Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 37 of 402
Found at i:7497082 original size:14 final size:13
Alignment explanation
Indices: 7497054--7497078 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7497044 TTTTTTTTCT
7497054 TTTTTTTTCATCA
1 TTTTTTTTCATCA
7497067 TTTTTTTTCATC
1 TTTTTTTTCATC
7497079 CATTGTTGAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.16, G:0.00, T:0.72
Consensus pattern (13 bp):
TTTTTTTTCATCA
Found at i:7501027 original size:60 final size:59
Alignment explanation
Indices: 7500875--7501391 Score: 795
Period size: 57 Copynumber: 8.7 Consensus size: 59
7500865 ATTTTTTTTT
* *
7500875 AGGAAAATTGATACTTTCAACTTTTCCCCAAAAATA-TTTTTTGGAAATTTCGATTTTC-A
1 AGGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTGAAATTT--ATTTTCTA
7500934 AGGAAAATTGATACTTTCAACTTTTCCC-AAAAATACTTTTTTTTGAAATTTATTTTCTA
1 AGGAAAATTGATACTTTCAACTTTTCCCTAAAAATA-TTTTTTTTGAAATTTATTTTCTA
7500993 AGGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTTGAAATTTA-TTTCTA
1 AGGAAAATTGATACTTTCAACTTTTCCCTAAAAATA-TTTTTTTTGAAATTTATTTTCTA
*
7501052 AGGAAAATTGATACTTTCAACTTTTCCCTAAAAATA-TTTTTTGGAAATTTA-TTTCTA
1 AGGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTGAAATTTATTTTCTA
*
7501109 AGGAAAATTGATACTTTCAACTTTTCCCTAAAAATA-TTTTTTTGAAATTT-TTTTCTG
1 AGGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTGAAATTTATTTTCTA
* *
7501166 AGGAAAATTGATACTTTCAACTTTTCCCCAAAAATA-TTTTTTGGAAATTTA-TTTCTA
1 AGGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTGAAATTTATTTTCTA
7501223 AGGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTATTTTGGAAATTTA-TTTCTA
1 AGGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTT-TTTT-GAAATTTATTTTCTA
7501283 AGGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTATTTTGGAAATTTATTTTTCTTTTA
1 AGGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTT-TTTT-GAAATTTA-TTTTC---TA
7501348 AGGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTT
1 AGGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTT
7501392 TGGAATTTTT
Statistics
Matches: 434, Mismatches: 10, Indels: 23
0.93 0.02 0.05
Matches are distributed among these distances:
57 162 0.37
58 16 0.04
59 102 0.24
60 104 0.24
62 4 0.01
64 4 0.01
65 42 0.10
ACGTcount: A:0.34, C:0.13, G:0.08, T:0.45
Consensus pattern (59 bp):
AGGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTGAAATTTATTTTCTA
Found at i:7502527 original size:29 final size:30
Alignment explanation
Indices: 7502487--7502557 Score: 78
Period size: 29 Copynumber: 2.4 Consensus size: 30
7502477 ATTACACAAA
*
7502487 AAATAATAATAATATATAA-CTGTAT-AAAT
1 AAATAAT-ATAATATATAATCTGAATAAAAT
*
7502516 AAATACATATAA-ATCTAATCTGAATAAAAT
1 AAATA-ATATAATATATAATCTGAATAAAAT
7502546 AAATAATA-AATA
1 AAATAATATAATA
7502558 AAGATATACA
Statistics
Matches: 36, Mismatches: 2, Indels: 8
0.78 0.04 0.17
Matches are distributed among these distances:
28 7 0.19
29 18 0.50
30 11 0.31
ACGTcount: A:0.61, C:0.06, G:0.03, T:0.31
Consensus pattern (30 bp):
AAATAATATAATATATAATCTGAATAAAAT
Found at i:7502788 original size:25 final size:26
Alignment explanation
Indices: 7502741--7502797 Score: 80
Period size: 26 Copynumber: 2.2 Consensus size: 26
7502731 TTTCTCGAAA
*
7502741 ATTTCCCAAAAATTTCCAGAAAAATT
1 ATTTGCCAAAAATTTCCAGAAAAATT
* *
7502767 TTTTGCCAAAAATTTCTA-AAAAATT
1 ATTTGCCAAAAATTTCCAGAAAAATT
7502792 ATTTGC
1 ATTTGC
7502798 GATCCCTACA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
25 12 0.44
26 15 0.56
ACGTcount: A:0.42, C:0.16, G:0.05, T:0.37
Consensus pattern (26 bp):
ATTTGCCAAAAATTTCCAGAAAAATT
Found at i:7503260 original size:16 final size:16
Alignment explanation
Indices: 7503231--7503281 Score: 56
Period size: 16 Copynumber: 3.4 Consensus size: 16
7503221 AATTATTATA
7503231 ATATAA-TA-ATAAAT
1 ATATAACTATATAAAT
7503245 ATATAACTATATAAAT
1 ATATAACTATATAAAT
* *
7503261 ATATTAC-ATATAGAT
1 ATATAACTATATAAAT
7503276 AT-TAAC
1 ATATAAC
7503282 AGAGAAAAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
14 9 0.28
15 11 0.34
16 12 0.38
ACGTcount: A:0.55, C:0.06, G:0.02, T:0.37
Consensus pattern (16 bp):
ATATAACTATATAAAT
Found at i:7503448 original size:20 final size:20
Alignment explanation
Indices: 7503423--7503503 Score: 135
Period size: 20 Copynumber: 4.0 Consensus size: 20
7503413 GGGCTTACCC
7503423 ATTTGGGCCAGGCCCAATTG
1 ATTTGGGCCAGGCCCAATTG
*
7503443 ATTTGGGCCAGGCCTAATTG
1 ATTTGGGCCAGGCCCAATTG
7503463 ATTTGGGCCAGGCCCAATTG
1 ATTTGGGCCAGGCCCAATTG
*
7503483 ATTTGGGCCTGGACCCAATTG
1 ATTTGGGCCAGG-CCCAATTG
7503504 GGTGTCTACA
Statistics
Matches: 57, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
20 49 0.86
21 8 0.14
ACGTcount: A:0.20, C:0.23, G:0.30, T:0.27
Consensus pattern (20 bp):
ATTTGGGCCAGGCCCAATTG
Found at i:7505105 original size:25 final size:25
Alignment explanation
Indices: 7505068--7505130 Score: 83
Period size: 25 Copynumber: 2.5 Consensus size: 25
7505058 ATACCATAAA
*
7505068 CCTTAAACTTTAAACCCTAAACC-C
1 CCTTAAACCTTAAACCCTAAACCAC
*
7505092 CTCTTAAACCTTAAATCCTAAACCAC
1 C-CTTAAACCTTAAACCCTAAACCAC
7505118 CCTTTAAACCTTA
1 CC-TTAAACCTTA
7505131 GACCACCTAC
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
24 1 0.03
25 21 0.62
26 12 0.35
ACGTcount: A:0.37, C:0.35, G:0.00, T:0.29
Consensus pattern (25 bp):
CCTTAAACCTTAAACCCTAAACCAC
Found at i:7505168 original size:19 final size:19
Alignment explanation
Indices: 7505146--7505197 Score: 61
Period size: 19 Copynumber: 2.7 Consensus size: 19
7505136 CCTACCAAAT
*
7505146 CCTAAATCACCTTCTAAGC
1 CCTAAATCACCTTCTAAAC
*
7505165 CCTAAACCA-CTTCCTAAAC
1 CCTAAATCACCTT-CTAAAC
*
7505184 CTTAAATCACCTTC
1 CCTAAATCACCTTC
7505198 CAAAACCAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
18 3 0.11
19 21 0.78
20 3 0.11
ACGTcount: A:0.33, C:0.38, G:0.02, T:0.27
Consensus pattern (19 bp):
CCTAAATCACCTTCTAAAC
Found at i:7505174 original size:38 final size:38
Alignment explanation
Indices: 7505103--7505210 Score: 98
Period size: 38 Copynumber: 2.9 Consensus size: 38
7505093 TCTTAAACCT
* * *
7505103 TAAATCCTAAACCACCCTT-TAAACCTTAGACCACCTACC
1 TAAATCCTAAATCA-CCTTCTAAACCCTAAACCA-CTACC
* *
7505142 -AAATCCTAAATCACCTTCTAAGCCCTAAACCACTTCC
1 TAAATCCTAAATCACCTTCTAAACCCTAAACCACTACC
* *
7505179 TAAA-CCTTAAATCACCTTCCAAAACC-AAACCA
1 TAAATCC-TAAATCACCTTCTAAACCCTAAACCA
7505211 ACCCTTAAAC
Statistics
Matches: 58, Mismatches: 8, Indels: 8
0.78 0.11 0.11
Matches are distributed among these distances:
37 16 0.28
38 42 0.72
ACGTcount: A:0.39, C:0.37, G:0.02, T:0.22
Consensus pattern (38 bp):
TAAATCCTAAATCACCTTCTAAACCCTAAACCACTACC
Found at i:7506207 original size:21 final size:21
Alignment explanation
Indices: 7506183--7506225 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
7506173 ATCCAATTTG
7506183 AAATTCATTAGAAAT-TAATTA
1 AAATTCATTA-AAATGTAATTA
**
7506204 AAATTTTTTAAAATGTAATTA
1 AAATTCATTAAAATGTAATTA
7506225 A
1 A
7506226 GATGAGATTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 4 0.21
21 15 0.79
ACGTcount: A:0.51, C:0.02, G:0.05, T:0.42
Consensus pattern (21 bp):
AAATTCATTAAAATGTAATTA
Found at i:7506281 original size:16 final size:16
Alignment explanation
Indices: 7506262--7506294 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
7506252 TTTAATTTTA
7506262 AAATGA-TTGAAATTTG
1 AAATGATTTG-AATTTG
7506278 AAATGATTTGAATTTG
1 AAATGATTTGAATTTG
7506294 A
1 A
7506295 TATATCCTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 13 0.81
17 3 0.19
ACGTcount: A:0.42, C:0.00, G:0.18, T:0.39
Consensus pattern (16 bp):
AAATGATTTGAATTTG
Found at i:7507590 original size:11 final size:11
Alignment explanation
Indices: 7507574--7507598 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
7507564 CTTGTTTTAT
7507574 TTGTTTAGATC
1 TTGTTTAGATC
7507585 TTGTTTAGATC
1 TTGTTTAGATC
7507596 TTG
1 TTG
7507599 CTTGATAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.16, C:0.08, G:0.20, T:0.56
Consensus pattern (11 bp):
TTGTTTAGATC
Found at i:7510543 original size:24 final size:26
Alignment explanation
Indices: 7510507--7510557 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
7510497 ATGATAATAA
*
7510507 TTTATCTTGTATAAAT-GAACATATT
1 TTTATCTTGTATAAATAGAACAAATT
*
7510532 TTTAT-TTTTATAAATAGAACAAATT
1 TTTATCTTGTATAAATAGAACAAATT
7510557 T
1 T
7510558 AAACTTGTGC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 9 0.39
25 14 0.61
ACGTcount: A:0.39, C:0.06, G:0.06, T:0.49
Consensus pattern (26 bp):
TTTATCTTGTATAAATAGAACAAATT
Found at i:7510627 original size:24 final size:24
Alignment explanation
Indices: 7510600--7510648 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
7510590 ATGTACAAAC
*
7510600 AAATTGTCAATTGTATAAATGAAA
1 AAATTATCAATTGTATAAATGAAA
* * *
7510624 AAATTATGATTTGTATTAATGAAA
1 AAATTATCAATTGTATAAATGAAA
7510648 A
1 A
7510649 TATATAGAAT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.49, C:0.02, G:0.12, T:0.37
Consensus pattern (24 bp):
AAATTATCAATTGTATAAATGAAA
Found at i:7513993 original size:27 final size:28
Alignment explanation
Indices: 7513954--7514014 Score: 70
Period size: 28 Copynumber: 2.2 Consensus size: 28
7513944 GTGCCAAAGG
* **
7513954 GGTTTAATCAAA-GGTTTTGGGGTTCAA
1 GGTTTAATAAAAGGGTTTTAAGGTTCAA
*
7513981 GGTTTGATAAAAGGGTTTTAAGGTTCAA
1 GGTTTAATAAAAGGGTTTTAAGGTTCAA
*
7514009 GCTTTA
1 GGTTTA
7514015 TCCTCTATAG
Statistics
Matches: 27, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
27 10 0.37
28 17 0.63
ACGTcount: A:0.28, C:0.07, G:0.28, T:0.38
Consensus pattern (28 bp):
GGTTTAATAAAAGGGTTTTAAGGTTCAA
Found at i:7516900 original size:11 final size:12
Alignment explanation
Indices: 7516874--7516902 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
7516864 GAGTGAAAAT
7516874 TTTCTTATACAA
1 TTTCTTATACAA
7516886 TTTCTTATA-AA
1 TTTCTTATACAA
7516897 TTTCTT
1 TTTCTT
7516903 GCCTCTTGAG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 8 0.47
12 9 0.53
ACGTcount: A:0.28, C:0.14, G:0.00, T:0.59
Consensus pattern (12 bp):
TTTCTTATACAA
Found at i:7520497 original size:25 final size:24
Alignment explanation
Indices: 7520458--7520514 Score: 98
Period size: 25 Copynumber: 2.4 Consensus size: 24
7520448 AAAACCATTA
7520458 TTGACA-TTATGTTCTTTATGAAT
1 TTGACATTTATGTTCTTTATGAAT
7520481 TTGACATTCTATGTTCTTTATGAAT
1 TTGACATT-TATGTTCTTTATGAAT
7520506 TTGACATTT
1 TTGACATTT
7520515 TAAGCTCTTT
Statistics
Matches: 32, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
23 6 0.19
24 2 0.06
25 24 0.75
ACGTcount: A:0.25, C:0.11, G:0.12, T:0.53
Consensus pattern (24 bp):
TTGACATTTATGTTCTTTATGAAT
Found at i:7520523 original size:25 final size:25
Alignment explanation
Indices: 7520470--7520524 Score: 83
Period size: 25 Copynumber: 2.2 Consensus size: 25
7520460 GACATTATGT
* *
7520470 TCTTTATGAATTTGACATTCTATGT
1 TCTTTATGAATTTGACATTCTAAGC
*
7520495 TCTTTATGAATTTGACATTTTAAGC
1 TCTTTATGAATTTGACATTCTAAGC
7520520 TCTTT
1 TCTTT
7520525 TAAGTACTAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.24, C:0.13, G:0.11, T:0.53
Consensus pattern (25 bp):
TCTTTATGAATTTGACATTCTAAGC
Found at i:7527555 original size:11 final size:11
Alignment explanation
Indices: 7527530--7527590 Score: 61
Period size: 11 Copynumber: 5.5 Consensus size: 11
7527520 ATAATCACCT
7527530 AATCAATATCTA
1 AATCAATATC-A
7527542 AATCAATATCA
1 AATCAATATCA
*
7527553 AATCAATATCT
1 AATCAATATCA
* * *
7527564 AGT-ACTCTCTA
1 AATCAATATC-A
7527575 AATCAATATCA
1 AATCAATATCA
7527586 AATCA
1 AATCA
7527591 GTCTAGAATA
Statistics
Matches: 39, Mismatches: 8, Indels: 5
0.75 0.15 0.10
Matches are distributed among these distances:
10 4 0.10
11 21 0.54
12 14 0.36
ACGTcount: A:0.48, C:0.20, G:0.02, T:0.31
Consensus pattern (11 bp):
AATCAATATCA
Found at i:7539561 original size:11 final size:12
Alignment explanation
Indices: 7539536--7539565 Score: 53
Period size: 11 Copynumber: 2.6 Consensus size: 12
7539526 ATAATCACCT
7539536 AATCAATATTTA
1 AATCAATATTTA
7539548 AATCAATA-TTA
1 AATCAATATTTA
7539559 AATCAAT
1 AATCAAT
7539566 GTATAATATT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 10 0.56
12 8 0.44
ACGTcount: A:0.53, C:0.10, G:0.00, T:0.37
Consensus pattern (12 bp):
AATCAATATTTA
Found at i:7539583 original size:33 final size:33
Alignment explanation
Indices: 7539546--7539608 Score: 90
Period size: 33 Copynumber: 1.9 Consensus size: 33
7539536 AATCAATATT
* * *
7539546 TAAATCAATATTAAATCAATGTATAATATTCTC
1 TAAATCAATATCAAATCAATCTAGAATATTCTC
*
7539579 TAAATTAATATCAAATCAATCTAGAATATT
1 TAAATCAATATCAAATCAATCTAGAATATT
7539609 ATTAGAATAT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
33 26 1.00
ACGTcount: A:0.48, C:0.11, G:0.03, T:0.38
Consensus pattern (33 bp):
TAAATCAATATCAAATCAATCTAGAATATTCTC
Found at i:7539623 original size:22 final size:22
Alignment explanation
Indices: 7539598--7539670 Score: 82
Period size: 22 Copynumber: 3.5 Consensus size: 22
7539588 ATCAAATCAA
*
7539598 TCTAGAATATTATTAGAATATT
1 TCTAGAATATTATCAGAATATT
*
7539620 TCTAGAATAATATCATG-A-A--
1 TCTAGAATATTATCA-GAATATT
7539639 TCTAGAATATTATCAGAATATT
1 TCTAGAATATTATCAGAATATT
*
7539661 ACTAGAATAT
1 TCTAGAATAT
7539671 CATTGACAAA
Statistics
Matches: 42, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
18 1 0.02
19 15 0.36
20 1 0.02
21 1 0.02
22 23 0.55
23 1 0.02
ACGTcount: A:0.44, C:0.08, G:0.10, T:0.38
Consensus pattern (22 bp):
TCTAGAATATTATCAGAATATT
Found at i:7539644 original size:19 final size:18
Alignment explanation
Indices: 7539620--7539657 Score: 58
Period size: 19 Copynumber: 2.1 Consensus size: 18
7539610 TTAGAATATT
7539620 TCTAGAATAATATCATGAA
1 TCTAGAATAATATCA-GAA
*
7539639 TCTAGAATATTATCAGAA
1 TCTAGAATAATATCAGAA
7539657 T
1 T
7539658 ATTACTAGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 4 0.22
19 14 0.78
ACGTcount: A:0.45, C:0.11, G:0.11, T:0.34
Consensus pattern (18 bp):
TCTAGAATAATATCAGAA
Found at i:7539644 original size:41 final size:42
Alignment explanation
Indices: 7539570--7539669 Score: 132
Period size: 41 Copynumber: 2.4 Consensus size: 42
7539560 ATCAATGTAT
*
7539570 AATATTCTCTA-AATTAATATCAAATCAATCTAGAATATTATTAG
1 AATATT-TCTAGAA-TAATATC-AATCAATCTAGAATATTATCAG
*
7539614 AATATTTCTAGAATAATATC-ATGAATCTAGAATATTATCAG
1 AATATTTCTAGAATAATATCAATCAATCTAGAATATTATCAG
*
7539655 AATATTACTAGAATA
1 AATATTTCTAGAATA
7539670 TCATTGACAA
Statistics
Matches: 52, Mismatches: 3, Indels: 5
0.87 0.05 0.08
Matches are distributed among these distances:
41 33 0.63
43 11 0.21
44 8 0.15
ACGTcount: A:0.46, C:0.10, G:0.07, T:0.37
Consensus pattern (42 bp):
AATATTTCTAGAATAATATCAATCAATCTAGAATATTATCAG
Found at i:7541482 original size:23 final size:23
Alignment explanation
Indices: 7541456--7541590 Score: 124
Period size: 21 Copynumber: 6.2 Consensus size: 23
7541446 GTAGCATTGA
7541456 ATAATATATCATGCAATAATAAT
1 ATAATATATCATGCAATAATAAT
* *
7541479 ATAATATATCATGTAATAATATT
1 ATAATATATCATGCAATAATAAT
*
7541502 ATAATATATCATGTAAT-A-AAT
1 ATAATATATCATGCAATAATAAT
* *
7541523 ATAA-ACTATCATACAAT--TAAG
1 ATAATA-TATCATGCAATAATAAT
*
7541544 ATAAAATATCATGCAATAATAA-
1 ATAATATATCATGCAATAATAAT
* * *
7541566 GTAATA-ACCATGCAAAAATAA-
1 ATAATATATCATGCAATAATAAT
7541587 ATAA
1 ATAA
7541591 ACAAAAACAT
Statistics
Matches: 95, Mismatches: 12, Indels: 12
0.80 0.10 0.10
Matches are distributed among these distances:
20 1 0.01
21 47 0.49
22 6 0.06
23 41 0.43
ACGTcount: A:0.54, C:0.09, G:0.05, T:0.32
Consensus pattern (23 bp):
ATAATATATCATGCAATAATAAT
Found at i:7541710 original size:15 final size:14
Alignment explanation
Indices: 7541662--7541721 Score: 52
Period size: 15 Copynumber: 4.3 Consensus size: 14
7541652 AAAAGATAAG
*
7541662 AAATAAAATAAAACA
1 AAATTAAATAAAA-A
*
7541677 AAA--AAATTAAAA
1 AAATTAAATAAAAA
* *
7541689 CAATTAAATCAAATA
1 AAATTAAAT-AAAAA
7541704 AAATTAAATAAAAA
1 AAATTAAATAAAAA
7541718 AAAT
1 AAAT
7541722 GCACTACAAA
Statistics
Matches: 36, Mismatches: 6, Indels: 7
0.73 0.12 0.14
Matches are distributed among these distances:
12 3 0.08
13 7 0.19
14 12 0.33
15 14 0.39
ACGTcount: A:0.75, C:0.05, G:0.00, T:0.20
Consensus pattern (14 bp):
AAATTAAATAAAAA
Found at i:7542176 original size:18 final size:19
Alignment explanation
Indices: 7542150--7542208 Score: 63
Period size: 17 Copynumber: 3.2 Consensus size: 19
7542140 AAACCCAGAA
*
7542150 AAATCTCCAA-AAAAACCT
1 AAATATCCAATAAAAACCT
7542168 AAATATCCAATTAAAAACCT
1 AAATATCCAA-TAAAAACCT
7542188 -AA-AT-CAATTAAAAACCT
1 AAATATCCAA-TAAAAACCT
7542205 AAAT
1 AAAT
7542209 CAATTAAAAA
Statistics
Matches: 36, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
17 13 0.36
18 13 0.36
19 2 0.06
20 8 0.22
ACGTcount: A:0.58, C:0.20, G:0.00, T:0.22
Consensus pattern (19 bp):
AAATATCCAATAAAAACCT
Found at i:7542197 original size:17 final size:17
Alignment explanation
Indices: 7542160--7542220 Score: 95
Period size: 17 Copynumber: 3.4 Consensus size: 17
7542150 AAATCTCCAA
7542160 AAAAACCTAAATATCCAATT
1 AAAAACCT-AA-AT-CAATT
7542180 AAAAACCTAAATCAATT
1 AAAAACCTAAATCAATT
7542197 AAAAACCTAAATCAATT
1 AAAAACCTAAATCAATT
7542214 AAAAACC
1 AAAAACC
7542221 CAAGCCTAAA
Statistics
Matches: 41, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
17 29 0.71
18 2 0.05
19 2 0.05
20 8 0.20
ACGTcount: A:0.59, C:0.20, G:0.00, T:0.21
Consensus pattern (17 bp):
AAAAACCTAAATCAATT
Found at i:7542228 original size:23 final size:23
Alignment explanation
Indices: 7542202--7542253 Score: 104
Period size: 23 Copynumber: 2.3 Consensus size: 23
7542192 CAATTAAAAA
7542202 CCTAAATCAATTAAAAACCCAAG
1 CCTAAATCAATTAAAAACCCAAG
7542225 CCTAAATCAATTAAAAACCCAAG
1 CCTAAATCAATTAAAAACCCAAG
7542248 CCTAAA
1 CCTAAA
7542254 ACCAAATCAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.52, C:0.27, G:0.04, T:0.17
Consensus pattern (23 bp):
CCTAAATCAATTAAAAACCCAAG
Found at i:7542270 original size:24 final size:23
Alignment explanation
Indices: 7542202--7542270 Score: 84
Period size: 23 Copynumber: 3.0 Consensus size: 23
7542192 CAATTAAAAA
* *
7542202 CCTAAATCAATTAAAAACCCAAG
1 CCTAAACCAAATAAAAACCCAAG
* *
7542225 CCTAAATCAATTAAAAACCCAAG
1 CCTAAACCAAATAAAAACCCAAG
*
7542248 CCTAAAACCAAATCAAAACCCAA
1 CCT-AAACCAAATAAAAACCCAA
7542271 AGCAACTGAA
Statistics
Matches: 42, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
23 26 0.62
24 16 0.38
ACGTcount: A:0.54, C:0.29, G:0.03, T:0.14
Consensus pattern (23 bp):
CCTAAACCAAATAAAAACCCAAG
Found at i:7542700 original size:34 final size:34
Alignment explanation
Indices: 7542662--7542735 Score: 80
Period size: 34 Copynumber: 2.2 Consensus size: 34
7542652 TTTGTTTTTT
*
7542662 TTTTTATTTTCTTT-TTTGTAATGAGACTTTTGAC
1 TTTTTATTTT-TTTATTTGTAATGAGACTTTTAAC
* * *
7542696 TTTTT-TTTTTTTACTTTTTTATGAGATTTTTAAC
1 TTTTTATTTTTTTA-TTTGTAATGAGACTTTTAAC
7542730 TTTTTA
1 TTTTTA
7542736 AAAAATAAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
32 3 0.09
33 4 0.12
34 26 0.79
ACGTcount: A:0.18, C:0.07, G:0.08, T:0.68
Consensus pattern (34 bp):
TTTTTATTTTTTTATTTGTAATGAGACTTTTAAC
Found at i:7542772 original size:12 final size:12
Alignment explanation
Indices: 7542757--7542783 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
7542747 AAATTAAACC
7542757 AAAAATAAAATT
1 AAAAATAAAATT
7542769 AAAAATAAAATT
1 AAAAATAAAATT
7542781 AAA
1 AAA
7542784 GTTTTCCCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (12 bp):
AAAAATAAAATT
Found at i:7542778 original size:17 final size:17
Alignment explanation
Indices: 7542736--7542779 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 17
7542726 TAACTTTTTA
7542736 AAAAAT-AAATAAAATT
1 AAAAATAAAATAAAATT
*
7542752 AAACCA-AAAATAAAATT
1 AAA-AATAAAATAAAATT
7542769 AAAAATAAAAT
1 AAAAATAAAAT
7542780 TAAAGTTTTC
Statistics
Matches: 23, Mismatches: 2, Indels: 5
0.77 0.07 0.17
Matches are distributed among these distances:
16 4 0.17
17 19 0.83
ACGTcount: A:0.75, C:0.05, G:0.00, T:0.20
Consensus pattern (17 bp):
AAAAATAAAATAAAATT
Found at i:7543740 original size:35 final size:35
Alignment explanation
Indices: 7543701--7543803 Score: 102
Period size: 35 Copynumber: 2.9 Consensus size: 35
7543691 TTTACAAGGG
*
7543701 TTTTA-ATTTCTCAAGAATTCAAAGATTCACAAGAC
1 TTTTAGATTT-TCAAGAATTCAAAGATTCACAAGAA
* * * * *
7543736 TTTTAGATTTGCAAAAATTCAAAAATTCGCAACAA
1 TTTTAGATTTTCAAGAATTCAAAGATTCACAAGAA
* *
7543771 TTTTAGATTTTTAAGAATTGC-AAGATTCTCAAG
1 TTTTAGATTTTCAAGAATT-CAAAGATTCACAAG
7543804 TTTTTCAAAT
Statistics
Matches: 54, Mismatches: 12, Indels: 4
0.77 0.17 0.06
Matches are distributed among these distances:
35 49 0.91
36 5 0.09
ACGTcount: A:0.40, C:0.14, G:0.11, T:0.36
Consensus pattern (35 bp):
TTTTAGATTTTCAAGAATTCAAAGATTCACAAGAA
Found at i:7545491 original size:23 final size:20
Alignment explanation
Indices: 7545450--7545501 Score: 61
Period size: 22 Copynumber: 2.5 Consensus size: 20
7545440 TTATTTTAGA
7545450 TTTTTTTTATTTCATATTTAT
1 TTTTTTTTATTTCATATTT-T
7545471 CTTTTTTTTATTATC-TGATTTT
1 -TTTTTTTTATT-TCAT-ATTTT
7545493 TTTTTTTTA
1 TTTTTTTTA
7545502 AAAAAGGAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
21 9 0.32
22 13 0.46
23 6 0.21
ACGTcount: A:0.15, C:0.06, G:0.02, T:0.77
Consensus pattern (20 bp):
TTTTTTTTATTTCATATTTT
Found at i:7545674 original size:22 final size:22
Alignment explanation
Indices: 7545649--7545732 Score: 91
Period size: 22 Copynumber: 3.7 Consensus size: 22
7545639 ATGGAGGAGA
7545649 AATCCGAATAGGAGAGAAGAAG
1 AATCCGAATAGGAGAGAAGAAG
*
7545671 AATCCGAATAGGAGACGGAAAAAAAG
1 AATCCGAATAGGAGA--G--AAGAAG
**
7545697 AA-GAGAA-AGGAGAGAAGAAG
1 AATCCGAATAGGAGAGAAGAAG
7545717 AATCCGAATAGGAGAG
1 AATCCGAATAGGAGAG
7545733 GAAAAAAAAT
Statistics
Matches: 50, Mismatches: 6, Indels: 12
0.74 0.09 0.18
Matches are distributed among these distances:
20 7 0.14
21 3 0.06
22 23 0.46
24 7 0.14
25 3 0.06
26 7 0.14
ACGTcount: A:0.52, C:0.08, G:0.32, T:0.07
Consensus pattern (22 bp):
AATCCGAATAGGAGAGAAGAAG
Found at i:7548084 original size:118 final size:116
Alignment explanation
Indices: 7547954--7548305 Score: 485
Period size: 118 Copynumber: 3.0 Consensus size: 116
7547944 TAATTTCAAG
* * *
7547954 AAAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTT-TTTAAAAAATAAA-TTAAAAAAAT
1 AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTT-AAAAATAAATTTAAAAAAA-
7548017 GATTTTTGAAGGAAAGTTGAAAGTATCAATTTCCCTCAAAATTAAAGTTTCCAAA
64 GATTTTTGAAGGAAAGTTGAAAGTATCAATTTCCCTCAAAATTAAAGTTTCC--A
7548072 AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAAAAA
1 AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAA-TTT-AAAAAAA
* * *
7548137 AAGTTTTTGAGGGAAAGTTGAAAGTATCAATTTCCCTCGAAATTAAAGTTTCCA
64 GA-TTTTTGAAGGAAAGTTGAAAGTATCAATTTCCCTCAAAATTAAAGTTTCCA
* *
7548191 AAAAGAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAAAAG
1 AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAA-TTTAAAAAAAG
* * * *
7548256 GTTTTTG-AGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAAGTTT
65 ATTTTTGAAGG-AAAGTTGAAAGTATCAA-TTTCCCTCAAAATTAAAGTTT
7548306 TGCAAGTGAA
Statistics
Matches: 212, Mismatches: 15, Indels: 14
0.88 0.06 0.06
Matches are distributed among these distances:
116 2 0.01
117 23 0.11
118 70 0.33
119 59 0.28
120 3 0.01
121 55 0.26
ACGTcount: A:0.45, C:0.07, G:0.14, T:0.34
Consensus pattern (116 bp):
AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTAAAAAAAGA
TTTTTGAAGGAAAGTTGAAAGTATCAATTTCCCTCAAAATTAAAGTTTCCA
Found at i:7548193 original size:60 final size:60
Alignment explanation
Indices: 7547954--7548305 Score: 345
Period size: 60 Copynumber: 6.0 Consensus size: 60
7547944 TAATTTCAAG
* ** * *
7547954 AAAAAAATA-TTTTTGAGAAAAAGTTGAAAGTATCAATTTT-TTTAAAAAATAAA--TT--
1 AAAAAAAAAGTTTTTGAGGGAAAGTTGAAAGTATCAATTTTCCTT-AAAATTAAAGTTTCC
* * * *
7548009 -AAAAAAATGATTTTTGAAGGAAAGTTGAAAGTATCAATTTCCCTCAAAATTAAAGTTTCC
1 AAAAAAAAAG-TTTTTGAGGGAAAGTTGAAAGTATCAATTTTCCTTAAAATTAAAGTTTCC
* * *
7548069 AAAAAAAAAATATTTTTG-GGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAA-TTTTC
1 -AAAAAAAAA-GTTTTTGAGGG-AAAGTTGAAAGTATCAATTTTCCTTAAAATTAAAGTTTCC
* **
7548130 AAAAAAAAAGTTTTTGAGGGAAAGTTGAAAGTATCAATTTCCCTCGAAATTAAAGTTTCC
1 AAAAAAAAAGTTTTTGAGGGAAAGTTGAAAGTATCAATTTTCCTTAAAATTAAAGTTTCC
* * *
7548190 AAAAAGAATA-TTTTTG-GGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAA-TTTTC
1 AAAAA-AAAAGTTTTTGAGGG-AAAGTTGAAAGTATCAATTTTCCTTAAAATTAAAGTTTCC
* * *
7548249 --AAAAAAGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAAGTTT
1 AAAAAAAAAGTTTTTGAGGGAAAGTTGAAAGTATCAATTTTCCTT-AAAATTAAAGTTT
7548306 TGCAAGTGAA
Statistics
Matches: 245, Mismatches: 33, Indels: 34
0.79 0.11 0.11
Matches are distributed among these distances:
54 6 0.02
56 37 0.15
57 35 0.14
58 11 0.04
59 46 0.19
60 57 0.23
61 9 0.04
62 44 0.18
ACGTcount: A:0.45, C:0.07, G:0.14, T:0.34
Consensus pattern (60 bp):
AAAAAAAAAGTTTTTGAGGGAAAGTTGAAAGTATCAATTTTCCTTAAAATTAAAGTTTCC
Found at i:7548226 original size:119 final size:118
Alignment explanation
Indices: 7547954--7548305 Score: 507
Period size: 119 Copynumber: 3.0 Consensus size: 118
7547944 TAATTTCAAG
* * *
7547954 AAAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTT-TTTAAAAAATAAA--TT-AAAAAA
1 AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTT-AAAAATAAATTTTCAAAAAA
* * *
7548015 ATGATTTTTGAAGGAAAGTTGAAAGTATCAATTTCCCTCAAAATTAAAGTTTCCAAA
65 AAG-TTTTTGAGGGAAAGTTGAAAGTATCAATTTCCCTCGAAATTAAAGTTTCC--A
7548072 AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAAAAA
1 AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC-AAAAAA
7548137 AAGTTTTTGAGGGAAAGTTGAAAGTATCAATTTCCCTCGAAATTAAAGTTTCCA
65 AAGTTTTTGAGGGAAAGTTGAAAGTATCAATTTCCCTCGAAATTAAAGTTTCCA
*
7548191 AAAAGAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC-AAAAAA
1 AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAAAAA
* * * * *
7548255 GGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAAGTTT
66 AGTTTTTGAGGGAAAGTTGAAAGTATCAATTTCCCTCG-AAATTAAAGTTT
7548306 TGCAAGTGAA
Statistics
Matches: 216, Mismatches: 12, Indels: 12
0.90 0.05 0.05
Matches are distributed among these distances:
117 40 0.19
118 58 0.27
119 60 0.28
120 2 0.01
121 48 0.22
122 8 0.04
ACGTcount: A:0.45, C:0.07, G:0.14, T:0.34
Consensus pattern (118 bp):
AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAAAAA
AGTTTTTGAGGGAAAGTTGAAAGTATCAATTTCCCTCGAAATTAAAGTTTCCA
Found at i:7552811 original size:41 final size:41
Alignment explanation
Indices: 7552766--7553187 Score: 596
Period size: 42 Copynumber: 10.1 Consensus size: 41
7552756 ATGATTGTCA
* *
7552766 AGGAGTAATTTAATTTTCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAG
* *
7552807 AGGAGCACTTTAC-TTTCAAAAGTCATGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTTC-AAAGTCGTGGTGCCTCTGTTTAG
* * *
7552848 AGGAGTAATTTACTTTTCCAAGTCGTGGTGCTTCTGTTTAG
1 AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAG
* * * *
7552889 AGGAGCAATTTATTTTTCTAAAGTCATGGTGCCTTTGTTTAA
1 AGGAGCAATTTACTTTTC-AAAGTCGTGGTGCCTCTGTTTAG
*
7552931 AGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAG
* *
7552972 AGGAGTAATTTACTTTTCAAAAGTCGTGGTGCCTCTATTTAG
1 AGGAGCAATTTACTTTTC-AAAGTCGTGGTGCCTCTGTTTAG
*
7553014 AGGAGCAATTTA-TTTTCCCAAAGTCGTGGTGCCTCTATTTAG
1 AGGAGCAATTTACTTTT--CAAAGTCGTGGTGCCTCTGTTTAG
7553056 AGGAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTT-CAAAGTCGTGGTGCCTCTGTTTAG
7553098 AGGAGCAATTTACTTTTCCAAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTT-C-AAAGTCGTGGTGCCTCTGTTTAG
* * *
7553141 AGGAGCAATTTACTTTCCAAAGTCGTTGAGCCTCTGTTTAG
1 AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAG
7553182 AGGAGC
1 AGGAGC
7553188 TTTGATAAAA
Statistics
Matches: 344, Mismatches: 29, Indels: 16
0.88 0.07 0.04
Matches are distributed among these distances:
40 4 0.01
41 146 0.42
42 150 0.44
43 44 0.13
ACGTcount: A:0.24, C:0.17, G:0.23, T:0.36
Consensus pattern (41 bp):
AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAG
Found at i:7553383 original size:120 final size:123
Alignment explanation
Indices: 7553212--7553446 Score: 361
Period size: 120 Copynumber: 1.9 Consensus size: 123
7553202 ATAAAAAAAC
*
7553212 AAAAAAAAGCAAAGAAAAAATGGAAAAAAAAAACAAAAAAGGTTGCCTCTATTTAGAGGAGCTTT
1 AAAAAAAAGCAAAGAAAAAAT-GAAAAAAAAAACAAAAAAGGTTGACTCTATTTAGAGGAGCTTT
* * *
7553277 GTTTATGTTTCTCAAAGTCATTGAGCCTCTGCTTAGAGGAGCTTTGATCATTTTTTTAA
65 GTTTATGTTTCTCAAAATCATTGAGCATCTGCTTAGAAGAGCTTTGATCATTTTTTTAA
* *
7553336 AAAAAAAAGCAAA-AAAACAT-AAAAATAAATA-AAAAAA-GTTGACTCTATTTAGAGGAGCTTT
1 AAAAAAAAGCAAAGAAAAAATGAAAAA-AAAAACAAAAAAGGTTGACTCTATTTAGAGGAGCTTT
*
7553397 GTTTATGTTTCTCAAAATCATTGAGCATCTGCTTAGAAGTGCTTTGATCA
65 GTTTATGTTTCTCAAAATCATTGAGCATCTGCTTAGAAGAGCTTTGATCA
7553447 AAATTAAAAA
Statistics
Matches: 103, Mismatches: 7, Indels: 6
0.89 0.06 0.05
Matches are distributed among these distances:
120 69 0.67
121 11 0.11
122 4 0.04
123 6 0.06
124 13 0.13
ACGTcount: A:0.42, C:0.12, G:0.16, T:0.30
Consensus pattern (123 bp):
AAAAAAAAGCAAAGAAAAAATGAAAAAAAAAACAAAAAAGGTTGACTCTATTTAGAGGAGCTTTG
TTTATGTTTCTCAAAATCATTGAGCATCTGCTTAGAAGAGCTTTGATCATTTTTTTAA
Found at i:7553458 original size:120 final size:122
Alignment explanation
Indices: 7553207--7553476 Score: 357
Period size: 120 Copynumber: 2.2 Consensus size: 122
7553197 AAAAAATAAA
*
7553207 AAAACAAAAAAAAGCAAAGAAAAAATGGAAAAAAAAAACAAAAAAGGTTGCCTCTATTTAGAGGA
1 AAAA-AAAAAAAAGCAAA-AAAAAAT-GAAAAAAAAAACAAAAAAGGTTGACTCTATTTAGAGGA
* * * ***
7553272 GCTTTGTTTATGTTTCTCAAAGTCATTGAGCCTCTGCTTAGAGGAGCTTTGATCATTTTT
63 GCTTTGTTTATGTTTCTCAAAATCATTGAGCATCTGCTTAGAAGAGCTTTGATCAAAATT
** * *
7553332 TTAAAAAAAAAAGCAAAAAAACAT-AAAAATAAATA-AAAAAA-GTTGACTCTATTTAGAGGAGC
1 AAAAAAAAAAAAGCAAAAAAAAATGAAAAA-AAAAACAAAAAAGGTTGACTCTATTTAGAGGAGC
*
7553394 TTTGTTTATGTTTCTCAAAATCATTGAGCATCTGCTTAGAAGTGCTTTGATCAAAATT
65 TTTGTTTATGTTTCTCAAAATCATTGAGCATCTGCTTAGAAGAGCTTTGATCAAAATT
7553452 AAAAAAAAAAGAAGCAAGAAAAAAA
1 AAAAAAAAAA-AAGCAA-AAAAAAA
7553477 AATCCAGTTA
Statistics
Matches: 127, Mismatches: 15, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
120 79 0.62
121 17 0.13
122 10 0.08
123 6 0.05
124 13 0.10
125 2 0.02
ACGTcount: A:0.47, C:0.11, G:0.15, T:0.27
Consensus pattern (122 bp):
AAAAAAAAAAAAGCAAAAAAAAATGAAAAAAAAAACAAAAAAGGTTGACTCTATTTAGAGGAGCT
TTGTTTATGTTTCTCAAAATCATTGAGCATCTGCTTAGAAGAGCTTTGATCAAAATT
Found at i:7553649 original size:15 final size:15
Alignment explanation
Indices: 7553631--7553661 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
7553621 TTTTTATTCA
*
7553631 TTTTTATTTTATATT
1 TTTTTATTTCATATT
7553646 TTTTTATTTCATATT
1 TTTTTATTTCATATT
7553661 T
1 T
7553662 ACCTTTTTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.19, C:0.03, G:0.00, T:0.77
Consensus pattern (15 bp):
TTTTTATTTCATATT
Found at i:7553865 original size:22 final size:22
Alignment explanation
Indices: 7553840--7553923 Score: 71
Period size: 22 Copynumber: 3.7 Consensus size: 22
7553830 ATGGAGGAGA
7553840 AATCAGAATAGGAGAGAAGAAG
1 AATCAGAATAGGAGAGAAGAAG
* *
7553862 AATCCGAATAGGAGATGAA-AAA
1 AATCAGAATAGGAGA-GAAGAAG
** *
7553884 AAAGAGGAGAAAGGAGAGAAGAAG
1 AATCA-GA-ATAGGAGAGAAGAAG
* *
7553908 AATCCGAATAAGAGAG
1 AATCAGAATAGGAGAG
7553924 GAAAAAAAAC
Statistics
Matches: 46, Mismatches: 12, Indels: 8
0.70 0.18 0.12
Matches are distributed among these distances:
22 25 0.54
23 10 0.22
24 11 0.24
ACGTcount: A:0.55, C:0.06, G:0.31, T:0.08
Consensus pattern (22 bp):
AATCAGAATAGGAGAGAAGAAG
Found at i:7553902 original size:46 final size:47
Alignment explanation
Indices: 7553844--7553932 Score: 153
Period size: 46 Copynumber: 1.9 Consensus size: 47
7553834 AGGAGAAATC
* *
7553844 AGAATAGGAGAGAAGAAGAATCCGAATAGGAGATGAAAAAAAAGAGG
1 AGAATAGGAGAGAAGAAGAATCCGAATAAGAGAGGAAAAAAAAGAGG
7553891 AGAA-AGGAGAGAAGAAGAATCCGAATAAGAGAGGAAAAAAAA
1 AGAATAGGAGAGAAGAAGAATCCGAATAAGAGAGGAAAAAAAA
7553933 CAGAGGAAAA
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
46 36 0.90
47 4 0.10
ACGTcount: A:0.58, C:0.04, G:0.30, T:0.07
Consensus pattern (47 bp):
AGAATAGGAGAGAAGAAGAATCCGAATAAGAGAGGAAAAAAAAGAGG
Found at i:7556454 original size:176 final size:173
Alignment explanation
Indices: 7556147--7556717 Score: 670
Period size: 176 Copynumber: 3.2 Consensus size: 173
7556137 TTTCAAGAAA
* * ** ** ***
7556147 AAAAAATATTTTTGACGAAAAATTGAAAGTATCAATTTTTCTTAAAAAT-AAA--TAAAAAAAAC
1 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTCCCTCGAAAATAAAAGTTTCCAAAAA-
* * * * *
7556209 GATTTTTGA-AGGAAAGTTGAAAGTATCAATTTCCCTCAAAATTAAAGTTTTCAAAAAAATATAT
65 TATTTTTGAGA-AAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAA-TTTTC-AAAAAA-ATAT
* *
7556273 TTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCA
126 TTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAA-TTTCC
* *
7556322 AAAAAAAAGTTTTTGAGGAAAAGTTGAAAGTATCAATTTCCCTCG-AAATTAAAGTTTCCAAAAA
1 AAAAAATA-TTTTTGAGGAAAAGTTGAAAGTATCAATTTCCCTCGAAAATAAAAGTTTCC--AAA
* * **
7556386 GAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC-AAAAAAGGTT
63 -AATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAAAAATATT
**
7556450 TTTGAGGAAAAGTTGAAAGTATCAATTTTTCTCGAAAATAAAAGTTTCC
127 TTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAAT-AAA-TTTCC
* * *
7556499 AAAGAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTCGAAAATAAAAGTTTCCAAAAAT
1 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTCCCTCGAAAATAAAAGTTTCCAAAAAT
* *
7556564 ATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTTAAAATCAAAATTTCCAAAAAAAATATTT
66 ATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT--AAATTTTC-AAAAAAATATTT
*
7556629 TTGGGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAATTTCC
128 TTGAGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAATTTCC
7556675 AAAAAATATTTTTG-GAGAAAAGTTGAAAGTATCAATTTTCCCT
1 AAAAAATATTTTTGAG-GAAAAGTTGAAAGTATCAA-TTTCCCT
7556718 TTACAAGAAC
Statistics
Matches: 339, Mismatches: 41, Indels: 30
0.83 0.10 0.07
Matches are distributed among these distances:
174 42 0.12
175 15 0.04
176 149 0.44
177 40 0.12
178 45 0.13
179 5 0.01
180 41 0.12
181 2 0.01
ACGTcount: A:0.45, C:0.09, G:0.12, T:0.34
Consensus pattern (173 bp):
AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTCCCTCGAAAATAAAAGTTTCCAAAAAT
ATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAAAAATATTTTTG
AGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAATTTCC
Found at i:7556493 original size:32 final size:32
Alignment explanation
Indices: 7556457--7556554 Score: 93
Period size: 32 Copynumber: 3.2 Consensus size: 32
7556447 GTTTTTGAGG
7556457 AAAAGTTGAAAGTATCAATTTTTCTCGAAAAT
1 AAAAGTTGAAAGTATCAATTTTTCTCGAAAAT
* * *
7556489 AAAAGTTTCCAAAGAAT--A-TTTT-T-G-AGA-
1 AAAAG-TT-GAAAGTATCAATTTTTCTCGAAAAT
*
7556516 AAAAGTTGAAAGTATCAATTTTCCTCGAAAAT
1 AAAAGTTGAAAGTATCAATTTTTCTCGAAAAT
7556548 AAAAGTT
1 AAAAGTT
7556555 TCCAAAAATA
Statistics
Matches: 50, Mismatches: 7, Indels: 18
0.67 0.09 0.24
Matches are distributed among these distances:
25 6 0.12
26 2 0.04
27 6 0.12
28 5 0.10
29 2 0.04
30 2 0.04
31 6 0.12
32 13 0.26
33 2 0.04
34 6 0.12
ACGTcount: A:0.45, C:0.09, G:0.13, T:0.33
Consensus pattern (32 bp):
AAAAGTTGAAAGTATCAATTTTTCTCGAAAAT
Found at i:7556569 original size:117 final size:116
Alignment explanation
Indices: 7556146--7556715 Score: 722
Period size: 117 Copynumber: 4.8 Consensus size: 116
7556136 ATTTCAAGAA
* * * **
7556146 AAAAAAATATTTTTGACGAAAAATTGAAAGTATCAATTTTTCTTAAAAATAAA-TAAAAAAAACG
1 AAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTCAAAAAA-G
* * *
7556210 ATTTTTGAAGG-AAAGTTGAAAGTATCAATTTCCCTC-AAAATTAAAGTTTTCA
65 ATTTTTG-AGGAAAAGTTGAAAGTATCAATTTTCCTCGAAAATAAAAG-TTTCC
7556262 AAAAAATATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAAAA
1 AAAAAA-ATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAA-TTTC-AAAAA
* * *
7556327 AAAGTTTTTGAGGAAAAGTTGAAAGTATCAATTTCCCTCG-AAATTAAAGTTTCC
63 AGA-TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCGAAAATAAAAGTTTCC
*
7556381 AAAAAGAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAAAA
1 AAAAA-AATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAA-TTTCAAAAAA
* *
7556446 GGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTCGAAAATAAAAGTTTCC
64 GATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCGAAAATAAAAGTTTCC
* * ** *
7556499 -AAAGAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTCGAAAATAAAAGTTTCCAAAAA
1 AAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAA-TTTCAAAAAA
* * **
7556563 TATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTTAAAATCAAAA-TTTCC
64 GATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCGAAAAT-AAAAGTTTCC
* *
7556616 AAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAATTTCCAAAAAA
1 -AAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTT-CAAAAAA
*
7556681 TATTTTTG-GAGAAAAGTTGAAAGTATCAATTTTCC
64 GATTTTTGAG-GAAAAGTTGAAAGTATCAATTTTCC
7556716 CTTTACAAGA
Statistics
Matches: 405, Mismatches: 34, Indels: 28
0.87 0.07 0.06
Matches are distributed among these distances:
116 47 0.12
117 139 0.34
118 64 0.16
119 108 0.27
120 47 0.12
ACGTcount: A:0.45, C:0.09, G:0.12, T:0.34
Consensus pattern (116 bp):
AAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTCAAAAAAGA
TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCGAAAATAAAAGTTTCC
Found at i:7556617 original size:235 final size:237
Alignment explanation
Indices: 7556145--7556715 Score: 782
Period size: 235 Copynumber: 2.4 Consensus size: 237
7556135 AATTTCAAGA
** * *
7556145 AAAAAAAATATTTTTGACGAAAAATTGAAAGTATCAATTTTTCTTAAAAATAAA--TAAAAAAAA
1 AAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAATTTACAAAAAA
* *
7556208 CGATTTTTGAAGG-AAAGTTGAAAGTATCAATTTCCCTCAAAATTAAAGTTTTCAAAAAAATATA
66 -GATTTTTG-AGGAAAAGTTGAAAGTATCAATTTTCCTCAAAATAAAAGTTTTCAAAAAAATATA
* * *
7556272 TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAAAAAAAGTTTTTG
129 TTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTCAAAAATAAAGTTTCAAAAAAAAAGTTTTTG
* * * *
7556337 AGGAAAAGTTGAAAGTATCAATTTCCCTCGAAATTAAAGTTTCC
194 AGAAAAAGTTGAAAGTATCAATTTCCCTCAAAATCAAAATTTCC
* * *
7556381 AAAAAGAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAAAA
1 AAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAATTTACAAAAAA
* * * *
7556446 GGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTCGAAAATAAAAG-TTTC-CAAAGA-ATAT
66 GATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTC-AAAATAAAAGTTTTCAAAAAAATATAT
* * *
7556508 TTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTCGAAAATAAAAGTTTC-CAAAAATA-TTTTTG
130 TTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTCAAAAAT-AAAGTTTCAAAAAAAAAGTTTTTG
* *
7556571 AGAAAAAGTTGAAAGTATCAATTTTCCTTTAAAATCAAAATTTCC
194 AGAAAAAGTTGAAAGTATCAA-TTTCCCTCAAAATCAAAATTTCC
*
7556616 AAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAATTTCCAAAAAA
1 AAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAATTTACAAAAAA
*
7556681 TATTTTTG-GAGAAAAGTTGAAAGTATCAATTTTCC
66 GATTTTTGAG-GAAAAGTTGAAAGTATCAATTTTCC
7556716 CTTTACAAGA
Statistics
Matches: 297, Mismatches: 31, Indels: 15
0.87 0.09 0.04
Matches are distributed among these distances:
234 27 0.09
235 157 0.53
236 63 0.21
237 34 0.11
238 16 0.05
ACGTcount: A:0.45, C:0.09, G:0.12, T:0.34
Consensus pattern (237 bp):
AAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAATTTACAAAAAA
GATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCAAAATAAAAGTTTTCAAAAAAATATATT
TTTGAGAAAAAGTTGAAAGTATCAATTTTCCTCAAAAATAAAGTTTCAAAAAAAAAGTTTTTGAG
AAAAAGTTGAAAGTATCAATTTCCCTCAAAATCAAAATTTCC
Found at i:7560565 original size:20 final size:23
Alignment explanation
Indices: 7560524--7560565 Score: 63
Period size: 20 Copynumber: 2.0 Consensus size: 23
7560514 GTTAGTAGGC
7560524 ATATAATATATACAATGAACAAT
1 ATATAATATATACAATGAACAAT
7560547 ATATAA-ATATA-AA-GAACAA
1 ATATAATATATACAATGAACAA
7560566 CATAAAGGGT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 6 0.32
21 2 0.11
22 5 0.26
23 6 0.32
ACGTcount: A:0.62, C:0.07, G:0.05, T:0.26
Consensus pattern (23 bp):
ATATAATATATACAATGAACAAT
Found at i:7561842 original size:15 final size:16
Alignment explanation
Indices: 7561809--7561853 Score: 51
Period size: 15 Copynumber: 2.9 Consensus size: 16
7561799 CAAAAAACAT
*
7561809 TATCATGTAA-AATAG
1 TATCATGCAATAATAG
7561824 TATCATTG-AATAATA-
1 TATCA-TGCAATAATAG
7561839 TATCATGCAATAATA
1 TATCATGCAATAATA
7561854 ATATAATATA
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
14 2 0.07
15 19 0.70
16 6 0.22
ACGTcount: A:0.47, C:0.09, G:0.09, T:0.36
Consensus pattern (16 bp):
TATCATGCAATAATAG
Found at i:7561860 original size:23 final size:23
Alignment explanation
Indices: 7561833--7561944 Score: 96
Period size: 21 Copynumber: 5.2 Consensus size: 23
7561823 GTATCATTGA
7561833 ATAATATATCATGCAATAATAAT
1 ATAATATATCATGCAATAATAAT
*
7561856 ATAATATATCATGTAAT-A-AAT
1 ATAATATATCATGCAATAATAAT
* *
7561877 ATAA-ACTATCATACAAT--TAAG
1 ATAATA-TATCATGCAATAATAAT
* *
7561898 ATAAAATATCATGTAATAATAAT
1 ATAATATATCATGCAATAATAAT
* *
7561921 -TAATA-ACCATGCAAAAATAA-
1 ATAATATATCATGCAATAATAAT
7561941 ATAA
1 ATAA
7561945 ACAAAAACAT
Statistics
Matches: 72, Mismatches: 11, Indels: 14
0.74 0.11 0.14
Matches are distributed among these distances:
20 1 0.01
21 46 0.64
22 6 0.08
23 19 0.26
ACGTcount: A:0.55, C:0.09, G:0.04, T:0.31
Consensus pattern (23 bp):
ATAATATATCATGCAATAATAAT
Found at i:7562057 original size:106 final size:106
Alignment explanation
Indices: 7561872--7562088 Score: 434
Period size: 106 Copynumber: 2.0 Consensus size: 106
7561862 TATCATGTAA
7561872 TAAATATAAACTATCATACAATTAAGATAAAATATCATGTAATAATAATTAATAACCATGCAAAA
1 TAAATATAAACTATCATACAATTAAGATAAAATATCATGTAATAATAATTAATAACCATGCAAAA
7561937 ATAAATAAACAAAAACATCATAAATAATCTTGCCAAATCAC
66 ATAAATAAACAAAAACATCATAAATAATCTTGCCAAATCAC
7561978 TAAATATAAACTATCATACAATTAAGATAAAATATCATGTAATAATAATTAATAACCATGCAAAA
1 TAAATATAAACTATCATACAATTAAGATAAAATATCATGTAATAATAATTAATAACCATGCAAAA
7562043 ATAAATAAACAAAAACATCATAAATAATCTTGCCAAATCAC
66 ATAAATAAACAAAAACATCATAAATAATCTTGCCAAATCAC
7562084 TAAAT
1 TAAAT
7562089 TAGAATAATA
Statistics
Matches: 111, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
106 111 1.00
ACGTcount: A:0.56, C:0.14, G:0.04, T:0.27
Consensus pattern (106 bp):
TAAATATAAACTATCATACAATTAAGATAAAATATCATGTAATAATAATTAATAACCATGCAAAA
ATAAATAAACAAAAACATCATAAATAATCTTGCCAAATCAC
Found at i:7562166 original size:5 final size:5
Alignment explanation
Indices: 7562104--7562159 Score: 53
Period size: 5 Copynumber: 10.8 Consensus size: 5
7562094 TAATAAGCAA
*
7562104 AAAAT GAAAA- AAAA- AACAT AAAAT AAAACT AAAAT AAAAT AAAAT CAGAAAT
1 AAAAT -AAAAT AAAAT AAAAT AAAAT AAAA-T AAAAT AAAAT AAAAT -A-AAAT
7562156 AAAA
1 AAAA
7562160 AATAAAAGAA
Statistics
Matches: 44, Mismatches: 2, Indels: 9
0.80 0.04 0.16
Matches are distributed among these distances:
4 7 0.16
5 22 0.50
6 11 0.25
7 4 0.09
ACGTcount: A:0.77, C:0.05, G:0.04, T:0.14
Consensus pattern (5 bp):
AAAAT
Found at i:7562807 original size:17 final size:16
Alignment explanation
Indices: 7562778--7562812 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 16
7562768 TCTGACTTAC
7562778 CAAAAACCAAAAAAAT
1 CAAAAACCAAAAAAAT
*
7562794 CAAAAATCCTAAAAAAT
1 CAAAAA-CCAAAAAAAT
7562811 CA
1 CA
7562813 TGAGAATCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 6 0.35
17 11 0.65
ACGTcount: A:0.69, C:0.20, G:0.00, T:0.11
Consensus pattern (16 bp):
CAAAAACCAAAAAAAT
Found at i:7565938 original size:20 final size:20
Alignment explanation
Indices: 7565915--7565953 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
7565905 AACTGAAAGT
7565915 AGGGAAAAAAACAAAAAAAA
1 AGGGAAAAAAACAAAAAAAA
*
7565935 AGGGAAAAAATCAAAAAAA
1 AGGGAAAAAAACAAAAAAA
7565954 TTGAAAAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.77, C:0.05, G:0.15, T:0.03
Consensus pattern (20 bp):
AGGGAAAAAAACAAAAAAAA
Found at i:7569288 original size:161 final size:159
Alignment explanation
Indices: 7568594--7569512 Score: 542
Period size: 158 Copynumber: 5.8 Consensus size: 159
7568584 ATAACTATGG
* * * * * * * * * *
7568594 AAACTAAGTTCAATCATTCGAACAAGTTTAATATAATATATCGAAGCTAGCTAAATTGTTAAAAC
1 AAACTAAGTTCAATCATTCAAATAAGTTTAATATCATGTATTGAAGCTATCCAAACTATTAAAAT
* * * * * * *
7568659 AAAACAATAATTGCAAATTTACATTTTTAGCC-TTTAACAACACAAAAAGTGATAAACAAACATA
66 AGAACAATAACTGTAAATTTATATTTTTA-CCTTTTAACTACACAAAAAGTGCT--A-AAAGATA
* * * *
7568723 TATGACAA-A-TTTTTCACATATATAAA-TCATGG
127 TA-AACAACATTTTTTCACACATATAAAGT-GTGA
*** * * * * * * * *
7568755 AAA-TCAAGTTCAATCATTTGGATAAGTTTAACATAATGTATTTAAACTATCTAAATTGTTAAGA
1 AAACT-AAGTTCAATCATTCAAATAAGTTTAATATCATGTATTGAAGCTATCCAAACTATTAAAA
* ** * * * * ** * * *
7568819 TACAA-ATATAACTACAAAATTATATTTTTGCCCTTTCA-TGGATAAAAA-TGCTAAACAAACAT
65 TAGAACA-ATAACTGTAAATTTATATTTTTACCTTTTAACTACACAAAAAGTGCTAAA-AGATAT
* * * ** *
7568881 AAACATA-ATTTTTTCATATATATCAAGCATCA
128 AAACA-ACATTTTTTCACACATATAAAGTGTGA
* * * * * ** * *
7568913 AAACCAAATTCAATCATTCAAAAAATTTTAATATCATGTATTGAAGTTATATAAATTGTTAAAAT
1 AAACTAAGTTCAATCATTCAAATAAGTTTAATATCATGTATTGAAGCTATCCAAACTATTAAAAT
* ** * * * * * *
7568978 AGAACAACAACTACAAATTTATATTTTTCCCCTTTAA-TGATATAAAAAGTGCTAAACGAGCATA
66 AGAACAATAACTGTAAATTTATATTTTTACCTTTTAACT-ACACAAAAAGTGCTAAAAGA-TATA
** * *
7569042 AACAAC--TTTTTCACAGTTATCATGTGTGA
129 AACAACATTTTTTCACACATATAAAGTGTGA
* *** * *
7569071 AAACCAAGTTCAATCATTTGGATATGTTTAATATCATATATTGAAGCTATCCAAACTATTAAAAT
1 AAACTAAGTTCAATCATTCAAATAAGTTTAATATCATGTATTGAAGCTATCCAAACTATTAAAAT
* *
7569136 AGAACAATAACTGTAATTTTATATTTTTGCCTTTTAACTACACAAAAAGTGCTAAAAAGATATAA
66 AGAACAATAACTGTAAATTTATATTTTTACCTTTTAACTACACAAAAAGTGCT-AAAAGATATAA
*
7569201 ACAACAGTTTTTTCACACATATTAAGTGTGA
130 ACAACA-TTTTTTCACACATATAAAGTGTGA
* * * * *
7569232 AAACTATGTTCAATCATTCAGATAAGTTTAATATCATGTCTTGAAGTTATCCAAACTACT-AAAT
1 AAACTAAGTTCAATCATTCAAATAAGTTTAATATCATGTATTGAAGCTATCCAAACTATTAAAAT
* * * *
7569296 AGAACAATAATTGTAAATTTATATTTTTACCTTTTAAC-AGCACAAAAATTCCTGAATAG-TCAT
66 AGAACAATAACTGTAAATTTATATTTTTACCTTTTAACTA-CACAAAAAGTGCT-AAAAGAT-AT
** * *
7569359 AAATGACAATTTTTTCACATATATAAATTGTGA
128 AAACAAC-ATTTTTTCACACATATAAAGTGTGA
* * * * * *
7569392 AAA-TCAAGTTTAATCATTCAAACAAGTTTAATATGACGTATTTAAGCTATCTAAACTATTAAAA
1 AAACT-AAGTTCAATCATTCAAATAAGTTTAATATCATGTATTGAAGCTATCCAAACTATTAAAA
* * * ** * * * *
7569456 CATTAA-TATAACTACAAAATTATATTTTTACCCTTTAA-TGGCACAAAAAATGCTAAA
65 TA-GAACAATAACTGTAAATTTATATTTTTACCTTTTAACT-ACACAAAAAGTGCTAAA
7569513 CAGCCTAGTT
Statistics
Matches: 600, Mismatches: 132, Indels: 53
0.76 0.17 0.07
Matches are distributed among these distances:
156 5 0.01
157 8 0.01
158 218 0.36
159 22 0.04
160 156 0.26
161 189 0.31
162 2 0.00
ACGTcount: A:0.43, C:0.14, G:0.08, T:0.34
Consensus pattern (159 bp):
AAACTAAGTTCAATCATTCAAATAAGTTTAATATCATGTATTGAAGCTATCCAAACTATTAAAAT
AGAACAATAACTGTAAATTTATATTTTTACCTTTTAACTACACAAAAAGTGCTAAAAGATATAAA
CAACATTTTTTCACACATATAAAGTGTGA
Found at i:7570230 original size:16 final size:15
Alignment explanation
Indices: 7570199--7570237 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 15
7570189 CTTTGATAGC
7570199 AAAAAAAAAAAGTTT
1 AAAAAAAAAAAGTTT
7570214 AAAAACAAACAAA-TTT
1 AAAAA-AAA-AAAGTTT
7570230 AAAAAAAA
1 AAAAAAAA
7570238 TGAGAAAGAT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
15 8 0.36
16 11 0.50
17 3 0.14
ACGTcount: A:0.77, C:0.05, G:0.03, T:0.15
Consensus pattern (15 bp):
AAAAAAAAAAAGTTT
Found at i:7577187 original size:23 final size:23
Alignment explanation
Indices: 7577157--7577202 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
7577147 TTTATTATTT
7577157 TAAGTTCTGTTTCGAGATCCTAA
1 TAAGTTCTGTTTCGAGATCCTAA
7577180 TAAGTTCTGTTTCGAGATCCTAA
1 TAAGTTCTGTTTCGAGATCCTAA
7577203 GTGGTCGACT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.17, T:0.39
Consensus pattern (23 bp):
TAAGTTCTGTTTCGAGATCCTAA
Found at i:7579092 original size:54 final size:55
Alignment explanation
Indices: 7579010--7579122 Score: 158
Period size: 54 Copynumber: 2.1 Consensus size: 55
7579000 TCCTTAAATA
* *
7579010 TTTTAAAACTATTTTCTTTTTAAGG-AAAATTCAATATTTCAACTTTTTCCTCATT
1 TTTTAAAACTATTTTCTGTTTAAGGAAAAATT-AATATTTCAACTTTTTCCCCATT
* * *
7579065 TTTTGAAATTATTTT-TGTTTAAGGAAAAATTGATATTTCAACTTTTTCCCCATT
1 TTTTAAAACTATTTTCTGTTTAAGGAAAAATTAATATTTCAACTTTTTCCCCATT
7579119 TTTT
1 TTTT
7579123 TTCAAAATAT
Statistics
Matches: 52, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
54 33 0.63
55 19 0.37
ACGTcount: A:0.29, C:0.12, G:0.06, T:0.52
Consensus pattern (55 bp):
TTTTAAAACTATTTTCTGTTTAAGGAAAAATTAATATTTCAACTTTTTCCCCATT
Found at i:7579123 original size:55 final size:55
Alignment explanation
Indices: 7579010--7579169 Score: 155
Period size: 54 Copynumber: 2.9 Consensus size: 55
7579000 TCCTTAAATA
* * * *
7579010 TTTTAAAACTATTTTCTTTTTAAGG-AAAATTCAATATTTCAACTTTTTCCTCA-TT
1 TTTTAAAAATATTTT-TGTTTAAGGAAAAATT-GATATTTCAACTTTTTCCCCATTT
* *
7579065 TTTTGAAATTATTTTTGTTTAAGGAAAAATTGATATTTCAACTTTTTCCCCATTTT
1 TTTTAAAAATATTTTTGTTTAAGGAAAAATTGATATTTCAACTTTTTCCCCA-TTT
* * * *
7579121 TTTTCAAAATATTTTTTGTTTAA-TAAAATTTTTGATAATTCAACTTTTT
1 TTTTAAAAATA-TTTTTGTTTAAGGAAAA--ATTGATATTTCAACTTTTT
7579170 TTATTTTTGA
Statistics
Matches: 89, Mismatches: 10, Indels: 9
0.82 0.09 0.08
Matches are distributed among these distances:
54 27 0.30
55 19 0.21
56 15 0.17
57 11 0.12
58 17 0.19
ACGTcount: A:0.31, C:0.11, G:0.06, T:0.53
Consensus pattern (55 bp):
TTTTAAAAATATTTTTGTTTAAGGAAAAATTGATATTTCAACTTTTTCCCCATTT
Found at i:7579287 original size:18 final size:18
Alignment explanation
Indices: 7579245--7579288 Score: 70
Period size: 18 Copynumber: 2.4 Consensus size: 18
7579235 ATAATAAAAG
* *
7579245 AAAGAAAAAAAATACCAA
1 AAAGAATAAAAACACCAA
7579263 AAAGAATAAAAACACCAA
1 AAAGAATAAAAACACCAA
7579281 AAAGAATA
1 AAAGAATA
7579289 TTGACTTAGC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.75, C:0.11, G:0.07, T:0.07
Consensus pattern (18 bp):
AAAGAATAAAAACACCAA
Found at i:7581548 original size:17 final size:17
Alignment explanation
Indices: 7581507--7581554 Score: 51
Period size: 17 Copynumber: 2.7 Consensus size: 17
7581497 CCGTAAAAAT
*
7581507 ACTTATTTGTATAAACACC
1 ACTT-TTTGTA-AAACACA
*
7581526 ATTTTTTGTAAAACACA
1 ACTTTTTGTAAAACACA
*
7581543 ACTTTTAGTAAA
1 ACTTTTTGTAAA
7581555 TAATTATGTC
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
17 16 0.64
18 6 0.24
19 3 0.12
ACGTcount: A:0.40, C:0.15, G:0.06, T:0.40
Consensus pattern (17 bp):
ACTTTTTGTAAAACACA
Found at i:7581548 original size:18 final size:19
Alignment explanation
Indices: 7581507--7581548 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
7581497 CCGTAAAAAT
* *
7581507 ACTTATTTGTATAAACACC
1 ACTTTTTTGTATAAACACA
7581526 A-TTTTTTGTA-AAACACA
1 ACTTTTTTGTATAAACACA
7581543 ACTTTT
1 ACTTTT
7581549 AGTAAATAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
17 7 0.35
18 12 0.60
19 1 0.05
ACGTcount: A:0.36, C:0.17, G:0.05, T:0.43
Consensus pattern (19 bp):
ACTTTTTTGTATAAACACA
Found at i:7592534 original size:30 final size:29
Alignment explanation
Indices: 7592454--7592535 Score: 71
Period size: 30 Copynumber: 2.9 Consensus size: 29
7592444 AAATAATTTT
* *
7592454 TTAATTTTTTAATA-ATATT-TA-TAAAA
1 TTAAATTTTAAATATATATTATATTAAAA
* * *
7592480 TTAAAATTTTATATTTATAATATATTAAATA
1 TT-AAATTTTAAATATATATTATATTAAA-A
*
7592511 TTAACTTTTAAATATATATTATATT
1 TTAAATTTTAAATATATATTATATT
7592536 TTTACAAATG
Statistics
Matches: 42, Mismatches: 9, Indels: 6
0.74 0.16 0.11
Matches are distributed among these distances:
26 2 0.05
27 8 0.19
28 4 0.10
29 2 0.05
30 23 0.55
31 3 0.07
ACGTcount: A:0.45, C:0.01, G:0.00, T:0.54
Consensus pattern (29 bp):
TTAAATTTTAAATATATATTATATTAAAA
Found at i:7595724 original size:98 final size:98
Alignment explanation
Indices: 7595545--7595730 Score: 257
Period size: 98 Copynumber: 1.9 Consensus size: 98
7595535 ACTTTATCCA
* * * * * *
7595545 TCTTTTTCTCTAGGGCTTGAATGAGGAAAGAGCCTATTCCTCTAGTTTTTTCTTCTTGTTAAGGC
1 TCTTTTTCTCTAGGGCTTAAATGAGGAAAAAG-CTAGTCCTCTAGCTTTTTCTTCTTGTAAAAGC
7595610 AAAACAAAACACTGCACTTTCCCACAAGTTTGTC
65 AAAACAAAACACTGCACTTTCCCACAAGTTTGTC
* *
7595644 TCTTTTTCTCTAGGGCTTAAATGAGGAAAAAG-TGCGTCCTCTAGCTTTTTCTTCTTGTAAAAGT
1 TCTTTTTCTCTAGGGCTTAAATGAGGAAAAAGCT-AGTCCTCTAGCTTTTTCTTCTTGTAAAAGC
* *
7595708 AAATCAAAACAGTGCACTTTCCC
65 AAAACAAAACACTGCACTTTCCC
7595731 TCTGCAGATC
Statistics
Matches: 76, Mismatches: 10, Indels: 3
0.85 0.11 0.03
Matches are distributed among these distances:
97 1 0.01
98 45 0.59
99 30 0.39
ACGTcount: A:0.26, C:0.22, G:0.16, T:0.36
Consensus pattern (98 bp):
TCTTTTTCTCTAGGGCTTAAATGAGGAAAAAGCTAGTCCTCTAGCTTTTTCTTCTTGTAAAAGCA
AAACAAAACACTGCACTTTCCCACAAGTTTGTC
Found at i:7601301 original size:2 final size:2
Alignment explanation
Indices: 7601288--7601318 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
7601278 TGTATATGCA
*
7601288 AG AG AA AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
7601319 CCTATGTTAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.55, C:0.00, G:0.45, T:0.00
Consensus pattern (2 bp):
AG
Found at i:7605361 original size:22 final size:22
Alignment explanation
Indices: 7605320--7605362 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
7605310 TTTTTGCATA
*
7605320 CTAATTACATGTATAGTATTAG
1 CTAATTACATATATAGTATTAG
* *
7605342 CTAATTACATATGTATTATTA
1 CTAATTACATATATAGTATTA
7605363 AATTTTAAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.37, C:0.09, G:0.09, T:0.44
Consensus pattern (22 bp):
CTAATTACATATATAGTATTAG
Found at i:7608455 original size:95 final size:95
Alignment explanation
Indices: 7608272--7608443 Score: 247
Period size: 95 Copynumber: 1.8 Consensus size: 95
7608262 CTAAAATAGT
* * * * *
7608272 AGTGACAATATGGCCAAATCATATGAACTAATGTGTTTTTCCTTTTTGTTTTCCTATTTCTTGGA
1 AGTGACAATATGGCCAAATCATATCAAATAATGTCTTTTTCCTTTTTCTTTTCCTATTTCTTGCA
* * *
7608337 TGTGATTTGCATGTGAAATTGAAGCTAAAG
66 TGTGACTTGAATGTGAAACTGAAGCTAAAG
*
7608367 AGTGACAATATGGCCAAATCATATCAAATAATGTCTTTTTCC-TTTTCTTTTCCTCTTTCTTGCA
1 AGTGACAATATGGCCAAATCATATCAAATAATGTCTTTTTCCTTTTTCTTTTCCTATTTCTTGCA
7608431 TGTGTACTTGAAT
66 TGTG-ACTTGAAT
7608444 TCGTAGCTGA
Statistics
Matches: 68, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
94 23 0.34
95 45 0.66
ACGTcount: A:0.26, C:0.16, G:0.16, T:0.42
Consensus pattern (95 bp):
AGTGACAATATGGCCAAATCATATCAAATAATGTCTTTTTCCTTTTTCTTTTCCTATTTCTTGCA
TGTGACTTGAATGTGAAACTGAAGCTAAAG
Found at i:7609001 original size:33 final size:33
Alignment explanation
Indices: 7608964--7609030 Score: 125
Period size: 33 Copynumber: 2.0 Consensus size: 33
7608954 TAAATGATGA
7608964 ACAAAAACCATTAAAATTGACAATGCATCATAT
1 ACAAAAACCATTAAAATTGACAATGCATCATAT
*
7608997 ACAAAAACCATTAACATTGACAATGCATCATAT
1 ACAAAAACCATTAAAATTGACAATGCATCATAT
7609030 A
1 A
7609031 ATAATCCCGT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.51, C:0.19, G:0.06, T:0.24
Consensus pattern (33 bp):
ACAAAAACCATTAAAATTGACAATGCATCATAT
Found at i:7616616 original size:16 final size:17
Alignment explanation
Indices: 7616577--7616623 Score: 53
Period size: 17 Copynumber: 2.8 Consensus size: 17
7616567 GCAACTAAGA
7616577 ACAC-ATAAAACATTAT
1 ACACAATAAAACATTAT
*
7616593 ACACAATAAAATATTA-
1 ACACAATAAAACATTAT
*
7616609 ACATAATAACAACAT
1 ACACAATAA-AACAT
7616624 ATTCAGGTCA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
16 12 0.46
17 14 0.54
ACGTcount: A:0.60, C:0.17, G:0.00, T:0.23
Consensus pattern (17 bp):
ACACAATAAAACATTAT
Found at i:7622629 original size:9 final size:9
Alignment explanation
Indices: 7622617--7622646 Score: 51
Period size: 9 Copynumber: 3.2 Consensus size: 9
7622607 AATATTTTAT
7622617 TAATTAAAA
1 TAATTAAAA
7622626 TAATTAAAA
1 TAATTAAAA
7622635 TATATTAAAA
1 TA-ATTAAAA
7622645 TA
1 TA
7622647 TAAAAATTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 11 0.55
10 9 0.45
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (9 bp):
TAATTAAAA
Found at i:7622643 original size:10 final size:10
Alignment explanation
Indices: 7622619--7622648 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
7622609 TATTTTATTA
7622619 ATTAAAATA-
1 ATTAAAATAT
7622628 ATTAAAATAT
1 ATTAAAATAT
7622638 ATTAAAATAT
1 ATTAAAATAT
7622648 A
1 A
7622649 AAAATTTAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 9 0.45
10 11 0.55
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (10 bp):
ATTAAAATAT
Found at i:7622660 original size:19 final size:20
Alignment explanation
Indices: 7622616--7622662 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 20
7622606 AAATATTTTA
*
7622616 TTAATTAAAATAATTAAAAT
1 TTAATTAAAATAATAAAAAT
*
7622636 AT-ATTAAAAT-ATAAAAAT
1 TTAATTAAAATAATAAAAAT
7622654 TTAATTAAA
1 TTAATTAAA
7622663 TTTATGAGCA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
18 8 0.35
19 14 0.61
20 1 0.04
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (20 bp):
TTAATTAAAATAATAAAAAT
Found at i:7623728 original size:26 final size:26
Alignment explanation
Indices: 7623695--7623754 Score: 86
Period size: 26 Copynumber: 2.3 Consensus size: 26
7623685 TTTACCAAAT
*
7623695 ATATTTTTTAGAAAACA-AAAAATAAAA
1 ATATTTTCTA-AAAA-ATAAAAATAAAA
7623722 ATATTTTCTAAAAAATAAAAATAAAA
1 ATATTTTCTAAAAAATAAAAATAAAA
7623748 ATATTTT
1 ATATTTT
7623755 ATCAAACCAA
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
25 1 0.03
26 21 0.68
27 9 0.29
ACGTcount: A:0.60, C:0.03, G:0.02, T:0.35
Consensus pattern (26 bp):
ATATTTTCTAAAAAATAAAAATAAAA
Found at i:7624867 original size:14 final size:15
Alignment explanation
Indices: 7624838--7624871 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
7624828 TTTGATGAAT
7624838 TTTTTTATTTTATAA
1 TTTTTTATTTTATAA
7624853 TTTTTTATTTT-TAA
1 TTTTTTATTTTATAA
7624867 TTTTT
1 TTTTT
7624872 AGCAAAAGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 8 0.42
15 11 0.58
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (15 bp):
TTTTTTATTTTATAA
Found at i:7637657 original size:9 final size:8
Alignment explanation
Indices: 7637642--7637692 Score: 50
Period size: 9 Copynumber: 6.0 Consensus size: 8
7637632 ATGGATGAAG
7637642 TAAAAAAA
1 TAAAAAAA
7637650 TGAAAAAAA
1 T-AAAAAAA
7637659 TATGAAAAAA
1 TA--AAAAAA
7637669 T-AAAAAA
1 TAAAAAAA
*
7637676 TAAAAAGTA
1 TAAAAA-AA
7637685 TAAAAAAA
1 TAAAAAAA
7637693 AGAAAAAAAG
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
7 7 0.19
8 7 0.19
9 15 0.42
10 7 0.19
ACGTcount: A:0.78, C:0.00, G:0.06, T:0.16
Consensus pattern (8 bp):
TAAAAAAA
Found at i:7637698 original size:24 final size:24
Alignment explanation
Indices: 7637643--7637700 Score: 62
Period size: 24 Copynumber: 2.3 Consensus size: 24
7637633 TGGATGAAGT
7637643 AAAAAAATGAAAAAAATATGAAAAAA
1 AAAAAAAT--AAAAAATATGAAAAAA
* * *
7637669 TAAAAAATAAAAAGTATAAAAAAA
1 AAAAAAATAAAAAATATGAAAAAA
7637693 AGAAAAAA
1 A-AAAAAA
7637701 AGATAAAAGG
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
24 14 0.52
25 6 0.22
26 7 0.26
ACGTcount: A:0.81, C:0.00, G:0.07, T:0.12
Consensus pattern (24 bp):
AAAAAAATAAAAAATATGAAAAAA
Found at i:7637714 original size:19 final size:20
Alignment explanation
Indices: 7637642--7637708 Score: 66
Period size: 21 Copynumber: 3.2 Consensus size: 20
7637632 ATGGATGAAG
*
7637642 TAAAAAAATGAAAAAAA-TA
1 TAAAAAAAAGAAAAAAAGTA
*
7637661 TGAAAAAATAAAAAATAAAAAGTA
1 T--AAAAA-AAAGAA-AAAAAGTA
7637685 TAAAAAAAAGAAAAAAAG-A
1 TAAAAAAAAGAAAAAAAGTA
7637704 TAAAA
1 TAAAA
7637709 GGAAGACTTA
Statistics
Matches: 40, Mismatches: 3, Indels: 10
0.75 0.06 0.19
Matches are distributed among these distances:
19 7 0.17
20 6 0.15
21 10 0.25
22 9 0.22
23 5 0.12
24 3 0.08
ACGTcount: A:0.79, C:0.00, G:0.07, T:0.13
Consensus pattern (20 bp):
TAAAAAAAAGAAAAAAAGTA
Found at i:7638902 original size:21 final size:23
Alignment explanation
Indices: 7638844--7638902 Score: 70
Period size: 21 Copynumber: 2.7 Consensus size: 23
7638834 CTCCAAGCAT
*
7638844 AATCTTTAAAAATTTTCAAATGAG
1 AATCTTT-GAAATTTTCAAATGAG
*
7638868 AATCTTTG-AGTTTT-AAATGAG
1 AATCTTTGAAATTTTCAAATGAG
7638889 AATC-TTGAAATTTT
1 AATCTTTGAAATTTT
7638903 TTTATGTAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
20 3 0.10
21 16 0.52
22 5 0.16
24 7 0.23
ACGTcount: A:0.39, C:0.07, G:0.12, T:0.42
Consensus pattern (23 bp):
AATCTTTGAAATTTTCAAATGAG
Found at i:7639380 original size:17 final size:17
Alignment explanation
Indices: 7639314--7639429 Score: 72
Period size: 17 Copynumber: 6.8 Consensus size: 17
7639304 ACGAACCTTC
* *
7639314 AATTCTAGTGAATTTGAA
1 AATTCTTGTGAATCT-AA
** *
7639332 AATTCTTGCAAAGCTGAA
1 AATTCTTGTGAATCT-AA
*
7639350 AATT-TTGCGAATCTAA
1 AATTCTTGTGAATCTAA
**
7639366 AATTCTTGTGAATCTCC
1 AATTCTTGTGAATCTAA
* **
7639383 AATTCTTATGAATCTTT
1 AATTCTTGTGAATCTAA
* **
7639400 AATTCTTTTGAATCTTT
1 AATTCTTGTGAATCTAA
*
7639417 GATTCTTGTGAAT
1 AATTCTTGTGAAT
7639430 TTGTTTTTTT
Statistics
Matches: 81, Mismatches: 16, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
16 6 0.07
17 58 0.72
18 17 0.21
ACGTcount: A:0.31, C:0.13, G:0.13, T:0.43
Consensus pattern (17 bp):
AATTCTTGTGAATCTAA
Found at i:7648203 original size:42 final size:43
Alignment explanation
Indices: 7648133--7648221 Score: 103
Period size: 42 Copynumber: 2.1 Consensus size: 43
7648123 TTTCATACAA
* *
7648133 ACCCGACTCCGACCCGAATCTGACTTTTTTAAAAACAAAAT-CG
1 ACCCGACTCCGACCCGAACCCGACTTTTTTAAAAA-AAAATCCG
* *
7648176 ACCCGAC-CCGACCCGAAACCCGA-TTTTTTGAAGAAAAATCCG
1 ACCCGACTCCGACCCG-AACCCGACTTTTTTAAAAAAAAATCCG
7648218 ACCC
1 ACCC
7648222 TAAAATAGTC
Statistics
Matches: 40, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
41 5 0.12
42 23 0.57
43 12 0.30
ACGTcount: A:0.34, C:0.34, G:0.13, T:0.19
Consensus pattern (43 bp):
ACCCGACTCCGACCCGAACCCGACTTTTTTAAAAAAAAATCCG
Found at i:7648627 original size:52 final size:50
Alignment explanation
Indices: 7648547--7648665 Score: 120
Period size: 52 Copynumber: 2.3 Consensus size: 50
7648537 TTTTAGCAAG
* * *
7648547 AAAATGCCTTGAATAATCTCTTACAAAAA-TT-GAATGAGG-TTATTCAAGGTAA
1 AAAATGCCTTCAATAATCTCATAAAAAAATTTGGAA-G-GGATTATT---GGTAA
*
7648599 AAAATGCCTTTAATAATC-CATAGAAAAAATTTGGAAGGGATTATTGGTAA
1 AAAATGCCTTCAATAATCTCATA-AAAAAATTTGGAAGGGATTATTGGTAA
7648649 AAAATGCCTTCAATAAT
1 AAAATGCCTTCAATAAT
7648666 TCACTCAATA
Statistics
Matches: 59, Mismatches: 4, Indels: 10
0.81 0.05 0.14
Matches are distributed among these distances:
50 21 0.36
51 3 0.05
52 24 0.41
53 8 0.14
54 3 0.05
ACGTcount: A:0.44, C:0.11, G:0.15, T:0.30
Consensus pattern (50 bp):
AAAATGCCTTCAATAATCTCATAAAAAAATTTGGAAGGGATTATTGGTAA
Found at i:7648944 original size:35 final size:35
Alignment explanation
Indices: 7648889--7648960 Score: 99
Period size: 35 Copynumber: 2.1 Consensus size: 35
7648879 ATTATATATG
* *
7648889 TGAAATCAATTGTAGGTTTATGCCCAGAAAACATT
1 TGAAATCAATTGTAGGTTTATACCCAAAAAACATT
* * *
7648924 TGAAGTCAGTTGTAGGTTTATACCTAAAAAACATT
1 TGAAATCAATTGTAGGTTTATACCCAAAAAACATT
7648959 TG
1 TG
7648961 GTTTATATAT
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.36, C:0.12, G:0.18, T:0.33
Consensus pattern (35 bp):
TGAAATCAATTGTAGGTTTATACCCAAAAAACATT
Found at i:7652904 original size:66 final size:65
Alignment explanation
Indices: 7652696--7652962 Score: 296
Period size: 66 Copynumber: 4.2 Consensus size: 65
7652686 CACTATAAAC
* * * * * * *
7652696 GCCTTTAATAAT-CCCTGATAGAAAATTAGAAAGGATTATTGAAGGCATTTTTTG-CAAAAAAAT
1 GCCTTCAATAATACCTTGATAAAAAATTGGAGAGGATTATTGAAAGCATTTTTTGAAAAAAAAAT
* ** * ** ** * ***
7652759 ACCTTCAATAATTTCTT-TTAAAATTTTTCAAAGGATTATTGAAAG--TGTTTTT--ATTTAAAA
1 GCCTTCAATAATACCTTGATAAAAAATTGGAGAGGATTATTGAAAGCAT-TTTTTGAAAAAAAAA
7652819 T
65 T
7652820 GCCTTCAATAATACCTTGATAAAAAATTGGAGAGGATTATTGAAAGCATTTTTTGAAAAAAAAAA
1 GCCTTCAATAATACCTTGATAAAAAATTGGAGAGGATTATTGAAAGCATTTTTTG-AAAAAAAAA
7652885 T
65 T
7652886 GCCTTCAATAATACCTTGATAAAAAATTGGAGAGGATTATTGAAAGCATTTTTTGAAAAAAAAAT
1 GCCTTCAATAATACCTTGATAAAAAATTGGAGAGGATTATTGAAAGCATTTTTTGAAAAAAAAAT
7652951 GCCTTCAATAAT
1 GCCTTCAATAAT
7652963 TTTCTTTAAA
Statistics
Matches: 169, Mismatches: 27, Indels: 14
0.80 0.13 0.07
Matches are distributed among these distances:
61 20 0.12
62 27 0.16
63 36 0.21
64 3 0.02
65 22 0.13
66 61 0.36
ACGTcount: A:0.42, C:0.10, G:0.13, T:0.35
Consensus pattern (65 bp):
GCCTTCAATAATACCTTGATAAAAAATTGGAGAGGATTATTGAAAGCATTTTTTGAAAAAAAAAT
Found at i:7652992 original size:65 final size:66
Alignment explanation
Indices: 7652815--7652994 Score: 240
Period size: 66 Copynumber: 2.7 Consensus size: 66
7652805 GTTTTTATTT
** *
7652815 AAAATGCCTTCAATAATACCTTGATAAAAAATTGGAGAGGATTATTGAAAGCATTTTTTGAAAAA
1 AAAATGCCTTCAATAATACCTTGATAAAAAATTAAAGAGGACTATTGAAAGCATTTTTTGAAAAA
7652880 A
66 A
** *
7652881 AAAATGCCTTCAATAATACCTTGATAAAAAATTGGAGAGGATTATTGAAAGCATTTTTTG-AAAA
1 AAAATGCCTTCAATAATACCTTGATAAAAAATTAAAGAGGACTATTGAAAGCATTTTTTGAAAAA
7652945 A
66 A
** *
7652946 AAAATGCCTTCAATAATTTTCTTTA-AAAAAATTAAATGA-GACTATTGAA
1 AAAATGCCTTCAATAA-TACCTTGATAAAAAATTAAA-GAGGACTATTGAA
7652995 GGTGTTTTTA
Statistics
Matches: 106, Mismatches: 6, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
65 39 0.37
66 67 0.63
ACGTcount: A:0.46, C:0.09, G:0.13, T:0.32
Consensus pattern (66 bp):
AAAATGCCTTCAATAATACCTTGATAAAAAATTAAAGAGGACTATTGAAAGCATTTTTTGAAAAA
A
Found at i:7653003 original size:65 final size:64
Alignment explanation
Indices: 7652725--7653136 Score: 215
Period size: 63 Copynumber: 6.5 Consensus size: 64
7652715 AGAAAATTAG
** * * ***
7652725 AAAG-GATTATTGAAGGCATTTTTTG-CAAAAAAATACCTTCAATAA-TTTCTTTTAAAATTTTT
1 AAAGAGATTATTGAAGGTGTTTTTTGAAAAAAAAATGCCTTCAATAATTTTC-TTTAAAAAAATT
* *** ** *
7652787 CAAAG-GATTATTGAAAGTG-TTTTT--ATTTAAAATGCCTTCAATAA-TACCTTGATAAAAAAT
1 -AAAGAGATTATTGAAGGTGTTTTTTGAAAAAAAAATGCCTTCAATAATTTTCTTTA-AAAAAAT
7652847 T
64 T
** * ** ** *
7652848 GGAGAGGATTATTGAAAGCATTTTTTGAAAAAAAAAATGCCTTCAATAA-TACCTTGATAAAAAA
1 AAAGA-GATTATTGAAGGTGTTTTTTG-AAAAAAAAATGCCTTCAATAATTTTCTTTA-AAAAAA
7652912 TT
63 TT
** * **
7652914 GGAGAGGATTATTGAAAGCATTTTTTGAAAAAAAAATGCCTTCAATAATTTTCTTTAAAAAAATT
1 AAAGA-GATTATTGAAGGTGTTTTTTGAAAAAAAAATGCCTTCAATAATTTTCTTTAAAAAAATT
* *** * * *
7652979 AAATGAGACTATTGAAGGTG-TTTTT-AGTCAAAAATGCCTTCAATAATCTCTTC-GTCAAAATA
1 AAA-GAGATTATTGAAGGTGTTTTTTGAAAAAAAAATGCCTTCAATAAT-T-TTCTTTAAAAAAA
7653041 -T
63 TT
* * ** *
7653042 AAAGGGATTATTGAAGGTGTTTTATG-CGAAAAAATGCCTTGAATAATTTT-TTTAAAAAAATTT
1 AAAGAGATTATTGAAGGTGTTTTTTGAAAAAAAAATGCCTTCAATAATTTTCTTTAAAAAAA-TT
* * * * *
7653105 AAGGGGGTTATTGAATGTGTTTTCTTCAAAAA
1 AAAGAGATTATTGAAGGTGTTTT-TTGAAAAA
7653137 GCCTTCAATA
Statistics
Matches: 278, Mismatches: 53, Indels: 34
0.76 0.15 0.09
Matches are distributed among these distances:
60 5 0.02
61 30 0.11
62 32 0.12
63 85 0.31
64 13 0.05
65 45 0.16
66 68 0.24
ACGTcount: A:0.40, C:0.09, G:0.15, T:0.36
Consensus pattern (64 bp):
AAAGAGATTATTGAAGGTGTTTTTTGAAAAAAAAATGCCTTCAATAATTTTCTTTAAAAAAATT
Found at i:7653076 original size:191 final size:189
Alignment explanation
Indices: 7652696--7653088 Score: 422
Period size: 191 Copynumber: 2.1 Consensus size: 189
7652686 CACTATAAAC
* * * *
7652696 GCCTTTAATAATCCCTGATAGAAAATTAGAAAGGATTATTGAAGGCATTTTTTGCAAAAAAATAC
1 GCCTTCAATAATCCCTGATAAAAAATTAGAAAGGATTATTGAAAGCATTTTTTGAAAAAAAATAC
*** * **
7652761 CTTCAATAATTTCTTTTAAAATTTTTCAAAGGATTATTGAAAGTGTTTTTATTTAAAATGCCTTC
66 CTTCAATAATTTCTTTTAAAAAAATTCAAAGGACTATTGAAAGTGTTTTTATCAAAAATGCCTTC
** *
7652826 AATAATACCTTGATAAAAAATTGGAGAGGATTATTGAAAGCATTTTTTGAAAAAAAAAAT
131 AATAATACCTTGATAAAAAATTAAAGAGGATTATTGAAAGCATTTTATG-AAAAAAAAAT
* * *
7652886 GCCTTCAATAATACCTTGATAAAAAATTGGAGAGGATTATTGAAAGCATTTTTTGAAAAAAAAAT
1 GCCTTCAATAAT-CCCTGATAAAAAATTAGAAAGGATTATTGAAAGCATTTTTTG-AAAAAAAAT
* *
7652951 GCCTTCAATAATTT-TCTTTAAAAAAATT-AAATGAGACTATTGAAGGTGTTTTTAGTCAAAAAT
64 ACCTTCAATAATTTCT-TTTAAAAAAATTCAAA-G-GACTATTGAAAGTGTTTTTA-TCAAAAAT
* * ** **
7653014 GCCTTCAATAAT-CTCTTCG-T-CAAAATATAAAG-GGATTATTGAAGGTGTTTTATG-CGAAAA
125 GCCTTCAATAATAC-CTT-GATAAAAAAT-TAAAGAGGATTATTGAAAGCATTTTATGAAAAAAA
7653074 AAT
187 AAT
*
7653077 GCCTTGAATAAT
1 GCCTTCAATAAT
7653089 TTTTTTAAAA
Statistics
Matches: 169, Mismatches: 25, Indels: 17
0.80 0.12 0.08
Matches are distributed among these distances:
190 11 0.07
191 59 0.35
192 31 0.18
193 42 0.25
194 25 0.15
195 1 0.01
ACGTcount: A:0.40, C:0.10, G:0.14, T:0.35
Consensus pattern (189 bp):
GCCTTCAATAATCCCTGATAAAAAATTAGAAAGGATTATTGAAAGCATTTTTTGAAAAAAAATAC
CTTCAATAATTTCTTTTAAAAAAATTCAAAGGACTATTGAAAGTGTTTTTATCAAAAATGCCTTC
AATAATACCTTGATAAAAAATTAAAGAGGATTATTGAAAGCATTTTATGAAAAAAAAAT
Found at i:7653494 original size:22 final size:21
Alignment explanation
Indices: 7653477--7653517 Score: 59
Period size: 19 Copynumber: 2.0 Consensus size: 21
7653467 AAAAATACCT
*
7653477 ATATAAAAAA-ATAT-AAATA
1 ATATAAAAAACAAATAAAATA
7653496 ATATAAAAAACAAATAAAATA
1 ATATAAAAAACAAATAAAATA
7653517 A
1 A
7653518 AGACATACCG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 10 0.53
20 3 0.16
21 6 0.32
ACGTcount: A:0.76, C:0.02, G:0.00, T:0.22
Consensus pattern (21 bp):
ATATAAAAAACAAATAAAATA
Found at i:7653505 original size:21 final size:21
Alignment explanation
Indices: 7653476--7653517 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
7653466 AAAAAATACC
*
7653476 TATATAAAA-AAATATAAATAA
1 TATAAAAAACAAATA-AAATAA
7653497 TATAAAAAACAAATAAAATAA
1 TATAAAAAACAAATAAAATAA
7653518 AGACATACCG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 14 0.74
22 5 0.26
ACGTcount: A:0.74, C:0.02, G:0.00, T:0.24
Consensus pattern (21 bp):
TATAAAAAACAAATAAAATAA
Found at i:7653952 original size:127 final size:129
Alignment explanation
Indices: 7653790--7654020 Score: 326
Period size: 127 Copynumber: 1.8 Consensus size: 129
7653780 TATTAAAGGC
* * ** *
7653790 ATTTTTCATTAAAAATGCCTTTAATAGTCCCTGATAGCAAATT-GAAAAGGATTATTGAAGGCAT
1 ATTTTTCATTAAAAATGCCTTCAATAATCCCTGATAAAAAATTAG-AAAGGATTATTGAAGGAAT
*
7653854 TTTTTGC-AAAAAAATACCTTCAATAA-TTTCTTTTAAAATTTTTCAAAGGATTATTTAAGGTGT
65 TTTTTGCAAAAAAAATACCTTCAATAATTTTCTTTAAAAATTTTTCAAAGGATTATTTAAGGTGT
* * **
7653917 ATTTTT-ATTAAAAATGCCTTCCATAATACCTTGATAAAAAATTAGAGGGGATTATTGAAGGAAT
1 ATTTTTCATTAAAAATGCCTTCAATAAT-CCCTGATAAAAAATTAGAAAGGATTATTGAAGGAAT
7653981 TTTTTGCAAAAAAAATACCTTCAATAATTTTCTTTAAAAA
65 TTTTTGCAAAAAAAATACCTTCAATAATTTTCTTTAAAAA
7654021 ATTAAATGAG
Statistics
Matches: 90, Mismatches: 10, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
126 18 0.20
127 41 0.46
128 20 0.22
129 11 0.12
ACGTcount: A:0.39, C:0.11, G:0.12, T:0.38
Consensus pattern (129 bp):
ATTTTTCATTAAAAATGCCTTCAATAATCCCTGATAAAAAATTAGAAAGGATTATTGAAGGAATT
TTTTGCAAAAAAAATACCTTCAATAATTTTCTTTAAAAATTTTTCAAAGGATTATTTAAGGTGT
Found at i:7654057 original size:127 final size:126
Alignment explanation
Indices: 7653838--7654255 Score: 317
Period size: 123 Copynumber: 3.3 Consensus size: 126
7653828 AAATTGAAAA
* **
7653838 GGATTATTGAAGGCATTTTTTGCAAAAAAATACCTTCAATAATTTCTTTTAAAATTTTTCAAAGG
1 GGATTATTGAAGGAATTTTTTGCAAAAAAATACCTTCAATAATTTCTTTTAAAATAATTCAAAGG
* * * * *
7653903 ATTATTTAAGGTGTATTTTTATTAAAAATGCCTTCCATAATACCTTGATAAAAAATTAGAGG
66 ATTATTGAAGATG-ATTTTTATCAAAAACGCCTTCAATAATACCTTGATAAAAAATTAGAGG
7653965 GGATTATTGAAGGAATTTTTTGCAAAAAAAATACCTTCAATAATTT-TCTTTAAAA-AATT-AAA
1 GGATTATTGAAGGAATTTTTTGC-AAAAAAATACCTTCAATAATTTCT-TTTAAAATAATTCAAA
*
7654027 TGAGATTATTGAAGATG-TTTTTAGTCAAAAACGCCTTCAATAAT-CTCTTCG-T-CAAAA-TAG
64 -G-GATTATTGAAGATGATTTTTA-TCAAAAACGCCTTCAATAATAC-CTT-GATAAAAAATTAG
*
7654087 AAAG
124 -AGG
** * * * * * * * *
7654091 GGATTATTGAAGGCGTTTTATGC-AAAAAATGCCATGAATGA-TT-TTTTAAAAGAATTTAAGGG
1 GGATTATTGAAGGAATTTTTTGCAAAAAAATACCTTCAATAATTTCTTTTAAAATAATTCAA-AG
** * * ** ** *
7654153 GATTATTGAAGGCG-TTTTCT-TAAAAATACACCTTCAATAATTTCTT-ATAAAAAATTTCAAG
65 GATTATTGAAGATGATTTT-TATCAAAA-ACGCCTTCAATAATACCTTGATAAAAAATTAGAGG
* * * **
7654214 GGATTATTAAAGGTATTTTTAG-GTAAAAATACCTTCAATAAT
1 GGATTATTGAAGGAATTTTTTGCAAAAAAATACCTTCAATAAT
7654256 CCCCTGATAA
Statistics
Matches: 236, Mismatches: 36, Indels: 41
0.75 0.12 0.13
Matches are distributed among these distances:
122 13 0.06
123 76 0.32
124 19 0.08
125 3 0.01
126 36 0.15
127 47 0.20
128 42 0.18
ACGTcount: A:0.39, C:0.10, G:0.14, T:0.37
Consensus pattern (126 bp):
GGATTATTGAAGGAATTTTTTGCAAAAAAATACCTTCAATAATTTCTTTTAAAATAATTCAAAGG
ATTATTGAAGATGATTTTTATCAAAAACGCCTTCAATAATACCTTGATAAAAAATTAGAGG
Found at i:7654316 original size:125 final size:125
Alignment explanation
Indices: 7654154--7654399 Score: 302
Period size: 125 Copynumber: 2.0 Consensus size: 125
7654144 ATTTAAGGGG
* *
7654154 ATTATTGAAGGCGTTTTCTTAAAAATACACCTTCAATAA-TTTCTTATAAAAAA-TTTCAAGGGA
1 ATTATTGAAGACGTTTTCTTAAAAATACACATTCAATAATTTTCTT-TAAAAAAGTTT-AAGGGA
* *
7654217 TTATTAAAGG-TATTTTTAGGTAAAAATACCTTCAATAATCCCCTGATAAAAAATTGAAAGAT
64 TTATTAAAGGATATTTTTA-CTAAAAACACCTTCAATAATCCCCTGATAAAAAATTGAAAGAT
* ** *
7654279 ATTATTGAAGACGTTTT-TTGCAAAATATGCATTCAATAATTTTCTTTAAAAAAGTTTAGGGGAT
1 ATTATTGAAGACGTTTTCTT-AAAAATACACATTCAATAATTTTCTTTAAAAAAGTTTAAGGGAT
* * * *
7654343 TATTGAAGGCATTTTTTTTACTTAAAACACCTTCAATAATCCCCTGATAAATAATTG
65 TATTAAAGG-A-TATTTTTACTAAAAACACCTTCAATAATCCCCTGATAAAAAATTG
7654400 GAGTAAATTA
Statistics
Matches: 103, Mismatches: 12, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
124 2 0.02
125 52 0.50
126 9 0.09
127 33 0.32
128 7 0.07
ACGTcount: A:0.39, C:0.12, G:0.12, T:0.37
Consensus pattern (125 bp):
ATTATTGAAGACGTTTTCTTAAAAATACACATTCAATAATTTTCTTTAAAAAAGTTTAAGGGATT
ATTAAAGGATATTTTTACTAAAAACACCTTCAATAATCCCCTGATAAAAAATTGAAAGAT
Found at i:7654359 original size:62 final size:60
Alignment explanation
Indices: 7653828--7654359 Score: 278
Period size: 62 Copynumber: 8.5 Consensus size: 60
7653818 CCCTGATAGC
*
7653828 AAATTGAAAAGGATTATTGAAGGCATTTTTTGCAAAAAAATACCTTCAATAA-TTTCTTTTAAA
1 AAATT-AAAGGGATTATTGAAGGCATTTTTTGC--AAAAATACCTTCAATAATTTTC-TTTAAA
** * * * * * **
7653891 ATTTTTCAAA-GGATTATTTAAGGTGTATTTTTAT-TAAAAATGCCTTCCATAA-TACCTTGATA
1 A-AATT-AAAGGGATTATTGAA-G-GCATTTTT-TGCAAAAATACCTTCAATAATTTTCTT--TA
7653953 AA
59 AA
* *
7653955 AAATTAGAGGGGATTATTGAAGGAATTTTTTGCAAAAAAAATACCTTCAATAATTTTCTTTAAA
1 AAATTA-AAGGGATTATTGAAGGCATTTTTTGC---AAAAATACCTTCAATAATTTTCTTTAAA
* ** * *
7654019 AAATTAAATGAGATTATTGAA-G-ATGTTTTTAGTCAAAAACGCCTTCAATAATCTCTTCGTCAA
1 AAATTAAA-GGGATTATTGAAGGCAT-TTTTT-G-CAAAAATACCTTCAATAAT-T-TTCTTTAA
7654082 A
60 A
* * * * * * * *
7654083 ATA-GAAAGGGATTATTGAAGGCGTTTTATGCAAAAAATGCCATGAATGA-TTT-TTTAAA
1 AAATTAAAGGGATTATTGAAGGCATTTTTTGC-AAAAATACCTTCAATAATTTTCTTTAAA
* *
7654141 AGAATTTAAGGGGATTATTGAAGGCGTTTTCTT--AAAAATACACCTTCAATAA-TTTCTTATAA
1 A-AA-TTAAAGGGATTATTGAAGGCATTTT-TTGCAAAAAT--ACCTTCAATAATTTTCTT-TAA
7654203 A
60 A
* * * * * *** *
7654204 AAATTTCAAGGGATTATTAAAGGTATTTTTAGGTAAAAATACCTTCAATAATCCCCTGATAAA
1 AAA-TTAAAGGGATTATTGAAGGCATTTTT-TGCAAAAATACCTTCAATAATTTTCT-TTAAA
** * * * *
7654267 AAATTGAAAGATATTATTGAAGACGTTTTTTGCAAAATATGCATTCAATAATTTTCTTTAAA
1 AAATT-AAAGGGATTATTGAAGGCATTTTTTGCAAAA-ATACCTTCAATAATTTTCTTTAAA
* *
7654329 AAAGTTTAGGGGATTATTGAAGGCATTTTTT
1 AAA-TTAAAGGGATTATTGAAGGCATTTTTT
7654360 TTACTTAAAA
Statistics
Matches: 355, Mismatches: 76, Indels: 77
0.70 0.15 0.15
Matches are distributed among these distances:
58 5 0.01
59 9 0.03
60 1 0.00
61 35 0.10
62 123 0.35
63 95 0.27
64 59 0.17
65 23 0.06
66 5 0.01
ACGTcount: A:0.39, C:0.10, G:0.14, T:0.37
Consensus pattern (60 bp):
AAATTAAAGGGATTATTGAAGGCATTTTTTGCAAAAATACCTTCAATAATTTTCTTTAAA
Found at i:7659483 original size:13 final size:14
Alignment explanation
Indices: 7659465--7659502 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
7659455 CTTCTCAATG
7659465 TCTTTATATATG-T
1 TCTTTATATATGTT
*
7659478 TCTTTACATATGTT
1 TCTTTATATATGTT
*
7659492 TTTTTATATAT
1 TCTTTATATAT
7659503 TCGCTTTTAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
13 11 0.52
14 10 0.48
ACGTcount: A:0.24, C:0.08, G:0.05, T:0.63
Consensus pattern (14 bp):
TCTTTATATATGTT
Found at i:7661112 original size:161 final size:160
Alignment explanation
Indices: 7660692--7661441 Score: 733
Period size: 160 Copynumber: 4.7 Consensus size: 160
7660682 GGTAATAATG
* * * * * *
7660692 CAAATTT-ATAGTTATTGTTTTGTTTTTATAGTTTTGATAGTTTCAATACATGATATTAAACTTA
1 CAAATTTGATA-TTATTG-TCTATTTTAATAGTTTGGATAGCTTCAATACATGATATTAAACTTG
* * * * * * * * *
7660756 TCCAAATTATTGAATTTAGTTTCCACAATTGATATGTATGAAAAAGTTATTATTTACGTATATTT
64 TTCGAATGATTGAACTTGGTTTCCACAGTTGATATGTGTGAAAAAGTTATTGTTTACGTCTATTT
* * *
7660821 AGGACATTTTGTGCCGTTAATAGGTAAAAATA
129 AGGACATTTTGTGCTGTTAAAAGGCAAAAATA
* * * * *
7660853 CAAATTTGGACA-AATTGTCTATTTTAACAGTTTGGATTGCTCCAATACATGATATTAAACTTGT
1 CAAATTT-GATATTATTGTCTATTTTAATAGTTTGGATAGCTTCAATACATGATATTAAACTTGT
* * *
7660917 CCGAATGATTGAACTTGGTTTCCACAGTTGATATGTGTGAAAAAGTTATTGTTTACGTTTGTTTA
65 TCGAATGATTGAACTTGGTTTCCACAGTTGATATGTGTGAAAAAGTTATTGTTTACGTCTATTTA
* * * * * *
7660982 AGACTTTTTGTGCTATTAAGAGG-AAAGCATG
130 GGACATTTTGTGCTGTTAAAAGGCAAA-AATA
* * * * *
7661013 CAAATTTGTTGTTATTGTCCTATTCTAATAGTTTGCATAGCTTCAATAAATGATATTAAACTTGT
1 CAAATTTGATATTATTGT-CTATTTTAATAGTTTGGATAGCTTCAATACATGATATTAAACTTGT
* * * ** * * *
7661078 TGGAATAATTGAACTTGGTTTCCACAGTTGATATGTGTGAAAAAGCTAACGTTTATGTCTGTTGA
65 TCGAATGATTGAACTTGGTTTCCACAGTTGATATGTGTGAAAAAGTTATTGTTTACGTCTATTTA
* *
7661143 GGACATTTTATGCTGTTAAAAGGC-AAAATG
130 GGACATTTTGTGCTGTTAAAAGGCAAAAATA
** * *
7661173 TTAATTTGATATTATTGTTCTACTTTAATAGTTTGGACAGCTTCAATACATGATATTAAACTTGT
1 CAAATTTGATATTATTG-TCTATTTTAATAGTTTGGATAGCTTCAATACATGATATTAAACTTGT
* * ** * * *
7661238 AT-GAACGATTGAACTTGGTTTCTAGGGTTGATATGTGTAAAAAAGTTGTTGTTTATGTCTATTT
65 -TCGAATGATTGAACTTGGTTTCCACAGTTGATATGTGTGAAAAAGTTATTGTTTACGTCTATTT
* * *
7661302 GGGACTTTTTTTTG-TCGTTAAAAGGCAAAAATA
129 AGGAC-ATTTTGTGCT-GTTAAAAGGCAAAAATA
* * * *
7661335 CAAATTTGCTATTATTAATCTATTTTAACAGTTTGGATGGCTTCAATACATGATATTAAACCTT-
1 CAAATTTGATATTATT-GTCTATTTTAATAGTTTGGATAGCTTCAATACATGATATTAAA-CTTG
* *
7661399 TTCGAATGATTGAACTTGGTTTCCA-TGATTGATATATGTGAAA
64 TTCGAATGATTGAACTTGGTTTCCACAG-TTGATATGTGTGAAA
7661442 GGCCCAAATT
Statistics
Matches: 484, Mismatches: 90, Indels: 29
0.80 0.15 0.05
Matches are distributed among these distances:
159 4 0.01
160 238 0.49
161 147 0.30
162 90 0.19
163 5 0.01
ACGTcount: A:0.31, C:0.10, G:0.17, T:0.41
Consensus pattern (160 bp):
CAAATTTGATATTATTGTCTATTTTAATAGTTTGGATAGCTTCAATACATGATATTAAACTTGTT
CGAATGATTGAACTTGGTTTCCACAGTTGATATGTGTGAAAAAGTTATTGTTTACGTCTATTTAG
GACATTTTGTGCTGTTAAAAGGCAAAAATA
Found at i:7661208 original size:321 final size:320
Alignment explanation
Indices: 7660719--7661441 Score: 758
Period size: 321 Copynumber: 2.2 Consensus size: 320
7660709 TTTTGTTTTT
* * * * * * *
7660719 ATAGTTTTGATAGTTTCAATACATGATATTAAACTTATCCAAATTATTGAATTTAGTTTCCACAA
1 ATAG-TTTGATAGCTTCAATACATGATATTAAACTT-TTCGAATAATTGAACTTGGTTTCCACAG
* * ** * * *
7660784 TTGATATGTATGAAAAAGTTATTATTTACGTATATTTAGGACATTTTGTGCCGTTAATAGGTAAA
64 TTGATATGTGTGAAAAAGCTAACATTTACGTATATTGAGGACATTTTATGCCGTTAAAAGGTAAA
* **
7660849 AATACAAATTTGGACAAATTGTCTATTTTAACAGTTTGGATTGCTCCAATACATGATATTAAACT
129 AATACAAATTTGGACAAATTGTCTACTTTAACAGTTTGGACAGCTCCAATACATGATATTAAACT
* * * * *
7660914 TGTCCGAATGATTGAACTTGGTTTCCACAGTTGATATGTGTGAAAAAGTTATTGTTTACGTTTGT
194 TGTACGAACGATTGAACTTGGTTTCCACAGTTGATATGTGTAAAAAAGTTATTGTTTACGTCTAT
* * * * * *
7660979 TTAAGAC-TTTTTGTG-CTATTAAGAGG-AAAGCATGCAAATTTGTTGTTATT-GTCCTATTCTA
259 TTAAGACTTTTTTGTGTC-ATTAAAAGGCAAA-AATACAAATTTGCTATTATTAAT-CTATTCTA
* *
7661040 ATAGTTTGCATAGCTTCAATAAATGATATTAAACTTGTTGGAATAATTGAACTTGGTTTCCACAG
1 ATAGTTTG-ATAGCTTCAATACATGATATTAAACTT-TTCGAATAATTGAACTTGGTTTCCACAG
* * * * * *
7661105 TTGATATGTGTGAAAAAGCTAACGTTTATGTCTGTTGAGGACATTTTATGCTGTTAAAAGG-CAA
64 TTGATATGTGTGAAAAAGCTAACATTTACGTATATTGAGGACATTTTATGCCGTTAAAAGGTAAA
*** * * * *
7661169 AATGTTAATTT-GATATTATTGTTCTACTTTAATAGTTTGGACAGCTTCAATACATGATATTAAA
129 AATACAAATTTGGACA-AATTG-TCTACTTTAACAGTTTGGACAGCTCCAATACATGATATTAAA
* * ** * *
7661233 CTTGTATGAACGATTGAACTTGGTTTCTAGGGTTGATATGTGTAAAAAAGTTGTTGTTTATGTCT
192 CTTGTACGAACGATTGAACTTGGTTTCCACAGTTGATATGTGTAAAAAAGTTATTGTTTACGTCT
** * * *
7661298 ATTTGGGACTTTTTTTTGTCGTTAAAAGGCAAAAATACAAATTTGCTATTATTAATCTATTTTA
257 ATTTAAGACTTTTTTGTGTCATTAAAAGGCAAAAATACAAATTTGCTATTATTAATCTATTCTA
* * * *
7661362 ACAGTTTGGATGGCTTCAATACATGATATTAAACCTTTTCGAATGATTGAACTTGGTTTCCA-TG
1 ATAGTTT-GATAGCTTCAATACATGATATTAAA-CTTTTCGAATAATTGAACTTGGTTTCCACAG
*
7661426 ATTGATATATGTGAAA
64 -TTGATATGTGTGAAA
7661442 GGCCCAAATT
Statistics
Matches: 330, Mismatches: 62, Indels: 19
0.80 0.15 0.05
Matches are distributed among these distances:
319 3 0.01
320 18 0.05
321 198 0.60
322 102 0.31
323 9 0.03
ACGTcount: A:0.32, C:0.11, G:0.17, T:0.41
Consensus pattern (320 bp):
ATAGTTTGATAGCTTCAATACATGATATTAAACTTTTCGAATAATTGAACTTGGTTTCCACAGTT
GATATGTGTGAAAAAGCTAACATTTACGTATATTGAGGACATTTTATGCCGTTAAAAGGTAAAAA
TACAAATTTGGACAAATTGTCTACTTTAACAGTTTGGACAGCTCCAATACATGATATTAAACTTG
TACGAACGATTGAACTTGGTTTCCACAGTTGATATGTGTAAAAAAGTTATTGTTTACGTCTATTT
AAGACTTTTTTGTGTCATTAAAAGGCAAAAATACAAATTTGCTATTATTAATCTATTCTA
Found at i:7663597 original size:3 final size:3
Alignment explanation
Indices: 7663589--7663622 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
7663579 TCTCCCTTTG
7663589 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
7663623 AAATATAAGA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:7664817 original size:13 final size:13
Alignment explanation
Indices: 7664792--7664847 Score: 76
Period size: 13 Copynumber: 4.3 Consensus size: 13
7664782 GAGAGGTTTG
*
7664792 TAAAATAAAACCC
1 TAAAATGAAACCC
*
7664805 TAGAATGAAACCC
1 TAAAATGAAACCC
*
7664818 TAAAATGAAACTC
1 TAAAATGAAACCC
*
7664831 TAAAATGAATCCC
1 TAAAATGAAACCC
7664844 TAAA
1 TAAA
7664848 CCCTATTTGC
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 37 1.00
ACGTcount: A:0.54, C:0.20, G:0.07, T:0.20
Consensus pattern (13 bp):
TAAAATGAAACCC
Found at i:7665340 original size:19 final size:19
Alignment explanation
Indices: 7665279--7665325 Score: 85
Period size: 19 Copynumber: 2.5 Consensus size: 19
7665269 GCATCATTGG
*
7665279 TTTTTTTGCATAAATATGT
1 TTTTTTTGTATAAATATGT
7665298 TTTTTTTGTATAAATATGT
1 TTTTTTTGTATAAATATGT
7665317 TTTTTTTGT
1 TTTTTTTGT
7665326 GAAAAATGTT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.21, C:0.02, G:0.11, T:0.66
Consensus pattern (19 bp):
TTTTTTTGTATAAATATGT
Found at i:7668655 original size:24 final size:24
Alignment explanation
Indices: 7668623--7668756 Score: 119
Period size: 24 Copynumber: 5.5 Consensus size: 24
7668613 AAAAGTTTAT
* *
7668623 CTTGCATAAATGATAAATTTTGGA
1 CTTGTATAAATGATAAAATTTGGA
* * *
7668647 TTTGTATAAATAAAACAAATTTGGA
1 CTTGTATAAATGATA-AAATTTGGA
7668672 CTTGTATAAATGATAAAATTTGGA
1 CTTGTATAAATGATAAAATTTGGA
* ** * *
7668696 CTTTTCCATATGA-ACAAATTTGCA
1 CTTGTATAAATGATA-AAATTTGGA
*
7668720 CTTGTATAAATGA-ATAAATTTTGA
1 CTTGTATAAATGATA-AAATTTGGA
*
7668744 CTTGTATTAATGA
1 CTTGTATAAATGA
7668757 CAATTTTGGT
Statistics
Matches: 87, Mismatches: 21, Indels: 4
0.78 0.19 0.04
Matches are distributed among these distances:
23 1 0.01
24 66 0.76
25 20 0.23
ACGTcount: A:0.40, C:0.08, G:0.13, T:0.39
Consensus pattern (24 bp):
CTTGTATAAATGATAAAATTTGGA
Found at i:7668686 original size:49 final size:50
Alignment explanation
Indices: 7668623--7668750 Score: 156
Period size: 49 Copynumber: 2.6 Consensus size: 50
7668613 AAAAGTTTAT
* * *
7668623 CTTGCATAAATGATAAATTTTGGATTTGTATAAATA-AAACAAATTTGGA
1 CTTGTATAAATGATAAATTTTGGACTTGTATAAATATAAACAAATTTGCA
* ** *
7668672 CTTGTATAAATGATAAAATTTGGACTT-T-TCCATATGAACAAATTTGCA
1 CTTGTATAAATGATAAATTTTGGACTTGTATAAATATAAACAAATTTGCA
7668720 CTTGTATAAATGAATAAATTTT-GACTTGTAT
1 CTTGTATAAATG-ATAAATTTTGGACTTGTAT
7668751 TAATGACAAT
Statistics
Matches: 67, Mismatches: 8, Indels: 7
0.82 0.10 0.09
Matches are distributed among these distances:
47 4 0.06
48 29 0.43
49 33 0.49
50 1 0.01
ACGTcount: A:0.39, C:0.09, G:0.13, T:0.39
Consensus pattern (50 bp):
CTTGTATAAATGATAAATTTTGGACTTGTATAAATATAAACAAATTTGCA
Found at i:7672763 original size:38 final size:38
Alignment explanation
Indices: 7672689--7672763 Score: 89
Period size: 38 Copynumber: 2.0 Consensus size: 38
7672679 TTTTTAGAAA
* * **
7672689 TATCTTCTAATATTTTGGTAAGATTTTTTGTCAAAAAT
1 TATCTTCTAATATGTTGGTAAGATTTTATGAAAAAAAT
*
7672727 TATCTT-TCAATATGTTGGTAGGATTTTATGAAAAAAA
1 TATCTTCT-AATATGTTGGTAAGATTTTATGAAAAAAA
7672764 AACTATTTTT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
37 1 0.03
38 30 0.97
ACGTcount: A:0.35, C:0.07, G:0.13, T:0.45
Consensus pattern (38 bp):
TATCTTCTAATATGTTGGTAAGATTTTATGAAAAAAAT
Found at i:7673064 original size:4 final size:4
Alignment explanation
Indices: 7673023--7673076 Score: 51
Period size: 4 Copynumber: 14.0 Consensus size: 4
7673013 TCATGTATTT
* * *
7673023 ATAA ACAA ATAA TTAA A-AA ATTAA A-AA ATAT A-AA ATAA ATAA ATAA
1 ATAA ATAA ATAA ATAA ATAA A-TAA ATAA ATAA ATAA ATAA ATAA ATAA
7673069 ATAA ATAA
1 ATAA ATAA
7673077 TTTAACAAAA
Statistics
Matches: 40, Mismatches: 6, Indels: 8
0.74 0.11 0.15
Matches are distributed among these distances:
3 8 0.20
4 29 0.73
5 3 0.08
ACGTcount: A:0.74, C:0.02, G:0.00, T:0.24
Consensus pattern (4 bp):
ATAA
Found at i:7673066 original size:15 final size:16
Alignment explanation
Indices: 7673023--7673100 Score: 52
Period size: 16 Copynumber: 4.6 Consensus size: 16
7673013 TCATGTATTT
* *
7673023 ATAAACAAATAATTAA
1 ATAAATAAAAAATTAA
7673039 A-AAATTAAAAAATATAAA
1 ATAAA-TAAAAAAT-T-AA
7673057 ATAAATAAATAAA-TAA
1 ATAAATAAA-AAATTAA
*
7673073 ATAATTTAACAAAATTAA
1 ATAA-ATAA-AAAATTAA
*
7673091 ATGAATAAAA
1 ATAAATAAAA
7673101 TAAAAAATAC
Statistics
Matches: 49, Mismatches: 5, Indels: 16
0.70 0.07 0.23
Matches are distributed among these distances:
15 3 0.06
16 15 0.31
17 11 0.22
18 14 0.29
19 6 0.12
ACGTcount: A:0.71, C:0.03, G:0.01, T:0.26
Consensus pattern (16 bp):
ATAAATAAAAAATTAA
Found at i:7673067 original size:34 final size:34
Alignment explanation
Indices: 7673023--7673109 Score: 58
Period size: 30 Copynumber: 2.6 Consensus size: 34
7673013 TCATGTATTT
* * *
7673023 ATAAACAAATAATTAAA-AAATTAA-AAAA-TAT
1 ATAAATAAATAAATAAATAAATTAACAAAATTAA
7673054 A-AAATAAATAAATAAATAAATAATTTAACAAAATTAA
1 ATAAATAAATAAATAAAT--A-AA-TTAACAAAATTAA
*
7673091 ATGAATAAAATAAA-AAATA
1 ATAAAT-AAATAAATAAATA
7673110 CCAGATTCAG
Statistics
Matches: 43, Mismatches: 4, Indels: 13
0.72 0.07 0.22
Matches are distributed among these distances:
30 13 0.30
31 1 0.02
33 1 0.02
34 2 0.05
35 4 0.09
36 5 0.12
37 3 0.07
38 7 0.16
39 7 0.16
ACGTcount: A:0.71, C:0.02, G:0.01, T:0.25
Consensus pattern (34 bp):
ATAAATAAATAAATAAATAAATTAACAAAATTAA
Found at i:7673073 original size:26 final size:26
Alignment explanation
Indices: 7673029--7673100 Score: 76
Period size: 26 Copynumber: 2.8 Consensus size: 26
7673019 ATTTATAAAC
7673029 AAATAATTAAA-AAATTAAAAAATATA
1 AAATAATTAAATAAA-TAAAAAATATA
* * *
7673055 AAATAAATAAATAAATAAATAATTTA
1 AAATAATTAAATAAATAAAAAATATA
*
7673081 ACAA-AATTAAATGAATAAAA
1 A-AATAATTAAATAAATAAAA
7673101 TAAAAAATAC
Statistics
Matches: 38, Mismatches: 6, Indels: 4
0.79 0.12 0.08
Matches are distributed among these distances:
26 33 0.87
27 5 0.13
ACGTcount: A:0.71, C:0.01, G:0.01, T:0.26
Consensus pattern (26 bp):
AAATAATTAAATAAATAAAAAATATA
Found at i:7675132 original size:21 final size:21
Alignment explanation
Indices: 7675106--7675148 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
7675096 ATAACCATAT
7675106 AAAAAATAAAAGCCAACATGC
1 AAAAAATAAAAGCCAACATGC
7675127 AAAAAATAAAAGCCAACATGC
1 AAAAAATAAAAGCCAACATGC
7675148 A
1 A
7675149 TGAGAATGAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.63, C:0.19, G:0.09, T:0.09
Consensus pattern (21 bp):
AAAAAATAAAAGCCAACATGC
Found at i:7675545 original size:28 final size:28
Alignment explanation
Indices: 7675495--7675548 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 28
7675485 GCAAACAGAA
*
7675495 ACTAAAAATATACTACAACAGAAACAAG
1 ACTAAAAATATACAACAACAGAAACAAG
* **
7675523 ACTAGAAATATACAACAGTAGAAACA
1 ACTAAAAATATACAACAACAGAAACA
7675549 GGAAACAAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 22 1.00
ACGTcount: A:0.59, C:0.17, G:0.09, T:0.15
Consensus pattern (28 bp):
ACTAAAAATATACAACAACAGAAACAAG
Found at i:7675568 original size:36 final size:36
Alignment explanation
Indices: 7675526--7675632 Score: 133
Period size: 36 Copynumber: 3.0 Consensus size: 36
7675516 AAACAAGACT
* * *
7675526 AGAAATATACAACAGTAGAAACAGGAAACAAAAACC
1 AGAAATATACTATAGTAGAAACAAGAAACAAAAACC
* * * *
7675562 AGAAATATACTATGGCAAAAACAAGAAATAAAAACC
1 AGAAATATACTATAGTAGAAACAAGAAACAAAAACC
* *
7675598 AGAAATACACTATAGTAGAAACATGAAACAAAAAC
1 AGAAATATACTATAGTAGAAACAAGAAACAAAAAC
7675633 TAAAAGGCAC
Statistics
Matches: 58, Mismatches: 13, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
36 58 1.00
ACGTcount: A:0.61, C:0.15, G:0.12, T:0.12
Consensus pattern (36 bp):
AGAAATATACTATAGTAGAAACAAGAAACAAAAACC
Found at i:7675743 original size:22 final size:23
Alignment explanation
Indices: 7675705--7675748 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
7675695 GAAGTAGTAA
*
7675705 CATGGAGCAGAAAAAAAAGGAAT
1 CATGCAGCAGAAAAAAAAGGAAT
*
7675728 CATGCAGCA-AAAAAAATGGAA
1 CATGCAGCAGAAAAAAAAGGAA
7675749 GATGGAAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 11 0.58
23 8 0.42
ACGTcount: A:0.57, C:0.11, G:0.23, T:0.09
Consensus pattern (23 bp):
CATGCAGCAGAAAAAAAAGGAAT
Found at i:7677061 original size:26 final size:26
Alignment explanation
Indices: 7677009--7677062 Score: 63
Period size: 26 Copynumber: 2.1 Consensus size: 26
7676999 TAAAAGTCTC
* * *
7677009 AAAACTAAAAACTTAGATGAAATCCT
1 AAAACTAAAAACTTAAATAAAACCCT
* *
7677035 AAAATTAAAACCTTAAATAAAACCCT
1 AAAACTAAAAACTTAAATAAAACCCT
7677061 AA
1 AA
7677063 CGTCAAAACC
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.57, C:0.17, G:0.04, T:0.22
Consensus pattern (26 bp):
AAAACTAAAAACTTAAATAAAACCCT
Found at i:7677070 original size:14 final size:15
Alignment explanation
Indices: 7677053--7677087 Score: 54
Period size: 14 Copynumber: 2.4 Consensus size: 15
7677043 AACCTTAAAT
7677053 AAAACCCTAACGTC-
1 AAAACCCTAACGTCG
*
7677067 AAAACCCTAAGGTCG
1 AAAACCCTAACGTCG
7677082 AAAACC
1 AAAACC
7677088 TAAATAAAAC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 13 0.68
15 6 0.32
ACGTcount: A:0.46, C:0.31, G:0.11, T:0.11
Consensus pattern (15 bp):
AAAACCCTAACGTCG
Found at i:7677096 original size:26 final size:26
Alignment explanation
Indices: 7677067--7677154 Score: 101
Period size: 26 Copynumber: 3.4 Consensus size: 26
7677057 CCCTAACGTC
7677067 AAAACCCTAAGGTCGAAAACCTAAAT
1 AAAACCCTAAGGTCGAAAACCTAAAT
7677093 AAAACCCTAAGGAT-G-AAACCTTAAAT
1 AAAACCCTAAGG-TCGAAAACC-TAAAT
**
7677119 AAATGCCTAAGGTC-AAAATCCTAAAT
1 AAAACCCTAAGGTCGAAAA-CCTAAAT
*
7677145 GAAACCCTAA
1 AAAACCCTAA
7677155 ACATACCAAA
Statistics
Matches: 52, Mismatches: 5, Indels: 10
0.78 0.07 0.15
Matches are distributed among these distances:
25 6 0.12
26 43 0.83
27 3 0.06
ACGTcount: A:0.49, C:0.22, G:0.11, T:0.18
Consensus pattern (26 bp):
AAAACCCTAAGGTCGAAAACCTAAAT
Found at i:7681218 original size:3 final size:3
Alignment explanation
Indices: 7681199--7681241 Score: 50
Period size: 3 Copynumber: 14.3 Consensus size: 3
7681189 AAAAGCAAAT
* * * *
7681199 TAA TAG TAA TGA TAA TAA TAT TAA TAA TAA TAA CAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
7681242 TATACCATGT
Statistics
Matches: 32, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.58, C:0.02, G:0.05, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:7688606 original size:12 final size:12
Alignment explanation
Indices: 7688589--7688622 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
7688579 ATTTTGCTTG
*
7688589 AAAAAAAATAAA
1 AAAAAAAAGAAA
7688601 AAAAAAAAGAAA
1 AAAAAAAAGAAA
*
7688613 AAAAGAAAGA
1 AAAAAAAAGA
7688623 TTTGAACTGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.88, C:0.00, G:0.09, T:0.03
Consensus pattern (12 bp):
AAAAAAAAGAAA
Found at i:7690693 original size:8 final size:8
Alignment explanation
Indices: 7690680--7690732 Score: 79
Period size: 8 Copynumber: 6.6 Consensus size: 8
7690670 ATTTAAATTT
7690680 AAATTTAA
1 AAATTTAA
7690688 AAATTTAA
1 AAATTTAA
*
7690696 AAACTTAA
1 AAATTTAA
*
7690704 AAACTTAA
1 AAATTTAA
*
7690712 AATTTTAA
1 AAATTTAA
7690720 AAATTTAA
1 AAATTTAA
7690728 AAATT
1 AAATT
7690733 AAGAAATAAT
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 41 1.00
ACGTcount: A:0.60, C:0.04, G:0.00, T:0.36
Consensus pattern (8 bp):
AAATTTAA
Found at i:7690711 original size:24 final size:23
Alignment explanation
Indices: 7690684--7690739 Score: 76
Period size: 24 Copynumber: 2.3 Consensus size: 23
7690674 AAATTTAAAT
7690684 TTAAAAATTTAAAAACTTAAAAA
1 TTAAAAATTTAAAAACTTAAAAA
* *
7690707 CTTAAAATTTTAAAAATTTAAAAA
1 -TTAAAAATTTAAAAACTTAAAAA
7690731 TTAAGAAAT
1 TTAA-AAAT
7690740 AATAATATAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
23 4 0.14
24 24 0.86
ACGTcount: A:0.61, C:0.04, G:0.02, T:0.34
Consensus pattern (23 bp):
TTAAAAATTTAAAAACTTAAAAA
Found at i:7690739 original size:8 final size:7
Alignment explanation
Indices: 7690674--7690739 Score: 51
Period size: 8 Copynumber: 8.6 Consensus size: 7
7690664 AATTAAATTT
*
7690674 AAATTTA
1 AAATTAA
*
7690681 AATTTAA
1 AAATTAA
7690688 AAATTTAA
1 AAA-TTAA
7690696 AAACTTAA
1 AAA-TTAA
7690704 AAACTTAA
1 AAA-TTAA
*
7690712 AATTTTAA
1 AA-ATTAA
7690720 AAATTTAA
1 AAA-TTAA
7690728 AAATTAA
1 AAATTAA
7690735 GAAAT
1 -AAAT
7690740 AATAATATAA
Statistics
Matches: 49, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
7 11 0.22
8 38 0.78
ACGTcount: A:0.61, C:0.03, G:0.02, T:0.35
Consensus pattern (7 bp):
AAATTAA
Found at i:7690739 original size:16 final size:15
Alignment explanation
Indices: 7690674--7690739 Score: 71
Period size: 16 Copynumber: 4.3 Consensus size: 15
7690664 AATTAAATTT
*
7690674 AAATTT-AAATTTAA
1 AAATTTAAAAATTAA
7690688 AAATTTAAAAACTTAA
1 AAATTTAAAAA-TTAA
* *
7690704 AAACTTAAAATTTTAA
1 AAATTTAAAA-ATTAA
7690720 AAATTTAAAAATTAA
1 AAATTTAAAAATTAA
7690735 GAAAT
1 -AAAT
7690740 AATAATATAA
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
14 6 0.14
15 7 0.16
16 30 0.70
ACGTcount: A:0.61, C:0.03, G:0.02, T:0.35
Consensus pattern (15 bp):
AAATTTAAAAATTAA
Done.