCCACCCTGCCTACCTCCCTCGAGGCGCTCGGCGTGGATCGAAC
* *
33597258 GGTTTAGGGCTGGCTCTGATACCACTTGTCACGGGTCGAGACTTAAGCTCCGAACCCGCGCGGCT
1 GGTTTAGGGCTGGCTCTGATACCACTTGTCACGGGTCGAGACTCAAGCTCCGAACCCGCACGGCT
* * * *
33597323 CCGGGACCCGAGCATTCATCATTCCGGCGTCCCAGATCAGCCTTCCGCCGCGGTTCACACCCTTG
66 CCGGGACCCGGGCATTCACCCTTCCGGCGTCCCAGATCAGCCTTCCGCCACGGTTCACACCCTTG
33597388 TGAGGTATTGTCCGCTCTGGCCCCCTCTGGCCTCACGGTTTTGTCCTACAAAAGGCGCCTCACAA
131 TGAGGTATTGTCCGCTCTGGCCCCCTCTGGCCTCACGGTTTTGTCCTACAAAAGGCGCCTCACAA
33597453 GGCGGAGATGGTGTGAACCCTTTTATACCCCAGTGACCTTCCTATTATGTTCGATGTGGGATTCA
196 GGCGGAGATGGTGTGAACCCTTTTATACCCCAGTGACCTTCCTATTATGTTCGATGTGGGATTCA
* * *
33597518 GGACTCTCCCTTGGGTCCGTGACATTCTCCCGCACCCAACCTCGTGACGCCCTCGTCATGGAGGC
261 GGACTCCCCCTTAGGTCCGTGACATTCTCCCGCACCCAACCTCGTGACGCCCTCGTCACGGAGGC
*
33597583 CGGCCACCCTGCCTACCTCCATCGAGGCGCTCGGCGTGGATCGAAC
326 CGGCCACCCTGCCTACCTCCCTCGAGGCGCTCGGCGTGGATCGAAC
33597629 GGTTTAGGGCTGGCTCTGATACCACTTGTCACGGGTCGAGACTCAAGCTCCGAACCCGCACGGCT
1 GGTTTAGGGCTGGCTCTGATACCACTTGTCACGGGTCGAGACTCAAGCTCCGAACCCGCACGGCT
*
33597694 CCAGGACCCGGGCATTCACCCTTCCGGCGTCCCAGATCAGCCTTC
66 CCGGGACCCGGGCATTCACCCTTCCGGCGTCCCAGATCAGCCTTC
33597739 TGAGGCGCCT
Statistics
Matches: 1515, Mismatches: 71, Indels: 14
0.95 0.04 0.01
Matches are distributed among these distances:
368 1 0.00
369 144 0.10
370 351 0.23
371 660 0.44
372 359 0.24
ACGTcount: A:0.17, C:0.35, G:0.25, T:0.23
Consensus pattern (371 bp):
GGTTTAGGGCTGGCTCTGATACCACTTGTCACGGGTCGAGACTCAAGCTCCGAACCCGCACGGCT
CCGGGACCCGGGCATTCACCCTTCCGGCGTCCCAGATCAGCCTTCCGCCACGGTTCACACCCTTG
TGAGGTATTGTCCGCTCTGGCCCCCTCTGGCCTCACGGTTTTGTCCTACAAAAGGCGCCTCACAA
GGCGGAGATGGTGTGAACCCTTTTATACCCCAGTGACCTTCCTATTATGTTCGATGTGGGATTCA
GGACTCCCCCTTAGGTCCGTGACATTCTCCCGCACCCAACCTCGTGACGCCCTCGTCACGGAGGC
CGGCCACCCTGCCTACCTCCCTCGAGGCGCTCGGCGTGGATCGAAC
Found at i:33598049 original size:26 final size:26
Alignment explanation
Indices: 33598020--33598072 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33598010 CCGATCTGAT
*
33598020 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCCTATG
33598046 CTTAGACATGGAATGAACTCCCTATG
1 CTTAGACATGGAATGAACTCCCTATG
33598072 C
1 C
33598073 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCCTATG
Found at i:33598317 original size:184 final size:184
Alignment explanation
Indices: 33597994--33598330 Score: 516
Period size: 184 Copynumber: 1.8 Consensus size: 184
33597984 CTGGTCCTGC
33597994 TGTCGCAACTCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAA
1 TGTCGCAACTCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAA
* * * *
33598059 TGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAGCCGACCGGAGATGC
66 TGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGAGGC
33598124 AGAATGCGCAAGTCGGGGATCGACCCGGTCCCCCTTGCGTGCTATCGATCATGT
131 AGAATGCGCAAGTCGGGGATCGACCCGGTCCCCCTTGCGTGCTATCGATCATGT
* * *
33598178 TGTCGCAAGC-CTTGGTCCGGTCTGATCTTTGACTGGGAATGAACTCCGTATGCTTAGAC-TCGG
1 TGTCGCAA-CTCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAT-GG
* * * * *
33598241 GATGAACTCTCTATGCCTAAGTCAACCCACGAAACGAGCGTGCGTGCGCTCAGTCGACCAGAGAG
64 AATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGAG
* *
33598306 GCAGGATGCGCAAGTTGGGGATCGA
129 GCAGAATGCGCAAGTCGGGGATCGA
33598331 ACGGGTGGTA
Statistics
Matches: 137, Mismatches: 14, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
183 1 0.01
184 135 0.99
185 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.29, T:0.22
Consensus pattern (184 bp):
TGTCGCAACTCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAA
TGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGAGGC
AGAATGCGCAAGTCGGGGATCGACCCGGTCCCCCTTGCGTGCTATCGATCATGT
Done.