Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 368 of 402
Found at i:33598965 original size:26 final size:26
Alignment explanation
Indices: 33598927--33598979 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33598917 GGCTCAAAAT
33598927 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
33598953 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
33598979 C
1 C
33598980 CTAAGCCAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:33599948 original size:159 final size:159
Alignment explanation
Indices: 33599585--33599998 Score: 380
Period size: 159 Copynumber: 2.6 Consensus size: 159
33599575 CTACCAATCC
* * *
33599585 CGCTGCCAGTCCTACTGCCACAACCCTCGGTCTGG-TTGCGGCTTAGACATGGAATGAACTCTGT
1 CGCTGTCAGTCCTACTGCCACAACCCTCAGTCTGGCTAG-GGCTTAGACATGGAATGAACTCTGT
* * * *
33599649 ATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCTCTCACCCGACCGAAAAGCCAGAATGCGCA
65 ATGCCGAAGCCAACCCACGAAACGAGCGTGCGAGCTCTAACCCGAACGAAAAGCCAGAATGCGCA
* *
33599714 AGCCGGGGACTGGCCTGGTTCTCCCCTGCA
130 AGCCAGGGACTGGCCCGGTTCTCCCCTGCA
* * * * * * ** *
33599744 CGCTGTC-GATCCTGCTACCGCAACCCTCATTCTGATCCA-ATCTTAGAC-TGGAAATGAATTCT
1 CGCTGTCAG-TCCTACTGCCACAACCCTCAGTCTG-GCTAGGGCTTAGACATGG-AATGAACTCT
* * * * *
33599806 GTATGCCGAA-CTCAACCCACGAAATGAGCGTGCGAG-TGCTAAGCCGAACGAAGAGGCATAATG
63 GTATGCCGAAGC-CAACCCACGAAACGAGCGTGCGAGCT-CTAACCCGAACGAAAAGCCAGAATG
* *
33599869 CGCAAGTCAGGGA-TCGGCCCGG-TC-CCTCTCTGCG
126 CGCAAGCCAGGGACT-GGCCCGGTTCTCC-C-CTGCA
* * *
33599903 TGCTGTCAGTCCCACTGCCACAACCCTCAGTCTGGCTAGGGCTTAGACATGGAATGAACTCCGTA
1 CGCTGTCAGTCCTACTGCCACAACCCTCAGTCTGGCTAGGGCTTAGACATGGAATGAACTCTGTA
** * *
33599968 TAACTAAGCCAACCCAC-ATAACGAGTGTGCG
66 TGCCGAAGCCAACCCACGA-AACGAGCGTGCG
33599999 GGTTCTCAGC
Statistics
Matches: 199, Mismatches: 42, Indels: 28
0.74 0.16 0.10
Matches are distributed among these distances:
157 2 0.01
158 13 0.07
159 179 0.90
160 5 0.03
ACGTcount: A:0.24, C:0.31, G:0.25, T:0.20
Consensus pattern (159 bp):
CGCTGTCAGTCCTACTGCCACAACCCTCAGTCTGGCTAGGGCTTAGACATGGAATGAACTCTGTA
TGCCGAAGCCAACCCACGAAACGAGCGTGCGAGCTCTAACCCGAACGAAAAGCCAGAATGCGCAA
GCCAGGGACTGGCCCGGTTCTCCCCTGCA
Found at i:33600379 original size:157 final size:156
Alignment explanation
Indices: 33600082--33600614 Score: 355
Period size: 157 Copynumber: 3.4 Consensus size: 156
33600072 CAGCTGCTGG
* * * *
33600082 TCCTGCTACCGTAACCCTCGGTCTGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
1 TCCTGCTACCGCAACCCTCGATCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCATAAGC
* * * ** *
33600147 CAACCCACGAAACAAGAGTACGGGTGCTCAGTCGATCGGAGAGGTAGAATGCATAAGCCGGGGGT
66 CAACCCACGAAACAAGAGTACGAGCGCTAAACCGATCGAAGAGGTAGAATGCA-AAGCCGGGGGT
33600212 AGACTCGGTCCCCCTGTGTGCTATCGA
130 AGACTCGGTCCCCCTGTGTGCTATCGA
* * * *
33600239 TCCTGCTACCGCAACCCTTGATCCGATCCGATCTTAGACTGGGAATGAACTTCGTATGCATAAGT
1 TCCTGCTACCGCAACCCTCGATCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCATAAGC
* * * * *
33600304 CAACCCACGAAACGAGCGTGCGAGCGCTAAACCGA-CTGAAGAAGCGTA-ATGTGC-AAGTCGGG
66 CAACCCACGAAACAAGAGTACGAGCGCTAAACCGATC-GAAG-AG-GTAGA-ATGCAAAGCCGGG
* * * * * *
33600366 GTTCAGCCT-GGTCCCCCTCTACATACTACCGA
127 GGT-AGACTCGGTCCCCCTGT--GTGCTATCGA
** * ** **** * *
33600398 TCCCACTGCCATAACCCTCGATCCGA-CTGGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAA
1 TCCTGCTACCGCAACCCTCGATCCGATC-CAATCTTAGAC-TGGGAATGAACTCCGTATGCATAA
* * * * * * * * *
33600461 GCCGACCCATGAAACAGGCA-TGCGAGCACTCAACCGGTC-AGAGAGGTAGAATGCGTAAGCCGA
64 GCCAACCCACGAAACAAG-AGTACGAGCGCTAAACCGATCGA-AGAGGTAGAATGC-AAAGCCGG
* * * * * * *
33600524 GGATCGGCCCGATCCCCCT-TACGTACCATCGA
126 GGGTAGACTCGGTCCCCCTGT--GTGCTATCGA
* * * * *
33600556 TCCTACTACCGCAACTCTCGGTCCGATGCAATCTTAGACTGGGAATGAACTTCGTATGC
1 TCCTGCTACCGCAACCCTCGATCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGC
33600615 TTAGACTGGG
Statistics
Matches: 288, Mismatches: 70, Indels: 35
0.73 0.18 0.09
Matches are distributed among these distances:
156 1 0.00
157 113 0.39
158 67 0.23
159 105 0.36
160 2 0.01
ACGTcount: A:0.26, C:0.30, G:0.24, T:0.20
Consensus pattern (156 bp):
TCCTGCTACCGCAACCCTCGATCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCATAAGC
CAACCCACGAAACAAGAGTACGAGCGCTAAACCGATCGAAGAGGTAGAATGCAAAGCCGGGGGTA
GACTCGGTCCCCCTGTGTGCTATCGA
Found at i:33600507 original size:486 final size:488
Alignment explanation
Indices: 33599482--33600541 Score: 1088
Period size: 486 Copynumber: 2.2 Consensus size: 488
33599472 CTTTGTATGC
* * * * * * * * * *
33599482 CTAAGTCAACCCACGA-AACGAGCGTGAGGGCGCTCAACTGGCCGGAGAGGCATAATGCACAAGC
1 CTAAGCCAACCCAC-ATAACGAGTGTGCGAGCACTCAACCGGCCAGAGAGGTAGAATGCGCAAGC
* * * * ** * ** * * **
33599546 CTAGGATCAGCCCGATCGCCCTCTGCGTGCTACCAATCCCGCTGCCAGTCCTACTGCCACAACCC
65 CGAGGATCGGCCCGATC-CCCCCTGCGTGTTGTCAATCCAGCTGCTGGTCCTGCTACCGTAACCC
* * ** * *
33599611 TCGGTCTGGTTGC-GGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAG
129 TCGGTCT-GATCCAATCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAG
* * * * *
33599675 CGTGCGGGCTCTCACCCGACCGAAAAGCCAGAATGCGCAAGCCGGGGACTGGCCTGGTTCTCCCC
193 AGTACGGGCTCTCACCCGACCGAAAAGCCAGAATGCACAAGCCGGGGACTAGACTGGTTCTCCCC
* *
33599740 TGCACGCTGTCGATCCTGCTACCGCAACCCTCATTCTGATCCAATCTTAGACTGGAAATGAATTC
258 TGCACGCTATCGATCCTGCTACCGCAACCCTCATTCCGATCCAATCTTAGACTGGAAATGAATTC
* * * * *
33599805 TGTATGCCGAACTCAACCCACGAAATGAGCGTGCGAGTGCTAAGCCGAACGAAGAGGCATAATGC
323 TGTATGCAGAACTCAACCCACGAAACGAGCGTGCGAGCGCTAAACCGAACGAAGAAGCATAATGC
* * * * * **
33599870 GCAAGTCAGGGATCGGCCCGGTCCCTCTCTGCGTGCTGTCAGTCCCACTGCCACAACCCTCAGTC
388 GCAAGTCAGGGATCAGCCCGGTCCCCCTCTACATACTACCAGTCCCACTGCCACAACCCTCAGTC
* * *
33599935 TGGCTAGGGCTTAGACATGGAATGAACTCCGTATAA
453 CGACTAGGGCTTAGACATGGAATGAACTCCCTATAA
* ** * * *
33599971 CTAAGCCAACCCACATAACGAGTGTGCGGGTTCTCAGCCGGCCGGAGAGGTAGAGTGCGCAAGCC
1 CTAAGCCAACCCACATAACGAGTGTGCGAGCACTCAACCGGCCAGAGAGGTAGAATGCGCAAGCC
* *
33600036 GGGGATCGGCTCGATCCCCCCTGCGTGTTGTCAATCCAGCTGCTGGTCCTGCTACCGTAACCCTC
66 GAGGATCGGCCCGATCCCCCCTGCGTGTTGTCAATCCAGCTGCTGGTCCTGCTACCGTAACCCTC
33600101 GGTCTGATCCAATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGAG
131 GGTCTGATCCAATCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGAG
** * * * ** * *
33600165 TACGGG-TGCTCAGTCGATCGGAGAGGTAGAATGCATAAGCCGGGG-GTAGACTCGG-TC-CCCC
195 TACGGGCT-CTCACCCGACCGAAAAGCCAGAATGCACAAGCCGGGGACTAGACT-GGTTCTCCCC
*** * * *
33600226 TGTGTGCTATCGATCCTGCTACCGCAACCCTTGA-TCCGATCCGATCTTAGACTGGGAATGAACT
258 TGCACGCTATCGATCCTGCTACCGCAACCC-TCATTCCGATCCAATCTTAGACTGGAAATGAA-T
* * *
33600290 TC-GTATGCATAAGTCAACCCACGAAACGAGCGTGCGAGCGCTAAACCG-ACTGAAGAAGCGTAA
321 TCTGTATGCAGAACTCAACCCACGAAACGAGCGTGCGAGCGCTAAACCGAAC-GAAGAAGCATAA
* * * * *
33600353 TGTGCAAGTCGGGGTTCAGCCTGGTCCCCCTCTACATACTACC-GATCCCACTGCCATAACCCTC
385 TGCGCAAGTCAGGGATCAGCCCGGTCCCCCTCTACATACTACCAG-TCCCACTGCCACAACCCTC
* **
33600417 -GATCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGC
449 AG-TCCGACTAGGGCTTAGACATGGAATGAACTCCCTATAA
* * * *
33600457 CTAAGCCGACCCATGA-AAC-AG-GCATGCGAGCACTCAACCGGTCAGAGAGGTAGAATGCGTAA
1 CTAAGCCAACCCA-CATAACGAGTG--TGCGAGCACTCAACCGGCCAGAGAGGTAGAATGCGCAA
33600519 GCCGAGGATCGGCCCGATCCCCC
63 GCCGAGGATCGGCCCGATCCCCC
33600542 TTACGTACCA
Statistics
Matches: 466, Mismatches: 92, Indels: 29
0.79 0.16 0.05
Matches are distributed among these distances:
484 1 0.00
485 6 0.01
486 253 0.54
487 17 0.04
488 125 0.27
489 64 0.14
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (488 bp):
CTAAGCCAACCCACATAACGAGTGTGCGAGCACTCAACCGGCCAGAGAGGTAGAATGCGCAAGCC
GAGGATCGGCCCGATCCCCCCTGCGTGTTGTCAATCCAGCTGCTGGTCCTGCTACCGTAACCCTC
GGTCTGATCCAATCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGAGT
ACGGGCTCTCACCCGACCGAAAAGCCAGAATGCACAAGCCGGGGACTAGACTGGTTCTCCCCTGC
ACGCTATCGATCCTGCTACCGCAACCCTCATTCCGATCCAATCTTAGACTGGAAATGAATTCTGT
ATGCAGAACTCAACCCACGAAACGAGCGTGCGAGCGCTAAACCGAACGAAGAAGCATAATGCGCA
AGTCAGGGATCAGCCCGGTCCCCCTCTACATACTACCAGTCCCACTGCCACAACCCTCAGTCCGA
CTAGGGCTTAGACATGGAATGAACTCCCTATAA
Found at i:33600624 original size:26 final size:26
Alignment explanation
Indices: 33600588--33600640 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
33600578 CCGATGCAAT
*
33600588 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
33600614 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
33600640 C
1 C
33600641 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:33601882 original size:26 final size:26
Alignment explanation
Indices: 33601844--33601896 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33601834 GGCTCAAAAT
33601844 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
33601870 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
33601896 C
1 C
33601897 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:33602165 original size:159 final size:158
Alignment explanation
Indices: 33601870--33602372 Score: 511
Period size: 159 Copynumber: 3.2 Consensus size: 158
33601860 ACTCCATATG
* * * *
33601870 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAACATGCGGGCGCTTAGC
1 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
* * *
33601935 CGGCTGGAGAGGCAG-AATGCGCAAGTCGGGGATCGACCCGGTCCCCCTTTGTGTGCTGTCAATC
66 CGGCCGGAGAGGC-GTAATGCGCAAGTCGGGGATCGACCCGATCCCCC-TTGTGTGCTGTCGATC
* *
33601999 CTACTACCGCAACCCTCAGTCTGATCCGAT
129 CTGCTACCACAACCCTCAGTCTGATCCGAT
* * * * *
33602029 CTTAGAC-TAGGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGCGTACGGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
** * *
33602093 CCGGCCAAAGAGGCGTAATGCGCAAG-CTGGGGATCGGCCCGATCCCCCTCTGTGTGCTGTCGGT
65 CCGGCCGGAGAGGCGTAATGCGCAAGTC-GGGGATCGACCCGATCCCCCT-TGTGTGCTGTCGAT
* * * * ** *
33602157 CCCGCTACCACAACCCTCATTCCAGCTGGGGT
128 CCTGCTACCACAACCCTCAGT-CTGATCCGAT
* * * * *
33602189 -TTAGACATCGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGGGTGTGCGGGCGCTCAGT
1 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
* *
33602253 CGACCGGAGA-GC-TAGAATGCGCAAGTCGGGGA-CTGACCCGATCCCCCTTGCGTGCTGTCGAT
66 CGGCCGGAGAGGCGT--AATGCGCAAGTCGGGGATC-GACCCGATCCCCCTTGTGTGCTGTCGAT
* ** * *
33602315 CCTGCTGCCACAACCCTTGGT-TCAGTCTGAT
128 CCTGCTACCACAACCCTCAGTCTGA-TCCGAT
33602346 CTTAGAC-TAGGAATGAACTCCATATGC
1 CTTAGACAT-GGAATGAACTCCATATGC
33602373 TTAGACTGGG
Statistics
Matches: 281, Mismatches: 50, Indels: 27
0.78 0.14 0.08
Matches are distributed among these distances:
157 5 0.02
158 58 0.21
159 211 0.75
160 7 0.02
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.20
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
CGGCCGGAGAGGCGTAATGCGCAAGTCGGGGATCGACCCGATCCCCCTTGTGTGCTGTCGATCCT
GCTACCACAACCCTCAGTCTGATCCGAT
Found at i:33603106 original size:26 final size:26
Alignment explanation
Indices: 33603068--33603120 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33603058 GGCTCAAAAT
*
33603068 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
33603094 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
33603120 C
1 C
33603121 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:33606440 original size:26 final size:26
Alignment explanation
Indices: 33606389--33606441 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
33606379 GGCTCAAAAT
*
33606389 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
*
33606415 CTTAGAC-ATGGAATGAACTTCATATG
1 CTTAGACTA-GGAATGAACTCCATATG
33606441 C
1 C
33606442 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:33606607 original size:25 final size:26
Alignment explanation
Indices: 33606573--33606624 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
33606563 CTGGTCCAAT
33606573 CTTAGACTGGGAATGAACTC-GTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
33606598 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
33606624 C
1 C
33606625 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 19 0.76
26 6 0.24
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:33607680 original size:159 final size:157
Alignment explanation
Indices: 33607484--33608073 Score: 469
Period size: 159 Copynumber: 3.7 Consensus size: 157
33607474 TCACTCTGAT
* * * *
33607484 CTTAGACTGGGAATGAACTCCATATGCATAAGTCAACCCATGAAACGAGCGTACGGGTGCTGAGC
1 CTTAGACTAGGAATGAACTCCATATGCATAAGCCAACCCATGAAACGAGCGTGCGGGCGCTGAGC
* * *
33607549 TGACCGAAGAGACATAATGCGCAAGCCAGGGATCAGCCCAGTCCCCCTCTGTGTGCTGTCGGTCC
66 TGACCGAAGAGGCATAATGCGCAAGCCAGGGATCAGCCC-GTCCCCCTCTGCGTGCTGACGGTCC
* * * * *
33607614 CGTTGCCATAACCCTCAGTTCGACTGGGG
130 TGCTGCCACAACCCTCGGTCCGACT-GGG
* * * *
33607643 CTTAGAC-ATGGAATGAACTCCTTATGCCTAAGCCAACCCATGAAACGGGCAGTGCGGGCGCTCA
1 CTTAGACTA-GGAATGAACTCCATATGCATAAGCCAACCCATGAAACGAGC-GTGCGGGCGCTGA
* * * * *
33607707 G-TCGACCCG-AGAGGCAGAATGCGTAAGTCAAGGATCAGCCTGGTCCCCCT-TGCGTGCT-ACT
64 GCT-GA-CCGAAGAGGCATAATGCGCAAGCCAGGGATCAGCC-CGTCCCCCTCTGCGTGCTGAC-
* * * * * **
33607768 GATCCTACTGTCGCAACCCTCGGTCCGGTCTGAT
125 GGTCCTGCTGCCACAACCCTCGGTCC-GACTGGG
* * * * * * ** *
33607802 CTTAGACTAGGAATGAACTCCGTATGCATAAGTCAACACACGAAATGAGCATGCATGCACTGAGC
1 CTTAGACTAGGAATGAACTCCATATGCATAAGCCAACCCATGAAACGAGCGTGCGGGCGCTGAGC
* * * * * * *
33607867 CGGCCGAAGAGGCATAACGCACAAGCC-GAGGATC-GACCCGATCCCTCTCTGCGTGCTGCCAGT
66 TGACCGAAGAGGCATAATGCGCAAGCCAG-GGATCAG-CCCG-TCCCCCTCTGCGTGCTGACGGT
*
33607930 CCTGCTGCCACAACCCTCGGTCCGGCTAGGG
128 CCTGCTGCCACAACCCTCGGTCCGACT-GGG
* * * * * * *
33607961 CTTAGAC-ATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGTGTGCGAGCACTCAG
1 CTTAGACTA-GGAATGAACTCCATATGCATAAGCCAACCCATGAAACGAGCGTGCGGGCGCTGAG
* * * *
33608025 TTGGCCGAAGAGGCAGAATGCGCAAGCC-GAGGATCGGCCCGGTCCCCCT
65 CTGACCGAAGAGGCATAATGCGCAAGCCAG-GGATCAGCCC-GTCCCCCT
33608074 ACAGGCTGCC
Statistics
Matches: 335, Mismatches: 77, Indels: 38
0.74 0.17 0.08
Matches are distributed among these distances:
157 5 0.01
158 43 0.13
159 230 0.69
160 54 0.16
161 3 0.01
ACGTcount: A:0.25, C:0.30, G:0.27, T:0.19
Consensus pattern (157 bp):
CTTAGACTAGGAATGAACTCCATATGCATAAGCCAACCCATGAAACGAGCGTGCGGGCGCTGAGC
TGACCGAAGAGGCATAATGCGCAAGCCAGGGATCAGCCCGTCCCCCTCTGCGTGCTGACGGTCCT
GCTGCCACAACCCTCGGTCCGACTGGG
Found at i:33607947 original size:318 final size:315
Alignment explanation
Indices: 33607330--33608073 Score: 865
Period size: 318 Copynumber: 2.4 Consensus size: 315
33607320 CTCCATACGT
* * * * *
33607330 TTAGACATGGAATGAACT-CTGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCTCTCAGC
1 TTAGACATGGAATGAACTCCT-TATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCACTCAGT
* * * * *
33607394 CGACCGGAGA-GAAGAATGCGTAAGCCGAGGAT-TGACTCGATCCCCCTTGCCTACTATCGATCC
65 CGACCCGAGAGGCAGAATGCGTAAGCCGAGGATCAGCCT-GGTCCCCCTTGCCTACTATCGATCC
* * *
33607457 TACTGGCAACCCTCGGTTCACTCTGATCTTAGACTGGGAATGAACTCCATATGCATAAGTCAACC
129 TACTGGCAACCCTCGGTCCACTCTGATCTTAGACTAGGAATGAACTCCATATGCATAAGTCAACA
* * * ** * * *
33607522 CATGAAACGAGCGTACGGGTGCTGAGCTGACCGAAGAGACATAATGCGCAAGCCAGGGATCAGCC
194 CACGAAACGAGCATACAGGCACTGAGCCGACCGAAGAGACATAACGCACAAGCCAGGGATCAGCC
* * * * * * *
33607587 CAGTCCCCCTCTGTGTGCTGTCGGTCCCGTTGCCATAACCCTCAGTTCGACTGGGGC
259 CAGTCCCCCTCTGCGTGCTGCCAGTCCCGCTGCCACAACCCTCAGTCCGACTAGGGC
*
33607644 TTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCATGAAACGGGCAGTGCGGGCGCTCAGT
1 TTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCATGAAACGGGC-GTGCGGGCACTCAGT
* * * *
33607709 CGACCCGAGAGGCAGAATGCGTAAGTCAAGGATCAGCCTGGTCCCCCTTGCGTGCTA-CTGATCC
65 CGACCCGAGAGGCAGAATGCGTAAGCCGAGGATCAGCCTGGTCCCCCTTGCCTACTATC-GATCC
** *
33607773 TACTGTCGCAACCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCATAAGTCAA
129 TACTG--GCAACCCTCGGTCCACTCTGATCTTAGACTAGGAATGAACTCCATATGCATAAGTCAA
* * * * *
33607838 CACACGAAATGAGCATGCATGCACTGAGCCGGCCGAAGAGGCATAACGCACAAGCC-GAGGATC-
192 CACACGAAACGAGCATACAGGCACTGAGCCGACCGAAGAGACATAACGCACAAGCCAG-GGATCA
* * * *
33607901 GACCC-GATCCCTCTCTGCGTGCTGCCAGTCCTGCTGCCACAACCCTCGGTCCGGCTAGGGC
256 G-CCCAG-TCCCCCTCTGCGTGCTGCCAGTCCCGCTGCCACAACCCTCAGTCCGACTAGGGC
* * * *
33607962 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGTGTGCGAGCACTCAGTT
1 TTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCACTCAGTC
* * * *
33608027 G-GCCGAAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGGTCCCCCT
66 GACCCG-AGAGGCAGAATGCGTAAGCCGAGGATCAGCCTGGTCCCCCT
33608074 ACAGGCTGCC
Statistics
Matches: 364, Mismatches: 55, Indels: 19
0.83 0.13 0.04
Matches are distributed among these distances:
314 44 0.12
315 24 0.07
316 47 0.13
317 56 0.15
318 193 0.53
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (315 bp):
TTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCACTCAGTC
GACCCGAGAGGCAGAATGCGTAAGCCGAGGATCAGCCTGGTCCCCCTTGCCTACTATCGATCCTA
CTGGCAACCCTCGGTCCACTCTGATCTTAGACTAGGAATGAACTCCATATGCATAAGTCAACACA
CGAAACGAGCATACAGGCACTGAGCCGACCGAAGAGACATAACGCACAAGCCAGGGATCAGCCCA
GTCCCCCTCTGCGTGCTGCCAGTCCCGCTGCCACAACCCTCAGTCCGACTAGGGC
Found at i:33608509 original size:26 final size:26
Alignment explanation
Indices: 33608480--33608532 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
33608470 CTGGTCCGAT
33608480 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
33608506 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
33608532 C
1 C
33608533 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:33609644 original size:159 final size:157
Alignment explanation
Indices: 33609228--33609729 Score: 479
Period size: 159 Copynumber: 3.2 Consensus size: 157
33609218 AACTTCGTAT
* *
33609228 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCGAGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * * ** *
33609293 CTGGCCGGAAAGGCAAAATGCGCAAGCCAGGGATCGACCCGGTCCCCCCTGCGTATTGTCAATCC
66 CCGGCCGGAGAGGTAAAATGCGCAAGCCGGGGATCGACCCGGT-CCCCTTGCGTGCTGTCGATCC
* **
33609358 TGCTGCCACAACCCTCAATCCGGTTCAA
130 CGCTGCCACAACCCTCAATCCGACTCAA
* * * * * *
33609386 ACTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCAACGAAACGAGCGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
* ** * ** * * * * * *
33609450 ACCGATCGAAGAGGTCTAATACGCAAGCTGAGGATCGACTCGGTGCCACTTTGCGTGCTGCCGAT
65 GCCGGCCGGAGAGGTAAAATGCGCAAGCCGGGGATCGACCCGGT-CC-CCTTGCGTGCTGTCGAT
* ***
33609515 CCCGCTGCCACAACCCTCGATCCGACTGGG
128 CCCGCTGCCACAACCCTCAATCCGACTCAA
* * * *
33609545 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGTGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * *
33609610 CCGGCCGGAGAGGTAGAATGCGTAAGCCGGGGATCGACCCGATCCCCTTGCGTGCTGTCGATCCT
66 CCGGCCGGAGAGGTAAAATGCGCAAGCCGGGGATCGACCCGGTCCCCTTGCGTGCTGTCGATCCC
* * * ** *
33609675 GCTAG-CGCAACCCTCAGTCTGGTTCGA
131 GCT-GCCACAACCCTCAATCCGACTCAA
*
33609702 TCTTAGAC-TGGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
33609730 TTAGACTAGG
Statistics
Matches: 268, Mismatches: 71, Indels: 11
0.77 0.20 0.03
Matches are distributed among these distances:
156 1 0.00
157 59 0.22
158 89 0.33
159 118 0.44
160 1 0.00
ACGTcount: A:0.25, C:0.30, G:0.27, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
CCGGCCGGAGAGGTAAAATGCGCAAGCCGGGGATCGACCCGGTCCCCTTGCGTGCTGTCGATCCC
GCTGCCACAACCCTCAATCCGACTCAA
Found at i:33609744 original size:26 final size:26
Alignment explanation
Indices: 33609703--33609755 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
33609693 CTGGTTCGAT
33609703 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
33609729 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
33609755 C
1 C
33609756 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:33610087 original size:26 final size:26
Alignment explanation
Indices: 33610058--33610110 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
33610048 CCGATCTGAT
33610058 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
33610084 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
33610110 C
1 C
33610111 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:33610181 original size:354 final size:354
Alignment explanation
Indices: 33609522--33610183 Score: 940
Period size: 354 Copynumber: 1.9 Consensus size: 354
33609512 GATCCCGCTG
33609522 CCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAT
1 CCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAT
* * *
33609587 GAAACGGGTGTGCGGGCACTCAGCCGGCCGGAGAGGTAGAATGCGTAAGCCGGGGATCGACCCGA
66 GAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGAGGTAGAATGCGTAAGCCGGGGATCGACCCGA
* * * * *
33609652 TCCCCTTGCGTGCTGTCGATCCTGCTAGCGCAACCCTCAGTCTGGTTCGATCTTAGACTGGGAAT
131 TCCCCCTACGTGCTGCCGATCCTGCTAGCGCAACCCTCAGTCCGATTCGATCTTAGACTGGGAAT
*
33609717 GAACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTG
196 GAACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG
* * *
33609782 CAGGCGCTCAGTCGGTCCGAGAGGCATAATGCGCAAGTCGGGGATCAACCCGGTTCCTGTCTGTA
261 CAGGCCCTCAGTCGGACCGAGAGGCAGAATGCGCAAGTCGGGGATCAACCCGGTTCCTGTCTGTA
33609847 GGCTACCGATCCTGCTGTCGGTCCTGCTA
326 GGCTACCGATCCTGCTGTCGGTCCTGCTA
** * ** *
33609876 CCACAACCCTCGATTTGGCTGGGGCTTAGACATGGAATGAACTCTGTATGCCTCAGCCAACCCAT
1 CCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAT
* * * ** * * * * * *
33609941 GCAATGAGCGTGTGGGTGCTCAGTCGGGCAGAGAGGTAGAATGCGTAAGTCGGGGATCGGCTCGG
66 GAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGAGGTAGAATGCGTAAGCCGGGGATCGACCCGA
33610006 TCCCTCCTACGTGCTGCCGATCCTGCT-GCCGCAACCCTC-GATCCGA-TCTGATCTTAGACTGG
131 TCCC-CCTACGTGCTGCCGATCCTGCTAG-CGCAACCCTCAG-TCCGATTC-GATCTTAGACTGG
33610068 GAATGAACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAA-CCACGAAACGAG
192 GAATGAACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
* * *
33610132 CGTGCGGGCCCTCAGTC-GACCAGAGAGGCAGGATGTGCAAG-CTGGGGATCAA
257 CGTGCAGGCCCTCAGTCGGACC-GAGAGGCAGAATGCGCAAGTC-GGGGATCAA
33610184 ATGGGTAGCA
Statistics
Matches: 270, Mismatches: 32, Indels: 12
0.86 0.10 0.04
Matches are distributed among these distances:
353 4 0.01
354 169 0.63
355 97 0.36
ACGTcount: A:0.23, C:0.28, G:0.29, T:0.21
Consensus pattern (354 bp):
CCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAT
GAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGAGGTAGAATGCGTAAGCCGGGGATCGACCCGA
TCCCCCTACGTGCTGCCGATCCTGCTAGCGCAACCCTCAGTCCGATTCGATCTTAGACTGGGAAT
GAACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG
CAGGCCCTCAGTCGGACCGAGAGGCAGAATGCGCAAGTCGGGGATCAACCCGGTTCCTGTCTGTA
GGCTACCGATCCTGCTGTCGGTCCTGCTA
Found at i:33610827 original size:26 final size:26
Alignment explanation
Indices: 33610789--33610841 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
33610779 GGCTTAAAAT
33610789 CTTAGACTGGGAAAGAACTCCATATG
1 CTTAGACTGGGAAAGAACTCCATATG
* *
33610815 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAAAGAACTCCATATG
33610841 C
1 C
33610842 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.21, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCATATG
Found at i:33612678 original size:616 final size:613
Alignment explanation
Indices: 33611508--33612700 Score: 1899
Period size: 616 Copynumber: 1.9 Consensus size: 613
33611498 ATGAACTCTG
* * **
33611508 TATGCTTAGACTAAGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCT
1 TATGCTTAGACTAAGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACAAGCATGCGGGAACT
* * *
33611573 CAATCGACCAGAGAGGCAAGATGAGTAAGCCGGGGATCGAACGAGTGGTAGGTGGGTTCAAGCAC
66 CAATCGACCAGAGAGGCAAGATGAGTAAACCGAGAATCGAACGAGTGGTAGGTGGGTTCAAGCAC
*
33611638 ATCTTTAATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
131 ATCTTTAATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCCTAA
*
33611703 GCCTTCATGTGAAGTTTCGTGGCAAGACGACCCATTTTCTATTTTTCATGATTTTTGAAACTTTT
196 GCCTTCATGTGAAGTTTCGTGGCAAGACGACCCATGTTCTATTTTTCATGATTTTTGAAACTTTT
* *
33611768 TACGATTCTAGATTTTTTAAAAATTTTTTAGATATAGTTTTGTCCCCAAAATTGGTAGAGGTGAT
261 TACGATTCTAGATTTTTTAAAAATTTTTTAGAAAGAGTTTTGTCCCCAAAATTGGTAGAGGTGAT
* *
33611833 CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAACAACTCGAAGTGGAGAAGATTTTGT
326 CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGGAGAAGATTTTGT
* *
33611898 GACCGTTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAA
391 GACCGTTTAAAAAAAATGTCCCCATGTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAA
*
33611963 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
456 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGAGATAGGGGGCCAATATAA
* * * * * *
33612028 GGGCCGAGTACCAGCAGCTATCACACATCATGTGCACACACCCTCGGCCCCCCCAATTGTCGGAA
521 GGGCCAAGTACCAGCACCCATCACACATCATGTGCACACACCCCCCGACCCCCCAATTGTCGGAA
33612093 CCCCTAATAATGCTGGTTAGGCTCTCCA
586 CCCCTAATAATGCTGGTTAGGCTCTCCA
** * *
33612121 TATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACTCACAAAACAAGCATGTGGGAACT
1 TATGCTTAGACTAAGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACAAGCATGCGGGAACT
* * * *
33612186 CAA-CAGACCAGAGAGGCAGGATGTGTAAATCGAGAATCGAACGGGTGGTAGGTGGGTTCAAGCA
66 CAATC-GACCAGAGAGGCAAGATGAGTAAACCGAGAATCGAACGAGTGGTAGGTGGGTTCAAGCA
33612250 CATCTTCGT-ATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCC
130 CATCTT--TAATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCC
* * * *
33612314 TAAGCCTTCATGTGAAGTTTCGTGGCAATAGGACCCGTGTTCTATTTTTCATGATTTTTTAAACT
193 TAAGCCTTCATGTGAAGTTTCGTGGCAAGACGACCCATGTTCTATTTTTCATGATTTTTGAAACT
** * * * *
33612379 TTTTGTGGTT-TGGGATTTTTTAAAATTTTTTTAGAAAGAGTTTTGTCCCCAAATTTGGTAGAGG
258 TTTTACGATTCT-AGATTTTTTAAAAATTTTTTAGAAAGAGTTTTGTCCCCAAAATTGGTAGAGG
* *
33612443 TGATCCTTGTATTTTTTTTTTGGC-TGGCACAAAAAAATTCAGCTAAAAACTCAAAGTGGAGATG
322 TGATCCTTGTA--TTTTTGTTGGCAT-GCACAAAAAAATTCAGCTAAAAACTCAAAGTGGAGAAG
33612507 ATTTTGTGACCGTTTAAAAAAAATGTCCCCATGTCAGACACTTTAATGGCTACTGGCAGCAAACC
384 ATTTTGTGACCGTTTAAAAAAAATGTCCCCATGTCAGACACTTTAATGGCTACTGGCAGCAAACC
33612572 TATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGAGATAGGGGGCC
449 TATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGAGATAGGGGGCC
* *
33612637 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCCCCCAAT
514 AATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCACACACCCCCCGACCCCCCAAT
33612701 CGCTGGAGCC
Statistics
Matches: 529, Mismatches: 44, Indels: 11
0.91 0.08 0.02
Matches are distributed among these distances:
612 1 0.00
613 119 0.22
614 179 0.34
615 2 0.00
616 228 0.43
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.29
Consensus pattern (613 bp):
TATGCTTAGACTAAGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACAAGCATGCGGGAACT
CAATCGACCAGAGAGGCAAGATGAGTAAACCGAGAATCGAACGAGTGGTAGGTGGGTTCAAGCAC
ATCTTTAATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCCTAA
GCCTTCATGTGAAGTTTCGTGGCAAGACGACCCATGTTCTATTTTTCATGATTTTTGAAACTTTT
TACGATTCTAGATTTTTTAAAAATTTTTTAGAAAGAGTTTTGTCCCCAAAATTGGTAGAGGTGAT
CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGGAGAAGATTTTGT
GACCGTTTAAAAAAAATGTCCCCATGTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAA
TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGAGATAGGGGGCCAATATAA
GGGCCAAGTACCAGCACCCATCACACATCATGTGCACACACCCCCCGACCCCCCAATTGTCGGAA
CCCCTAATAATGCTGGTTAGGCTCTCCA
Found at i:33612863 original size:26 final size:26
Alignment explanation
Indices: 33612823--33612875 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
33612813 GGCTCAAAAT
*
33612823 CTTAGACTGGAAATGAACTCTGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
*
33612849 CTTAGACATGG-AATGACCTCCGTATG
1 CTTAGAC-TGGAAATGAACTCCGTATG
33612875 C
1 C
33612876 CTAAACCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:33614950 original size:159 final size:158
Alignment explanation
Indices: 33614469--33615007 Score: 458
Period size: 159 Copynumber: 3.4 Consensus size: 158
33614459 ACTTCATATG
* *
33614469 CTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACA-AGCGTGCGGGTGCTCAA
1 CTTAGAC-AGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACAGAGCGTGCGGGTGCTCAG
* *** * * *
33614533 TCAATTAGAAAGGTAGAATGCGTAAGCCTGGGATC-AGCCCGATCCCCCCTTGCGTGCTATCGAT
65 CCAACCGGAAAGGCAGAATGCGCAAG-CTGGGATCGA-CCCGATCCCCCCTTGCGTGCTGTCGAT
* * **
33614597 CCTGCTGCTACAACCCTCAGTCCGATCCAAT
128 CCTGCTGCCACAACCCTCAGTCTGATCTGAT
* * * *
33614628 TTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCA-CAAA-ATGAGCG-GTCGGGCGCTG
1 CTTAGAC-AGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACA-GAGCGTG-CGGGTGCTC
* * * * * * *
33614690 AGCCAACCGGAGAGGCATAATGTGCAAGCCAGGCATCGACCTGAT-CCCCCTATGCCTGCTGTCG
63 AGCCAACCGGAAAGGCAGAATGCGCAAG-CTGGGATCGACCCGATCCCCCCT-TGCGTGCTGTCG
* * *
33614754 GT-CTCGGTGCCACAACCCTCGGT-TCGA-CTGGGA-
126 ATCCT-GCTGCCACAACCCTCAGTCT-GATCT--GAT
*
33614787 CTTAGACACGGAATGAACTCCCTATGCCTAAG-CTAACCCATGAAACAG-GCGTGCGGGTGCTCA
1 CTTAGACA-GGAATGAACTCCGTATGCCTAAGTC-AACCCATGAAACAGAGCGTGCGGGTGCTCA
* * * * * * *
33614850 GCCGACCGGACAGGCAGAATGCGCAAGTTGGGGGTCGATCGGGTCCCCCCTT-CTGTGCTGTCGA
64 GCCAACCGGAAAGGCAGAATGCGCAAGCT-GGGATCGACCCGATCCCCCCTTGC-GTGCTGTCGA
*
33614914 TCCTGCTGCCACAACCCTCCGTCTGATCTGAT
127 TCCTGCTGCCACAACCCTCAGTCTGATCTGAT
** * * *
33614946 CTTAGATTGGGGATGAACTTCGTATGCCTAAGTCAACCCATGAAAC-GAGCGTGCGAGTGCTC
1 CTTAGA-CAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACAGAGCGTGCGGGTGCTC
33615008 GACCGATCAG
Statistics
Matches: 302, Mismatches: 54, Indels: 48
0.75 0.13 0.12
Matches are distributed among these distances:
157 1 0.00
158 19 0.06
159 262 0.87
160 19 0.06
161 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (158 bp):
CTTAGACAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACAGAGCGTGCGGGTGCTCAGC
CAACCGGAAAGGCAGAATGCGCAAGCTGGGATCGACCCGATCCCCCCTTGCGTGCTGTCGATCCT
GCTGCCACAACCCTCAGTCTGATCTGAT
Found at i:33615058 original size:318 final size:323
Alignment explanation
Indices: 33614468--33615180 Score: 725
Period size: 318 Copynumber: 2.2 Consensus size: 323
33614458 AACTTCATAT
* *
33614468 GCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGTGCTCAA
1 GCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAGGCGTGCGGGTGCTCAG
* ** * *
33614533 TCAATTAGAAAGGTAGAATGCGTAAGCCTGGGATCAGCCCGATCCCCCCTTGCGTGCTATCGATC
66 CCAACCAGAAAGGCAGAATGCGCAAGCCTGGGATCAGCCCGATCCCCCCTTGCGTGCTATCGATC
* *
33614598 CTGCTGCTACAACCCTCAGTCCGATCCAATTTTAGACTAGGAATGAACTCCGTATGCCTAAGTCA
131 CTGCTGCCACAACCCTCAGTCCGATCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCA
* * * ***
33614663 ACCCACAAAATGAGCGGTCGGGCGCTGAGCCAACCGGAGAGGCATAATGTGCAAGCCAGGCATCG
196 ACCCACAAAACGAGCGGTCGAGCGCTGAGCCAACCAGAGAGGCATAATACACAAGCCAGGCATCG
* *
33614728 ACCTGATCCCCCTATGC-CTGCTGTCG-G-T-C-TC-GGTGCCACAACCCTCGGTTCGACTGG-
261 ACCTGATCCCCCTATGCAC-GCTGTCGCGCTCCATCTGCTGCCACAACCCTCGGTCCGACTGGA
* * *
33614785 GACTTAGACACGGAATGAACTCCCTATGCCTAAGCTAACCCATGAAACAGGCGTGCGGGTGCTCA
1 G-CTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAGGCGTGCGGGTGCTCA
* * * * * * * * *
33614850 GCCGACCGGACAGGCAGAATGCGCAAG-TTGGGGGTC-GATCGGGTCCCCCCTT-CTGTGCTGTC
65 GCCAACCAGAAAGGCAGAATGCGCAAGCCT-GGGATCAG-CCCGATCCCCCCTTGC-GTGCTATC
* * ** * * * *
33614912 GATCCTGCTGCCACAACCCTCCGTCTGATCTGATCTTAGATTGGGGATGAACTTCGTATGCCTAA
127 GATCCTGCTGCCACAACCCTCAGTCCGATCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAA
** * * * * *
33614977 GTCAACCCATGAAACGAGC-GTGCGAGTGCTCGA-CCGATCAGAGAGGCATAATACATAAGTCAG
192 GTCAACCCACAAAACGAGCGGT-CGAGCGCT-GAGCCAACCAGAGAGGCATAATACACAAGCCAG
* * * *
33615040 GGATC-AGTCTGGTCCCCCTCTGCACGCTGTCGATCCCGCTGCCAGTCTTGCTGCCACAACCCTC
255 GCATCGA-CCTGATCCCCCTATGCACGCTGTCG----CGCT-CCA-TC-TGCTGCCACAACCCTC
33615104 GGTCCGACTGGA
312 GGTCCGACTGGA
* * *
33615116 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAAC-GAGCGTGCGGGCGCTCA
1 GCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAG-GCGTGCGGGTGCTCA
33615180 G
65 G
33615181 TCGATCGAAA
Statistics
Matches: 321, Mismatches: 53, Indels: 31
0.79 0.13 0.08
Matches are distributed among these distances:
317 7 0.02
318 223 0.69
319 3 0.01
323 1 0.00
324 1 0.00
326 1 0.00
328 2 0.01
329 1 0.00
330 81 0.25
331 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (323 bp):
GCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAGGCGTGCGGGTGCTCAG
CCAACCAGAAAGGCAGAATGCGCAAGCCTGGGATCAGCCCGATCCCCCCTTGCGTGCTATCGATC
CTGCTGCCACAACCCTCAGTCCGATCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCA
ACCCACAAAACGAGCGGTCGAGCGCTGAGCCAACCAGAGAGGCATAATACACAAGCCAGGCATCG
ACCTGATCCCCCTATGCACGCTGTCGCGCTCCATCTGCTGCCACAACCCTCGGTCCGACTGGA
Found at i:33617091 original size:26 final size:26
Alignment explanation
Indices: 33617053--33617105 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33617043 CTGGTCCAAT
*
33617053 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
33617079 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
33617105 C
1 C
33617106 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:33617373 original size:158 final size:158
Alignment explanation
Indices: 33617079--33617573 Score: 511
Period size: 158 Copynumber: 3.1 Consensus size: 158
33617069 ACTTCGTATG
* *
33617079 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * *
33617144 C-AGCCGGAGAGGCAGAATGCGCAAGCCGGGGA-CTGGCCCGATCCCCCCTGCATGCTGTC-GAT
66 CGA-TCGGAGAGGCAGAATGCGCAAGCCGGGGATC-GGCCCGATCCCCCCTGCGTGCTGCCTG-T
* * *
33617206 CCTGTTGCCACAACCTTCGGTCCGGTCCGAT
128 CCTGCTGCCACAACCCTCGGTCCGGTCAGAT
* ** * * *
33617237 CTTAGAC-TGGGAATGAATTCCATATGCCTAAGTTAACCCACGAAATGAGCGTGTGGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * ** *
33617301 CCGATCGGAGAGGCAGAATGCGCAGGTCGAAGATCGGCCCGATCCCCCCTACGTGCTGCCTGT-C
65 CCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGCCTGTCC
* * * **
33617365 TCGCTGCCACAACCCTCGATCTGG-CTGGGG
130 T-GCTGCCACAACCCTCGGTCCGGTC-AGAT
* ** * * *
33617395 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATAAAACGGGCGTGCGGACGCTTAGC
1 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
33617460 CGATCGGAGAGGCAGAATGCACAAGCCGGGGATAGGCCCGGTCCCCACTGCGTGCTACCAT-TCC
66 CGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGCC-TGTCC
* * * *
33617524 TGCTACCGCAACCCTCCGTTCGGTCAGAT
130 TGCTGCCACAACCCTCGGTCCGGTCAGAT
33617553 CTTAGAC-TGGGAATGAACTCC
1 CTTAGACAT-GGAATGAACTCC
33617574 GTACGCTTAG
Statistics
Matches: 273, Mismatches: 53, Indels: 22
0.78 0.15 0.06
Matches are distributed among these distances:
157 5 0.02
158 260 0.95
159 8 0.03
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.18
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGCCTGTCCT
GCTGCCACAACCCTCGGTCCGGTCAGAT
Found at i:33618200 original size:11 final size:11
Alignment explanation
Indices: 33618184--33618210 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
33618174 CGGTTAGGCT
33618184 CTCCGGTGATG
1 CTCCGGTGATG
33618195 CTCCGGTGATG
1 CTCCGGTGATG
33618206 CTCCG
1 CTCCG
33618211 ACGATGGTGC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.07, C:0.33, G:0.33, T:0.26
Consensus pattern (11 bp):
CTCCGGTGATG
Found at i:33618324 original size:26 final size:26
Alignment explanation
Indices: 33618286--33618338 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33618276 GGCTCAAACT
33618286 CTTAGACTGGGAATGAACTACGTATG
1 CTTAGACTGGGAATGAACTACGTATG
*
33618312 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTACGTATG
33618338 C
1 C
33618339 CAAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:33618674 original size:25 final size:26
Alignment explanation
Indices: 33618628--33618679 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
33618618 CTGGTTGAAA
33618628 CTTAGACTGGTAATGAACTCCGTATG
1 CTTAGACTGGTAATGAACTCCGTATG
*
33618654 CTTAGACTGG-GATGAACTCCGTATG
1 CTTAGACTGGTAATGAACTCCGTATG
33618679 C
1 C
33618680 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 15 0.60
26 10 0.40
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGTAATGAACTCCGTATG
Found at i:33618835 original size:190 final size:194
Alignment explanation
Indices: 33618539--33618915 Score: 505
Period size: 190 Copynumber: 2.0 Consensus size: 194
33618529 TTCAACCGAT
* *** * *
33618539 CGGAGGGGCAGAATGCGCAAGCCAGGGATCAGCTCGGTCCCCCTTGTGTGCTGTCGATCCTGCTG
1 CGGAGAGGCAGAATGCGCAAGCCAGGGATCAGCTCAACCCCCCTTGTGT-CTGCCGATCCTACTG
* * * * * * *
33618604 CCGTAACCCTTGGTCTGGTTGAAACTTAGACTGGTAATGAACTCCGTATGCTTAGAC-TGGGATG
65 CCGCAACCCTCGATCCGATTGAAACTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATG
* *
33618668 AACTCCGTATGCCTAAGTCAA-CC-C-ATGAGCGTACGGGCGCTCAATCGATCGGAAAGGTCGAC
130 AACTCCGTATGCCTAAGCCAACCCACAACGAGCGTACGGGCGCTCAATCGATCGGAAAGGTCGAC
*
33618730 CGGAGAGGCAGAATGCGCAAG-CAGGGGATCGGCTCAACCCCCCTATGTGT-TGCCGATCCTACT
1 CGGAGAGGCAGAATGCGCAAGCCA-GGGATCAGCTCAACCCCCCT-TGTGTCTGCCGATCCTACT
* *
33618793 GCCGCAACCCTCGATCCGATTGGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAAT
64 GCCGCAACCCTCGATCCGATTGAAACTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAAT
*
33618858 GAACTTCGTATGCCTAAGCCAACCCACGAACGAGCGTACGGGCGCTCAATCGATCGGA
129 GAACTCCGTATGCCTAAGCCAACCCAC-AACGAGCGTACGGGCGCTCAATCGATCGGA
33618916 GAGGCAGAAT
Statistics
Matches: 160, Mismatches: 19, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
190 63 0.39
191 61 0.38
192 7 0.04
193 1 0.01
195 28 0.17
ACGTcount: A:0.24, C:0.27, G:0.28, T:0.21
Consensus pattern (194 bp):
CGGAGAGGCAGAATGCGCAAGCCAGGGATCAGCTCAACCCCCCTTGTGTCTGCCGATCCTACTGC
CGCAACCCTCGATCCGATTGAAACTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGA
ACTCCGTATGCCTAAGCCAACCCACAACGAGCGTACGGGCGCTCAATCGATCGGAAAGGTCGAC
Found at i:33618847 original size:26 final size:26
Alignment explanation
Indices: 33618818--33618870 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33618808 CCGATTGGAT
33618818 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
33618844 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
33618870 C
1 C
33618871 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:33619195 original size:26 final size:26
Alignment explanation
Indices: 33619159--33619211 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
33619149 CTGATCCAAT
*
33619159 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
33619185 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
33619211 C
1 C
33619212 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:33620632 original size:26 final size:26
Alignment explanation
Indices: 33620603--33620655 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33620593 CTGGTCCGAT
33620603 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
33620629 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCCGTATG
33620655 C
1 C
33620656 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:33621056 original size:159 final size:158
Alignment explanation
Indices: 33620628--33621079 Score: 451
Period size: 159 Copynumber: 2.9 Consensus size: 158
33620618 AACTCCGTAT
* * *
33620628 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAG
* * * * *
33620693 CC-AGCCAGAGAGGCAGAATGCGCAAGCCAGGGACCGACCCGGTCCCCCCTGTGTGCTGTCAATC
66 CCGA-CCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCCTGCGTGCTGCCAATC
* * *
33620757 CTGTTGCCACAACCCTCAGTCTAGTCCGA
130 CTGCTACCACAACCCTCAGTCCAGTCCGA
* * * ** * *
33620786 TCTTAGAC-TGGGAATGAATTTCGTATGCCTAAGTTAACCCACGAAACGAGCATGTGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCA
** * * * * ** * *
33620850 GCCGGTCGGAGAGACATAATGCGCAGGCCAGAGATCGGCCCAATCCCCCCCTGCATGCTGCCTAT
65 GCCGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGT-CCCCCCTGCGTGCTGCCAAT
* * * * *
33620915 CCCGCTACCACAACCCTCGGTCC-GGCTGGG
129 CCTGCTACCACAACCCTCAGTCCAGTC-CGA
* * * *
33620945 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAGGAAACGGGCATGCGGGCGCTTAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAG
* * * * * * *
33621010 CCGACCGGAGAGGCAGAATGCGTAAGTCGGGGATAGGCTCGGTCCCCCTTGCGTGCTGCCGATCC
66 CCGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCCTGCGTGCTGCCAATCC
33621075 TGCTA
131 TGCTA
33621080 TTGCAATCCT
Statistics
Matches: 229, Mismatches: 60, Indels: 10
0.77 0.20 0.03
Matches are distributed among these distances:
157 1 0.00
158 109 0.48
159 118 0.52
160 1 0.00
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAG
CCGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCCTGCGTGCTGCCAATCC
TGCTACCACAACCCTCAGTCCAGTCCGA
Found at i:33621140 original size:26 final size:26
Alignment explanation
Indices: 33621104--33621156 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
33621094 TCGGTCGGTT
*
33621104 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
33621130 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
33621156 C
1 C
33621157 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:33621875 original size:26 final size:26
Alignment explanation
Indices: 33621837--33621889 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33621827 GGCTCAAACT
33621837 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
33621863 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
33621889 C
1 C
33621890 CAAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:33622226 original size:25 final size:26
Alignment explanation
Indices: 33622180--33622231 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
33622170 CTGGTTGAAA
33622180 CTTAGACTGGTAATGAACTCCGTATG
1 CTTAGACTGGTAATGAACTCCGTATG
*
33622206 CTTAGACTGG-GATGAACTCCGTATG
1 CTTAGACTGGTAATGAACTCCGTATG
33622231 C
1 C
33622232 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 15 0.60
26 10 0.40
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGTAATGAACTCCGTATG
Found at i:33622414 original size:26 final size:26
Alignment explanation
Indices: 33622376--33622428 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33622366 TCGATCGGAT
33622376 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCTATATG
*
33622402 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCTATATG
33622428 C
1 C
33622429 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTATATG
Found at i:33623658 original size:158 final size:158
Alignment explanation
Indices: 33623234--33623701 Score: 466
Period size: 157 Copynumber: 3.0 Consensus size: 158
33623224 CGGTCCAGTT
* * *
33623234 GCCACAACCCTCGGTCCGATCGGGGCTTACACATGGAATGAACTCTGTATGCCTAAGCCAACCCA
1 GCCACAACCCTCGGTCCGATTGGGGCTTAGACATGGAATGAACT-TCTATGCCTAAGCCAACCCA
* * * * * *
33623299 CGAAATGAGTGTACCGGCATTCAGCCGAT-CGGAGGGGCAGAATGCACAAGCTGGGGATC-GGCT
65 CGAAATGAGCGTGCGGGCACTCAGCCG-TCCGGAGGGGCAGAATGCGCAAGCTGGGGATCAGCCT
* * *
33623362 CGATCCCCCCTACGTGCTATCTATCCTGCT
129 CGATCCCCCCTACGTGCTATCGATCCCGCC
* * ** * *
33623392 GCCGCAACCCTCGGTCCGA-TCGATCTTAGAC-TAGGAATGAACTCCGTATGCCTAAGTCAACCC
1 GCCACAACCCTCGGTCCGATTGGGGCTTAGACAT-GGAATGAACTTC-TATGCCTAAGCCAACCC
* ** * * * * * * *
33623455 ACGAAATGAGCGTGTGGGGGCTGAGCCGGCCGAAGAGGCATAATGCGCAAGCCGAGGATCAGCCT
64 ACGAAATGAGCGTGCGGGCACTCAGCCGTCCGGAGGGGCAGAATGCGCAAGCTGGGGATCAGCCT
* * *
33623520 -GATCCCCCTTGCGTGCTGTCGGA-CCCGCC
129 CGATCCCCCCTACGTGCTATC-GATCCCGCC
*
33623549 GCCACAACCCTCGATCCGATTGGGGCTTAGACATGGAATGAACTGTCTATGCCTAAGCCAACCCA
1 GCCACAACCCTCGGTCCGATTGGGGCTTAGACATGGAATGAACT-TCTATGCCTAAGCCAACCCA
* * * *
33623614 TGAAACGGGCGTGCGGGCACTCAACCGTCCGGAGGGGCAGAATGCGCAAGCTGGGGATCA-CC-C
65 CGAAATGAGCGTGCGGGCACTCAGCCGTCCGGAGGGGCAGAATGCGCAAGCTGGGGATCAGCCTC
** * *
33623677 GGCCCCCCCTGCGTGCTACCGATCC
130 GATCCCCCCTACGTGCTATCGATCC
33623702 TACTGCTGTA
Statistics
Matches: 243, Mismatches: 57, Indels: 21
0.76 0.18 0.07
Matches are distributed among these distances:
156 3 0.01
157 134 0.55
158 104 0.43
159 2 0.01
ACGTcount: A:0.23, C:0.32, G:0.28, T:0.18
Consensus pattern (158 bp):
GCCACAACCCTCGGTCCGATTGGGGCTTAGACATGGAATGAACTTCTATGCCTAAGCCAACCCAC
GAAATGAGCGTGCGGGCACTCAGCCGTCCGGAGGGGCAGAATGCGCAAGCTGGGGATCAGCCTCG
ATCCCCCCTACGTGCTATCGATCCCGCC
Found at i:33623760 original size:26 final size:26
Alignment explanation
Indices: 33623731--33623781 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
33623721 CCGATCTGAT
33623731 CTTAAACT-GGGAATGAACTCCGTATG
1 CTTAAACTAGGG-ATGAACTCCGTATG
* *
33623757 CTTAGACTAGGGATGAACTCTGTAT
1 CTTAAACTAGGGATGAACTCCGTAT
33623782 ACCGAAGTCA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAAACTAGGGATGAACTCCGTATG
Found at i:33626750 original size:26 final size:26
Alignment explanation
Indices: 33626712--33626764 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
33626702 GGCTCAAAAT
33626712 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
33626738 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
33626764 C
1 C
33626765 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:33628289 original size:26 final size:26
Alignment explanation
Indices: 33628253--33628305 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
33628243 CTAGTTCGAT
* *
33628253 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAACGAACTCCATATG
*
33628279 CTTAGACTGGGGACGAACTCCATATG
1 CTTAGACTGGGAACGAACTCCATATG
33628305 C
1 C
33628306 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAACGAACTCCATATG
Found at i:33629299 original size:159 final size:159
Alignment explanation
Indices: 33629004--33629427 Score: 426
Period size: 159 Copynumber: 2.7 Consensus size: 159
33628994 ATGTTTGCTT
* * *
33629004 AGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGTGTGCAGGCGCTCAACCGA
1 AGACAGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAACCGA
* * * *** * * **
33629069 CCGGAGAGGCAGAATGCGCAAGTCAGGGATTGGCCCGATCCCCCTCTATGTACTGTCGATCCTGC
66 CCGGAGAGGCATAATGCACAAGTCGGGGATCAACCAGATCCCCCTCTACGTACTGTCGATCCCAC
* *
33629134 TACCACAACAGTCAGTCTGATCT-GATCTC
131 TACCACAACACTCAGTCTGA-CTGGAGCTC
* * * *
33629163 AGACCGGGAATGAACTCCGTATGCCTAAGTCAGCCCACGAAATGAGCGTGCGGGCGCTGAACCGA
1 AGACAGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAACCGA
* * * * *
33629228 CCGGAGAGGCATAATACACAAGTCGGGGATCAACTCAG-TCCCCCTCTGCGTGCTGTTGGTCCCA
66 CCGGAGAGGCATAATGCACAAGTCGGGGATCAAC-CAGATCCCCCTCTACGTACTGTCGATCCCA
* * * * *
33629292 CTGCCACAACCCTCAGTTTGACTGGGGCTT
130 CTACCACAACACTCAGTCTGACTGGAGCTC
* * * * * * *
33629322 AGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC-AAATGGGC-TACGGGTGCTCAGCCAA
1 AGACAGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAACCGA
* * * *
33629385 CCGAAGAGGC-TGAATGCACAAGCCGGGGATCAGCCTGATCCCC
66 CCGGAGAGGCAT-AATGCACAAGTCGGGGATCAACCAGATCCCC
33629428 TCTGTGTGCT
Statistics
Matches: 216, Mismatches: 45, Indels: 10
0.80 0.17 0.04
Matches are distributed among these distances:
156 3 0.01
157 45 0.21
158 9 0.04
159 157 0.73
160 2 0.01
ACGTcount: A:0.26, C:0.30, G:0.26, T:0.18
Consensus pattern (159 bp):
AGACAGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAACCGA
CCGGAGAGGCATAATGCACAAGTCGGGGATCAACCAGATCCCCCTCTACGTACTGTCGATCCCAC
TACCACAACACTCAGTCTGACTGGAGCTC
Found at i:33629525 original size:26 final size:26
Alignment explanation
Indices: 33629475--33629527 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
33629465 CTGATCCGAT
*
33629475 CTTAGACTGGGAATGAAGTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
33629501 CTTAGACTGCGG-ATGAAC-TCTGTATG
1 CTTAGACTG-GGAATGAACTTC-GTATG
33629527 C
1 C
33629528 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 2 0.08
26 20 0.83
27 2 0.08
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:33629892 original size:26 final size:26
Alignment explanation
Indices: 33629854--33629906 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
33629844 CTGGTCTGAT
33629854 CTTAGACAGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
*
33629880 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
33629906 C
1 C
33629907 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Found at i:33630238 original size:26 final size:26
Alignment explanation
Indices: 33630197--33630249 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
33630187 TCGATCTGAT
33630197 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
33630223 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
33630249 C
1 C
33630250 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:33634780 original size:26 final size:26
Alignment explanation
Indices: 33634742--33634793 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
33634732 GGCTCAAAAT
*
33634742 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
33634768 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
33634794 TCTAAGTCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:33635293 original size:26 final size:26
Alignment explanation
Indices: 33635242--33635294 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
33635232 CCGGTCCGAT
*
33635242 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
* * *
33635268 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
33635294 C
1 C
33635295 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:33635517 original size:171 final size:158
Alignment explanation
Indices: 33635407--33635938 Score: 395
Period size: 158 Copynumber: 3.4 Consensus size: 158
33635397 CCACTACCGG
*
33635407 TCCTGCTA-CCCTAACCCTCACTCCGGCTAGGGCTTAGACAT-GGAATGAACTCCGTATGCCTAA
1 TCCTGCTATCCC-AACCCTCACTCCGGCTAGAGCTTAGAC-TGGGAATGAACTCCGTATGCCTAA
* * * ** *
33635470 GCCAACCCACGAAATGAGCGTGCGGGCGCTCAGTCGGTCGGAGAGGCAAAATGTGCAAGCCGAGG
64 GTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCATAATGCACAAGCCGGGG
*
33635535 ATCAGCCCGGTCCCCCCTAAGTGCTGCCAA
129 ATCAGCCCGATCCCCCCTAAGTGCTGCCAA
* *** * * * *
33635565 TCCTGCTATCGCAACCCTTGTTCCGGTTTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGT
1 TCCTGCTATCCCAACCCTCACTCCGGCTAGAGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * *
33635630 CAACCCACAAAATGAGCGTGCGGGTGTTGAGCCGGTCGGAGAGGCATAATGCACAAGCCGGGGAT
66 CAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCATAATGCACAAGCCGGGGAT
* * * **
33635695 CGGCCCGATCCCCCTCTGCA-TGCTGTCGG
131 CAGCCCGATCCCCC-CT-AAGTGCTGCCAA
* * * * *
33635724 T-CT-C-ACTGCCACAACCC-CGA-TCTGGCTGGGGCTTAAACAT-GGAATGAACTCCCTATGCC
1 TCCTGCTA-T-CC-CAACCCTC-ACTCCGGCTAGAGCTTAGAC-TGGGAATGAACTCCGTATGCC
* * * * * * ** * * *
33635783 TAAGCCAACCTATGAAAT-AGGCATGCGGGTGCTCAACCGACCGGAGAGGCAGAATGCGCAAGCT
61 TAAGTCAACCCACGAAATGA-GCGTGCGGGCGCTCAGCCGGTCGGAGAGGCATAATGCACAAGCC
* * * ** **
33635847 GGGGATCGGCTCGAT-CCCCCTACGTGCTATCGG
125 GGGGATCAGCCCGATCCCCCCTAAGTGCTGCCAA
* * ** * *
33635880 TCCAGCTATCGCAACCCTCGGTCCGATCT-GATCTTAGACTGGGAATGAACTCCGTATGC
1 TCCTGCTATCCCAACCCTCACTCCG-GCTAGAGCTTAGACTGGGAATGAACTCCGTATGC
33635939 TTAGACTGGG
Statistics
Matches: 294, Mismatches: 62, Indels: 37
0.75 0.16 0.09
Matches are distributed among these distances:
156 19 0.06
157 38 0.13
158 217 0.74
159 19 0.06
160 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (158 bp):
TCCTGCTATCCCAACCCTCACTCCGGCTAGAGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
CAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCATAATGCACAAGCCGGGGAT
CAGCCCGATCCCCCCTAAGTGCTGCCAA
Found at i:33635768 original size:158 final size:159
Alignment explanation
Indices: 33635419--33635867 Score: 444
Period size: 158 Copynumber: 2.8 Consensus size: 159
33635409 CTGCTACCCT
33635419 AACCCTC-ACTCCGGCTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAA
1 AACCCTCGA-TCCGGCTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAA
* * * * * *
33635483 ATGAGCGTGCGGGCGCTCAGTCGGTCGGAGAGGCAAAATGTGCAAGCCGAGGATCAGCCCGGTCC
65 ATGAGCGTGCGGGTGCTCAGCCGGTCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCGATCC
* * *
33635548 CCC-CTAAGTGCTGCCAATCCTGCTATCGC
130 CCCTCTAAGTGCTGCCAATCCTACTACCAC
* * * * ** * * *
33635577 AACCCTTGTTCCGGTTTGATCTTAGAC-TGGGAATGAACTCTGTATGCCTAAGTCAACCCACAAA
1 AACCCTCGATCCGGCTAGGGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAA
* * * *
33635641 ATGAGCGTGCGGGTGTTGAGCCGGTCGGAGAGGCATAATGCACAAGCCGGGGATCGGCCCGATCC
65 ATGAGCGTGCGGGTGCTCAGCCGGTCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCGATCC
* * ** *
33635706 CCCTCTGCA-TGCTGTCGGT-CTCACTGCCAC
130 CCCTCT-AAGTGCTGCCAATCCT-ACTACCAC
* * * * * *
33635736 AACCC-CGATCTGGCTGGGGCTTAAACATGGAATGAACTCCCTATGCCTAAGCCAACCTATGAAA
1 AACCCTCGATCCGGCTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA
* * ** * * *
33635800 T-AGGCATGCGGGTGCTCAACCGACCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCTCGATCC
66 TGA-GCGTGCGGGTGCTCAGCCGGTCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCGATCC
33635864 CCCT
130 CCCT
33635868 ACGTGCTATC
Statistics
Matches: 233, Mismatches: 51, Indels: 14
0.78 0.17 0.05
Matches are distributed among these distances:
157 2 0.01
158 211 0.91
159 19 0.08
160 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.19
Consensus pattern (159 bp):
AACCCTCGATCCGGCTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA
TGAGCGTGCGGGTGCTCAGCCGGTCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCGATCCC
CCTCTAAGTGCTGCCAATCCTACTACCAC
Found at i:33635941 original size:26 final size:26
Alignment explanation
Indices: 33635912--33635964 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
33635902 CCGATCTGAT
33635912 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
33635938 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
33635964 C
1 C
33635965 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:33636328 original size:26 final size:26
Alignment explanation
Indices: 33636290--33636342 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
33636280 CCGGTTCGAT
*
33636290 CTTAGACTGGGAATGAACTCTTTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
33636316 CTTAGACAT-GGAATTAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCTGTATG
33636342 C
1 C
33636343 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.21, T:0.34
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:33636684 original size:159 final size:158
Alignment explanation
Indices: 33636315--33636760 Score: 479
Period size: 157 Copynumber: 2.8 Consensus size: 158
33636305 AACTCTTTAT
* * * **
33636315 GCTTAGACATGGAATTAACTCTGTATGCCTAAGCCAACCCATGTAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAAGCGCTCAG
* * * * *
33636380 TCGATCGGAGAGGTAGAATGCATAAGTCAGGGATCGGCTCGGTCCCCCCTGCGTGCTGTCGATCC
66 CCGATCGGAGAGGTAGAATGCACAAGCCGGGGATCGGCTCGGTCCCCCCTGCGTGCTGCCGATCC
** * * *
33636445 TGCTACCGCAACCCTCGGTCTGGTCCGA
131 CACTACCACAACCCTCGGTCCGATCCGA
* * * * *
33636473 TCTTAGAC-TGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAAGCGCTGAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAAGCGCTCAG
* * * * *
33636537 CCGACCGGAGAGGCATAATGCGCAAGCCGGGGATCGGC-CTGGTCCCCCTCTGCGTGCTGCCGGT
66 CCGATCGGAGAGGTAGAATGCACAAGCCGGGGATCGGCTC-GGTCCCCC-CTGCGTGCTGCCGAT
* * ** *
33636601 CCCATTGCCACAACCCTCGGTCCGATTGGG
129 CCCACTACCACAACCCTCGGTCCGATCCGA
*
33636631 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAC-AGGCGTGCGGAA--GCT
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGA-GCGTGC--AAGCGCT
* * * * * *
33636693 CAGCCGGTCGGAGAGGTAGAATGCACAAGCCGGGGATCGACTCGATCCCCTCTGCATGCTACCGA
63 CAGCCGATCGGAGAGGTAGAATGCACAAGCCGGGGATCGGCTCGGTCCCCCCTGCGTGCTGCCGA
33636758 TCC
128 TCC
33636761 TGCTGTCGTA
Statistics
Matches: 234, Mismatches: 47, Indels: 14
0.79 0.16 0.05
Matches are distributed among these distances:
156 1 0.00
157 85 0.36
158 62 0.26
159 83 0.35
160 1 0.00
161 2 0.01
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAAGCGCTCAG
CCGATCGGAGAGGTAGAATGCACAAGCCGGGGATCGGCTCGGTCCCCCCTGCGTGCTGCCGATCC
CACTACCACAACCCTCGGTCCGATCCGA
Found at i:33636820 original size:26 final size:26
Alignment explanation
Indices: 33636790--33636842 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
33636780 CCATTCTGAT
33636790 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
33636816 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
33636842 C
1 C
33636843 CTAGCGCTCA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:33638278 original size:695 final size:696
Alignment explanation
Indices: 33636846--33638279 Score: 2232
Period size: 695 Copynumber: 2.1 Consensus size: 696
33636836 CGTATGCCTA
* ** *
33636846 GCGCTCAGTCGACCAGAGAGGCAGGATGCGCAAGCCAAGGATCGAACGGGTGGTAGATGGGTTCA
1 GCGCTCAGCCGACCAGAGAGGCAGGATGCGCAAGCCGGGGATCAAACGGGTGGTAGATGGGTTCA
* * *
33636911 AGCATATCTTCATATTTCTTCCATGCCAATGCCATTTTTATGGCTTTTAAATTCATACAATGGTC
66 AGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* ** * * *
33636976 CCCTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACCTGTTTTCTATTTTTCATGATTTTTGGA
131 CCCTAACCCTTCATGCAAAGTTTCATGGCAAGACGACCCGTTTTCTATTTTTCACGATTTTTGAA
* * *
33637041 ACTTTTTACGGTTCGGGATTTTTTAAAAATTTTTTAGAAAGATTTTTGTCCCCAAATTTGGTAGA
196 ACTTTTTACAGTTCGAGATTTTTTAAAAATTTTTTAGAAAGAGTTTTGTCCCCAAATTTGGTAGA
* *
33637106 GGCGATCCTTGTATTTTTGTTGGCATGCCAAAAAAAATTTAGCTAAAAACTCAAAGTGGAGAAGA
261 GGAGATCCTTGTATTTTTGTTGGCATGCCAAAAAAAATTCAGCTAAAAACTCAAAGTGGAGAAGA
33637171 TTTTGTGACGGTTTCAAAAAAGTATCCCCATTTCAGACACTTTAATGGCTCCTGGCAGCAAACCT
326 TTTTGTGACGGTTTCAAAAAAGTATCCCCATTTCAGACACTTTAATGGCTCCTGGCAGCAAACCT
*
33637236 ATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGTGGCCA
391 ATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCA
* *
33637301 ATATAAGGGCCAAGACCAGCACCCATTACACATCATGTGCGCACACCTTCCCGGCCCCCCAATCG
456 ATATAAGGGCCAAGACCAGCACCCATTACACATCATGTGCGAACACCTCCCCGGCCCCCCAATCG
* * * * *
33637366 TCGAAACCTCCAATGCCGTCGGTTAGGCTCTTCGGTGATGCTCCGATGATGGTGCCTCGGGCCAA
521 TCGAAACCCCCAATACCGCCGGTTAGGCTCTCCGGTGATGCTCCGATGATGGTGCCCCGGGCCAA
*
33637431 AAAAATGCGACACCAGCACATGCTTGAGCCCAGCATGTGCACCGTGGCTCAAAATATTAGACTGG
586 AAAAATGCGACACCAGCACATGCCTGAGCCCAGCATGTGCACCGTGGCTCAAAATATTAGACTGG
* *
33637496 GAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGG
651 GAATGAACTCTGTATGCCTAAGCCAACCCACAAAACGAGCATGCGG
* * ** *
33637542 GCGCTTAGCCGACCAGAGAAGCAGGATGCGCAAATCGGGGATCAAACGGGTGGTAGGTGGGTTCA
1 GCGCTCAGCCGACCAGAGAGGCAGGATGCGCAAGCCGGGGATCAAACGGGTGGTAGATGGGTTCA
* *
33637607 AGCACGTCTTCATATTTCTGCCATGCCAATGTCATTTTTAT-GCTTGTAAATTCATACAATGGTC
66 AGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
*
33637671 CCCTAACCCTTCATGCAAAGTTTCGTGGCAAGACGACCCGTTTTCTATTTTTCACGATTTTTGAA
131 CCCTAACCCTTCATGCAAAGTTTCATGGCAAGACGACCCGTTTTCTATTTTTCACGATTTTTGAA
* * * **
33637736 ACTTTTTGCAGTTTGAGATTTTTTGAATTTTTTTTAGAAAGAGTTTTGTCCCCAAATTTGGTAGA
196 ACTTTTTACAGTTCGAGATTTTTTAAAAATTTTTTAGAAAGAGTTTTGTCCCCAAATTTGGTAGA
* * *
33637801 GGAGATCCTTGTATTTTTTTTGGCATG-CACAAAAAACTTCAGCTAAAAACTCGAAGTGGAGAAG
261 GGAGATCCTTGTATTTTTGTTGGCATGCCA-AAAAAAATTCAGCTAAAAACTCAAAGTGGAGAAG
*
33637865 ATTTTGTGATC-GTTTCAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTCCTGGCAGCAAAC
325 ATTTTGTGA-CGGTTTCAAAAAAGTATCCCCATTTCAGACACTTTAATGGCTCCTGGCAGCAAAC
33637929 CTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGC
389 CTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGC
* *
33637994 CAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGAACACCTCCCCGGCCCCCTAA
454 CAATATAAGGGCCAAG-ACCAGCACCCATTACACATCATGTGCGAACACCTCCCCGGCCCCCCAA
* * *
33638059 TCGTTGAAACCCCCAATACTGCCGGTTAGGCTCTCCGGTGATGCTCCGGTGAT-GTGCCCCGGGC
518 TCGTCGAAACCCCCAATACCGCCGGTTAGGCTCTCCGGTGATGCTCCGATGATGGTGCCCCGGGC
* * *
33638123 CAAAAAAATGTGGCACCAGCACATGCCTGAGCCCAGCATGTGCACCGTGGCTCAAAATCTTAGAC
583 CAAAAAAATGCGACACCAGCACATGCCTGAGCCCAGCATGTGCACCGTGGCTCAAAATATTAGAC
* *
33638188 AT-GGAATGAACTCTGTATGCCTAAGCCAACCCATAAAATGAGCATGCGG
648 -TGGGAATGAACTCTGTATGCCTAAGCCAACCCACAAAACGAGCATGCGG
* * * * *
33638237 GCGCTCGGCC-AGTCAGAGAGGTAGAATGTGCAAGCCGGGGATC
1 GCGCTCAGCCGA-CCAGAGAGGCAGGATGCGCAAGCCGGGGATC
33638280 GACCTGGTCT
Statistics
Matches: 668, Mismatches: 65, Indels: 11
0.90 0.09 0.01
Matches are distributed among these distances:
694 3 0.00
695 480 0.72
696 185 0.28
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (696 bp):
GCGCTCAGCCGACCAGAGAGGCAGGATGCGCAAGCCGGGGATCAAACGGGTGGTAGATGGGTTCA
AGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
CCCTAACCCTTCATGCAAAGTTTCATGGCAAGACGACCCGTTTTCTATTTTTCACGATTTTTGAA
ACTTTTTACAGTTCGAGATTTTTTAAAAATTTTTTAGAAAGAGTTTTGTCCCCAAATTTGGTAGA
GGAGATCCTTGTATTTTTGTTGGCATGCCAAAAAAAATTCAGCTAAAAACTCAAAGTGGAGAAGA
TTTTGTGACGGTTTCAAAAAAGTATCCCCATTTCAGACACTTTAATGGCTCCTGGCAGCAAACCT
ATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCA
ATATAAGGGCCAAGACCAGCACCCATTACACATCATGTGCGAACACCTCCCCGGCCCCCCAATCG
TCGAAACCCCCAATACCGCCGGTTAGGCTCTCCGGTGATGCTCCGATGATGGTGCCCCGGGCCAA
AAAAATGCGACACCAGCACATGCCTGAGCCCAGCATGTGCACCGTGGCTCAAAATATTAGACTGG
GAATGAACTCTGTATGCCTAAGCCAACCCACAAAACGAGCATGCGG
Found at i:33638895 original size:26 final size:26
Alignment explanation
Indices: 33638857--33638909 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33638847 CCAGTCCGAT
*
33638857 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
33638883 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
33638909 C
1 C
33638910 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:33639013 original size:185 final size:186
Alignment explanation
Indices: 33638698--33639076 Score: 478
Period size: 185 Copynumber: 2.0 Consensus size: 186
33638688 CCAACTGGGT
* * * * *
33638698 CTTAGACATGGAGTGAACTCTGTATGGCTAAGCCAACCCACAAAATGAGCGTGCGGGTGCTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAAC
* * * * *
33638763 CGGCTGGAGAGGTAGAATGCACAAGTTGGGGATCAGCTCGGTTCCCTCCTGCGTGCCGCCGATCC
66 CGGCCGGAGAGGTAGAATGCACAAGCTGGGGATCAGCTCGGATCCCCCCTACGTGCCGCCGATCC
* ** * * *
33638828 TGCTGTCGTAACCCTTGGTCCAG-TCCGATCTTAGACTGGGAATGAACTCTGTA-TG
131 TGCTGCCACAACCCTCGGT-CAGATCCGATCTTAGACTGAGAATGAACTCCGTATTG
**
33638883 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAAC
* * * *
33638948 CGGCCGGAGAGGTAGAATGCGCAAGCTGGGGA-CCGCCTC-GATCACCCCCTACGTGCTGTCGAT
66 CGGCCGGAGAGGTAGAATGCACAAGCTGGGGATCAG-CTCGGATC-CCCCCTACGTGCCGCCGAT
* * *
33639011 CCTGCTGCCACAACCCTCGGTCTGATTCGATCTTAGACTGAGAATGAACTCCGTATTT
129 CCTGCTGCCACAACCCTCGGTCAGATCCGATCTTAGACTGAGAATGAACTCCGTATTG
33639069 CTTAGACA
1 CTTAGACA
33639077 ACCAACAAAA
Statistics
Matches: 165, Mismatches: 25, Indels: 7
0.84 0.13 0.04
Matches are distributed among these distances:
184 7 0.04
185 149 0.90
186 9 0.05
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.22
Consensus pattern (186 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAAC
CGGCCGGAGAGGTAGAATGCACAAGCTGGGGATCAGCTCGGATCCCCCCTACGTGCCGCCGATCC
TGCTGCCACAACCCTCGGTCAGATCCGATCTTAGACTGAGAATGAACTCCGTATTG
Found at i:33639177 original size:159 final size:159
Alignment explanation
Indices: 33638883--33639238 Score: 412
Period size: 159 Copynumber: 2.2 Consensus size: 159
33638873 ACTCTGTATG
* * * * *
33638883 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGACAACCAACAAAACGAACGTACGGGCGCTCAGC
* * * *
33638948 CGGCCGGAGAGGTAGAATGCGCAAGCTGGGGACCGCCTCGATCACCCCCTACGTGCTGTCGATCC
66 CGGCCGAAGAGGCAGAATGAGCAAGCCGGGGACCGCCTCGATCACCCCCTACGTGCTGTCGATCC
* *
33639013 TGCTGCCACAACCCTCGGTCTGATTCGAT
131 CGCTGCCACAACCCTCGATCTGATTCGAT
** * *
33639042 CTTAGAC-TGAGAATGAACTCCGTATTTCTTAGACAACCAACAAAACGAACGTACGGGCGCTGAG
1 CTTAGACATG-GAATGAACTCCGTATGCCTAAGACAACCAACAAAACGAACGTACGGGCGCTCAG
* * * * * *
33639106 CCGGCCGAAGAGGCATAATGAGCAAGCCGGGGATCGACC-CGGTC-CCCCTCTGCGTGTTGTCGG
65 CCGGCCGAAGAGGCAGAATGAGCAAGCCGGGGACCG-CCTCGATCACCCC-CTACGTGCTGTCGA
** * **
33639169 TCCCGCTGCCACAACCCTCGATCTGGCTGGGG
128 TCCCGCTGCCACAACCCTCGATCTGATTCGAT
* *
33639201 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGACAACC
33639239 CACGACCGGA
Statistics
Matches: 162, Mismatches: 31, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
158 6 0.04
159 152 0.94
160 4 0.02
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGACAACCAACAAAACGAACGTACGGGCGCTCAGC
CGGCCGAAGAGGCAGAATGAGCAAGCCGGGGACCGCCTCGATCACCCCCTACGTGCTGTCGATCC
CGCTGCCACAACCCTCGATCTGATTCGAT
Found at i:33639371 original size:26 final size:26
Alignment explanation
Indices: 33639335--33639387 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
33639325 CTAGTCCAAT
* *
33639335 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
*
33639361 CTTAAACTGGGGATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
33639387 C
1 C
33639388 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:33639781 original size:316 final size:317
Alignment explanation
Indices: 33639361--33640020 Score: 845
Period size: 316 Copynumber: 2.1 Consensus size: 317
33639351 ACTTCGTATG
* * * * * * *
33639361 CTTAAACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATACGGGTGCTTAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCATACAGGCGCTGAGC
* *
33639426 CGACCGGAGAGGCAGAATCCGCAACCCAGGGATCGGCCCGATCCCCCTCTACATGCTATCGGTCT
66 CGACCGGAGAGGCAGAATCCGCAACCCAAGGATCGGCCCGATACCCCTCTACATGCTATCGGTCT
* * *
33639491 CGTTGCCACAACCTTTGGTCTAGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
131 CGCTGCCACAACCCTCGGTCTAGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
* * * * * * *
33639556 CCCATGTAATGGGCGTGCGGGTGCTCAACCGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGG
196 CCCACGAAACGAGCGTGCGGGCGCTCAACCAGCCGAAGAGGCAGAATGCGCAAGCCAGGGATCGG
* * **
33639621 CCCGAT-CCCCCTCCGTGCTACCGATCCTGCTATCGCAACCCTCAGTTCGGTCTGAT
261 CCCGATCCCCCCTCCGTGCTACCGATCCTGCTACCGCAACCCTCAGTCCGGTCCAAT
* *
33639677 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTTCAGGCGCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCATACAGGCGCTGAGC
* * * * * * *
33639742 CGACCGGAGAGGCATAATGCGTAAGCCAAGGATCGGCCCGATACTCCTCTGCGTGCTATCGGTCT
66 CGACCGGAGAGGCAGAATCCGCAACCCAAGGATCGGCCCGATACCCCTCTACATGCTATCGGTCT
* * * * * *
33639807 CGCTGCCATAACCCTCGTTTTGGTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
131 CGCTGCCACAACCCTCGGTCTAGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
* * * * *
33639872 CCCACGAAACGAGCGTGCGGGCGCTCAGCCAGTCGGAGAGGCAGAGTGCGCAAGTCAGGGATCGG
196 CCCACGAAACGAGCGTGCGGGCGCTCAACCAGCCGAAGAGGCAGAATGCGCAAGCCAGGGATCGG
* * ** * * *
33639937 CTCGATCCCCCCTGCGTGCTGTCGATCTTGCTACCGTAACCCTCGGTCCGGTCCAAT
261 CCCGATCCCCCCTCCGTGCTACCGATCCTGCTACCGCAACCCTCAGTCCGGTCCAAT
* *
33639994 CTTAGATTGGAAATGAACTCCGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
33640021 TTAGACTAGG
Statistics
Matches: 291, Mismatches: 52, Indels: 1
0.85 0.15 0.00
Matches are distributed among these distances:
316 226 0.78
317 65 0.22
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (317 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCATACAGGCGCTGAGC
CGACCGGAGAGGCAGAATCCGCAACCCAAGGATCGGCCCGATACCCCTCTACATGCTATCGGTCT
CGCTGCCACAACCCTCGGTCTAGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
CCCACGAAACGAGCGTGCGGGCGCTCAACCAGCCGAAGAGGCAGAATGCGCAAGCCAGGGATCGG
CCCGATCCCCCCTCCGTGCTACCGATCCTGCTACCGCAACCCTCAGTCCGGTCCAAT
Found at i:33639865 original size:159 final size:156
Alignment explanation
Indices: 33639373--33639981 Score: 578
Period size: 159 Copynumber: 3.9 Consensus size: 156
33639363 TAAACTGGGG
* * * * * * *
33639373 ATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATACGGGTGCTTAGTCGACCGGAGAGG
1 ATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGACCGGAGAGG
* * * * * * *
33639438 CAGAATCCGCAACCCAGGGATCGGCCCGATCCCCCTCTACATGCTATCGGTCTCGTTGCCACAAC
66 CAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCC-CTGCGTGCTATCGATCTCGCTACCACAAC
* * * * *
33639503 CTTTGGTCTAGCTAGGGCTTAGACATGGA
130 C-CTCGT-TTGGTTGGGCTTAGACATGGA
* * * * * * *
33639532 ATGAACTCCCTATGCCTAAGCCAACCCATGTAATGGGCGTGCGGGTGCTCAACCGGCCGAAGAGG
1 ATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGACCGGAGAGG
* * * * *
33639597 CAGAATGCGCAAGCCGGGGATCGGCCCGAT-CCCCCTCCGTGCTACCGATC-CTGCTATCGCAAC
66 CAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCCCTGCGTGCTATCGATCTC-GCTACCACAAC
* **
33639660 CCTCAGTTCGGTCTGATCTTAGAC-TGGGA
130 CCTC-GTTTGGT-TGGGCTTAGACAT-GGA
* * * * * *
33639689 ATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTTCAGGCGCTGAGCCGACCGGAGAGG
1 ATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGACCGGAGAGG
* * * * * * * *
33639754 CATAATGCGTAAGCCAAGGATCGGCCCGATACTCCTCTGCGTGCTATCGGTCTCGCTGCCATAAC
66 CAGAATGCGCAAGCCAGGGATCGGCCCGAT-CCCCCCTGCGTGCTATCGATCTCGCTACCACAAC
33639819 CCTCGTTTTGGTTGGGGCTTAGACATGGA
130 CCTCG-TTTGGTT-GGGCTTAGACATGGA
* *
33639848 ATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC-AGTCGGAGAG
1 ATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGA-CCGGAGAG
* * * * * **
33639912 GCAGAGTGCGCAAGTCAGGGATCGGCTCGATCCCCCCTGCGTGCTGTCGATCTTGCTACCGTAAC
65 GCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCCCTGCGTGCTATCGATCTCGCTACCACAAC
33639977 CCTCG
130 CCTCG
33639982 GTCCGGTCCA
Statistics
Matches: 359, Mismatches: 80, Indels: 23
0.78 0.17 0.05
Matches are distributed among these distances:
156 6 0.02
157 111 0.31
158 39 0.11
159 201 0.56
160 2 0.01
ACGTcount: A:0.22, C:0.31, G:0.27, T:0.20
Consensus pattern (156 bp):
ATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGACCGGAGAGG
CAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCCCTGCGTGCTATCGATCTCGCTACCACAACC
CTCGTTTGGTTGGGCTTAGACATGGA
Found at i:33640619 original size:159 final size:158
Alignment explanation
Indices: 33640227--33640622 Score: 437
Period size: 159 Copynumber: 2.5 Consensus size: 158
33640217 AACTCCGTAC
*
33640227 GCTTAGACATGGAATGAAC-CTCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCA
1 GCTTAGACATGGAATGAACTC-CATATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCA
* * * ** *
33640291 ATCGGCCAGAGAGGCAGAATGTGCAAGCCGAGGACTGACTTGATCCTACCCTGTGTGCTGTCGAT
65 ACCGGCCGGAGAGGCAGAATGTGCAAGCCGAGGACTGACTCGATCC-ACCCTACGTGCTGCCGAT
* *
33640356 CCTGCTACCGCAACCCTCAGTCTGGTCTGA
129 CCTGCTACCACAACCCTCAGTCCGGTCTGA
* * * * ** *
33640386 TCTTAGAC-TGCGAATGAACTCTATATGCCTAAGTCAACCCACGAAACGAGCGTTCGGGCACTGA
1 GCTTAGACATG-GAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCA
* * * *
33640450 GCCAGTCGGAGAGGCATAATGTGCAAGCC-AGGGA-TCGA-TCCGATCC-CCTTCTACGTGCTGC
65 ACCGGCCGGAGAGGCAGAATGTGCAAGCCGA-GGACT-GACT-CGATCCACC--CTACGTGCTGC
*
33640511 CGATCCTGCTACCACAACCCTCAGTCCGG-CTAGG
125 CGATCCTGCTACCACAACCCTCAGTCCGGTCT-GA
* * * *
33640545 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTACAGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCAA
33640610 CCGGCCGGAGAGG
66 CCGGCCGGAGAGG
33640623 TAGTGCGTAA
Statistics
Matches: 193, Mismatches: 35, Indels: 18
0.78 0.14 0.07
Matches are distributed among these distances:
157 2 0.01
158 7 0.04
159 181 0.94
160 3 0.02
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCAA
CCGGCCGGAGAGGCAGAATGTGCAAGCCGAGGACTGACTCGATCCACCCTACGTGCTGCCGATCC
TGCTACCACAACCCTCAGTCCGGTCTGA
Found at i:33640885 original size:710 final size:707
Alignment explanation
Indices: 33639519--33640935 Score: 1622
Period size: 710 Copynumber: 2.0 Consensus size: 707
33639509 TCTAGCTAGG
* * * * *
33639519 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGTAATGGGCGTGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCAA
* *
33639584 CCGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTCCGTGCTACCGATCCT
66 CCGGCCGAAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCTCCGTGCTACCGATCCT
* * *
33639649 GCTATCGCAACCCTCAGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
131 GCTACCGCAACCCTCAGTTCGGTCTGATCTTAGACTGCGAATGAACTCCATATGCCTAAGTCAAC
* * * *
33639714 CCACAAAATGAGCGTTCAGGCGCTGAGCCGACCGGAGAGGCATAATGCGTAAGCCAAGGATCGGC
196 CCACAAAACGAGCGTTCAGGCACTGAGCCGACCGGAGAGGCATAATGCGCAAGCCAAGGATCGAC
* * * * * * ** * *
33639779 CCGATACTCCTCTGCGTGCTATCGGTCTCGCTGCCATAACCCTCGTTTTGGTTGGGGCTTAGACA
261 CCGATACCCCTCTACGTGCTACCGATCTCGCTACCACAACCCTCGTTCCGGCTAGGGCTTAGACA
* * * *
33639844 TGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGTCGGA
326 TGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCGCTCAACCAGCCGGA
* * * * * ** **
33639909 GAGGCAGAGTGCGCAAGTCAGGGATCGGCTCGATCCCCCCTGCGTGCTGTCGATCTTGCTACCGT
391 GAGG-AGAGTGCGCAAGCCAGGGATCGACTCGATCCCCCCTACGTGCTGCCAATCCAGCTACCAC
* * *
33639974 AACCCTCGGTCCGGTCCAATCTTAGATTGGAAATGAACTCCGTATGCTTAGACTAGGGATGAACT
455 AACCCTCGGTCCGATCCAATCTTAGACTGGAAATGAACTCCGTATACTTAGACTAGGGATGAACT
*
33640039 CCGTATCCTAAGCCAACCCATGAAACGAGCATGCGGGCGCTCAGCCAGTCGGAGAGGCCGGCCGA
520 CCGTATCCTAAGCCAACCCATGAAACGAGCATGCGGGCGCTCAGCCAGTCGGAGAGGCCAGCCGA
** * * * * * *
33640104 AGAGGCAGAAAGTGCAAGCCGGGGATCGACTCTGTCCCCTCTGCGTGCTATCGATCCTGTTGCTG
585 AGAGGCAGAAAGCACAAGCCAGGGATAGACTCCGTCCCCTCTGCATGCTACCGATCCTGCTGCTG
** *
33640169 GTCCTGCT-CTCGTAACCCTCGGTCCGGTCT-GATCTTAGAC-TAGGAATGAACTCCGTAC
650 GTCCTGCTGC-CACAACCCTCGGTCCGG-CTAGAGCTTAGACAT-GGAATGAACTCCGTAC
*
33640227 GCTTAGACATGGAATGAAC-CTCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCA
1 GCTTAGACATGGAATGAACTC-CCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCA
* * ** ** **
33640291 ATCGGCC-AGAGAGGCAGAATGTGCAAGCCGAGGA-CTGACTTGATCCTACCCTGTGTGCTGTCG
65 ACCGGCCGA-AGAGGCAGAATGCGCAAGCCGAGGATC-GACCCGATCC--CCCTCCGTGCTACCG
*
33640354 ATCCTGCTACCGCAACCCTCAG-TCTGGTCTGATCTTAGACTGCGAATGAACTCTATATGCCTAA
126 ATCCTGCTACCGCAACCCTCAGTTC-GGTCTGATCTTAGACTGCGAATGAACTCCATATGCCTAA
* * * * *
33640418 GTCAACCCACGAAACGAGCGTTCGGGCACTGAGCC-AGTCGGAGAGGCATAATGTGCAAGCCAGG
190 GTCAACCCACAAAACGAGCGTTCAGGCACTGAGCCGA-CCGGAGAGGCATAATGCGCAAGCCAAG
* *
33640482 GATCGATCCGAT-CCCCTTCTACGTGCTGCCGATC-CTGCTACCACAACCCTCAG-TCCGGCTAG
254 GATCGACCCGATACCCC-TCTACGTGCTACCGATCTC-GCTACCACAACCCTC-GTTCCGGCTAG
* * *
33640544 GGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTACAGGTGCTCA
316 GGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCGCTCA
* * * * * * *
33640609 ACCGGCCGGAGAGG-TAGTGCGTAAGCCGGGGATCGACTTGGTCCCCCTTACGTGCTGCCAATCC
381 ACCAGCCGGAGAGGAGAGTGCGCAAGCCAGGGATCGACTCGATCCCCCCTACGTGCTGCCAATCC
** * * * * *
33640673 AGCTGTCACAACTCTCGGTGCGATCCGATCTTAGACTGGAAATGAACTGCGTATACTTAGACTGG
446 AGCTACCACAACCCTCGGTCCGATCCAATCTTAGACTGGAAATGAACTCCGTATACTTAGACTAG
* * * * * * * *
33640738 GGATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGG-GAGTTAGTCGGTCGTAG
511 GGATGAACTCCGTAT-CCTAAGCCAACCCATGAAACGAGCATGCGGGCG-CTCAGCCAGTCGGAG
* * * * * *
33640802 AGGCCAGCCGGAGAGGCATAATGCACAAGCCAGGGATTAG-C-CCGATCATCTTTTGCATGCTAC
574 AGGCCAGCCGAAGAGGCAGAAAGCACAAGCCAGGGA-TAGACTCCG-TC-CCCTCTGCATGCTAC
* * * *
33640865 CGATCTTGCTGCTTGTCCTGCTGCCACAACCCTCGGTCTGGCTAGGGCTTAGACATGGAATGAAC
636 CGATCCTGCTGCTGGTCCTGCTGCCACAACCCTCGGTCCGGCTAGAGCTTAGACATGGAATGAAC
33640930 TCCGTA
701 TCCGTA
33640936 TGCCTAAGCC
Statistics
Matches: 587, Mismatches: 104, Indels: 34
0.81 0.14 0.05
Matches are distributed among these distances:
707 3 0.01
708 199 0.34
709 80 0.14
710 302 0.51
711 3 0.01
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (707 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCAA
CCGGCCGAAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCTCCGTGCTACCGATCCT
GCTACCGCAACCCTCAGTTCGGTCTGATCTTAGACTGCGAATGAACTCCATATGCCTAAGTCAAC
CCACAAAACGAGCGTTCAGGCACTGAGCCGACCGGAGAGGCATAATGCGCAAGCCAAGGATCGAC
CCGATACCCCTCTACGTGCTACCGATCTCGCTACCACAACCCTCGTTCCGGCTAGGGCTTAGACA
TGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCGCTCAACCAGCCGGA
GAGGAGAGTGCGCAAGCCAGGGATCGACTCGATCCCCCCTACGTGCTGCCAATCCAGCTACCACA
ACCCTCGGTCCGATCCAATCTTAGACTGGAAATGAACTCCGTATACTTAGACTAGGGATGAACTC
CGTATCCTAAGCCAACCCATGAAACGAGCATGCGGGCGCTCAGCCAGTCGGAGAGGCCAGCCGAA
GAGGCAGAAAGCACAAGCCAGGGATAGACTCCGTCCCCTCTGCATGCTACCGATCCTGCTGCTGG
TCCTGCTGCCACAACCCTCGGTCCGGCTAGAGCTTAGACATGGAATGAACTCCGTAC
Found at i:33641120 original size:26 final size:26
Alignment explanation
Indices: 33641083--33641134 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
33641073 TGGTCTGATT
* *
33641083 TTAGACTAGGAATGAACTCCGTATGC
1 TTAGACTAGGAATGAAATCCATATGC
33641109 TTAGAC-ATGGAATGAAATCCATATGC
1 TTAGACTA-GGAATGAAATCCATATGC
33641135 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.35, C:0.17, G:0.21, T:0.27
Consensus pattern (26 bp):
TTAGACTAGGAATGAAATCCATATGC
Found at i:33641610 original size:26 final size:26
Alignment explanation
Indices: 33641581--33641632 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
33641571 CCGATCCGAT
33641581 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
33641607 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
33641633 TCTAAGTCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:33641964 original size:26 final size:26
Alignment explanation
Indices: 33641934--33641986 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
33641924 CCGTTCCGAT
33641934 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
33641960 CTTAGACTAGGGATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
33641986 C
1 C
33641987 CTAAGTGAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:33643135 original size:26 final size:26
Alignment explanation
Indices: 33643098--33643152 Score: 76
Period size: 26 Copynumber: 2.1 Consensus size: 26
33643088 TGGTCTGATT
* *
33643098 TTAGACTAGGAATGAACTCCGTATGC
1 TTAGACTAGGAATGAAATCCATATGC
33643124 TTAGAC-ATGGAATGAAATCCATATGC
1 TTAGACTA-GGAATGAAATCCATATGC
33643150 TTA
1 TTA
33643153 AGCCAACGCA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.35, C:0.16, G:0.20, T:0.29
Consensus pattern (26 bp):
TTAGACTAGGAATGAAATCCATATGC
Found at i:33643627 original size:26 final size:26
Alignment explanation
Indices: 33643598--33643649 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
33643588 CTGATCCGAT
33643598 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
33643624 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
33643650 TCTAAGTCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:33643981 original size:26 final size:26
Alignment explanation
Indices: 33643951--33644003 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
33643941 CCGTTCCGAT
33643951 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
33643977 CTTAGACTAGGGATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
33644003 C
1 C
33644004 CTAAGTGAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:33644661 original size:159 final size:159
Alignment explanation
Indices: 33644259--33644761 Score: 440
Period size: 158 Copynumber: 3.2 Consensus size: 159
33644249 AACTCTATAT
* * *
33644259 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * * * **** ***
33644324 CCGGCTAGAGAGGCAGAATGCGCAAGGCGGGGA-CCAGTTTGATCCCCCCTGCGTGCTGTTGATC
66 TCGGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGATCCCCCCTGCGTGCTCCAGATC
** * *
33644388 CTGCTACCACAACCTTCAGTCCAGTCTGA
131 CCACTACCACAACCCTCAGTCCAGACTGA
* * * * ** ** *
33644417 TCATAGACTTGGAATGAACTCCGTATGCATAAATCAACCCACGAAACGAGCGTGCGGAAACTGAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * * * * * * *
33644482 TAGGCCAAAGACGCATAATGCGAAAGTCGGGGATCGACCCGGTTCCCCTCTGCGTGCTACCAG-T
66 TCGGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGATCCCCCCTGCGTGCT-CCAGAT
* *
33644546 CCCACTGCCACAACCCTCAGTCC-GACTAGG
130 CCCACTACCACAACCCTCAGTCCAGACT-GA
* * * *
33644576 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * * * * * *
33644641 TCGGCCGGAGAGGCAGAATGCGCAAGCCGTGAATCGACCC-GATCCCTCCTGCATGCTACTGATC
66 TCGGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGATCCCCCCTGCGTGCTCCAGATC
* * * * * * *
33644705 CTATTACCGCAACCGTCGGTCCAGTCTAA
131 CCACTACCACAACCCTCAGTCCAGACTGA
*
33644734 TCTTAGAC-TGGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
33644762 TTAGACTGGG
Statistics
Matches: 264, Mismatches: 75, Indels: 12
0.75 0.21 0.03
Matches are distributed among these distances:
157 3 0.01
158 136 0.52
159 124 0.47
160 1 0.00
ACGTcount: A:0.26, C:0.30, G:0.25, T:0.19
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
TCGGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGATCCCCCCTGCGTGCTCCAGATC
CCACTACCACAACCCTCAGTCCAGACTGA
Found at i:33644771 original size:26 final size:26
Alignment explanation
Indices: 33644735--33644787 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
33644725 CCAGTCTAAT
33644735 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
** *
33644761 CTTAGACTGGGGTTGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
33644787 C
1 C
33644788 CTATGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:33646318 original size:196 final size:196
Alignment explanation
Indices: 33645969--33646324 Score: 446
Period size: 196 Copynumber: 1.8 Consensus size: 196
33645959 GATCCAATCT
* * * * *
33645969 TAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGATCTCTGTATGCCTAAGTCAACCCAT
1 TAGACTGGGAATGAACTCCATATACTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
* * ** *
33646034 GAAACGAGTGTGCAGACGCTCAGCCGGTCGGAGAGGCAAAATGCGCAAGCCAAGGATCCGTTCGG
66 GAAACGAGCGTGCAGACGCTCAGCCGGTCGGAGAGGCAAAATGCACAAGCCAAGGATCCGCCCGA
* * *
33646099 TCCCCCCTACCTACTGCCGATCCTGCTACTAGTCCTACTACTGCAACCCTCGATCCGGTTTGATC
131 TACCCCCTACATACTACCGATCCTGCTACTAGTCCTACTACTGCAACCCTCGATCCGGTTTGATC
33646164 A
196 A
33646165 TAGACTGGGAATGAACTCCATATACTTAGACAT-GGAATGAACTCCGTATGCCTAAG-CAAACCC
1 TAGACTGGGAATGAACTCCATATACTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTC-AACCC
* * * * *** *
33646228 ACGAAACGAGCGTGCGGGCGCTCAGCCGGTCGTAGAGGCAGAATGCACAAGCTGGGGATCGGCCC
64 ACGAAACGAGCGTGCAGACGCTCAGCCGGTCGGAGAGGCAAAATGCACAAGCCAAGGATCCGCCC
* ** * *
33646293 GATACCTCCTGTATGCTATCGATCCTGCTACT
129 GATACCCCCTACATACTACCGATCCTGCTACT
33646325 GCATCCCTCG
Statistics
Matches: 132, Mismatches: 26, Indels: 4
0.81 0.16 0.02
Matches are distributed among these distances:
195 1 0.01
196 130 0.98
197 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.25, T:0.21
Consensus pattern (196 bp):
TAGACTGGGAATGAACTCCATATACTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
GAAACGAGCGTGCAGACGCTCAGCCGGTCGGAGAGGCAAAATGCACAAGCCAAGGATCCGCCCGA
TACCCCCTACATACTACCGATCCTGCTACTAGTCCTACTACTGCAACCCTCGATCCGGTTTGATC
A
Found at i:33647124 original size:26 final size:26
Alignment explanation
Indices: 33647086--33647141 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
33647076 CAGATCTGAT
*
33647086 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
33647112 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
33647138 CTTA
1 CTTA
33647142 AGCCAACCCA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
26 26 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:33647311 original size:26 final size:26
Alignment explanation
Indices: 33647282--33647334 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33647272 CCGATCTGAT
*
33647282 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCCTATG
33647308 CTTAGACATGGAATGAACTCCCTATG
1 CTTAGACATGGAATGAACTCCCTATG
33647334 C
1 C
33647335 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCCTATG
Found at i:33647324 original size:196 final size:193
Alignment explanation
Indices: 33646990--33647581 Score: 688
Period size: 196 Copynumber: 3.1 Consensus size: 193
33646980 CCAATCAAAA
* ** * * *
33646990 AGGCAGAATGTGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCATGTTGTCGATCCTGCTACTGGT
1 AGGCAGAATGCGCAAGAAGCGGATCGGCCCGGTCCCCCCTGCGTGCT-TCGATCCTGC-ACTGGT
* * * **
33647055 CTTGCTGCCACAACTCTCGATCAGATCTGATCTTAGACTGGGAATGAACTCTATATGCTTAGACA
64 CCTGCTGTCACAACTCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACA
* * **
33647120 TGGAATGAACTCCGTATGCTTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGTCGGA
129 TGGAATGAACTCC-TATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGGA
33647185 G
193 G
* *
33647186 AGGCAGAATGCGCAAGAAGCGGA-CTGGCCCAGTCCCCCCTACGTGCTATCGATCCTGCCACTGG
1 AGGCAGAATGCGCAAGAAGCGGATC-GGCCCGGTCCCCCCTGCGTGCT-TCGATCCTG-CACTGG
*
33647250 TCCTGCTGTCGCAACTCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
63 TCCTGCTGTCACAACTCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
* *
33647315 ATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAGCCGACCGG
128 ATGGAATGAACT-CCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGG
33647380 AG
192 AG
* ** * *
33647382 ATGCAGAATGCGCAAGTCGGGGATCGACCCGGTCCCCCCTGCGTGC-T-G-T-C-G-A----TCC
1 AGGCAGAATGCGCAAGAAGCGGATCGGCCCGGTCCCCCCTGCGTGCTTCGATCCTGCACTGGTCC
* * * *
33647437 TGCTGTCACAAGC-CTTGGTCCGGTCTGATCTTTGACTGGGAATGAACTCCGTATGCTTAGAC-T
66 TGCTGTCACAA-CTCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAT
* * * * *
33647500 GGGGATGAACTCTCTATGCCTAAGTCAACCCACGAAACGAGCGTGCGTGCGCTCAGTCGACCAGA
130 -GGAATGAACTC-CTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGGA
33647565 G
193 G
*
33647566 AGGCAGGATGCGCAAG
1 AGGCAGAATGCGCAAG
33647582 TTGGGGATCG
Statistics
Matches: 347, Mismatches: 42, Indels: 26
0.84 0.10 0.06
Matches are distributed among these distances:
183 2 0.01
184 128 0.37
185 1 0.00
188 1 0.00
190 1 0.00
191 1 0.00
192 1 0.00
193 1 0.00
194 1 0.00
195 1 0.00
196 205 0.59
197 4 0.01
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.21
Consensus pattern (193 bp):
AGGCAGAATGCGCAAGAAGCGGATCGGCCCGGTCCCCCCTGCGTGCTTCGATCCTGCACTGGTCC
TGCTGTCACAACTCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATG
GAATGAACTCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAG
Found at i:33648716 original size:158 final size:159
Alignment explanation
Indices: 33648308--33648716 Score: 340
Period size: 159 Copynumber: 2.6 Consensus size: 159
33648298 GCCCAGTTGG
* ** * * * * * * * **
33648308 GGATCGGCCCGGTCC-CCCCTGCGTGCTATCGATCTTGCTATCGCAAGCCTCAGTCTGATCCTTA
1 GGATCGGCCCGATCCGCCCCTGCGTGCTGCCGATCCTACTACCACAACCCTCGGTCCGAT-CAGA
* * * ** *
33648372 TCTTAGACTGGGAATGAACTCTGTATGCACAAGTCAATCCACGAAACGAGCGTGTAGGCGCTAAG
65 TCTTAGACTAGGAATGAACTCTGTATGCACAAGCCAACCCACGAAACGAGCGTACAGGCGCTAAA
** * *
33648437 CCGACCGAAGTGGCATAATGTGAAAGCCGA
130 CCGACCGAAAAGGCAGAATGCGAAAGCCGA
* * * * * * ** **
33648467 GGATCGGCCCGATCCGCCTCTGCGTGTTGCCGGTCTTGCTACCACAACCCTCGGTCCGGTTGGGG
1 GGATCGGCCCGATCCGCCCCTGCGTGCTGCCGATCCTACTACCACAACCCTCGGTCCGATCAGAT
** * * *
33648532 CTTAGAC-ATGGAATGAACTCCCTATGC-CTAAGCCAACCCATGAAACGGGCGTACGGGCGCTAA
66 CTTAGACTA-GGAATGAACTCTGTATGCAC-AAGCCAACCCACGAAACGAGCGTACAGGCGCTAA
* * *
33648595 ACCGATCGAAAAGGCAGAATGCGAAAGTCGG
129 ACCGACCGAAAAGGCAGAATGCGAAAGCCGA
* * * ** *
33648626 GGATTGGCCCGATCC-CCCCTGTGTGCTGGCGATCCTACTGTCACAACCCTCGGTTCGATCAGAT
1 GGATCGGCCCGATCCGCCCCTGCGTGCTGCCGATCCTACTACCACAACCCTCGGTCCGATCAGAT
*
33648690 CTTAGACTAGGAATGAACTTTGTATGC
66 CTTAGACTAGGAATGAACTCTGTATGC
33648717 TTGGACTAGG
Statistics
Matches: 192, Mismatches: 54, Indels: 9
0.75 0.21 0.04
Matches are distributed among these distances:
158 57 0.30
159 102 0.53
160 33 0.17
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.22
Consensus pattern (159 bp):
GGATCGGCCCGATCCGCCCCTGCGTGCTGCCGATCCTACTACCACAACCCTCGGTCCGATCAGAT
CTTAGACTAGGAATGAACTCTGTATGCACAAGCCAACCCACGAAACGAGCGTACAGGCGCTAAAC
CGACCGAAAAGGCAGAATGCGAAAGCCGA
Found at i:33649787 original size:159 final size:157
Alignment explanation
Indices: 33649377--33649876 Score: 433
Period size: 158 Copynumber: 3.2 Consensus size: 157
33649367 CTGATCTAAT
* * * *
33649377 CTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACAAGAGTGCGGGTGCTCAAT
1 CTTAGACTGGGAATGAACTCT-TATGCCTAAGCCAACCCATGAAACAGGCGTGCGGGCGCTCAAC
* * * * *
33649442 CGGTCGGAGAGGTAGAATGCGTAAGCCGGGGATAGG-CTCGAT-CCCCCTGTGTGCTATCGATCC
65 CGGTCAGAGAGGTAGAATGCGTAAGCCGAGGATCGGCCT-GATCCCCCCTATGTACTATCGATCC
** * * *
33649505 TGCTATCGCAACCCTCGATCCGATCCGAT
129 CACTACCACAACCCTCGATCCGATCCGAG
* * *
33649534 CTTAGACTGGGAATGAACT-TCTATGCATAAGTCAACCCATGAAAC-GAGCGTGCGGGCGCTAAA
1 CTTAGACTGGGAATGAACTCT-TATGCCTAAGCCAACCCATGAAACAG-GCGTGCGGGCGCTCAA
* * * * * * *
33649597 CCGG-CCGAAGAAGCGT--AATGTGCAAGTCGAGGTTCGGCCTGGTCCCCCTCTATGTACTACCG
64 CCGGTCAG-AG-AG-GTAGAATGCGTAAGCCGAGGATCGGCCTGATCCCCC-CTATGTACTATCG
* * * * *
33649659 ATCCCACTGCCATAACCCTCGATCCG-GCTGGGG
125 ATCCCACTACCACAACCCTCGATCCGATC-CGAG
* *
33649692 CTTAGACAT-GGAATGAACTCCTTATGCCTAAGCCGACCCATGAAACAGGCGTGCGGGCACTCAA
1 CTTAGAC-TGGGAATGAACT-CTTATGCCTAAGCCAACCCATGAAACAGGCGTGCGGGCGCTCAA
* * *
33649756 CCGGTCAGAGAGGTAGAATGCGTAAGCCGAGGATCGGCCCGATCCCCCCTACGTACCATCGATCC
64 CCGGTCAGAGAGGTAGAATGCGTAAGCCGAGGATCGGCCTGATCCCCCCTATGTACTATCGATCC
* *** * * * * * *
33649821 TACTACTGTAACTCTCGGTCTGATGCAAT
129 CACTACCACAACCCTCGATCCGATCCGAG
33649850 CTTAGACTGGGAATGAACTCTGTATGC
1 CTTAGACTGGGAATGAACTCT-TATGC
33649877 TTAGACTGGG
Statistics
Matches: 268, Mismatches: 57, Indels: 35
0.74 0.16 0.10
Matches are distributed among these distances:
155 2 0.01
156 58 0.22
157 33 0.12
158 103 0.38
159 68 0.25
160 4 0.01
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.21
Consensus pattern (157 bp):
CTTAGACTGGGAATGAACTCTTATGCCTAAGCCAACCCATGAAACAGGCGTGCGGGCGCTCAACC
GGTCAGAGAGGTAGAATGCGTAAGCCGAGGATCGGCCTGATCCCCCCTATGTACTATCGATCCCA
CTACCACAACCCTCGATCCGATCCGAG
Found at i:33649879 original size:26 final size:26
Alignment explanation
Indices: 33649850--33649902 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
33649840 CTGATGCAAT
*
33649850 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
33649876 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
33649902 C
1 C
33649903 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:33650781 original size:26 final size:26
Alignment explanation
Indices: 33650731--33650783 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
33650721 CTGGTTTGAT
* **
33650731 CTTAGACTATGAATGAACTTTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
33650757 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
33650783 C
1 C
33650784 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.32
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:33651493 original size:26 final size:26
Alignment explanation
Indices: 33651455--33651507 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33651445 GGCTCAAAAT
*
33651455 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
33651481 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
33651507 C
1 C
33651508 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:33652504 original size:26 final size:26
Alignment explanation
Indices: 33652466--33652518 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33652456 GGCTCAAAAT
*
33652466 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
33652492 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
33652518 C
1 C
33652519 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:33652853 original size:158 final size:157
Alignment explanation
Indices: 33652491--33652992 Score: 424
Period size: 158 Copynumber: 3.2 Consensus size: 157
33652481 AACTCTGTAT
* * *
33652491 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAACGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTACGGGCGCTCAG
** * * * * *
33652556 CAGGCCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGGTCCCCTCTGTGTGCTGTCAATCC
66 CAGGCCAAAGAGGCAGAATACGCAAGCCGGGGATCGACCCAGTCCCCTCTGCGTGCTGCCAATCC
** * *
33652621 TGCTGCCACAACCCTCGGTCTGGTCTAA
131 -GCTGCCACAACCCTCCATCTCGACTAA
* * * * * ** * *
33652649 TCTTAGA-TTGGGAATGAACTCTGTATGCATAAGTCAACCCGTGAAACGAGCGTACGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTACGGGCGCTCA
* * * **
33652713 GCTGGCCAAAGAGGCATAATACGCAAGCCGGGGATC-AGCCCAGTCCCCCTCTGCGTGTTGCCGG
65 GCAGGCCAAAGAGGCAGAATACGCAAGCCGGGGATCGA-CCCAGT-CCCCTCTGCGTGCTGCCAA
* *
33652777 TCC-CATGCGACAACCCTCCATC-CGACTGGA
128 TCCGC-TGCCACAACCCTCCATCTCGACT-AA
* *** **
33652807 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGGGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTACGGGCGCTCAG
* * ** * * * * *
33652872 CCGGTCGGAGAGGCAGAATGCACAAGCCGGGGATCG-GCCTGATCCCCCCTGCGTGCTGCCAATC
66 CAGGCCAAAGAGGCAGAATACGCAAGCCGGGGATCGACCCAG-TCCCCTCTGCGTGCTGCCAATC
* * *
33652936 CTGCTGCCCCAACCCTCGATC-CGGTCTAA
130 C-GCTGCCACAACCCTCCATCTC-GACTAA
*
33652965 TCTTAGAC-TGGTAATGAACTCCGTATGC
1 GCTTAGACATGG-AATGAACTCCGTATGC
33652993 TTAGACTGGG
Statistics
Matches: 269, Mismatches: 63, Indels: 24
0.76 0.18 0.07
Matches are distributed among these distances:
157 30 0.11
158 217 0.81
159 22 0.08
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTACGGGCGCTCAG
CAGGCCAAAGAGGCAGAATACGCAAGCCGGGGATCGACCCAGTCCCCTCTGCGTGCTGCCAATCC
GCTGCCACAACCCTCCATCTCGACTAA
Found at i:33652995 original size:26 final size:26
Alignment explanation
Indices: 33652966--33653018 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
33652956 CCGGTCTAAT
*
33652966 CTTAGACTGGTAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
33652992 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
33653018 C
1 C
33653019 ATAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:33653470 original size:26 final size:26
Alignment explanation
Indices: 33653441--33653493 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
33653431 CCAGTCCGAT
33653441 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
33653467 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
33653493 C
1 C
33653494 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:33653717 original size:172 final size:168
Alignment explanation
Indices: 33653466--33653925 Score: 546
Period size: 159 Copynumber: 2.8 Consensus size: 168
33653456 AACTCCATAT
* * * * *
33653466 GCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCA
* *
33653530 GTCGATCAGAGAGGCATAATGCGGTAAGTCGGGGATCGGCCCGATCCCCCTATGCGTGCTGCCGA
65 GTCGATCGGAGAGGCATAATGC-GCAAGTCGGGGATCGGCCCGATCCCCCTAT-CGTGCTG-CGA
* *
33653595 TCCCGTTACCAGTCCTGCTACCACAACCCTCGGTCCGGTTGGG
127 T-CCGCTACCAGTCCCGCTACCACAACCCTCGGTCCGGTTGGG
** ** *
33653638 GCTTAGACATGGAATGAACTATGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCATTGAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
* *
33653703 TCGATCGGAGAGGCATAATGCGCAAGCCGGGGATCGGCTCGATCCCCC--TC-TG-T--G-T--G
66 TCGATCGGAGAGGCATAATGCGCAAGTCGGGGATCGGCCCGATCCCCCTATCGTGCTGCGATCCG
* *
33653759 CTACCGGTCCCGTTACCACAACCCTCGGTCCGGTTGGG
131 CTACCAGTCCCGCTACCACAACCCTCGGTCCGGTTGGG
* * * *
33653797 GCTTAGACATGGAATGGACTCCCTATGCCTAAGCCAACCCATGAAATGGGCATGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
* * * * *
33653862 CCAACCGGAGATGCAGAATGCGCAAGTCGGGGATCGGCCCGATCCCCCTAT-GTGCTGTCGATCC
66 TCGATCGGAGAGGCATAATGCGCAAGTCGGGGATCGGCCCGATCCCCCTATCGTGCTG-CGATCC
33653926 TGCTGCCGCA
Statistics
Matches: 243, Mismatches: 34, Indels: 26
0.80 0.11 0.09
Matches are distributed among these distances:
159 132 0.54
161 3 0.01
162 2 0.01
163 1 0.00
165 1 0.00
166 2 0.01
167 2 0.01
168 1 0.00
169 1 0.00
171 24 0.10
172 73 0.30
173 1 0.00
ACGTcount: A:0.22, C:0.30, G:0.29, T:0.19
Consensus pattern (168 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
TCGATCGGAGAGGCATAATGCGCAAGTCGGGGATCGGCCCGATCCCCCTATCGTGCTGCGATCCG
CTACCAGTCCCGCTACCACAACCCTCGGTCCGGTTGGG
Found at i:33653826 original size:488 final size:484
Alignment explanation
Indices: 33652884--33654059 Score: 1273
Period size: 488 Copynumber: 2.4 Consensus size: 484
33652874 GGTCGGAGAG
* * * * * *
33652884 GCAGAATGCACAAGCCGGGGATCGGCCTGATCCCCCCTGCGTGCTGCCAATCCTGCTGCCCCAAC
1 GCAGAATGCGCAAGTCGGGGATCGGCCAGAT-CCCCCTGCGTGCTGTCGATCCTGCTGCCGCAAC
* * *
33652949 CCTCGATCCGGTCTAATCTTAGACTGGTAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCG
65 CCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCG
* * ** * * *
33653014 TATGCATAAGTCAACCCACGAAACAAAAGTGCGGGCGCTCA-ACCAGCCGGAGCGGCATAATGCG
130 TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGACGA-CCAGAGAGGCATAATGCG
*
33653078 TAAACCGGGGATCAGCCCGATCCCCCTCTGCGTGCTGTCGATCCTGCTACCACAACCCTCGGTCC
194 TAAACCGGGGATCAGCCCGATCCCCCTATGCGTGCTGTCGATCCTGCTACCACAACCCTCGGTCC
* *
33653143 GACTGGGGCTTAGACATGGAATGAACTTCGTATGCCTAGGCCAACCCATGAAACGAGTGTGCGGG
259 GACTGGGGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGG
* *
33653208 CACTCAGCCGACCGGAGAGGTAGAATGCGCAAGCCAGGGATCGGCTCGGTCCTCCCATGCGTGCT
324 CACTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCTCGATCCTCCCATGCGTGCT
** * * * * * *
33653273 GTCGATCCTGCTGCCGCAACCCTTGGTTCGATCGGATCTTAGACTGGGAATGAACTCCATATGCC
389 ACCGATCCCGCTACCACAACCCTCGGTCCGATCGGAGCTTAGACTGGGAATGAACTCCATATGCC
* *
33653338 TAAGTCAACACGTG-AA-A-CG-AG-C-G-T
454 TAAGCCAACACATGAAAGAGCGCAGCCGGAT
* ** * * * *
33653362 GC-G-A-GCGCTAAGTCGGTGATCGGTTAGGTCCCCTTGCGTGCTGTCGATCCTGCTACTGCAAC
1 GCAGAATGCGC-AAGTCGGGGATCGGCCAGATCCCCCTGCGTGCTGTCGATCCTGCTGCCGCAAC
* * *
33653424 CCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCG
65 CCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCG
* * *
33653489 TATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGTCGATCAGAGAGGCATAATGCGG
130 TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGACGACCAGAGAGGCATAATGC-G
** *
33653554 TAAGTCGGGGATCGGCCCGATCCCCCTATGCGTGCTGCCGATCCCGTTACCAGTCCTGCTACCAC
194 TAAACCGGGGATCAGCCCGATCCCCCTATGCGTGCT---G-T--CG-----A-TCCTGCTACCAC
**
33653619 AACCCTCGGTCCGGTTGGGGCTTAGACATGGAATGAACTAT-GTATGCCTAAGCCAACCCATGAA
247 AACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACT-TCGTATGCCTAAGCCAACCCATGAA
* * * * * * *
33653683 ATGAGCGTGCGGGCATTGAGTCGATCGGAGAGGCATAATGCGCAAGCCGGGGATCGGCTCGATCC
311 ACGAGCGTGCGGGCACTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCTCGATCC
* * * * * * *
33653748 -CCCTCTGTGTGCTACCGGTCCCGTTACCACAACCCTCGGTCCGGTTGGGGCTTAGACAT-GGAA
376 TCCC-ATGCGTGCTACCGATCCCGCTACCACAACCCTCGGTCCGATCGGAGCTTAGAC-TGGGAA
* * *
33653811 TGGACTCCCTATGCCTAAGCCAACCCATGAAATGGGCATGCGGGCGCTCAGCCAACCGGAGAT
439 TGAACTCCATATGCCTAAGCCAACACATGAAA---G-A-----GCG--CAG----CC-G-GAT
* ** *
33653874 GCAGAATGCGCAAGTCGGGGATCGGCCCGATCCCCCTATGTGCTGTCGATCCTGCTGCCGCAACA
1 GCAGAATGCGCAAGTCGGGGATCGGCCAGATCCCCCTGCGTGCTGTCGATCCTGCTGCCGCAACC
*
33653939 CTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGT
66 CTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGT
* *
33654004 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAAAGGCA
131 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGACGACCAGAGAGGCA
33654060 GGATGCGCAA
Statistics
Matches: 568, Mismatches: 85, Indels: 54
0.80 0.12 0.08
Matches are distributed among these distances:
475 139 0.24
476 50 0.09
477 1 0.00
478 2 0.00
479 1 0.00
480 1 0.00
482 2 0.00
487 4 0.01
488 192 0.34
489 4 0.01
494 1 0.00
500 2 0.00
503 2 0.00
508 1 0.00
511 1 0.00
512 3 0.01
513 1 0.00
514 157 0.28
515 4 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.20
Consensus pattern (484 bp):
GCAGAATGCGCAAGTCGGGGATCGGCCAGATCCCCCTGCGTGCTGTCGATCCTGCTGCCGCAACC
CTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGT
ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGACGACCAGAGAGGCATAATGCGTA
AACCGGGGATCAGCCCGATCCCCCTATGCGTGCTGTCGATCCTGCTACCACAACCCTCGGTCCGA
CTGGGGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCA
CTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCTCGATCCTCCCATGCGTGCTAC
CGATCCCGCTACCACAACCCTCGGTCCGATCGGAGCTTAGACTGGGAATGAACTCCATATGCCTA
AGCCAACACATGAAAGAGCGCAGCCGGAT
Found at i:33653991 original size:26 final size:26
Alignment explanation
Indices: 33653955--33654007 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
33653945 CCGGTCCAAT
*
33653955 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
33653981 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
33654007 C
1 C
33654008 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:33655052 original size:26 final size:26
Alignment explanation
Indices: 33655009--33655059 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
33654999 CCGGTCCGAT
* *
33655009 CTTAGACTAGGAGGGAACTCTGTATC
1 CTTAGACTAGGAAGGAACTCCGTATC
* *
33655035 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACTAGGAAGGAACTCCGTAT
33655060 GCCTAAGTCA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTAGGAAGGAACTCCGTATC
Found at i:33655168 original size:185 final size:185
Alignment explanation
Indices: 33654850--33655185 Score: 449
Period size: 185 Copynumber: 1.8 Consensus size: 185
33654840 CCGATCCGAT
* * *
33654850 CTTAGACTGAGAATGAACTTCGTATGCATAAGTCAACCCATGAAATGAGCGTTCGGGCACTGAGC
1 CTTAGACTGAGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTTCGGGCACTGAGC
* * * * ****
33654915 TGGCCGAAGAGGCATAATGCGCAAGCCGGAGTTCGGCCCGGTCCCCCTCTACGTGCTGTTGGTCC
66 CGACCGAAGAGGCATAATGCGCAAGCCGGAGATCGGCCCGGTCCCCCTCTACATGCTGCCAATCC
* * *
33654980 CGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTAGGAGGGAACTCTGTATC
131 CGCTGCCACAACCCTCAGTCCGGTCCGATCTTAGACTAGGAGGGAACTCTGTATC
* * **
33655035 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGT-GGGTGCTGAG
1 CTTAGACTGAGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGT-TCGGGCACTGAG
* * * * *
33655099 CCGACCGGAGAGGCATAATGCGTAAGTCGGGGATCGGCCCGGTCCCCCTCTGCATGCTGCCAATC
65 CCGACCGAAGAGGCATAATGCGCAAGCCGGAGATCGGCCCGGTCCCCCTCTACATGCTGCCAATC
33655164 CCGCTGCCACAACCCTCAGTCC
130 CCGCTGCCACAACCCTCAGTCC
33655186 AGCTGGGGGT
Statistics
Matches: 127, Mismatches: 23, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
185 126 0.99
186 1 0.01
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (185 bp):
CTTAGACTGAGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTTCGGGCACTGAGC
CGACCGAAGAGGCATAATGCGCAAGCCGGAGATCGGCCCGGTCCCCCTCTACATGCTGCCAATCC
CGCTGCCACAACCCTCAGTCCGGTCCGATCTTAGACTAGGAGGGAACTCTGTATC
Found at i:33655475 original size:343 final size:343
Alignment explanation
Indices: 33654700--33655480 Score: 874
Period size: 344 Copynumber: 2.3 Consensus size: 343
33654690 GCTTAAACAT
* * * * *
33654700 GGAATGAACTCTGTATGCCTATGCCAACCCACGAAACAAACGTGCGGGTGCTCAGCCGACCGGAG
1 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGACCGGAG
* * * **
33654765 AGGCAGAATGCACAAGCCGGGGATCGAACCAGTCACCCCCTGCATGCTGTAGATCCTGCTACTGC
66 AGGCAGAATGCGCAAGCCGGGGATCGAACCAGTCACCCCCTGCATGCTGCAGATCCCGCTACCAC
* * * * *
33654830 AACCCTCAGTCCGATCCGATCTTAGACTGAGAATGAACTTCGTATGCATAAGTCAACCCATGAAA
131 AACCCTCAGTCCGATCCGAGCTTAGACTGAGAATGAACTCCCTAAGCATAAGCCAACCCATGAAA
* * * * * * * *
33654895 TGAGCGTTCGGGCACTGAGCTGGCCGAAGAGGCATAATGCGCAAGCCGGAGTTCGGCCCGGTCCC
196 CGAGCGTGCGGGCACTCAGCCGGCCGAAGAGGCAGAATACGCAAGCCGGAGATCGGCCCAGTCCC
* * * * * * * *
33654960 CCTCTACGTGCTGTTGGTCCCGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTAGGAGGGA
261 CCTCTAC-AGCTGTCGATCCCGCTGCCGCAACCCTCGATCCGATCCGATCTTAGACTAGGAAGAA
33655025 ACTCTGTATCCTTAGACTG
325 ACTCTGTATCCTTAGACTG
* *
33655044 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGTGCTGAGCCGACCGGAG
1 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGACCGGAG
* * * ** * *
33655109 AGGCATAATGCGTAAGTCGGGGATCGGCCCGGTC-CCCCTCTGCATGCTGCCA-ATCCCGCTGCC
66 AGGCAGAATGCGCAAGCCGGGGATCGAACCAGTCACCCC-CTGCATGCTG-CAGATCCCGCTACC
* * * * *
33655172 ACAACCCTCAGTCC-AGCTGGGGGTTAGACATG-GAATGAACTCCCTAAGCCTAAGCCAACCCAT
129 ACAACCCTCAGTCCGATC-CGAGCTTAGAC-TGAGAATGAACTCCCTAAGCATAAGCCAACCCAT
* ** * *
33655235 GAAACGGGCGTGCGGGTGCTCAGCCGGCCGAAGAGGCAGAATACGCAAAGTCGGGGATCGGCCCA
192 GAAACGAGCGTGCGGGCACTCAGCCGGCCGAAGAGGCAGAATACGC-AAGCCGGAGATCGGCCCA
* * **
33655300 GTCCCCCTGTA-AGCTGTCGATCCTGCTGCCGCAATGCTCGATCCGATCCGATCTTAGACT-GGA
256 GTCCCCCTCTACAGCTGTCGATCCCGCTGCCGCAACCCTCGATCCGATCCGATCTTAGACTAGG-
* * *
33655363 AATAAACTTTGTATGCTTAGACTG
320 AAGAAACTCTGTATCCTTAGACTG
* * ** *
33655387 GGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGACGCTCAGTCGACCAGG-
1 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGACC-GGA
*
33655451 GAGGCAGGATGCGCAAGCCGGGGATCGAAC
65 GAGGCAGAATGCGCAAGCCGGGGATCGAAC
33655481 GGGTGGTAGG
Statistics
Matches: 360, Mismatches: 70, Indels: 15
0.81 0.16 0.03
Matches are distributed among these distances:
342 2 0.01
343 143 0.40
344 188 0.52
345 27 0.08
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.19
Consensus pattern (343 bp):
GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGACCGGAG
AGGCAGAATGCGCAAGCCGGGGATCGAACCAGTCACCCCCTGCATGCTGCAGATCCCGCTACCAC
AACCCTCAGTCCGATCCGAGCTTAGACTGAGAATGAACTCCCTAAGCATAAGCCAACCCATGAAA
CGAGCGTGCGGGCACTCAGCCGGCCGAAGAGGCAGAATACGCAAGCCGGAGATCGGCCCAGTCCC
CCTCTACAGCTGTCGATCCCGCTGCCGCAACCCTCGATCCGATCCGATCTTAGACTAGGAAGAAA
CTCTGTATCCTTAGACTG
Found at i:33656001 original size:11 final size:11
Alignment explanation
Indices: 33655985--33656014 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
33655975 GTTAGGCCCT
33655985 CGACGATGCTC
1 CGACGATGCTC
33655996 CGACGATGCTC
1 CGACGATGCTC
*
33656007 CGATGATG
1 CGACGATG
33656015 GTGCCTTGGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.20, C:0.30, G:0.30, T:0.20
Consensus pattern (11 bp):
CGACGATGCTC
Found at i:33656134 original size:26 final size:26
Alignment explanation
Indices: 33656084--33656136 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
33656074 GGCTCAAAAT
** **
33656084 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACACGGAATGAACTCCGTATG
33656110 CTTAGACACGGAATGAACTCCGTATG
1 CTTAGACACGGAATGAACTCCGTATG
33656136 C
1 C
33656137 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACACGGAATGAACTCCGTATG
Found at i:33656412 original size:159 final size:159
Alignment explanation
Indices: 33656110--33656612 Score: 349
Period size: 159 Copynumber: 3.2 Consensus size: 159
33656100 ACTTTGTATG
** * ** *
33656110 CTTAGACACGGAATGAACTCCGTATGC-CTAAGCCAACCCATGAAACGAATGTGA-AGGCGCTCA
1 CTTAGACTGGGAATGAACTCCGTATGCACTAAGCCAACCCACGAAACGAGCGT-ACGGGCGCTCA
* * * ** * ** * * ** *
33656173 GCCAG-CCGGAGAGGTAGAATGCATAAGTCAGGGATTGACCTTG-TCCAACCCTATGTGCTATCG
65 G-TAGACCGAAGAGGCAGAATGCGCAAGCCAGGGATCAACC-CGATCC-CCCCTGCGTGCTACCG
** **
33656236 ATCCTTCTACCGTAACCCTCGGTCCGGTCTGAT
127 ATCCCACTACCACAACCCTCGGTCCGGTCTGAT
* * * * * *
33656269 CTTAGACTGGGAATGAACTCCGTATGCA-TAAGTCAACCCACGAAATGAGCTTGCGGGTGCTGAG
1 CTTAGACTGGGAATGAACTCCGTATGCACTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
* * * * * * *
33656333 CTAG-CCGAAGAGGCATAATGCGTAAGCCAGGGATCAACCCGGTCCCCCTCTGCGTGTTGCTGGT
66 -TAGACCGAAGAGGCAGAATGCGCAAGCCAGGGATCAACCCGATCCCCC-CTGCGTGCTACCGAT
* * * * **
33656397 CCCGCTGCCACAACCCTCAGTCCAG-CTGGGG
129 CCCACTACCACAACCCTCGGTCCGGTCT-GAT
* * * * *
33656428 ATTAGACAT-GGAATGAAGTCCCTATG-ACTAAGCCAACCCATGAAACGGGCGTACGGGCGCTCA
1 CTTAGAC-TGGGAATGAACTCCGTATGCACTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCA
* * * ** *
33656491 GTCGACCGGAGAGGCAGAATGCGCAAGCTAGGGATCGGCTCGATCCCCCCTGCGTGCTACCGATC
65 GTAGACCGAAGAGGCAGAATGCGCAAGCCAGGGATCAACCCGATCCCCCCTGCGTGCTACCGATC
* * * * *
33656556 CTACTATCGCAACCCTTGGTCCGATCTGAT
130 CCACTACCACAACCCTCGGTCCGGTCTGAT
33656586 CTTAGACTGGGAATGAACTCCGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
33656613 TTAGACTGGG
Statistics
Matches: 257, Mismatches: 76, Indels: 22
0.72 0.21 0.06
Matches are distributed among these distances:
157 1 0.00
158 57 0.22
159 198 0.77
160 1 0.00
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (159 bp):
CTTAGACTGGGAATGAACTCCGTATGCACTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
TAGACCGAAGAGGCAGAATGCGCAAGCCAGGGATCAACCCGATCCCCCCTGCGTGCTACCGATCC
CACTACCACAACCCTCGGTCCGGTCTGAT
Found at i:33656615 original size:26 final size:26
Alignment explanation
Indices: 33656586--33656638 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
33656576 CCGATCTGAT
33656586 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
33656612 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
33656638 C
1 C
33656639 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:33656958 original size:170 final size:170
Alignment explanation
Indices: 33656611--33656978 Score: 409
Period size: 170 Copynumber: 2.2 Consensus size: 170
33656601 AACTCCGTAT
* * *** *
33656611 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCGTGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACAAGCGTGCGGGCGCTCAG
* * * * ** *
33656676 CCGGTCGGAGAGGCATAATGCGCAAGCCAGGGATCAGCCCGATCCCCTTTTGCATGCTGCCGATC
66 CCGGCCAGAAAGGCAAAATGCGCAAGCCAGGGATCAGCCCGATCCCCTCCTGCATGCGGCCGATC
* * * *
33656741 CTGCTGCTGGTCCTGCTGCCACAACCCTTGGTCCGGCTGG
131 CTACTGCTGGTCCTGCTACCACAACCCTCGGTCCGGCTGA
33656781 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACAAGCGTGCGGGCGCTCA
1 GCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACAAGCGTGCGGGCGCTCA
* * * * * *
33656845 GTCGGCCAGAAAGGTAAAATGTGCAAGCC-GAGGATCGGCCCGGTCCCC-CCTGCATGCGGTCGA
65 GCCGGCCAGAAAGGCAAAATGCGCAAGCCAG-GGATCAGCCCGATCCCCTCCTGCATGCGGCCGA
* * * * ** *
33656908 TTCTATTGTTGGTCTTGCTACCGTAACCCTCGGTCCAGTCTGA
129 TCCTACTGCTGGTCCTGCTACCACAACCCTCGGTCC-GGCTGA
*
33656951 TCTTAGACTGGGAATGAACTCCGTATGC
1 GCTTAGACTGGGAATGAACTCCGTATGC
33656979 TTAGACATGG
Statistics
Matches: 163, Mismatches: 31, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
169 40 0.25
170 122 0.75
171 1 0.01
ACGTcount: A:0.21, C:0.30, G:0.28, T:0.21
Consensus pattern (170 bp):
GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACAAGCGTGCGGGCGCTCAG
CCGGCCAGAAAGGCAAAATGCGCAAGCCAGGGATCAGCCCGATCCCCTCCTGCATGCGGCCGATC
CTACTGCTGGTCCTGCTACCACAACCCTCGGTCCGGCTGA
Found at i:33656990 original size:26 final size:26
Alignment explanation
Indices: 33656952--33657004 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
33656942 CCAGTCTGAT
33656952 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
33656978 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
33657004 C
1 C
33657005 CTAAGGCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:33657270 original size:158 final size:156
Alignment explanation
Indices: 33656978--33657478 Score: 501
Period size: 158 Copynumber: 3.2 Consensus size: 156
33656968 ACTCCGTATG
* * *
33656978 CTTAGACATGGAATGAACTCCGTATGCCTAAGGCAACCCATGAAACGAGCGTG-AGGGCGCTCAA
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGGCAACCCACGAAATGAGCGTGCA-GGCGCTCAG
* * *
33657042 CCGACCGGAGAGGCAGAATGTGCAAGCCGGGGATCGACCCGATCCCTCCTGCGTGCTGTCGATCC
65 CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCG-TCCCCCCTGCGTGCTGTCGATCC
* *
33657107 TGCTGCCGCAACCCTTGGTCTGATCCGAT
129 TGCTGCCGCAACCCTCGGTC-GATACGAT
* * *
33657136 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGGCAACCCACAAAATGAGCGTGCAGGCACTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGGCAACCCACGAAATGAGCGTGCAGGCGCTCAG
* * ** * * **
33657200 CCAACC-GAGAGGCATAATGCGCAAGTTGCGGATCGGCCCAGTCCCCCTCTGCGTGCTATCGGCC
65 CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCC-GTCCCCC-CTGCGTGCTGTCGATC
* * * * *
33657264 CCGCTGCCACAACCCTCGGTCCAGCTAGGGT
128 CTGCTGCCGCAACCCTCGGT-C-GATACGAT
* * * * *
33657295 -TTAGACATGCAATGAACTCTC-TATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGTGCTCAG
1 CTTAGACATGGAATGAACTC-CGTATGCCTAAGGCAACCCACGAAATGAGCGTGCAGGCGCTCAG
* * * *
33657358 TCGACCGGAGAGGCAGAATACGCAAGCCGGGGATCGGTCCGGTCCCCCCTGTGTGCTGTCGATCC
65 CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGG-CCCGTCCCCCCTGCGTGCTGTCGATCC
* * * * *
33657423 TACTGTCGCAACCCTCGATCCAGTTCGAT
129 TGCTGCCGCAACCCTCGGTCGA-TACGAT
*
33657452 CTTAGAC-TGGGAATGAACTCTGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
33657479 TTAGACTGGG
Statistics
Matches: 273, Mismatches: 57, Indels: 26
0.77 0.16 0.07
Matches are distributed among these distances:
157 38 0.14
158 193 0.71
159 40 0.15
160 2 0.01
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.19
Consensus pattern (156 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGGCAACCCACGAAATGAGCGTGCAGGCGCTCAGC
CGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGTCCCCCCTGCGTGCTGTCGATCCTG
CTGCCGCAACCCTCGGTCGATACGAT
Found at i:33657488 original size:26 final size:26
Alignment explanation
Indices: 33657452--33657504 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
33657442 CCAGTTCGAT
*
33657452 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
33657478 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
33657504 C
1 C
33657505 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:33657619 original size:26 final size:26
Alignment explanation
Indices: 33657590--33657642 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
33657580 CCGGTCTGAT
33657590 CTTAGAAATGGAATGAACTCCGTATG
1 CTTAGAAATGGAATGAACTCCGTATG
*
33657616 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGAAATGGAATGAACTCCGTATG
33657642 C
1 C
33657643 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGAAATGGAATGAACTCCGTATG
Found at i:33657974 original size:159 final size:156
Alignment explanation
Indices: 33657615--33658077 Score: 538
Period size: 159 Copynumber: 2.9 Consensus size: 156
33657605 AACTCCGTAT
* *
33657615 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * ** * *
33657680 CCGACCGTAGAGGCATAATGAGCAAG-CTAGGGATTGGCTCAATCCCCCCTATGTGCTATCGATC
66 CCGACCGGAGAGGCATAATGCGCAAGTC-GGGGATTGGCTCGGTCCCCCCTGTGTGCTGTCGATC
*
33657744 CTGTTGCCGCAACCCTCAGTCCGATCCTA
130 CTGCTGCCGCAACCCTCAGTCCGA--CTA
* * * * * * *
33657773 TCTTAGAC-TGCGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTACAGGCGTTGA
1 GCTTAGACATG-GAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
*
33657837 GCCGACCGGAGAGGCATAATGCGCAAGTCGGGGATTGGCTCGGTCCCCCTCTGTGTGCTGTCGGT
65 GCCGACCGGAGAGGCATAATGCGCAAGTCGGGGATTGGCTCGGTCCCCC-CTGTGTGCTGTCGAT
*
33657902 CCTGCTGCCACAACCCTCAGTCCCG-CTA
129 CCTGCTGCCGCAACCCTCAGT-CCGACTA
* * *
33657930 GGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAACCATGAAACGAGCGTGCGGGTGCTC
1 --GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTC
* * ** ** * *
33657995 AGCCGATCGGAGAGGCAGAATGCGCTGGTCGGGGACCGGAC-CGGTCCCCCCTGCGTGTTGTCGA
64 AGCCGACCGGAGAGGCATAATGCGCAAGTCGGGGATTGG-CTCGGTCCCCCCTGTGTGCTGTCGA
*
33658059 TCCTGCTACCGCAACCCTC
128 TCCTGCTGCCGCAACCCTC
33658078 GTTCCGATCC
Statistics
Matches: 257, Mismatches: 40, Indels: 16
0.82 0.13 0.05
Matches are distributed among these distances:
157 5 0.02
158 122 0.47
159 124 0.48
160 6 0.02
ACGTcount: A:0.22, C:0.31, G:0.27, T:0.20
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
CCGACCGGAGAGGCATAATGCGCAAGTCGGGGATTGGCTCGGTCCCCCCTGTGTGCTGTCGATCC
TGCTGCCGCAACCCTCAGTCCGACTA
Found at i:33658142 original size:26 final size:27
Alignment explanation
Indices: 33658094--33658148 Score: 76
Period size: 26 Copynumber: 2.1 Consensus size: 27
33658084 ATCCGATCTT
33658094 AGACTGGGAATGAACTACATATG-CTA
1 AGACTGGGAATGAACTACATATGCCTA
* * *
33658120 AGACTGGGGATGAACTCCGTATGCCTA
1 AGACTGGGAATGAACTACATATGCCTA
33658147 AG
1 AG
33658149 TCAACCCACG
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.33, C:0.18, G:0.27, T:0.22
Consensus pattern (27 bp):
AGACTGGGAATGAACTACATATGCCTA
Found at i:33658164 original size:639 final size:638
Alignment explanation
Indices: 33656932--33658179 Score: 1773
Period size: 639 Copynumber: 2.0 Consensus size: 638
33656922 TTGCTACCGT
*
33656932 AACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACT
1 AACCCTCGGTCCAGTCTGATCTTAGAATGGGAATGAACTCCGTATGCTTAGACATGGAATGAACT
* * *
33656997 CCGTATGCCTAAGGCAACCCATGAAACGAGCGTGAGGGCGCTCAACCGACCGGAGAGGCAGAATG
66 CCGTATGCCTAAGCCAACCCACGAAACGAGCATGAGGGCGCTCAACCGACCGGAGAGGCAGAATG
* * * * * * **
33657062 TGCAAGCCGGGGATCGACCCGATCCCTCCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTTGGTC
131 AGCAAGCCAGGGATCGACCCAATCCCCCCTACGTGCTATCGATCCTGCTGCCGCAACCCTCAGTC
* * * *
33657127 TGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGGCAACCCACAAAATGAGCGTGCAG
196 CGATCCGATCTTAGACTGCGAATGAACTCCGTATGCCTAAGGCAACCCACAAAACGAGCGTACAG
*
33657192 GCACTGAGCCAACCGAGAGGCATAATGCGCAAGTTGCGGATCGGCCCAGTCCCCCTCTGCGTGCT
261 GCACTGAGCCAACCGAGAGGCATAATGCGCAAGTCGCGGATCGGCCCAGTCCCCCTCTGCGTGCT
* * *
33657257 ATCGGCCCCGCTGCCACAACCCTCGGTCCAGCTAGGGTTTAGACATGCAATGAACTCTCTATGCC
326 ATCGGCCCCGCTGCCACAACCCTCAGTCCAGCTAGGGCTTAGACATGCAATGAACTCCCTATGCC
* * * *
33657322 TAAGCCAACCCACGAAATGGGCGTGCGGGTGCTCAGTCGACCGGAGAGGCAGAATACGCAAGCCG
391 TAAGCCAAACCACGAAACGAGCGTGCGGGTGCTCAGCCGACCGGAGAGGCAGAATACGCAAGCCG
* * * ** *
33657387 GGGATCGGTCCGGTCCCCCCTGTGTGCTGTCGATCCTACTGTCGCAACCCTCGATCCAGTTCGAT
456 GGGACCGGACCGGTCCCCCCTGCGTGCTGTCGATCCTACTACCGCAACCCTCGATCCAGTCCGAT
* *
33657452 CTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCA
521 CTTAGACTGGGAATGAACTCTATATGCTAAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCA
* *
33657517 ATGAAACGAGCGTGCGGGCGCTCAGCTGGGGATTAGCCCGATCCTGCTGCCAC
586 ACGAAACGAGCGTGCGGGCACTCAGCTGGGGATTAGCCCGATCCTGCTGCCAC
* *
33657570 AACCCTTGGTCCGGTCTGATCTTAGAAAT-GGAATGAACTCCGTATGCTTAGACATGGAATGAAC
1 AACCCTCGGTCCAGTCTGATCTTAG-AATGGGAATGAACTCCGTATGCTTAGACATGGAATGAAC
* * * *
33657634 TCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGCCGACCGTAGAGGCATAAT
65 TCCGTATGCCTAAGCCAACCCACGAAACGAGCATGAGGGCGCTCAACCGACCGGAGAGGCAGAAT
* * * * * *
33657699 GAGCAAGCTAGGGATTGGCTCAATCCCCCCTATGTGCTATCGATCCTGTTGCCGCAACCCTCAGT
130 GAGCAAGCCAGGGATCGACCCAATCCCCCCTACGTGCTATCGATCCTGCTGCCGCAACCCTCAGT
* * * **
33657764 CCGATCCTATCTTAGACTGCGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTACA
195 CCGATCCGATCTTAGACTGCGAATGAACTCCGTATGCCTAAGGCAACCCACAAAACGAGCGTACA
** * * * * * *
33657829 GGCGTTGAGCCGACCGGAGAGGCATAATGCGCAAGTCGGGGATTGGCTCGGTCCCCCTCTGTGTG
260 GGCACTGAGCCAACC-GAGAGGCATAATGCGCAAGTCGCGGATCGGCCCAGTCCCCCTCTGCGTG
* * * * *
33657894 CTGTCGGTCCTGCTGCCACAACCCTCAGTCCCGCTAGGGCTTAGACATGGAATGAACTCCCTATG
324 CTATCGGCCCCGCTGCCACAACCCTCAGTCCAGCTAGGGCTTAGACATGCAATGAACTCCCTATG
* * * ** *
33657959 CCTAAGCCAAACCATGAAACGAGCGTGCGGGTGCTCAGCCGATCGGAGAGGCAGAATGCGCTGGT
389 CCTAAGCCAAACCACGAAACGAGCGTGCGGGTGCTCAGCCGACCGGAGAGGCAGAATACGCAAGC
* * *
33658024 CGGGGACCGGACCGGTCCCCCCTGCGTGTTGTCGATCCTGCTACCGCAACCCTCGTTCC-GATCC
454 CGGGGACCGGACCGGTCCCCCCTGCGTGCTGTCGATCCTACTACCGCAACCCTCGATCCAG-TCC
33658088 GATCTTAGACTGGGAATGAACTAC-ATATGCTAAGACTGGGGATGAACTCCGTATGCCTAAGTCA
518 GATCTTAGACTGGGAATGAACT-CTATATGCTAAGACTGGGGATGAACTCCGTATGCCTAAGTCA
*
33658152 ACCCACGAAACGAGCGTGCGGGCACTCA
582 ACCAACGAAACGAGCGTGCGGGCACTCA
33658180 ACCGACTAGA
Statistics
Matches: 532, Mismatches: 74, Indels: 7
0.87 0.12 0.01
Matches are distributed among these distances:
638 236 0.44
639 295 0.55
640 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.20
Consensus pattern (638 bp):
AACCCTCGGTCCAGTCTGATCTTAGAATGGGAATGAACTCCGTATGCTTAGACATGGAATGAACT
CCGTATGCCTAAGCCAACCCACGAAACGAGCATGAGGGCGCTCAACCGACCGGAGAGGCAGAATG
AGCAAGCCAGGGATCGACCCAATCCCCCCTACGTGCTATCGATCCTGCTGCCGCAACCCTCAGTC
CGATCCGATCTTAGACTGCGAATGAACTCCGTATGCCTAAGGCAACCCACAAAACGAGCGTACAG
GCACTGAGCCAACCGAGAGGCATAATGCGCAAGTCGCGGATCGGCCCAGTCCCCCTCTGCGTGCT
ATCGGCCCCGCTGCCACAACCCTCAGTCCAGCTAGGGCTTAGACATGCAATGAACTCCCTATGCC
TAAGCCAAACCACGAAACGAGCGTGCGGGTGCTCAGCCGACCGGAGAGGCAGAATACGCAAGCCG
GGGACCGGACCGGTCCCCCCTGCGTGCTGTCGATCCTACTACCGCAACCCTCGATCCAGTCCGAT
CTTAGACTGGGAATGAACTCTATATGCTAAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCA
ACGAAACGAGCGTGCGGGCACTCAGCTGGGGATTAGCCCGATCCTGCTGCCAC
Found at i:33658858 original size:26 final size:27
Alignment explanation
Indices: 33658812--33658865 Score: 83
Period size: 26 Copynumber: 2.0 Consensus size: 27
33658802 GGCTCAAAAT
* *
33658812 CTTAGACATGGGAATGAACTCCGTATG
1 CTTAGACATGGGAATAAACTCCATATG
33658839 CTTAGACAT-GGAATAAACTCCATATG
1 CTTAGACATGGGAATAAACTCCATATG
33658865 C
1 C
33658866 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 16 0.64
27 9 0.36
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.26
Consensus pattern (27 bp):
CTTAGACATGGGAATAAACTCCATATG
Found at i:33659242 original size:159 final size:160
Alignment explanation
Indices: 33658838--33659247 Score: 387
Period size: 159 Copynumber: 2.6 Consensus size: 160
33658828 AACTCCGTAT
* *
33658838 GCTTAGACATGGAATAAACTCCATATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAG
* * * * *
33658903 TCGACCAGAGAGGCAGAATGCGCAAGCCAAGGATCGACGCGGTCCCCCCCCTGCGTGCTATCGAT
66 CCGACCGGAGAGGCAGAATGCACAAGCCAAGGATCGACGCGATCCCCCCCCTACGTGCTATCGAT
*** *** *
33658968 CCTGTTGCTGTAACCCTCAATCTGATCCAA
131 CCCACTGCCACAACCCTCAATCGGATCCAA
* * * * * * * * ** *
33658998 TCTTAGAC-TGGGAATGAACTTCGTATGCATAAGTCAACCCAAGAAATGAGCGTACGGGCGTTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCA
* * * * * ** *
33659062 GCCGACCGAAAAGGCATAATGCATAAGCCAGGGATCGACTTGAT-CCCCCTCTACGTGCTATCGA
65 GCCGACCGGAGAGGCAGAATGCACAAGCCAAGGATCGACGCGATCCCCCCCCTACGTGCTATCGA
** * ***
33659126 TCCCACTGCCACAACCCTCGGTCCGGCT-GGG
130 TCCCACTGCCACAACCCTCAAT-CGGATCCAA
* *
33659157 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACG-GATGTGCGGGCACTCA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAG-CGTGCGGGCACTCA
*
33659221 GCCGACCGGAGAGGAAGAATGCACAAG
65 GCCGACCGGAGAGGCAGAATGCACAAG
33659248 TTGGGGATCA
Statistics
Matches: 190, Mismatches: 56, Indels: 9
0.75 0.22 0.04
Matches are distributed among these distances:
158 1 0.01
159 103 0.54
160 86 0.45
ACGTcount: A:0.28, C:0.29, G:0.25, T:0.18
Consensus pattern (160 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAG
CCGACCGGAGAGGCAGAATGCACAAGCCAAGGATCGACGCGATCCCCCCCCTACGTGCTATCGAT
CCCACTGCCACAACCCTCAATCGGATCCAA
Found at i:33659357 original size:26 final size:26
Alignment explanation
Indices: 33659316--33659368 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
33659306 TTGGTTCGAT
*
33659316 CTTAGACTGTGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
33659342 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
33659368 C
1 C
33659369 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:33659774 original size:158 final size:159
Alignment explanation
Indices: 33659494--33660024 Score: 531
Period size: 158 Copynumber: 3.4 Consensus size: 159
33659484 CCGCTGTCGG
*
33659494 TCCTGCTGCCACAACCCTCGGTCCGA-CTGGGGCTTAGACATA-GAATGAACTCCGTATGCCTAA
1 TCCTGCTGCCACAACCCTCGGTCCGATCTGGAGCTTAGAC-TAGGAATGAACTCCGTATGCCTAA
* * * * * * *
33659557 GCCAACCAATGAAACGAGCGTGAGGGTGCTCAACCAACCGGAGAGGCAGAATGTGCAAGCCAGGT
65 GCCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCAGCCGGAGAGGCAAAATGCGCAAGCCAGGG
* *
33659622 ATCAGCCCGAT-CCCTCCTACGTGCTGTCGA
130 ATCAGCCCGATCCCCT-CTGCGTGCTGCCGA
* * * * *
33659652 ACCTGCTGCCGCAACCCTCGGTCCGGTCT-GATCTTAGACTAGGAATGAACTCCGTATGCATAAG
1 TCCTGCTGCCACAACCCTCGGTCCGATCTGGAGCTTAGACTAGGAATGAACTCCGTATGCCTAAG
* * * * * * *
33659716 TCAACCCATGAAATGAGCGTGCGGGGGCTCAGCCAGTCGAAGAGGCATAATGCGCAAGCCGGGGA
66 CCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCAGCCGGAGAGGCAAAATGCGCAAGCCAGGGA
*
33659781 TCAGCCCGATCCCCCTCTGCGTGCTGCCGG
131 TCAGCCCGAT-CCCCTCTGCGTGCTGCCGA
* * * *
33659811 TGCC-GCAGCCACAACCCTGGGTCCGAT-TGGGGCTTAGAC-ATGGAATGAACTCCCTATGCCTA
1 T-CCTGCTGCCACAACCCTCGGTCCGATCTGGAGCTTAGACTA-GGAATGAACTCCGTATGCCTA
* * * *** *
33659873 AGCCAACCCACGAAACGGGCGTGCGGGTGCTCGGTTGGCCGGAGAGGCAAAATGCACAAGCCAGG
64 AGCCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCAGCCGGAGAGGCAAAATGCGCAAGCCAGG
* * *
33659938 GAAC-GACCCGGTCCCCTCTGCGTGCTACCGA
129 GATCAG-CCCGATCCCCTCTGCGTGCTGCCGA
* * ** * ** * *
33659969 TCCTACTGTCGTAACCCTCGGTCTGATC-CAATCTTAGACTGGGAATGAACTCCGTA
1 TCCTGCTGCCACAACCCTCGGTCCGATCTGGAGCTTAGACTAGGAATGAACTCCGTA
33660025 CGCTTAGATT
Statistics
Matches: 300, Mismatches: 62, Indels: 22
0.78 0.16 0.06
Matches are distributed among these distances:
157 4 0.01
158 172 0.57
159 118 0.39
160 6 0.02
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.18
Consensus pattern (159 bp):
TCCTGCTGCCACAACCCTCGGTCCGATCTGGAGCTTAGACTAGGAATGAACTCCGTATGCCTAAG
CCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCAGCCGGAGAGGCAAAATGCGCAAGCCAGGGA
TCAGCCCGATCCCCTCTGCGTGCTGCCGA
Found at i:33660016 original size:317 final size:323
Alignment explanation
Indices: 33659427--33660024 Score: 753
Period size: 317 Copynumber: 1.9 Consensus size: 323
33659417 GGCCGATCAG
*
33659427 AGAGGCATAATGTGCAAGCCAGGGATCAGCCCGATCCCCCTCTGCGTGCTATTGATCCCGCTGTC
1 AGAGGCATAATGCGCAAGCCAGGGATCAGCCCGATCCCCCTCTGCGTGC--TTGA--CCGC-GTC
* *
33659492 GGTCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATAGAATGAACTCCGTATGCCTAA
61 -GTCCTGCAGCCACAACCCTCGGTCCGACTGGGGCTTAGACATAGAATGAACTCCCTATGCCTAA
* * ** *
33659557 GCCAACCAATGAAACGAGCGTGAGGGTGCTCAACCAACCGGAGAGGCAGAATGTGCAAGCCAGGT
125 GCCAACCAACGAAACGAGCGTGAGGGTGCTCAACCAACCGGAGAGGCAAAATGCACAAGCCAGGG
* ** * * **
33659622 ATCAGCCCGATCCCTCCTACGTGCTGTCGAACCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTT
190 AACAGCCCGATCCCTCCTACGTGCTACCGAACCTACTGCCGCAACCCTCGGTCCGATCCAATCTT
33659687 AGACTAGGAATGAACTCCGTATGCATAAGTCAACCCATGAAATGAGCGTGCGGGGGCTCAGCCAG
255 AGACTAGGAATGAACTCCGTATGCATAAGTCAACCCATGAAATGAGCGTGCGGGGGCTCAGCCAG
33659752 TCGA
320 TCGA
*
33659756 AGAGGCATAATGCGCAAGCCGGGGATCAGCCCGATCCCCCTCTGCGTGC-TG-CCG-GT-G-CC-
1 AGAGGCATAATGCGCAAGCCAGGGATCAGCCCGATCCCCCTCTGCGTGCTTGACCGCGTCGTCCT
* * *
33659815 GCAGCCACAACCCTGGGTCCGATTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
66 GCAGCCACAACCCTCGGTCCGACTGGGGCTTAGACATAGAATGAACTCCCTATGCCTAAGCCAAC
* * * ******
33659880 CCACGAAACGGGCGTGCGGGTGCTCGGTTGGCCGGAGAGGCAAAATGCACAAGCCAGGGAAC-GA
131 CAACGAAACGAGCGTGAGGGTGCTCAACCAACCGGAGAGGCAAAATGCACAAGCCAGGGAACAG-
* * * * * *
33659944 CCCGGTCCC-CTCTGCGTGCTACCGATCCTACTGTCGTAACCCTCGGTCTGATCCAATCTTAGAC
195 CCCGATCCCTC-CTACGTGCTACCGAACCTACTGCCGCAACCCTCGGTCCGATCCAATCTTAGAC
*
33660008 TGGGAATGAACTCCGTA
259 TAGGAATGAACTCCGTA
33660025 CGCTTAGATT
Statistics
Matches: 232, Mismatches: 35, Indels: 16
0.82 0.12 0.06
Matches are distributed among these distances:
316 2 0.01
317 173 0.75
318 2 0.01
319 1 0.00
321 2 0.01
323 3 0.01
326 2 0.01
329 47 0.20
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.19
Consensus pattern (323 bp):
AGAGGCATAATGCGCAAGCCAGGGATCAGCCCGATCCCCCTCTGCGTGCTTGACCGCGTCGTCCT
GCAGCCACAACCCTCGGTCCGACTGGGGCTTAGACATAGAATGAACTCCCTATGCCTAAGCCAAC
CAACGAAACGAGCGTGAGGGTGCTCAACCAACCGGAGAGGCAAAATGCACAAGCCAGGGAACAGC
CCGATCCCTCCTACGTGCTACCGAACCTACTGCCGCAACCCTCGGTCCGATCCAATCTTAGACTA
GGAATGAACTCCGTATGCATAAGTCAACCCATGAAATGAGCGTGCGGGGGCTCAGCCAGTCGA
Found at i:33660348 original size:343 final size:341
Alignment explanation
Indices: 33659684--33660923 Score: 1030
Period size: 343 Copynumber: 3.5 Consensus size: 341
33659674 CCGGTCTGAT
* * * * * ** *
33659684 CTTAGACTAGGAATGAACTCCGTATGCATAAGTCAACCCATGAAATGAGCGTGCGGGGGCTCAGC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAAAGAGCGTGCGGGCACTCAGT
* * * * *
33659749 CAG-TCGAAGAGGCATAATGCGCAAGCCGGGGATCAGCCCGATCCCCCTCTGCGTGCTGCCGGTG
66 CGGCT-GAAGAGGCATAATGCACAAGCCGGGGATCAGCCCGGT-CCCCTCTACGTGCTGACGGT-
* *
33659813 CCGCAGCCACAACCCTGGGTCCGATTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
128 CCGCTGCCACAACCCTCGGTCCGATTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
* * *
33659878 ACCCACGAAACGGGCGTGCGGGTGCTCGGTTGGCCGGAGAGGCAAAATGCACAAGCCAGGGAACG
193 ACCCACGAAACGGGCGTGCGGGTGCTCAGTCGACCGGAGAGGCAAAATGCACAAGCCAGGGAACG
* * * * *
33659943 ACCCGGTCCCCTCTGCGTGCTACCGATCCTACTGTCGTAACCCTCGGTCTGATCCAATCTTAGAC
258 ACCCGATCCCCTCTCCGTGCTACCGATCCTACTATCGCAACCCTCGGTCTGATCCAATCTTAGAA
*
33660008 TGGGAATGAACTCCGTACG
323 TAGGAATGAACTCCGTACG
* * * *
33660027 CTTAGATTGGGGATGAATTCCCTATGCCTAACTCAACCCACGAAAAGAGCGTGCGGGCACTCAGT
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAAAGAGCGTGCGGGCACTCAGT
* *
33660092 CGGCTGAAGAGGCATAATGCACAAGCCGGGGATCGGCCCGGTCTCCCTCTACGTGCTGTCGGTCT
66 CGGCTGAAGAGGCATAATGCACAAGCCGGGGATCAGCCCGGTC-CCCTCTACGTGCTGACGGTC-
* *
33660157 CGCTGCCACATCCCTCGATCC-AGTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
129 CGCTGCCACAACCCTCGGTCCGA-TTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
* * * * * * *
33660221 ACCCACGAAACGGGCCTGCGGGTGCTCAGTCGATCGGAGAGGTAAAATGCGCCAGCCGGGGATCG
193 ACCCACGAAACGGGCGTGCGGGTGCTCAGTCGACCGGAGAGGCAAAATGCACAAGCCAGGGAACG
* * * * *
33660286 ACCCGATCCCC-CTTCCGTGCTGCCGATCCTATTATCGCAACCCTCGAT-TCGATTCGATCTTAG
258 ACCCGATCCCCTC-TCCGTGCTACCGATCCTACTATCGCAACCCTCGGTCT-GATCCAATCTTAG
* *
33660349 AATAGGAATGAACTTCGTATG
321 AATAGGAATGAACTCCGTACG
* * *
33660370 CTTAGACTGGGGATCAACTCCGTATGCCTAAGTCAACCCACGAAACA-AGCATGTGGGCACTCAG
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAA-AGAGCGTGCGGGCACTCA-
* * * * *
33660434 CCGGTCGGAGAGGCCGGTTGGAGAGGCATAATGCATAAGCTGAGGATCAGCCCAGTCCTCCTCTA
64 ---GTC-----GG-C---TGAAGAGGCATAATGCACAAGCCGGGGATCAGCCCGGTCC-CCTCTA
* * * * *
33660499 CGTGCT-ACTGATCCCGCTGCCACAACCCTTGGTTCGATTGGGGCTTGGACAAGGAATGAACTCC
116 CGTGCTGAC-GGT-CCGCTGCCACAACCCTCGGTCCGATTGGGGCTTAGACATGGAATGAACTCC
* * * ** * ** *
33660563 GTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAACCGGCTAGAGAGGCAGAATGCA
179 CTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGTGCTCAGTCGACCGGAGAGGCAAAATGCA
* * * * * * * *
33660628 CGAGCCAGGGATCAACCTGGTCCCCTCTTGAGTGCTATCGATCTCGCTACTGGTCCTGCTATCGC
244 CAAGCCAGGGAACGACCCGATCCCCTC-----T-C---CG---T-GCTACCGATCCTACTATCGC
* * * * * * * *
33660693 AACCCTCGATCTGGTTCGATCTTAGATTGGGAATGAACTCCATATG
296 AACCCTCGGTCTGATCCAATCTTAGAATAGGAATGAACTCCGTACG
* * * * * *
33660739 CTTAGACAT-GGAATGAACTCCGTATACCTAAGCCAACCTACGAAACGAGCGTGCGGGCGCTCAG
1 CTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAAAGAGCGTGCGGGCACTCAG
* * * ** * * *
33660803 -CCGATCGAAGAGGCAGAATGCGTAAGCCAGGGATC-GACCCGATCCCC-CTCGCGTGCT-ATCG
65 TCGGCT-GAAGAGGCATAATGCACAAGCCGGGGATCAG-CCCGGTCCCCTCT-ACGTGCTGA-CG
* ** * ** *
33660864 ATCCTGCTGCTGCAACCCTCAGTCCGATCT-GATCTTAGAC-TGGGAATGAACTCCATATGC
126 GTCC-GCTGCCACAACCCTCGGTCCGAT-TGGGGCTTAGACAT-GGAATGAACTCCCTATGC
33660924 TTAGATTGGG
Statistics
Matches: 725, Mismatches: 125, Indels: 82
0.78 0.13 0.09
Matches are distributed among these distances:
342 5 0.01
343 340 0.47
344 2 0.00
347 3 0.00
352 2 0.00
353 1 0.00
354 4 0.01
355 58 0.08
356 192 0.26
357 3 0.00
359 1 0.00
361 1 0.00
362 1 0.00
364 1 0.00
365 3 0.00
368 1 0.00
369 105 0.14
370 2 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (341 bp):
CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAAAGAGCGTGCGGGCACTCAGT
CGGCTGAAGAGGCATAATGCACAAGCCGGGGATCAGCCCGGTCCCCTCTACGTGCTGACGGTCCG
CTGCCACAACCCTCGGTCCGATTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
CACGAAACGGGCGTGCGGGTGCTCAGTCGACCGGAGAGGCAAAATGCACAAGCCAGGGAACGACC
CGATCCCCTCTCCGTGCTACCGATCCTACTATCGCAACCCTCGGTCTGATCCAATCTTAGAATAG
GAATGAACTCCGTACG
Found at i:33660933 original size:26 final size:26
Alignment explanation
Indices: 33660897--33660949 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33660887 CCGATCTGAT
33660897 CTTAGACT-GGGAATGAACTCCATATG
1 CTTAGACTGGGGAA-GAACTCCATATG
*
33660923 CTTAGATTGGGGAAGAACTCCATATG
1 CTTAGACTGGGGAAGAACTCCATATG
33660949 C
1 C
33660950 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGGAAGAACTCCATATG
Found at i:33661405 original size:557 final size:567
Alignment explanation
Indices: 33660514--33661562 Score: 1360
Period size: 557 Copynumber: 1.9 Consensus size: 567
33660504 TACTGATCCC
33660514 GCTGCCACAACCCTTGGTTCGATTGGGGCTTGGACAAGGAATGAACTCCGTATGCCTAAGCCAAC
1 GCTGCCACAACCCTTGGTTCGATTGGGGCTTGGACAAGGAATGAACTCCGTATGCCTAAGCCAAC
* ** *
33660579 CCATGAAACGAGCGTGCGGGTGCTCAACCGGCTAGAGAGGCAGAATGCACGAGCCAGGGATCAAC
66 CCAGGAAACGAGCGTGCGGGCACTCAACCGGCTAGAGAGGCAGAATGCACAAGCCAGGGATCAAC
* * * *
33660644 CTGGTCCCCTCTTGAGTGCTATCGATCTCGCTACTGGTCCTGCTATCGCAACCCTCGATCTGGTT
131 CTGGCCCCCTCTTGAGTGCTACCGATCTCGCTACTGGTCCTACTACCGCAACCCTCGATC----T
* *
33660709 CGATCTTAGATTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATACCTAAGCCA
192 CGATCTTAGACTGGGAATGAACTCCATATGCTTAGACAAGGAATGAACTCCGTATACCTAAGCCA
* * * * * *
33660774 ACCTACGAAACGAGCGTGCGGGCGCTCAGCCGATCGAAGAGGCAGAATGCGTAAGCCAGGGATCG
257 ACCCACGAAACGAGCGTACGGGAGCTCAACCGATCGAAGAGACAGAATGCGCAAGCCAGGGATCG
*
33660839 ACCCGATCCC-CCTCGCGTGCTATCGAT-C-CTGCT-G-C-TG-C-AACCCTCAGTCCGATCTGA
322 ACCCGATCCCTCCT-ACGTGCTATCGATCCACTGCTGGTCTTGTCGAACCCTCAGTCCGATCTGA
* * *
33660896 TCTTAGACTGGGAATGAACTCCATATGCTTAGA-TTGGGGAA-GAACTCCATATGCCTAAGTCAA
386 TCTTAGACTGAGAATGAACTCCATATGCTTAGACAT--GGAATGAACTCCATATGCCTAAGCCAA
*
33660959 CCCACGAAACGAACGTGCGGGTGCTCAGTCGACCGAAGAGGTCGGTCGAAGTGGCATAATGCGCA
449 CCCACGAAACGAACGTGCGGGTGCTCAGCCGACCGAAGAGGTCGGTCGAAGTGGCATAATGCGCA
33661024 AGCCGGGGATCAGCCTGGTCCCCTCTGTGTGCTGCCGATCCCGATGCCGGTCCT
514 AGCCGGGGATCAGCCTGGTCCCCTCTGTGTGCTGCCGATCCCGATGCCGGTCCT
* * * * *
33661078 GCTGCCACAACCCTTGG-TCTGGTTGGGGCTTGGTCATGGAATGAACT-CGTATGCTTAAGCCAG
1 GCTGCCACAACCCTTGGTTC-GATTGGGGCTTGGACAAGGAATGAACTCCGTATGCCTAAGCCAA
* * * ** *
33661141 CCCAGGAAACTAGCGTGCGGGCACTCAATCGG-TCGTAGAGGCAGAATGCGTAAGTC-GAGGATC
65 CCCAGGAAACGAGCGTGCGGGCACTCAACCGGCTAG-AGAGGCAGAATGCACAAGCCAG-GGATC
* * *
33661204 -AGCTCGGCCCCCTC-T-ACGTGCTACCGATCTTGCTGCTGGTCCTACTACCGCAACCCTCGATC
128 AACCT-GGCCCCCTCTTGA-GTGCTACCGATCTCGCTACTGGTCCTACTACCGCAACCCTCGATC
* * *
33661266 -CGATCTTAGGCTGGGAATGAACTCCATATGCTTAGACAAGGAATGAACTCTGTATGCCTAAGCC
191 TCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACAAGGAATGAACTCCGTATACCTAAGCC
* * *
33661330 AACCCACGAAACGAGCGTACGGGAGCTCAACCGGTCGAAGAGACAGAATGTGCAAGTCAGGGATC
256 AACCCACGAAACGAGCGTACGGGAGCTCAACCGATCGAAGAGACAGAATGCGCAAGCCAGGGATC
*** * * * *
33661395 GGTTCGATCCCTCCTACGTGCTGTCGATCCTACTGCTGGTCTTGTTACCGTAACCCTCGGTCTGG
321 GACCCGATCCCTCCTACGTGCTATCGATCC-ACTGCTGGTCTTG-T--CG-AACCCTCAGTCCGA
*
33661460 TCTGATCTTAGACTGAGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCATATGCCTAAGC
381 TCTGATCTTAGACTGAGAATGAACTCCATATGCTTAGACATGGAATGAACTCCATATGCCTAAGC
* *
33661525 CAACCCACGAAACGAGCGTGCGGGTTCTCAGCCGACCG
446 CAACCCACGAAACGAACGTGCGGGTGCTCAGCCGACCG
33661563 GAAATGTAGA
Statistics
Matches: 414, Mismatches: 51, Indels: 35
0.83 0.10 0.07
Matches are distributed among these distances:
557 134 0.32
558 4 0.01
560 5 0.01
561 2 0.00
562 48 0.12
563 74 0.18
564 41 0.10
567 1 0.00
568 4 0.01
569 100 0.24
570 1 0.00
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (567 bp):
GCTGCCACAACCCTTGGTTCGATTGGGGCTTGGACAAGGAATGAACTCCGTATGCCTAAGCCAAC
CCAGGAAACGAGCGTGCGGGCACTCAACCGGCTAGAGAGGCAGAATGCACAAGCCAGGGATCAAC
CTGGCCCCCTCTTGAGTGCTACCGATCTCGCTACTGGTCCTACTACCGCAACCCTCGATCTCGAT
CTTAGACTGGGAATGAACTCCATATGCTTAGACAAGGAATGAACTCCGTATACCTAAGCCAACCC
ACGAAACGAGCGTACGGGAGCTCAACCGATCGAAGAGACAGAATGCGCAAGCCAGGGATCGACCC
GATCCCTCCTACGTGCTATCGATCCACTGCTGGTCTTGTCGAACCCTCAGTCCGATCTGATCTTA
GACTGAGAATGAACTCCATATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGA
AACGAACGTGCGGGTGCTCAGCCGACCGAAGAGGTCGGTCGAAGTGGCATAATGCGCAAGCCGGG
GATCAGCCTGGTCCCCTCTGTGTGCTGCCGATCCCGATGCCGGTCCT
Found at i:33661505 original size:26 final size:26
Alignment explanation
Indices: 33661466--33661518 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33661456 CTGGTCTGAT
*
33661466 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCATATG
33661492 CTTAGACATG-GAATGAACTCCATATG
1 CTTAGAC-TGAGAATGAACTCCATATG
33661518 C
1 C
33661519 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCATATG
Found at i:33661509 original size:196 final size:190
Alignment explanation
Indices: 33661112--33661548 Score: 511
Period size: 191 Copynumber: 2.3 Consensus size: 190
33661102 GGGGCTTGGT
* * * * * *
33661112 CATGGAATGAACTCGTATGCTTAAGCCAGCCCAGGAAACTAGCGTGCGGGCACTCAATCGGTCGT
1 CATGGAATGAACTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAACCGGTCGA
* * * *
33661177 AGAGGCAGAATGCGTAAGTCGAGGATCAGCTCGGCCCCCTCTACGTGCTACCGATCTTGCTGCTG
66 AGAGACAGAATGCGCAAGTCGAGGATCAGCTCGGCCCCCTCTACGTGCTACCGATCCTACTGCTG
* *
33661242 GTCCTACTACCGCAACCCTCGATCCGATCTTAGGCTGGGAATGAACTCCATATGCTTAGA
131 GTCCTACTACCGCAACCCTCGATCCGATCTTAGACTGAGAATGAACTCCATATGCTTAGA
* *
33661302 CAAGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGG-AGCTCAACCGGTC
1 CATGGAATGAACTC-GTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCA-CTCAACCGGTC
* * * ** **
33661366 GAAGAGACAGAATGTGCAAGTC-AGGGATCGGTTC-GATCCCTCCTACGTGCTGTCGATCCTACT
64 GAAGAGACAGAATGCGCAAGTCGA-GGATCAGCTCGGCCCCCT-CTACGTGCTACCGATCCTACT
* ** * * *
33661429 GCTGGTCTTGTTACCGTAACCCTCGGTCTGGTCTGATCTTAGACTGAGAATGAACTCCGTATGCT
127 GCTGGTCCTACTACCGCAACCCTCGATC----C-GATCTTAGACTGAGAATGAACTCCATATGCT
33661494 TAGA
187 TAGA
*
33661498 CATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGG
1 CATGGAATGAACT-CGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGG
33661549 TTCTCAGCCG
Statistics
Matches: 207, Mismatches: 30, Indels: 14
0.82 0.12 0.06
Matches are distributed among these distances:
190 20 0.10
191 107 0.52
195 1 0.00
196 78 0.38
197 1 0.00
ACGTcount: A:0.25, C:0.27, G:0.26, T:0.22
Consensus pattern (190 bp):
CATGGAATGAACTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAACCGGTCGA
AGAGACAGAATGCGCAAGTCGAGGATCAGCTCGGCCCCCTCTACGTGCTACCGATCCTACTGCTG
GTCCTACTACCGCAACCCTCGATCCGATCTTAGACTGAGAATGAACTCCATATGCTTAGA
Found at i:33661576 original size:196 final size:196
Alignment explanation
Indices: 33661267--33661619 Score: 476
Period size: 196 Copynumber: 1.8 Consensus size: 196
33661257 CCCTCGATCC
* * **
33661267 GATCTTAGGCTGGGAATGAACTCCATATGCTTAGACAAGGAATGAACTCTGTATGCCTAAGCCAA
1 GATCTTAGACTGAGAATGAACTCCATATGCTTAGACAAGGAATGAACTCCATATGCCTAAGCCAA
** * *
33661332 CCCACGAAACGAGCGTACGGGAGCTCAACCGGTCGAAGAGACAGAATGTGCAAGTCAGGGATCGG
66 CCCACGAAACGAGCGTACGGGAGCTCAACCGACCGAAGAGACAGAATGTACAAGTCAGGGATCCG
** *
33661397 TTCGATCCCTCCTACGTGCTGTCGATCCTACTGCTGGTCTTGTTACCGTAACCCTCGGTCTGGTC
131 CCCGATCCCCCCTACGTGCTGTCGATCCTACTGCTGGTCTTGTTACCGTAACCCTCGGTCTGGTC
33661462 T
196 T
* *
33661463 GATCTTAGACTGAGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAA
1 GATCTTAGACTGAGAATGAACTCCATATGCTTAGACAAGGAATGAACTCCATATGCCTAAGCCAA
* ** * * **
33661528 CCCACGAAACGAGCGTGCGGGTTCTCAGCCGACCGGAA-ATG-TAGAATGTACAAGTTGGGGATC
66 CCCACGAAACGAGCGTACGGGAGCTCAACCGACC-GAAGA-GACAGAATGTACAAGTCAGGGATC
**
33661591 CGCCCGATCCCCCCTGTGTGCTGTCGATC
129 CGCCCGATCCCCCCTACGTGCTGTCGATC
33661620 TGGCTGCTGT
Statistics
Matches: 133, Mismatches: 22, Indels: 4
0.84 0.14 0.03
Matches are distributed among these distances:
196 129 0.97
197 4 0.03
ACGTcount: A:0.25, C:0.26, G:0.26, T:0.23
Consensus pattern (196 bp):
GATCTTAGACTGAGAATGAACTCCATATGCTTAGACAAGGAATGAACTCCATATGCCTAAGCCAA
CCCACGAAACGAGCGTACGGGAGCTCAACCGACCGAAGAGACAGAATGTACAAGTCAGGGATCCG
CCCGATCCCCCCTACGTGCTGTCGATCCTACTGCTGGTCTTGTTACCGTAACCCTCGGTCTGGTC
T
Found at i:33662316 original size:156 final size:158
Alignment explanation
Indices: 33661988--33663048 Score: 523
Period size: 158 Copynumber: 6.6 Consensus size: 158
33661978 ACTTCGTATG
* * * *
33661988 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTACGGGCGCTAAGC
1 CTTAGA-TGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAGGAGCATACGGGCGCTAAGC
* * * * *
33662053 TGGCCAGAGAGGCATAATGCGCAAGTCGGGGATCGACCCGGTCCCCCTCTGCGTGCTGTCGGTCC
65 CGGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTCTGCGTGCTGCCGATCC
* *
33662118 CACTACCACAACCCTCGGTCTGGCTGGGT
130 CACTACCACAACCCTCGGTCCGGCTGGAT
* * *
33662147 CTTAGGCAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGA-CATGCGGGCGCTCA
1 CTTA-G-ATGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAA-GGAGCATACGGGCGCTAA
* * *
33662210 GCCGGTC-GAGAGGCAGAATGCGCATGCCGGGGATCGGCCCGGT-CCCC-CTGCGTGCTGCCGAT
63 GCCGGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTCTGCGTGCTGCCGAT
* *
33662272 CCTACTACCGCAACCCTCGGTCCGGTCT-GAT
128 CCCACTACCACAACCCTCGGTCCGG-CTGGAT
* * * * * *
33662303 CTTAGATTGGGAATGAACTCCGTATG-CTTAG---A--CATGGAATGAAC-TCCGTATGC-CTAA
1 CTTAGA-TGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAGGAGCATACG--GGCGCTAA
* ** * * * * * *
33662360 CCCAACTAACA-AAATGAGCGTGTAGGCGCTCAGCCGGTCGGAGAGGCAAAATGTGCAACCCGGG
63 GCCGGC---CAGAGA-G-GC-AGAATGCGC-AAG-C---C-G-G-GG----A--T-CGACCC-GG
* * * * ** * * * *
33662424 ATCCCCGGTCCCCCTGCGTGCTGTCAATCCTACTGTCGCAACCCTCGGTCTGGTTTGAT
106 -T--CC---CCCTCTGCGTGCTGCCGATCCCACTACCACAACCCTCGGTCCGGCTGGAT
* * * * * *
33662483 CTTAGATTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTGAGC
1 CTTAGA-TGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAGGAGCATACGGGCGCTAAGC
* * * * * *
33662548 TGGCCGGAGAGGCATAATGCGCAAGCCGGGGATCG-GCCGATCCCCCTCTGCATGCTGCC-AGTC
65 CGGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTCTGCGTGCTGCCGA-TC
* * **
33662611 CCGCTGCCACAACCCTCGGTCCGGCTGGGG
129 CCACTACCACAACCCTCGGTCCGGCTGGAT
* * * ** * *
33662641 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAGCCCACGAAAATGG-GTGTACGGGTGCTC
1 CTTAG--ATGGGAATGAACTCCGTATGCCTAAGCCAACCCATG-AAA-GGAGCATACGGGCGCTA
* * * * * *
33662704 AGCCGGCCAGAGAGGCAGAATGCACAAGCTGGGGATCGGCCCGATCCCCC-CTGCATGCTGTCGA
62 AGCCGGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTCTGCGTGCTGCCGA
** ** * * * * *
33662768 TCCTGCTGTCGCAACCCTCGAT-CTGATCCGAT
127 TCCCACTACCACAACCCTCGGTCCGGCT-GGAT
* * * * * * * *
33662800 CTTAGACTGGGAATGAACTCCGTATGCCTGAGTCAACCCACGAAACGAGCGTGCGGGCGTTGAGC
1 CTTAGA-TGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAGGAGCATACGGGCGCTAAGC
* ** * * * * * * * *
33662865 CGACTGGAGCGGCATAATGCGCATGTCGGGGATCGTCCAGGT-CCCCTCTACGTGCTGTCGATCC
65 CGGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTCTGCGTGCTGCCGATCC
* **
33662929 CGCTACCACAACCCTCGGTCCGGCTGGGG
130 CACTACCACAACCCTCGGTCCGGCTGGAT
* * * * *
33662958 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGG-GCGTGCGGGCGCTCA
1 CTTAG--ATGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAA-GGAGCATACGGGCGCTAA
* * *
33663021 GCTGGCCGGATAGGCAGAATGCGCAAGC
63 GCCGGCCAGAGAGGCAGAATGCGCAAGC
33663049 AGGGAGCGGC
Statistics
Matches: 685, Mismatches: 151, Indels: 133
0.71 0.16 0.14
Matches are distributed among these distances:
149 5 0.01
150 12 0.02
151 2 0.00
152 1 0.00
153 3 0.00
154 2 0.00
155 8 0.01
156 63 0.09
157 14 0.02
158 252 0.37
159 169 0.25
160 18 0.03
161 4 0.01
162 1 0.00
163 2 0.00
164 3 0.00
165 2 0.00
166 1 0.00
167 1 0.00
168 1 0.00
169 1 0.00
170 1 0.00
171 4 0.01
172 2 0.00
173 3 0.00
174 1 0.00
175 1 0.00
176 2 0.00
179 5 0.01
180 65 0.09
181 9 0.01
182 2 0.00
183 2 0.00
184 3 0.00
185 2 0.00
186 15 0.02
187 3 0.00
ACGTcount: A:0.21, C:0.31, G:0.29, T:0.19
Consensus pattern (158 bp):
CTTAGATGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAGGAGCATACGGGCGCTAAGCC
GGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTCTGCGTGCTGCCGATCCC
ACTACCACAACCCTCGGTCCGGCTGGAT
Found at i:33662358 original size:341 final size:338
Alignment explanation
Indices: 33661650--33662634 Score: 1062
Period size: 341 Copynumber: 2.9 Consensus size: 338
33661640 CCGATCCGAT
* * *
33661650 CTTAGACTGGCAATGAACTCTGTATGCCTAAGTCAACCCATAAA--A-CG-AGCGGGCACTGAGC
1 CTTAGACTGG-AATGAACTCCGTATGCCTAAGTCAACCCATAAATGAGCGTA-CGGGCGCTAAGC
* * * *
33661711 CGGCCAGAGAGGCATAATACGCAAGCCAGGGATCAACCGATCCCCCTCTGCGTGCTGCCAGTCCT
64 CGGCCAGAGAGGCATAATGCGCAAGCCAGGGATCACCCGGTCCCCCTCTGCGTGCTGTCAGTCCT
* * * *
33661776 GCTGCCACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
129 ACTGCCACAACCCTCGGTCTGGCTGGGTCTTAGGCATGGAATGAACTCCCTATGCCTAAGCCAAC
** * ** * * * * * * *
33661841 CCATGAAACGGGTGTGCAGATGCTCAGTCGATTGGAGAAGCAGAATGCGCAAGTCGGGGAACGAC
194 CCATGAAACGGACGTGCGGGCGCTCAGCCG-GTCGAGAGGCAGAATGCGCAAGCCGGGGATCGGC
* * * **
33661906 CCGGTCCCACCTGTGTGCTACCGATCCTACTACCGCAACCCTCGATCCAATCTGATCTTAGACTA
258 CCGGTCCC-CCTGCGTGCTGCCGATCCTACTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTA
*
33661971 AGAATGAACTTCGTATG
322 AGAATGAACTCCGTATG
*
33661988 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTACGGGCGCTAAGC
1 CTTAGACT-GGAATGAACTCCGTATGCCTAAGTCAACCCAT-AAATGAGCGTACGGGCGCTAAGC
* * * *
33662053 TGGCCAGAGAGGCATAATGCGCAAGTCGGGGATCGACCCGGTCCCCCTCTGCGTGCTGTCGGTCC
64 CGGCCAGAGAGGCATAATGCGCAAGCCAGGGATC-ACCCGGTCCCCCTCTGCGTGCTGTCAGTCC
* *
33662118 CACTACCACAACCCTCGGTCTGGCTGGGTCTTAGGCATGGAATGAACTCCCTATGCCTAAGCCAA
128 TACTGCCACAACCCTCGGTCTGGCTGGGTCTTAGGCATGGAATGAACTCCCTATGCCTAAGCCAA
* *
33662183 CCCATGAAACGGACATGCGGGCGCTCAGCCGGTCGAGAGGCAGAATGCGCATGCCGGGGATCGGC
193 CCCATGAAACGGACGTGCGGGCGCTCAGCCGGTCGAGAGGCAGAATGCGCAAGCCGGGGATCGGC
* **
33662248 CCGGTCCCCCTGCGTGCTGCCGATCCTACTACCGCAACCCTCGGTCCGGTCTGATCTTAGATTGG
258 CCGGTCCCCCTGCGTGCTGCCGATCCTACTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTAA
33662313 GAATGAACTCCGTATG
323 GAATGAACTCCGTATG
** * *** *
33662329 CTTAGACATGGAATGAACTCCGTATGCCTAACCCAACTAACA-AAATGAGCGTGTAGGCGCTCAG
1 CTTAGAC-TGGAATGAACTCCGTATGCCTAAGTCAAC--CCATAAATGAGCGTACGGGCGCTAAG
* * * * * *
33662393 CCGGTCGGAGAGGCAAAATGTGCAA-CCCGGGATC-CCCGGT-CCCC-CTGCGTGCTGTCAATCC
63 CCGGCCAGAGAGGCATAATGCGCAAGCCAGGGATCACCCGGTCCCCCTCTGCGTGCTGTCAGTCC
* * * * * ** *
33662454 TACTGTCGCAACCCTCGGTCTGGTTTGATCTTA-G-ATTGGGAATGAACTCTGTATGCCTAAGTC
128 TACTGCCACAACCCTCGGTCTGGCTGGGTCTTAGGCA-T-GGAATGAACTCCCTATGCCTAAGCC
* * * * *
33662517 AACCCATGAAA-TGAGCGTGCGGGCGCTGAGCTGGCCGGAGAGGCATAATGCGCAAGCCGGGGAT
191 AACCCATGAAACGGA-CGTGCGGGCGCTCAGCCGGTC-GAGAGGCAGAATGCGCAAGCCGGGGAT
* * ** * *
33662581 CGG-CCGATCCCCCTCTGCATGCTGCC-AGTCCCGCTGCCACAACCCTCGGTCCGG
254 CGGCCCGGT-CCCC-CTGCGTGCTGCCGA-TCCTACTACCGCAACCCTCGGTCCGG
33662635 CTGGGGCTTA
Statistics
Matches: 549, Mismatches: 81, Indels: 34
0.83 0.12 0.05
Matches are distributed among these distances:
334 1 0.00
335 4 0.01
336 95 0.17
337 37 0.07
338 75 0.14
339 5 0.01
340 7 0.01
341 135 0.25
342 78 0.14
343 112 0.20
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (338 bp):
CTTAGACTGGAATGAACTCCGTATGCCTAAGTCAACCCATAAATGAGCGTACGGGCGCTAAGCCG
GCCAGAGAGGCATAATGCGCAAGCCAGGGATCACCCGGTCCCCCTCTGCGTGCTGTCAGTCCTAC
TGCCACAACCCTCGGTCTGGCTGGGTCTTAGGCATGGAATGAACTCCCTATGCCTAAGCCAACCC
ATGAAACGGACGTGCGGGCGCTCAGCCGGTCGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCG
GTCCCCCTGCGTGCTGCCGATCCTACTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTAAGAA
TGAACTCCGTATG
Found at i:33662667 original size:158 final size:156
Alignment explanation
Indices: 33662328--33663101 Score: 716
Period size: 158 Copynumber: 4.9 Consensus size: 156
33662318 AACTCCGTAT
* ** * **
33662328 GCTTAGACATGGAATGAACTCCGTATGCCTAACCCAACTAACAAAATGAGCGTGTAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* * * * * * * * *
33662393 CCGGTCGGAGAGGCAAAATGTGCAA-CCCGGGATC-CCCGGTCCCCCTGCGTGCTGTCAATCCTA
66 CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCGATCCCCCTGCATGCTGTCGATCCTG
* * * * *
33662456 CTGTCGCAACCCTCGGTCTGGTTTGA
131 CTGCCACAACCCTCGGTCCGGCTGGA
* * * * * *
33662482 TCTTAGA-TTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCA
* * *
33662546 GCTGGCCGGAGAGGCATAATGCGCAAGCCGGGGATCGGCCGATCCCCCTCTGCATGCTG-CCAGT
65 GCCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCGAT-CCCC-CTGCATGCTGTCGA-T
* *
33662610 CCCGCTGCCACAACCCTCGGTCCGGCTGGG
127 CCTGCTGCCACAACCCTCGGTCCGGCTGGA
* * * * * *
33662640 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAGCCCACGAAAATGGGTGTACGGGTGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACG-AAATGAGCGTGCGGGCGCTCA
* * *
33662705 GCCGGCCAGAGAGGCAGAATGCACAAGCTGGGGATCGGCCCGATCCCCCCTGCATGCTGTCGATC
65 GCCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGG-CCGAT-CCCCCTGCATGCTGTCGATC
* * * * * *
33662770 CTGCTGTCGCAACCCTCGAT-CTGATCCGA
128 CTGCTGCCACAACCCTCGGTCCGGCT-GGA
* * * * * *
33662799 TCTTAGAC-TGGGAATGAACTCCGTATGCCTGAGTCAACCCACGAAACGAGCGTGCGGGCGTTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCA
* * * * * * * * * *
33662863 GCCGACTGGAGCGGCATAATGCGCATGTCGGGGATCGTCCAGGTCCCCTCTACGTGCTGTCGATC
65 GCCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCC-GATCCCC-CTGCATGCTGTCGATC
* * *
33662928 CCGCTACCACAACCCTCGGTCCGGCTGGG
128 CTGCTGCCACAACCCTCGGTCCGGCTGGA
* * *
33662957 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* * * * * *
33663022 CTGGCCGGATAGGCAGAATGCGCAAG-CAGGGAGCGGCCCGATCCCCCTGCATGTTGCCGATCCT
66 CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGG-CCGATCCCCCTGCATGCTGTCGATCCT
*
33663086 GCTGCCATAACCCTCG
130 GCTGCCACAACCCTCG
33663102 ATCCAATCTG
Statistics
Matches: 489, Mismatches: 114, Indels: 32
0.77 0.18 0.05
Matches are distributed among these distances:
153 1 0.00
154 72 0.15
155 8 0.02
156 31 0.06
157 25 0.05
158 221 0.45
159 119 0.24
160 12 0.02
ACGTcount: A:0.21, C:0.31, G:0.29, T:0.19
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCGATCCCCCTGCATGCTGTCGATCCTG
CTGCCACAACCCTCGGTCCGGCTGGA
Found at i:33662852 original size:317 final size:315
Alignment explanation
Indices: 33662328--33663140 Score: 1012
Period size: 317 Copynumber: 2.6 Consensus size: 315
33662318 AACTCCGTAT
* * **
33662328 GCTTAGACATGGAATGAACTCCGTATGCCTAACCCAACTAAC-AAAATGAGCGTGTA--GGCGCT
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAATG-G-GTGTACGGGCGCT
* * * * * * * *
33662390 CAGCCGGTCGGAGAGGCAAAATGTGCAACCCGGGATC--CCCGGTCCCCCTGCGTGCTGTCAATC
64 CAGCCGGCCGGAGAGGCAGAATGCGCAAGCAGGGATCGGCCCGATCCCCCTGCATGCTGTCGATC
* * * * * *
33662453 CTACTGTCGCAACCCTCGGTCTGGTTTGATCTTAGATTGGGAATGAACTCTGTATGCCTAAGTCA
129 CTGCTGTCGCAACCCTCGATCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * * *
33662518 ACCCATGAAATGAGCGTGCGGGCGCTGAGCTGGCCGGAGAGGCATAATGCGCAAGCCGGGGATCG
194 ACCCACGAAACGAGCGTGCGGGCGCTGAGCCGACCGGAGAGGCATAATGCGCAAGCCGGGGATCG
* *
33662583 GCC-GATCCCCCTCTGCATGCTGCC-AGTCCCGCTGCCACAACCCTCGGTCCGGCTGGG
259 GCCAGAT-CCCCTCTACATGCTGCCGA-TCCCGCTACCACAACCCTCGGTCCGGCTGGG
* *
33662640 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAGCCCACGAAAATGGGTGTACGGGTGCTCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAATGGGTGTACGGGCGCTCA
* * *
33662705 GCCGGCCAGAGAGGCAGAATGCACAAGCTGGGGATCGGCCCGATCCCCCCTGCATGCTGTCGATC
66 GCCGGCCGGAGAGGCAGAATGCGCAAGC-AGGGATCGGCCCGAT-CCCCCTGCATGCTGTCGATC
* *
33662770 CTGCTGTCGCAACCCTCGATCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTGAGTCA
129 CTGCTGTCGCAACCCTCGATCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * * * *
33662835 ACCCACGAAACGAGCGTGCGGGCGTTGAGCCGACTGGAGCGGCATAATGCGCATGTCGGGGATCG
194 ACCCACGAAACGAGCGTGCGGGCGCTGAGCCGACCGGAGAGGCATAATGCGCAAGCCGGGGATCG
* * * *
33662900 TCCAGGTCCCCTCTACGTGCTGTCGATCCCGCTACCACAACCCTCGGTCCGGCTGGG
259 GCCAGATCCCCTCTACATGCTGCCGATCCCGCTACCACAACCCTCGGTCCGGCTGGG
* * *
33662957 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACG-AAACGGGCGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAATGGGTGTACGGGCGCTCA
* * * * *
33663021 GCTGGCCGGATAGGCAGAATGCGCAAGCAGGGAGCGGCCCGATCCCCCTGCATGTTGCCGATCCT
66 GCCGGCCGGAGAGGCAGAATGCGCAAGCAGGGATCGGCCCGATCCCCCTGCATGCTGTCGATCCT
* ** ** * * *
33663086 GCTGCCATAACCCTCGATCCAATCTGATCTTAGACTAGGAATGTACTCCATATGC
131 GCTGTCGCAACCCTCGATCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGC
33663141 TTAGACTGGG
Statistics
Matches: 431, Mismatches: 61, Indels: 16
0.85 0.12 0.03
Matches are distributed among these distances:
311 5 0.01
312 38 0.09
313 35 0.08
314 72 0.17
315 13 0.03
316 46 0.11
317 219 0.51
318 3 0.01
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.19
Consensus pattern (315 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAATGGGTGTACGGGCGCTCA
GCCGGCCGGAGAGGCAGAATGCGCAAGCAGGGATCGGCCCGATCCCCCTGCATGCTGTCGATCCT
GCTGTCGCAACCCTCGATCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
CCACGAAACGAGCGTGCGGGCGCTGAGCCGACCGGAGAGGCATAATGCGCAAGCCGGGGATCGGC
CAGATCCCCTCTACATGCTGCCGATCCCGCTACCACAACCCTCGGTCCGGCTGGG
Found at i:33663874 original size:26 final size:26
Alignment explanation
Indices: 33663836--33663886 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
33663826 GGCTCAAAAT
*
33663836 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
33663862 CTTAGAC-GTGGAATGAACTCCGTAT
1 CTTAGACTG-GGAATGAACTCCGTAT
33663887 ACCTAAGCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:33664270 original size:159 final size:157
Alignment explanation
Indices: 33663861--33664279 Score: 419
Period size: 159 Copynumber: 2.6 Consensus size: 157
33663851 AACTCTGTAT
* *
33663861 GCTTAGACGTGGAATGAACTCCGTATACCTAAGCCAACCCACGAAACGAGCGTACGAACGCTCAG
1 GCTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACG-GCGCTCAG
* * * * *
33663926 CCGACCAGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCCACTGCGTGCTGTCAATC
64 CCGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCACACTGCGTGCTGCCAATC
** *
33663991 CTACCACTGCAACCCTCGGTCCGGTCTTA
129 CTACCACCACAACCCTCAGTCCGGTCTTA
* * * * * * *
33664020 TCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGCATACGGGCACTGAG
1 GCTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTAC-GGCGCTCAG
* * * * ** * * * **
33664085 CCAGCCGAAGAGGCATAATGCACAAGCTGGGGATCGACCCGATCCCACTCTGCTTGTTGCCGGTC
64 CCGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCACACTGCGTGCTGCCAATC
* **
33664150 CTGCTGCCACAACCCTCAGTCCGG-C-TA
129 CTACCACCACAACCCTCAGTCCGGTCTTA
* * * *
33664177 GGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCAGGTGCTC
1 --GCTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTAC-GGCGCTC
* *
33664242 AGCCGGCCGGAGAGACAGAATGTGCAAGCCAGGGATCG
62 AGCCGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCG
33664280 GCCAGGTCCC
Statistics
Matches: 204, Mismatches: 51, Indels: 10
0.77 0.19 0.04
Matches are distributed among these distances:
157 2 0.01
158 2 0.01
159 198 0.97
160 2 0.01
ACGTcount: A:0.26, C:0.31, G:0.26, T:0.16
Consensus pattern (157 bp):
GCTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGCGCTCAGCC
GGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCACACTGCGTGCTGCCAATCCT
ACCACCACAACCCTCAGTCCGGTCTTA
Found at i:33664755 original size:159 final size:159
Alignment explanation
Indices: 33664453--33664884 Score: 372
Period size: 159 Copynumber: 2.7 Consensus size: 159
33664443 CCTAGCATGT
* * * * * * * * *
33664453 GCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCGCGAAACGAGCGTGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCATAAGCCAACCCACAAAACGAGCGTGCGAGAGCTGAG
** * * *** * * * *
33664518 CCGATCGGAGAGGTAGAATGTGTAAG-TCGGTGATAGGCCCGATCCTCCCC--TGCATGCTGTCT
66 CCGGCCGGAAAGGCAGAATGCACAAGCTAGG-GATCGGCCCGA-CC-CCCCTTTGCGTGCTGTCG
* * ** * *
33664580 ATCCTGCTGTCGCAACCCTTGGTCCAGTCTGA-
128 GTCCCGCTACCACAACCCTCGGTCCAG-CTGAG
* * * * *
33664612 TCTTAGAC-TGGAAATGAACTCCGTATGCATAAGTCAACCCACAAAACGAGCGTGCGGGAGTTGA
1 GCTTAGACATGG-AATGAACTCCCTATGCATAAGCCAACCCACAAAACGAGCGTGCGAGAGCTGA
* * * *
33664676 GCCGGCCGGAGAGGCATAATGCGCAAGCT-GAGGATCGGCCCGATCCCCCTTTGCGTGCTGTCGG
65 GCCGGCCGGAAAGGCAGAATGCACAAGCTAG-GGATCGGCCCGACCCCCCTTTGCGTGCTGTCGG
33664740 TCCCGCTACCACAACCCTCGGTCCAGCTGAG
129 TCCCGCTACCACAACCCTCGGTCCAGCTGAG
* * * * * * *
33664771 GCTTAGACATGGAATGAACTCCCTATGCCTCAGCCAACCCACGAAATGGGTGTGCGAGCGCTGAG
1 GCTTAGACATGGAATGAACTCCCTATGCATAAGCCAACCCACAAAACGAGCGTGCGAGAGCTGAG
* *
33664836 CTGGCCGGAAAGGTAGAATGCACAAGCTAGGGATCGGCCCGACCCCCCT
66 CCGGCCGGAAAGGCAGAATGCACAAGCTAGGGATCGGCCCGACCCCCCT
33664885 GTGTGCTGCC
Statistics
Matches: 221, Mismatches: 44, Indels: 16
0.79 0.16 0.06
Matches are distributed among these distances:
157 4 0.02
158 8 0.04
159 203 0.92
160 6 0.03
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.19
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCCTATGCATAAGCCAACCCACAAAACGAGCGTGCGAGAGCTGAG
CCGGCCGGAAAGGCAGAATGCACAAGCTAGGGATCGGCCCGACCCCCCTTTGCGTGCTGTCGGTC
CCGCTACCACAACCCTCGGTCCAGCTGAG
Found at i:33665152 original size:171 final size:170
Alignment explanation
Indices: 33664954--33665404 Score: 566
Period size: 171 Copynumber: 2.6 Consensus size: 170
33664944 TAGATTGGGG
* * * *
33664954 ATGAACTACGTATGCCTAAGTCAACCCACGAAATGAGCGTGCAGGCACTCAGCCGATCGGAGAGG
1 ATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGA-CGGAGAGG
* ** * * *
33665019 CATAATGCGCAAGCCGGGGATCAGCTTGGTCCCCCTCTGCGTGCTGCCGATCCCGCTGTTGATCC
65 CAGAATGCGCAAGCCGGGGATCAGCCCGATCCCCCTCTGCGTGCTGCCGATCCCACTGTCGATCC
* *
33665084 TGCTGCCACAACCCTCGGTCC-AGCTGGGGCTTAGACAGGGA
130 TACTGCCACAACCCTCAGTCCGA-CTGGGGCTTAGACAGGGA
* * * *
33665125 ATGAACTCCGTATGTCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGGCCGGAGAGG
1 ATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGC-CGACGGAGAGG
* * * * * *
33665190 TAGAATGCGCAAGCTGGGGATTAGCCCGATCCCCCTCTGCGTGCTGTCGATCCCATTGTCGGTCC
65 CAGAATGCGCAAGCCGGGGATCAGCCCGATCCCCCTCTGCGTGCTGCCGATCCCACTGTCGATCC
*
33665255 TACTGCCACAACCCTCAGTCCGACTGGGGCTTAGACATGGA
130 TACTGCCACAACCCTCAGTCCGACTGGGGCTTAGACAGGGA
* ** **
33665296 ATG-ACTCCATATGCCTAAGCCAACCCATAAAATGAGCGTGCGGGCGCTCAATCGACTGGAGAGG
1 ATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGAC-GGAGAGG
* * *
33665360 CAGAATGCACAAGCCGAGGATCAGCCCGATCCCCC-CTGCATGCTG
65 CAGAATGCGCAAGCCGGGGATCAGCCCGATCCCCCTCTGCGTGCTG
33665405 TCAATCCTAC
Statistics
Matches: 239, Mismatches: 38, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
169 11 0.05
170 79 0.33
171 147 0.62
172 2 0.01
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.18
Consensus pattern (170 bp):
ATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGACGGAGAGGC
AGAATGCGCAAGCCGGGGATCAGCCCGATCCCCCTCTGCGTGCTGCCGATCCCACTGTCGATCCT
ACTGCCACAACCCTCAGTCCGACTGGGGCTTAGACAGGGA
Found at i:33665311 original size:341 final size:341
Alignment explanation
Indices: 33664748--33665384 Score: 739
Period size: 341 Copynumber: 1.9 Consensus size: 341
33664738 GGTCCCGCTA
* *
33664748 CCACAACCCTCGGTCCAGCTGAGGCTTAGACATGGAATGAACTCCCTATGCCTCAGCCAACCCAC
1 CCACAACCCTCGGTCCAGCTGAGGCTTAGACAGGGAATGAACTCCCTATGCCTAAGCCAACCCAC
* * * * *
33664813 GAAATGGGTGTGCGAGCGCTGAGCTGGCCGGAAAGGTAGAATGCACAAGCTAGGGATCGGCCCGA
66 GAAACGAGCGTGCGAGCGCTCAGCTGGCCGGAAAGGTAGAATGCACAAGCTAGGGATCAGCCCGA
* * * * *** *
33664878 CCCCCCTGTGTGCTGCCGATCCTACTGCCGCTACCTTCGGTAGACTAGGGATGAACTCCATATGC
131 CCCCCCTGCGTGCTGCCGATCCCACTGCCGCTACCTACGGTACACTAACCATGAACTCCATAGGC
* * * * * *
33664943 TTAGATTGGGGATGAACTACGTATGCCTAAGTCAACCCACGAAATGAGCGTGCAGGCACTCAGCC
196 TTAGAATGGGAATGAACTACATATGCCTAAGCCAACCCACAAAATGAGCGTGCAGGCACTCAACC
* * *
33665008 GA-TCGGAGAGGCATAATGCGCAAGCCGGGGATCAGCTTGGTCCCCCTCTGCGTGCTGCCGATCC
261 GACT-GGAGAGGCAGAATGCACAAGCCGAGGATCAGCTTGGTCCCCCTCTGCGTGCTGCCGATCC
33665072 CGCTGTTGATCCTGCTG
325 CGCTGTTGATCCTGCTG
* * *
33665089 CCACAACCCTCGGTCCAGCTGGGGCTTAGACAGGGAATGAACTCCGTATGTCTAAGCCAACCCAC
1 CCACAACCCTCGGTCCAGCTGAGGCTTAGACAGGGAATGAACTCCCTATGCCTAAGCCAACCCAC
* * * * *
33665154 GAAACGAGCGTGCGGGCGCTCAGCTGGCCGGAGAGGTAGAATGCGCAAGCTGGGGATTAGCCCGA
66 GAAACGAGCGTGCGAGCGCTCAGCTGGCCGGAAAGGTAGAATGCACAAGCTAGGGATCAGCCCGA
* * * * * * * * *
33665219 TCCCCCTCTGCGTGCTGTCGATCCCATTGTCGGT-CCTACTG-CCAC-AACCCT-CAGTCCGACT
131 -CCCCC-CTGCGTGCTGCCGATCCCACTGCCGCTACCTACGGTACACTAACCATGAACTCC-A-T
* * * * *
33665280 GGGGCTTAGACAT-GGAATG-ACTCCATATGCCTAAGCCAACCCATAAAATGAGCGTGCGGGCGC
192 -AGGCTTAGA-ATGGGAATGAACTACATATGCCTAAGCCAACCCACAAAATGAGCGTGCAGGCAC
*
33665343 TCAATCGACTGGAGAGGCAGAATGCACAAGCCGAGGATCAGC
255 TCAACCGACTGGAGAGGCAGAATGCACAAGCCGAGGATCAGC
33665385 CCGATCCCCC
Statistics
Matches: 242, Mismatches: 47, Indels: 14
0.80 0.16 0.05
Matches are distributed among these distances:
339 4 0.02
340 3 0.01
341 190 0.79
342 23 0.10
343 22 0.09
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (341 bp):
CCACAACCCTCGGTCCAGCTGAGGCTTAGACAGGGAATGAACTCCCTATGCCTAAGCCAACCCAC
GAAACGAGCGTGCGAGCGCTCAGCTGGCCGGAAAGGTAGAATGCACAAGCTAGGGATCAGCCCGA
CCCCCCTGCGTGCTGCCGATCCCACTGCCGCTACCTACGGTACACTAACCATGAACTCCATAGGC
TTAGAATGGGAATGAACTACATATGCCTAAGCCAACCCACAAAATGAGCGTGCAGGCACTCAACC
GACTGGAGAGGCAGAATGCACAAGCCGAGGATCAGCTTGGTCCCCCTCTGCGTGCTGCCGATCCC
GCTGTTGATCCTGCTG
Done.