Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 369 of 402
Found at i:33665785 original size:26 final size:26
Alignment explanation
Indices: 33665756--33665808 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
33665746 CTGATCCGAT
33665756 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCTGTATG
* *
33665782 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCTGTATG
33665808 C
1 C
33665809 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCTGTATG
Found at i:33666153 original size:26 final size:26
Alignment explanation
Indices: 33666122--33666174 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33666112 CCAGTCCGCT
*
33666122 CTTAGAC-TGGGAATGAAGTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
33666148 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
33666174 C
1 C
33666175 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:33666176 original size:183 final size:182
Alignment explanation
Indices: 33665964--33666507 Score: 696
Period size: 183 Copynumber: 3.0 Consensus size: 182
33665954 TCCGGCTGAG
** *
33665964 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAAACACGAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* ** * *
33666029 CCCGTCGGAGAGGCAGAATGCGCAAGCCAAGGATCGGCCCGGTCCCCCTGCGTGCTATTGATCCT
66 CCCGTCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGGTCCCCCTACGTGCTGTTGATCCT
* * * * * * *
33666094 GTTGCCGTAACATTTGGTCCAGTCCGCTCTTAGACTGGGAATGAAGTCCGTAT
131 GCTGCCGCAAC-CTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCGTAT
* *
33666147 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * *
33666212 -CCGATCGAAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGGTCCCCCTTACGTGCTGCTGGTC
66 CCCG-TCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGGTCCCCC-TACGTGCTGTTGATC
* ** * * *
33666276 CTGCTGCTGCAACCTCGATCTGGTCCGATCTTAGATTGGGAATGAACTCTGTCT
129 CTGCTGCCGCAACCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCGTAT
* * *
33666330 GCTTAAACATGGAATGAACTCCGTATACCTAAGCCAACCCACGAAACGAGCGAGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * *
33666395 CCAGTCGGAGAGGCAGAATGCACAAGTCGGGGATCGGCCCGATCCCCCCTACGTGCTGTCGATCC
66 CCCGTCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGGT-CCCCCTACGTGCTGTTGATCC
** *
33666460 TGCTGTTGCAACCCTC-AGTCCAGTCTGATCTTAGACTGGGAATGAACT
130 TGCTGCCGCAA-CCTCGA-TCCAGTCCGATCTTAGACTGGGAATGAACT
33666508 TTGTATGCCT
Statistics
Matches: 312, Mismatches: 43, Indels: 11
0.85 0.12 0.03
Matches are distributed among these distances:
182 3 0.01
183 251 0.80
184 58 0.19
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.20
Consensus pattern (182 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCCGTCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGGTCCCCCTACGTGCTGTTGATCCT
GCTGCCGCAACCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCGTAT
Found at i:33666702 original size:159 final size:158
Alignment explanation
Indices: 33666330--33666705 Score: 389
Period size: 158 Copynumber: 2.4 Consensus size: 158
33666320 AACTCTGTCT
* * *
33666330 GCTTAAACATGGAATGAACTC-CGTATACCTAAGCCAACCCACGAAACGAGCGAGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCTC-TATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * *
33666394 GCCAGTCGGAGAGGCAGAATGCACAAGTCGGGGATCGGCCCGATCCCCCCTACGTGCTGTCGATC
65 GCCAGCCGAAGAGGCAGAATACACAAGTCGAGGATCGACCCGATCCCCCCTACGTGCTGCCGATC
* *** * *
33666459 CTGCTGTTGCAACCCTCAGTCCAGTCTGA
130 CCGCTGCCACAACCCTCAGGCCAGACTGA
* * * * * * * *
33666488 TCTTAGAC-TGGGAATGAACTTTGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGTTGA
1 GCTTAGACAT-GGAATGAACTCTCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * *
33666552 GCCGGCCGAAGAGGCATAATACGCAAGTCGATGATCGACCCGATCCCCTTCTACGTGCTGCCGGT
65 GCCAGCCGAAGAGGCAGAATACACAAGTCGAGGATCGACCCGATCCCC-CCTACGTGCTGCCGAT
* *
33666617 CCCGCTGCCACAACCCTC-GGCCCGACTGGG
129 CCCGCTGCCACAACCCTCAGGCCAGACT-GA
* * *
33666647 GCTTGGACATGGAATGAACTCTCTATGCCTAAGCCAACCCACGAAACGGGTGTGCGGGC
1 GCTTAGACATGGAATGAACTCTCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGC
33666706 ACTTTGCTGG
Statistics
Matches: 173, Mismatches: 40, Indels: 9
0.78 0.18 0.04
Matches are distributed among these distances:
157 1 0.01
158 95 0.55
159 76 0.44
160 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCTCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCAGCCGAAGAGGCAGAATACACAAGTCGAGGATCGACCCGATCCCCCCTACGTGCTGCCGATCC
CGCTGCCACAACCCTCAGGCCAGACTGA
Found at i:33666724 original size:159 final size:157
Alignment explanation
Indices: 33666330--33666776 Score: 423
Period size: 159 Copynumber: 2.8 Consensus size: 157
33666320 AACTCTGTCT
* * * *
33666330 GCTTAAACATGGAATGAACTC-CGTATACCTAAGCCAACCCACGAAACGAGCGAGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCTC-TATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGC-CTTA
* * * * *
33666394 GCCAGTCGGAGAGGCAGAATGCACAAGTCGGGGATCGGCCCGATCCCCCCTACGTGCTGTCGATC
64 GCCGGTCGGAGAGGCAGAATGCGCAAGTCGAGGATCGACCCGATCCCCCCTACGTGCTGCCGATC
* *** * *
33666459 CTGCTGTTGCAACCCTCAGTCCAGTCTGA
129 CCGCTGCCACAACCCTCAGGCCAGACTGA
* * * * * * *
33666488 TCTTAGAC-TGGGAATGAACTTTGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGTTGA
1 GCTTAGACAT-GGAATGAACTCTCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCCTT-A
* * * * * * *
33666552 GCCGGCCGAAGAGGCATAATACGCAAGTCGATGATCGACCCGATCCCCTTCTACGTGCTGCCGGT
64 GCCGGTCGGAGAGGCAGAATGCGCAAGTCGAGGATCGACCCGATCCCC-CCTACGTGCTGCCGAT
* *
33666617 CCCGCTGCCACAACCCTC-GGCCCGACTGGG
128 CCCGCTGCCACAACCCTCAGGCCAGACT-GA
* * * *
33666647 GCTTGGACATGGAATGAACTCTCTATGCCTAAGCCAACCCACGAAACGGGTGTGCGGGCACTTTG
1 GCTTAGACATGGAATGAACTCTCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGC-CTTAG
* * * * * * * *
33666712 CTGGTCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCTGGTCCCCCCTGCATGCTACCGATCC
65 CCGGTCGGAGAGGCAGAATGCGCAAGTCGAGGATCGACCCGATCCCCCCTACGTGCTGCCGATCC
33666777 TGCTATCGCA
Statistics
Matches: 225, Mismatches: 57, Indels: 14
0.76 0.19 0.05
Matches are distributed among these distances:
157 2 0.01
158 106 0.47
159 114 0.51
160 3 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCTCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCCTTAGC
CGGTCGGAGAGGCAGAATGCGCAAGTCGAGGATCGACCCGATCCCCCCTACGTGCTGCCGATCCC
GCTGCCACAACCCTCAGGCCAGACTGA
Found at i:33666847 original size:26 final size:26
Alignment explanation
Indices: 33666806--33666858 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
33666796 TCGATCTGAT
33666806 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
** *
33666832 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
33666858 C
1 C
33666859 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:33667549 original size:26 final size:26
Alignment explanation
Indices: 33667511--33667563 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33667501 GGCTCAAAAT
33667511 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
33667537 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
33667563 C
1 C
33667564 CTAAGCTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:33668048 original size:26 final size:26
Alignment explanation
Indices: 33668012--33668064 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
33668002 CCTGTTCGAT
33668012 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
33668038 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
33668064 C
1 C
33668065 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:33668690 original size:159 final size:158
Alignment explanation
Indices: 33668392--33668701 Score: 383
Period size: 159 Copynumber: 1.9 Consensus size: 158
33668382 AACTTCATAT
* * * * *
33668392 GCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAATGTATGGGGGCTCAA
1 GCTTAGACAAGGAATAAACTCCCTATGCCTAAGCCAACCCACAAAA-GAAGGCATGGGGACTCAA
* * *
33668457 CCGATCGAAAAGGCAAAATGCGTAAATCGAGGATTGACCCGGTCCCCCTCTGCGTGCTGCCAGTC
65 CCGACCGAAAAGGCAAAATGCGTAAATCGAGGATCGACCCGGTCCCCCTCTGCATGCTGCCAGTC
33668522 CCGCAGTCGTAACCCTCGATCCGACTGGG
130 CCGCAGTCGTAACCCTCGATCCGACTGGG
* *
33668551 GCTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCCACAAAA-ACGGGCATGCGGGCACTC
1 GCTTAGACAAGGAATAAACTCCCTATGCCTAAGCCAACCCACAAAAGA-AGGCATG-GGG-ACTC
* * * * * **
33668615 AGCCGACCGGACAGGCAGAATGCGTAAGTCGAGGATCGACCCGGT-CCCCTCTGCATGCTG-TTG
63 AACCGACCGAAAAGGCAAAATGCGTAAATCGAGGATCGACCCGGTCCCCCTCTGCATGCTGCCAG
* *
33668678 ATCCTGCTGTCGTAACCCTCGATC
128 -TCCCGCAGTCGTAACCCTCGATC
33668702 TAGTCTGATC
Statistics
Matches: 128, Mismatches: 19, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
157 1 0.01
158 5 0.04
159 81 0.63
160 41 0.32
ACGTcount: A:0.26, C:0.30, G:0.25, T:0.18
Consensus pattern (158 bp):
GCTTAGACAAGGAATAAACTCCCTATGCCTAAGCCAACCCACAAAAGAAGGCATGGGGACTCAAC
CGACCGAAAAGGCAAAATGCGTAAATCGAGGATCGACCCGGTCCCCCTCTGCATGCTGCCAGTCC
CGCAGTCGTAACCCTCGATCCGACTGGG
Found at i:33668737 original size:159 final size:157
Alignment explanation
Indices: 33668392--33668737 Score: 367
Period size: 159 Copynumber: 2.2 Consensus size: 157
33668382 AACTTCATAT
* * * *
33668392 GCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAATGTATGGGGGCTCAA
1 GCTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAA-GAAGGCATGGGGACTCAA
* * *
33668457 CCGATCGAAAAGGCAAAATGCGTAAATCGAGGATTGACCCGGTCCCCCTCTGCGTGCTGCCAGTC
64 CCGACCGAAAAGGCAAAATGCGTAAATCGAGGATCGACCCGGTCCCCCTCTGCATGCTGCCAGTC
* *
33668522 CCGCAGTCGTAACCCTCGATCCGACTGGG
129 CCGCAGTCGTAACCCTCGATCAGACTGGA
* * *
33668551 GCTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCCACAAAA-ACGGGCATGCGGGCACTC
1 GCTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAAGA-AGGCATG-GGG-ACTC
* * * * * **
33668615 AGCCGACCGGACAGGCAGAATGCGTAAGTCGAGGATCGACCCGGT-CCCCTCTGCATGCTG-TTG
62 AACCGACCGAAAAGGCAAAATGCGTAAATCGAGGATCGACCCGGTCCCCCTCTGCATGCTGCCAG
* * *
33668678 ATCCTGCTGTCGTAACCCTCGATCTAGTCT-GA
127 -TCCCGCAGTCGTAACCCTCGATC-AGACTGGA
* *
33668710 TCTTAGACTGGGAATGAACTCTGTATGC
1 GCTTAGACT-GGAATGAACTCCGTATGC
33668738 TTAGACTGGA
Statistics
Matches: 155, Mismatches: 26, Indels: 12
0.80 0.13 0.06
Matches are distributed among these distances:
157 1 0.01
158 6 0.04
159 104 0.67
160 44 0.28
ACGTcount: A:0.26, C:0.29, G:0.25, T:0.20
Consensus pattern (157 bp):
GCTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAAGAAGGCATGGGGACTCAACC
GACCGAAAAGGCAAAATGCGTAAATCGAGGATCGACCCGGTCCCCCTCTGCATGCTGCCAGTCCC
GCAGTCGTAACCCTCGATCAGACTGGA
Found at i:33668761 original size:26 final size:26
Alignment explanation
Indices: 33668711--33668763 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
33668701 CTAGTCTGAT
*
33668711 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
33668737 CTTAGACT-GGAGATGAA-TACCGTATG
1 CTTAGACTGGGA-ATGAACT-CCGTATG
33668763 C
1 C
33668764 ATAAGTCAAG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 4 0.17
26 20 0.83
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:33670232 original size:158 final size:158
Alignment explanation
Indices: 33669997--33670722 Score: 685
Period size: 159 Copynumber: 4.6 Consensus size: 158
33669987 AACTCCATAT
* * * *
33669997 GCTTAGACGTGGAATGAATTCTGTATGCCTAAGCCAACCCATGAAATGAGCATGCGGGTGCTCAG
1 GCTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
* * * * * *
33670062 TCGGTCGGAGAGGCAGAATGCACAAGCCAGGGATCGGCACGGTCCCCC-CTGTGTGCTGTCGATC
65 CCGGTCGAAGAGGCAGAATGCGCAAGCC-GGGATCGGCCCGATCCCCCTCTGCGTGCTGTCGATC
* * * *
33670126 CTGCTGCCGCAACCCTCAGTCCGGTCT-GA
129 CTACTGCCACAACCCTCGGTCCGGACTGGA
* * * ** * *
33670155 TCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACAAAATGAGCGTGCGGGCGCTGAA
1 GCTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
* * * *
33670220 CCGGTCGAAGAGGCATAATGCGTAAGTCGAGGATCGGCCCGATCCCCCTCTGCGTGCTGTCGGT-
65 CCGGTCGAAGAGGCAGAATGCGCAAGCCG-GGATCGGCCCGATCCCCCTCTGCGTGCTGTCGATC
* *
33670284 CTCACTGCCACAACCCTCGGT-CTGACTGGG
129 CT-ACTGCCACAACCCTCGGTCCGGACTGGA
* * * * * *
33670314 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCAGGCACTCAG
1 GCTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
* * * * *
33670379 CCGATCAAAGAGGCAGAATGCGCAAGCCGGGGATTGGCCTGATCCCCC-CTTCGTGCTGTCGATC
65 CCGGTCGAAGAGGCAGAATGCGCAAGCC-GGGATCGGCCCGATCCCCCTCTGCGTGCTGTCGATC
* * * **
33670443 CTGCTGGCGCAACCCTCGGTCC-GA-TCCAA
129 CTACTGCCACAACCCTCGGTCCGGACT-GGA
* * * * ** ** * *
33670472 TCTTAGACTAGGAATGAACTTCGTATGCATAAGTCAACCCATGAAACCAGCGTGCTAGTGCTGAG
1 GCTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
* * * * * * *
33670537 CCGGCCGAAGAGGCACATTACGCAAGCTGGGAATCGGCCCGAGCCCCCTCTGCGTGCTGCCGATC
65 CCGGTCGAAGAGGCAGAATGCGCAAGCCGGG-ATCGGCCCGATCCCCCTCTGCGTGCTGTCGATC
*
33670602 CTACTGCCACAACCCTCGGTCC-GACTGGG
129 CTACTGCCACAACCCTCGGTCCGGACTGGA
* * * * *
33670631 GCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCATGAAATGGGTGTGCGGGCGCTCAA
1 GCTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
* *
33670696 CCGGCCGGAGAGGCAGAATGCGCAAGC
65 CCGGTCGAAGAGGCAGAATGCGCAAGC
33670723 TGGGTGTCAT
Statistics
Matches: 450, Mismatches: 103, Indels: 29
0.77 0.18 0.05
Matches are distributed among these distances:
157 7 0.02
158 210 0.47
159 229 0.51
160 4 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (158 bp):
GCTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAGC
CGGTCGAAGAGGCAGAATGCGCAAGCCGGGATCGGCCCGATCCCCCTCTGCGTGCTGTCGATCCT
ACTGCCACAACCCTCGGTCCGGACTGGA
Found at i:33670575 original size:317 final size:317
Alignment explanation
Indices: 33669997--33670722 Score: 949
Period size: 317 Copynumber: 2.3 Consensus size: 317
33669987 AACTCCATAT
* * ** * * *
33669997 GCTTAGACGTGGAATGAATTCTGTATGCCTAAGCCAACCCATGAAATGAGCATGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCGCTCAG
* * *
33670062 TCGGTCGGAGAGGCAGAATGCACAAGCCAGGGATCGGCACGGTCCCCCCTGTGTGCTGTCGATCC
66 CCGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCACGATCCCCCCTGTGTGCTGTCGATCC
* ** *
33670127 TGCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAA
131 TGCTGCCGCAACCCTCAGTCCGATCCAATCTTAGACTAGGAATGAACTCCGTATGCATAAGTCAA
** * * * * *
33670192 CCCACAAAATGAGCGTGCGGGCGCTGAACCGGTCGAAGAGGCATAATGCGTAAGTCGAGGATCGG
196 CCCACAAAACCAGCGTGCGAGCGCTGAACCGGCCGAAGAGGCACAATACGCAAGTCGAGGATCGG
* * * *
33670257 CCCGATCCCCCTCTGCGTGCTGTCGGT-CTCACTGCCACAACCCTCGGTCTGACTGGG
261 CCCGAGCCCCCTCTGCGTGCTGCCGATCCT-ACTGCCACAACCCTCGGTCCGACTGGG
* * * *
33670314 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCAGGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCGCTCAG
* ** * *
33670379 CCGATCAAAGAGGCAGAATGCGCAAGCCGGGGATTGGC-CTGATCCCCCCT-TCGTGCTGTCGAT
66 CCGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCAC-GATCCCCCCTGT-GTGCTGTCGAT
* * *
33670442 CCTGCTGGCGCAACCCTCGGTCCGATCCAATCTTAGACTAGGAATGAACTTCGTATGCATAAGTC
129 CCTGCTGCCGCAACCCTCAGTCCGATCCAATCTTAGACTAGGAATGAACTCCGTATGCATAAGTC
** * * * *
33670507 AACCCATGAAACCAGCGTGCTAGTGCTGAGCCGGCCGAAGAGGCACATTACGCAAG-CTG-GGAA
194 AACCCACAAAACCAGCGTGCGAGCGCTGAACCGGCCGAAGAGGCACAATACGCAAGTC-GAGG-A
33670570 TCGGCCCGAGCCCCCTCTGCGTGCTGCCGATCCTACTGCCACAACCCTCGGTCCGACTGGG
257 TCGGCCCGAGCCCCCTCTGCGTGCTGCCGATCCTACTGCCACAACCCTCGGTCCGACTGGG
* * *
33670631 GCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCATGAAATGGGTGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCGCTCAG
*
33670696 CCGGCCGGAGAGGCAGAATGCGCAAGC
66 CCGGTCGGAGAGGCAGAATGCGCAAGC
33670723 TGGGTGTCAT
Statistics
Matches: 350, Mismatches: 54, Indels: 10
0.85 0.13 0.02
Matches are distributed among these distances:
316 5 0.01
317 343 0.98
318 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (317 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCGCTCAG
CCGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCACGATCCCCCCTGTGTGCTGTCGATCC
TGCTGCCGCAACCCTCAGTCCGATCCAATCTTAGACTAGGAATGAACTCCGTATGCATAAGTCAA
CCCACAAAACCAGCGTGCGAGCGCTGAACCGGCCGAAGAGGCACAATACGCAAGTCGAGGATCGG
CCCGAGCCCCCTCTGCGTGCTGCCGATCCTACTGCCACAACCCTCGGTCCGACTGGG
Found at i:33675623 original size:26 final size:26
Alignment explanation
Indices: 33675582--33675634 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
33675572 CCGGGTCAAT
*
33675582 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
33675608 CTTAGACTGGGTATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
33675634 C
1 C
33675635 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:33676367 original size:26 final size:26
Alignment explanation
Indices: 33676316--33676368 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
33676306 GGCTAAAAAT
**
33676316 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACACCATATG
*
33676342 CTTAGACAT-GGAATGAACACCGTATG
1 CTTAGAC-TGGGAATGAACACCATATG
33676368 C
1 C
33676369 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACCATATG
Found at i:33676716 original size:159 final size:158
Alignment explanation
Indices: 33676341--33676705 Score: 432
Period size: 158 Copynumber: 2.3 Consensus size: 158
33676331 AACTTCATAT
*
33676341 GCTTAGACATGGAATGAACACCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAG
* * *
33676406 TCGACCGAAGAGGCAGAATGCGCAAGCCAGGGATCGGCCTGGTCCCCACTACGTGCTGTCGATCT
66 CCGACCGAAGAGGCAGAATGCGCAAGCCAGGGATCGGCCTGGTCCCCACTACGTGCTGCCGATCC
* * * ** *
33676471 TGCTACCGCAACCCTTGGTTTGGTCCGA
131 CGCTACCACAACCCTCGGTCAGCTCCGA
* * * * *
33676499 TCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCATACGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCA
*** * * * *
33676563 GCCGGTTGAAGAGGCATAATGCGCAAGCCGGGGTTCGG-CTCGGTCCCC-CTTTGCGTGCTGCCG
65 GCCGACCGAAGAGGCAGAATGCGCAAGCCAGGGATCGGCCT-GGTCCCCAC--TACGTGCTGCCG
* *
33676626 ATCCCGCTACCACAACCCTCGGTCCAGCT-GGG
127 ATCCCGCTACCACAACCCTCGGT-CAGCTCCGA
*
33676658 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACG
33676706 GGTTTGCGGG
Statistics
Matches: 173, Mismatches: 28, Indels: 11
0.82 0.13 0.05
Matches are distributed among these distances:
157 4 0.02
158 94 0.54
159 72 0.42
160 3 0.02
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAG
CCGACCGAAGAGGCAGAATGCGCAAGCCAGGGATCGGCCTGGTCCCCACTACGTGCTGCCGATCC
CGCTACCACAACCCTCGGTCAGCTCCGA
Found at i:33676787 original size:159 final size:159
Alignment explanation
Indices: 33676341--33676844 Score: 459
Period size: 159 Copynumber: 3.2 Consensus size: 159
33676331 AACTTCATAT
*
33676341 GCTTAGACATGGAATGAACACCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAG
* * * * * *
33676406 TCGACCGAAGAGGCAGAATGCGCAAGCCAGGGA-TCGGCCTGGTCCCCACTACGTGCTGTCGATC
66 CCGACTGAAGAGGCAAAATGCGCAAGCGA-GGATTCGGCCTGGTCCCCATTGCGTGCTGTCGATC
** * ** *
33676470 TTGCTACCGCAACCCTTGGT-TTGGTCCGA
130 CAGCTACCGCAACCCTCGGTCCAGCTCCGA
* * * * *
33676499 TCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCATACGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCA
** * * * *
33676563 GCCGGTTGAAGAGGCATAATGCGCAAGCCG-GGGTTCGG-CTCGGTCCCCCTTTGCGTGCTGCCG
65 GCCGACTGAAGAGGCAAAATGCGCAAG-CGAGGATTCGGCCT-GGT-CCCCATTGCGTGCTGTCG
* * * *
33676626 ATCCCGCTACCACAACCCTCGGTCCAGCT-GGG
127 ATCCAGCTACCGCAACCCTCGGTCCAGCTCCGA
* * ** * **
33676658 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTTTGCGGGCACTTTG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAG
* * * * *
33676723 CCGACTGGAGAGGTAAAATGCGTAAGCTGAGGATTCGGCCTGGTCCGCC-TTGCATGCTATCGAT
66 CCGACTGAAGAGGCAAAATGCGCAAGC-GAGGATTCGGCCTGGTCC-CCATTGCGTGCTGTCGAT
* * * *
33676787 CCAACTGCCGCAACCCTCGGTCC-GGTCTGA
129 CCAGCTACCGCAACCCTCGGTCCAGCTCCGA
* *
33676817 TCTTAGAC-TGGGAATGAACTCTGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
33676845 TTAAACTGGG
Statistics
Matches: 276, Mismatches: 57, Indels: 25
0.77 0.16 0.07
Matches are distributed among these distances:
157 5 0.02
158 89 0.32
159 165 0.60
160 15 0.05
161 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAG
CCGACTGAAGAGGCAAAATGCGCAAGCGAGGATTCGGCCTGGTCCCCATTGCGTGCTGTCGATCC
AGCTACCGCAACCCTCGGTCCAGCTCCGA
Found at i:33676847 original size:26 final size:26
Alignment explanation
Indices: 33676818--33676870 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
33676808 CCGGTCTGAT
* *
33676818 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
*
33676844 CTTAAACTGGGGATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
33676870 C
1 C
33676871 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:33677546 original size:25 final size:26
Alignment explanation
Indices: 33677518--33677569 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
33677508 CCGATCCGAT
33677518 CTTAGACT-GAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
** *
33677543 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
33677569 C
1 C
33677570 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 8 0.35
26 15 0.65
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:33678848 original size:318 final size:317
Alignment explanation
Indices: 33678262--33679329 Score: 814
Period size: 342 Copynumber: 3.3 Consensus size: 317
33678252 AACTCCGTAT
* *
33678262 GCTTAGATATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * *
33678327 CTGACCGGAGAGGCAGAATGCGCAAGTCAGGGATTAGCCCGATCCTCCCTGCGTGCTGTTGATTC
66 CCGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCAGCCCGATCCTCCCTACGTGCTGTCGATCC
* *** ** * * *
33678392 TACTATTGCAACCCTTGGCCCGGTTTGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAA
131 CACTACCACAACCCTCAGCCCGGTTGGAGCTTAGACTGGGAATGAACTCCGTATGCATAAGCCAA
* * * * * *
33678457 CCCATGAAACGAGCGTGCGGGCACTGAGCCGATCGAAGAGGCATAATGCGCAAGCTGGGGATCGA
196 CCCACGAAACGAGCGTGCGGGCACTCAACCGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGA
*
33678522 CTCGATCCCCTTCTGGGTGCTGTCGGTGCCACTGCCACAACCCTCGGTCTGGCTGGG
261 CCCGATCCCCTTCTGGGTGCTGTCGGTGCCACTGCCACAACCCTCGGTCTGGCTGGG
* *
33678579 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAT
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * *
33678644 CCGGCCGGAGAGGCAGAATGTGCAAGCCGGGGATCAGCCTGGTCC-CACTCTACGTGCTGTCGAT
66 CCGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCAGCCCGATCCTC-C-CTACGTGCTGTCGAT
* * * * *
33678708 CCCGCTACCACAACCCTCAGTCCGGTTGGGGCTTAGACAT-GGAATGAACTCTGTATGCCTAAGC
129 CCCACTACCACAACCCTCAGCCCGGTTGGAGCTTAGAC-TGGGAATGAACTCCGTATGCATAAGC
*
33678772 CAACCCACGAAACGAGCGTGCGGGCACTCAACCGGCC-AGAGAGGCAGAATGCGCAAGCCGGGGA
193 CAACCCACGAAACGAGCGTGCGGGCACTCAACCGACCGA-AGAGGCAGAATGCGCAAGCCGGGGA
** * * * * * * *
33678836 TC-AGCCCGATCCCTCTT-TGCATGCTGTCGAT-CCTGCTGTCGCAACCCTCGGTCCAGTCT-GA
257 TCGA-CCCGATCCC-CTTCTGGGTGCTGTCGGTGCC-ACTGCCACAACCCTCGGT-CTGGCTGGG
* *
33678897 TCTTAGAC-TGGGAATGAACTACGTATGCGTAGACATGGAATGAACTCCGTATGCGTAAGCCAAC
1 GCTTAGACAT-GGAATGAACT-C-----C-----C-T---ATG----CC-TA----A--GCCAAC
* * * ** **
33678961 CCATGAAACGAGCGTGC-GGTGCTCAGCC-AGCCGGAGAGGTAGAATTTGCAAATC-GGGTATC-
39 CCACGAAACGAGCGTGCGGGCGCTCAGCCGA-CCGGAGAGGCAGAATGCGCAAGCCAGGG-ATCA
* * * ** ** ** * *
33679022 GACCCGATCCCCCCTGCGTGCTATCGATCCTGCTACTGCAACCCTCAGTTCGATCT-GATCTTAG
102 G-CCCGATCCTCCCTACGTGCTGTCGATCCCACTACCACAACCCTCAGCCCGGT-TGGAGCTTAG
* * * * * * *
33679086 ACTGCGTATGAACTCCGAATGCATAAGTCAACCCATGAAACGAGCGTGCGGGCACTGAACCGGCC
165 ACTGGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAACCGACC
* * * * * * * * ** *
33679151 GAAGAGGCATAATGCGCAAGCTGGAGATCGACCTGGTCCCCCTCTGCGTGCTATAAGT-CCTGCT
230 GAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCTTCTGGGTGCTGTCGGTGCC-ACT
** *
33679215 GCCACAACCCTTAGTCCGGCTGGG
294 GCCACAACCCTCGGTCTGGCTGGG
* * * *
33679239 GCTTAGACATGGAATGAACTCTCTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * *
33679304 TCGATCAGAGAGGCTGAATGCACAAG
66 CCGACCGGAGAGGCAGAATGCGCAAG
33679330 TTGAGGATCG
Statistics
Matches: 594, Mismatches: 109, Indels: 96
0.74 0.14 0.12
Matches are distributed among these distances:
316 21 0.04
317 128 0.22
318 170 0.29
319 9 0.02
322 2 0.00
323 2 0.00
324 1 0.00
327 3 0.01
329 1 0.00
330 2 0.00
331 1 0.00
333 3 0.01
337 2 0.00
338 2 0.00
341 8 0.01
342 174 0.29
343 43 0.07
344 22 0.04
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.20
Consensus pattern (317 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCAGCCCGATCCTCCCTACGTGCTGTCGATCC
CACTACCACAACCCTCAGCCCGGTTGGAGCTTAGACTGGGAATGAACTCCGTATGCATAAGCCAA
CCCACGAAACGAGCGTGCGGGCACTCAACCGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGA
CCCGATCCCCTTCTGGGTGCTGTCGGTGCCACTGCCACAACCCTCGGTCTGGCTGGG
Found at i:33678881 original size:159 final size:159
Alignment explanation
Indices: 33678262--33678924 Score: 701
Period size: 159 Copynumber: 4.2 Consensus size: 159
33678252 AACTCCGTAT
* *
33678262 GCTTAGATATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * * * * * *
33678327 CTGACCGGAGAGGCAGAATGCGCAAGTCAGGGATTAGCCCGAT-CCTCCCTGCGTGCTGTTGATT
66 CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGATCCCTCTCTGCGTGCTGTCGATC
*** * * * *
33678391 CTACTATTGCAACCCTTGGCCCGGTTTGA
131 CTACTACCACAACCCTCGGTCCGGTTGGG
* * * * *
33678420 TCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTGCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCA
* * * * * *
33678484 GCCGATCGAAGAGGCATAATGCGCAAGCTGGGGATC-GACTCGATCCC-CTTCTGGGTGCTGTCG
65 GCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCAG-CCCGATCCCTC-TCTGCGTGCTGTCG
* * * *
33678547 GTGCC-ACTGCCACAACCCTCGGTCTGGCTGGG
128 AT-CCTACTACCACAACCCTCGGTCCGGTTGGG
* * * *
33678579 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAT
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * * * * *
33678644 CCGGCCGGAGAGGCAGAATGTGCAAGCCGGGGATCAGCCTGGTCCCACTCTACGTGCTGTCGATC
66 CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGATCCCTCTCTGCGTGCTGTCGATC
** *
33678709 CCGCTACCACAACCCTCAGTCCGGTTGGG
131 CTACTACCACAACCCTCGGTCCGGTTGGG
* *
33678738 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * * *
33678803 CCGGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGATCCCTCTTTGCATGCTGTCGATC
66 CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGATCCCTCTCTGCGTGCTGTCGATC
* ** * * *
33678868 CTGCTGTCGCAACCCTCGGTCCAGTCT-GA
131 CTACTACCACAACCCTCGGTCCGGT-TGGG
* *
33678897 TCTTAGAC-TGGGAATGAACTACGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
33678925 GTAGACATGG
Statistics
Matches: 414, Mismatches: 80, Indels: 21
0.80 0.16 0.04
Matches are distributed among these distances:
157 2 0.00
158 92 0.22
159 315 0.76
160 5 0.01
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGATCCCTCTCTGCGTGCTGTCGATC
CTACTACCACAACCCTCGGTCCGGTTGGG
Found at i:33679258 original size:159 final size:156
Alignment explanation
Indices: 33678926--33679296 Score: 358
Period size: 159 Copynumber: 2.4 Consensus size: 156
33678916 TACGTATGCG
* *
33678926 TAGACATGGAATGAACTCCGTATGCGTAAGCCAACCCATGAAACGAGCGTGCGGTGCTCAGCCAG
1 TAGACATGGAATGAACTCCGTATGCATAAGCCAACCCATGAAACGAGCGTGCGG-GCTCAACCAG
* * ** *
33678991 CCGGAGAGGTAGAATTTGCAAATCGGGTATCGACCCGATCCCCCCTGCGTGCTATCGATCCTGCT
65 CCGAAGAGGCAGAATGCGCAAATCGGGTATCGACCCGATCCCCCCTGCGTGCTATAGATCCTGCT
** * * *
33679056 ACTGCAACCCTCAGTTCGATCTGATCT
130 ACCACAACCCTCAGTCCGAGCTGAGCT
* * * *
33679083 TAGAC-TGCGTATGAACTCCGAATGCATAAGTCAACCCATGAAACGAGCGTGCGGGCACTGAACC
1 TAGACATG-GAATGAACTCCGTATGCATAAGCCAACCCATGAAACGAGCGTGCGGG--CTCAACC
* * * * *
33679147 GGCCGAAGAGGCATAATGCGC-AAGCTGGAG-ATCGACCTGGTCCCCCTCTGCGTGCTATA-AGT
63 AGCCGAAGAGGCAGAATGCGCAAATC-GG-GTATCGACCCGATCCCCC-CTGCGTGCTATAGA-T
* * *
33679209 CCTGCTGCCACAACCCTTAGTCCG-GCTGGGGCT
124 CCTGCTACCACAACCCTCAGTCCGAGCT-GAGCT
* * * *
33679242 TAGACATGGAATGAACTCTC-TATGCCTAAGCCAACCCACGAAACGGGCATGCGGG
1 TAGACATGGAATGAACTC-CGTATGCATAAGCCAACCCATGAAACGAGCGTGCGGG
33679297 TGCTCAGTCG
Statistics
Matches: 173, Mismatches: 31, Indels: 18
0.78 0.14 0.08
Matches are distributed among these distances:
156 3 0.02
157 50 0.29
158 39 0.23
159 78 0.45
160 3 0.02
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (156 bp):
TAGACATGGAATGAACTCCGTATGCATAAGCCAACCCATGAAACGAGCGTGCGGGCTCAACCAGC
CGAAGAGGCAGAATGCGCAAATCGGGTATCGACCCGATCCCCCCTGCGTGCTATAGATCCTGCTA
CCACAACCCTCAGTCCGAGCTGAGCT
Found at i:33679803 original size:26 final size:26
Alignment explanation
Indices: 33679766--33679817 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
33679756 TGGTCTGATT
33679766 TTAGACTGGGAATGAACTCCATATGC
1 TTAGACTGGGAATGAACTCCATATGC
*
33679792 TTAGACAT-GGAATGAACTCCGTATGC
1 TTAGAC-TGGGAATGAACTCCATATGC
33679818 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGC
Found at i:33679817 original size:184 final size:184
Alignment explanation
Indices: 33679606--33679968 Score: 498
Period size: 184 Copynumber: 2.0 Consensus size: 184
33679596 TCCAGTTGGG
* *
33679606 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGGAACGAGCGTACGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAA
* * * * * ** *
33679671 CCGATCAG-AGAGGTAGAATGCACAAATC-GGGGATCGACCTGGTCCCCTCTGCATGCTGTCGAT
66 CCG-GCAGAAGAGGCAGAATACAC-AAGCAGGGGATCGACCTGGTCCCCCCCACATGCTATCGAT
* * *
33679734 CCTGCTACCGCAACCCTC-GATCTGGTCTGATTTTAGACTGGGAATGAACTCCATAT
129 CCTGCTACCACAACCCTCAG-TCTGGTCTGATCTTAGACTAGGAATGAACTCCATAT
* **
33679790 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAA
* * *
33679855 TCGGCCGAAGAGGCAGAATACGCAAGCAGGGGATCGACCTGGTCCCCCCCACATGCTATCGATCC
66 CCGGCAGAAGAGGCAGAATACACAAGCAGGGGATCGACCTGGTCCCCCCCACATGCTATCGATCC
*
33679920 TGCTACCACAACGCTCAGTCTGGTCTGATCTTAGACTAGGAATGAACTC
131 TGCTACCACAACCCTCAGTCTGGTCTGATCTTAGACTAGGAATGAACTC
33679969 TGTATGCCTA
Statistics
Matches: 156, Mismatches: 20, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
183 5 0.03
184 150 0.96
185 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.25, T:0.20
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAA
CCGGCAGAAGAGGCAGAATACACAAGCAGGGGATCGACCTGGTCCCCCCCACATGCTATCGATCC
TGCTACCACAACCCTCAGTCTGGTCTGATCTTAGACTAGGAATGAACTCCATAT
Found at i:33680302 original size:26 final size:26
Alignment explanation
Indices: 33680266--33680318 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
33680256 CTAGTCCGAT
* *
33680266 CTTAGATTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
33680292 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
33680318 C
1 C
33680319 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:33681417 original size:159 final size:157
Alignment explanation
Indices: 33681014--33681516 Score: 548
Period size: 159 Copynumber: 3.2 Consensus size: 157
33681004 AACTTCGTAT
*
33681014 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGCGCTCAGC
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGCGCTCAGC
* * *
33681079 CGGTCGGAGAGGAAAAATGCGCAAGCCGAGGATCGGCTCGGTCCCCCCTATGTGCTGTCGATCTT
66 CGGTCGAAGAGGAAAAATGCGCAAGCCGAGGATCGGCTCGGTCCCCCCTACGTGCTGTCGATCCT
* * *
33681144 GCTGCCACAACCCTTGGTCCGATCTGA
131 GCTGCCACAACCCTCGATCCGAGCTGA
* * * * * *
33681171 TCTTAAAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGGAAACGAGCGTGCGGGCGTTG
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCAC-GAAACGAGCGTGC-GGCGCTC
* * * * * *
33681235 AACCGGCCAAAGAGGCATAATGCGCAAGTCGAGGATCGGGC-CGGTCCCCCTCTACGTGCTGTCG
63 AGCCGGTCGAAGAGGAAAAATGCGCAAGCCGAGGATC-GGCTCGGTCCCCC-CTACGTGCTGTCG
* *
33681299 ATCCCGCTGCCACAACCCTCGATCC-AGCTGGG
126 ATCCTGCTGCCACAACCCTCGATCCGAGCT-GA
* * * *
33681331 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTGCAGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGC-GGCGCTCAG
* * * * * * *
33681396 CCGATCGAAGAGGAAGAATGCGCAAGCCGGGGATCGACTCGATCCCCCCTGCGTGCTATCGATCC
65 CCGGTCGAAGAGGAAAAATGCGCAAGCCGAGGATCGGCTCGGTCCCCCCTACGTGCTGTCGATCC
* * **
33681461 TGCTGTCACAACCCTC-AGTCTGCTCTGA
130 TGCTGCCACAACCCTCGA-TCCGAGCTGA
* *
33681489 TCTTAGA-TTGGAAATGAACTCCGTATGC
1 GCTTAGACATGG-AATGAACTCCGTATGC
33681517 TTAGACTGGG
Statistics
Matches: 282, Mismatches: 53, Indels: 21
0.79 0.15 0.06
Matches are distributed among these distances:
156 1 0.00
157 39 0.14
158 68 0.24
159 101 0.36
160 72 0.26
161 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGCGCTCAGC
CGGTCGAAGAGGAAAAATGCGCAAGCCGAGGATCGGCTCGGTCCCCCCTACGTGCTGTCGATCCT
GCTGCCACAACCCTCGATCCGAGCTGA
Found at i:33683986 original size:26 final size:27
Alignment explanation
Indices: 33683938--33683992 Score: 76
Period size: 26 Copynumber: 2.1 Consensus size: 27
33683928 ATCTGATCTT
*
33683938 AGACTGGGAATGAACTTCATATG-CTA
1 AGACTGGGAATGAACTCCATATGCCTA
* *
33683964 AGACTGGGGATGAACTCCGTATGCCTA
1 AGACTGGGAATGAACTCCATATGCCTA
33683991 AG
1 AG
33683993 TCCAGCCATG
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.31, C:0.18, G:0.27, T:0.24
Consensus pattern (27 bp):
AGACTGGGAATGAACTCCATATGCCTA
Found at i:33685038 original size:159 final size:159
Alignment explanation
Indices: 33684682--33685183 Score: 406
Period size: 159 Copynumber: 3.2 Consensus size: 159
33684672 AACTCCGTAT
* **
33684682 GCTTAGACATGGAATGAACTCCATATGCCTAAGACAACCCACGAAATGAGCGTGCGAGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATACCTAAGACAACCCACGAAACAAGCGTGCGAGCGCTCAG
* * * * *
33684747 CCGACTGGAGAGGCAGAATGCACAAGTCGGGGATCGACCCGATCCCCCACTGTGTGCTGTCGATC
66 CCGACTGAAGAGGCAGAATGCACAAGCCAGGGATCGACCCGATCCCCCACTGCGTGCTATCGATC
*
33684812 CTACTGCCACAACCCTCGATCCGGTCTGA
131 CCACTGCCACAACCCTCGATCCGGTCTGA
* * * * * * *
33684841 TCTTAGAC-TGGGAATCAACTCCGTATTCATAAGTCAACCCACGGAACAAGCGTGCG-G-GCATG
1 GCTTAGACAT-GGAATGAACTCCATATACCTAAGACAACCCACGAAACAAGCGTGCGAGCGC-T-
* * * *** ** *
33684903 GAGCCGA-TCGAAGAGGCATAATGCGCAAGCCAGGGATCGGTTCGATCCCCCTTTGCGTGTTATC
63 CAGCCGACT-GAAGAGGCAGAATGCACAAGCCAGGGATCGACCCGATCCCCCACTGCGTGCTATC
* *
33684967 GATCCCGCTGCCACAACCCTCGGTCCGG-CTAGA
127 GATCCCACTGCCACAACCCTCGATCCGGTCT-GA
* * * * ** * * *
33685000 GCTTAGACATGGAATGAACTCCCTATACCTAAGCCAACCGATGAAACGGGTGTGCGGGGGCTCAG
1 GCTTAGACATGGAATGAACTCCATATACCTAAGACAACCCACGAAACAAGCGTGCGAGCGCTCAG
* * * * ** * * * * *
33685065 CCGGCCGAAAAGGCAGAATACGTAAGCCGGGGATCGGCCCGATCCCCC-TTGCGTGCTGTTGATC
66 CCGACTGAAGAGGCAGAATGCACAAGCCAGGGATCGACCCGATCCCCCACTGCGTGCTATCGATC
* * * * **
33685129 CTACTGTCGCAACCCTCGATTCGGTCCAA
131 CCACTGCCACAACCCTCGATCCGGTCTGA
* *
33685158 TCTTAGAC-TGGGAATGAAATCCATAT
1 GCTTAGACAT-GGAATGAACTCCATAT
33685184 GCTTAGACTG
Statistics
Matches: 270, Mismatches: 62, Indels: 23
0.76 0.17 0.06
Matches are distributed among these distances:
157 3 0.01
158 59 0.22
159 203 0.75
160 3 0.01
161 2 0.01
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCATATACCTAAGACAACCCACGAAACAAGCGTGCGAGCGCTCAG
CCGACTGAAGAGGCAGAATGCACAAGCCAGGGATCGACCCGATCCCCCACTGCGTGCTATCGATC
CCACTGCCACAACCCTCGATCCGGTCTGA
Found at i:33685486 original size:355 final size:358
Alignment explanation
Indices: 33684973--33685629 Score: 773
Period size: 355 Copynumber: 1.8 Consensus size: 358
33684963 TATCGATCCC
* *
33684973 GCTGCCACAACCCTCGGTCCGGCTAGAGCTTAGACATGGAATGAACTCCCTATACCTAAGCCAAC
1 GCTGCCACAACCCTCGGTCCGACTAGAGCTTAGACATGGAATGAACTCCCTACACCTAAGCCAAC
* * * * * * * * **
33685038 CGATGAAACGGGTGTGCGGGGGCTCAGCCGGCCGAAAAGGCAGAATACGTAAGCCGGGGATCGGC
66 CCACGAAAAGAGCGTACGGGGGCTCAGCCGACCGAAAAGGCAGAATACGCAAGCCGGGGATCAAC
* * * *
33685103 CCGATCCCCCTTGCGTGCTGTTGATCCTA-C-TG-TCGCAACCCTCGATTCGGTCCAATCTTAGA
131 CCAATCCCCCCTACGTGCTGTCGATCCTACCTTGATCGCAACCCTCGATTCGGTCCAATCTTAGA
* * ** * * *
33685165 CTGGGAATGAAATCCATATGCTTAGAC-TGGGGATGAACTTTGTATGCCTAAGTCAACCCATGAA
196 CTAGGAATGAAATCCATATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAAACAATGAA
*
33685229 ACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCTTAATATTCAAGCCGGGGATTAGCCCGGTCC
260 ACGAGCGTACGGGCGCTCAGCCGACCGGAGAGGCTTAATATTCAAGCCGGGGATTAGCCCGGTCC
33685294 CCCTCTGTGCACTGCCGATCCTGCTGTCGGTCTT
325 CCCTCTGTGCACTGCCGATCCTGCTGTCGGTCTT
* * * * * * * * *
33685328 GCTGCCACAATCCTTGGTCTGACTGGGGCTTAGTCATGGAATGAACTTCGTACGCCTAAGCCAAC
1 GCTGCCACAACCCTCGGTCCGACTAGAGCTTAGACATGGAATGAACTCCCTACACCTAAGCCAAC
* * * * **
33685393 CCACGAAAAGAGCGTACGGGTGCTCAGTCGACCGGAGAGGCAGAATACGCAATTCGGGGATCAAC
66 CCACGAAAAGAGCGTACGGGGGCTCAGCCGACCGAAAAGGCAGAATACGCAAGCCGGGGATCAAC
*
33685458 CCAATCCCCCCTACGTGCTGTCGATCCTACTGCTGGTTTTGCTATCGCAACCCTCGGTTCGGTCC
131 CCAATCCCCCCTACGTGCTGTCGATCCTAC--C-----TTG--ATCGCAACCCTCGATTCGGTCC
* * * *
33685523 GATCTTAGACTAGGAATGAACTCCGTATGCTTAGACATGGAATGAGCTCCGTATGCCTAAGCCAA
187 AATCTTAGACTAGGAATGAAATCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
* * *
33685588 ATAATGAAACGAGTGTACGGGCGCTCAGCCGATCGGAGAGGC
252 ACAATGAAACGAGCGTACGGGCGCTCAGCCGACCGGAGAGGC
33685630 AAAATGCGCA
Statistics
Matches: 242, Mismatches: 47, Indels: 14
0.80 0.16 0.05
Matches are distributed among these distances:
355 128 0.53
358 1 0.00
364 2 0.01
367 110 0.45
368 1 0.00
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.21
Consensus pattern (358 bp):
GCTGCCACAACCCTCGGTCCGACTAGAGCTTAGACATGGAATGAACTCCCTACACCTAAGCCAAC
CCACGAAAAGAGCGTACGGGGGCTCAGCCGACCGAAAAGGCAGAATACGCAAGCCGGGGATCAAC
CCAATCCCCCCTACGTGCTGTCGATCCTACCTTGATCGCAACCCTCGATTCGGTCCAATCTTAGA
CTAGGAATGAAATCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAACAATGAAA
CGAGCGTACGGGCGCTCAGCCGACCGGAGAGGCTTAATATTCAAGCCGGGGATTAGCCCGGTCCC
CCTCTGTGCACTGCCGATCCTGCTGTCGGTCTT
Found at i:33685555 original size:26 final size:26
Alignment explanation
Indices: 33685526--33685578 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33685516 TCGGTCCGAT
33685526 CTTAGAC-TAGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
33685552 CTTAGACATGGAATGAGCTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
33685578 C
1 C
33685579 CTAAGCCAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:33687648 original size:12 final size:12
Alignment explanation
Indices: 33687631--33687665 Score: 61
Period size: 12 Copynumber: 2.9 Consensus size: 12
33687621 GTGCTATCGA
*
33687631 TCCTGTTGCTGG
1 TCCTGTTGCCGG
33687643 TCCTGTTGCCGG
1 TCCTGTTGCCGG
33687655 TCCTGTTGCCG
1 TCCTGTTGCCG
33687666 CAACCCTCGG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.00, C:0.31, G:0.31, T:0.37
Consensus pattern (12 bp):
TCCTGTTGCCGG
Found at i:33687725 original size:26 final size:26
Alignment explanation
Indices: 33687687--33687739 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33687677 CCGATCTGAT
*
33687687 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
33687713 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
33687739 C
1 C
33687740 CTAACCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:33688224 original size:26 final size:26
Alignment explanation
Indices: 33688188--33688238 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
33688178 TTGGTCTGAT
*
33688188 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
33688214 CTTAGACTGGGGATGAGCTCCATAT
1 CTTAGACTGGGAATGAACTCCATAT
33688239 CCCTAAGTTA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:33688947 original size:26 final size:26
Alignment explanation
Indices: 33688909--33688961 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33688899 GGCTCAAAAT
33688909 CTTAGACTGGGAATGAACTCCGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
*
33688935 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGCATG
33688961 C
1 C
33688962 CTATGCTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:33689447 original size:26 final size:26
Alignment explanation
Indices: 33689388--33689448 Score: 65
Period size: 26 Copynumber: 2.4 Consensus size: 26
33689378 CCCTTGGTCT
33689388 AGTTCG-AT-CTTAGACTAGGAGTGA
1 AGTTCGTATGCTTAGACTAGGAGTGA
* * *
33689412 ACTTCATATGCTTAGACTTGG-GATGA
1 AGTTCGTATGCTTAGACTAGGAG-TGA
33689438 AGTTCGTATGC
1 AGTTCGTATGC
33689449 CTAAGTCAAC
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
24 4 0.14
25 3 0.10
26 22 0.76
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.33
Consensus pattern (26 bp):
AGTTCGTATGCTTAGACTAGGAGTGA
Found at i:33690654 original size:26 final size:26
Alignment explanation
Indices: 33690618--33690670 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
33690608 CCAATCCAAT
33690618 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
33690644 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
33690670 C
1 C
33690671 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:33691049 original size:26 final size:26
Alignment explanation
Indices: 33690998--33691050 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
33690988 CCAGTTTGAT
** *
33690998 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACAAGGAATGAACTCCATATG
*
33691024 CTTAGACAAGGAATGAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCATATG
33691050 C
1 C
33691051 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACAAGGAATGAACTCCATATG
Found at i:33691345 original size:158 final size:158
Alignment explanation
Indices: 33691024--33691524 Score: 497
Period size: 158 Copynumber: 3.2 Consensus size: 158
33691014 ACTCTATATG
** * * ** * *
33691024 CTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCCACCA-CTCAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGT-ACAAGAGCTGAA
* * ** * ** * * *
33691088 TCGGCCGGAGAGGCAGAATGCATAAGCCGAAGATTGGCCCGATCCCCCCTACGTGCTATCGATCC
65 CCGGTCGGAGAGGCAGAATGCGCAAGACGGGGATCGGCCCGGTCCCCCCTGCGTGCTATCGATCC
* * *
33691153 TACTGCCGCAACCCTCGGTCTGGTCTGAT
130 TGCTGCCACAACCCTCGATCTGGTCTGAT
* * * *
33691182 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATTAAACGAGCGTACAAGCGCTGAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACAAGAGCTGAAC
* * * * * * *
33691247 TGG-CTGGAGAGGCATAATGCGTAAGAGGGGGATCGGTCCGGTCTCCCTCTGCGTGCTATCGGTC
66 CGGTC-GGAGAGGCAGAATGCGCAAGACGGGGATCGGCCCGGTC-CCCCCTGCGTGCTATCGATC
* **
33691311 CCGCTGCCACAACCCTCGATCTGG-CTGGG
129 CTGCTGCCACAACCCTCGATCTGGTCTGAT
* * * * ** * *
33691340 GTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGTGTACGGGAGCTTAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACAAGAGCTGAA
* * *
33691404 CCGGTCGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGTGTGCTATCGATCC
65 CCGGTCGGAGAGGCAGAATGCGCAAGACGGGGATCGGCCCGGTCCCCCCTGCGTGCTATCGATCC
*
33691469 TGCTACCACAACCCTCGATCTGGTCTGAT
130 TGCTGCCACAACCCTCGATCTGGTCTGAT
* *
33691498 CTGAGATTGGGAATGAACTCCGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
33691525 TTAGACTGGG
Statistics
Matches: 274, Mismatches: 62, Indels: 14
0.78 0.18 0.04
Matches are distributed among these distances:
157 43 0.16
158 192 0.70
159 39 0.14
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.20
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACAAGAGCTGAAC
CGGTCGGAGAGGCAGAATGCGCAAGACGGGGATCGGCCCGGTCCCCCCTGCGTGCTATCGATCCT
GCTGCCACAACCCTCGATCTGGTCTGAT
Found at i:33692039 original size:26 final size:26
Alignment explanation
Indices: 33692010--33692062 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
33692000 CCGGTCTGAT
33692010 CTTAGACTGG-GAATGAACTCCGTATG
1 CTTAGACTGGCG-ATGAACTCCGTATG
33692036 CTTAGACTGGCGATGAACTCCGTATG
1 CTTAGACTGGCGATGAACTCCGTATG
33692062 C
1 C
33692063 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGCGATGAACTCCGTATG
Found at i:33692053 original size:512 final size:506
Alignment explanation
Indices: 33690729--33692132 Score: 1519
Period size: 512 Copynumber: 2.7 Consensus size: 506
33690719 GGCCGGACGA
* * * * * *
33690729 AGAGGCATAATGCGCAAGTCGAGGG-TCAGCCCGATCCTCCTCTGCGTGCTGCCAATCCCGCTGC
1 AGAGGCATAATGCGCAAG-AGGGGGATCGGTCCGGTCCCCCTCTGCGTGCTGCC-ATCCCGCTG-
* * * * * *
33690793 CGATCCTGCTACCACAACCCTCGTTCTGGCTGGGGCTTAGATATGGAATGAACTCCGTAAGCCTA
63 CGATCCCGCTGCCACAACCCTCGATCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTA
* * ** * * * *
33690858 AGTCAACCCATAAAATGAGCGTGCGGGCGCTCAGCGGGCTAGAGAGGCAGAATGCGCAAGCCGAG
128 AGCCAACCCAGAAACGGA-CGTGTGGGAGCTCAGCCGGCCAGAGAGGCAGAATGCGCAAGCC-AG
* * * * * *
33690923 GATTGGCCCAGTCCCCCCCGCGTGCTGTCGATCCTGTTGCTGGTCCTGCTATCGCAACCTTTGAT
191 GATCGGCCCGGT-CCCCCTGCGTGCTATCGAT-C-----CT-G--CTGC--T-GCAACCCTCGAT
* * ** * *
33690988 CCAGTTTGATCTTAGACTGGGAATGAACTCTATATGCTTAGACAAGGAATGAACTCCGTATGCCT
243 CCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC-TGGGATGAACTCCGTATGCCT
* * * * ** *
33691053 AAGCCAACCCACGAAACGAGCGTGCCACCACTCAGTCGGCCGGAGAGGCAGAATGCATAAGCCGA
307 AAGTCAACCCACGAAACGAGCGTG-CAGCACTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGG
* * * *
33691118 AGATTGGCCCGATCCCCCCTACGTGCTATCGATCCTACTGCCGCAACCCTCGGTCTGGTCTGATC
371 GGACTAGCCCGATCCCCCCTACGTGCTATCGATCCTACTACCGCAACCCTCGGTCTGGTCTGATC
* * ** * * *
33691183 TTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATTAAACGAGCGTACAAGCGCTGAACT
436 TTAGACTGGGAATGAACTCAGTATGCCTAAATCAACCCACGAAACAAGCGTACAAGCACTGAACC
33691248 GGCTGG
501 GGCTGG
* *
33691254 AGAGGCATAATGCGTAAGAGGGGGATCGGTCCGGTCTCCCTCTGCGTGCT---AT----C-G-G-
1 AGAGGCATAATGCGCAAGAGGGGGATCGGTCCGGTCCCCCTCTGCGTGCTGCCATCCCGCTGCGA
33691309 TCCCGCTGCCACAACCCTCGATCTGGCTGGGG-TTAGACATGGAATGAACTCCCTATGCCTAAGC
66 TCCCGCTGCCACAACCCTCGATCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGC
* * * * *
33691373 CAACCCATGAAACGG--GTGTACGGGAGCTTAGCCGGTCGGAGAGGTAGAATGCGCAAGCCGGGG
131 CAACCCA-GAAACGGACGTGT--GGGAGCTCAGCCGGCCAGAGAGGCAGAATGCGCAAGCC-AGG
* * ** * *
33691436 ATCGGCCCGGTCCCCCCTGTGTGCTATCGATCCTGCTACCACAACCCTCGATCTGGTCTGATCTG
192 ATCGGCCCGGT-CCCCCTGCGTGCTATCGATCCTGCTGCTGCAACCCTCGATCCGGTCTGATCTT
* *
33691501 AGATTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCAC-
256 AGACTGGGAATGAACTCCGTATGCTTAGACT-GGGATGAACTCCGTATGCCTAAGTCAACCCACG
* * * * * *
33691565 AAATGAGCGTGTCAGCGCTCAACCGATCGGAGAGGTAGAATGCGCAAGCCGGGGACTAGCCCGGT
320 AAACGAGCGTG-CAGCACTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGACTAGCCCGAT
* * *
33691630 CCCCCCTACGTGCTATCGATTCTGCTACTGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAAT
384 CCCCCCTACGTGCTATCGATCCTACTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAAT
* * ** *
33691695 GAACTCAGTATGCCTAAATCAACCCCCGAAACAAGCGTGCGGGCACTGAGCCGG-TCGG
449 GAACTCAGTATGCCTAAATCAACCCACGAAACAAGCGTACAAGCACTGAACCGGCT-GG
** *
33691753 AGAGGCATAATGCGCAAGCTGGGGAT-GGGCTCGGTCCCCCTCTGCGTGCTGCCGATCCCGCTGT
1 AGAGGCATAATGCGCAAGAGGGGGATCGGTC-CGGTCCCCCTCTGCGTGCTGCC-ATCCCGCTG-
* * *
33691817 CGATCCCACTGCCACAACCCTCAATCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTA
63 CGATCCCGCTGCCACAACCCTCGATCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTA
* * *
33691882 AGCCAACCCACGAAACGGACATGTGGGTGCTCAGCCGGCCAGAGAGGCAGAATGTGCAAGCCATG
128 AGCCAACCCA-GAAACGGACGTGTGGGAGCTCAGCCGGCCAGAGAGGCAGAATGCGCAAGCCA-G
* * *
33691947 GATCGGCTCGGTCCCTCTGGCGTGCTATCGATCCTGCTGCTGCAACCCTCGGTCCGGTCTGATCT
191 GATCGGCCCGGTCCCCCT-GCGTGCTATCGATCCTGCTGCTGCAACCCTCGATCCGGTCTGATCT
*
33692012 TAGACTGGGAATGAACTCCGTATGCTTAGACTGGCGATGAACTCCGTATGCCTAAGTCAACCAAC
255 TAGACTGGGAATGAACTCCGTATGCTTAGACTGG-GATGAACTCCGTATGCCTAAGTCAACCCAC
* *
33692077 GAAACGAGCGTGCAGGCACTCAGCCGACCAGAGAGGCAGTATGCGCAAGCCGGGGA
319 GAAACGAGCGTGCA-GCACTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGA
33692133 TCGGATGGCT
Statistics
Matches: 736, Mismatches: 116, Indels: 66
0.80 0.13 0.07
Matches are distributed among these distances:
498 4 0.01
499 195 0.26
500 74 0.10
503 5 0.01
505 1 0.00
506 2 0.00
507 1 0.00
508 1 0.00
510 4 0.01
511 37 0.05
512 285 0.39
513 78 0.11
514 4 0.01
516 1 0.00
517 1 0.00
521 2 0.00
524 4 0.01
525 37 0.05
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (506 bp):
AGAGGCATAATGCGCAAGAGGGGGATCGGTCCGGTCCCCCTCTGCGTGCTGCCATCCCGCTGCGA
TCCCGCTGCCACAACCCTCGATCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGC
CAACCCAGAAACGGACGTGTGGGAGCTCAGCCGGCCAGAGAGGCAGAATGCGCAAGCCAGGATCG
GCCCGGTCCCCCTGCGTGCTATCGATCCTGCTGCTGCAACCCTCGATCCGGTCTGATCTTAGACT
GGGAATGAACTCCGTATGCTTAGACTGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
GCGTGCAGCACTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGACTAGCCCGATCCCCCCT
ACGTGCTATCGATCCTACTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCA
GTATGCCTAAATCAACCCACGAAACAAGCGTACAAGCACTGAACCGGCTGG
Found at i:33692659 original size:11 final size:11
Alignment explanation
Indices: 33692643--33692673 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
33692633 ATTAGGCTCT
33692643 CCGACGATGCC
1 CCGACGATGCC
33692654 CCGACGATGCC
1 CCGACGATGCC
*
33692665 TCGACGATG
1 CCGACGATG
33692674 GTGCCCCGAG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.19, C:0.39, G:0.29, T:0.13
Consensus pattern (11 bp):
CCGACGATGCC
Found at i:33693162 original size:159 final size:160
Alignment explanation
Indices: 33692936--33693427 Score: 402
Period size: 159 Copynumber: 3.0 Consensus size: 160
33692926 TCCTAGATTG
* * * * * * * ** * *
33692936 GGAATGAACTTCGTATGCATAAGTCAACCCACGAAATC-AACGTGCGGGCACTGAGCCAGCCGAA
1 GGAATGAACTCCCTATGCATAAGCCAACCCACGAAA-CGAGCATACAGGTGCTCAGCCGGCCGAA
33693000 GAGGCATAATGCGCAAGCCGAGGATCGAGC-CGGTCCCCCTTTGCGTGCTGTCGGTCCTGCTGCC
65 GAGGCATAATGCGCAAGCCGAGGATCGAGCTCGGTCCCCCTTTGCGTGCTGTCGGTCCTGCTGCC
* *
33693064 ACAACCCTCGGTCTAACTAGGGCTTAGACAT
130 ACAACCCTCGGTCCAGCTAGGGCTTAGACAT
* * * *
33693095 GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATACGGGTGCTCAGCCGGCCGGAG
1 GGAATGAACTCCCTATGCATAAGCCAACCCACGAAACGAGCATACAGGTGCTCAGCCGGCCGAAG
*
33693160 AGGCATAATGCGCAAGCC-AGGGATC-AACTCGGTCCCCCCTGTATGCTGTCGATCCTGCTGCAG
66 AGGCATAATGCGCAAGCCGA-GGATCGAGCTCGGT-CCCCCT-T-TGC-GT-G---CTG-T-C-G
* * * * ** *
33693223 GTCCTGCTGCCACAACCGTCGATCCAGTTCGATCTTAGA-TT
119 GTCCTGCTGCCACAACCCTCGGTCCAGCTAGGGCTTAGACAT
** * * * ** * * *
33693264 GGGAATGAACTCTGTATGCATAAGTCAACCCATGAAATGAGTGTGCAGGTGCTGAGCCGGCCAAA
1 -GGAATGAACTCCCTATGCATAAGCCAACCCACGAAACGAGCATACAGGTGCTCAGCCGGCCGAA
* * ** * ** * * *
33693329 GAGGCATAACGTGCAAGCCGAGGATCG-GCTCGGTCCCCCTCAGAGTGCTACCGATCCCGTTGCC
65 GAGGCATAATGCGCAAGCCGAGGATCGAGCTCGGTCCCCCTTTGCGTGCTGTCGGTCCTGCTGCC
*
33693393 ACAACCCTCGGTCCAGCTGGGGCTTAGACAT
130 ACAACCCTCGGTCCAGCTAGGGCTTAGACAT
33693424 GGAA
1 GGAA
33693428 CCGGGGGTGC
Statistics
Matches: 260, Mismatches: 55, Indels: 36
0.74 0.16 0.10
Matches are distributed among these distances:
158 4 0.02
159 112 0.43
160 8 0.03
161 1 0.00
162 5 0.02
163 2 0.01
164 1 0.00
165 1 0.00
166 2 0.01
167 4 0.02
168 1 0.00
169 8 0.03
170 110 0.42
171 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (160 bp):
GGAATGAACTCCCTATGCATAAGCCAACCCACGAAACGAGCATACAGGTGCTCAGCCGGCCGAAG
AGGCATAATGCGCAAGCCGAGGATCGAGCTCGGTCCCCCTTTGCGTGCTGTCGGTCCTGCTGCCA
CAACCCTCGGTCCAGCTAGGGCTTAGACAT
Found at i:33693570 original size:26 final size:26
Alignment explanation
Indices: 33693541--33693593 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33693531 CTGGTTCGAT
*
33693541 CTTAGACT-GGGAATGAACTCTGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
33693567 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
33693593 C
1 C
33693594 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:33694085 original size:26 final size:26
Alignment explanation
Indices: 33694041--33694093 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
33694031 CCGGTCCAAT
*
33694041 CTTAGCCTGGGAATAAACT-TCGTATG
1 CTTAGACTGGGAATAAACTCT-GTATG
* *
33694067 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATAAACTCTGTATG
33694093 C
1 C
33694094 CTAAGTAAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCTGTATG
Found at i:33694775 original size:26 final size:26
Alignment explanation
Indices: 33694739--33694791 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
33694729 CGGGTCTGAT
33694739 CTTAGACTGGGAAGGAACTCCGTATG
1 CTTAGACTGGGAAGGAACTCCGTATG
* *
33694765 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAAGGAACTCCGTATG
33694791 C
1 C
33694792 CTAAGGTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.21, G:0.30, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAAGGAACTCCGTATG
Found at i:33694928 original size:184 final size:182
Alignment explanation
Indices: 33694597--33694949 Score: 463
Period size: 184 Copynumber: 1.9 Consensus size: 182
33694587 GACATGGAAC
* * *
33694597 GAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTACTGGTCTCAGCCGGCCGAAGAGGCAG
1 GAACTCCCTATGCCTAAGCCAACCCACGAAACGGACGTACAGGGCTCAGCCGGCCGAAGAGGCAG
** * *
33694662 AATGCCAAGCCGGGGATCGGCCTGGTCCCCCCTACGTGCTACCGATCCTACTGTCACAACCCTCG
66 AATGCCAAGAAGGGGATCAGCCTGGTCCCCCCTACGTGCTACCGATCCTACTGCCACAACCCTCG
* * *
33694727 GTCGGGTCTGATCTTAGACTGGGAAGGAACTCCGTATGCTTAGACTGGGGAT
131 GTCCGATCCGATCTTAGACTGGGAAGGAACTCCGTATGCTTAGACTGGGGAT
* ** * * *
33694779 GAACTCCGTATGCCTAAGGTAACCCACGAAACGGACGTGCAGGCGCTCAGCCGGCCGGAGAGGTA
1 GAACTCCCTATGCCTAAGCCAACCCACGAAACGGACGTACAGG-GCTCAGCCGGCCGAAGAGGCA
* ** ** * *
33694844 GAATGCGCAAGAAGGGGATCAGTCTGGTCCCCCCTGTGTGCTGTCGATCCTACTGCCACAAGCTT
65 GAATGC-CAAGAAGGGGATCAGCCTGGTCCCCCCTACGTGCTACCGATCCTACTGCCACAACCCT
* *
33694909 CGGTCCGATCCGATCTTAGACTGGGAATGAACTCTGTATGC
129 CGGTCCGATCCGATCTTAGACTGGGAAGGAACTCCGTATGC
33694950 ATAAGTCAAC
Statistics
Matches: 144, Mismatches: 25, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
182 37 0.26
183 24 0.17
184 83 0.58
ACGTcount: A:0.22, C:0.30, G:0.29, T:0.19
Consensus pattern (182 bp):
GAACTCCCTATGCCTAAGCCAACCCACGAAACGGACGTACAGGGCTCAGCCGGCCGAAGAGGCAG
AATGCCAAGAAGGGGATCAGCCTGGTCCCCCCTACGTGCTACCGATCCTACTGCCACAACCCTCG
GTCCGATCCGATCTTAGACTGGGAAGGAACTCCGTATGCTTAGACTGGGGAT
Found at i:33695000 original size:341 final size:341
Alignment explanation
Indices: 33694377--33695022 Score: 734
Period size: 341 Copynumber: 1.9 Consensus size: 341
33694367 CGTGCTGCTG
* * * * *
33694377 CAACCCTTGGTCTGATCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATTACC
1 CAACCCTCGGTCGGATCTGATCTTAGACTGGGAAGGAACTCCATATGCTTAGACTGGGGATGAAC
* * * * *
33694442 TCCGTATGCCTAAGTCAACCCATGAAACGAGCATGCGAGCGCTGAGCTGGTCGAAGAGGCATAAT
66 TCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGAGCGCTCAGCCGGCCGAAGAGGCAGAAT
* * *
33694507 GCATAAGCCAAGGATCAGCTCAGTCCCCCTCTGCGTGCTGCTGGTCCTGCTGCCACAACCCTCAG
131 GCACAAG-CAAGGATCAGCTCAGTCCCCCTCTGCGTGCTGCTGATCCTACTGCCACAACCCTCAG
* * ** * * ** *
33694572 TTCGGTTGGGGCTTAGACATGGAACGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTAC
195 TCCGATCCGAGCTTAGACATGGAACGAACTCCCTATGCATAAGCCAACCCACGAAACAAGCATAC
* * *
33694637 TGGTCTCAGCCGGCCGAAGAGGCAGAATGC-CAAGCCGGGGATCGGCCTGGTCCCCCCTACGTGC
260 GGGTCTCAGCCGACCGAAGAGGCAGAATGCGCAAGCCGGAGATCGGCCTGGTCCCCCCTACGTGC
33694701 TACCGATCCTACTGTCA
325 TACCGATCCTACTGTCA
* *
33694718 CAACCCTCGGTCGGGTCTGATCTTAGACTGGGAAGGAACTCCGTATGCTTAGACTGGGGATGAAC
1 CAACCCTCGGTCGGATCTGATCTTAGACTGGGAAGGAACTCCATATGCTTAGACTGGGGATGAAC
* * *
33694783 TCCGTATGCCTAAGGT-AACCCACGAAACG-GACGTGC-AGGCGCTCAGCCGGCCGGAGAGGTAG
66 TCCGTATGCCTAA-GTCAACCCACGAAACGAG-CATGCGA-GCGCTCAGCCGGCCGAAGAGGCAG
* * * *
33694845 AATGCGCAAG-AAGGGGATCAG-TCTGGTCCCCC-CTGTGTGCTG-TCGATCCTACTGCCACAAG
128 AATGCACAAGCAA--GGATCAGCTC-AGTCCCCCTCTGCGTGCTGCT-GATCCTACTGCCACAAC
* * * * ** * *
33694906 CTTCGGTCCGATCCGATCTTAGAC-TGGGAATGAACTCTGTATGCATAAGTCAACCCATGAAACA
189 CCTCAGTCCGATCCGAGCTTAGACAT-GGAACGAACTCCCTATGCATAAGCCAACCCACGAAACA
* * *
33694970 AGCATGCGGGTGCTGAGCCGACCGAAGAGGCATAATGCGCAAGCCGGAGATCG
253 AGCATACGGGT-CTCAGCCGACCGAAGAGGCAGAATGCGCAAGCCGGAGATCG
33695023 ACCCGGTCTA
Statistics
Matches: 250, Mismatches: 45, Indels: 19
0.80 0.14 0.06
Matches are distributed among these distances:
339 4 0.02
340 81 0.32
341 150 0.60
342 15 0.06
ACGTcount: A:0.24, C:0.28, G:0.28, T:0.20
Consensus pattern (341 bp):
CAACCCTCGGTCGGATCTGATCTTAGACTGGGAAGGAACTCCATATGCTTAGACTGGGGATGAAC
TCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGAGCGCTCAGCCGGCCGAAGAGGCAGAAT
GCACAAGCAAGGATCAGCTCAGTCCCCCTCTGCGTGCTGCTGATCCTACTGCCACAACCCTCAGT
CCGATCCGAGCTTAGACATGGAACGAACTCCCTATGCATAAGCCAACCCACGAAACAAGCATACG
GGTCTCAGCCGACCGAAGAGGCAGAATGCGCAAGCCGGAGATCGGCCTGGTCCCCCCTACGTGCT
ACCGATCCTACTGTCA
Found at i:33695269 original size:26 final size:26
Alignment explanation
Indices: 33695240--33695292 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33695230 CTGGTTTGAT
*
33695240 CTTAGACT-GGGAATGAACTCTGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
33695266 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
33695292 C
1 C
33695293 CTAAGTCGAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:33695457 original size:26 final size:26
Alignment explanation
Indices: 33695419--33695471 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
33695409 GGCTCAAATT
33695419 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
33695445 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
33695471 C
1 C
33695472 CTAAGCCATC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:33696255 original size:26 final size:26
Alignment explanation
Indices: 33696226--33696278 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
33696216 CCGATCCGAT
33696226 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
33696252 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
33696278 C
1 C
33696279 CTATGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:33696623 original size:26 final size:26
Alignment explanation
Indices: 33696594--33696646 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
33696584 CCGGTCTGAT
33696594 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
33696620 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
33696646 C
1 C
33696647 CTAAGTCAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:33703616 original size:157 final size:156
Alignment explanation
Indices: 33703228--33703621 Score: 436
Period size: 158 Copynumber: 2.5 Consensus size: 156
33703218 TGAGACATGG
* * *
33703228 AATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGATCAGAGAG
1 AATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGAGCGGGCGCTCAGCCGATCGGAGAG
* * * *
33703293 GCAGAATGTGCAAGCCAGGGATTGACCTGGTCCCCCCTGCGTGCTGTCGATCTTGCTACCACAAC
66 GCAGAATGCGCAAGCCAGGGATTAACCTGATCCCCCCTGCGTGCTGTCGATCCTGCTACCACAAC
* * * * *
33703358 CCTCGATCCGGTCTGATCTTAGACTGGG
131 CCTCGATCCGGACTAAGCCTAGAC--GA
* * * * * *
33703386 AATGAACTCTGTATGCATAAGTCAACCCACGAAACGAGCGTA-CGGGTGCTGAGCCGATCGAAGA
1 AATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCG-AGCGGGCGCTCAGCCGATCGGAGA
* * * **
33703450 GGCATAATGCGCAAGCCAGGGA-TAAGCTCGATCCCCTTCTGCGTGCTGTCGATCCTGCTGTCAC
65 GGCAGAATGCGCAAGCCAGGGATTAACCT-GATCCCC-CCTGCGTGCTGTCGATCCTGCTACCAC
33703514 AACCCTCGATCC-GACTAAGGCCTAGAC-A
128 AACCCTCGATCCGGACTAA-GCCTAGACGA
* * * ** *
33703542 ATATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGAGTGGGCGCTCAATCGGTCGGAGA
1 A-ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGAGCGGGCGCTCAGCCGATCGGAGA
33703607 GGCAGAATGCGCAAG
65 GGCAGAATGCGCAAG
33703622 TCAAGATCGA
Statistics
Matches: 194, Mismatches: 36, Indels: 13
0.80 0.15 0.05
Matches are distributed among these distances:
156 2 0.01
157 67 0.35
158 84 0.43
159 41 0.21
ACGTcount: A:0.26, C:0.29, G:0.27, T:0.18
Consensus pattern (156 bp):
AATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGAGCGGGCGCTCAGCCGATCGGAGAG
GCAGAATGCGCAAGCCAGGGATTAACCTGATCCCCCCTGCGTGCTGTCGATCCTGCTACCACAAC
CCTCGATCCGGACTAAGCCTAGACGA
Found at i:33703717 original size:26 final size:26
Alignment explanation
Indices: 33703688--33703740 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
33703678 CCGGTCCAAT
33703688 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* * *
33703714 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
33703740 C
1 C
33703741 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:33704422 original size:159 final size:157
Alignment explanation
Indices: 33704153--33704879 Score: 522
Period size: 159 Copynumber: 4.6 Consensus size: 157
33704143 AGGTAGAATA
* * * * * * * ** *
33704153 CGCAAGTCAGGGATCGACTCGGTACCCCTTCG-TGCTATCGATCCTGCTACCGTAACCATCGGTC
1 CGCAAGTCGGGGATCGACCCGGTCCCCCTTTGCTGCTGTCGGTCCTGCTGCCACAACCCTCGGTC
* * *** * * * * * *
33704217 CGATTTGATTTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACAAAATGAGCGTGCGG
66 CGACTGGGGCTTAGACTGGGAATGAACTCCCTAAGCATAAGCCAACCCACGAAACGAGCATGCGG
* *
33704282 GCGCTGAGCAGGTCGAAGAGGCATAATG
131 GCGCTGAGC-CGACGAAGAGGCATAATG
* * * * *
33704310 CACAAGTCGGGGATCAACCGGGTCCCCCTTTGCATGCTG-CTGGTCCTGCTACCACAAACCTCGG
1 CGCAAGTCGGGGATCGACCCGGTCCCCCTTTGC-TGCTGTC-GGTCCTGCTGCCACAACCCTCGG
*
33704374 TCCGACTGGGGCTTAGACAT-GGAATGAACTCCCTAAGCCA-AAGCCAACCCACGAAACGGGCAT
64 TCCGACTGGGGCTTAGAC-TGGGAATGAACTCCCTAAG-CATAAGCCAACCCACGAAACGAGCAT
* ** * * * *
33704437 GTGGGTACTCAACCGACCAGAGAGGCAGAATG
127 GCGGGCGCTGAGCCGACGA-AGAGGCATAATG
* * * * * * * * *
33704469 CGCAAGTCGAGGATTGGCCCAGTCCCCCCTGTG-TGTTGTCGATCCTGCTGCCGCAACCCTTGGT
1 CGCAAGTCGGGGATCGACCCGGT-CCCCCTTTGCTGCTGTCGGTCCTGCTGCCACAACCCTCGGT
* ** * * * *
33704533 CCAGTCT-GATCTTAGACTGGGAATGAACTTCGTATA-CATAAGTCAACCCACGAAACGAGCGTG
65 CC-GACTGGGGCTTAGACTGGGAATGAACTCCCTA-AGCATAAGCCAACCCACGAAACGAGCATG
33704596 CGGGCGCTGAGCCGACTGAAGAGGCATAATG
128 CGGGCGCTGAGCCGAC-GAAGAGGCATAATG
* * * * *
33704627 CGCAAGCCAGGGATCGACCCGGTCCCCCTTTACGTGCTGTCGGTCCCGCTGCCTCAACCCTCGGT
1 CGCAAGTCGGGGATCGACCCGGTCCCCCTTTGC-TGCTGTCGGTCCTGCTGCCACAACCCTCGGT
* * * * *
33704692 CCGACTGGGGCTTAGACAT-GGAATGAACTTCCTATGCCTAAGCCAACCCACGAAATGGGCATGC
65 CCGACTGGGGCTTAGAC-TGGGAATGAACTCCCTAAGCATAAGCCAACCCACGAAACGAGCATGC
* * ** **
33704756 GGGTGCTCAATCGATCGGGGAGGCA-AATG
129 GGGCGCTGAGCCGA-CGAAGAGGCATAATG
* * * * * ** *
33704785 CGTAAGCCGGGGATCGACTCGGTCCCCC-CTGCGTGCTGTCGATCCTGCTGCTGCAACCCTCGAT
1 CGCAAGTCGGGGATCGACCCGGTCCCCCTTTGC-TGCTGTCGGTCCTGCTGCCACAACCCTCGGT
* * **
33704849 CTGGTCT-GATCTTAGACTGGGAATGAACTCC
65 C-CGACTGGGGCTTAGACTGGGAATGAACTCC
33704880 GTATGCTTAG
Statistics
Matches: 442, Mismatches: 107, Indels: 42
0.75 0.18 0.07
Matches are distributed among these distances:
156 1 0.00
157 84 0.19
158 145 0.33
159 199 0.45
160 13 0.03
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.20
Consensus pattern (157 bp):
CGCAAGTCGGGGATCGACCCGGTCCCCCTTTGCTGCTGTCGGTCCTGCTGCCACAACCCTCGGTC
CGACTGGGGCTTAGACTGGGAATGAACTCCCTAAGCATAAGCCAACCCACGAAACGAGCATGCGG
GCGCTGAGCCGACGAAGAGGCATAATG
Found at i:33704908 original size:25 final size:26
Alignment explanation
Indices: 33704859--33704910 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
33704849 CTGGTCTGAT
*
33704859 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
33704885 CTTAGACTGGG-ATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
33704910 C
1 C
33704911 CTAAGTAAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 14 0.56
26 11 0.44
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:33705184 original size:341 final size:341
Alignment explanation
Indices: 33704543--33705258 Score: 1031
Period size: 341 Copynumber: 2.1 Consensus size: 341
33704533 CCAGTCTGAT
* * * * *
33704543 CTTAGACTGGGAATGAACTTCGTATACATAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAGC
1 CTTAGACTGGG-ATAAACTCCGTATGCCTAAGTAAACCCACGAAACGAGCGTGCGGGCGCTGAGC
**
33704608 CGACTGAAGAGGCATAATGCGCAAGCCAGGGATCGACCCGGTCCCCCTTTACGTGCTGTCGGTCC
65 CGACCAAAGAGGCATAATGCGCAAGCCAGGGATCGACCCGGTCCCCCTTTACGTGCTGTCGGTCC
* * *
33704673 CGCTGCCTCAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTTCCTATGCCTAAGCCAA
130 CGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCAAAGCCAA
* * * * * * *
33704738 CCCACGAAATGGGCATGCGGGTGCTCAATCGATCGGGGAGGCAAATGCGTAAGCCGGGGATCGAC
195 CCCACGAAACGGGCAAGCGGGCGCTCAATCGACCGGAGAGGCAAATGCATAAGCCGGGGAACGAC
* * ** * * *
33704803 TCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGCTGCAACCCTCGATCTGGTCTGATCTTAGACTG
260 CCAGTCCCCCCTGCGTGCTACCGATCCTACTGCCGCAACCCTCGATCTGGTCTGATCTTAGACTA
*
33704868 GGAATGAACTCCGTATG
325 GGAATGAACTCCATATG
*
33704885 CTTAGACTGGGATAAACTCCGTATGCCTAAGTAAACCCACGAAACGAGCGTGCGGGTGCTGAGCC
1 CTTAGACTGGGATAAACTCCGTATGCCTAAGTAAACCCACGAAACGAGCGTGCGGGCGCTGAGCC
* * * * *
33704950 GGCCAAAGAGGCATAATGTGCAAGCCGGGGATCGACCTGGT-CCCCTTCTGCGTGCTGTCGGTCC
66 GACCAAAGAGGCATAATGCGCAAGCCAGGGATCGACCCGGTCCCCCTT-TACGTGCTGTCGGTCC
*
33705014 CGCTGCCACAACCCTCGGTTCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCAAAGCCAA
130 CGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCAAAGCCAA
* * * *
33705079 CCGATGAAACGGGTAAGCGGGCGCTCAGTCGACCGGAGAGGCAAAATGCATAAGCCGGGGAACGA
195 CCCACGAAACGGGCAAGCGGGCGCTCAATCGACCGGAGAGGC-AAATGCATAAGCCGGGGAACGA
* *
33705144 CCCAGTCCCCCCTGCGTGCTACCGATCCTAC-GCCGCAACCCTCGGTCTGGTTTGATCTTAGACT
259 CCCAGTCCCCCCTGCGTGCTACCGATCCTACTGCCGCAACCCTCGATCTGGTCTGATCTTAGACT
33705208 AGGAATGAACTCCATATG
324 AGGAATGAACTCCATATG
*
33705226 CTTAGACTGGGGATCAACTCCGTATGCCTAAGT
1 CTTAGACT-GGGATAAACTCCGTATGCCTAAGT
33705259 CAAATCATGA
Statistics
Matches: 332, Mismatches: 39, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
340 6 0.02
341 246 0.74
342 80 0.24
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (341 bp):
CTTAGACTGGGATAAACTCCGTATGCCTAAGTAAACCCACGAAACGAGCGTGCGGGCGCTGAGCC
GACCAAAGAGGCATAATGCGCAAGCCAGGGATCGACCCGGTCCCCCTTTACGTGCTGTCGGTCCC
GCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCAAAGCCAAC
CCACGAAACGGGCAAGCGGGCGCTCAATCGACCGGAGAGGCAAATGCATAAGCCGGGGAACGACC
CAGTCCCCCCTGCGTGCTACCGATCCTACTGCCGCAACCCTCGATCTGGTCTGATCTTAGACTAG
GAATGAACTCCATATG
Found at i:33705244 original size:26 final size:26
Alignment explanation
Indices: 33705200--33705252 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
33705190 CTGGTTTGAT
*
33705200 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATCAACTCCATATG
* * *
33705226 CTTAGACTGGGGATCAACTCCGTATG
1 CTTAGACTAGGAATCAACTCCATATG
33705252 C
1 C
33705253 CTAAGTCAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATCAACTCCATATG
Found at i:33706262 original size:158 final size:157
Alignment explanation
Indices: 33705959--33706454 Score: 440
Period size: 158 Copynumber: 3.1 Consensus size: 157
33705949 ACTCCGTATG
* * * * *
33705959 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCAGGAAACGATCGTGCGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCCTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * * * *** * * ** * *
33706023 CCGGTCGGAGAGGCAGAATGCGCTAGTTGGGGATCAACCCGGTCCCCCTTGTGTGCTGTCAATCT
65 CAGGCCGAAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGGTCCCCCCTACGTGCTGTCGATCC
* ** **
33706088 TGCTACCACAGGCCTCGGTCTGATCCGAT
130 CGCTGTCACAACCCTCGGTC-GATCCGAT
** * * *
33706117 CTTAGACTGGGAATGAACTCTGTATGCATAAGTC-ACACCAGGAAACGAGCGTGCGGGCACTGAG
1 CTTAGACTGGGAATGAACTCCCTATGCATAAGCCAAC-CCACGAAACGAGCGTGCGGGCACTCAG
* * * * *
33706181 CAGGCCGAAGAGGCA-TATGTGCAAGCCAGGGATCGACCCGGTCCCACTCTACGTGCTTTCGGTC
65 CAGGCCGAAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGGTCCC-CCCTACGTGCTGTCGATC
* * * **
33706245 CCGCTGTCACAACCCTCGGTCCAGCTAGGG
129 CCGCTGTCACAACCCTCGGTCGATC-CGAT
* ** * *
33706275 CTTAAACAAGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCAGC
1 CTTAGACTGGGAATGAACTCCCTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGC
* * * * * *
33706340 CGGTCGAAGAGGCAGAATGCGCAAGCCAGGGATCGGCTCGGTCCCCCCTCCGTGCTGTCGATCCT
66 AGGCCGAAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGGTCCCCCCTACGTGCTGTCGATCCC
* * *
33706405 GCTGTCGCAACCCTCGGTCCGGTCCTAT
131 GCTGTCACAACCCTCGGT-CGATCCGAT
33706433 CTTAGACCTGGGAATGAACTCC
1 CTTAGA-CTGGGAATGAACTCC
33706455 ATCATGCTTA
Statistics
Matches: 264, Mismatches: 66, Indels: 15
0.77 0.19 0.04
Matches are distributed among these distances:
157 28 0.11
158 193 0.73
159 43 0.16
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.19
Consensus pattern (157 bp):
CTTAGACTGGGAATGAACTCCCTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGC
AGGCCGAAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGGTCCCCCCTACGTGCTGTCGATCCC
GCTGTCACAACCCTCGGTCGATCCGAT
Found at i:33707229 original size:171 final size:170
Alignment explanation
Indices: 33706840--33707253 Score: 492
Period size: 171 Copynumber: 2.4 Consensus size: 170
33706830 GGTCCCACTG
* * * *
33706840 CCACAACCCTTGGTCCGGCTGGGCCTT-GAGATGGAATGAACTCCC-TATGCCTAAGCCAACCCA
1 CCACAACCCTCGGTCAGGCTGGGGCTTAGACATGGAATGAAC-CCCGTATGCCTAAGCCAACCCA
*** * * * * ** *
33706903 CGAAATGGGTGTGCGGGCGCTCAGCCGGCCGAAGAGGCAGAATGCACAAGCTGGGGATCAGCCCG
65 CGAAACAAGCGTGCGGGCGCTCAGCCAGCAGAAGAGGCAGAATGCACAAGCCGAAGAGCAGCCCG
* * * *
33706968 GTCCCCCCTGCATTCTGTCGATCCTGCTACTGATGCTACTA
130 GTCCCCCCTGCATGCTGTCGATCCCGCTACCGATCCTACTA
* * * *
33707009 CCACAACACTCGATCAGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAT
1 CCACAACCCTCGGTCAGGCTGGGGCTTAGACATGGAATGAACCCCGTATGCCTAAGCCAACCCAC
* * * * *
33707074 GAAACAAGCGTGTGGGCGCTCAGTCAGCTAGAA-AGGTATAATGCGCAAGCCGAAGAGCAGCCCG
66 GAAACAAGCGTGCGGGCGCTCAGCCAGC-AGAAGAGGCAGAATGCACAAGCCGAAGAGCAGCCCG
* ** *
33707138 GTCCACCTCTGTGTGCTGTCGATCCCGCTACCGATCCTGCTA
130 GTCC-CCCCTGCATGCTGTCGATCCCGCTACCGATCCTACTA
*
33707180 TCACAACCCTCGGTCAGGCTGGGGCTTAGACATGGAATGAACCCCGTATGCCTAAGCCAACCCAC
1 CCACAACCCTCGGTCAGGCTGGGGCTTAGACATGGAATGAACCCCGTATGCCTAAGCCAACCCAC
33707245 GAAACAAGC
66 GAAACAAGC
33707254 ATGCAGGCAC
Statistics
Matches: 205, Mismatches: 36, Indels: 6
0.83 0.15 0.02
Matches are distributed among these distances:
169 24 0.12
170 80 0.39
171 101 0.49
ACGTcount: A:0.25, C:0.31, G:0.26, T:0.18
Consensus pattern (170 bp):
CCACAACCCTCGGTCAGGCTGGGGCTTAGACATGGAATGAACCCCGTATGCCTAAGCCAACCCAC
GAAACAAGCGTGCGGGCGCTCAGCCAGCAGAAGAGGCAGAATGCACAAGCCGAAGAGCAGCCCGG
TCCCCCCTGCATGCTGTCGATCCCGCTACCGATCCTACTA
Found at i:33707398 original size:26 final size:26
Alignment explanation
Indices: 33707362--33707412 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
33707352 ACGGACCAAT
*
33707362 CTTAGTCTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
33707388 CTTAGACTGGGGATGAACTCTGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
33707413 TCCTAAGTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:33707739 original size:923 final size:930
Alignment explanation
Indices: 33706251--33707919 Score: 2432
Period size: 923 Copynumber: 1.8 Consensus size: 930
33706241 GGTCCCGCTG
33706251 TCACAACCCTCGGTCCAGCTAGGGCTTAAACAAGGAATGAACTCCCTATGCCTAAGCCAACCCAC
1 TCACAACCCTCGGTCCAGCTAGGGCTTAAACAAGGAATGAACTCCCTATGCCTAAGCCAACCCAC
** * * * * * **
33706316 GAAACGGGCGTGCGGGCACTCAGCCGGTCGAAGAGGCAGAATGCGCAAGCCAGGGATCGGCTCGG
66 GAAACAAGCATGCAGGCACTCAACCGGCCGAAGAGGCAAAATAAGCAAGCCAGGGATCGGCTCGG
** * * * * *
33706381 TCCCCCCTCCGTGCTGTCGATCCTGCTGTCGCAACCCTCGGTCCGGTCCTATCTTAGACCTGGGA
131 TCCCCCCTCCGTGCTACCAATCCTGCTGTCGCAACCCTCGATACGGACCAATCTTAGACCTGGGA
33706446 ATGAACTCCATCATGCTTAGACTGGGGATGAACCTGTTATGCCTAAGTCAGGCCCACGAAACGAG
196 ATGAACTCCATCATGCTTAGACTGGGGATGAACCTGTTATGCCTAAGTCAGGCCCACGAAACGAG
* * * * *
33706511 CGTGCGGGCCTCCACCGATCTAGAGAGGCAAGGGCTGCGCAAGCCGGGGATCGAACGGGTGGTAC
261 CATGCGGGCCTCAACCGATCCAGAGAGGCAAGGGATGAGCAAGCCGGGGATCGAACGGGTGGTAC
33706576 GGTGGGTTCAAGCACATCTTCATATTTCTGCCCAGCCAATGCCATTTTTATGGCTTGTAAATTCA
326 GGTGGGTTCAAGCACATCTTCATATTTCTGCCCAGCCAATGCCATTTTTATGGCTTGTAAATTCA
* * * * * *
33706641 TACAGTGGTCCCCTAAGCCTTCATGTGAAGTTTCATGGCAGGATGACCCGTTTTCTATTTTTCAT
391 TACAATGGTCCCCTAAGCCTTCATGTAAAGTTTCATGGCAAGACGACCCATTTTCTATTTTTCAC
** * *
33706706 GATTTTTGAAACTTTTTGAGGTATGCCTAAGTCAACCCACGAAACAAGCGTACGAGCGCTGAGCT
456 GATTTTCAAAACTTTTTCAGGTATGCCTAAGTCAACCCACGAAACAAGCGTACGAGCGCTGAGCC
*** * * *
33706771 GGTCGAAGAGGCATAATGCACAAGCCAGGGATCAGCCCGGTCCCCCTCTGTGTACT-GTCGGTCC
521 AACCGAAGAGGCATAATGCACAAGCCAGGGATCAGCCCGGTCCCCCTATGCGTACTACT-GGTCC
** **
33706835 CACTGCCACAACCCTTGGTCCGGCTGGGCCTT-GAGATGGAATGAACTCCCTATGCCTAAGCCAA
585 CACTGCCACAACCCTCAGTCCGGCTGGGCCTTAGAGATGGAATGAACGACCTATGCCTAAGCCAA
* * * *
33706899 CCCACGAAATGGGTGTGCGGGCGCTCAGCCGGCCGAAGAGGCAGAATGCACAAGCTGGGGATCAG
650 CCCACGAAACGGGCGTACGGGCGCTCAACCGGCCGAAGAGGCAGAATGCACAAGCTGGGGATCAG
* * *
33706964 CCCGGTCCCCCCTGCATTCTGTCGATCCTGCTACTGATGCTACTACCACAACACTCGATCAGGCT
715 CCCGATCCCCCCTACATTCTATCGATCCTGCTACTGATGCTACTACCACAACACTCGATCAGGCT
33707029 GGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGTGGGCGCT
780 GGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGTGGGCGCT
33707094 CAGTCAGCTAGAAAGGTATAATGCGCAAGCCGAAGAGCAGCCCGGTCCACCTCTGTGTGCTGTCG
845 CAGTCAGCTAGAAAGGTATAATGCGCAAGCCGAAGAGCAGCCCGGTCCACCTCTGTGTGCTGTCG
33707159 ATCCCGCTACCGATCCTGCTA
910 ATCCCGCTACCGATCCTGCTA
* * *
33707180 TCACAACCCTCGGT-CAGGCTGGGGCTTAGACATGGAATGAAC-CCCGTATGCCTAAGCCAACCC
1 TCACAACCCTCGGTCCA-GCTAGGGCTTAAACAAGGAATGAACTCCC-TATGCCTAAGCCAACCC
* ** *
33707243 ACGAAACAAGCATGCAGGCACTCAACCGGCC-AGAGAGGTAAAATAAGCAAATC-GATGATCGGC
64 ACGAAACAAGCATGCAGGCACTCAACCGGCCGA-AGAGGCAAAATAAGCAAGCCAG-GGATCGGC
* * * *
33707306 TCTGTCCCCCCTGCGTGCTACCAATCTTGCTG-CTGCAACCCTCGATACGGACCAATCTTAG-TC
127 TCGGTCCCCCCTCCGTGCTACCAATCCTGCTGTC-GCAACCCTCGATACGGACCAATCTTAGACC
* * *
33707369 TGGGAATGAACTCCGT-ATGCTTAGACTGGGGATGAACTCTG-TATTCCTAAGTCA-GCCCATGA
191 TGGGAATGAACTCCATCATGCTTAGACTGGGGATGAAC-CTGTTATGCCTAAGTCAGGCCCACGA
*
33707431 AATGAGCATGCGGGCGCTCAACCGA-CCAGAGAGGC-A-GGATGAGCAAGCCGGGGATCGAACGG
255 AACGAGCATGCGGGC-CTCAACCGATCCAGAGAGGCAAGGGATGAGCAAGCCGGGGATCGAACGG
*
33707493 GTGGTA-GGTGGGTTCAAGCACATCTTCATATTTCTGCCCAGCCACTGCCATTTTTATGGCTTGT
319 GTGGTACGGTGGGTTCAAGCACATCTTCATATTTCTGCCCAGCCAATGCCATTTTTATGGCTTGT
* ** *
33707557 AAATTCATACAATGGTCCCCTAAGCCTTTATGTAAAGTTTGGTGGCAAGACGACCCATTTTTTAT
384 AAATTCATACAATGGTCCCCTAAGCCTTCATGTAAAGTTTCATGGCAAGACGACCCATTTTCTAT
* * * *
33707622 TTTTCACGATTTTCAAAACTTTTTCAGGTATGCTTAAGTCAACCCATGAAACGAGCGTACGGGCG
449 TTTTCACGATTTTCAAAACTTTTTCAGGTATGCCTAAGTCAACCCACGAAACAAGCGTACGAGCG
* * *
33707687 CTGAGCCAACCGAAGAGGCATAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCTATGCGTGCTAC
514 CTGAGCCAACCGAAGAGGCATAATGCACAAGCCAGGGATCAGCCCGGTCCCCCTATGCGTACTAC
*
33707752 TGGTCCCATTGCCACAACCCTCAGTCCGGCTGGGCCTTAGAGATGGAATGAACGACCTATGCCTA
579 TGGTCCCACTGCCACAACCCTCAGTCCGGCTGGGCCTTAGAGATGGAATGAACGACCTATGCCTA
* * *
33707817 AGCCAACCCACGAAACGGGCGTACGGGCGCTTAACCGGCCGGAGAGGCAGAATGCGCAAGCTGGG
644 AGCCAACCCACGAAACGGGCGTACGGGCGCTCAACCGGCCGAAGAGGCAGAATGCACAAGCTGGG
**
33707882 GATCAGCCCGATCCCCTTTACATTCTATCGATCCTGCT
709 GATCAGCCCGATCCCCCCTACATTCTATCGATCCTGCT
33707920 GCCTTAACCC
Statistics
Matches: 650, Mismatches: 81, Indels: 23
0.86 0.11 0.03
Matches are distributed among these distances:
923 258 0.40
924 146 0.22
925 1 0.00
926 29 0.04
927 41 0.06
928 27 0.04
929 148 0.23
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.22
Consensus pattern (930 bp):
TCACAACCCTCGGTCCAGCTAGGGCTTAAACAAGGAATGAACTCCCTATGCCTAAGCCAACCCAC
GAAACAAGCATGCAGGCACTCAACCGGCCGAAGAGGCAAAATAAGCAAGCCAGGGATCGGCTCGG
TCCCCCCTCCGTGCTACCAATCCTGCTGTCGCAACCCTCGATACGGACCAATCTTAGACCTGGGA
ATGAACTCCATCATGCTTAGACTGGGGATGAACCTGTTATGCCTAAGTCAGGCCCACGAAACGAG
CATGCGGGCCTCAACCGATCCAGAGAGGCAAGGGATGAGCAAGCCGGGGATCGAACGGGTGGTAC
GGTGGGTTCAAGCACATCTTCATATTTCTGCCCAGCCAATGCCATTTTTATGGCTTGTAAATTCA
TACAATGGTCCCCTAAGCCTTCATGTAAAGTTTCATGGCAAGACGACCCATTTTCTATTTTTCAC
GATTTTCAAAACTTTTTCAGGTATGCCTAAGTCAACCCACGAAACAAGCGTACGAGCGCTGAGCC
AACCGAAGAGGCATAATGCACAAGCCAGGGATCAGCCCGGTCCCCCTATGCGTACTACTGGTCCC
ACTGCCACAACCCTCAGTCCGGCTGGGCCTTAGAGATGGAATGAACGACCTATGCCTAAGCCAAC
CCACGAAACGGGCGTACGGGCGCTCAACCGGCCGAAGAGGCAGAATGCACAAGCTGGGGATCAGC
CCGATCCCCCCTACATTCTATCGATCCTGCTACTGATGCTACTACCACAACACTCGATCAGGCTG
GGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGTGGGCGCTC
AGTCAGCTAGAAAGGTATAATGCGCAAGCCGAAGAGCAGCCCGGTCCACCTCTGTGTGCTGTCGA
TCCCGCTACCGATCCTGCTA
Found at i:33708000 original size:26 final size:26
Alignment explanation
Indices: 33707946--33708000 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 26
33707936 CAGTCTGAAA
* * * *
33707946 TTAGACTGGGAATTAACTCTGTGTGC
1 TTAGACTGGGAATGAACTCCGTATAC
*
33707972 TTAGACTGGGGATGAACTCCGTATAC
1 TTAGACTGGGAATGAACTCCGTATAC
33707998 TTA
1 TTA
33708001 AGTTAACCCA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.16, G:0.25, T:0.33
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATAC
Found at i:33708711 original size:26 final size:26
Alignment explanation
Indices: 33708673--33708723 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
33708663 CTGATCCTAT
*
33708673 CTTAGACTGGGAATGAGCTCCGTATA
1 CTTAGACTGGGAATGAACTCCGTATA
*
33708699 CTTAGACAT-GGAATTAACTCCGTAT
1 CTTAGAC-TGGGAATGAACTCCGTAT
33708724 GCCTAAGCCA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATA
Found at i:33709224 original size:26 final size:26
Alignment explanation
Indices: 33709172--33709224 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
33709162 CTGGTCTGAT
* *
33709172 CTTAGACTGGGAATGAACTCTGCATG
1 CTTAGACTGGAAATGAACTCCGCATG
* *
33709198 CTTAGACTGGAAATGAAGTCCGTATG
1 CTTAGACTGGAAATGAACTCCGCATG
33709224 C
1 C
33709225 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGCATG
Found at i:33709582 original size:26 final size:26
Alignment explanation
Indices: 33709553--33709625 Score: 112
Period size: 26 Copynumber: 2.8 Consensus size: 26
33709543 CCGATCCGAT
33709553 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
* *
33709579 CTTAGACATGGAATGAACTCTGTATT
1 CTTAGACATGGAATGAACTCCGTATG
33709605 CTTAGACATGGAATGAACTCC
1 CTTAGACATGGAATGAACTCC
33709626 CACAAAACGA
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
26 42 0.98
27 1 0.02
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:33710140 original size:26 final size:26
Alignment explanation
Indices: 33710088--33710140 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
33710078 TTGATCCGAT
***
33710088 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCAAATG
* *
33710114 CTTAGATTGGGGATGAACTCCAAATG
1 CTTAGACTGGGAATGAACTCCAAATG
33710140 C
1 C
33710141 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCAAATG
Found at i:33711503 original size:26 final size:26
Alignment explanation
Indices: 33711474--33711526 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33711464 CTAGTCCGAT
33711474 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
33711500 CTTAGACATGGACTGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
33711526 C
1 C
33711527 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:33711846 original size:26 final size:26
Alignment explanation
Indices: 33711817--33711869 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
33711807 CTGATCCGAT
33711817 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
33711843 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
33711869 C
1 C
33711870 CTAAGTGAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:33712935 original size:26 final size:26
Alignment explanation
Indices: 33712906--33712975 Score: 122
Period size: 26 Copynumber: 2.7 Consensus size: 26
33712896 TCTTAGATTG
*
33712906 GGAATGAACTCTGTATGCTTAGGCAT
1 GGAATGAACTCCGTATGCTTAGGCAT
*
33712932 GGAATAAACTCCGTATGCTTAGGCAT
1 GGAATGAACTCCGTATGCTTAGGCAT
33712958 GGAATGAACTCCGTATGC
1 GGAATGAACTCCGTATGC
33712976 CTAAGCGAAC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 41 1.00
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.27
Consensus pattern (26 bp):
GGAATGAACTCCGTATGCTTAGGCAT
Found at i:33713329 original size:159 final size:156
Alignment explanation
Indices: 33712948--33713392 Score: 462
Period size: 159 Copynumber: 2.8 Consensus size: 156
33712938 AACTCCGTAT
* * * * *
33712948 GCTTAGGCATGGAATGAACTCCGTATGCCTAAGCGAACCCATGAAACGAGTGTACGGGCATTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACG-GGGTACGGGCACTCAG
* * * * * *
33713013 CCGATCGGAGAGGCAGAATGCGCAAGCTGGGGATCAACCCAGTCCCCCCTACGTGATGTTGATAC
65 CCGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCAACCGA-TCCCCCCTACGTGCTGTCGATAC
* * * * *
33713078 TACTGCCGCAACCCTCGGTCCGATCTGA
129 CACTACCACAACCCTCAGTCCGAGCTGA
* * * * *
33713106 TCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGGATACGGGCGCTCA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACG-GGGTACGGGCACTCA
* * * * * * * *
33713170 GCCGACCGAAAAGGCATAATGCGCAAGCCGTGGATCATCTTGATCCCCCTCTGCGTGCTGTCGGT
64 GCCGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCAAC-CGATCCCCC-CTACGTGCTGTCGAT
* *
33713235 CCCACTACCACAACCCTCAGT-CTAGCTAGA
127 ACCACTACCACAACCCTCAGTCCGAGCT-GA
* **
33713265 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGTGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGG-GTACGGGCACTCAG
* **
33713330 CCGACCGGAGAGGCAGAATGCGTAAGCCGAGGATCGGCCCGATCCCCCCTACGTGCTGTCGAT
65 CCGACCGGAGAGGCAGAATGCGCAAGCCGAGGATC-AACCGATCCCCCCTACGTGCTGTCGAT
33713393 CCTATTGTCG
Statistics
Matches: 232, Mismatches: 48, Indels: 14
0.79 0.16 0.05
Matches are distributed among these distances:
157 1 0.00
158 109 0.47
159 120 0.52
160 2 0.01
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.18
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGGGTACGGGCACTCAGC
CGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCAACCGATCCCCCCTACGTGCTGTCGATACCA
CTACCACAACCCTCAGTCCGAGCTGA
Found at i:33713460 original size:26 final size:26
Alignment explanation
Indices: 33713424--33713474 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
33713414 CCGATCTGAT
*
33713424 CTTAGATTGGGAAAGAACTCCATATG
1 CTTAGACTGGGAAAGAACTCCATATG
* *
33713450 CTTAGACTGGGGATGAACTCCATAT
1 CTTAGACTGGGAAAGAACTCCATAT
33713475 CCCTAAATCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCATATG
Found at i:33713574 original size:184 final size:184
Alignment explanation
Indices: 33713265--33713634 Score: 431
Period size: 184 Copynumber: 2.0 Consensus size: 184
33713255 TCTAGCTAGA
* * * * * * *
33713265 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGTGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCATATCCCTAAACCAACCCACGAAACGAGCATGCGAGCACTCAG
* * * *
33713330 CCGACCGGAGAGGCAGAATGCGTAAGCCGAGGATCGGCCCGATCCCCCCTACGTGCTGTCGATCC
66 CCGACCAGAGAGGCAGAATGCGCAAGCCGAGGACCGACCCGATCCCCCCTACGTGCTGTCGATCC
* ** *
33713395 TATTG-TCGCAACCCTCGATCCGATCTGATCTTAGATTGGGAAAGAACTCCATAT
131 TACTGCT-GCAACCCTCGATCCGATCCAATCTTAGACTGGGAAAGAACTCCATAT
* * * *
33713449 GCTTAGAC-TGGGGATGAACTCCATATCCCTAAATCAACCCATGAAACGAGCATGCGAGCGCTCA
1 GCTTAGACAT-GGAATGAACTCCATATCCCTAAACCAACCCACGAAACGAGCATGCGAGCACTCA
* * * * **
33713513 GTCGACCAGAGAGGCAG-ATGTGCAAGCCGGGGACCGACTCGATCCCCCTCTGTGTGCTGTCGAT
65 GCCGACCAGAGAGGCAGAATGCGCAAGCCGAGGACCGACCCGATCCCCC-CTACGTGCTGTCGAT
* * * *
33713577 CCTGCTGCTGCAACCCTCGGTCTGATCCAATCTTAGACTGGGAATGAACTCCATAT
129 CCTACTGCTGCAACCCTCGATCCGATCCAATCTTAGACTGGGAAAGAACTCCATAT
33713633 GC
1 GC
33713635 CTAAGCCAAC
Statistics
Matches: 154, Mismatches: 29, Indels: 6
0.81 0.15 0.03
Matches are distributed among these distances:
183 26 0.17
184 127 0.82
185 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.25, T:0.20
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCATATCCCTAAACCAACCCACGAAACGAGCATGCGAGCACTCAG
CCGACCAGAGAGGCAGAATGCGCAAGCCGAGGACCGACCCGATCCCCCCTACGTGCTGTCGATCC
TACTGCTGCAACCCTCGATCCGATCCAATCTTAGACTGGGAAAGAACTCCATAT
Found at i:33713911 original size:501 final size:500
Alignment explanation
Indices: 33713080--33714029 Score: 1195
Period size: 501 Copynumber: 1.9 Consensus size: 500
33713070 GTTGATACTA
** * *
33713080 CTGCCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACC
1 CTGCCGCAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCATATGCATAAGCCAACC
* * * * *
33713145 CACGAAACGAGGATACGGGCGCTCAGCCGACCGAAAAGGCATAATGCGCAAGCCGTGGATCATCT
66 CACGAAACGAGCATACGGGCGCTCAGCAGACCGAAAAGGCATAATACGCAAGCAGTGGATCATCC
* * * *
33713210 TGATCCCCCTCTGCGTGCTGTCGGTCCCACTACCACAACCCTCAGTCTAGCTAGAGCTTAGACAT
131 CGATCCCCCTCTGCATGCTGTCGGTCCCACTACCACAACCCTCAGTCCAACTAGAGCTTAGACAT
* ** * *
33713275 GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGTGGGCACTCAGCCGACCGGAG
196 GGAATGAACTCCCTATGCCTAAGCCAACACACGAAACGGGCGTGCAGGCACTCAGCCAACCGGAC
* * * * * **
33713340 AGGCAGAATGCGTAAGCCGAGGATCGGCCCGATCCCCCCTACGTGCTGTCGATCCTATTGTCGCA
261 AGGCAGAATGCGTAAGCAGAGGATCGACCCGATCCCCCCTACATGCTGCCGATCCTACTACCGCA
* * * *
33713405 ACCCTCGATCCGATCTGATCTTAGATTGGGAAAGAACTCCATATGCTTAGACTGGGGATGAACTC
326 ACCCTCGATCCGATCCGATCTTAGAATGGGAAAGAACTCCATATACTTAGACTAGGGATGAACTC
* *
33713470 CATATCCCTAAATCAACCCATGAAACGAGCATGCGAGCGCTCAGTCGACCAGAGAGGCAGATGTG
391 C-TATCCCTAAATCAACCCATGAAACAAGCATGCGAGCGCTCAGTCGACCAGAAAGGCAGATGTG
33713535 CAAGCCGGGGACCGACTCGATCCCCCTCTGTGTGCTGTCGATCCTG
455 CAAGCCGGGGACCGACTCGATCCCCCTCTGTGTGCTGTCGATCCTG
* * *
33713581 CTGCTGCAACCCTCGGTCTGATCCAATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACC
1 CTGCCGCAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCATATGCATAAGCCAACC
* * * * * * * *
33713646 CACGAAATGAGCATGCGGGCTCTGAGCTAG-TCGGAGAGGCATAATATGCAAGCTAG-GGATCGA
66 CACGAAACGAGCATACGGGCGCTCAGC-AGACCGAAAAGGCATAATACGCAAGC-AGTGGATC-A
* * * * * *
33713709 -CCCGATCCCCCTCTGCATGCTGTCGGTCCCGCTGCCACAACCCTCTGTCCAACTGGGGCTTAGC
128 TCCCGATCCCCCTCTGCATGCTGTCGGTCCCACTACCACAACCCTCAGTCCAACTAGAGCTTAGA
* * * * * *
33713773 CATGGGATGAACTCCCTATGCCTAAGCCAACACATGAAACGGGTGTGCAGGCGCTCAGCTAATCG
193 CATGGAATGAACTCCCTATGCCTAAGCCAACACACGAAACGGGCGTGCAGGCACTCAGCCAACCG
** * * * * * *
33713838 GACAGGCAGAATGCGTAAGCAGAGGATCGACTTGGTCCCTCTTGCATGCTGCCGATCTTGCTACC
258 GACAGGCAGAATGCGTAAGCAGAGGATCGACCCGATCCCCCCTACATGCTGCCGATCCTACTACC
* * * * *
33713903 GTAACCCTCGATCTGATCCGATCTTAGAATGGGAATGAACTTCATATATTTAGACTAGGGATGAA
323 GCAACCCTCGATCCGATCCGATCTTAGAATGGGAAAGAACTCCATATACTTAGACTAGGGATGAA
* * * * *
33713968 CTCCTATGCCTAAGTCAACCCATGAAACAAGCGTGGGAGCTCTCAGTCGACCAGAAAGGCAG
388 CTCCTATCCCTAAATCAACCCATGAAACAAGCATGCGAGCGCTCAGTCGACCAGAAAGGCAG
33714030 GATACGCAAG
Statistics
Matches: 374, Mismatches: 72, Indels: 7
0.83 0.16 0.02
Matches are distributed among these distances:
500 51 0.14
501 320 0.86
502 3 0.01
ACGTcount: A:0.25, C:0.29, G:0.25, T:0.20
Consensus pattern (500 bp):
CTGCCGCAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCATATGCATAAGCCAACC
CACGAAACGAGCATACGGGCGCTCAGCAGACCGAAAAGGCATAATACGCAAGCAGTGGATCATCC
CGATCCCCCTCTGCATGCTGTCGGTCCCACTACCACAACCCTCAGTCCAACTAGAGCTTAGACAT
GGAATGAACTCCCTATGCCTAAGCCAACACACGAAACGGGCGTGCAGGCACTCAGCCAACCGGAC
AGGCAGAATGCGTAAGCAGAGGATCGACCCGATCCCCCCTACATGCTGCCGATCCTACTACCGCA
ACCCTCGATCCGATCCGATCTTAGAATGGGAAAGAACTCCATATACTTAGACTAGGGATGAACTC
CTATCCCTAAATCAACCCATGAAACAAGCATGCGAGCGCTCAGTCGACCAGAAAGGCAGATGTGC
AAGCCGGGGACCGACTCGATCCCCCTCTGTGTGCTGTCGATCCTG
Found at i:33715109 original size:158 final size:159
Alignment explanation
Indices: 33714833--33715202 Score: 367
Period size: 158 Copynumber: 2.3 Consensus size: 159
33714823 CCCTCGGTCC
* * * ** * *
33714833 GGTCTGATCTTAGACAT-GGAATGAACTCCGTATACCTAAGCCAGCCTACGAAATGAGCGTGTGG
1 GGTCTGATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCATGCGG
* * * *
33714897 TCGCTCAGTCAGCCGGACAAGCAGAATGCGTAAGCCAGGGATCAGCCCTGTCCCCC-CTGCATGC
65 TCGCTCAGCCAACCGGACAAGCAGAATGCGCAAGCCAAGGATCAGCCCTGTCCCCCTCTGCATGC
* ***
33714961 TGTCGATCCTGCTGTGGCAACCCTTAG-TCT
130 TGTCGATCCCGCTGCCACAA-CCTTAGATCT
* *
33714991 GGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACAAGCATGCGAG
1 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCATGCG-G
* * * * * * *
33715056 -CGCTGAGCCAACCGGAGAGGCATAATGCGCAAGCCAAGGAT-TGGCCTGGTCCCCCTCTGCGTG
65 TCGCTCAGCCAACCGGACAAGCAGAATGCGCAAGCCAAGGATCAGCCCT-GTCCCCCTCTGCATG
* *
33715119 CTGTCGGTCCCGCTGCCACAACCTTCGATCT
129 CTGTCGATCCCGCTGCCACAACCTTAGATCT
** * *
33715150 GG-CTGGGGCTTAGAC-GTGGAATGAAGTCCCTATGCCTAAGCCAACCCACGAAA
1 GGTCT-GATCTTAGACTG-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA
33715203 TGGGAGTGGA
Statistics
Matches: 173, Mismatches: 32, Indels: 13
0.79 0.15 0.06
Matches are distributed among these distances:
157 5 0.03
158 100 0.58
159 68 0.39
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (159 bp):
GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCATGCGGT
CGCTCAGCCAACCGGACAAGCAGAATGCGCAAGCCAAGGATCAGCCCTGTCCCCCTCTGCATGCT
GTCGATCCCGCTGCCACAACCTTAGATCT
Found at i:33715351 original size:26 final size:26
Alignment explanation
Indices: 33715315--33715367 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
33715305 CCGATCTAAT
33715315 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
33715341 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
33715367 C
1 C
33715368 CAAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:33715594 original size:158 final size:155
Alignment explanation
Indices: 33715406--33715841 Score: 437
Period size: 159 Copynumber: 2.8 Consensus size: 155
33715396 GGCGCTCAGT
* ** * * *
33715406 CGACCGGAGAGGCATAATATGCAAGCCGAGGATAGGCCAGTTCCCCCCTGCGTGCTATCGATCCT
1 CGACCAGAGAGGCATAATACACAAGCCGAGGATCGGCC-GGTCCCCCCTGCGTGCTATCGATCCA
*
33715471 GCTGTCGCAACCCTCAGTCCAATCCGATCTTAGACTAGGAATGAACTCTGTATGCCTAAG-TCAA
65 GCTGTCGCAACCCTC-GTCC-ATCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCT-AA
* * * *
33715535 CCCATGAAATTAGCGTGCGGGTGTTGAAC
127 CCCATGAAATGAGCGTGAGGGCGTTCAAC
* * * * *
33715564 CGGCCAGAGAGGCATAATGCACAAGCCGAGGATCGACCCGGTCCCCCTCTGCGTGTTGTCGATCC
1 CGACCAGAGAGGCATAATACACAAGCCGAGGATCG-GCCGGTCCCCC-CTGCGTGCTATCGATCC
* * * * ** *
33715629 CGCTGCCACAACCCTCGGTCCGA-CTGGGGCTTAGAC-ATGGAATGAACTCCCTATGCCTAAGCT
64 AGCTGTCGCAACCCTC-GTCC-ATC-CGATCTTAGACTA-GGAATGAACTCCGTATGCCTAAGCT
* *
33715692 AACCCATGAAATGGGCGTGAGGGCGTTCAGC
125 AACCCATGAAATGAGCGTGAGGGCGTTCAAC
* * * * * * * *
33715723 CGACCGGAGAGGTAGAATACAAAAGCCAAGGATCGGCTCGGTCCCCCCTGCATGCTACCAATCCA
1 CGACCAGAGAGGCATAATACACAAGCCGAGGATCGGC-CGGTCCCCCCTGCGTGCTATCGATCCA
*
33715788 GCTGTCGCAACCCTCGATCCATCCGATCTTAGACTGGGAATGAACTCCGTATGC
65 GCTGTCGCAACCCTCG-TCCATCCGATCTTAGACTAGGAATGAACTCCGTATGC
33715842 TTAGACTGGG
Statistics
Matches: 222, Mismatches: 47, Indels: 19
0.77 0.16 0.07
Matches are distributed among these distances:
157 27 0.12
158 68 0.31
159 126 0.57
160 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (155 bp):
CGACCAGAGAGGCATAATACACAAGCCGAGGATCGGCCGGTCCCCCCTGCGTGCTATCGATCCAG
CTGTCGCAACCCTCGTCCATCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCTAACCCA
TGAAATGAGCGTGAGGGCGTTCAAC
Found at i:33715819 original size:500 final size:500
Alignment explanation
Indices: 33714947--33715886 Score: 1256
Period size: 500 Copynumber: 1.9 Consensus size: 500
33714937 ATCAGCCCTG
* * * *** * *
33714947 TCCCCCCTGCATGCTGTCGATCCTGCTGTGGCAACCCTTAGTCTGGTCTGATCTTAGACTGGGAA
1 TCCCCCCTGCATGCTATCGATCCTGCTGTCGCAACCCTCAGTCCAATCCGATCTTAGACTAGGAA
* *
33715012 TGAACTTCGTATGCCTAAGTCAACCCACGAAACAAGCATGCGAGCGCTGAGCCAACCGGAGAGGC
66 TGAACTTCGTATGCCTAAGTCAACCCACGAAACAAGCATGCGAGCGCTGAACCAACCAGAGAGGC
* * * * *
33715077 ATAATGCGCAAGCCAAGGATTGGCCTGGTCCCCCTCTGCGTGCTGTCGGTCCCGCTGCCACAACC
131 ATAATGCACAAGCCAAGGATCGACCCGGTCCCCCTCTGCGTGCTGTCGATCCCGCTGCCACAACC
* * * * *
33715142 TTCGATCTGGCTGGGGCTTAGACGTGGAATGAAGTCCCTATGCCTAAGCCAACCCACGAAATGGG
196 CTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGG
** * * * **
33715207 AGTGGAGCACTCAGCCGATTGGAGAGGCAAAATGCACAAGTCGGGGATCGACTCGATCCCCCCCG
261 AGTGGAGCACTCAGCCGACCGGAGAGGCAAAATACAAAAGCCAAGGATCGACTCGATCCCCCCCG
* ** * * *
33715272 CGTGCTGTCGATCCCGCTACTGCAAACCTCGATCCGATCTAATCTTAGACTGGGAATGAACTCCA
326 CATGCTACCAATCCAGCTACTGCAAACCTCGATCCGATCCAATCTTAGACTGGGAATGAACTCCA
*
33715337 TATGCTTAGACTGGGGATGAACTCCATATGCCAAAGTCAACCCATGAAACGTGCACACAGGCGCT
391 TATGCTTAGACTGGGGATGAACTCCATATGCCAAAGTCAACCCACGAAACGTGCACACAGGCGCT
33715402 CAGTCGACCGGAGAGGCATAATATGCAAGCCGAGGATAGGCCAGT
456 CAGTCGACCGGAGAGGCATAATATGCAAGCCGAGGATAGGCCAGT
*
33715447 TCCCCCCTGCGTGCTATCGATCCTGCTGTCGCAACCCTCAGTCCAATCCGATCTTAGACTAGGAA
1 TCCCCCCTGCATGCTATCGATCCTGCTGTCGCAACCCTCAGTCCAATCCGATCTTAGACTAGGAA
* ** * * * * **
33715512 TGAAC-TCTGTATGCCTAAGTCAACCCATGAAATTAGCGTGCGGGTGTTGAACCGGCCAGAGAGG
66 TGAACTTC-GTATGCCTAAGTCAACCCACGAAACAAGCATGCGAGCGCTGAACCAACCAGAGAGG
* *
33715576 CATAATGCACAAGCCGAGGATCGACCCGGTCCCCCTCTGCGTGTTGTCGATCCCGCTGCCACAAC
130 CATAATGCACAAGCCAAGGATCGACCCGGTCCCCCTCTGCGTGCTGTCGATCCCGCTGCCACAAC
* * *
33715641 CCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCTAACCCATGAAATGG
195 CCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGG
* * ** * * * *
33715706 GCGTGAGGGCGTTCAGCCGACCGGAGAGGTAGAATACAAAAGCCAAGGATCGGCTCGGTCCCCCC
260 GAGTG-GAGCACTCAGCCGACCGGAGAGGCAAAATACAAAAGCCAAGGATCGACTCGATCCCCCC
* * * *
33715771 TGCATGCTACCAATCCAGCT-GTCGCAACCCTCGATCC-ATCCGATCTTAGACTGGGAATGAACT
324 CGCATGCTACCAATCCAGCTACT-GCAAACCTCGATCCGATCCAATCTTAGACTGGGAATGAACT
* * *
33715834 CCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
388 CCATATGCTTAGACTGGGGATGAACTCCATATGCCAAAGTCAACCCACGAAAC
33715887 TAGCGTACGG
Statistics
Matches: 373, Mismatches: 64, Indels: 6
0.84 0.14 0.01
Matches are distributed among these distances:
499 2 0.01
500 299 0.80
501 72 0.19
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.20
Consensus pattern (500 bp):
TCCCCCCTGCATGCTATCGATCCTGCTGTCGCAACCCTCAGTCCAATCCGATCTTAGACTAGGAA
TGAACTTCGTATGCCTAAGTCAACCCACGAAACAAGCATGCGAGCGCTGAACCAACCAGAGAGGC
ATAATGCACAAGCCAAGGATCGACCCGGTCCCCCTCTGCGTGCTGTCGATCCCGCTGCCACAACC
CTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGG
AGTGGAGCACTCAGCCGACCGGAGAGGCAAAATACAAAAGCCAAGGATCGACTCGATCCCCCCCG
CATGCTACCAATCCAGCTACTGCAAACCTCGATCCGATCCAATCTTAGACTGGGAATGAACTCCA
TATGCTTAGACTGGGGATGAACTCCATATGCCAAAGTCAACCCACGAAACGTGCACACAGGCGCT
CAGTCGACCGGAGAGGCATAATATGCAAGCCGAGGATAGGCCAGT
Found at i:33715844 original size:26 final size:26
Alignment explanation
Indices: 33715815--33715867 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
33715805 TCCATCCGAT
33715815 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
33715841 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
33715867 C
1 C
33715868 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:33715902 original size:500 final size:498
Alignment explanation
Indices: 33714853--33720539 Score: 2754
Period size: 505 Copynumber: 11.1 Consensus size: 498
33714843 TAGACATGGA
* * * * ** * *
33714853 ATGAACTCCGTATACCTAAGCCAGCCTACGAAA-TGAGCGTGTGGTCGCTCAGTC-AGCCGGACA
1 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACT-AGCGTACGGGCGCTCAGTCGA-CCGGAGA
* * * * * * * *
33714916 AGCAGAATGCGTAAGCC-AGGGATCAGCCCTGTCCCCCCTGCATGCTGTCGATCCTGCTGTGGCA
64 GGCATAATACGCAAGCCGA-GGAT-AGACCAGTCCCCCCTGCGTGCTGTCGATCCTGCTGTCGCA
* * * * *
33714980 ACCCTTAGTCTGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAAC
127 ACCCTCAGTCTGGTCGGATCTTAGACTAGGAATGAAC-TCTTATGCCTAAGTCAACCCACGAAAT
* * * ** * * *
33715045 AAGCATGCGAGCGCTGAGCCAACCGGAGAGGCATAATGCGCAAGCCAAGGATTGGCCTGGTCCCC
191 GAGCGTGCGGGCGCTGAGCCGGCC-GAGAGGCATAATGCGCAAGCCGAGGATCGGCCCGGTCCCC
* * * * * * *
33715110 CTCTGCGTGCTGTCGGTCCCGCTGCCACAACCTTCGATCTGGCTGGGGCTTAGACGTGGAATGAA
255 CTCTGCATGCTGTCGATCCCGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAA
* * * * * *
33715175 GTCCCTATGCCTAAGCCAACCCACGAAATGGGAGTG-GAGCACTCAGCCGATTGGAGAGGCAAAA
320 CTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTCAGCCGATCGGAGAGGCAGAA
* * * * ** * * *
33715239 TGCACAAGTCGGGGATCGACTCGATCCCCCCCGCGTGCTGTCGATCCCGCT-ACTGCAAACCTCG
385 TGCACAAGCCGGGGATCGGCTCGGTCCCCCCTGCGTGCTACCGATCCAGCTGTC-GCAACCCTCG
* *
33715303 ATCCGATCTAATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGG
449 ATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGG
* * * ** *
33715353 ATGAACTCCATATGCCAAAGTCAACCCATGAAACGT-GCACACAGGCGCTCAGTCGACCGGAGAG
1 ATGAACTCCGTATGCCTAAGTCAACCCACGAAAC-TAGCGTACGGGCGCTCAGTCGACCGGAGAG
* * *
33715417 GCATAATATGCAAGCCGAGGATAGGCCAGTTCCCCCCTGCGTGCTATCGATCCTGCTGTCGCAAC
65 GCATAATACGCAAGCCGAGGATAGACCAG-TCCCCCCTGCGTGCTGTCGATCCTGCTGTCGCAAC
*** * * *
33715482 CCTCAGTCCAATCCGATCTTAGACTAGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAATTA
129 CCTCAGTCTGGTCGGATCTTAGACTAGGAATGAACTCT-TATGCCTAAGTCAACCCACGAAATGA
* * * * *
33715547 GCGTGCGGGTGTTGAACCGGCCAGAGAGGCATAATGCACAAGCCGAGGATCGACCCGGTCCCCCT
193 GCGTGCGGGCGCTGAGCCGGCC-GAGAGGCATAATGCGCAAGCCGAGGATCGGCCCGGTCCCCCT
* *
33715612 CTGCGTGTTGTCGATCCCGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACT
257 CTGCATGCTGTCGATCCCGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACT
* * * * * * *
33715677 CCCTATGCCTAAGCTAACCCATGAAATGGGCGTGAGGGCGTTCAGCCGACCGGAGAGGTAGAATA
322 CCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTCAGCCGATCGGAGAGGCAGAATG
* ** * *
33715742 CAAAAGCCAAGGATCGGCTCGGTCCCCCCTGCATGCTACCAATCCAGCTGTCGCAACCCTCGATC
387 CACAAGCCGGGGATCGGCTCGGTCCCCCCTGCGTGCTACCGATCCAGCTGTCGCAACCCTCGATC
*
33715807 C-ATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGG
452 CGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGG
33715853 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACTAGCGTACGGGCGCTCAGTCGGTCGGAGATG
1 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACTAGCGTACGGGCGCTCA----GTC------G
* * * **
33715918 CTAGCCGGAGAGGCATAATACGCAAGCCAAAGATCAG-CCCGATCCCCCTCTATGTGCTGTCGAT
56 --A-CCGGAGAGGCATAATACGCAAGCCGAGGAT-AGACCAG-TCCCCC-CTGCGTGCTGTCGAT
* * * **
33715982 CCCGCTGCCAGTCCTGCTACCACAACCCTCTA-TCTAGTTGGGGCTTAGA-TATGGAATGAACTC
115 --C-CT----G--CTG-T--CGCAACCCTC-AGTCTGGTCGGATCTTAGACTA-GGAATGAACT-
* * * * *
33716045 CTTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGTCAGAGAGGAAGAATGC
165 CTTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTGAGCCGG-CCGAGAGGCATAATGC
* * * *
33716110 GC-A----A-G-TCGG---GG-----ATC-G-A--C--CCGATCTCGCTGCCACAACCCTCGATC
229 GCAAGCCGAGGATCGGCCCGGTCCCCCTCTGCATGCTGTCGATCCCGCTGCCACAACCCTCGGTC
* * * * * *
33716154 TGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGGCAACTCACGAAATGTGTGTGTGG
294 CGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGG
* * * * * * * * * *
33716219 GCGCTCAACCGACCAGAGAGGCAGAATGCGCAAGTCGAGGATCAGCTCGATCCTCCTTGCGTGCT
359 GCGCTCAGCCGATCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCTCGGTCCCCCCTGCGTGCT
* * * * * * **
33716284 ACCGATCCTGCTGTCGCAACGCTCGGTCCGGTCTTATGTTAGACTGGGAATGAACTCTATATGCT
424 ACCGATCCAGCTGTCGCAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCT
33716349 TAGACTGGGG
489 TAGACTGGGG
* * * * * * * * * * *
33716359 ATGAACTCCGAATGCATAAGTCAACCCACAAAACGAGTGTACAGGCACTGAGCCGGCCGAAGAGG
1 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACTAGCGTACGGGCGCTCAGTCGACCGGAGAGG
* * * * * * ** * * **
33716424 CATAATGCGTAAGCCGGGGA-ACGACCCGGCCCCTCTCTGCGTACTACCTAT-CTCGCTGCCATA
66 CATAATACGCAAGCCGAGGATA-GACCAGTCCCC-C-CTGCGTGCTGTCGATCCT-GCTGTCGCA
* * ** * ** *
33716487 ACCCTCGGTCT-GACTGGGGCTTAGAC-ATGGAATGAACTCCTTATGCCTAAGCCAATTCATGAA
127 ACCCTCAGTCTGGTC-GGATCTTAGACTA-GGAATGAACT-CTTATGCCTAAGTCAACCCACGAA
* * * * * * *
33716550 AT-AGGCGTTCGGGCGCTCAGTCGGCCGAAGAGGCAGAATGTGCAAGCCCGA-GATGGGCTCGGT
189 ATGA-GCGTGCGGGCGCTGAGCCGGCCG-AGAGGCATAATGCGCAAG-CCGAGGATCGGCCCGGT
** ** * * *
33716613 CCCCCTCTGCATGCTACCGATCCTACTGTCGCAACCCTCGGTCTGCTCCAATCTTAGCCCGGGAA
251 CCCCCTCTGCATGCTGTCGATCCCGCTGCCACAACCCTC-G---G-TCCGA-C-T------GG--
** * * *
33716678 TAAACTCTGTATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACAAAACGAGCGT
301 --------G---GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGT
* * * * * * * *
33716743 GCGGGTGCCCGGCC-AGTCGGAAAGGCAGAATGCACAAGCCGGGGATCGACCCAGACCCCCCTGC
355 GCGGGCGCTCAGCCGA-TCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCTCGGTCCCCCCTGC
* * * *
33716807 GTGCAGTCGATCCTGTTACTGGTCCTA-CTGCCGCAACCCTCGATCCGGTTTGATCCTAGACTGG
419 GTGC--T--A-CC-G--A----TCC-AGCTGTCGCAACCCTCGATCCGATCTGATCTTAGACTGG
*
33716871 GAATGAACTCCGTATGCTTAGACAT-GGA
471 GAATGAACTCCGTATGCTTAGAC-TGGGG
* * * ** * * *
33716899 ACT-AACTCCGTATGTCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAACCGGCCAGAGAA
1 A-TGAACTCCGTATGCCTAAGTCAACCCACGAAACTAGCGTACGGGCGCTCAGTCGACCGGAGAG
* * * * * * * *
33716963 GCAGAATGCGTAAGCCGGGGATCGACCTAGTCCCCCCTGCGTGCTGTTGATCATACTGTCGCAAC
65 GCATAATACGCAAGCCGAGGATAGACC-AGTCCCCCCTGCGTGCTGTCGATCCTGCTGTCGCAAC
* * * * *
33717028 CCTC-GATCTGGTCTGATCTAAGGCTGGGAATGAACTCTATATGCCTAAGTCAACCCGCGAAATG
129 CCTCAG-TCTGGTCGGATCTTAGACTAGGAATGAACTCT-TATGCCTAAGTCAACCCACGAAATG
* * ** * **
33717092 AGCTTGCAGATGCTGAGCCGGCCGAAGAGGCATAATGCACAAGCC-AGGGATCGGCCCTAT-CCC
192 AGCGTGCGGGCGCTGAGCCGGCCG-AGAGGCATAATGCGCAAGCCGA-GGATCGGCCCGGTCCCC
* * * *
33717155 CTCT-CTATGTTGTC-AGTCCTGCTGCCACAACCCTTGGTTC-AGCTGGGGCTTAGACATGGAAT
255 CTCTGC-ATGCTGTCGA-TCCCGCTGCCACAACCCTCGGTCCGA-CTGGGGCTTAGACATGGAAT
* * *
33717217 GAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGTGCTCAACCGATCGGAGAGGCA
317 GAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTCAGCCGATCGGAGAGGCA
* * * ** *
33717282 GAATGCGCAAGCCGGGGATCGGCCCAGT-CCCCCTGCGTGCTGTCGATCCTGCTGTCGCAACCCT
382 GAATGCACAAGCCGGGGATCGGCTCGGTCCCCCCTGCGTGCTACCGATCCAGCTGTCGCAACCCT
* * * *
33717346 CGGTCTGAGCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGG
447 CGATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGG
*
33717398 ATGAACTCCGTATGCCTAAGTCAACCCATGAAACTAGCGTACGGGGGCTCAGTCGGTCGGAGATG
1 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACTAGCGTAC--GGG--C-G-C--TC--AG-T-
* * * * * * *
33717463 CCAGCCGGAGAGGCATAATACGCCAGCCAAGGATCAG-CCTGATCCCTCTCTACGTGCTGCCGAT
54 CGA-CCGGAGAGGCATAATACGCAAGCCGAGGAT-AGACCAG-TCCC-CCCTGCGTGCTGTCGAT
* * * **
33717527 CCCGCTGCCAGTCCTGCTACCACAACCCTCTA-TCTAGTTGGGGCTTAGA-TATGGAATGAACTC
115 --C-CT----G--CTG-T--CGCAACCCTC-AGTCTGGTCGGATCTTAGACTA-GGAATGAACT-
* * * * *
33717590 CCTATGCCTAAG-CTAACCCATC-AAATGAGCGTGCGGGCGCTCAGCCAGTCGGAGAGGCACAAT
165 CTTATGCCTAAGTC-AACCCA-CGAAATGAGCGTGCGGGCGCTGAGCC-GGCCGAGAGGCATAAT
* * * * *
33717653 GCG-TA----A-G-TCGG---GG-----ATC-G-A--C--CCGATCTCGCTGCCACAACCCTCGA
227 GCGCAAGCCGAGGATCGGCCCGGTCCCCCTCTGCATGCTGTCGATCCCGCTGCCACAACCCTCGG
* * * * * * *
33717697 TCTGTCGGGGGCTTAGAAATGGAATGAACTCCCTATGCCTAAGACAACCCACGAAATGTGCGTGT
292 TCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGC
* * ** * * *
33717762 GGGCGCTCAACCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATTAGCTCGATCCTCCTTGCGTG
357 GGGCGCTCAGCCGATCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCTCGGTCCCCCCTGCGTG
* * * **
33717827 CTACCGATCCTGCTGTCGCAACCCTCGGTCCGATCTTATCTTAGACTGGGAATGAACTCTATATG
422 CTACCGATCCAGCTGTCGCAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATG
33717892 CTTAGACTGGGG
487 CTTAGACTGGGG
* * * * * * * * * * *
33717904 ATGAACTCTGAATGCATAAGTCAACCCA-TAAAATGAGTGTACGGGCACTGAGCCGATCGAAGAG
1 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACT-AGCGTACGGGCGCTCAGTCGACCGGAGAG
* * * * * * * * * *
33717968 GCATAATGCGTAAGTCCG-GGA-ACGACCCGGCCCTCTCT-CGTACTAT--ATCCCGCTGCCACA
65 GCATAATACGCAAG-CCGAGGATA-GACCAGTCCC-CCCTGCGTGCTGTCGATCCTGCTGTCGCA
* * * ** * ** *
33718028 ACCCTCGGTC-CGACTGGGGCTTAGAC-ATGGAATGAACTCCTTATGCCTAAGCCAATTCATGAA
127 ACCCTCAGTCTGGTC-GGATCTTAGACTA-GGAATGAACT-CTTATGCCTAAGTCAACCCACGAA
* * * * * * * * *
33718091 ATGGGCGTGCGGGCGCTCAGTCGGCGGAGAGGTAGAATGCGC-AGCCCAGGGATGGGCTCGGTCC
189 ATGAGCGTGCGGGCGCTGAGCCGGCCGAGAGGCATAATGCGCAAGCCGA-GGATCGGCCCGGT-C
* * * * ***
33718155 CCCCTGCATGCTACGATCCTACTGTCGCAACCTGCGTCTGCTCTGATCTTAGCCCTGGGAATGAA
252 CCCCT-C-TG---C-A---TGCTGTCG-ATCC--CG-CTGC-C--A-C--AACCCTCGGTCCG-A
** * ** * * * *
33718220 CTCTGTATGCTTAGGCAAT-GAATGAACTCTGTATGCCTAAG-CAACCCCACAAAACGAGCGTGT
297 --CTG-GGGCTTAGAC-ATGGAATGAACTCCCTATGCCTAAGCCAA-CCCACGAAATGGGCGTGC
* * * * ** * * * *
33718283 GGGTGCTCGGCAG-TTGGAGAGGCCAGAATGCACAAGTTGGGGATCGACCCAGACCCCCCTGCGT
357 GGGCGCTCAGCCGATCGGAGAGG-CAGAATGCACAAGCCGGGGATCGGCTCGGTCCCCCCTGCGT
*
33718347 GCAGTCGATCCTGTTAACTGGTCCTA-CTG-CTGCAACCCTCGATCCGAT-TGATCCTAGACTGG
421 GC--T--A-CC-G---A----TCC-AGCTGTC-GCAACCCTCGATCCGATCTGATCTTAGACTGG
*
33718409 GAATGAACTCCGTATGCTTAGACAT-GGA
471 GAATGAACTCCGTATGCTTAGAC-TGGGG
* * * * * *
33718437 ACT-AACT-CGTATGTCTAAG-CAA-CCATGAAACGAGCGTACGGGCGCTCCAATCGGCCAGAGA
1 A-TGAACTCCGTATGCCTAAGTCAACCCACGAAACTAGCGTACGGGCGCT-CAGTCGACCGGAGA
* * * * * * * * * *
33718498 GGCAGAATGCGTAAG-CGGGGATCGACCTAGTCCCCCCTGCGTGCTGTTGATCATACTGCCG-TA
64 GGCATAATACGCAAGCCGAGGATAGACC-AGTCCCCCCTGCGTGCTGTCGATCCTGCTGTCGCAA
* * * * ** * **
33718561 CCC-CCGATCCGGACTGATC-TAGGTTGGGAATGAACTCTATATGCCTAAGTCAACCCGTGAAAT
128 CCCTCAG-TCTGGTCGGATCTTAGACTAGGAATGAACTCT-TATGCCTAAGTCAACCCACGAAAT
* * * * *
33718624 GAGCTTGC-GGCACTGAGCC-GACGAAGAGGCATAATGTGCAAGCC-AGGGATCGGCCCTGT-CC
191 GAGCGTGCGGGCGCTGAGCCGGCCG-AGAGGCATAATGCGCAAGCCGA-GGATCGGCCCGGTCCC
* * * * *
33718685 CCTCTGTATGTTGTC-AGTCCTGCTGCCACAACCCTTGGTTC-AGCTGGGGCTTAGACATGGAAT
254 CCTCTGCATGCTGTCGA-TCCCGCTGCCACAACCCTCGGTCCGA-CTGGGGCTTAGACATGGAAT
* * * * *
33718748 GAACTCCCTATGCCTAAGCCGACCCACGAAACGGGCGTGCGGGTGCTCAACCGACCGGAGAGGCA
317 GAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTCAGCCGATCGGAGAGGCA
* * * *
33718813 GAATGCGCAAGCCGGGGATCGGCCCAGT-CCCCCTGCGTGCTACCGATCCTGCTGTCGCAACCCT
382 GAATGCACAAGCCGGGGATCGGCTCGGTCCCCCCTGCGTGCTACCGATCCAGCTGTCGCAACCCT
* * *
33718877 CGGTCCGAGCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGG
447 CGATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGG
* * *
33718929 ATGAACTCCGTATGCCTAAGTCAACACATGAAACTAGCGTACGGGAGCTCAGTCGGCCGGAGATG
1 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACTAGCGTACGGGCGCTCAGT----C------G
* * * * *
33718994 CCAGCCGGAAAGGCATAATACGCAAGCCAAGGATCAG-CCTGATCCCTCTCTACGTGCTGCCAAT
56 --A-CCGGAGAGGCATAATACGCAAGCCGAGGAT-AGACCAG-TCCC-CCCTGCGTGCTG----T
** * * * **
33719058 CCCGCTACCAGTCCTGCTACCACAACCCTCTA-TCTAGTTGGGGCTTAGA-TATGGAATGAACTC
111 --CG-----A-TCCTGCTGTCGCAACCCTC-AGTCTGGTCGGATCTTAGACTA-GGAATGAACT-
* * * * * * * *
33719121 CCTATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGTGCTCAGCCGGTCGGAGAGGTACAATGC
165 CTTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTGAGCCGG-CCGAGAGGCATAATGC
* * * *
33719186 GC-A----A-G-TCGG---GG-----ATC-G-A--C--CCGATCTCGCTGCCACAACCCTCGATC
229 GCAAGCCGAGGATCGGCCCGGTCCCCCTCTGCATGCTGTCGATCCCGCTGCCACAACCCTCGGTC
* * * *
33719230 TGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGGCAACCCACGAAATGTGCGTGTGG
294 CGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGG
* * * * *
33719295 GCGCTCAACCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCTCGGTCCTCCTTGCGTGCT
359 GCGCTCAGCCGATCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCTCGGTCCCCCCTGCGTGCT
* * * * **
33719360 ACCGATCCTGCTGTCGCAACACTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTATATGCT
424 ACCGATCCAGCTGTCGCAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCT
33719425 TAGACTGGGG
489 TAGACTGGGG
* * * * * * * * * *
33719435 ATGAACTCCGAATGCATAAGTCAACCCACAAAACGAGTGTACGGGCACTGAGCCGGCCGAAGAGG
1 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACTAGCGTACGGGCGCTCAGTCGACCGGAGAGG
* * * * * * * ** * * * *
33719500 CATAATGCGCAAGTCGGGGA-ACGACCCGGCCCTTCTCTGCGTACTACCGGTCCCGCTGCCACAA
66 CATAATACGCAAGCCGAGGATA-GACCAGTCCC--CCCTGCGTGCTGTCGATCCTGCTGTCGCAA
* * * ** * ** *
33719564 CCCTCGGTC-CGACTGGGGCTTAGAC-ATGGAATGAACTCCTTATGCCTAAGCCAATTCATGAAA
128 CCCTCAGTCTGGTC-GGATCTTAGACTA-GGAATGAACT-CTTATGCCTAAGTCAACCCACGAAA
* * * * *
33719627 TG-GCCGTGCGGGTGCTCAGCCGGCCGGAGAGGCAGAATGTGCAAGCCCG-GGATGGGCCCGGTC
190 TGAG-CGTGCGGGCGCTGAGCCGGCC-GAGAGGCATAATGCGCAAG-CCGAGGATCGGCCCGGTC
* ** ** * *
33719690 CCCCCCTGCATGCTACCGATCCTACTGTCGCAACCCTCGGTCTGCTCCGATCTTAGCCTGGGAAT
252 CCCCTCTGCATGCTGTCGATCCCGCTGCCACAACCCTC-G---G-TCCG-----A--CT--G---
** * * *
33719755 GAACTCTGTATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACAAAACGAGCGTG
300 G------G---GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTG
* * * * * * * * *
33719820 CGGGTGC-CCGACC-ACTCAGAGAGGCAGAATGCACAAGTCGGGGATCGACCCAGACCCCTCCTA
356 CGGGCGCTCAG-CCGA-TCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCTCGGTCCCC-CCTG
* * * * *
33719883 CATGC-AGCCGATCCTGTTGCTGGTCCTACTGTCGTAACCCTCGATCCGATTTGATCCTAGATTG
418 CGTGCTA-CCGATCC---AGCT-G---T-C-G-C--AACCCTCGATCCGATCTGATCTTAGACTG
*
33719947 GGAATGAACTCCGTATGCTTAGACAT-GGA
470 GGAATGAACTCCGTATGCTTAGAC-TGGGG
* * * ** * *
33719976 ACT-AACTCCGTATGTCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAACCGGCCAGAGAG
1 A-TGAACTCCGTATGCCTAAGTCAACCCACGAAACTAGCGTACGGGCGCTCAGTCGACCGGAGAG
* * * * * * * *
33720040 GCAGAATGCGTAAGCCGGGGATCGACCTAGTCCCCCCTGCGTGCTGTTGATCCTACTGCCGCAAC
65 GCATAATACGCAAGCCGAGGATAGACC-AGTCCCCCCTGCGTGCTGTCGATCCTGCTGTCGCAAC
* * * * * * *
33720105 CCTCGGTCCGGTCTGATCTAAGGCTGGGAATGAACTCTATATGCCTAAGTCAACCCGCGAAATGA
129 CCTCAGTCTGGTCGGATCTTAGACTAGGAATGAACTCT-TATGCCTAAGTCAACCCACGAAATGA
* * * *
33720170 GCTTGCGGACGCTGAGCCGACCGAAGAGGCATAATGCGCAAGCC-AGGGATCGGCCCTGT-CCCC
193 GCGTGCGGGCGCTGAGCCGGCCG-AGAGGCATAATGCGCAAGCCGA-GGATCGGCCCGGTCCCCC
* * * * *
33720233 TCTGTATGTTGTC-AGTCCTGCTGCCACAACCCTTGGTTC-AGCTGGGGCTTAGACATGGAATGA
256 TCTGCATGCTGTCGA-TCCCGCTGCCACAACCCTCGGTCCGA-CTGGGGCTTAGACATGGAATGA
* * * *
33720296 ACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGTGCTCAACCGACCGGAGAGGCAGA
319 ACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTCAGCCGATCGGAGAGGCAGA
* * * * * * * *
33720361 TTGCACAAGCCGGGGATTGACCCAGTCCCCCCTGCGTGCTGCCGATCCTGCTATCGCAACCCTCG
384 ATGCACAAGCCGGGGATCGGCTCGGTCCCCCCTGCGTGCTACCGATCCAGCTGTCGCAACCCTCG
* ** * *
33720426 GTCTAAATC-GATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTAGGG
449 ATC-CGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGG
* * * * * *
33720476 ATGAACTCCGTTTGCCTAAGTCAACCCATGAAA-TGAGCGTATGGGCCCTCAGCCGACCAGAGAG
1 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACT-AGCGTACGGGCGCTCAGTCGACCGGAGAG
33720540 ACAGGATGCG
Statistics
Matches: 3966, Mismatches: 821, Indels: 800
0.71 0.15 0.14
Matches are distributed among these distances:
476 18 0.00
477 72 0.02
478 1 0.00
480 11 0.00
481 185 0.05
482 4 0.00
483 3 0.00
484 3 0.00
486 4 0.00
487 6 0.00
488 6 0.00
489 4 0.00
491 35 0.01
492 62 0.02
493 109 0.03
494 10 0.00
495 23 0.01
496 7 0.00
497 2 0.00
498 7 0.00
499 105 0.03
500 471 0.12
501 79 0.02
502 44 0.01
503 5 0.00
504 23 0.01
505 484 0.12
506 329 0.08
507 29 0.01
508 14 0.00
509 27 0.01
510 5 0.00
511 25 0.01
512 141 0.04
513 148 0.04
514 20 0.01
515 11 0.00
516 7 0.00
517 11 0.00
518 10 0.00
519 11 0.00
520 15 0.00
521 92 0.02
522 17 0.00
523 46 0.01
524 14 0.00
525 97 0.02
526 92 0.02
527 11 0.00
528 188 0.05
529 17 0.00
530 61 0.02
531 83 0.02
532 23 0.01
533 57 0.01
534 28 0.01
535 1 0.00
536 2 0.00
537 5 0.00
538 35 0.01
539 132 0.03
540 243 0.06
541 130 0.03
542 6 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (498 bp):
ATGAACTCCGTATGCCTAAGTCAACCCACGAAACTAGCGTACGGGCGCTCAGTCGACCGGAGAGG
CATAATACGCAAGCCGAGGATAGACCAGTCCCCCCTGCGTGCTGTCGATCCTGCTGTCGCAACCC
TCAGTCTGGTCGGATCTTAGACTAGGAATGAACTCTTATGCCTAAGTCAACCCACGAAATGAGCG
TGCGGGCGCTGAGCCGGCCGAGAGGCATAATGCGCAAGCCGAGGATCGGCCCGGTCCCCCTCTGC
ATGCTGTCGATCCCGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCT
ATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTCAGCCGATCGGAGAGGCAGAATGCACA
AGCCGGGGATCGGCTCGGTCCCCCCTGCGTGCTACCGATCCAGCTGTCGCAACCCTCGATCCGAT
CTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGG
Found at i:33716270 original size:138 final size:138
Alignment explanation
Indices: 33716001--33716261 Score: 380
Period size: 138 Copynumber: 1.9 Consensus size: 138
33715991 AGTCCTGCTA
* * * *
33716001 CCACAACCCTCTATCTAGTTGGGGCTTAGATATGGAATGAACTCCTTATGCCTAAGCCAACCCAC
1 CCACAACCCTCGATCTAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
* ** *
33716066 GAAATGAGCGTGCGGGCGCTCAGCCGGTCAGAGAGGAAGAATGCGCAAGTCGGGGATCGACCCGA
66 GAAATGAGCGTGCGGGCGCTCAACCGACCAGAGAGGAAGAATGCGCAAGTCGAGGATCGACCCGA
33716131 TCTCGCTG
131 TCTCGCTG
* *
33716139 CCACAACCCTCGATCT-GACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGGCAACTCA
1 CCACAACCCTCGATCTAG-CTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
* * * *
33716203 CGAAATGTGTGTGTGGGCGCTCAACCGACCAGAGAGGCAGAATGCGCAAGTCGAGGATC
65 CGAAATGAGCGTGCGGGCGCTCAACCGACCAGAGAGGAAGAATGCGCAAGTCGAGGATC
33716262 AGCTCGATCC
Statistics
Matches: 108, Mismatches: 14, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
137 1 0.01
138 107 0.99
ACGTcount: A:0.26, C:0.27, G:0.28, T:0.18
Consensus pattern (138 bp):
CCACAACCCTCGATCTAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
GAAATGAGCGTGCGGGCGCTCAACCGACCAGAGAGGAAGAATGCGCAAGTCGAGGATCGACCCGA
TCTCGCTG
Found at i:33716353 original size:26 final size:25
Alignment explanation
Indices: 33716318--33716366 Score: 80
Period size: 26 Copynumber: 1.9 Consensus size: 25
33716308 GGTCCGGTCT
33716318 TATGTTAGACTGGGAATGAACTCTA
1 TATGTTAGACTGGGAATGAACTCTA
*
33716343 TATGCTTAGACTGGGGATGAACTC
1 TATG-TTAGACTGGGAATGAACTC
33716367 CGAATGCATA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 4 0.18
26 18 0.82
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.31
Consensus pattern (25 bp):
TATGTTAGACTGGGAATGAACTCTA
Found at i:33717313 original size:158 final size:158
Alignment explanation
Indices: 33716886--33717386 Score: 405
Period size: 158 Copynumber: 3.2 Consensus size: 158
33716876 AACTCCGTAT
* * * *
33716886 GCTTAGACATGGAACT-AACTCCGTATGTCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCA
1 GCTTAGACATGGAA-TGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCA
* * * * * *
33716950 ACCGGCCAGAGAAGCAGAATGCGTAAGCCGGGGATCGACCTAGTCCCCCCTGCGTGCTGTTGATC
65 ACCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCAGTCCCCCCTGCGTGATGTTGATC
* *
33717015 ATACTGTCGCAACCCTCGATCTGGTCTGA
130 ATACTGTCACAACCCTCGATCTAGTCTGA
* * * * * * * * * * *
33717044 TCTAAGGC-TGGGAATGAACTCTATATGCCTAAGTCAACCCGCGAAATGAGCTTGCAGATGCTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCA
* * * * * *
33717108 GCCGGCCGAAGAGGCATAATGCACAAGCCAGGGATCGGCCCTA-TCCCCTCT-C-T-ATGTTG-T
65 ACCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCC-AGTCCCCCCTGCGTGATGTTGAT
* * * *
33717168 CAGTCCTGCTGCCACAACCCTTGGT-TCAG-CTGGG
129 CA-TACTG-T--CACAACCCTCGATCT-AGTCT-GA
* *
33717202 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAA
** * * *
33717267 CCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCAGT-CCCCCTGCGTGCTGTCGATCC
66 CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCAGTCCCCCCTGCGTGATGTTGATCA
* * * *
33717331 TGCTGTCGCAACCCTCGGTCTGAG-CCGA
131 TACTGTCACAACCCTCGATCT-AGTCTGA
* *
33717359 TCTTAGAC-TGGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCATATGC
33717387 TTAGACTGGG
Statistics
Matches: 261, Mismatches: 65, Indels: 35
0.72 0.18 0.10
Matches are distributed among these distances:
154 3 0.01
155 9 0.03
156 3 0.01
157 48 0.18
158 184 0.70
159 4 0.02
160 8 0.03
161 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAA
CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCAGTCCCCCCTGCGTGATGTTGATCA
TACTGTCACAACCCTCGATCTAGTCTGA
Found at i:33717396 original size:26 final size:26
Alignment explanation
Indices: 33717360--33717412 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
33717350 CTGAGCCGAT
33717360 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
33717386 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
33717412 C
1 C
33717413 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:33717803 original size:138 final size:138
Alignment explanation
Indices: 33717546--33717805 Score: 375
Period size: 138 Copynumber: 1.9 Consensus size: 138
33717536 AGTCCTGCTA
* * *
33717546 CCACAACCCTCTATCTAGTTGGGGCTTAGATATGGAATGAACTCCCTATGCCTAAGCTAACCCAT
1 CCACAACCCTCGATCTAGTGGGGGCTTAGAAATGGAATGAACTCCCTATGCCTAAGCTAACCCAT
* * *
33717611 CAAATGAGCGTGCGGGCGCTCAGCCAGTCGGAGAGGCACAATGCGTAAGTCGGGGATCGACCCGA
66 CAAATGAGCGTGCGGGCGCTCAACCAGTCGGAGAGGCACAATGCGCAAGCCGGGGATCGACCCGA
33717676 TCTCGCTG
131 TCTCGCTG
33717684 CCACAACCCTCGATCT-GTCGGGGGCTTAGAAATGGAATGAACTCCCTATGCCTAAGAC-AACCC
1 CCACAACCCTCGATCTAGT-GGGGGCTTAGAAATGGAATGAACTCCCTATGCCTAAG-CTAACCC
* * *
33717747 A-CGAAATGTGCGTGTGGGCGCTCAACC-GATCGGAGAGGCAGAATGCGCAAGCCGGGGAT
64 ATC-AAATGAGCGTGCGGGCGCTCAACCAG-TCGGAGAGGCACAATGCGCAAGCCGGGGAT
33717806 TAGCTCGATC
Statistics
Matches: 109, Mismatches: 9, Indels: 8
0.87 0.07 0.06
Matches are distributed among these distances:
137 4 0.04
138 104 0.95
139 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.28, T:0.18
Consensus pattern (138 bp):
CCACAACCCTCGATCTAGTGGGGGCTTAGAAATGGAATGAACTCCCTATGCCTAAGCTAACCCAT
CAAATGAGCGTGCGGGCGCTCAACCAGTCGGAGAGGCACAATGCGCAAGCCGGGGATCGACCCGA
TCTCGCTG
Found at i:33718263 original size:26 final size:26
Alignment explanation
Indices: 33718213--33718263 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
33718203 TTAGCCCTGG
* *
33718213 GAATGAACTCTGTATGCTTAGGCAAT
1 GAATGAACTCTGTATGCCTAAGCAAT
33718239 GAATGAACTCTGTATGCCTAAGCAA
1 GAATGAACTCTGTATGCCTAAGCAA
33718264 CCCCACAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.27
Consensus pattern (26 bp):
GAATGAACTCTGTATGCCTAAGCAAT
Found at i:33718920 original size:26 final size:26
Alignment explanation
Indices: 33718891--33718943 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
33718881 CCGAGCCGAT
33718891 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
33718917 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
33718943 C
1 C
33718944 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:33719325 original size:138 final size:138
Alignment explanation
Indices: 33719077--33719337 Score: 389
Period size: 138 Copynumber: 1.9 Consensus size: 138
33719067 AGTCCTGCTA
* * *
33719077 CCACAACCCTCTATCTAGTTGGGGCTTAGATATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
1 CCACAACCCTCGATCTAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
* * * * *
33719142 AAAATGAGCGTGCGGGTGCTCAGCCGGTCGGAGAGGTACAATGCGCAAGTCGGGGATCGACCCGA
66 AAAATGAGCGTGCGGGCGCTCAACCGATCGGAGAGGCACAATGCGCAAGCCGGGGATCGACCCGA
33719207 TCTCGCTG
131 TCTCGCTG
*
33719215 CCACAACCCTCGATCT-GACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGGCAACCCA
1 CCACAACCCTCGATCTAG-CTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
* * * *
33719279 CGAAATGTGCGTGTGGGCGCTCAACCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATC
65 CAAAATGAGCGTGCGGGCGCTCAACCGATCGGAGAGGCACAATGCGCAAGCCGGGGATC
33719338 AGCTCGGTCC
Statistics
Matches: 109, Mismatches: 13, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
137 1 0.01
138 108 0.99
ACGTcount: A:0.25, C:0.28, G:0.28, T:0.18
Consensus pattern (138 bp):
CCACAACCCTCGATCTAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
AAAATGAGCGTGCGGGCGCTCAACCGATCGGAGAGGCACAATGCGCAAGCCGGGGATCGACCCGA
TCTCGCTG
Found at i:33719845 original size:344 final size:343
Alignment explanation
Indices: 33719210--33719870 Score: 866
Period size: 344 Copynumber: 1.9 Consensus size: 343
33719200 GACCCGATCT
* *
33719210 CGCTGCCACAACCCTCGATCTGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGGCAA
1 CGCTGCCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
* * *
33719275 CCCACGAAATGTGCGTGTGGGCGCTCAACCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCAG
66 CCCACGAAATGTGCGTGCGGGCGCTCAACCGACCGGAGAGGCAGAATGCGCAAGCCCGGGATCAG
* * * * * * *
33719340 CTCGGTCCTCCTTGCGTGCTACCGATCCTGCTGTCGCAACACTCGGTCCGGTCTGATCTTAGACT
131 CCCGGTCCCCCCTGCATGCTACCGATCCTACTGTCGCAACACTCGGTCCGCTCCGATCTTAGACT
* *
33719405 GGGAATGAACTCTATATGCTTAGACTGGGGATGAACTCCGAATGCATAAGTCAACCCACAAAACG
196 GGGAATGAACTCTATATGCTTAGACTGGGAATGAACTCCGAATGCATAAGCCAACCCACAAAACG
* * * * *
33719470 AGTGTACGGGCACTGAGCCGGCCGAAGAGGCATAATGCGCAAGTCGGGGAACGACCCGGCCCTTC
261 AGCGTACGGGCACCGAGCCGACCGAAGAGGCAGAATGCACAAGTCGGGGAACGACCCGGCCCTTC
33719535 TCTGCGTACTACCGGTCC
326 TCTGCGTACTACCGGTCC
* *
33719553 CGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAA
1 CGCTGCCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
** * * * * * **
33719618 TTCATGAAATG-GCCGTGCGGGTGCTCAGCCGGCCGGAGAGGCAGAATGTGCAAGCCCGGGATGG
66 CCCACGAAATGTG-CGTGCGGGCGCTCAACCGACCGGAGAGGCAGAATGCGCAAGCCCGGGATCA
* * *
33719682 GCCCGGTCCCCCCCTGCATGCTACCGATCCTACTGTCGCAACCCTCGGTCTGCTCCGATCTTAGC
130 GCCCGGT-CCCCCCTGCATGCTACCGATCCTACTGTCGCAACACTCGGTCCGCTCCGATCTTAGA
* * * *
33719747 CTGGGAATGAACTCTGTATGCTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCACAAA
194 CTGGGAATGAACTCTATATGCTTAGAC-TGGGAATGAACTCCGAATGCATAAGCCAACCCACAAA
* *
33719811 ACGAGCGTGCGGGTGC-CCGA-CC-ACTC-AGAGAGGCAGAATGCACAAGTCGGGGATCGACCC
258 ACGAGCGTAC-GG-GCACCGAGCCGAC-CGA-AGAGGCAGAATGCACAAGTCGGGGAACGACCC
33719871 AGACCCCTCC
Statistics
Matches: 272, Mismatches: 39, Indels: 13
0.84 0.12 0.04
Matches are distributed among these distances:
342 1 0.00
343 119 0.44
344 144 0.53
345 6 0.02
346 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (343 bp):
CGCTGCCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
CCCACGAAATGTGCGTGCGGGCGCTCAACCGACCGGAGAGGCAGAATGCGCAAGCCCGGGATCAG
CCCGGTCCCCCCTGCATGCTACCGATCCTACTGTCGCAACACTCGGTCCGCTCCGATCTTAGACT
GGGAATGAACTCTATATGCTTAGACTGGGAATGAACTCCGAATGCATAAGCCAACCCACAAAACG
AGCGTACGGGCACCGAGCCGACCGAAGAGGCAGAATGCACAAGTCGGGGAACGACCCGGCCCTTC
TCTGCGTACTACCGGTCC
Found at i:33719896 original size:185 final size:183
Alignment explanation
Indices: 33719581--33720148 Score: 525
Period size: 197 Copynumber: 3.0 Consensus size: 183
33719571 TCCGACTGGG
** * *
33719581 GCTTAGACATGGAATGAACTCCT-TATGCCTAAGCCAATTCATGAAATG-GCCGTGCGGGTGCTC
1 GCTTAGACATGGAATGAACT-CTGTATGCCTAAGCCAACCCACGAAACGAG-CGTGCGGGTGCTC
* * * * * *
33719644 AGCCGGCCGGAGAGGCAGAATGTGCAAGCCCGGGATGGGCCCGGTCCCCCCCTGCATGCTA-CCG
64 A-CCGGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCAGT-CCCCCCTGCATGC-AGCCG
* * * *
33719708 ATCCTACTGTCGCAACCCTCGGTCTGCTCCGATCTTAGCCTGGGAATGAACTCTGTAT
126 ATCCTACTGTCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCTGTAT
* *
33719766 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGTGCCCGA
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTC-A
* * * * *
33719831 CC-ACTCAGAGAGGCAGAATGCACAAGTCGGGGATCGACCCAGACCCCTCCTACATGCAGCCGAT
65 CCGGC-CAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCAGTCCCC-CCTGCATGCAGCCGA-
* * * * * *
33719895 CCTGTTGCTGGTCCTACTGTCGTAACCCTCGATCCGATTTGATCCTAGATTGGGAATGAACTCCG
127 -----------TCCTACTGTCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCTG
33719960 TAT
181 TAT
* * * *
33719963 GCTTAGACATGGAACT-AACTCCGTATGTCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCA
1 GCTTAGACATGGAA-TGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTC-
* * * * **
33720027 ACCGGCCAGAGAGGCAGAATGCGTAAGCCGGGGATCGACCTAGTCCCCCCTGCGTGCTGTTGATC
64 ACCGGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCAGTCCCCCCTGCATGCAGCCGATC
* * * * *
33720092 CTACTGCCGCAACCCTCGGTCCGGTCTGATCTAAGGCTGGGAATGAACTCTATAT
129 CTACTGTCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCTGTAT
33720147 GC
1 GC
33720149 CTAAGTCAAC
Statistics
Matches: 307, Mismatches: 56, Indels: 41
0.76 0.14 0.10
Matches are distributed among these distances:
184 56 0.18
185 95 0.31
186 2 0.01
196 10 0.03
197 142 0.46
198 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.21
Consensus pattern (183 bp):
GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAC
CGGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCAGTCCCCCCTGCATGCAGCCGATCCT
ACTGTCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCTGTAT
Found at i:33720464 original size:158 final size:158
Alignment explanation
Indices: 33719979--33720464 Score: 485
Period size: 158 Copynumber: 3.1 Consensus size: 158
33719969 ACATGGAACT
* * * *
33719979 AACTCCGTATGTCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAACCGGCCAGAGAGGCAG
1 AACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGACCGGAGAGGCAG
* * * *
33720044 AATGCGTAAGCCGGGGATCGACCTAGTCCCCCCTGCGTGCTGTTGATCCTACTGCCGCAACCCTC
66 AATGCGCAAGCCGGGGATCGACCCAGTCCCCCCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTC
* * * *
33720109 GGTC-CGGTCTGATCTAAGGCTGGGAATG
131 GGTCTAGATC-GATCTTAGACTGGGAATG
** * * * * * * * * *
33720137 AACTCTATATGCCTAAGTCAACCCGCGAAATGAGCTTGCGGACGCTGAGCCGACCGAAGAGGCAT
1 AACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGACCGGAGAGGCAG
* * * * ** * *
33720202 AATGCGCAAGCCAGGGATCGGCCCTGTCCCCTCTGTATGTTGTC-AGTCCTGCTGCCACAACCCT
66 AATGCGCAAGCCGGGGATCGACCCAGTCCCCCCTGCGTGCTGTCGA-TCCTGCTGCCGCAACCCT
* * * **
33720266 TGGT-TCAGCTGGGGCTTAGACAT-GGAATG
130 CGGTCT-AGATCGATCTTAGAC-TGGGAATG
* * *
33720295 AACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGTGCTCAACCGACCGGAGAGGCAG
1 AACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGACCGGAGAGGCAG
* * * * **
33720360 ATTGCACAAGCCGGGGATTGACCCAGTCCCCCCTGCGTGCTGCCGATCCTGCTATCGCAACCCTC
66 AATGCGCAAGCCGGGGATCGACCCAGTCCCCCCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTC
*
33720425 GGTCTAAATCGATCTTAGACTGGGAATG
131 GGTCTAGATCGATCTTAGACTGGGAATG
*
33720453 AACTTCGTATGC
1 AACTCCGTATGC
33720465 TTAGACTAGG
Statistics
Matches: 251, Mismatches: 70, Indels: 14
0.75 0.21 0.04
Matches are distributed among these distances:
157 2 0.01
158 244 0.97
159 5 0.02
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (158 bp):
AACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGACCGGAGAGGCAG
AATGCGCAAGCCGGGGATCGACCCAGTCCCCCCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTC
GGTCTAGATCGATCTTAGACTGGGAATG
Found at i:33721668 original size:26 final size:26
Alignment explanation
Indices: 33721639--33721691 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
33721629 CTGATCCGAT
33721639 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
33721665 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
33721691 C
1 C
33721692 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:33723132 original size:26 final size:26
Alignment explanation
Indices: 33723095--33723145 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
33723085 TGGTCCGATC
*
33723095 TTAGACTGGGAATGAACTTCGTATGA
1 TTAGACTGGGAATGAACTCCGTATGA
33723121 TTAGACAT-GGAATGAACTCCGTATG
1 TTAGAC-TGGGAATGAACTCCGTATG
33723146 CCTAAGCCAG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.14, G:0.25, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGA
Found at i:33723621 original size:158 final size:158
Alignment explanation
Indices: 33723121--33723621 Score: 452
Period size: 158 Copynumber: 3.2 Consensus size: 158
33723111 CTTCGTATGA
* * * *
33723121 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAGCCTACGAAAAGAGCGTGCGGGCGCTTAGCC
1 TTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAAAGAGCGTGCGGGCGCTCAGCC
* * * * * * * ** *
33723186 GACCAGAGAGGTAGAATACGCAAGTCGAGGATCGGCCCAGTCCCCACTGCGTGCTGTCGATTTTA
66 GAACGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCAGTCCCCTCTGCGTGCTGCCGATCCTG
** * *
33723251 CTGTTGCAACCCTCAGTCCGATCCGATC
131 CTGCCGCAACCCTCAGTCTGGTCCGATC
* * * * * * * * *
33723279 TTAGA-TTGGGAATTAACTCCATATGCCTAAGTCAACCCACGAAACGAGTGTGAGGGCACTGAGT
1 TTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAAAGAGCGTGCGGGCGCTCAGC
* * * * * *
33723343 C-AACTGGAGAGGCATAATGTGCAAGCCAGGGATTGGCCCAGTCCCCCTCTGCATGCTGCCGATC
65 CGAAC-GGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCAGT-CCCCTCTGCGTGCTGCCGATC
* * * * * **
33723407 CCGCTGCCACAACCCTCGGTCT-GACTGGGGC
128 CTGCTGCCGCAACCCTCAGTCTGGTC-CGATC
* * * * * * *
33723438 TTAGACATGGCATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCATGCGGGCGCTCAACC
1 TTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAAAGAGCGTGCGGGCGCTCAGCC
* * * * * *
33723503 GATCGGAGAGGCAGAATGCGCAAGTTGGGGATCGACCCAGTCCCTTTTGCGTGCTCCCGATCCTG
66 GAACGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCAGTCCCCTCTGCGTGCTGCCGATCCTG
33723568 CTGCCGCAACCCTCAGTCTGGTCCGATC
131 CTGCCGCAACCCTCAGTCTGGTCCGATC
33723596 TTAGAC-TGAGAATGAACTCCATATGC
1 TTAGACATG-GAATGAACTCCATATGC
33723622 TTAGATTGGG
Statistics
Matches: 260, Mismatches: 75, Indels: 16
0.74 0.21 0.05
Matches are distributed among these distances:
157 5 0.02
158 139 0.53
159 113 0.43
160 3 0.01
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (158 bp):
TTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAAAGAGCGTGCGGGCGCTCAGCC
GAACGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCAGTCCCCTCTGCGTGCTGCCGATCCTG
CTGCCGCAACCCTCAGTCTGGTCCGATC
Found at i:33724531 original size:26 final size:26
Alignment explanation
Indices: 33724502--33724554 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
33724492 CTGGTCCGAT
*
33724502 CTTAGGCTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
33724528 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
33724554 C
1 C
33724555 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.23, C:0.21, G:0.30, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:33725058 original size:26 final size:26
Alignment explanation
Indices: 33725029--33725081 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
33725019 CCGATTCGAT
*
33725029 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
33725055 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
33725081 C
1 C
33725082 CTAAATCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:33725352 original size:527 final size:525
Alignment explanation
Indices: 33724498--33725659 Score: 1375
Period size: 527 Copynumber: 2.2 Consensus size: 525
33724488 CGGTCTGGTC
* *
33724498 CGATCTTAGGCTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTTA
1 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCA
* ** * * *
33724563 ACCCATGAAACGAGTGTACGGGGCGCTCAACCGACTGGAAAGGCCGACTAGAGAGGCATATTGCG
66 ACCCATGAAACGAGCGTAC-GGGCGCTCAGTCGACCGGAGAGGCCGACTAGAGAGGCATAATGCG
* * *
33724628 CAAGCCAAGGATCAGCCCGATCCCCCTCTATGTGCTGTCAAGCCCGCTGCCGGTCCTACTACCAT
130 CAAGCCAAGGATCAGCCCGATCACCCTCTACGTGCTGTCAAGCCCGCTGCCGGTCCTACTACCAG
* * **
33724693 AACCCTCGATTCAGCTGGGGTTAGACATGGAATGAACTCCGTACGCCTAAACCAACTTAAGAAAC
195 AACCCTCGATCCAGCTGGGGTTAGACATGGAATGAACTACGTACGCCTAAACCAACCCAAGAAAC
* ** *
33724758 GAGCGTGCAGACGTTGAGCTGGCCAGAAAGGCATAATGCATAAGCCGAGGATCGACCCGATCCCC
260 GAGCGTGCAGACATTGAGCCAGCCAGAAAGGCATAATGCACAAGCCGAGGATCGACCCGATCCCC
* * * * * *
33724823 CTCTGTGTGCTGTTGGT-CCTGCTGCCATAGCCCTCAG-TCCGGTTGGGGCATAGACATGGAATG
325 CTCTGCGTGCTGTCGGTCCCT-CTACCACAACCCT-AGATCCGGCTGGGGCATAGACATGGAATG
* * * *
33724886 AACTCCTTATACCTAAGCCAACCCATGAAATGGGCATGC-GGGAGCTCAACC-GATCGTAGAGGC
388 AACTCCCTATACCTAAGCCAACCCACGAAATGGGCATGCAGGCA-CTCAACCAG-TCGGAGAGGC
* * * ** * * * *
33724949 AGAATGCGCAAGCCGAGGATTGGCTCGGTCCCTTTTACGTGCTACCGATCTTGCTATCGTAACCC
451 AGAATGCGCAAGCCAAGGATCGGCCCGGTCCCCCTTACATGCTACCGATCCTACTATCGCAACCC
33725014 TCGATCCGATT
516 TCGATCCGA-T
* *
33725025 CGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAATCA
1 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCA
* ** * * *
33725090 ACCCATGAAATGAGCGTACGGATGCTCAGTCGACCGGAGAGGCC-AGTCGGAGAGGCATAATGTG
66 ACCCATGAAACGAGCGTACGGGCGCTCAGTCGACCGGAGAGGCCGACT-AGAGAGGCATAATGCG
* * * * * * *
33725154 CAAGCCGAGGATCAGCTCGATCACCCTCTGCGTGCTGTCGATCTCGCTGTCGGTCCTACTACCAG
130 CAAGCCAAGGATCAGCCCGATCACCCTCTACGTGCTGTCAAGCCCGCTGCCGGTCCTACTACCAG
* * * * * *
33725219 AACCTTCGGTCC-GACTGGGGCTTATACATGGAATGAACTACGTATGCCTAAGCCAACCCACGAA
195 AACCCTCGATCCAG-CTGGGG-TTAGACATGGAATGAACTACGTACGCCTAAACCAACCCAAGAA
* * * * * * * * * *
33725283 ATGAGCGTGCGGGCATTGAGCCATCCGGAGAGGCATAATGCGCAAGTCGGGGATCGGCCCGGA-C
258 ACGAGCGTGCAGACATTGAGCCAGCCAGAAAGGCATAATGCACAAGCCGAGGATCGACCC-GATC
* * *
33725347 CCCCTCTGCGTGCTGTCGGTCCCTCTACCACAACCCTTGATCTGGCTGGGGCTTAGACATGGAAT
322 CCCCTCTGCGTGCTGTCGGTCCCTCTACCACAACCCTAGATCCGGCTGGGGCATAGACATGGAAT
* * * *
33725412 GAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCCTGCAGGCACTCAGCCAGTCGGAGAGGTA
387 GAACTCCCTATACCTAAGCCAACCCACGAAATGGGCATGCAGGCACTCAACCAGTCGGAGAGGCA
* * * * *
33725477 GAATGTGCAGGCCAAGGATCGGCCCGGTCCCCCTTGCATGCTACCGATCCTACTGTCGCAAGCCT
452 GAATGCGCAAGCCAAGGATCGGCCCGGTCCCCCTTACATGCTACCGATCCTACTATCGCAACCCT
33725542 CGATCCGAT
517 CGATCCGAT
** * * * *
33725551 CTGATCTTAGACTGGGAATTTACTCCATATGCTTAGATTGGGGATGAACTTCATATGCCTAAGTC
1 C-GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTC
* *
33725616 AACCCACGAAACGAGCGTACGGGCGCTCAGTCGACCAGAGAGGC
65 AACCCATGAAACGAGCGTACGGGCGCTCAGTCGACCGGAGAGGC
33725660 AGGATGCGCA
Statistics
Matches: 532, Mismatches: 94, Indels: 18
0.83 0.15 0.03
Matches are distributed among these distances:
525 3 0.01
526 105 0.20
527 415 0.78
528 9 0.02
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (525 bp):
CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCA
ACCCATGAAACGAGCGTACGGGCGCTCAGTCGACCGGAGAGGCCGACTAGAGAGGCATAATGCGC
AAGCCAAGGATCAGCCCGATCACCCTCTACGTGCTGTCAAGCCCGCTGCCGGTCCTACTACCAGA
ACCCTCGATCCAGCTGGGGTTAGACATGGAATGAACTACGTACGCCTAAACCAACCCAAGAAACG
AGCGTGCAGACATTGAGCCAGCCAGAAAGGCATAATGCACAAGCCGAGGATCGACCCGATCCCCC
TCTGCGTGCTGTCGGTCCCTCTACCACAACCCTAGATCCGGCTGGGGCATAGACATGGAATGAAC
TCCCTATACCTAAGCCAACCCACGAAATGGGCATGCAGGCACTCAACCAGTCGGAGAGGCAGAAT
GCGCAAGCCAAGGATCGGCCCGGTCCCCCTTACATGCTACCGATCCTACTATCGCAACCCTCGAT
CCGAT
Found at i:33725496 original size:159 final size:158
Alignment explanation
Indices: 33725199--33725518 Score: 394
Period size: 159 Copynumber: 2.0 Consensus size: 158
33725189 TGTCGATCTC
* * * *
33725199 GCTGTCGGTCCTACTACCAGAACCTTCGGTCCGACTGGGGCTTATACATGGAATGAACTACGTAT
1 GCTGTCGGTCCTACTACCACAACCTTCGATCCGACTGGGGCTTAGACATGGAATGAACTACCTAT
* * * * *
33725264 GCCTAAGCCAACCCACGAAATGAGCGTGCGGGCATTGAGCCATCCGGAGAGGCATAATGCGCAAG
66 GCCTAAGCCAACCCACGAAATGAGCCTGCAGGCACTCAGCCATCCGGAGAGGCAGAATGCGCAAG
* ** *
33725329 TCGGGGATCGGCCCGGACCCCCTCTGCGT
131 CCAAGGATCGGCCCGGACCCCCT-TGCAT
* * *
33725358 GCTGTCGGTCCCT-CTACCACAACCCTT-GATCTGGCTGGGGCTTAGACATGGAATGAACTCCCT
1 GCTGTCGGT-CCTACTACCACAA-CCTTCGATCCGACTGGGGCTTAGACATGGAATGAACTACCT
* * *
33725421 ATGCCTAAGCCAACCCACGAAATGGGCCTGCAGGCACTCAGCCAGT-CGGAGAGGTAGAATGTGC
64 ATGCCTAAGCCAACCCACGAAATGAGCCTGCAGGCACTCAGCCA-TCCGGAGAGGCAGAATGCGC
* *
33725485 AGGCCAAGGATCGGCCCGGTCCCCCTTGCAT
128 AAGCCAAGGATCGGCCCGGACCCCCTTGCAT
33725516 GCT
1 GCT
33725519 ACCGATCCTA
Statistics
Matches: 137, Mismatches: 21, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
158 7 0.05
159 122 0.89
160 8 0.06
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.19
Consensus pattern (158 bp):
GCTGTCGGTCCTACTACCACAACCTTCGATCCGACTGGGGCTTAGACATGGAATGAACTACCTAT
GCCTAAGCCAACCCACGAAATGAGCCTGCAGGCACTCAGCCATCCGGAGAGGCAGAATGCGCAAG
CCAAGGATCGGCCCGGACCCCCTTGCAT
Found at i:33726327 original size:26 final size:26
Alignment explanation
Indices: 33726289--33726338 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
33726279 GGCTCAAAAT
33726289 CTTAGACTGGGAATGAACTCCGTACG
1 CTTAGACTGGGAATGAACTCCGTACG
33726315 CTTAGACAT-GGAATGAACTCCGTA
1 CTTAGAC-TGGGAATGAACTCCGTA
33726339 TGCCTAAGCC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.22, G:0.24, T:0.24
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTACG
Found at i:33726750 original size:26 final size:26
Alignment explanation
Indices: 33726714--33726766 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
33726704 CTGGTCCGAT
*
33726714 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
33726740 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
33726766 C
1 C
33726767 CTAAGTCAGC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:33727278 original size:26 final size:26
Alignment explanation
Indices: 33727228--33727280 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
33727218 CTGGTCTGAT
**
33727228 CTTAGACTAGGAATGAACTTTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
33727254 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
33727280 C
1 C
33727281 CTAAATCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:33728337 original size:26 final size:26
Alignment explanation
Indices: 33728297--33728348 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
33728287 TGGTCTGATA
33728297 TTAGACTGGGAATGAACTTCGTATGC
1 TTAGACTGGGAATGAACTTCGTATGC
*
33728323 TTAGACTGGGGATGAACTTCGTATGC
1 TTAGACTGGGAATGAACTTCGTATGC
33728349 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.15, G:0.29, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTTCGTATGC
Found at i:33728646 original size:343 final size:342
Alignment explanation
Indices: 33727991--33728727 Score: 890
Period size: 343 Copynumber: 2.1 Consensus size: 342
33727981 TACACTGGAA
* * * * * *
33727991 ATGAACTCCGTATGCATAAGTCAAACCACGAAACGAGCGTACGGACGCTGAGCCGGTCGAAGACG
1 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGG-CGCTCAACCGATCGAACACG
* ** * * *
33728056 TATAATGCGTAAGCTGGGGATCAGCCCGGTCCCCTTCTGCACACTGCCAATCCCACTGCCACAAC
65 CATAATGCACAAGCTGGGGATCAGCCCGATCCCCCTCTGCACACTGCCAAGCCCACTGCCACAAC
* * *
33728121 CCTTAGTTCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGG
130 CCTTAGATCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGG
** * * * **
33728186 ATGTGCGGGTGCTCAACTGACTGGAGAGGCAAAATGCGCAAGTCAGGGATCGGCTTGGTCCCCCC
195 ATGTGCGGGCACTCAACGGACTGGAGAGGCAAAATACGCAAGTCAGGGATCGACCCGGTCCCCCC
* * * * * * * * *
33728251 TGTATGCTGTCGATCCTGCTACCGTAACCCTCGGTCTGGTCTGATATTAGACTGGGAATGAACTT
260 AGCATGCTATCAATCCTACTACCGCAACCCTCGGTCAGGTCTAATATTAGACTGGGAATGAACTC
* *
33728316 CGTATGCTTAGACTGGGG
325 CATATGCTTAGACTGCGG
* * * *
33728334 ATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGTGTACGAGCGCTCAACCGATCGAACAGG
1 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACG-GCGCTCAACCGATCGAACACG
**** * * *
33728399 CATAATGCACAAGCTGGGGATCAGCCCGATCCCCCTCTGTGTGCTGTCAGGCCCGCTGCCACAAC
65 CATAATGCACAAGCTGGGGATCAGCCCGATCCCCCTCTGCACACTGCCAAGCCCACTGCCACAAC
*
33728464 CC-TCGATCTGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACG
130 CCTTAGATC-GACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACG
* * * *
33728528 GGTGTGCGGGCACTCAGTA-GGTC-GGAGAGGCAGAATACGCAAG-CTGGGGATCGACCCGGTCC
194 GATGTGCGGGCACTCA--ACGGACTGGAGAGGCAAAATACGCAAGTC-AGGGATCGACCCGGTCC
* * * *
33728590 CCCCAGCATGCTATCAATCCTACTGCCGCAACCCTTGGTTCAGTTC-AATCTTAGACTGGGAATG
256 CCCCAGCATGCTATCAATCCTACTACCGCAACCCTCGG-TCAGGTCTAATATTAGACTGGGAATG
33728654 AACTCCATATGCTTAGACTGCGG
320 AACTCCATATGCTTAGACTGCGG
33728677 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCA
1 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTAC-GGCGCTCA
33728728 GTTGGCTAGA
Statistics
Matches: 331, Mismatches: 56, Indels: 14
0.83 0.14 0.03
Matches are distributed among these distances:
342 5 0.02
343 316 0.95
344 9 0.03
345 1 0.00
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (342 bp):
ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGCGCTCAACCGATCGAACACGC
ATAATGCACAAGCTGGGGATCAGCCCGATCCCCCTCTGCACACTGCCAAGCCCACTGCCACAACC
CTTAGATCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGA
TGTGCGGGCACTCAACGGACTGGAGAGGCAAAATACGCAAGTCAGGGATCGACCCGGTCCCCCCA
GCATGCTATCAATCCTACTACCGCAACCCTCGGTCAGGTCTAATATTAGACTGGGAATGAACTCC
ATATGCTTAGACTGCGG
Found at i:33728680 original size:26 final size:26
Alignment explanation
Indices: 33728639--33728691 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33728629 TCAGTTCAAT
33728639 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
33728665 CTTAGACTGCGG-ATGAACTCCGTATG
1 CTTAGACTG-GGAATGAACTCCATATG
33728691 C
1 C
33728692 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:33729221 original size:159 final size:157
Alignment explanation
Indices: 33728842--33729349 Score: 540
Period size: 158 Copynumber: 3.2 Consensus size: 157
33728832 CCTCAGTCCA
* * *
33728842 ACTGGGGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCACCCACGAAACGAGCGTGCGGGCA
1 ACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCAACCCACGAAACGAGCGTGCGGGCG
* * * * * *
33728907 CTGAGTCGACTGGAGAGGCATAATGCGTAAGCTGGGGATCGGCCCGATCCCTCT-TTGTGTGCTA
66 CTGAATCGAC-CGAGAGGCATAATGCGCAAGCTGGGGATCGGCTCGATCCCCCTCTT-TGTGCTG
* * * * *
33728971 TCGGTCCCGTTACCACAACCCTCGGTCTG
129 TCGATCCTGCTGCCACAACCCTCGATCTG
* * *
33729000 GCT-AGACTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGC
1 ACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAG-CAACCCACGAAACGAGCGTGCGGGC
* *
33729064 GCTGAATCGGCCAGAGAGGCATAATGCGCAAG-TCGGGGATCGACTCGATCCCCCTCTTTGTGCT
65 GCTGAATCGACC-GAGAGGCATAATGCGCAAGCT-GGGGATCGGCTCGATCCCCCTCTTTGTGCT
*
33729128 GTCGATCCTGCTGCCATAACCCTCGATCTG
128 GTCGATCCTGCTGCCACAACCCTCGATCTG
* * * * *
33729158 ATTGGGGGTTAGGCATGGAATGAACTCCGTATGCCTAAGCTAACCCATGAAACGAGCGTGCGGGG
1 ACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGC-AACCCACGAAACGAGCGTGCGGGC
* * * * * **
33729223 GCTCAACCGACCGAAGAGGTAGAATGCGCAAGCTGGGGATCGGCTCGGTCCCCC-CTGCGTGCTG
65 GCTGAATCGACCG-AGAGGCATAATGCGCAAGCTGGGGATCGGCTCGATCCCCCTCTTTGTGCTG
* * * * *
33729287 TAGATCCTGCTGTCGCAACCTTCGGTCTGG
129 TCGATCCTGCTGCCACAACCCTCGATCT-G
* ** *
33729317 TCT-GATCTTAGACATGGAATGAACTCCATATGC
1 ACTGGGGCTTAGACATGGAATGAACTCCGTATGC
33729350 TTAGACTGGT
Statistics
Matches: 291, Mismatches: 50, Indels: 18
0.81 0.14 0.05
Matches are distributed among these distances:
157 33 0.11
158 157 0.54
159 100 0.34
160 1 0.00
ACGTcount: A:0.22, C:0.28, G:0.29, T:0.21
Consensus pattern (157 bp):
ACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCAACCCACGAAACGAGCGTGCGGGCG
CTGAATCGACCGAGAGGCATAATGCGCAAGCTGGGGATCGGCTCGATCCCCCTCTTTGTGCTGTC
GATCCTGCTGCCACAACCCTCGATCTG
Found at i:33730386 original size:159 final size:158
Alignment explanation
Indices: 33730036--33730408 Score: 399
Period size: 158 Copynumber: 2.4 Consensus size: 158
33730026 AACTCCTTAT
*
33730036 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGAGGGCATTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCATTCAG
* * * **
33730101 CAGGTTGGAGAGGCAGAATGCACAAGTCGGGGATCGACCCGATCCCCCCTACGTGCTGTCAATCC
66 CAGGCTGAAGAGGCAGAATGCACAAGTCGGAGATCGACCCGATCCCCCCTACGTGCTACCAATCC
* * * * * * *
33730166 TACTGCCACAGCCCTTGGTCCGGTTTGA
131 CACTACCACAACCCTCGGTCCAGCTGGA
* * * * * * *
33730194 TCTTACAC-TGGGAATGAACTCTGTATGCATAAGCTAACCCACGAAACGAGCGTGCGGGCGTTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCATTCA
* * * * * * * **
33730258 GCCGGCTGAAGCGGCATAATGCGCAAGTCGGAGATC-AGCCCGGTCCCTCTCTGCGTGCTACCGG
65 GCAGGCTGAAGAGGCAGAATGCACAAGTCGGAGATCGA-CCCGATCCC-CCCTACGTGCTACCAA
* *
33730322 TCCCGCTACCACAACCCTCGGTCCAGCTGGG
128 TCCCACTACCACAACCCTCGGTCCAGCTGGA
* * *
33730353 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGGGCGTGCG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCG
33730409 AGAGCTCAAC
Statistics
Matches: 172, Mismatches: 39, Indels: 7
0.79 0.18 0.03
Matches are distributed among these distances:
157 2 0.01
158 91 0.53
159 78 0.45
160 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCATTCAG
CAGGCTGAAGAGGCAGAATGCACAAGTCGGAGATCGACCCGATCCCCCCTACGTGCTACCAATCC
CACTACCACAACCCTCGGTCCAGCTGGA
Found at i:33730950 original size:140 final size:140
Alignment explanation
Indices: 33730717--33730974 Score: 381
Period size: 140 Copynumber: 1.8 Consensus size: 140
33730707 TAGGTCCAGC
* * * * *
33730717 TGGGGCTTAGTCATGGAATGAACTCCGTATGCCTAAGCCAAACCATGAAACGAGCGTGTGGGCGC
1 TGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAACCACGAAACGAGCGTGCGGGCCC
* **
33730782 TGAGCCAACCGGAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTCTGCCACAACCC
66 TGAGCCAACCGGAGAGGCAGAATGCGCAAGCCGGGGATCAACCCGATCCCCCTCTGCCACAACCC
33730847 TTGGTTCGAT
131 TTGGTTCGAT
* * *
33730857 TGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAGCCACGGAACGGGCGTGCGGGCCC
1 TGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAACCACGAAACGAGCGTGCGGGCCC
* * * *
33730922 TTAGCCGACCGGAGAGGCAGAATGCGCAAGCCGGTGATCAACCCGGTCCCCCT
66 TGAGCCAACCGGAGAGGCAGAATGCGCAAGCCGGGGATCAACCCGATCCCCCT
33730975 TACGTGCTGT
Statistics
Matches: 103, Mismatches: 15, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
140 103 1.00
ACGTcount: A:0.23, C:0.30, G:0.30, T:0.16
Consensus pattern (140 bp):
TGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAACCACGAAACGAGCGTGCGGGCCC
TGAGCCAACCGGAGAGGCAGAATGCGCAAGCCGGGGATCAACCCGATCCCCCTCTGCCACAACCC
TTGGTTCGAT
Found at i:33732939 original size:317 final size:317
Alignment explanation
Indices: 33732460--33733111 Score: 726
Period size: 317 Copynumber: 2.1 Consensus size: 317
33732450 GCTTAGACAT
* * *
33732460 GGAATGAACTCCGTATGCCTAAGCCAAACCACGAAACAAGCGTGCGGGCGTTAAGCTGATCGAAA
1 GGAATGAACTCCGTATGCATAAGCCAAACCACAAAACAAGCGTGCAGGCGTTAAGCTGATCGAAA
* * * * ** * *
33732525 AGGAATAATGCGCAAGTCGGGGATCGATCGAGTCCCCCTCTATGTGTTGTCGGTCCCGCTGCTAC
66 AGGAATAATGCGCAAGTCGAGGATCGACCGAGTCCCCCTCTACGTGCTACCGGTCCCACTGCCAC
* **
33732590 AACCCTCGATCCGACTGGGTCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAA
131 AACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA
* * * * * * *
33732655 C-GAGTGTGCGGGCTCTCAATC-GATTGGAGAGGCAAAATGCGCAAGCCGGGGATCAACCCGGT-
196 CGGA-CGTGCGGGCGCTCAA-CAGACTGGAAAGGCAAAATGCACAAGCCAGGGATCAACACGGTC
* * ** * * *
33732717 CCCCTTCGTGTGCTGTCGATCCTATTGTCGCAACCCTCAGTCTGGTCTGATCTTACACTG
259 CCCCTT-GCGTACTACCGATCCTACTATCGCAACCCTCAGTCCGGTCTGATCTTACACTG
* * * *
33732777 GGAATGAACTCCGTATGCATAAGTCAACCCACAAAACGAGCGT-CTAGGCGTTGCA-CTGATCGA
1 GGAATGAACTCCGTATGCATAAGCCAAACCACAAAACAAGCGTGC-AGGCGTT-AAGCTGATCGA
* * *
33732840 AGAA-GCATAATGCGTAAG-CTGAGGATCGACCCGA-TCCCCCTCTGCGTGCTACCGGTCCCACT
64 A-AAGGAATAATGCGCAAGTC-GAGGATCGA-CCGAGTCCCCCTCTACGTGCTACCGGTCCCACT
* * * * *
33732902 GCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAATTCCCTATGCCTAAGGCAACCCA
126 GCCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
* * ** **
33732967 TGAAACGGACGTGCGGGCGCTCAACAGACTGGAAAGGCAGAATGCACAAGTTAGGGATCGGCACG
191 CGAAACGGACGTGCGGGCGCTCAACAGACTGGAAAGGCAAAATGCACAAGCCAGGGATCAACACG
* * * *
33733032 GTCCCCCTTGCGTACTACCGATCCTGCTATCTCAACCCTCTGTCCGGTCTGATCTTAGACTG
256 GTCCCCCTTGCGTACTACCGATCCTACTATCGCAACCCTCAGTCCGGTCTGATCTTACACTG
33733094 GGAATGAACTCCGTATGC
1 GGAATGAACTCCGTATGC
33733112 TTACATTGGG
Statistics
Matches: 277, Mismatches: 50, Indels: 16
0.81 0.15 0.05
Matches are distributed among these distances:
316 3 0.01
317 260 0.94
318 14 0.05
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.21
Consensus pattern (317 bp):
GGAATGAACTCCGTATGCATAAGCCAAACCACAAAACAAGCGTGCAGGCGTTAAGCTGATCGAAA
AGGAATAATGCGCAAGTCGAGGATCGACCGAGTCCCCCTCTACGTGCTACCGGTCCCACTGCCAC
AACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA
CGGACGTGCGGGCGCTCAACAGACTGGAAAGGCAAAATGCACAAGCCAGGGATCAACACGGTCCC
CCTTGCGTACTACCGATCCTACTATCGCAACCCTCAGTCCGGTCTGATCTTACACTG
Found at i:33732953 original size:159 final size:158
Alignment explanation
Indices: 33732427--33732985 Score: 515
Period size: 159 Copynumber: 3.5 Consensus size: 158
33732417 GGTCCTGCTA
* * *
33732427 CCACAACCCTTGGTTTGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAACCAC
1 CCACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAC
* * * *
33732492 GAAACAAGCGTGCGGGCGTTAAGCTGATCGAA-AAGGAATAATGCGCAAG-TCGGGGATCGA-TC
66 GAAACGAGCGTGCGGGCGTTCA-CTGATCGAAGAA-GCATAATGCGCAAGCT-GGGGATCGACCC
* * *
33732554 GAGTCCCCCTCTATGTGTTGTCGGTCCCGCTG
128 GA-TCCCCCTCTGTGTGCTGTCGGTCCCACTG
* * * * *
33732586 CTACAACCCTCGATCCGACTGGGTCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCAC
1 CCACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAC
* * * * * * * *
33732651 GAAACGAGTGTGCGGGC-TCTCAATCGATTGGAGAGGCAAAATGCGCAAGCCGGGGATCAACCCG
66 GAAACGAGCGTGCGGGCGT-TCACT-GATCGAAGAAGCATAATGCGCAAGCTGGGGATCGACCCG
* * * * *
33732715 GTCCCCTTC-GTGTGCTGTCGATCCTATTG
129 ATCCCCCTCTGTGTGCTGTCGGTCCCACTG
* * * * ** * * *
33732744 TCGCAACCCTCAGTCTGGTCT-GATCTTACAC-TGGGAATGAACTCCGTATGCATAAGTCAACCC
1 CCACAACCCTCGGTCT-GACTGGGGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCC
* * * *
33732807 ACAAAACGAGCGT-CTAGGCGTTGCACTGATCGAAGAAGCATAATGCGTAAGCTGAGGATCGACC
64 ACGAAACGAGCGTGC-GGGCGTT-CACTGATCGAAGAAGCATAATGCGCAAGCTGGGGATCGACC
* **
33732871 CGATCCCCCTCTGCGTGCTACCGGTCCCACTG
127 CGATCCCCCTCTGTGTGCTGTCGGTCCCACTG
* * * * *
33732903 CCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAATTCCCTATGCCTAAGGCAACCCAT
1 CCACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAC
33732968 GAAACG-GACGTGCGGGCG
66 GAAACGAG-CGTGCGGGCG
33732986 CTCAACAGAC
Statistics
Matches: 311, Mismatches: 74, Indels: 30
0.75 0.18 0.07
Matches are distributed among these distances:
157 2 0.01
158 118 0.38
159 186 0.60
160 5 0.02
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.21
Consensus pattern (158 bp):
CCACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAC
GAAACGAGCGTGCGGGCGTTCACTGATCGAAGAAGCATAATGCGCAAGCTGGGGATCGACCCGAT
CCCCCTCTGTGTGCTGTCGGTCCCACTG
Found at i:33733114 original size:26 final size:26
Alignment explanation
Indices: 33733085--33733140 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
33733075 CCGGTCTGAT
*
33733085 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
* *
33733111 CTTACATTGGGGATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
33733137 CTTA
1 CTTA
33733141 AGTCAACCCA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:33733550 original size:159 final size:158
Alignment explanation
Indices: 33733255--33733577 Score: 448
Period size: 159 Copynumber: 2.0 Consensus size: 158
33733245 TGCCTATCCC
* * * *
33733255 GCTGCCGGTCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCATAT
1 GCTGCCGGTCCCGCTACCACAACCCTCGGTCCGACTAGGGCTTAGACATGGAATGAACACCATAT
* * *
33733320 GCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTAAGCCGGCCGGAGAGGCATAATGCGCAAG
66 GCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTAAGCCGACCGGAGAGGCAGAATGCGCAAG
** * *
33733385 TTGGGGATCGGCCCGGTCCCCCTCTGCGT
131 CCGGGGATCGACCCGGTCCCCCT-TGCAT
* * *
33733414 GCTGTCGGTCCCGCTACCACAACCCTCGGTCTGACTAGGGCTTAGACATGGAATGAACACCCTAT
1 GCTGCCGGTCCCGCTACCACAACCCTCGGTCCGACTAGGGCTTAGACATGGAATGAACACCATAT
* * * * *
33733479 GCCTAAGCCAACCCATGAAACGAGCGTGTGGGCGCTCAGTCGACCGGAGAGGCAGAATGCGTAAG
66 GCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTAAGCCGACCGGAGAGGCAGAATGCGCAAG
* *
33733544 CCGGGGATTGACTCGGTCCCCCTTGCAT
131 CCGGGGATCGACCCGGTCCCCCTTGCAT
33733572 GCTGCC
1 GCTGCC
33733578 AATCCTGCTC
Statistics
Matches: 142, Mismatches: 22, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
158 9 0.06
159 133 0.94
ACGTcount: A:0.21, C:0.32, G:0.30, T:0.18
Consensus pattern (158 bp):
GCTGCCGGTCCCGCTACCACAACCCTCGGTCCGACTAGGGCTTAGACATGGAATGAACACCATAT
GCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTAAGCCGACCGGAGAGGCAGAATGCGCAAG
CCGGGGATCGACCCGGTCCCCCTTGCAT
Found at i:33733648 original size:26 final size:26
Alignment explanation
Indices: 33733612--33733664 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
33733602 CTAGTGCGAT
33733612 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
33733638 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
33733664 C
1 C
33733665 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:33734866 original size:26 final size:26
Alignment explanation
Indices: 33734830--33734882 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
33734820 CCGGTCCGAT
*
33734830 CTTAGGCTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* * *
33734856 CTTAGACTGGGGATGAGCTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
33734882 C
1 C
33734883 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:33735600 original size:26 final size:26
Alignment explanation
Indices: 33735562--33735614 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33735552 GGCTCAAAAT
33735562 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
33735588 CTTAGAC-ATGGAATGAACTCTGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
33735614 C
1 C
33735615 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:33736106 original size:26 final size:26
Alignment explanation
Indices: 33736065--33736115 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
33736055 GGTGCGATCT
33736065 TAGACTGGGAAGGAACTCCATATGCG
1 TAGACTGGGAAGGAACTCCATATGCG
* * *
33736091 TAGACTGGGGATGAACTCCGTATGC
1 TAGACTGGGAAGGAACTCCATATGC
33736116 CTATCCCAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.20, G:0.31, T:0.22
Consensus pattern (26 bp):
TAGACTGGGAAGGAACTCCATATGCG
Found at i:33736288 original size:26 final size:26
Alignment explanation
Indices: 33736247--33736296 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
33736237 CCGATCTGAT
*
33736247 CTTAGACCGGGAATGAACTTCGTATG
1 CTTAGACCGGGAATGAACTCCGTATG
* *
33736273 CTTAGACTGGGGATGAACTCCGTA
1 CTTAGACCGGGAATGAACTCCGTA
33736297 CGCCTAAGTC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACCGGGAATGAACTCCGTATG
Found at i:33737353 original size:26 final size:26
Alignment explanation
Indices: 33737324--33737376 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
33737314 TCAGTCTGAT
33737324 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
33737350 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
33737376 C
1 C
33737377 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:33738003 original size:347 final size:343
Alignment explanation
Indices: 33737350--33738066 Score: 827
Period size: 347 Copynumber: 2.1 Consensus size: 343
33737340 ACTCTGTATG
* * * * ** *
33737350 CTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGGGCAGGCACTCAAC
* * * *
33737415 CGACCGGAGAGGCCAGCCAGAGAGGCATAATGCGCAAGCTGGGGATAAGCCCGATCTCCCTCTGC
66 CGACCGGAGAGGCCAGCCAGAGAGGCATAATGCACAAGCCGAGGATAAGCCCGATCCCCCTCTGC
* ** *
33737480 GTGCTACCGATCCCACTATCGGTGCTGCTGGCACAACCCTTAGTCTGACTAAGGATTAGACATGG
131 ATGCTACCGATCCCACTATCGGACCTGCTGCCACAACCCTTAGTCTGACTAAGGATTAGACATGG
* ** *
33737545 AATGAACTCTGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGTTCAACCAATCGAAGAG
196 AATGAACTCTGTATGCCTAAGCCAACCCATGAAATGAGCGTGCAGGCACTCAACCAACCGAAGAG
* * * **
33737610 GCAGAATGCGCAAGGCGGGGATCGGCCCGATCCCCCTCTACATGCTGTCGATCCTGCTTTCGCAA
261 GCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCCCCTACATGCTGTCGATCCTGCTACCGCAA
* * *
33737675 CCCTTAGTGT-AGTCTAAT
326 CCCTCAGTCTGA-TCCAAT
* *
33737693 CTTAGACTGGGAATGAACACCGTATGCCTAAGTCAACCCACGAAACGAACGTACGGGCGGGCACT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG-A-G--CGGGCAGGCACT
* * * * *
33737758 CAACCGACCTGAGAGGCC-GACCAGATAGGCGTAATGCACAAGCCGAGGATCAGCCCGGTCCCCC
62 CAACCGACCGGAGAGGCCAG-CCAGAGAGGCATAATGCACAAGCCGAGGATAAGCCCGATCCCCC
** * * * * *
33737822 TCTGCATGCTGTCGATCCC-GT-TGCTGGACCTGCTGCCACAACCCTTGGT-TCGGCTGAGGCTT
126 TCTGCATGCTACCGATCCCACTAT-C-GGACCTGCTGCCACAACCCTTAGTCT-GACTAAGGATT
** *
33737884 AGACATGGAATGAACT-TCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCAGGCACTCAGTCG
188 AGACATGGAATGAACTCT-GTATGCCTAAGCCAACCCATGAAATGAGCGTGCAGGCACTCAACCA
* * * * * *
33737948 GCCGGAGAGGTAGAATGTGCAAGCCAGGGATCTGCCC-AGTCCCCCCCTGCATGCTGTCGATCCT
252 ACCGAAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGA-TCCCCCCCTACATGCTGTCGATCCT
*
33738012 GCTACCGCAACCCTCAGTCTGATCCGAT
316 GCTACCGCAACCCTCAGTCTGATCCAAT
33738040 CTTAGACTGGGAATGAACTCCGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
33738067 TTAGACATGG
Statistics
Matches: 311, Mismatches: 52, Indels: 18
0.82 0.14 0.05
Matches are distributed among these distances:
343 43 0.14
344 1 0.00
345 2 0.01
346 6 0.02
347 258 0.83
348 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (343 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGGGCAGGCACTCAAC
CGACCGGAGAGGCCAGCCAGAGAGGCATAATGCACAAGCCGAGGATAAGCCCGATCCCCCTCTGC
ATGCTACCGATCCCACTATCGGACCTGCTGCCACAACCCTTAGTCTGACTAAGGATTAGACATGG
AATGAACTCTGTATGCCTAAGCCAACCCATGAAATGAGCGTGCAGGCACTCAACCAACCGAAGAG
GCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCCCCTACATGCTGTCGATCCTGCTACCGCAA
CCCTCAGTCTGATCCAAT
Found at i:33738069 original size:26 final size:26
Alignment explanation
Indices: 33738040--33738092 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
33738030 CTGATCCGAT
*
33738040 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCATATG
*
33738066 CTTAGACATGGAATGAGCTCCATATG
1 CTTAGACATGGAATGAACTCCATATG
33738092 C
1 C
33738093 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:33738095 original size:185 final size:183
Alignment explanation
Indices: 33737880--33738447 Score: 552
Period size: 196 Copynumber: 3.0 Consensus size: 183
33737870 TTCGGCTGAG
*
33737880 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCAGG-CACTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCAGGACACTCA
* * * * * *
33737944 GTCGGCCGGAGAGGTAGAATGTGCAAGCCAGGGATCTGCCCAG-TCCCCCCCTGCATGCTGTCGA
66 G-CGGTCGGAGAGGCAGAATGCGCAAG-CAGGGATC-GACCTGATCCCCCCCTGCATGCTGTCAA
* *
33738008 TCCTGCTACCGCAACCCTCAGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTAT
128 TCCTGCTACCGCAACCCTC-GTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
* * * * **
33738065 GCTTAGACATGGAATGAGCTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGA-TCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCAGGACACTC-
* * ** * * **
33738129 ACCAGTCGGAGAGGCAGAATGCATAAGTAGGGGATCAACCTGAT-CCCCCCTGCATGCTCCCAAT
65 AGCGGTCGGAGAGGCAGAATGCGCAAGCA-GGGATCGACCTGATCCCCCCCTGCATGCTGTCAAT
* * * * *
33738193 CCTACTGTTGGTCCTACTATCGTAAACCTCGATCTGGTCTGATCTTAGACTAGGAATGAACTTCA
129 -C--C---T-G--CTAC---CGCAACCCTCG-TCTGGTCTGATCTTAGACTGGGAATGAACTCCG
33738258 TAT
181 TAT
* * *
33738261 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAATGAACGTG-TGGACACTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCAGGACACTCA
* * *
33738325 GCTGGTCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCTGATCCCCCCCTGCGTGCTGTCAAT
66 GC-GGTCGGAGAGGCAGAATGCGCAAG-CAGGGATCGACCTGATCCCCCCCTGCATGCTGTCAAT
* * * * *
33738390 CCTACTACCGCAACCCTCGGTTTGGTCTGATCATATACTGGGAATGAATTCCGTAT
129 CCTGCTACCGCAACCCTC-GTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
33738446 GC
1 GC
33738448 CTAAGTCAAC
Statistics
Matches: 305, Mismatches: 56, Indels: 44
0.75 0.14 0.11
Matches are distributed among these distances:
184 21 0.07
185 121 0.40
186 3 0.01
187 1 0.00
188 4 0.01
190 1 0.00
191 2 0.01
193 4 0.01
194 1 0.00
195 6 0.02
196 124 0.41
197 17 0.06
ACGTcount: A:0.26, C:0.27, G:0.25, T:0.22
Consensus pattern (183 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCAGGACACTCA
GCGGTCGGAGAGGCAGAATGCGCAAGCAGGGATCGACCTGATCCCCCCCTGCATGCTGTCAATCC
TGCTACCGCAACCCTCGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
Found at i:33738287 original size:26 final size:26
Alignment explanation
Indices: 33738236--33738288 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
33738226 CTGGTCTGAT
*
33738236 CTTAGACTAGGAATGAACTTCATATG
1 CTTAGACTAGGAATGAACTCCATATG
*
33738262 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCATATG
33738288 C
1 C
33738289 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Done.