Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 370 of 402
Found at i:33738646 original size:159 final size:158
Alignment explanation
Indices: 33738263--33738715 Score: 344
Period size: 159 Copynumber: 2.9 Consensus size: 158
33738253 CTTCATATGC
* * * * ** **
33738263 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAATGAACGTGTG-GACACTCAGC
1 TTAGGCATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCATACGAG-TGCTCAGC
* ** * * * * * * * *
33738327 TGGTCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCTGATCCCCCCCTGCGTGCTGTCAATCC
65 CGAACGGACAGGCAAAATGCGCAAGTCGAGGATCAGCCCGAT-CCCCCCTACATGCTGTCGATCC
* * * ** * *
33738392 TACTACCGCAACCCTCGGTTTGGTCT--GAT
129 TGCTGCCACAACCCTCGG-TCCGACTGGGGT
* ** * * ** *
33738421 CATATAC-TGGGAATGAATTCCGTATGCCTAAGTCAACCCATGAAATGAGTGTACGAGTGCTGAG
1 -TTAGGCAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCATACGAGTGCTCAG
* * * * *** *
33738485 CCGAACGGAGAGGCATAATGCGCAAGTCGAGGATCGGCCCGGTCCCCCTCTGTGTGCTGTCGGTC
64 CCGAACGGACAGGCAAAATGCGCAAGTCGAGGATCAGCCCGATCCCCC-CTACATGCTGTCGATC
33738550 CTGCTGCCACAACCCTCGGTCCGACTGGGGT
128 CTGCTGCCACAACCCTCGGTCCGACTGGGGT
33738581 TTAGGCATGGAATGAACTCAC-TATGCCTAAGCCAACCCATGAAACTG-GCATACG-GTCGCTCA
1 TTAGGCATGGAATGAACTC-CGTATGCCTAAGCCAACCCATGAAA-TGAGCATACGAGT-GCTCA
** * * * *
33738643 GCCGGTCGGACAGGCAAAATGTGCAAGTGGGGGATTAGCCCGATCCCCCCTACATGCTGTCGATC
63 GCCGAACGGACAGGCAAAATGCGCAAGTCGAGGATCAGCCCGATCCCCCCTACATGCTGTCGATC
33738708 CTGCTGCC
128 CTGCTGCC
33738716 GTAACTTTCG
Statistics
Matches: 234, Mismatches: 51, Indels: 19
0.77 0.17 0.06
Matches are distributed among these distances:
158 32 0.14
159 195 0.83
160 7 0.03
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.21
Consensus pattern (158 bp):
TTAGGCATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCATACGAGTGCTCAGCC
GAACGGACAGGCAAAATGCGCAAGTCGAGGATCAGCCCGATCCCCCCTACATGCTGTCGATCCTG
CTGCCACAACCCTCGGTCCGACTGGGGT
Found at i:33740002 original size:26 final size:26
Alignment explanation
Indices: 33739963--33740013 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
33739953 GGTTTGATCA
33739963 TAGACTGGGAATGAACTCTATATGCT
1 TAGACTGGGAATGAACTCTATATGCT
* * *
33739989 TAGATTGGGGATGAACTCTGTATGC
1 TAGACTGGGAATGAACTCTATATGC
33740014 CTAAGTCAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.14, G:0.27, T:0.31
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCTATATGCT
Found at i:33741569 original size:26 final size:26
Alignment explanation
Indices: 33741531--33741583 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
33741521 CCAGTCCAAT
33741531 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
33741557 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
33741583 C
1 C
33741584 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:33742109 original size:159 final size:157
Alignment explanation
Indices: 33741753--33742568 Score: 649
Period size: 158 Copynumber: 5.2 Consensus size: 157
33741743 AACTCCTTAT
* * *
33741753 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATTG-AACGAGCGTGCGGGCGCTCA
1 GCTTACACATGGAATGAACTCCGTATGCCTAAGCCAACCCA-CGAAACGAGCGTGCGGGCGCTCA
* * * * * * * **
33741817 G-CCGATCAGAGAGGCAGAATGCGTAAGCCGAGGATCAGCTCGGTCGCCCCTGTGTGCTATCAAT
65 GTCAG-TCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGC-CCGTCCCCCCTGTGTGCTGTGGAT
* * **
33741881 CATGCTGCCACAACCCTCAATCCGGCCCGA
128 CCTGCTGCCACAACCCTCAGTCCGGTTCGA
* * * * * *
33741911 TCTTAAAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCAGGCGCTGA
1 GCTTACACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * *
33741975 GTCAGCCGGAGAGGCATAATGCGCAAGCCGGGGATCGGCCCAGTCCCCCTCTATGTACTGTGGAT
65 GTCAGTCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCC-GTCCCCC-CTGTGTGCTGTGGAT
* * * *
33742040 CCCGCTGCCACAACCCTCGGTCCGGTTGGG
128 CCTGCTGCCACAACCCTCAGTCCGGTTCGA
* * * *
33742070 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACAAAG-GTACGGGCGCTCA
1 GCTTACACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAC-GAGCGTGCGGGCGCTCA
* ** * * * * * * *
33742134 GCCAACCGAAGAGGCAGAATGCTTAAGTCGAGGATCGACCCGATCCCCCCTGCGTGCTATGGATC
65 GTCAGTCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCG-TCCCCCCTGTGTGCTGTGGATC
* *
33742199 CTGCTGCCATAACCCTCAGTCCGATTCGA
129 CTGCTGCCACAACCCTCAGTCCGGTTCGA
* * ** * * * ** *
33742228 TCTTACAC-TGGGAATGAACTCCGTATGCATAAGTTAATCCACGATACGAGCATGCGGGCATTGA
1 GCTTACACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * * *
33742292 GTC-GATCGAAAAGGCATAATGCGCAAGTCGGGGATCGGCCCGATCCCCCTCTGCGTGCAGCTGG
65 GTCAG-TCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCG-TCCCCC-CTGTGTGCTG-TGG
* * ** * *
33742356 -TCCCGCTGCCATAACCCTCAGTCCGACTGGG
126 ATCCTGCTGCCACAACCCTCAGTCCGGTTCGA
* * * * *
33742387 GCTTACACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCATGCGGGCGCTCAG
1 GCTTACACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * *
33742452 TCGGTCGGAAAGGCAGAATGTGTAAGACGGGGATCGGCTCGGTCCCCCCTGTGTACTGTCGATCC
66 TCAGTCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGC-CCGTCCCCCCTGTGTGCTGTGGATCC
* * * *
33742517 TGCTACCACAACCCTCGGTTCGGTCCGA
130 TGCTGCCACAACCCTCAGTCCGGTTCGA
* *
33742545 TCTTAGAC-TAGGAATGAACTCCGT
1 GCTTACACAT-GGAATGAACTCCGT
33742569 TTGCTTAGAC
Statistics
Matches: 517, Mismatches: 123, Indels: 36
0.76 0.18 0.05
Matches are distributed among these distances:
157 8 0.02
158 255 0.49
159 244 0.47
160 10 0.02
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (157 bp):
GCTTACACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
TCAGTCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCGTCCCCCCTGTGTGCTGTGGATCCT
GCTGCCACAACCCTCAGTCCGGTTCGA
Found at i:33742328 original size:317 final size:317
Alignment explanation
Indices: 33741753--33742568 Score: 838
Period size: 317 Copynumber: 2.6 Consensus size: 317
33741743 AACTCCTTAT
* *
33741753 GCTTAGACATGGAATGAAC-TCTGTATGCCTAAGCCAACCCATTG-AACGAGCGTGCGGGCGCTC
1 GCTTAGACATGGAATGAACTTC-GTATGCCTAAGCCAACCCA-TGAAACAAGCGTACGGGCGCTC
* * * * * *
33741816 AGCCGATCAGAGAGGCAGAATGCGTAAGCCGAGGATCAGCTCGGTCGCCCCTGTGTGCTATCAAT
64 AGCCAACCAGAGAGGCAGAATGCGTAAGCCGAGGATCAGCCCGATCCCCCCTGCGTGCTATCAAT
* *
33741881 CATGCTGCCACAACCCTCAATCCGGCCCGATCTTAAACTGGGAATGAACTCCGTATGCCTAAGTC
129 CATGCTGCCACAACCCTCAATCCGACCCGATCTTAAACTGGGAATGAACTCCGTATGCATAAGTC
* * * *
33741946 AACCCACAAAACGAGCGTGCAGGCGCTGAGTCAGCCGGAGAGGCATAATGCGCAAGCCGGGGATC
194 AACCCACAAAACGAGCATGCAGGCACTGAGTCAGCCGAAAAGGCATAATGCGCAAGCCGGGGATC
* * * **
33742011 GGCCC-AGTCCCCCTCTATGTACTG-TGGATCCCGCTGCCACAACCCTCGGTCCGGTTGGG
259 GGCCCGA-TCCCCCTCTACGTACAGCTGG-TCCCGCTGCCACAACCCTCAGTCCGACTGGG
*
33742070 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACAAAG-GTACGGGCGCTCA
1 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAAC-AAGCGTACGGGCGCTCA
* * **
33742134 GCCAACC-GAAGAGGCAGAATGCTTAAGTCGAGGATC-GACCCGATCCCCCCTGCGTGCTATGGA
65 GCCAACCAG-AGAGGCAGAATGCGTAAGCCGAGGATCAG-CCCGATCCCCCCTGCGTGCTATCAA
* * * ** *
33742197 TCCTGCTGCCATAACCCTCAGTCCGATTCGATCTTACACTGGGAATGAACTCCGTATGCATAAGT
128 TCATGCTGCCACAACCCTCAATCCGACCCGATCTTAAACTGGGAATGAACTCCGTATGCATAAGT
* * * * * * * *
33742262 TAATCCACGATACGAGCATGCGGGCATTGAGTC-GATCGAAAAGGCATAATGCGCAAGTCGGGGA
193 CAACCCACAAAACGAGCATGCAGGCACTGAGTCAG-CCGAAAAGGCATAATGCGCAAGCCGGGGA
* * *
33742326 TCGGCCCGATCCCCCTCTGCGTGCAGCTGGTCCCGCTGCCATAACCCTCAGTCCGACTGGG
257 TCGGCCCGATCCCCCTCTACGTACAGCTGGTCCCGCTGCCACAACCCTCAGTCCGACTGGG
* * * *** * *
33742387 GCTTACACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCATGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACAAGCGTACGGGCGCTCAG
* *** * * * * * * * * * * * * *
33742452 TCGGTCGGAAAGGCAGAATGTGTAAGACGGGGATCGGCTCGGTCCCCCCTGTGTACTGTCGATCC
66 CCAACCAGAGAGGCAGAATGCGTAAGCCGAGGATCAGCCCGATCCCCCCTGCGTGCTATCAATCA
* ** * ** * *
33742517 TGCTACCACAACCCTCGGTTCGGTCCGATCTTAGACTAGGAATGAACTCCGT
131 TGCTGCCACAACCCTCAATCCGACCCGATCTTAAACTGGGAATGAACTCCGT
33742569 TTGCTTAGAC
Statistics
Matches: 415, Mismatches: 73, Indels: 22
0.81 0.14 0.04
Matches are distributed among these distances:
316 5 0.01
317 400 0.96
318 10 0.02
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (317 bp):
GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACAAGCGTACGGGCGCTCAG
CCAACCAGAGAGGCAGAATGCGTAAGCCGAGGATCAGCCCGATCCCCCCTGCGTGCTATCAATCA
TGCTGCCACAACCCTCAATCCGACCCGATCTTAAACTGGGAATGAACTCCGTATGCATAAGTCAA
CCCACAAAACGAGCATGCAGGCACTGAGTCAGCCGAAAAGGCATAATGCGCAAGCCGGGGATCGG
CCCGATCCCCCTCTACGTACAGCTGGTCCCGCTGCCACAACCCTCAGTCCGACTGGG
Found at i:33742707 original size:184 final size:184
Alignment explanation
Indices: 33742387--33742749 Score: 469
Period size: 184 Copynumber: 2.0 Consensus size: 184
33742377 TCCGACTGGG
* * *
33742387 GCTTACACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCATGCGGGCGCTCAG
1 GCTTACACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGCGCATGCGGGCACTCAG
* * * * * *
33742452 TCGGTCGGAAAGGCAGAATGTGTAAGACGGGGATCGGCTCGGTCCCCCCTGTGTACTGTCGATCC
66 TCGGTCGGAAAGGCAAAAAGTGCAAGACGGGGATCGACCCGGTCCCCCCTATGTACTGTCGATCC
* * * *
33742517 TGCTACCACAACCCTCGGTTCGGTCCGATCTTAGACTAGGAATGAACTCCGTTT
131 TGCTACCACAACCCTCAGTCCGATCCGATCTTACACTAGGAATGAACTCCGTTT
* * * *
33742571 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGCGCGTGCGGGCACTTAG
1 GCTTACACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGCGCATGCGGGCACTCAG
* * * *
33742636 -CTGG-CTGGAAAGGTAAAAAGTGCAAGCCGGGGATCGACCCGGTCCCCCTTATGTGCTGTCGAT
66 TC-GGTC-GGAAAGGCAAAAAGTGCAAGACGGGGATCGACCCGGTCCCCCCTATGTACTGTCGAT
* * * *
33742699 CTTGCTACCGCAACCCTCAGTCCGATCCGGTCTTACACTGGGAATGAACTC
129 CCTGCTACCACAACCCTCAGTCCGATCCGATCTTACACTAGGAATGAACTC
33742750 TATATGCATA
Statistics
Matches: 152, Mismatches: 25, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
183 2 0.01
184 150 0.99
ACGTcount: A:0.23, C:0.29, G:0.26, T:0.21
Consensus pattern (184 bp):
GCTTACACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGCGCATGCGGGCACTCAG
TCGGTCGGAAAGGCAAAAAGTGCAAGACGGGGATCGACCCGGTCCCCCCTATGTACTGTCGATCC
TGCTACCACAACCCTCAGTCCGATCCGATCTTACACTAGGAATGAACTCCGTTT
Found at i:33742871 original size:158 final size:157
Alignment explanation
Indices: 33742571--33742944 Score: 344
Period size: 158 Copynumber: 2.4 Consensus size: 157
33742561 AACTCCGTTT
* * * * ** * *
33742571 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGCGCGTGCGGGCACTT-A
1 GCTTACACATAGAATGAACTCCATATGCATAAGCCAACCCACAAAACGAGCGTGCGGGC-GTTGA
* * * * * * * * * *
33742635 GCTGGCTGGAA-AGGTAAAAAGTGCAAGCCGGGGATCGACCCGGTCCCCCTTATGTGCTGTCGAT
65 GCT--ATCGAAGAGGCATAATGCGCAAGCCGAGGATCGACCCGATCCCCCTTACGTGCTGCCGAT
*** *
33742699 CTTGCTACCGCAACCCTC-AGTCCGATCCGG
128 CCCACTACCACAACCCTCGA-TCCGATCCGG
* * * * *
33742729 TCTTACAC-TGGGAATGAACTCTATATGCATAAGTCAACCCACAAAATGAGCGTGCGGGCGTTGA
1 GCTTACACAT-AGAATGAACTCCATATGCATAAGCCAACCCACAAAACGAGCGTGCGGGCGTTGA
33742793 GCTATCGAAGAGGCATAATGCGCAAGCCGAGGATCGACCCGATCCCCCTATACGTGCTGCC-AGT
65 GCTATCGAAGAGGCATAATGCGCAAGCCGAGGATCGACCCGATCCCCCT-TACGTGCTGCCGA-T
* * *
33742857 CCCACTACCACAACCCTCGATCTGGTCGGG
128 CCCACTACCACAACCCTCGATCCGATCCGG
* * * *
33742887 GCTTAGACATAGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCGGG
1 GCTTACACATAGAATGAACTCCATATGCATAAGCCAACCCACAAAACGAGCGTGCGGG
33742945 TGCTCAACCA
Statistics
Matches: 172, Mismatches: 37, Indels: 14
0.77 0.17 0.06
Matches are distributed among these distances:
156 4 0.02
157 37 0.22
158 129 0.75
159 2 0.01
ACGTcount: A:0.26, C:0.30, G:0.25, T:0.19
Consensus pattern (157 bp):
GCTTACACATAGAATGAACTCCATATGCATAAGCCAACCCACAAAACGAGCGTGCGGGCGTTGAG
CTATCGAAGAGGCATAATGCGCAAGCCGAGGATCGACCCGATCCCCCTTACGTGCTGCCGATCCC
ACTACCACAACCCTCGATCCGATCCGG
Found at i:33743198 original size:499 final size:500
Alignment explanation
Indices: 33742070--33743127 Score: 1121
Period size: 501 Copynumber: 2.1 Consensus size: 500
33742060 TCCGGTTGGG
* * * * *
33742070 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACAAAG-GTACGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAC-GAGCGTGCGGGCACTAA
** * * * * * ** * *
33742134 GCCAACC-GAAGAGG-CAGAA-TGCTTAAGTC-GAGGATCGACCCGATCCCCCCTGCGTGCTATG
65 GCTGACCAGAA-AGGTAAAAAGTGC--AAGCCAG-GGATCGACCCG-GCCCCCTTATGTGCTGTC
* * ** * *
33742195 GATCCTGCTGCCATAACCCTCAGTCCGATTCGATCTTACACTGGGAATGAACTCCGTATGCATAA
125 GATCTTGCTACCGCAACCCTCAGTCCGATCCGATCTTACACTGGGAATGAACTCCATATGCATAA
* * * * * *
33742260 GTTAATCCACGATACGAGCATGCGGGCATTGAGTCGATCGAAAAGGCATAATGCGCAAGTCGGGG
190 GTCAACCCACAAAACGAGCATGCGGGCATTGAGTCGATCGAAAAGGCATAATGCGCAAGCCGAGG
* * * ** * * *
33742325 ATCGGCCCGATCCCCCTCTGCGTGCAGCTGGTCCCGCTGCCATAACCCTCAGTCCGACTGGGGCT
255 ATCGACCCGATCCCCCTATACGTGCAGCCAGTCCCACTACCACAACCCTCAGTCCGACTGGGGCT
* ** * ** *
33742390 TACACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCATGCGGGCGCTCAGTCG
320 TACACATAGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCATGCGGGCGCTCAACCA
* * ** ** **
33742455 GTCGGAAAGGCAGAATGTGTAAGACGGGGATCGGCTCGGTCCCCCCTGTGTACTGTCGATCCTGC
385 GCCAGAAAGGCAGAATCCGTAAGACGGGGATCGGCTCGGTCCCCCCTACGTACTACCGATCCTGC
* * * * *
33742520 TACCACAACCCTCGGTTCGGTCCGATCTTAGACTAGGAATGAACTCCGTTT
450 TACCACAACCCTCAGTCCGATCCGATCTTAGACTAGGAATGAACTCCATAT
* * *
33742571 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGCGCGTGCGGGCACTTAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTAAG
* ** *
33742636 CTGGCTGGAAAGGTAAAAAGTGCAAGCCGGGGATCGACCCGGTCCCCCTTATGTGCTGTCGATCT
66 CTGACCAGAAAGGTAAAAAGTGCAAGCCAGGGATCGACCCGG-CCCCCTTATGTGCTGTCGATCT
* *
33742701 TGCTACCGCAACCCTCAGTCCGATCCGGTCTTACACTGGGAATGAACTCTATATGCATAAGTCAA
130 TGCTACCGCAACCCTCAGTCCGATCCGATCTTACACTGGGAATGAACTCCATATGCATAAGTCAA
* * * * *
33742766 CCCACAAAATGAGCGTGCGGGCGTTGAG-CTATCGAAGAGGCATAATGCGCAAGCCGAGGATCGA
195 CCCACAAAACGAGCATGCGGGCATTGAGTCGATCGAAAAGGCATAATGCGCAAGCCGAGGATCGA
* * * *
33742830 CCCGATCCCCCTATACGTGCTGCCAGTCCCACTACCACAACCCTC-GATCTG-GTCGGGGCTTAG
260 CCCGATCCCCCTATACGTGCAGCCAGTCCCACTACCACAACCCTCAG-TCCGACT-GGGGCTTAC
* *
33742893 ACATAGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCGGGTGCTCAACCAGCC
323 ACATAGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCATGCGGGCGCTCAACCAGCC
* * * * * *
33742958 AGAGAGGCAG-ATCCGTAAG-CTGGGGTTGGGTTCGGTCCCCCCTACGTGCTACCGATCCTGCTG
388 AGAAAGGCAGAATCCGTAAGAC-GGGGATCGGCTCGGTCCCCCCTACGTACTACCGATCCTGCTA
* *
33743021 CCGCAACCCTCAGTCCGATCTGATCTTAGACTAGGAATGAACTCCATAT
452 CCACAACCCTCAGTCCGATCCGATCTTAGACTAGGAATGAACTCCATAT
* * * * * **
33743070 GCTTTGAC-TGGGGATGAACTTCGTATGCGTAAGTCAATGCACGAAACGAGCGTGCGGG
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGG
33743128 TGCTCAATCG
Statistics
Matches: 457, Mismatches: 90, Indels: 22
0.80 0.16 0.04
Matches are distributed among these distances:
498 2 0.00
499 131 0.29
500 143 0.31
501 171 0.37
502 7 0.02
503 3 0.01
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (500 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTAAG
CTGACCAGAAAGGTAAAAAGTGCAAGCCAGGGATCGACCCGGCCCCCTTATGTGCTGTCGATCTT
GCTACCGCAACCCTCAGTCCGATCCGATCTTACACTGGGAATGAACTCCATATGCATAAGTCAAC
CCACAAAACGAGCATGCGGGCATTGAGTCGATCGAAAAGGCATAATGCGCAAGCCGAGGATCGAC
CCGATCCCCCTATACGTGCAGCCAGTCCCACTACCACAACCCTCAGTCCGACTGGGGCTTACACA
TAGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCATGCGGGCGCTCAACCAGCCAGA
AAGGCAGAATCCGTAAGACGGGGATCGGCTCGGTCCCCCCTACGTACTACCGATCCTGCTACCAC
AACCCTCAGTCCGATCCGATCTTAGACTAGGAATGAACTCCATAT
Found at i:33743425 original size:26 final size:26
Alignment explanation
Indices: 33743396--33743448 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33743386 CCAGTCCGAT
*
33743396 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCATATG
33743422 CTTAGACATGGAATGAACTCCATATG
1 CTTAGACATGGAATGAACTCCATATG
33743448 C
1 C
33743449 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:33745551 original size:26 final size:26
Alignment explanation
Indices: 33745510--33745562 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
33745500 CCGGTCTGAT
*
33745510 CTTAGACTGAGAATGAACTTCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
* *
33745536 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
33745562 C
1 C
33745563 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:33746406 original size:26 final size:26
Alignment explanation
Indices: 33746377--33746429 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
33746367 CCAATCCGAC
33746377 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
33746403 CTTAGACTGGGGATGAATTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
33746429 C
1 C
33746430 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:33748036 original size:159 final size:160
Alignment explanation
Indices: 33747633--33748036 Score: 444
Period size: 159 Copynumber: 2.5 Consensus size: 160
33747623 AACTCCATAT
* *
33747633 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAATGAGCATGCGGTCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
* * * * * *
33747698 CCGACCGGAGAGGTAGAATG-TGCAAGTCGAGGATTGACCTGGTCCCTCCCTGCATGCTATCCAT
66 CCGATCGGAGAGGAAGAATGCTGCAAGTCGAGGATCGACCCGGTCCCTCCCTACATGCTAGCCAT
* ** * *
33747762 CCTGCTACTGCAACCTTCAGTCCAATCCGA
131 CCTACTACCACAACCCTCAGTCCAATCAGA
* * * * * *
33747792 TCTTAAAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGTTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCA
* * *
33747856 GCCGGTCGGAGAGGAAAAATGCT-CAAGTCGAGGATCGACCCGGTCTCC-CTCTACATGCT-GCC
65 GCCGATCGGAGAGGAAGAATGCTGCAAGTCGAGGATCGACCCGGTC-CCTCCCTACATGCTAGCC
* *
33747918 AGTCCTACTACCACAACCCTC-GATCCGA-CTAGG
129 A-TCCTACTACCACAACCCTCAG-TCCAATC-AGA
* * * * *
33747951 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGTGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
*
33748016 CCGATCGGAGAGGCAGAATGC
66 CCGATCGGAGAGGAAGAATGC
33748037 GTAAGCTAGG
Statistics
Matches: 201, Mismatches: 37, Indels: 14
0.80 0.15 0.06
Matches are distributed among these distances:
158 6 0.03
159 191 0.95
160 4 0.02
ACGTcount: A:0.26, C:0.29, G:0.25, T:0.20
Consensus pattern (160 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
CCGATCGGAGAGGAAGAATGCTGCAAGTCGAGGATCGACCCGGTCCCTCCCTACATGCTAGCCAT
CCTACTACCACAACCCTCAGTCCAATCAGA
Found at i:33748154 original size:26 final size:26
Alignment explanation
Indices: 33748110--33748162 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
33748100 CTGGTTTGAT
* *
33748110 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
33748136 CTTAGACTTGGG-ATAAACTCCGTATG
1 CTTAGAC-TGGGAATAAACTCCGTATG
33748162 C
1 C
33748163 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:33748330 original size:26 final size:26
Alignment explanation
Indices: 33748294--33748346 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
33748284 CTGGTCCGAT
*
33748294 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTTTATATG
* *
33748320 CTTAGGCTGGGGATGAACTTTATATG
1 CTTAGACTGGGAATGAACTTTATATG
33748346 C
1 C
33748347 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.13, G:0.28, T:0.34
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTTATATG
Found at i:33749093 original size:196 final size:196
Alignment explanation
Indices: 33748759--33749273 Score: 742
Period size: 196 Copynumber: 2.6 Consensus size: 196
33748749 ACCGACTGAG
* * * *
33748759 GCTTAGACATGGAATGAACTTTGTATGCCTAAGCCAACCCATGAAATGAGCGTACGGGTACTCAG
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATAAAATGAGCGTGCGGGTGCTCAG
** * * * * * * *
33748824 CAAGTTGGAGAGGTAGAATGCGTAAGCTGGGGATCAGCCCGGTCCCCCCTGTGTGCCGTCGATCC
66 CCGGTCGGAGAGGCAGAATGCATAAGCCGGGGATCAGCCCGGTCCCCCCTGCGTGCTGTCAATCC
*
33748889 TGCTGCTGGTCCTACTATCGTAACCCTCGATCCGGTCTGATATTAGATTGGGAATGAACTCCGTA
131 TGCTGCTGGTCCTACTATCGTAACCCTCGATCCGGTCTGATATTAGACTGGGAATGAACTCCGTA
33748954 T
196 T
* *
33748955 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATAAAATGAGCGTGCGGGTGCTCAG
*
33749020 CCGGTCGGAGAGGCAGAATGCATAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCAATCC
66 CCGGTCGGAGAGGCAGAATGCATAAGCCGGGGATCAGCCCGGTCCCCCCTGCGTGCTGTCAATCC
* * *
33749085 TGCTGCTGGTCTTACTATCGTAACCCTCGGTCCGGTCTGATATTAGACTGGGAATGAACTCTGTA
131 TGCTGCTGGTCCTACTATCGTAACCCTCGATCCGGTCTGATATTAGACTGGGAATGAACTCCGTA
33749150 T
196 T
* * * *
33749151 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAACGAGTGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATAAAATGAGCGTGCGGGTGCTCAG
* * * * * ** *
33749216 TCGATCGGAAAGGCAGAATCCATAAGCCGAGGATCAGCGTGGTCCCCCTTGCGTGCTG
66 CCGGTCGGAGAGGCAGAATGCATAAGCCGGGGATCAGCCCGGTCCCCCCTGCGTGCTG
33749274 CTGATCTTGC
Statistics
Matches: 284, Mismatches: 35, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
196 284 1.00
ACGTcount: A:0.24, C:0.26, G:0.28, T:0.23
Consensus pattern (196 bp):
GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATAAAATGAGCGTGCGGGTGCTCAG
CCGGTCGGAGAGGCAGAATGCATAAGCCGGGGATCAGCCCGGTCCCCCCTGCGTGCTGTCAATCC
TGCTGCTGGTCCTACTATCGTAACCCTCGATCCGGTCTGATATTAGACTGGGAATGAACTCCGTA
T
Found at i:33749156 original size:26 final size:26
Alignment explanation
Indices: 33749127--33749178 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
33749117 CGGTCTGATA
*
33749127 TTAGAC-TGGGAATGAACTCTGTATGC
1 TTAGACAT-GGAATGAACTCCGTATGC
33749153 TTAGACATGGAATGAACTCCGTATGC
1 TTAGACATGGAATGAACTCCGTATGC
33749179 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (26 bp):
TTAGACATGGAATGAACTCCGTATGC
Found at i:33750253 original size:26 final size:26
Alignment explanation
Indices: 33750212--33750262 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
33750202 CTGGTTCGAT
33750212 CTTAGACTAGGAATGAACTCCGTATC
1 CTTAGACTAGGAATGAACTCCGTATC
* * *
33750238 CTTAGACTGGGGATGAACTTCGTAT
1 CTTAGACTAGGAATGAACTCCGTAT
33750263 GCCTAAGCCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATC
Found at i:33750435 original size:26 final size:26
Alignment explanation
Indices: 33750397--33750452 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 26
33750387 CTGGTCTGAT
** * *
33750397 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACAAGGAATAAACTCCCTATG
33750423 CTTAGACAAGGAATAAACTCCCTATG
1 CTTAGACAAGGAATAAACTCCCTATG
33750449 CTTA
1 CTTA
33750453 AGCCAACCCA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.27
Consensus pattern (26 bp):
CTTAGACAAGGAATAAACTCCCTATG
Found at i:33750620 original size:26 final size:26
Alignment explanation
Indices: 33750584--33750636 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
33750574 CCGGTCCGAT
*
33750584 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
33750610 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
33750636 C
1 C
33750637 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:33750657 original size:187 final size:183
Alignment explanation
Indices: 33750159--33750845 Score: 680
Period size: 185 Copynumber: 3.7 Consensus size: 183
33750149 GATTGACCCA
* * * *
33750159 GTCCCCCCTACGTGCTGCTGATCCTGCTACCACAACCCTTGGTCTGGTTCGATCTTAGACTAGGA
1 GTCCCCCCTACGTGCTGCTGATCCTGCTACCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGA
* * * * *
33750224 ATGAACTCCGTATCCTTAGACTGGGGATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCA
66 ATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCA
* * * ** *
33750289 TGCGGGCGCTCAACTAATCGGAGAGGTAGAATGCGCAAGCCGGGGATCAACCCG
131 TGCGGGCGCTCAGCTAGTCGGAGAGGTAGAATGCGCAAGTCAAGGATC-ACTCG
* * * * * *
33750343 GTCCCCGCCTGCGTGCTGCTGATCCTGCTGCCACAACCTTTGGTCTGGTCTGATCTTAGACTGGG
1 GTCCCC-CCTACGTGCTGCTGATCCTGCTACCACAACCCTCGGTCCGGTCCGATCTTAGACTGGG
* ** * * * *
33750408 AATGAACTCCGTATGCTTAGACAAGGAATAAACTCCCTATGCTTAAGCCAACCCATGAAATGAGC
65 AATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGC
* * * * * * * *
33750473 GTGCGGGCACTCGGCTGGTCGGAGAGGCAGAATGGGCAAGTCAAGGATCGGCTTG
130 ATGCGGGCGCTCAGCTAGTCGGAGAGGTAGAATGCGCAAGTCAAGGATC-ACTCG
*
33750528 GTTCCCCCCTACGTGCTG-TCGATCCTGCTACC-CGTATACCCTCGGTCCGGTCCGATCTTAGAT
1 G-TCCCCCCTACGTGCTGCT-GATCCTGCTACCAC--A-ACCCTCGGTCCGGTCCGATCTTAGAC
* *
33750591 TGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGCCAACTCACGAAAT
61 TGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAT
* * * * * *
33750656 GAGCATGCGGGTGCTCAGCCAGTCGAAGAGGTAGACTGTGCAAGTCAAGGATCAATCCG
126 GAGCATGCGGGCGCTCAGCTAGTCGGAGAGGTAGAATGCGCAAGTCAAGGATCACT-CG
* * * *
33750715 GTCCCCCCTGCATGCTG-TCGATCTTGCTGCTGGTCTTACTGCCACAACCCTCGATTCGGTCCGA
1 GTCCCCCCTACGTGCTGCT-GA---T-C--CT-G-C-TA---CCACAACCCTCGGTCCGGTCCGA
* *
33750779 TCTTAGATTGGGAATGAACTCCATATGCTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAAC
53 TCTTAGACTGGGAATGAACTCCATATGCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAAC
33750843 CCA
117 CCA
33750846 AGGAACGAGT
Statistics
Matches: 415, Mismatches: 67, Indels: 30
0.81 0.13 0.06
Matches are distributed among these distances:
184 8 0.02
185 169 0.41
186 25 0.06
187 122 0.29
189 1 0.00
190 1 0.00
192 2 0.00
193 1 0.00
194 1 0.00
195 2 0.00
196 78 0.19
197 2 0.00
198 2 0.00
199 1 0.00
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.23
Consensus pattern (183 bp):
GTCCCCCCTACGTGCTGCTGATCCTGCTACCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGA
ATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCA
TGCGGGCGCTCAGCTAGTCGGAGAGGTAGAATGCGCAAGTCAAGGATCACTCG
Found at i:33752152 original size:26 final size:26
Alignment explanation
Indices: 33752114--33752166 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
33752104 GGCTCAAAAT
33752114 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
33752140 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
33752166 C
1 C
33752167 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:33752643 original size:26 final size:26
Alignment explanation
Indices: 33752614--33752665 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
33752604 CCGATCTGAT
* *
33752614 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
*
33752640 CTTAAACTGGGGATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
33752666 TCTAAGCCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:33752783 original size:184 final size:184
Alignment explanation
Indices: 33752468--33752817 Score: 461
Period size: 184 Copynumber: 1.9 Consensus size: 184
33752458 TAGACATGGA
** ** * *
33752468 ATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGTGTGCGGGCGCTTAGTCGGTCGGAGAGA
1 ATGAACTCCCTATGCCTAAGCCAACCCACAAAACAAGCATGCGGGCGCTCAGTCGGACGGAGAGA
* * * *** *
33752533 TAGAATGCTCAAGCTGGGGATCGGCCCGGTCCCCCCTACGTGCTGTCGATCCTGCTATCGCAACC
66 TAGAATGCTCAAGCCGGGGATCAGCCCGGTCCCCCCTACGTGCTATCGATCCTAAGACCGCAACC
33752598 CTCGATCCGATCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAAACTGGGG
131 CTCGATCCGATCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAAACTGGGG
* * * *
33752652 ATGAACTCCGTATGTCTAAGCCAACCCACGAAACAAGCATGCGGGCGCTCAGT-TGACGGGAGAG
1 ATGAACTCCCTATGCCTAAGCCAACCCACAAAACAAGCATGCGGGCGCTCAGTCGGAC-GGAGAG
* * * *
33752716 GTAGAATG-TGCAAGCCGGGGATCAGCCCGGTCCCTCCTGCGTGCTATCGATCCTAAGACCTCAA
65 ATAGAATGCT-CAAGCCGGGGATCAGCCCGGTCCCCCCTACGTGCTATCGATCCTAAGACCGCAA
* *
33752780 CCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTC
129 CCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTC
33752818 CTTATGCATA
Statistics
Matches: 141, Mismatches: 23, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
183 3 0.02
184 138 0.98
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (184 bp):
ATGAACTCCCTATGCCTAAGCCAACCCACAAAACAAGCATGCGGGCGCTCAGTCGGACGGAGAGA
TAGAATGCTCAAGCCGGGGATCAGCCCGGTCCCCCCTACGTGCTATCGATCCTAAGACCGCAACC
CTCGATCCGATCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAAACTGGGG
Found at i:33753632 original size:26 final size:26
Alignment explanation
Indices: 33753591--33753643 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
33753581 CTGGTCTGAT
33753591 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* * *
33753617 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
33753643 C
1 C
33753644 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:33755003 original size:159 final size:160
Alignment explanation
Indices: 33754611--33755039 Score: 442
Period size: 159 Copynumber: 2.7 Consensus size: 160
33754601 CGTGCTGCCG
*
33754611 GTCCGGCTGGGGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTG
1 GTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTG
* * * * * *
33754676 CGGGTGCTCAA-TCGGCCGGAGA-GCAGAATGCGCAAGCCAGGGATC-AGCCCGATCACCCCCTG
66 CGGGCGCT-AAGCCGACCGAAGAGGCAGAATGCGCAAGCCAGGGATCGAGCCCAATCACCCCCTA
* * * *
33754738 CGTGCTGTCAATCCTACTGTCGCAACCCTCA
130 CGTGCTGTCAATCCCACCGCCACAACCCTCA
* * *** * * *
33754769 GTACGG-TCCGATTTTAGA-GTGGAAATGAACTCCGTATGCCTAAGTCAACCCATGGAACGAGCG
1 GTCCGGCT-GGGGCTTAGACATGG-AATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCG
* * * * *
33754832 TGCGGGCACTAAGCCAACCGAAGAGGCATAATGCGCAAGCTAGGGATCGA-CCCAATC-CCCTTC
64 TGCGGGCGCTAAGCCGACCGAAGAGGCAGAATGCGCAAGCCAGGGATCGAGCCCAATCACCC-CC
*
33754895 TACGTGCTGTCAGTCCCACCGCCACAACCCTCA
128 TACGTGCTGTCAATCCCACCGCCACAACCCTCA
* * * * * *
33754928 GTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCATA
1 GTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTG
* * * *
33754993 TGGACGCTAAGCCGATC-AGAGAGGCAGAATGCACAAGCCAGGGATCG
66 CGGGCGCTAAGCCGACCGA-AGAGGCAGAATGCGCAAGCCAGGGATCG
33755040 GTTCGATCCT
Statistics
Matches: 215, Mismatches: 47, Indels: 17
0.77 0.17 0.06
Matches are distributed among these distances:
157 6 0.03
158 67 0.31
159 137 0.64
160 5 0.02
ACGTcount: A:0.26, C:0.30, G:0.27, T:0.17
Consensus pattern (160 bp):
GTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTG
CGGGCGCTAAGCCGACCGAAGAGGCAGAATGCGCAAGCCAGGGATCGAGCCCAATCACCCCCTAC
GTGCTGTCAATCCCACCGCCACAACCCTCA
Found at i:33755127 original size:26 final size:26
Alignment explanation
Indices: 33755098--33755150 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
33755088 TCGATCCGAT
33755098 CTTAGACTG-GGAATGAACTCCGTATG
1 CTTAGACTGAGG-ATGAACTCCGTATG
33755124 CTTAGACTGAGGATGAACTCCGTATG
1 CTTAGACTGAGGATGAACTCCGTATG
33755150 C
1 C
33755151 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGGATGAACTCCGTATG
Found at i:33755208 original size:13 final size:13
Alignment explanation
Indices: 33755190--33755214 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
33755180 GCGCTCAACC
33755190 GACTGGAGAGGCT
1 GACTGGAGAGGCT
33755203 GACTGGAGAGGC
1 GACTGGAGAGGC
33755215 ATAATACGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.16, G:0.48, T:0.12
Consensus pattern (13 bp):
GACTGGAGAGGCT
Found at i:33755502 original size:26 final size:26
Alignment explanation
Indices: 33755466--33755523 Score: 71
Period size: 26 Copynumber: 2.2 Consensus size: 26
33755456 CCAATCCGAT
* *
33755466 CTTAGACTGGGAATGAACACTGTATG
1 CTTAGGCTGGGAATGAACACCGTATG
* *
33755492 CTTAGGCTGGGGATGAACTCCGTATG
1 CTTAGGCTGGGAATGAACACCGTATG
*
33755518 CCTAGG
1 CTTAGG
33755524 TCAACCCATG
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.24, C:0.19, G:0.31, T:0.26
Consensus pattern (26 bp):
CTTAGGCTGGGAATGAACACCGTATG
Found at i:33756198 original size:26 final size:26
Alignment explanation
Indices: 33756160--33756212 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33756150 GGCTCAAAAT
33756160 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
33756186 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
33756212 C
1 C
33756213 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:33757258 original size:131 final size:131
Alignment explanation
Indices: 33757024--33757287 Score: 528
Period size: 131 Copynumber: 2.0 Consensus size: 131
33757014 CTAAAAACTC
33757024 GAAGTGGAGAAGATTTTGTGACCATTTGAAAAAAGTGTCCCTATTTCAGACACTTTAATGGCTAC
1 GAAGTGGAGAAGATTTTGTGACCATTTGAAAAAAGTGTCCCTATTTCAGACACTTTAATGGCTAC
33757089 TGGCAGCAAACCTATAAAATCTCATATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
66 TGGCAGCAAACCTATAAAATCTCATATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
33757154 G
131 G
33757155 GAAGTGGAGAAGATTTTGTGACCATTTGAAAAAAGTGTCCCTATTTCAGACACTTTAATGGCTAC
1 GAAGTGGAGAAGATTTTGTGACCATTTGAAAAAAGTGTCCCTATTTCAGACACTTTAATGGCTAC
33757220 TGGCAGCAAACCTATAAAATCTCATATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
66 TGGCAGCAAACCTATAAAATCTCATATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
33757285 G
131 G
33757286 GA
1 GA
33757288 TAGGGGGCCA
Statistics
Matches: 133, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
131 133 1.00
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.30
Consensus pattern (131 bp):
GAAGTGGAGAAGATTTTGTGACCATTTGAAAAAAGTGTCCCTATTTCAGACACTTTAATGGCTAC
TGGCAGCAAACCTATAAAATCTCATATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
G
Found at i:33758530 original size:159 final size:158
Alignment explanation
Indices: 33758160--33758530 Score: 401
Period size: 158 Copynumber: 2.3 Consensus size: 158
33758150 AACTCCGTAT
* * *
33758160 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAACGAGCGTGCGGACCCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGTGTGCGGACCCTCAG
* * * * * ** *
33758225 CCGACCGGAGAGGTAGAATGCGTAAGTCAAGGATCAGCCCGGTCCTTCCTGCATGCTGTCGATCC
66 CCGACCGAACAGGCAGAATGCGCAAGTCAAGGATCAGCCCGATCCCCCCTGCATGCTATCGATCC
* * * *
33758290 TGTTGTTACAACCCTCGGTCCGGTCTGA
131 TGCTGTGACAACCCTCGATCCGGACTGA
* * * * *
33758318 TCTTAGAC-TGAGAATGAACTCCATATGCCTAAGTCAACCCATGAAATGAGTGTGCGGGA-GCTG
1 GCTTAGACATG-GAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGTGTGC-GGACCCTC
* * *
33758381 AGCCGACCGAACAGGCATAATGCGCAAG-CTAGGGATC-GACCCGATCCCCCTCTGGATGCTATC
64 AGCCGACCGAACAGGCAGAATGCGCAAGTC-AAGGATCAG-CCCGATCCCCC-CTGCATGCTATC
** *
33758444 GATCCTGCTGTGACAACCCTCGAT-TTGACTGGG
126 GATCCTGCTGTGACAACCCTCGATCCGGACT-GA
* *
33758477 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGTGTG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGTGTG
33758531 TGGGTGCTCA
Statistics
Matches: 175, Mismatches: 31, Indels: 13
0.80 0.14 0.06
Matches are distributed among these distances:
157 4 0.02
158 88 0.50
159 81 0.46
160 2 0.01
ACGTcount: A:0.26, C:0.28, G:0.26, T:0.21
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGTGTGCGGACCCTCAG
CCGACCGAACAGGCAGAATGCGCAAGTCAAGGATCAGCCCGATCCCCCCTGCATGCTATCGATCC
TGCTGTGACAACCCTCGATCCGGACTGA
Found at i:33758575 original size:159 final size:159
Alignment explanation
Indices: 33758160--33758577 Score: 443
Period size: 159 Copynumber: 2.6 Consensus size: 159
33758150 AACTCCGTAT
* * * *
33758160 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAACGAGCGTGC-GGACCCTCA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGA-GCTCA
* * * * ** *
33758224 GCCGACCGGAGAGGTAGAATGCGTAAGTCAAGGATC-AGCCCGGTCCTTCCTGCATGCTGTCGAT
65 GCCGACCGGAGAGGCAGAATGCGCAAGTCAGGGATCGAGCCCGATCCCCCCTGCATGCTATCGAT
* * * *
33758288 CCTGTTGTTACAACCCTCGGTCCGGTCTGA
130 CCTGCTGTGACAACCCTCGATCCGGACTGA
* * * *
33758318 TCTTAGAC-TGAGAATGAACTCCATATGCCTAAGTCAACCCATGAAATGAGTGTGCGGGAGCTGA
1 GCTTAGACATG-GAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGAGCTCA
* * * *
33758382 GCCGACCGAACAGGCATAATGCGCAAG-CTAGGGATCGA-CCCGATCCCCCTCTGGATGCTATCG
65 GCCGACCGGAGAGGCAGAATGCGCAAGTC-AGGGATCGAGCCCGATCCCCC-CTGCATGCTATCG
** *
33758445 ATCCTGCTGTGACAACCCTCGAT-TTGACTGGG
128 ATCCTGCTGTGACAACCCTCGATCCGGACT-GA
* * * *
33758477 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGTGTGTGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGAGCTCAG
* ** *
33758542 TCGGTCGGAGAGGCAGAATGCGCAAGTCGGGGATCG
66 CCGACCGGAGAGGCAGAATGCGCAAGTCAGGGATCG
33758578 CTCCGGTTCC
Statistics
Matches: 211, Mismatches: 41, Indels: 15
0.79 0.15 0.06
Matches are distributed among these distances:
157 3 0.01
158 88 0.42
159 117 0.55
160 3 0.01
ACGTcount: A:0.25, C:0.27, G:0.28, T:0.21
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGAGCTCAG
CCGACCGGAGAGGCAGAATGCGCAAGTCAGGGATCGAGCCCGATCCCCCCTGCATGCTATCGATC
CTGCTGTGACAACCCTCGATCCGGACTGA
Found at i:33758684 original size:26 final size:25
Alignment explanation
Indices: 33758635--33758686 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 25
33758625 TCAATCTGAT
*
33758635 CTTAGACTAGAATGAACACTGTATG
1 CTTAGACTAGAATGAACACCGTATG
* *
33758660 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTA-GAATGAACACCGTATG
33758686 C
1 C
33758687 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 9 0.39
26 14 0.61
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (25 bp):
CTTAGACTAGAATGAACACCGTATG
Found at i:33758837 original size:512 final size:510
Alignment explanation
Indices: 33757794--33758875 Score: 1090
Period size: 512 Copynumber: 2.1 Consensus size: 510
33757784 AACTCCGTAT
* * * ** *
33757794 GCTTAGACTGGGGATGAACTTCATAGGCCTAAGTCAACCCACAAAATGAGTGTATGGGCACTCAG
1 GCTTAGACT-GGAATGAACTCCATATGCCTAAGTCAACCCATGAAATGAGTGTACGGGCACTCAG
* * * *
33757859 CCGATCGAAAAGGCATAATGCGTAAGCCGGGGATGAACCCGATCCCCCTCTGCATGCTGTCGATC
65 CCGACCGAAAAGGCATAATGCGCAAGCCAGGGATGAACCCGATCCCCCTCTGCATGCTATCGAT-
* *
33757924 CCGCTGCCAGTCCTGCTGCCACAACCCTCGGTCCAACTAGGGCTTAGACATGGAACGAACTCATT
129 CCGCT--C-G-CCTGCTG-CACAACCCTCGATCCAACTAGGGCTTAGACATGGAACGAACTCACT
* *
33757989 ATGCCTAACCCAACCCATGAAACGGGCGTGCGGGTGCTCAGTCGGTCGGAGAGGTAGAATGCGTA
189 ATGCCTAACCCAACCCATGAAACGGGCGTGCGGGTGCTCAGTCGGTCGGAGAGGCAGAATGCGCA
* * *
33758054 AGCTGCGGATCAGCCTGATCCCCCTTACGTGCTGTCGATCCTGCTGTTTTCCTACTGCCGTAACC
254 AGCTGCGGATCAGCCGGATCCCCC-TACATGCTGTCGATCC-GC----TTACTACT-CCGTAACC
* ** * * *
33758119 CTCGGTCCGGTCTGATATTAGATTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGT
312 CTCGATCCAATCTGATATTAGACTGAGAATGAACACCGTATGCTTAGACATGGAATGAACTCCGT
*
33758184 ATGCCTAAGCCAACCCATAAAACGAGCGTGCGGACCCTCAGCCGACCGGAGAGGTAGAATGCGTA
377 ATGCCTAAGCCAACCCATAAAACGAGCGTGCGGACCCTCAGCCGACCGGAGAGGCAGAATGCGTA
* ** * * *
33758249 AGTCAAGGATCAGCCCGGTCCTTCCTGCATGCTGTCGATCCTGTTGTTACAACCCTCGGTCCGGT
442 AGCCAAGGATCAGCCCGGTCCCCCCTGCATGCTGTCCATCCTGTTGTCACAACCCTCGGTCCAGT
33758314 CTGA
507 CTGA
* * *
33758318 TCTTAGACTGAGAATGAACTCCATATGCCTAAGTCAACCCATGAAATGAGTGTGCGGG-AGCTGA
1 GCTTAGACTG-GAATGAACTCCATATGCCTAAGTCAACCCATGAAATGAGTGTACGGGCA-CTCA
* * *
33758382 GCCGACCGAACAGGCATAATGCGCAAGCTAGGGATCG-ACCCGATCCCCCTCTGGATGCTATCGA
64 GCCGACCGAAAAGGCATAATGCGCAAGCCAGGGAT-GAACCCGATCCCCCTCTGCATGCTATCGA
*** * * *
33758446 T-C-CT-G-CTG-TG-ACAACCCTCGATTTGACTGGGGCTTAGACATGGAATGAACTCCCTATGC
128 TCCGCTCGCCTGCTGCACAACCCTCGATCCAACTAGGGCTTAGACATGGAACGAACTCACTATGC
* * *
33758505 CTAAGCCAACCCATGAAACGGGTGTGTGGGTGCTCAGTCGGTCGGAGAGGCAGAATGCGCAAG-T
193 CTAACCCAACCCATGAAACGGGCGTGCGGGTGCTCAGTCGGTCGGAGAGGCAGAATGCGCAAGCT
* * *
33758569 CGGGGATC-GCTCCGGTTCCCCC-ACATGCTG-CTGAT-C-C-TACTA-T-CGTAACCCTCGATT
258 -GCGGATCAG--CCGGATCCCCCTACATGCTGTC-GATCCGCTTACTACTCCGTAACCCTCGATC
* * *
33758626 CAATCTGATCTTAGACT-AGAATGAACACTGTATGCTTAGAC-TAGGGATGAACTCCGTATGCCT
319 CAATCTGATATTAGACTGAGAATGAACACCGTATGCTTAGACAT-GGAATGAACTCCGTATGCCT
* * * ** * * *
33758689 AAGTCAACCCATGAAATGAGCGTGCAGG-TGCTCAGTCGACCGGAGAGGCATAATGTGTAAGCCA
383 AAGCCAACCCATAAAACGAGCGTGC-GGACCCTCAGCCGACCGGAGAGGCAGAATGCGTAAGCCA
* * *
33758753 GGGATCAGCCCGGTCCCCCTCTGCATGCTGCCGATCCCACTGCCTGTCCTGCTGCCACAACGCTT
447 AGGATCAGCCCGGTCCCCC-CTGCATGCT---G-T-CCA-T-CCTGT--TG-T--CACAACCCTC
*
33758818 GGTCCAG-CTGGG
499 GGTCCAGTCT-GA
* *
33758830 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAA
1 GCTTAGAC-TGGAATGAACTCCATATGCCTAAGTCAACCCATGAAA
33758876 CGAGCGTGTG
Statistics
Matches: 468, Mismatches: 66, Indels: 60
0.79 0.11 0.10
Matches are distributed among these distances:
498 1 0.00
499 107 0.23
500 36 0.08
502 1 0.00
503 5 0.01
504 1 0.00
505 2 0.00
506 1 0.00
507 5 0.01
508 1 0.00
509 2 0.00
510 3 0.01
511 14 0.03
512 159 0.34
513 11 0.02
514 2 0.00
515 3 0.01
517 1 0.00
521 2 0.00
522 1 0.00
523 2 0.00
524 107 0.23
525 1 0.00
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.22
Consensus pattern (510 bp):
GCTTAGACTGGAATGAACTCCATATGCCTAAGTCAACCCATGAAATGAGTGTACGGGCACTCAGC
CGACCGAAAAGGCATAATGCGCAAGCCAGGGATGAACCCGATCCCCCTCTGCATGCTATCGATCC
GCTCGCCTGCTGCACAACCCTCGATCCAACTAGGGCTTAGACATGGAACGAACTCACTATGCCTA
ACCCAACCCATGAAACGGGCGTGCGGGTGCTCAGTCGGTCGGAGAGGCAGAATGCGCAAGCTGCG
GATCAGCCGGATCCCCCTACATGCTGTCGATCCGCTTACTACTCCGTAACCCTCGATCCAATCTG
ATATTAGACTGAGAATGAACACCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
CCATAAAACGAGCGTGCGGACCCTCAGCCGACCGGAGAGGCAGAATGCGTAAGCCAAGGATCAGC
CCGGTCCCCCCTGCATGCTGTCCATCCTGTTGTCACAACCCTCGGTCCAGTCTGA
Found at i:33759165 original size:160 final size:158
Alignment explanation
Indices: 33758792--33759259 Score: 428
Period size: 160 Copynumber: 2.9 Consensus size: 158
33758782 GCCGATCCCA
* * *
33758792 CTGCCTGTCCTGCTGCCACAACGCTT-GGTCCAGCTGGGGCTTAGACATGGAATGAACTCCGTAT
1 CTGCC-GTCCTGCTGCCACAAC-CTTCAGTCCAGTTGGGGCTTAGACATGGAATGAACTCCATAT
* ** * ** *
33758856 GCCTAAGCCAACCCATGAAACGAGCGTGTGGGCGCTCAACCGGTCGGGGAGGCAGAATGCGTAAG
64 GCCTAAGTCAACCCATGAAACGAGCGTGAAGGCGCTCAACCGATCGAAGAGGCAGAATGCGCAAG
* * *
33758921 CCGGGGATCGGCTCGGTCCCTCCTTGCGTG
129 CCAGGGATCGGCTCGATCCCTCCTTACGTG
** * * * ** ** * *
33758951 CTATCGATCCTGCTGCCGCAACCCTCAGT-CTGATCCGATCTTAGAC-TGGGAATGAATTGCATA
1 CTGCCG-TCCTGCTGCCACAACCTTCAGTCCAG-TTGGGGCTTAGACAT-GGAATGAACTCCATA
* *
33759014 TGCATAAGTCAACCCATGAAACGAGCGTGCAAGGCGCT-AAGCCGATCGAAGAGGCATAATGCGC
63 TGCCTAAGTCAACCCATGAAACGAGCGTG-AAGGCGCTCAA-CCGATCGAAGAGGCAGAATGCGC
*
33759078 AAGTCAGGGATCGGCTCGATCCC-CCTGTACGTG
126 AAGCCAGGGATCGGCTCGATCCCTCCT-TACGTG
* * *
33759111 CTGCCAGTCCCGCTGCCACAACCTTCAATCCAGTTGGGGCTTAGACATGGAATGAACTCCCTATG
1 CTGCC-GTCCTGCTGCCACAACCTTCAGTCCAGTTGGGGCTTAGACATGGAATGAACTCCATATG
* * * ** * * * *
33759176 CCTAAGTCAACCAACGAAAC-AGGCATGCGGGCGCTCAACCG-GCCAGACAGGCAGAATGTGCAA
65 CCTAAGTCAACCCATGAAACGA-GCGTGAAGGCGCTCAACCGATCGA-AGAGGCAGAATGCGCAA
*
33759239 GCCAGGGATCGACTCGATCCC
128 GCCAGGGATCGGCTCGATCCC
33759260 CCCTGCGTGC
Statistics
Matches: 242, Mismatches: 54, Indels: 26
0.75 0.17 0.08
Matches are distributed among these distances:
158 8 0.03
159 114 0.47
160 116 0.48
161 4 0.02
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.19
Consensus pattern (158 bp):
CTGCCGTCCTGCTGCCACAACCTTCAGTCCAGTTGGGGCTTAGACATGGAATGAACTCCATATGC
CTAAGTCAACCCATGAAACGAGCGTGAAGGCGCTCAACCGATCGAAGAGGCAGAATGCGCAAGCC
AGGGATCGGCTCGATCCCTCCTTACGTG
Found at i:33759448 original size:134 final size:134
Alignment explanation
Indices: 33759215--33759476 Score: 375
Period size: 134 Copynumber: 2.0 Consensus size: 134
33759205 GGCGCTCAAC
* * *
33759215 CGGCCAGACAGGCAGAATGTGCAAGCCAGGGATCGACTCGATCCCCCCTGCGTGCTGTCGATCTT
1 CGGCCAGACAGGCAGAATGTGCAAGCCAGGGATCGACCCGATCCCCCCTGCGTGCTCTCGATCCT
* *
33759280 GCTGTCGCAACCCTCGGTCTGATCTGATCTTAGACTGGGAACGAACTCCGTATGCTTAGACTGCT
66 ACTGTCGCAACCCTCGGTCTGATCTGATCTTAGACTGGGAACGAACTCCATATGCTTAGACTGCT
33759345 CAGT
131 CAGT
* * * *
33759349 CGGCCGGAGAGGCAGAATGTGCAAGCCAGGGATCGGCCCGATCCCCCCTGTGTGCTACT-GATCC
1 CGGCCAGACAGGCAGAATGTGCAAGCCAGGGATCGACCCGATCCCCCCTGCGTGCT-CTCGATCC
* * * *
33759413 TACTG-CTGCAACCCTCGGTCTGATTTGATTTTAGACTGGGAATGAACTTCATATGCTTAGACTG
65 TACTGTC-GCAACCCTCGGTCTGATCTGATCTTAGACTGGGAACGAACTCCATATGCTTAGACTG
33759477 GGGATGAACT
Statistics
Matches: 113, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
133 1 0.01
134 111 0.98
135 1 0.01
ACGTcount: A:0.21, C:0.28, G:0.27, T:0.24
Consensus pattern (134 bp):
CGGCCAGACAGGCAGAATGTGCAAGCCAGGGATCGACCCGATCCCCCCTGCGTGCTCTCGATCCT
ACTGTCGCAACCCTCGGTCTGATCTGATCTTAGACTGGGAACGAACTCCATATGCTTAGACTGCT
CAGT
Found at i:33759493 original size:26 final size:26
Alignment explanation
Indices: 33759443--33759494 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
33759433 TGATTTGATT
*
33759443 TTAGACTGGGAATGAACTTCATATGC
1 TTAGACTGGGAATGAACTCCATATGC
* *
33759469 TTAGACTGGGGATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCATATGC
33759495 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGC
Found at i:33759851 original size:26 final size:26
Alignment explanation
Indices: 33759822--33759874 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
33759812 CTGGTCCGAT
33759822 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
33759848 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
33759874 C
1 C
33759875 CTGAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:33760173 original size:158 final size:158
Alignment explanation
Indices: 33759847--33760348 Score: 408
Period size: 158 Copynumber: 3.2 Consensus size: 158
33759837 AACTCCGTAT
* *
33759847 GCTTAGACATGGAATGAACTCCGTATGCCTGAGCCAACCCACGAAATTAGCATGCGGATGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATGCGGATGCTCAG
* * * * * * * *
33759912 CCGACTGAAAAGGTAGAATGCGCAAGCCGGGGACTGGCCTGATCCCTCCTGCGTGGTGTCGATCC
66 CCGAATGAAAAGGCAGAATGCGCAAGCCGAGGACTGACCCGATCCCCCCTACGTGCTGTCGATCC
*
33759977 TGCTACCGCAACCCTCAGTTCGATCCGA
131 TGCTACCACAACCCTCAGTTCGATCCGA
* * * ** ** * *
33760005 TCTTATACATGGAATGAACTTCGTATGCCTAAATCAACCCACGAAATGAGTGTGTGGATGCTGAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATGCGGATGCTCAG
* * * * *
33760070 CC-AATAGAAGAGGCATAATGCGCAAGCCGAGGATTGACCCGGTCCCCCTCTACGTGCTGTCGGT
66 CCGAAT-GAAAAGGCAGAATGCGCAAGCCGAGGACTGACCCGATCCCCC-CTACGTGCTGTCGAT
* * *
33760134 CCTGCTACCACAACCCTC-GGTCTGAT-TGG
129 CCTGCTACCACAACCCTCAGTTC-GATCCGA
* * * * **
33760163 GGTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAAT-AGGCGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGA-GCATGCGGATGCTCA
* * * * * * * * * * *
33760227 GCAG-GTCGGAGAGGCAGAATCCACAAGCCGGGGA-TCAGCCC-AGTCCCCCCTGCGTGCTGCCT
65 GCCGAAT-GAAAAGGCAGAATGCGCAAGCCGAGGACTGA-CCCGA-TCCCCCCTACGTGCTGTCG
* ** * *
33760289 ATCCTACTGTCGCAACCCTCAGTCCGATCCGA
127 ATCCTGCTACCACAACCCTCAGTTCGATCCGA
* *
33760321 TCTTAGAC-TGGAAATGAACTCTGTATGC
1 GCTTAGACATGG-AATGAACTCCGTATGC
33760349 TTAGACTGGG
Statistics
Matches: 267, Mismatches: 67, Indels: 20
0.75 0.19 0.06
Matches are distributed among these distances:
157 36 0.13
158 199 0.75
159 32 0.12
ACGTcount: A:0.25, C:0.29, G:0.25, T:0.21
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATGCGGATGCTCAG
CCGAATGAAAAGGCAGAATGCGCAAGCCGAGGACTGACCCGATCCCCCCTACGTGCTGTCGATCC
TGCTACCACAACCCTCAGTTCGATCCGA
Found at i:33760363 original size:26 final size:26
Alignment explanation
Indices: 33760322--33760374 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
33760312 CCGATCCGAT
33760322 CTTAGACTGGAAATGAACTCTGTATG
1 CTTAGACTGGAAATGAACTCTGTATG
**
33760348 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGAAATGAACTCTGTATG
33760374 C
1 C
33760375 CTAAGTAAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCTGTATG
Found at i:33761093 original size:26 final size:26
Alignment explanation
Indices: 33761055--33761107 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
33761045 GGCTCAAAAT
*
33761055 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
33761081 CTTAGACAT-GGAATGCACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
33761107 C
1 C
33761108 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:33761586 original size:26 final size:26
Alignment explanation
Indices: 33761557--33761609 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
33761547 CTAGTCTGAT
33761557 CTTAGACTGGAAATGAAC-TCTGTATG
1 CTTAGACTGGAAATGAACTTC-GTATG
**
33761583 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGAAATGAACTTCGTATG
33761609 C
1 C
33761610 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTTCGTATG
Found at i:33763152 original size:26 final size:26
Alignment explanation
Indices: 33763101--33763153 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
33763091 GGCTTAAAAT
*
33763101 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
33763127 CTTAGACAT-GGAATGAACTCTATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
33763153 C
1 C
33763154 CTAAGCCACA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:33763651 original size:26 final size:26
Alignment explanation
Indices: 33763600--33763652 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
33763590 CCGGTTCGAT
**
33763600 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
33763626 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
33763652 C
1 C
33763653 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:33764306 original size:26 final size:26
Alignment explanation
Indices: 33764255--33764307 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
33764245 CTGGTCTGAT
* *
33764255 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
33764281 CTTAGATTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
33764307 C
1 C
33764308 CTAAGTTAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:33764675 original size:26 final size:26
Alignment explanation
Indices: 33764646--33764698 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33764636 CCGATCTGAT
33764646 CTTAGACTG-GGAATAAACTCTGTATG
1 CTTAGACTGAGG-ATAAACTCTGTATG
*
33764672 CTTAGACTGAGGATGAACTCTGTATG
1 CTTAGACTGAGGATAAACTCTGTATG
33764698 C
1 C
33764699 GTAACTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGAGGATAAACTCTGTATG
Found at i:33766469 original size:26 final size:26
Alignment explanation
Indices: 33766433--33766485 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
33766423 CTAGTTCGAT
* *
33766433 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAAATCCATATG
33766459 CTTAGACTGGGAATGAAATCCATATG
1 CTTAGACTGGGAATGAAATCCATATG
33766485 C
1 C
33766486 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCATATG
Found at i:33766648 original size:184 final size:183
Alignment explanation
Indices: 33766275--33766701 Score: 518
Period size: 184 Copynumber: 2.3 Consensus size: 183
33766265 TCCGACTGGG
* * * * * *
33766275 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGAGTGCAGGCGCTCA
1 GCTTAGAC-TGGGAATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCA
* * * * *
33766339 GCCGATCAGAGAGGCAGAATGCGCAAGGCGAAGATCGACCTGGTCCCCCTACGTGCTGCCAATCC
65 ACCGACCAGAGAGGCAGAATACACAAGGCGAAGATCGACCTGATCCCCCTACGTGCTGCCAATCC
* * * *
33766404 TGCTGCCGCAACCCTCGGTCTAGTTCGATCTTAGACTGGGAATGAACTCCGTAT
130 TGCTACCGCAACCCTCGATCTAGATCGATCTTAGACTAGGAATGAACTCCGTAT
* *
33766458 GCTTAGACTGGGAATGAAATCCATATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAA
1 GCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAA
* * * * ** * *
33766523 CCGACCTGAGAGGCAGGATACACAAGTCGAGGATCGACCTGATCCCCCCTGTGTGCTGTCGATCC
66 CCGACCAGAGAGGCAGAATACACAAGGCGAAGATCGACCTGAT-CCCCCTACGTGCTGCCAATCC
* *
33766588 TGCTACTGCAACCCTCGAT-TCGATCTGATCTTAGACTAGGAATGAACAT-CGTAT
130 TGCTACCGCAACCCTCGATCTAGATC-GATCTTAGACTAGGAATGAAC-TCCGTAT
* ** *
33766642 GCTTAGACTGGGGATGAACTCTGTATGCCTAAGTAAACCCATGAAACGAGCGTGCGGGCG
1 GCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCG
33766702 GTGAGCCGAC
Statistics
Matches: 207, Mismatches: 33, Indels: 7
0.84 0.13 0.03
Matches are distributed among these distances:
182 1 0.00
183 93 0.45
184 112 0.54
185 1 0.00
ACGTcount: A:0.26, C:0.27, G:0.26, T:0.20
Consensus pattern (183 bp):
GCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAA
CCGACCAGAGAGGCAGAATACACAAGGCGAAGATCGACCTGATCCCCCTACGTGCTGCCAATCCT
GCTACCGCAACCCTCGATCTAGATCGATCTTAGACTAGGAATGAACTCCGTAT
Found at i:33766658 original size:26 final size:26
Alignment explanation
Indices: 33766617--33766669 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
33766607 TCGATCTGAT
33766617 CTTAGACTAGGAATGAACATC-GTATG
1 CTTAGACTAGGAATGAAC-TCTGTATG
* *
33766643 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCTGTATG
33766669 C
1 C
33766670 CTAAGTAAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 2 0.08
26 22 0.92
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCTGTATG
Found at i:33767156 original size:159 final size:158
Alignment explanation
Indices: 33766642--33767158 Score: 464
Period size: 159 Copynumber: 3.3 Consensus size: 158
33766632 AACATCGTAT
* * ** * *
33766642 GCTTAGACTGGGGATGAACTCTGTATGCCTAAGTAAACCCATGAAACGAGCGTGCGGGCGGTGAG
1 GCTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTGAG
* * * * * * *
33766707 CCGACTGAATAGGCATAATGCACAAGCCAGGGATCGGCCCGATCCCCCTCTACGTGCTGTTGGTC
65 CCGGCCGAAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTACGTGCTGTAGGTC
* * * *
33766772 CTGCTGCCACAACCCTCGGTCCGGGT-GG
130 CCGCTGCCACAACCCTCGTTCCAGCTAGG
* * ** * * * *
33766800 CACTTAGATATGGAATGAACTCCGTATGCCTAAGCCAACCCAAAAAATGAGCATGCAGGTGCTCA
1 -GCTTAGA-CTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTGA
** * * * * * * * * *
33766865 GTTGGTCGGAGAGGCAGAATGCGCAAGCTGGGGACCAGCCCAGTCCCCC-CTACGTGCTGTCGAT
64 GCCGGCCGAAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTACGTGCTGTAGGT
* * * * * *
33766929 CCCGCTGCCGCAACCCTTTGTTCGATCCA-A
129 CCCGCTGCCACAACCC-TCGTTCCAGCTAGG
* * * * *
33766959 TCTTAGACTGAGAATGAACTCTGTATGCATAAGTCAACCCATGAAACGAGCGTGTGGGTGCTGAG
1 GCTTAGACTG-GAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTGAG
* * * *
33767024 CCGGCCGAAGAGGTATAATACGCAAGCCGGGGATCGGCCCGGTCCCCCTCTATGGGCTGTAGGTC
65 CCGGCCGAAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTACGTGCTGTAGGTC
* * *
33767089 CCACTACCACAACCCTCATTCCAGCTAGG
130 CCGCTGCCACAACCCTCGTTCCAGCTAGG
*
33767118 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
1 GCTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCA
33767159 CAAAACGGGC
Statistics
Matches: 269, Mismatches: 82, Indels: 14
0.74 0.22 0.04
Matches are distributed among these distances:
157 2 0.01
158 121 0.45
159 143 0.53
160 3 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (158 bp):
GCTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTGAGC
CGGCCGAAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTACGTGCTGTAGGTCC
CGCTGCCACAACCCTCGTTCCAGCTAGG
Found at i:33767195 original size:159 final size:158
Alignment explanation
Indices: 33766729--33767204 Score: 449
Period size: 158 Copynumber: 3.0 Consensus size: 158
33766719 GCATAATGCA
* * * * *
33766729 CAAGCCAGGGATCGGCCCGATCCCCCTCTACGTGCTGTTGGTCCTGCTGCCACAACCCTCGGTCC
1 CAAGCCGGGGATCGGCCCGGTCCCCCTCTACGTGCTGTAGGTCCCGCTGCCACAACCCTCGTTCC
* * * *
33766794 GGGT-GGCACTTAGATATGGAATGAACTCCGTATGCCTAAGCCAACCCAAAAAATGAGCATGCAG
66 AGCTAGG-ACTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAAAAAACGAGCATGCAG
* * * *
33766858 GTGCTCAGTTGGTCGGAGAGGCAGAATGCG
130 GTGCTCAGCTGG-CCGAGAGGTAGAATACG
* * * * * * * *
33766888 CAAGCTGGGGACCAGCCCAGTCCCCC-CTACGTGCTGTCGATCCCGCTGCCGCAACCCTTTGTTC
1 CAAGCCGGGGATCGGCCCGGTCCCCCTCTACGTGCTGTAGGTCCCGCTGCCACAACCC-TCGTTC
* * * * * * ** * *
33766952 GATCCA--ATCTTAGAC-TGAGAATGAACTCTGTATGCATAAGTCAACCCATGAAACGAGCGTGT
65 CAGCTAGGA-CTTAGACATG-GAATGAACTCCGTATGCCTAAGCCAACCCAAAAAACGAGCATGC
* * * *
33767014 GGGTGCTGAGCCGGCCGAAGAGGTATAATACG
128 AGGTGCTCAGCTGGCCG-AGAGGTAGAATACG
* * * * *
33767046 CAAGCCGGGGATCGGCCCGGTCCCCCTCTATGGGCTGTAGGTCCCACTACCACAACCCTCATTCC
1 CAAGCCGGGGATCGGCCCGGTCCCCCTCTACGTGCTGTAGGTCCCGCTGCCACAACCCTCGTTCC
* * * *
33767111 AGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCATGCAGG
66 AGCTAGGACTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAAAAAACGAGCATGCAGG
*
33767176 CGCTCAGCTGGCCAGAGAGGTAGAATACG
131 TGCTCAGCTGGCC-GAGAGGTAGAATACG
33767205 TAAGTCAAGG
Statistics
Matches: 242, Mismatches: 65, Indels: 20
0.74 0.20 0.06
Matches are distributed among these distances:
157 5 0.02
158 119 0.49
159 115 0.48
160 3 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (158 bp):
CAAGCCGGGGATCGGCCCGGTCCCCCTCTACGTGCTGTAGGTCCCGCTGCCACAACCCTCGTTCC
AGCTAGGACTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAAAAAACGAGCATGCAGG
TGCTCAGCTGGCCGAGAGGTAGAATACG
Found at i:33767312 original size:26 final size:26
Alignment explanation
Indices: 33767276--33767328 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
33767266 CTGTCCCGAT
33767276 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
33767302 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
33767328 C
1 C
33767329 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:33768036 original size:26 final size:26
Alignment explanation
Indices: 33767999--33768050 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
33767989 GCTCAAAATG
33767999 TTAGACTGGGAAAGAACTCCGTATGC
1 TTAGACTGGGAAAGAACTCCGTATGC
* *
33768025 TTAGAC-GTGGAATGAACTTCGTATGC
1 TTAGACTG-GGAAAGAACTCCGTATGC
33768051 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.29, C:0.17, G:0.27, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAAAGAACTCCGTATGC
Found at i:33769404 original size:26 final size:26
Alignment explanation
Indices: 33769365--33769415 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
33769355 AGTTTGATCA
33769365 TAGACTGGGAATGAACTCGGTATGCT
1 TAGACTGGGAATGAACTCGGTATGCT
* *
33769391 TAGACTGGGGATGAACTCTGTATGC
1 TAGACTGGGAATGAACTCGGTATGC
33769416 CTAAGTCAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.16, G:0.31, T:0.27
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCGGTATGCT
Found at i:33771185 original size:26 final size:26
Alignment explanation
Indices: 33771134--33771186 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
33771124 CCGGTCTGAT
*
33771134 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
33771160 CTTAGACAT-GGAATGAACTTCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
33771186 C
1 C
33771187 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:33771463 original size:159 final size:159
Alignment explanation
Indices: 33771169--33771972 Score: 543
Period size: 159 Copynumber: 5.1 Consensus size: 159
33771159 GCTTAGACAT
* * * * * * *
33771169 GGAATGAACTTCGTATGCCTAAGCCAACCCTATGGAACGAGCGTGCGGGCGCTCAGCCCGATCGG
1 GGAATGAACTCCGTATGCCTAAGCCAACCC-ACGAAACGAGCGTGCGGGCACTCAGCCAGACCGA
* * * * * *
33771234 AGAGGCAGAATGCGTAAGCCGAGGATCAGCTCGGTCGCCC-CTGTGTGCTGTCAATCCTGCTGCC
65 AGAGGCAGAATGCGCAAGCCG-GGATCGGCCCGGTCCCCCTCTGTGTACTGTCGATCCTGCTGCC
*
33771298 ACAACCCTCGATCCGG-TCTGATCTTAAACTG
129 ATAACCCTCGATCCGGTTC-GATCTTAAACTG
* * * * * *
33771329 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTGAGTCAG-CCGGA
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCAGACCGAA
* * * * *
33771393 GAGGCATAATGCGCAAGCCAGGGATCGGCCCAGTCCCCCTCTATGTACTGTCGATCCCGCTACCA
66 GAGGCAGAATGCGCAAGCC-GGGATCGGCCCGGTCCCCCTCTGTGTACTGTCGATCCTGCTGCCA
* * ** *
33771458 TAACCCTCGGTCCGGTTGGGGCTTAGACAT-
130 TAACCCTCGATCCGGTTCGATCTTAAAC-TG
* * * *
33771488 GGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACAAGGGTACGGGCACTCAGCCAG-CCGAA
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCAGACCGAA
** ** * *
33771552 GAGGCAGAATGCTTAAGTCAAGGATCGACCCGATCCCCCTGC-GTGCTA-TG--GATCCTGCTGC
66 GAGGCAGAATGCGCAAG-CCGGGATCGGCCCGGTCCCCCT-CTGTG-TACTGTCGATCCTGCTGC
* *
33771613 CATAACCCTC-AGTCCGATTCGAT-TTACACTG
128 CATAACCCTCGA-TCCGGTTCGATCTTAAACTG
* ** * * * * * * *
33771644 GGAATGAACTCCGTATGCAT-AGTTAATCCACGATACGAGCATGCGGGCATTGAGTC-GATCGAA
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCAGACCGAA
* * * * *
33771707 GAGGCATAATGCGCAAGTCCGGGATCGGCCCGGTCCCCCTCTGCGTGC-GGCTGGTCCTGCTGGC
66 GAGGCAGAATGCGCAAG-CCGGGATCGGCCCGGTCCCCCTCTGTGTACTGTC-GATCCTGCT-GC
* ** * ** *
33771771 CATAA-CCTC-AGTTCGACTGGGGCTTACACAT-
128 CATAACCCTCGA-TCCGGTTCGATCTTAAAC-TG
* * * * * * ** *
33771802 GGAATGAACTCCCTATGCCTAAGCCAA-CCATGAAATGGGGCGTGCGGGCGCTCAGTC-GGTCGG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA-CGAGCGTGCGGGCACTCAGCCAGACCGA
* ** * * * *
33771865 AGAGGTAGAATATGTAAGACGGGGATCGGCTCGGT-CCCC-CTGTGTGCTGTCGATCCTGCTGCC
65 AGAGGCAGAATGCGCAAG-CCGGGATCGGCCCGGTCCCCCTCTGTGTACTGTCGATCCTGCTGCC
* * * * * *
33771928 ACAACCCTCGGTTCGGTCCGATCTTAGACTA
129 ATAACCCTCGATCCGGTTCGATCTTAAACTG
33771959 GGAATGAACTCCGT
1 GGAATGAACTCCGT
33771973 TTGCTTAGAC
Statistics
Matches: 503, Mismatches: 117, Indels: 51
0.75 0.17 0.08
Matches are distributed among these distances:
154 4 0.01
155 65 0.13
156 30 0.06
157 89 0.18
158 78 0.16
159 203 0.40
160 34 0.07
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (159 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCAGACCGAA
GAGGCAGAATGCGCAAGCCGGGATCGGCCCGGTCCCCCTCTGTGTACTGTCGATCCTGCTGCCAT
AACCCTCGATCCGGTTCGATCTTAAACTG
Found at i:33771794 original size:314 final size:319
Alignment explanation
Indices: 33771159--33771972 Score: 787
Period size: 314 Copynumber: 2.6 Consensus size: 319
33771149 AACTCCTTAT
* * * * *
33771159 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCTATGGAACGAGCGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCTACGAAACAAGCGTACGGGCACTCA
* * * * * * * *
33771224 GCCCGATCGGAGAGGCAGAATGCGTAAGCCGAGGATCAGCTCGGTCGCCCCTGTGTGCTGTCAAT
66 GCCAGACCGAAGAGGCAGAATGCGTAAGCCAAGGATCAGCCCGATCGCCCCTGCGTGCTATCAAT
*
33771289 CCTGCTGCCACAACCCTCGATCCGGTCTGATCTTAAACTGGGAATGAACTCCGTATGCCTAAGTC
131 CCTGCTGCCACAACCCTCGATCCGGTCTGATCTTAAACTGGGAATGAACTCCGTATGCATAAGTC
* * *
33771354 AACCCACGAAACGAGCGTGCAGGCGCTGAGTCAGCCGGAGAGGCATAATGCGCAAGCCAGGGATC
196 AACCCACGAAACGAGCATGCAGGCACTGAGTCAGCCGAAGAGGCATAATGCGCAAGCCAGGGATC
* * * **
33771419 GGCCCAGTCCCCCTCTATGTACTGTCGATCCCGCTACCATAACCCTCGGTCCGGTTGGG
261 GGCCCAGTCCCCCTCTACGTACGGTCGATCCCGCTACCATAACCCTCAGTCCGACTGGG
*
33771478 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCC-ACGAAACAAGGGTACGGGCACTCA
1 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCTACGAAACAAGCGTACGGGCACTCA
* * **
33771542 GCCAG-CCGAAGAGGCAGAATGCTTAAGTCAAGGATC-GACCCGATC-CCCCTGCGTGCTATGGA
66 GCCAGACCGAAGAGGCAGAATGCGTAAGCCAAGGATCAG-CCCGATCGCCCCTGCGTGCTATCAA
* * *
33771604 TCCTGCTGCCATAACCCTC-AGTCCGAT-TCGAT-TTACACTGGGAATGAACTCCGTATGCAT-A
130 TCCTGCTGCCACAACCCTCGA-TCCGGTCT-GATCTTAAACTGGGAATGAACTCCGTATGCATAA
* * * * * *
33771665 GTTAATCCACGATACGAGCATGCGGGCATTGAGTC-GATCGAAGAGGCATAATGCGCAAGTCC-G
193 GTCAACCCACGAAACGAGCATGCAGGCACTGAGTCAG-CCGAAGAGGCATAATGCGCAAG-CCAG
* * * * * * *
33771728 GGATCGGCCCGGTCCCCCTCTGCGTGCGG-CTGGTCCTGCTGGCCATAA-CCTCAGTTCGACTGG
256 GGATCGGCCCAGTCCCCCTCTACGTACGGTC-GATCCCGCT-ACCATAACCCTCAGTCCGACTGG
33771791 G
319 G
* * * * *** * *
33771792 GCTTACACATGGAATGAACTCCCTATGCCTAAGCCAA-CC-ATGAAATGGGGCGTGCGGGCGCTC
1 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCTACGAAA-CAAGCGTACGGGCACTC
* ** * * ** * ** * * * * * *
33771855 AGTC-GGTCGGAGAGGTAGAATATGTAAGACGGGGATCGGCTCGGTC-CCCCTGTGTGCTGTCGA
65 AGCCAGACCGAAGAGGCAGAATGCGTAAGCCAAGGATCAGCCCGATCGCCCCTGCGTGCTATCAA
* * * * *
33771918 TCCTGCTGCCACAACCCTCGGTTCGGTCCGATCTTAGACTAGGAATGAACTCCGT
130 TCCTGCTGCCACAACCCTCGATCCGGTCTGATCTTAAACTGGGAATGAACTCCGT
33771973 TTGCTTAGAC
Statistics
Matches: 407, Mismatches: 75, Indels: 30
0.79 0.15 0.06
Matches are distributed among these distances:
313 10 0.02
314 207 0.51
315 57 0.14
316 40 0.10
317 31 0.08
318 22 0.05
319 40 0.10
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (319 bp):
GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCTACGAAACAAGCGTACGGGCACTCA
GCCAGACCGAAGAGGCAGAATGCGTAAGCCAAGGATCAGCCCGATCGCCCCTGCGTGCTATCAAT
CCTGCTGCCACAACCCTCGATCCGGTCTGATCTTAAACTGGGAATGAACTCCGTATGCATAAGTC
AACCCACGAAACGAGCATGCAGGCACTGAGTCAGCCGAAGAGGCATAATGCGCAAGCCAGGGATC
GGCCCAGTCCCCCTCTACGTACGGTCGATCCCGCTACCATAACCCTCAGTCCGACTGGG
Found at i:33772147 original size:182 final size:183
Alignment explanation
Indices: 33771792--33772151 Score: 426
Period size: 182 Copynumber: 2.0 Consensus size: 183
33771782 TTCGACTGGG
* * * *
33771792 GCTTACACATGGAATGAACTCCCTATGCCTAAGCCAACCATGAAATGGGGCGTGCGGGCGCTCAG
1 GCTTACACATGGAATGAACTCCCTATGCCTAAGCCAACCATGAAATCGAGCGTGCAGGCCCTCAG
* * * * * * * *
33771857 TCGGTCGGAGAGGTAGAATATGTAAGACGGGGATCGGCTCGGTCCCCCTGTGTGCTGTCGATCCT
66 CCGGCCGGAAAGGTAGAATATGCAAGACAGGGATCGACCCGGTCCCCCTATGTGCTGTCGATCCT
* * * *
33771922 GCTGCCACAACCCTCGGTTCGGTCCGATCTTAGACTAGGAATGAACTCCGTTT
131 GCTCCCACAACCCTCAGTTCGATCCGATCTTACACTAGGAATGAACTCCGTTT
* *
33771975 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAA-CGAGCGTGCAGGCACCT-
1 GCTTACACATGGAATGAACTCCCTATGCCTAAGCCAA-CCATGAAATCGAGCGTGCAGGC-CCTC
*
33772038 AGCCGGCCGGAAAGGTA-AA-AGTGCAAGTCAGGGATCGACCCGGTCCCCCTATGTGCTGTCGAT
64 AGCCGGCCGGAAAGGTAGAATA-TGCAAGACAGGGATCGACCCGGTCCCCCTATGTGCTGTCGAT
* * * *
33772101 CTTGCTACCCGCAA-CCTCAG-TCTGATCCGGTCTTACACTGGGAATGAACTC
128 CCTGCT-CCCACAACCCTCAGTTC-GATCCGATCTTACACTAGGAATGAACTC
33772152 TGTATGCATA
Statistics
Matches: 149, Mismatches: 23, Indels: 11
0.81 0.13 0.06
Matches are distributed among these distances:
181 3 0.02
182 72 0.48
183 64 0.43
184 10 0.07
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.21
Consensus pattern (183 bp):
GCTTACACATGGAATGAACTCCCTATGCCTAAGCCAACCATGAAATCGAGCGTGCAGGCCCTCAG
CCGGCCGGAAAGGTAGAATATGCAAGACAGGGATCGACCCGGTCCCCCTATGTGCTGTCGATCCT
GCTCCCACAACCCTCAGTTCGATCCGATCTTACACTAGGAATGAACTCCGTTT
Found at i:33772449 original size:496 final size:496
Alignment explanation
Indices: 33771478--33772525 Score: 1161
Period size: 496 Copynumber: 2.1 Consensus size: 496
33771468 TCCGGTTGGG
* * * *
33771478 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACAAGGGTACGGGCACTCAG
1 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAG
* * *
33771543 CCAGCCGAAGAGGCAGAATGCTTAAGTCAAGGATCGACCCGATCCCCCTGCGTGCTATGGATCCT
66 CCAGCCGAAGAGGCAAAATGC-TAAGTCAAGGATCGACCCGATCCCCCTACGTGCTATCGATCCT
* * * * *
33771608 GCTGCCATAACCCTCAGTCCGATTCGATTTACACTGGGAATGAACTCCGTATGCATAGTTAATCC
130 GCTCCCACAACCCTCAGTCCGATCCGATTTACACTGGGAATGAACTCCGTATGCATAGTCAACCC
* * * *
33771673 ACGATACGAGCATGCGGGCATTGAGTCGATCGAAGAGGCATAATGCGCAAGTCCGGGATCGGCCC
195 ACAAAACGAGCATGCGAGCATTGAGTCGATCGAAGAGGCATAATGCGCAAGTCCGGGATCGACCC
* * * ** ** *
33771738 GGTCCCCCTCTGCGTGCGGCTGGTCCTGCTGGCCATAACCTCAGTTCGACTGGGGCTTACACATG
260 GATCCCCCTATACGTGCGGCCAGTCCCACTGGCCATAACCTCAGTTCGACTGGGGCTTACACATA
* ** ** * * *
33771803 GAATGAACTCCCTATGCCTAAGCCAACCATGAAATGGGGCGTGCGGGCGCTCAGTCGGTCGGAGA
325 GAATGAACTCCCTATGCCTAAGCCAACCATCAAAACGGGCGTGCGGGCGCTCAACCAGCCAGAGA
* * ** **
33771868 GGTAGAATATGTAAGACGGGGATCGGCTCGGTCCCCCTGTGTGCTGTCGATCCTGCTGCCACAAC
390 GGCAGAATACGTAAGACGGGGATCGGCTCGGTCCCCCTACGTGCTACCGATCCTGCTGCCACAAC
* * * * *
33771933 CCTCGGTTCGGTCCGATCTTAGACTAGGAATGAACTCCGTTT
455 CCTCAGTCCGATCCGATCTTAGACTAGGAATGAACTCCATAT
* *
33771975 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCAC-CTA
1 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTC-A
* * * * * *
33772039 GCCGGCCGGAA-AGGTAAAAGTGC-AAGTCAGGGATCGACCCGGTCCCCCTATGTGCTGTCGATC
65 GCCAGCC-GAAGAGGCAAAA-TGCTAAGTCAAGGATCGACCCGATCCCCCTACGTGCTATCGATC
* * * * *
33772102 TTGCTACCCGCAA-CCTCAGTCTGATCCGGTCTTACACTGGGAATGAACTCTGTATGCATAAGTC
128 CTGCT-CCCACAACCCTCAGTCCGATCCGAT-TTACACTGGGAATGAACTCCGTATGCAT-AGTC
* * * *
33772166 AACCCACAAAATGAGCGTGCGAGCGTTGAG-CTATCGAAGAGGCATAATGCGCAAG-CCGAGGAT
190 AACCCACAAAACGAGCATGCGAGCATTGAGTCGATCGAAGAGGCATAATGCGCAAGTCCG-GGAT
* * * *
33772229 CGACCCGATCCCCCTATACGTGCTGCCAGTCCCACT-GCACA-ACCCTC-GATCTG-GTCGGGGC
254 CGACCCGATCCCCCTATACGTGCGGCCAGTCCCACTGGC-CATAACCTCAGTTC-GACT-GGGGC
* *
33772290 TTAGACATAGAATGAACTCCCTATGCCTAAGCCAACCCA-CAAAACGGGCGTGCGGGTGCTCAAC
316 TTACACATAGAATGAACTCCCTATGCCTAAGCCAA-CCATCAAAACGGGCGTGCGGGCGCTCAAC
* * * *
33772354 CAGCCAGAGAGGCAG-ATCCGTAAG-CTGGGGTTGGGTTCGGTCCCCCCTACGTGCTACCGATCC
380 CAGCCAGAGAGGCAGAATACGTAAGAC-GGGGATCGGCTCGGT-CCCCCTACGTGCTACCGATCC
* *
33772417 TGCTGCCGCAACCCTCAGTCCGATCTGATCTTAGACTAGGAATGAACTCCATAT
443 TGCTGCCACAACCCTCAGTCCGATCCGATCTTAGACTAGGAATGAACTCCATAT
* * * * **
33772471 GCTTTGAC-TGGGGATGAACTTCGTATGCGTAAGTCAATGCACGAAACGAGCGTGC
1 GCTTAGACAT-GGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGC
33772526 GGGTGCTCAA
Statistics
Matches: 457, Mismatches: 80, Indels: 29
0.81 0.14 0.05
Matches are distributed among these distances:
494 1 0.00
495 24 0.05
496 241 0.53
497 159 0.35
498 32 0.07
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.21
Consensus pattern (496 bp):
GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAG
CCAGCCGAAGAGGCAAAATGCTAAGTCAAGGATCGACCCGATCCCCCTACGTGCTATCGATCCTG
CTCCCACAACCCTCAGTCCGATCCGATTTACACTGGGAATGAACTCCGTATGCATAGTCAACCCA
CAAAACGAGCATGCGAGCATTGAGTCGATCGAAGAGGCATAATGCGCAAGTCCGGGATCGACCCG
ATCCCCCTATACGTGCGGCCAGTCCCACTGGCCATAACCTCAGTTCGACTGGGGCTTACACATAG
AATGAACTCCCTATGCCTAAGCCAACCATCAAAACGGGCGTGCGGGCGCTCAACCAGCCAGAGAG
GCAGAATACGTAAGACGGGGATCGGCTCGGTCCCCCTACGTGCTACCGATCCTGCTGCCACAACC
CTCAGTCCGATCCGATCTTAGACTAGGAATGAACTCCATAT
Found at i:33772851 original size:26 final size:26
Alignment explanation
Indices: 33772800--33772852 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
33772790 CCAGTCCGAT
*
33772800 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
33772826 CTTAGACAT-GGAATGAACTCTATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
33772852 C
1 C
33772853 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:33773251 original size:158 final size:155
Alignment explanation
Indices: 33772963--33773495 Score: 543
Period size: 158 Copynumber: 3.4 Consensus size: 155
33772953 TCCTGCTTTT
* *
33772963 ATCCTGCTGCCACAACCCTCGGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
1 ATCCTGCTGCCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAG
* * * * * * *
33773028 CCAACCCACGAAACGAGCGTGCGGGCGCTCAGCAGACTGGAGAGGTAGAATGTGTAGGCCGGGGA
66 CCAACCCACGAAA-GAGCGTGCGGGCACTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGA
* *
33773093 TCAACTCGATCCCACCTCCGTACTATCG
130 TCGACTCGGTCCC-CCT-CGTACTATCG
* * * *
33773121 ATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTATATGCCCAAG
1 ATCCTGCTGCCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAG
* * * * * * * *
33773186 TCAACCCATGAAATGAGTGTGCGAGCATTGAGCCGACCGAAGAGGCATAATGCGCAAGCCGGGGA
66 CCAACCCACGAAA-GAGCGTGCGGGCACTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGA
33773251 TCGACTCGGTCCCCCTC-TAC-ATGCTG
130 TCGACTCGGTCCCCCTCGTACTAT-C-G
* * * * ** *
33773277 CCAGTCCCGCTGCCACAACCTTCAGTCCGG-CTAGGGCTTAGACAT-GGAATGAACTCCCTATGC
1 --A-TCCTGCTGCCACAACCCTCGGTCCGGTC-CGATCTTAGAC-TGGGAATGAACTCCATATGC
* * *
33773340 CTAAGCCAACCCACGAAACAGGCGTACGGGCACTCAGCCGATCGGAGAGGCAGAATGCGCAAGCC
61 CTAAGCCAACCCACGAAAGA-GCGTGCGGGCACTCAGCCGACCGGAGAGGCAGAATGCGCAAGCC
* * * *
33773405 GGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCG
125 GGGGATCGACTCGGT-CCCCCT-CGTACTATCG
** * *
33773438 ATCCTGCTGCCGTAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCATAT
1 ATCCTGCTGCCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATAT
33773496 ACTTAGACTG
Statistics
Matches: 301, Mismatches: 60, Indels: 28
0.77 0.15 0.07
Matches are distributed among these distances:
154 2 0.01
155 4 0.01
156 2 0.01
157 4 0.01
158 164 0.54
159 112 0.37
160 7 0.02
161 2 0.01
162 3 0.01
163 1 0.00
ACGTcount: A:0.23, C:0.32, G:0.26, T:0.19
Consensus pattern (155 bp):
ATCCTGCTGCCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAG
CCAACCCACGAAAGAGCGTGCGGGCACTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGAT
CGACTCGGTCCCCCTCGTACTATCG
Found at i:33774972 original size:26 final size:26
Alignment explanation
Indices: 33774931--33774983 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
33774921 CCGGTCTGAT
*
33774931 CTTAGACTGAGAATGAACTTCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
* *
33774957 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
33774983 C
1 C
33774984 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:33775815 original size:26 final size:26
Alignment explanation
Indices: 33775786--33775838 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
33775776 CCAATCCGAC
33775786 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
33775812 CTTAGACTGGGGATGAATTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
33775838 C
1 C
33775839 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:33777059 original size:26 final size:26
Alignment explanation
Indices: 33777021--33777073 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
33777011 CTGATCTGAT
33777021 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
33777047 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
33777073 C
1 C
33777074 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:33777383 original size:160 final size:159
Alignment explanation
Indices: 33777046--33777454 Score: 443
Period size: 160 Copynumber: 2.6 Consensus size: 159
33777036 AACTCCATAT
* *
33777046 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAATGAGCATGCGGTCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
* * * * *
33777111 CCGACCGGAGAGG-TAGAATGCGCAAGTCGAGGATCGACCCGGTCCCCCCTGCATGCTGTCCATC
66 CCGATCGGAGAGGCAAAAATGCGCAAGTCGAGGATCGACCCGATCCCCCCTACATGCTGTCCATC
* * ** *
33777175 CTGCTACCACAACCGTCAGTCCGGTTTGA
131 CTACTACCACAACCCTCAGTCCGACTGGA
* * * * * *
33777204 TCTTAGAC-TGGGAATGAACTCCGTATACCTAAGTCAACCCATGAAATGAGCGTGCGGGCGTTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCA
* * * ** * *
33777268 GCCGGTCGGAGAGGCAAAAATGCCTCAAGTCGGGGATCGACCCGATCTCCTTCTACGTGCTG-CT
65 GCCGATCGGAGAGGCAAAAATG-CGCAAGTCGAGGATCGACCCGATC-CCCCCTACATGCTGTCC
*
33777332 AGTCCTACT-CCACAACCCTC-GATCCGACTGGG
128 A-TCCTACTACCACAACCCTCAG-TCCGACTGGA
* * * * *
33777364 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGTGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
*
33777429 CCGATCGGAGAGGC-AGAATGCGCAAG
66 CCGATCGGAGAGGCAAAAATGCGCAAG
33777455 CTAGGGATCG
Statistics
Matches: 205, Mismatches: 39, Indels: 14
0.79 0.15 0.05
Matches are distributed among these distances:
157 1 0.00
158 71 0.35
159 11 0.05
160 105 0.51
161 17 0.08
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.19
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
CCGATCGGAGAGGCAAAAATGCGCAAGTCGAGGATCGACCCGATCCCCCCTACATGCTGTCCATC
CTACTACCACAACCCTCAGTCCGACTGGA
Found at i:33777549 original size:158 final size:155
Alignment explanation
Indices: 33777047--33777549 Score: 483
Period size: 158 Copynumber: 3.2 Consensus size: 155
33777037 ACTCCATATG
* * *
33777047 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAATGAGCATGCGGTCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAGC
* * * *
33777112 CGACCGGAGAGGTAGAATGCGCAAGTCGAGGATCGACCCGGTCCCCCCTGCATGCTGTCCATCCT
66 CGATCGGAGAGGCAGAATGCGCAAGTAG-GGATCGACCCGGTCCCCCCTGCGTGC--TCCATCCT
*
33777177 GCTACCACAACCGTC-AGTCCGGTTTGAT
128 GCTACCACAACCCTCGA-TCCGGTTTGAT
* * * *
33777205 CTTAGAC-TGGGAATGAACTCCGTATACCTAAGTCAACCCATGAAATGAGCGTGCGGGCGTTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
* * * * * ** * *
33777269 CCGGTCGGAGAGGCAAAAATGCCTCAAGTCGGGGATCGACCCGATCTCCTTCTACGTGCTGCTAG
65 CCGATCGGAGAGGC-AGAATG-CGCAAGT-AGGGATCGACCCGGTC-CCCCCTGCGTGCT-CCA-
* ** * **
33777334 TCCTACT-CCACAACCCTCGATCCGACTGGGG
124 TCCTGCTACCACAACCCTCGATCCGGTTTGAT
* * * * *
33777365 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGTGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAGC
*** *
33777430 CGATCGGAGAGGCAGAATGCGCAAGCTAGGGATCGGTTCGGTCCCCCCTGCGTGCTACCGATTCT
66 CGATCGGAGAGGCAGAATGCGCAAG-TAGGGATCGACCCGGTCCCCCCTGCGTGCT-CC-ATCCT
***
33777495 GCTACGGTAACCCTCGATCCGGTTTGAT
128 GCTACCACAACCCTCGATCCGGTTTGAT
*
33777523 CTTAGAC-TGGGAATGAACTCTGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
33777550 TTAGACTTGG
Statistics
Matches: 272, Mismatches: 60, Indels: 26
0.76 0.17 0.07
Matches are distributed among these distances:
157 18 0.07
158 122 0.45
159 12 0.04
160 103 0.38
161 17 0.06
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (155 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAGC
CGATCGGAGAGGCAGAATGCGCAAGTAGGGATCGACCCGGTCCCCCCTGCGTGCTCCATCCTGCT
ACCACAACCCTCGATCCGGTTTGAT
Found at i:33777567 original size:26 final size:26
Alignment explanation
Indices: 33777523--33777575 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
33777513 CCGGTTTGAT
* *
33777523 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
33777549 CTTAGACTTGGG-ATAAACTCCGTATG
1 CTTAGAC-TGGGAATAAACTCCGTATG
33777575 C
1 C
33777576 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:33778506 original size:195 final size:196
Alignment explanation
Indices: 33778173--33778686 Score: 744
Period size: 195 Copynumber: 2.6 Consensus size: 196
33778163 ACCGACTGAG
* * *
33778173 GCTTAGACATGGAATGAACTTTGTATGCCTAAGCCAACCCATGAAATGAGCGTACGGGTACTCAG
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATAAAATGAGCGTACGGGTGCTCAG
** * * * * *
33778238 CAAGTTGGAGAGGTAGAATGCGTAAGCTGGGGATCAGCCCGGTCCCCCCTGTGTGCCGTCAATCC
66 CCGGTTGGAGAGGCAGAATGCATAAGCCGGGGATCAGCCCGGTCCCCCCTGCGTGCTGTCAATCC
* *
33778303 TGCTGCTGGTCCTACTATCGTAACCCTCGATCCGGTCTGATATTAGATTGGGAATGAACTCTGTA
131 TGCTGCTGGTCCTACTATCGTAACCCTCGATCCGGTCTGATATTAGACTGGGAATGAACTCCGTA
33778368 T
196 T
* *
33778369 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCA-CAAATGAGCGTACGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATAAAATGAGCGTACGGGTGCTCAG
* *
33778433 CCGGTTGGAGAGGCAGAATGCACAAGCCGGGGATC-GACCCGGTCCCCCCTGCGTGCTGTCGATC
66 CCGGTTGGAGAGGCAGAATGCATAAGCCGGGGATCAG-CCCGGTCCCCCCTGCGTGCTGTCAATC
*
33778497 CTGCTGCTGGTCCTACTATCGTAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGT
130 CTGCTGCTGGTCCTACTATCGTAACCCTCGATCCGGTCTGATATTAGACTGGGAATGAACTCCGT
33778562 AT
195 AT
* * * *
33778564 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATAAAATGAGCGTACGGGTGCTCAG
* * * * * ** *
33778629 TCGATCGGAAAGGCAAAATGCATAAGCCGGGGATCAGCGTGGTCCCCCTTGCGTGCTG
66 CCGGTTGGAGAGGCAGAATGCATAAGCCGGGGATCAGCCCGGTCCCCCCTGCGTGCTG
33778687 CTGATCTTGC
Statistics
Matches: 284, Mismatches: 31, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
194 1 0.00
195 177 0.62
196 105 0.37
197 1 0.00
ACGTcount: A:0.24, C:0.26, G:0.27, T:0.22
Consensus pattern (196 bp):
GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATAAAATGAGCGTACGGGTGCTCAG
CCGGTTGGAGAGGCAGAATGCATAAGCCGGGGATCAGCCCGGTCCCCCCTGCGTGCTGTCAATCC
TGCTGCTGGTCCTACTATCGTAACCCTCGATCCGGTCTGATATTAGACTGGGAATGAACTCCGTA
T
Found at i:33778568 original size:26 final size:26
Alignment explanation
Indices: 33778539--33778591 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
33778529 CCGGTCTGAT
33778539 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
33778565 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
33778591 C
1 C
33778592 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:33779020 original size:156 final size:155
Alignment explanation
Indices: 33778564--33779021 Score: 412
Period size: 156 Copynumber: 2.9 Consensus size: 155
33778554 AACTCCGTAT
** *
33778564 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
* * * * * * *
33778629 TCGATCGGAAAGGCAAAATGCATAAGCCGGGGATC-AGCGTGGTCCCCCTTGCGTGCTGCTGATC
66 CCG-TCGGAGAGGCAAAATGCGTAAGCAGGGGATCGA-C-CGGTCCCCC-TGCGTGCTACAGATC
* * *
33778693 TTGCTATCGCAACCCTCTATCCGGTCTAA
127 CTGCTACCGCAACCCTCTATCCGGACTAA
* * * * * ** *
33778722 TCTTAGAC-TAGGAATTAACTCTGTATGCCTAAGTCAACCCACGGAACGAGCGTATGGGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCA
* * *
33778786 GCCGGTCGGAG-GGCATAATGCGTAAGAAGAGGATCGTA-CGGTCCCCCCTGCGTGCTACAGAT-
65 GCC-GTCGGAGAGGCAAAATGCGTAAGCAGGGGATCG-ACCGGT-CCCCCTGCGTGCTACAGATC
* ***
33778848 CTCGCTGCCATGACCCTC-AGTCC-GACTAGA
127 CT-GCTACCGCAACCCTCTA-TCCGGACTA-A
* * *
33778878 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGTG-TCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
* * *
33778942 CCAGTCGGAGAGGCAGAATGCGCAAGCAGGGGATCGACCCGGTCCCCCTACGTGCTATC-GATCC
66 CC-GTCGGAGAGGCAAAATGCGTAAGCAGGGGATCGA-CCGGTCCCCCTGCGTGCTA-CAGATCC
*
33779006 TACTACCGCAACCCTC
128 TGCTACCGCAACCCTC
33779022 GGTACGATCT
Statistics
Matches: 236, Mismatches: 50, Indels: 30
0.75 0.16 0.09
Matches are distributed among these distances:
155 19 0.08
156 124 0.53
157 33 0.14
158 58 0.25
159 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (155 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
CCGTCGGAGAGGCAAAATGCGTAAGCAGGGGATCGACCGGTCCCCCTGCGTGCTACAGATCCTGC
TACCGCAACCCTCTATCCGGACTAA
Found at i:33779661 original size:26 final size:26
Alignment explanation
Indices: 33779620--33779670 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
33779610 CTGGTTCGAT
33779620 CTTAGACTAGGAATGAACTCCGTATC
1 CTTAGACTAGGAATGAACTCCGTATC
* * *
33779646 CTTAGACTGGGGATGAACTTCGTAT
1 CTTAGACTAGGAATGAACTCCGTAT
33779671 GCCTAAGCCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATC
Found at i:33779843 original size:26 final size:26
Alignment explanation
Indices: 33779805--33779860 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 26
33779795 CTGGTCTGAT
** * *
33779805 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACAAGGAATAAACTCCCTATG
33779831 CTTAGACAAGGAATAAACTCCCTATG
1 CTTAGACAAGGAATAAACTCCCTATG
33779857 CTTA
1 CTTA
33779861 AGCCAACCCA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.27
Consensus pattern (26 bp):
CTTAGACAAGGAATAAACTCCCTATG
Found at i:33779865 original size:185 final size:184
Alignment explanation
Indices: 33779535--33780260 Score: 684
Period size: 185 Copynumber: 3.9 Consensus size: 184
33779525 AGCCGACCGA
*** **
33779535 AGAGGCAGAATGCGCAAGCTGGGGATTGACCCGGT-CCCCCTACGTGCTGCTGATCCTGCTACCA
1 AGAGGCAGAATGCGCAAGCCAAGGATCAACCCGGTCCCCCCTACGTGCTGCTGATCCTGCTACCA
* * * * * * * *
33779599 CAACCCTTGGTCTGGTTCGATCTTAGACTAGGAATGAACTCCGTATCCTTAGACTGGGGATGAAC
66 CAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACAGGGAATGAAC
* * *
33779664 TTCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAACTAATCGG
131 TCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGCTAGTCGG
* ** * *
33779718 AGAGGTAGAATGCGCAAGCCGGGGATCAACCCGGTCCCCGCCTGCGTGCTGCTGATCCTGCTGCC
1 AGAGGCAGAATGCGCAAGCCAAGGATCAACCCGGTCCCC-CCTACGTGCTGCTGATCCTGCTACC
* * * * * * *
33779783 ACAACCTTTGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAAGGAATAAA
65 ACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACAGGGAATGAA
* * * * * * * *
33779848 CTCCCTATGCTTAAGCCAACCCATGAAATGAGCGTGCGGGCACTCGGCTGGTCGG
130 CTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGCTAGTCGG
* * ** ** * *
33779903 AGAGGCAGAATGGGCAAGTCAAGGATCGGCTTGGTCTCCCCCTACGTGCT-ATCGATCCTGCTAT
1 AGAGGCAGAATGCGCAAGCCAAGGATCAACCCGGTC-CCCCCTACGTGCTGCT-GATCCTGCTAC
** * * *
33779967 CGTAACCCTCGGTCCGGTCCGATCTTAGATTGGGAATGAACTCCATATGCTTAGACTGGGGATGA
64 CACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACAGGGAATGA
* * * * *
33780032 ACTCCGTATGCCTAAGCCAACTCACGAAATGAGCATGCGGGTGCTCAGCCAGTCGA
129 ACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGCTAGTCGG
* * * * * * *
33780088 AGAGGTAGACTGTGCAAGTCAAGGATCAATCCGGTCCCCCCTGCATGCTG-TCGATCTTGCTGCT
1 AGAGGCAGAATGCGCAAGCCAAGGATCAACCCGGTCCCCCCTACGTGCTGCT-GA---T-C--CT
* *
33780152 GGTCTTACTGCCACAACCCTCGATCCGGTCCGATCTTAGATTGGGAATGAACTCCATATGCTTAG
59 -G-C-TA---CCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAG
* * * *
33780217 ACATGGAATGAACTCTGTATGCCTAAGCCAACCCAAGGAACGAG
118 ACAGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAG
33780261 TGTGCGGGTA
Statistics
Matches: 442, Mismatches: 84, Indels: 21
0.81 0.15 0.04
Matches are distributed among these distances:
183 31 0.07
184 19 0.04
185 294 0.67
186 3 0.01
187 1 0.00
188 1 0.00
190 2 0.00
191 1 0.00
192 1 0.00
193 2 0.00
196 87 0.20
ACGTcount: A:0.24, C:0.27, G:0.26, T:0.22
Consensus pattern (184 bp):
AGAGGCAGAATGCGCAAGCCAAGGATCAACCCGGTCCCCCCTACGTGCTGCTGATCCTGCTACCA
CAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACAGGGAATGAAC
TCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGCTAGTCGG
Found at i:33780026 original size:26 final size:26
Alignment explanation
Indices: 33779990--33780042 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
33779980 CCGGTCCGAT
*
33779990 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
33780016 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
33780042 C
1 C
33780043 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:33781837 original size:12 final size:12
Alignment explanation
Indices: 33781820--33781849 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
33781810 CCCTCTATGT
33781820 GCTGCCGGTCCC
1 GCTGCCGGTCCC
33781832 GCTGCCGGTCCC
1 GCTGCCGGTCCC
*
33781844 ACTGCC
1 GCTGCC
33781850 ACAACCCTCG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.03, C:0.50, G:0.30, T:0.17
Consensus pattern (12 bp):
GCTGCCGGTCCC
Found at i:33782059 original size:26 final size:26
Alignment explanation
Indices: 33782030--33782082 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
33782020 CCGATCTGAT
* *
33782030 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
*
33782056 CTTAAACTGGGGATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
33782082 C
1 C
33782083 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:33782199 original size:184 final size:184
Alignment explanation
Indices: 33781884--33782233 Score: 531
Period size: 184 Copynumber: 1.9 Consensus size: 184
33781874 TAGACATGGA
* ** * *
33781884 ATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGTGTACGGGCGCTTAGTCGGTCGGAGAGA
1 ATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCATACGGGCGCTCAGTCGATCGGAGAGA
* * * *
33781949 TAGAATGCTCAAGCTGGGGATCGGCCCGGTCCCCCTTACGTGCTATCGATCCTGCTACCGCAACC
66 CAGAATGCGCAAGCTGGGGATCAGCCCGGTCCCCCTTACGTGCTATCGATCCTGCGACCGCAACC
33782014 CTCGATCCGATCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAAACTGGGG
131 CTCGATCCGATCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAAACTGGGG
* * * *
33782068 ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGTCGATCGGAGAGG
1 ATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCATACGGGCGCTCAGTCGATCGGAGAGA
* *
33782133 CAGAATGCGCAAGCTGGGGATCAGCCCGGTCCCTCC-TGCGTGCTATCGATCCTGCGACCTCAAC
66 CAGAATGCGCAAGCTGGGGATCAGCCCGGTCCC-CCTTACGTGCTATCGATCCTGCGACCGCAAC
* *
33782197 CCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTC
130 CCTCGATCCGATCTGATCTTAGACTGGGAATGAACTC
33782234 CTTATGCATA
Statistics
Matches: 148, Mismatches: 17, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
184 146 0.99
185 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.21
Consensus pattern (184 bp):
ATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCATACGGGCGCTCAGTCGATCGGAGAGA
CAGAATGCGCAAGCTGGGGATCAGCCCGGTCCCCCTTACGTGCTATCGATCCTGCGACCGCAACC
CTCGATCCGATCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAAACTGGGG
Found at i:33782460 original size:147 final size:146
Alignment explanation
Indices: 33782193--33782582 Score: 329
Period size: 147 Copynumber: 2.6 Consensus size: 146
33782183 CCTGCGACCT
* * * * *
33782193 CAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCTTATGCATAAGTCAACCCATGAA
1 CAACCCTCGGTCCGGTCTGAGCATAGACTGGGAATGAACTCCCTATGCATAAGCCAACCCACGAA
* * * * * * *
33782258 ACGAGCGTGCGGGCACTGAGTCGGCCAAAGGGGCATAACACGCAGGCCGGGGATC-GACTTGATC
66 ACGAGCGTGCGAGCACTCAGTCGGCCAAAGAGGCAGAACACGCAAGCCAGGGATCGGACCTG-TC
33782322 CCCCTCTGCGTGCTGCCA
130 CCCC-CTGCGTGCTGCCA
* *
33782340 CAACCCTCGGTCCGGT-TGGGGCATAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACG
1 CAACCCTCGGTCCGGTCT-GAGCATAGAC-TGGGAATGAACTCCCTATGCATAAGCCAACCCACG
* * * * * ** *
33782403 AAACGGGCGTGCGAGCGCTCAGTCGGTCAGAGAGGTAGAATGCGCAAGCCAGGGATCGGCCCTGT
64 AAACGAGCGTGCGAGCACTCAGTCGGCCAAAGAGGCAGAACACGCAAGCCAGGGATCGGACCTGT
33782468 CCCCCCTGCGTGCTGTCGGTCCTA
129 CCCCCCTGCGTGC--T--G-CC-A
* * * * * *
33782492 CTGCCATAACCCTCGGTCCGATCCGATCTTAGACTGGGAAGGAAC-CCCGTATGCCTAAGCCAAC
1 ----C--AACCCTCGGTCCGGTCTGAGCATAGACTGGGAATGAACTCCC-TATGCATAAGCCAAC
* *
33782556 CCACAAAACGAGCGTGCGGGCACTCAG
59 CCACGAAACGAGCGTGCGAGCACTCAG
33782583 CTGACCGGAG
Statistics
Matches: 193, Mismatches: 32, Indels: 25
0.77 0.13 0.10
Matches are distributed among these distances:
146 9 0.05
147 102 0.53
148 6 0.03
150 1 0.01
151 2 0.01
152 1 0.01
156 1 0.01
157 4 0.02
158 67 0.35
ACGTcount: A:0.23, C:0.32, G:0.28, T:0.17
Consensus pattern (146 bp):
CAACCCTCGGTCCGGTCTGAGCATAGACTGGGAATGAACTCCCTATGCATAAGCCAACCCACGAA
ACGAGCGTGCGAGCACTCAGTCGGCCAAAGAGGCAGAACACGCAAGCCAGGGATCGGACCTGTCC
CCCCTGCGTGCTGCCA
Found at i:33782629 original size:158 final size:156
Alignment explanation
Indices: 33782334--33782896 Score: 467
Period size: 158 Copynumber: 3.6 Consensus size: 156
33782324 CCTCTGCGTG
* ** ** *
33782334 CTGCCACAACCCTCGGTCCGGTTGGGGCATAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
1 CTGCCACAACCCTCGGTCCGATCCGATCTTAGAC-TGGAATGAACTCCCTATGCCTAAGCCAACC
* * * * * * * *
33782399 CACGAAACGGGCGTGCGAGCGCTCAG-TCGGTCAGAGAGGTAGAATGCGCAAGCCAGGGATCGGC
65 CACAAAACGAGCGTGCGGGCGCTCAGCT-GGCCGGAGAGGCAAAATGCGCAAGCCA-GGATCGAC
33782463 CCTG-TCCCCCCTGCGTGCTGTCGGTCCTA
128 CC-GATCCCCCCTGCGTGCTGTCGGTCCTA
* *
33782492 CTGCCATAACCCTCGGTCCGATCCGATCTTAGACTGGGAAGGAAC-CCCGTATGCCTAAGCCAAC
1 CTGCCACAACCCTCGGTCCGATCCGATCTTAGACT-GGAATGAACTCCC-TATGCCTAAGCCAAC
* * *
33782556 CCACAAAACGAGCGTGCGGGCACTCAGCTGACCGGAGAGGCAAAATGCGCAAGCCATGGATCAAC
64 CCACAAAACGAGCGTGCGGGCGCTCAGCTGGCCGGAGAGGCAAAATGCGCAAGCCA-GGATCGAC
* * * * *
33782621 CCGATCCCCTCTTACGTGCTGTCGATCTTG
128 CCGATCCCC-CCTGCGTGCTGTCGGTCCTA
* * * * * * * * * *
33782651 TTGCCGCAACCCTCGGTCCGGTCCGATCTTAAATTTGGAATAAACTCCGTATGCCTCAGTCAACG
1 CTGCCACAACCCTCGGTCCGATCCGATCTTAGA-CTGGAATGAACTCCCTATGCCTAAGCCAACC
* * * * * ** *
33782716 CACAAAACGAGCGTTCGGGTGTTGACCTGGCCGGAGAGGCTTAATGCGTAAGCCGAGGATCGACC
65 CACAAAACGAGCGTGCGGGCGCTCAGCTGGCCGGAGAGGCAAAATGCGCAAGCC-AGGATCGACC
* * *
33782781 C-AGGCCCCCTCTGCATGCTGCCGGT-CTCA
129 CGA-TCCCCC-CTGCGTGCTGTCGGTCCT-A
* * **
33782810 CTGCCACAACCCTCGATCCGA-CTGGGGCTT-GACATGGAATGAACTCCCTATGCCTAAGCCAAC
1 CTGCCACAACCCTCGGTCCGATC-CGATCTTAGAC-TGGAATGAACTCCCTATGCCTAAGCCAAC
**
33782873 CCATGAAACG-GCCGTGCGGGCGCT
64 CCACAAAACGAG-CGTGCGGGCGCT
33782897 AATGCGCAAG
Statistics
Matches: 316, Mismatches: 75, Indels: 28
0.75 0.18 0.07
Matches are distributed among these distances:
157 6 0.02
158 154 0.49
159 152 0.48
160 4 0.01
ACGTcount: A:0.23, C:0.32, G:0.27, T:0.18
Consensus pattern (156 bp):
CTGCCACAACCCTCGGTCCGATCCGATCTTAGACTGGAATGAACTCCCTATGCCTAAGCCAACCC
ACAAAACGAGCGTGCGGGCGCTCAGCTGGCCGGAGAGGCAAAATGCGCAAGCCAGGATCGACCCG
ATCCCCCCTGCGTGCTGTCGGTCCTA
Found at i:33782629 original size:305 final size:305
Alignment explanation
Indices: 33782068--33782629 Score: 734
Period size: 305 Copynumber: 1.8 Consensus size: 305
33782058 TAAACTGGGG
* * *
33782068 ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGTCGATCGGAGAGG
1 ATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCGAGCGCTCAGTCGATCAGAGAGG
** * *
33782133 CAGAATGCGCAAGCTGGGGATCAGCCCGGTCCCTCCTGCGTGCTATCGATCCTGCGACCTCAACC
66 CAGAATGCGCAAGCCAGGGATCAGCCCGGTCCCCCCTGCGTGCTATCGATCCTACGACCTCAACC
* * * * * * **
33782198 CTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCTTATGCATAAGTCAACCCATGAAACGAG
131 CTCGGTCCGATCCGATCTTAGACTGGGAAGGAACCCCGTATGCATAAGCCAACCCACAAAACGAG
* * * * * * * **
33782263 CGTGCGGGCACTGAGTCGGCCAAAGGGGCATAACACGCAGGCCGGGGATCGACTTGATCCCCCTC
196 CGTGCGGGCACTCAGTCGACCAAAGAGGCAAAACACGCAAGCCAGGGATCAACCCGATCCCCCTC
33782328 TGCGTGCTGCCACAACCCTCGGTCCGGTTGGGGCATAGACATGGA
261 TGCGTGCTGCCACAACCCTCGGTCCGGTTGGGGCATAGACATGGA
* * *
33782373 ATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGAGCGCTCAGTCGGTCAGAGAGG
1 ATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCGAGCGCTCAGTCGATCAGAGAGG
* * * * *
33782438 TAGAATGCGCAAGCCAGGGATCGGCCCTGTCCCCCCTGCGTGCTGTCGGTCCTACTG-CCAT-AA
66 CAGAATGCGCAAGCCAGGGATCAGCCCGGTCCCCCCTGCGTGCTATCGATCCTAC-GACC-TCAA
*
33782501 CCCTCGGTCCGATCCGATCTTAGACTGGGAAGGAACCCCGTATGCCTAAGCCAACCCACAAAACG
129 CCCTCGGTCCGATCCGATCTTAGACTGGGAAGGAACCCCGTATGCATAAGCCAACCCACAAAACG
** ** *
33782566 AGCGTGCGGGCACTCAG-CTGACCGGAGAGGCAAAATGCGCAAGCCATGGATCAACCCGATCCCC
194 AGCGTGCGGGCACTCAGTC-GACCAAAGAGGCAAAACACGCAAGCCAGGGATCAACCCGATCCCC
33782630 TCTTACGTGC
Statistics
Matches: 216, Mismatches: 38, Indels: 6
0.83 0.15 0.02
Matches are distributed among these distances:
304 1 0.00
305 213 0.99
306 2 0.01
ACGTcount: A:0.23, C:0.32, G:0.28, T:0.17
Consensus pattern (305 bp):
ATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCGAGCGCTCAGTCGATCAGAGAGG
CAGAATGCGCAAGCCAGGGATCAGCCCGGTCCCCCCTGCGTGCTATCGATCCTACGACCTCAACC
CTCGGTCCGATCCGATCTTAGACTGGGAAGGAACCCCGTATGCATAAGCCAACCCACAAAACGAG
CGTGCGGGCACTCAGTCGACCAAAGAGGCAAAACACGCAAGCCAGGGATCAACCCGATCCCCCTC
TGCGTGCTGCCACAACCCTCGGTCCGGTTGGGGCATAGACATGGA
Found at i:33782820 original size:159 final size:158
Alignment explanation
Indices: 33782383--33782830 Score: 400
Period size: 159 Copynumber: 2.8 Consensus size: 158
33782373 ATGAACTCCC
* * * * * ** * * *
33782383 TATGCCTAAGCCAACCCACGAAACGGGCGTGCGAGCGCTCA-GTCGGTCAGAGAGGTAGAATGCG
1 TATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTCACCT-GACCGGAGAGGCAAAATGCG
* * *
33782447 CAAGCCAGGGATCGGCCCTGTCCCCC-CTGCGTGCTGTCGGTC-CTACTGCCATAACCCTCGGTC
65 CAAGCCAGGGATCGACCC-GACCCCCTCTGCGTGCTGTCGGTCTC-ACTGCCACAACCCTCGGTC
* *
33782510 CGATCCGATCTTAGACTGGGAAGGAACCCCG
128 CGATCCGATCTTAAACTGGGAAGAAACCCCG
*
33782541 TATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTCAGCTGACCGGAGAGGCAAAATGCGC
1 TATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTCACCTGACCGGAGAGGCAAAATGCGC
* * * * * *** *
33782606 AAGCCATGGATCAACCCGATCCCCTCTTACGTGCTGTCGATCTTGTTGCCGCAACCCTCGGTCCG
66 AAGCCAGGGATCGACCCGACCCCCTC-TGCGTGCTGTCGGTCTCACTGCCACAACCCTCGGTCCG
* * * * *
33782671 GTCCGATCTTAAATTTGGAATAAACTCCG
130 ATCCGATCTTAAACTGGGAAGAAACCCCG
* * * * *** * * ** *
33782700 TATGCCTCAGTCAACGCACAAAACGAGCGTTCGGGTGTTGACCTGGCCGGAGAGGCTTAATGCGT
1 TATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTCACCTGACCGGAGAGGCAAAATGCGC
* * * *
33782765 AAGCC-GAGGATCGACCCAGGCCCCCTCTGCATGCTGCCGGTCTCACTGCCACAACCCTCGATCC
66 AAGCCAG-GGATCGACCC-GACCCCCTCTGCGTGCTGTCGGTCTCACTGCCACAACCCTCGGTCC
33782829 GA
129 GA
33782831 CTGGGGCTTG
Statistics
Matches: 228, Mismatches: 56, Indels: 11
0.77 0.19 0.04
Matches are distributed among these distances:
157 5 0.02
158 68 0.30
159 148 0.65
160 7 0.03
ACGTcount: A:0.23, C:0.33, G:0.26, T:0.19
Consensus pattern (158 bp):
TATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTCACCTGACCGGAGAGGCAAAATGCGC
AAGCCAGGGATCGACCCGACCCCCTCTGCGTGCTGTCGGTCTCACTGCCACAACCCTCGGTCCGA
TCCGATCTTAAACTGGGAAGAAACCCCG
Found at i:33783738 original size:26 final size:26
Alignment explanation
Indices: 33783682--33783731 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
33783672 AGCATGTGCT
*
33783682 TATGCTTAGACTGGGAATGAACTCCA
1 TATGCTTAGACTGGAAATGAACTCCA
33783708 TATGCTTAGACAT-GAAATGAACTC
1 TATGCTTAGAC-TGGAAATGAACTC
33783732 TGTATGCCTA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.34, C:0.18, G:0.20, T:0.28
Consensus pattern (26 bp):
TATGCTTAGACTGGAAATGAACTCCA
Found at i:33784033 original size:158 final size:157
Alignment explanation
Indices: 33783713--33784529 Score: 618
Period size: 158 Copynumber: 5.2 Consensus size: 157
33783703 CTCCATATGC
* * **
33783713 TTAGACATGAAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCACTCAATC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCACTCAGCC
* * * * * * * * * *
33783778 GGTCGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTATGTGCTATTGATCCTG
66 GGCCGAAGAGGCAGAACGCGCAAGCCGGGGATCAGCCCGATCCCCCCTACGTGCTGTCGATCCCG
* ** ** **
33783843 CTGTCGTAACCCTCAGTCTAGTTTGATC
131 CTGCCACAACCCTCAGTCT-GACTGAGG
* ** * * *
33783871 TTAGAC-TGGGAATGAACTCCGTATGCATAAGTGAACCCATGAAACGAGCGTGCGGGCTCTGAGC
1 TTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCACTCAGC
* * * *
33783935 CGGCCGAAGAGGCATAACGCGCAAGCCTGGGATCGGCCCGATCCCCCTCTACGTGCTG-CTGGTC
65 CGGCCGAAGAGGCAGAACGCGCAAGCCGGGGATCAGCCCGATCCCCC-CTACGTGCTGTC-GATC
* * *
33783999 CCGCTACCACAACCCTCGGTCTGACTGGGG
128 CCGCTGCCACAACCCTCAGTCTGACTGAGG
* * *
33784029 TTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCACTCAGCC
* * * * *
33784094 GGCCGGAGA-GCAGAATGCGCAAGCCGGGGATCAGCCCGATCACCCCCTGCGTGCTGTCAATCCT
66 GGCCGAAGAGGCAGAACGCGCAAGCCGGGGATCAGCCCGATC-CCCCCTACGTGCTGTCGATCCC
* * * * * **
33784158 GCTGTCGCAACCCTCAGTACGGTCCGATT
130 GCTGCCACAACCCTCAGT-CTGACTGAGG
* * * * * * *
33784187 TTAGA-GTGGGAATGAACACCGTATGCCTAAGTCAACCCACGGAACGAGCATGCGAGCACTAAGC
1 TTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCACTCAGC
** * * * ** *
33784251 CAACCGAAGAGGCATAACGCGCAAGCTGGGGATCAACCCGATACCCTTCTACGTGCTGTCGGTCC
65 CGGCCGAAGAGGCAGAACGCGCAAGCCGGGGATCAGCCCGAT-CCCCCCTACGTGCTGTCGATCC
* * * * *
33784316 CGTTGCCATAACCCTCGGTCCGACTGGGG
129 CGCTGCCACAACCCTCAGTCTGACTGAGG
* * * * * ** *
33784345 CTTAGACATGGAATGAACTCCCTTTGGCTAAGCCAACCCACGAAACGGGCATATGGGCACTCAAC
1 -TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCACTCAGC
** * * * * * * * ** * * *
33784410 CGATCAAAAAGGCAGAATGCACAAGCCAGGGATCGGTCCGATCCTTCCTGCGTGCTGTCAATCCT
65 CGGCCGAAGAGGCAGAACGCGCAAGCCGGGGATCAGCCCGATCCCCCCTACGTGCTGTCGATCCC
** * * **
33784475 GCTATCGCAACCCTC-GATCTGATCCGATC
130 GCTGCCACAACCCTCAG-TCTGA-CTGAGG
*
33784504 TTAGACAGGGAATGAACTCCGTATGC
1 TTAGACATGGAATGAACTCCGTATGC
33784530 TTAGACTGGG
Statistics
Matches: 509, Mismatches: 136, Indels: 28
0.76 0.20 0.04
Matches are distributed among these distances:
157 57 0.11
158 285 0.56
159 165 0.32
160 2 0.00
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (157 bp):
TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCACTCAGCC
GGCCGAAGAGGCAGAACGCGCAAGCCGGGGATCAGCCCGATCCCCCCTACGTGCTGTCGATCCCG
CTGCCACAACCCTCAGTCTGACTGAGG
Found at i:33784304 original size:316 final size:318
Alignment explanation
Indices: 33783711--33784529 Score: 999
Period size: 316 Copynumber: 2.6 Consensus size: 318
33783701 AACTCCATAT
*
33783711 GCTTAGACATGAAATGAAC-TCTGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCACTCA
1 GCTTAGACATGGAATGAACTTC-GTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCACTCA
* * * ** * **
33783775 ATCGGTCGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTATGTGCTATTGATC
65 ACCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCAATC
* * ** *
33783840 CTGCTGTCGTAACCCTCAGT-CTAGTTTGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTG
130 CTGCTGTCGCAACCCTCAGTACTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTC
* * * * * **
33783904 AACCCATGAAACGAGCGTGCGGGCTCTGAGCCGGCCGAAGAGGCATAACGCGCAAGCCTGGGATC
195 AACCCACGAAACGAGCATGCGAGCACTAAGCCAACCGAAGAGGCATAACGCGCAAGCCTGGGATC
** * *
33783969 GGCCCGATCCCCCTCTACGTGCTG-CTGGTCCCGCTACCACAACCCTCGGTCTGACTGGG
260 AACCCGATACCCCTCTACGTGCTGTC-GGTCCCGCTACCACAACCCTCGGTCCGACTGGG
* * *
33784028 G-TTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCACTCAA
* *
33784092 CCGGCCGGAGA-GCAGAATGCGCAAGCCGGGGATCAGCCCGATCACCCCCTGCGTGCTGTCAATC
66 CCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATC-CCCCCTGCGTGCTGTCAATC
* * * *
33784156 CTGCTGTCGCAACCCTCAGTAC-GGTCCGATTTTAGAGTGGGAATGAACACCGTATGCCTAAGTC
130 CTGCTGTCGCAACCCTCAGTACTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTC
*
33784220 AACCCACGGAACGAGCATGCGAGCACTAAGCCAACCGAAGAGGCATAACGCGCAAG-CTGGGGAT
195 AACCCACGAAACGAGCATGCGAGCACTAAGCCAACCGAAGAGGCATAACGCGCAAGCCT-GGGAT
* * * *
33784284 CAACCCGATACCCTTCTACGTGCTGTCGGTCCCGTTGCCATAACCCTCGGTCCGACTGGG
259 CAACCCGATACCCCTCTACGTGCTGTCGGTCCCGCTACCACAACCCTCGGTCCGACTGGG
* * * * * * **
33784344 GCTTAGACATGGAATGAACTCCCTTTGGCTAAGCCAACCCACGAAACGGGCATATGGGCACTCAA
1 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCACTCAA
* ** * * * * **
33784409 CCGATCAAAAAGGCAGAATGCACAAGCCAGGGATCGGTCCGATCCTTCCTGCGTGCTGTCAATCC
66 CCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCAATCC
* * *
33784474 TGCTATCGCAACCCTC-G-ATCTGATCCGATCTTAGACAGGGAATGAACTCCGTATGC
131 TGCTGTCGCAACCCTCAGTA-CTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
33784530 TTAGACTGGG
Statistics
Matches: 426, Mismatches: 67, Indels: 18
0.83 0.13 0.04
Matches are distributed among these distances:
315 32 0.08
316 239 0.56
317 127 0.30
318 28 0.07
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (318 bp):
GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCACTCAA
CCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCAATCC
TGCTGTCGCAACCCTCAGTACTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCA
ACCCACGAAACGAGCATGCGAGCACTAAGCCAACCGAAGAGGCATAACGCGCAAGCCTGGGATCA
ACCCGATACCCCTCTACGTGCTGTCGGTCCCGCTACCACAACCCTCGGTCCGACTGGG
Found at i:33784532 original size:26 final size:26
Alignment explanation
Indices: 33784503--33784555 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
33784493 CTGATCCGAT
33784503 CTTAGACAGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
* *
33784529 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
33784555 C
1 C
33784556 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Found at i:33785604 original size:26 final size:26
Alignment explanation
Indices: 33785566--33785618 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33785556 GGCTCAAAAT
33785566 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
33785592 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
33785618 C
1 C
33785619 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:33787387 original size:170 final size:169
Alignment explanation
Indices: 33787130--33787436 Score: 375
Period size: 170 Copynumber: 1.8 Consensus size: 169
33787120 AACTTCATAG
* * * * *
33787130 GCCTAAGTCAACCCACAAAACGAGTGTATGGGCACTCAGCCGGTCGAAGAGGCATAATGCGTAAG
1 GCCTAAGCCAACCCACAAAACGAGCGTACGGGCACTCAGCCGGTCGAAAAGGCAGAATGCGTAAG
* *
33787195 CCGGGGATGAACCCGATCCCCCTCTGCATGCTGTCGATCCCGCTGCCAGTCCTACTGCCACAACC
66 CCGAGGATGAACCCGATCCCCCT-TACATGCTGTCGATCCCGCTG-CAGTCCTACTGCCACAACC
33787260 CTC-GTCCAACTAGGGCTTAGACATGGAACGAACTCCGTAT
129 CTCGGTCCAACTAGGGCTTAGACATGGAACGAACTCCGTAT
* * ** * *
33787300 GCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGTCGGTCGAAAAGGTAGAATGCGTAAG
1 GCCTAAGCCAACCCACAAAACGAGCGTACGGGCACTCAGCCGGTCGAAAAGGCAGAATGCGTAAG
* * * * * ** **
33787365 CTGAGGATCG-GCCCGGTCCCCCTTACGTGCTGTCGATCCTGCTGTTGTCCTACTGCCGTAACCC
66 CCGAGGAT-GAACCCGATCCCCCTTACATGCTGTCGATCCCGCTGCAGTCCTACTGCCACAACCC
33787429 TCGGTCCA
130 TCGGTCCA
33787437 GTCTGATATT
Statistics
Matches: 113, Mismatches: 22, Indels: 5
0.81 0.16 0.04
Matches are distributed among these distances:
168 18 0.16
169 23 0.20
170 71 0.63
171 1 0.01
ACGTcount: A:0.23, C:0.32, G:0.26, T:0.19
Consensus pattern (169 bp):
GCCTAAGCCAACCCACAAAACGAGCGTACGGGCACTCAGCCGGTCGAAAAGGCAGAATGCGTAAG
CCGAGGATGAACCCGATCCCCCTTACATGCTGTCGATCCCGCTGCAGTCCTACTGCCACAACCCT
CGGTCCAACTAGGGCTTAGACATGGAACGAACTCCGTAT
Found at i:33788474 original size:160 final size:159
Alignment explanation
Indices: 33788129--33788579 Score: 380
Period size: 160 Copynumber: 2.8 Consensus size: 159
33788119 CAACGTTTGG
* * *
33788129 TCCAGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGT
1 TCCAGCTGGGGCTTAGACATGGAATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTGA
* * * ** * *
33788194 GGGCACTCAGCCGGTCGGGGAGGCAGAATGCACAAGCCGGGGATCGACTTGGTCCCTCCCTGCGT
66 AGGCACTAAGCCGATCGAAGAGGCAGAATGCACAAGCCGGGGATCGACTCGATCCCTCCCTGCGT
* * ** *
33788259 GCTATCGATCCTGCCGCTGCAACCCTCAG
131 GCTACCGATCCCGCCGCCACAACCCTCAA
* * ** * * *
33788288 TCC-GATCCGATCTTAGAC-TGGGAATGAATTGCATATGCATAAGTCAACCCACT-AAACGAGCG
1 TCCAGCT-GGGGCTTAGACAT-GGAATGAACTCCATATGCCTAAGTCAACCCA-TGAAACGAGCG
* * *
33788350 TGCAAGGCACTAAGCCGATCGAAGAGGCATAATGCGCAAGTCGGGGATCGACTCGAT-CC-CCCT
63 TG-AAGGCACTAAGCCGATCGAAGAGGCAGAATGCACAAGCCGGGGATCGACTCGATCCCTCCCT
* *
33788413 GTACGTGCTGCC-AGTCCCGCTGCCACAACCCTCAA
127 G--CGTGCTACCGA-TCCCGCCGCCACAACCCTCAA
* * * *
33788448 TCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGTCAACCAACGAAAC-AGGCATG
1 TCCAGCTGGGGCTTAGACATGGAATGAACTCCATATGCCTAAGTCAACCCATGAAACGA-GCGTG
** * ** * ** * * *
33788512 CGGGCGCTCAA-CCGGCCAAAGAGGCAGAATGTGCAAGCCAGGGATCGACCCGGTCCC-CCCTGC
65 AAGGCACT-AAGCCGATCGAAGAGGCAGAATGCACAAGCCGGGGATCGACTCGATCCCTCCCTGC
33788575 GTGCT
129 GTGCT
33788580 GTCGATCTTG
Statistics
Matches: 229, Mismatches: 50, Indels: 27
0.75 0.16 0.09
Matches are distributed among these distances:
158 14 0.06
159 91 0.40
160 121 0.53
161 3 0.01
ACGTcount: A:0.25, C:0.31, G:0.27, T:0.18
Consensus pattern (159 bp):
TCCAGCTGGGGCTTAGACATGGAATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTGA
AGGCACTAAGCCGATCGAAGAGGCAGAATGCACAAGCCGGGGATCGACTCGATCCCTCCCTGCGT
GCTACCGATCCCGCCGCCACAACCCTCAA
Found at i:33788757 original size:134 final size:134
Alignment explanation
Indices: 33788531--33788785 Score: 395
Period size: 134 Copynumber: 1.9 Consensus size: 134
33788521 AACCGGCCAA
* * *
33788531 AGAGGCAGAATGTGCAAGCCAGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCTTGCTGTCG
1 AGAGGCAGAATGTGCAAGCCAGGGATCGACCCGGTCCCCCCTGCGTGCTATCGATCCTACTGTCG
*
33788596 CAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGCTCAGTCGA
66 CAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGCTCAGTCGA
33788661 CTGG
131 CTGG
* * * * *
33788665 AGAGGCAGAATGTGCAAGTCGGGGATCGGCCCGGTCCCCCCTGTGTGTTATCGATCCTACTG-CT
1 AGAGGCAGAATGTGCAAGCCAGGGATCGACCCGGTCCCCCCTGCGTGCTATCGATCCTACTGTC-
* *
33788729 GCAACCCTCGGTCTGATCTGATTTTAGACTGGGAATGAACTTCATATGCTTAGACTG
65 GCAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTG
33788786 GGGATGAACT
Statistics
Matches: 109, Mismatches: 11, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
133 1 0.01
134 108 0.99
ACGTcount: A:0.20, C:0.27, G:0.28, T:0.25
Consensus pattern (134 bp):
AGAGGCAGAATGTGCAAGCCAGGGATCGACCCGGTCCCCCCTGCGTGCTATCGATCCTACTGTCG
CAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGCTCAGTCGA
CTGG
Found at i:33788802 original size:26 final size:26
Alignment explanation
Indices: 33788752--33788803 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
33788742 TGATCTGATT
*
33788752 TTAGACTGGGAATGAACTTCATATGC
1 TTAGACTGGGAATGAACTCCATATGC
* *
33788778 TTAGACTGGGGATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCATATGC
33788804 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGC
Found at i:33789169 original size:26 final size:26
Alignment explanation
Indices: 33789131--33789183 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33789121 CCGGTCCGAT
*
33789131 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
33789157 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
33789183 C
1 C
33789184 CTAAGCCAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:33789660 original size:26 final size:26
Alignment explanation
Indices: 33789631--33789683 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
33789621 CCGATCCGAT
33789631 CTTACACTGGAAATGAACTCCGTATG
1 CTTACACTGGAAATGAACTCCGTATG
* ** *
33789657 CTTAGACTGGGGATGAACTCTGTATG
1 CTTACACTGGAAATGAACTCCGTATG
33789683 C
1 C
33789684 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTACACTGGAAATGAACTCCGTATG
Found at i:33790284 original size:11 final size:11
Alignment explanation
Indices: 33790270--33790295 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
33790260 GCTCTCCGGT
33790270 GATGCTCCGAC
1 GATGCTCCGAC
33790281 GATGCTCCGAC
1 GATGCTCCGAC
33790292 GATG
1 GATG
33790296 GTGCCCCGGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.19, C:0.31, G:0.31, T:0.19
Consensus pattern (11 bp):
GATGCTCCGAC
Found at i:33790405 original size:26 final size:26
Alignment explanation
Indices: 33790365--33790417 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
33790355 GGCTCAAAAT
*
33790365 CTTAGACTGGAAATGAACTCTGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
*
33790391 CTTAGACATGG-AATGCACTCCGTATG
1 CTTAGAC-TGGAAATGAACTCCGTATG
33790417 C
1 C
33790418 CTAAGCTAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:33790691 original size:158 final size:158
Alignment explanation
Indices: 33790400--33790891 Score: 368
Period size: 158 Copynumber: 3.1 Consensus size: 158
33790390 GCTTAGACAT
* * *
33790400 GGAATGCACTCCGTATGCCTAAGCTAACCCACGAAACGAACGTGCGGGTGCTCAGTCGGTCGGAG
1 GGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGAACGTGCGGGTGCTCAGTCGGCCGAAG
* * * ****
33790465 AGGCAGAATGCGCAAGCCGGGGATCGACCCAATCCCCCCTGCATGCTGTCGATCCTACTATTGTA
66 AGGCAGAATGCGCAAGCCAGGGATCGAACCAATCCCCCCTGCATGCTGCCGATCCTACTACCACA
33790530 ACCCTCAGTCTGGTCCGATCTTAGATGG
131 ACCCTCAGTCTGGTCCGATCTTAGATGG
* * * * *
33790558 GGAATGAACTCCGTAT-CCATAAG-TCAAGCCACGAAATGAGCGTGTGGGTGCTGAG-CAGGCCG
1 GGAATGAACTCCGTATGCC-TAAGCT-AACCCACGAAACGAACGTGCGGGTGCTCAGTC-GGCCG
* ** * * * *
33790620 AAGAGGCATAATGCGCAAGCCAGGGATCGAACCGGTCCCCTCTGCGTGCTGCCGGTCCTGCTACC
63 AAGAGGCAGAATGCGCAAGCCAGGGATCGAACCAATCCCCCCTGCATGCTGCCGATCCTACTACC
* ** * ** ***
33790685 ACAACCCTCAATCCAG-CTGGGGCTTAGACAT
128 ACAACCCTCAGTCTGGTC-CGATCTTAGATGG
* * * * * ** * ** *
33790716 GGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACTAGCAAGCGGGTGCTCAGCCGGTTGGAG
1 GGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGAACGTGCGGGTGCTCAGTCGGCCGAAG
* * * * * * * *
33790781 AGGCAGAATGCGCAAGCC-GAGGATCGACCCAGTCCCCCTTGCGTGCTGTCAATCCTGCTGCCAC
66 AGGCAGAATGCGCAAGCCAG-GGATCGAACCAATCCCCCCTGCATGCTGCCGATCCTACTACCAC
* * * *
33790845 AAACCTC-GATCTAGTCTGATTTTAGACT-G
130 AACCCTCAG-TCTGGTCCGATCTTAGA-TGG
* *
33790874 GAAATGAACTCTGTATGC
1 GGAATGAACTCCGTATGC
33790892 TTAGACTGGG
Statistics
Matches: 260, Mismatches: 63, Indels: 22
0.75 0.18 0.06
Matches are distributed among these distances:
157 6 0.02
158 250 0.96
159 4 0.02
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (158 bp):
GGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGAACGTGCGGGTGCTCAGTCGGCCGAAG
AGGCAGAATGCGCAAGCCAGGGATCGAACCAATCCCCCCTGCATGCTGCCGATCCTACTACCACA
ACCCTCAGTCTGGTCCGATCTTAGATGG
Found at i:33790895 original size:26 final size:26
Alignment explanation
Indices: 33790866--33790917 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
33790856 TAGTCTGATT
33790866 TTAGACTGGAAATGAAC-TCTGTATGC
1 TTAGACTGGAAATGAACTTC-GTATGC
**
33790892 TTAGACTGGGGATGAACTTCGTATGC
1 TTAGACTGGAAATGAACTTCGTATGC
33790918 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.31
Consensus pattern (26 bp):
TTAGACTGGAAATGAACTTCGTATGC
Found at i:33791456 original size:112 final size:112
Alignment explanation
Indices: 33791241--33791445 Score: 252
Period size: 112 Copynumber: 1.8 Consensus size: 112
33791231 ACTCTGTATG
*
33791241 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGACGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGACGCTCAGT
* *
33791306 CGACCGAAGAGGTAGAATGCGCATGTCGAGGACTGACCCAATCCAAT
66 CGACCGAAGAGGCAGAATGCGCAAGTCGAGGACTGACCCAATCCAAT
* * ** * * *
33791353 CTTAGACTTGGAATGAACTCTGTATGCCTAAGTTATCCCACGAAATGAGTGTGCAGG-CGCTGAG
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGC-GGACGCTCAG
** * *
33791417 -CTGATGGGAGAGGCATAATGCGCAAGTCG
65 TC-GACCGAAGAGGCAGAATGCGCAAGTCG
33791446 GGGATCGACC
Statistics
Matches: 77, Mismatches: 14, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
111 1 0.01
112 74 0.96
113 2 0.03
ACGTcount: A:0.29, C:0.23, G:0.28, T:0.20
Consensus pattern (112 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGACGCTCAGT
CGACCGAAGAGGCAGAATGCGCAAGTCGAGGACTGACCCAATCCAAT
Found at i:33792429 original size:26 final size:26
Alignment explanation
Indices: 33792391--33792443 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33792381 GGCTTAAAAT
*
33792391 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTATATG
33792417 CTTAGACAT-GGAATGAACTCTATATG
1 CTTAGAC-TGGGAATGAACTCTATATG
33792443 C
1 C
33792444 CTAAGCCACA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTATATG
Found at i:33792941 original size:26 final size:26
Alignment explanation
Indices: 33792890--33792942 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
33792880 CCGGTTCGAT
**
33792890 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
33792916 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
33792942 C
1 C
33792943 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:33793579 original size:26 final size:26
Alignment explanation
Indices: 33793543--33793595 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
33793533 CTGGTCTGAT
33793543 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
33793569 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
33793595 C
1 C
33793596 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:33793965 original size:26 final size:26
Alignment explanation
Indices: 33793936--33793988 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33793926 CCGATCTGAT
33793936 CTTAGACTG-GGAATAAACTCTGTATG
1 CTTAGACTGAGG-ATAAACTCTGTATG
*
33793962 CTTAGACTGAGGATGAACTCTGTATG
1 CTTAGACTGAGGATAAACTCTGTATG
33793988 C
1 C
33793989 CTAACTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGAGGATAAACTCTGTATG
Found at i:33794670 original size:26 final size:26
Alignment explanation
Indices: 33794633--33794683 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
33794623 GGTTTGATCC
33794633 TAGAATGAGAATGAACTCCGTATGCT
1 TAGAATGAGAATGAACTCCGTATGCT
*
33794659 TAGACATG-GAATGAACTCTGTATGC
1 TAGA-ATGAGAATGAACTCCGTATGC
33794684 CTAATTCAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.33, C:0.16, G:0.24, T:0.27
Consensus pattern (26 bp):
TAGAATGAGAATGAACTCCGTATGCT
Found at i:33795633 original size:158 final size:156
Alignment explanation
Indices: 33795248--33795666 Score: 384
Period size: 158 Copynumber: 2.7 Consensus size: 156
33795238 AACTTCGTAT
* ** *
33795248 GCTTAGACATGGAATGCACTCTGTATGCCTAAGCTAACCCACGAAACGAGCGTACGG-GCATTCA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACGGCGC--TCA
* * * * *
33795312 GCCGGTCGGAGAGGCAGAATGCGTAAGTTGAGGATCGACCCGATCCCCCTGCGTGCTATCGATCC
64 GCCGATCGAAGAGGCAGAATGCGTAAGCTGGGGATCGACCCGATCCCCCTGCGTGCTACCGATCC
* * *
33795377 TACTGTAGCAAACCTCGGTCCGGTCCGA
129 TACTGCAGCAAACCTCAGTCCGCTCCGA
* * * * * * * *
33795405 TCTTA-AC-TGGGAATGAATTTCATATGCATAAGTCAACCCACGAAATGAGCGTACGGGCAGTTG
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTAC-GGC-GCTC
* * * *
33795468 AGCCGATCGAAGAGGCATAATGCGTAAGCTGGGGATCGGCCCGATCCCTTCTGCGTGCTGCCGAT
63 AGCCGATCGAAGAGGCAGAATGCGTAAGCTGGGGATCGACCCGATCCC-CCTGCGTGCTACCGAT
* * * * *
33795533 CGTACTGCCA-CAACCCTTAGTCCGACT-GGG
127 CCTACTG-CAGCAAACCTCAGTCCG-CTCCGA
* *
33795563 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGAGTGTA-GGCGCTCA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAAC--GAGCGTACGGCGCTCA
* * *
33795627 GCCGATC-AGAGAGGCAGAATGCGCAAGCCGGAGATCGACC
64 GCCGATCGA-AGAGGCAGAATGCGTAAGCTGGGGATCGACC
33795667 TGGTCCCCTG
Statistics
Matches: 206, Mismatches: 44, Indels: 23
0.75 0.16 0.08
Matches are distributed among these distances:
155 1 0.00
156 38 0.18
157 50 0.24
158 71 0.34
159 39 0.19
160 1 0.00
161 6 0.03
ACGTcount: A:0.26, C:0.27, G:0.28, T:0.19
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACGGCGCTCAGC
CGATCGAAGAGGCAGAATGCGTAAGCTGGGGATCGACCCGATCCCCCTGCGTGCTACCGATCCTA
CTGCAGCAAACCTCAGTCCGCTCCGA
Found at i:33795977 original size:184 final size:182
Alignment explanation
Indices: 33795563--33795988 Score: 484
Period size: 184 Copynumber: 2.3 Consensus size: 182
33795553 TCCGACTGGG
* * * * * **
33795563 GCTTAGAC-ATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGAGTGTAGGCGCTCA
1 GCTTAGACTA-GGGATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * *
33795627 GCCGATCAGAGAGGCAGAATGCGCAAGCCGGAGATCGACCTGGTCCCCTGTGTCTACCAATCCTG
65 GCCGACCAGAGAGGCAGAATACACAAGCCGGAGATCGACCTGATCCCCTGTGTCTACCAATCCTG
* * * *
33795692 TTACCCGCAACCCTCGGTCTAGTTCGATCTTAGATTGGGAATGAACTCCGTAT
130 CTACCCGCAACCCTCGGTCGAGTTCGATCTTAGACTGGGAATGAACTCCATAT
* * * *
33795745 GCTTACACT-GGGAATGAAATCCATATGCTTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCA
1 GCTTAGACTAGGG-ATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * *
33795809 GCCGACCAGAGAGGCAGGATACACAAGTCGGGGATCGACTTGATCCCCCTGTGTGCTGCCGATCC
65 GCCGACCAGAGAGGCAGAATACACAAGCCGGAGATCGACCTGAT-CCCCTGTGT-CTACCAATCC
*
33795874 TGCTACCCTGCAACCCTCGTTCGA--TCTGATCTTAGACTGGGAATGAACAT-CATAT
128 TGCTACCC-GCAACCCTCGGTCGAGTTC-GATCTTAGACTGGGAATGAAC-TCCATAT
** * *
33795929 GCTTAGACTAGGGATGAACTCTGTATGCCTAAGTAAACCCATGAAACGAGCGTGCGGGCG
1 GCTTAGACTAGGGATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
33795989 GTGAGCCAAC
Statistics
Matches: 202, Mismatches: 34, Indels: 14
0.81 0.14 0.06
Matches are distributed among these distances:
181 2 0.01
182 85 0.42
183 11 0.05
184 87 0.43
185 17 0.08
ACGTcount: A:0.26, C:0.27, G:0.26, T:0.21
Consensus pattern (182 bp):
GCTTAGACTAGGGATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGACCAGAGAGGCAGAATACACAAGCCGGAGATCGACCTGATCCCCTGTGTCTACCAATCCTGC
TACCCGCAACCCTCGGTCGAGTTCGATCTTAGACTGGGAATGAACTCCATAT
Found at i:33796353 original size:156 final size:158
Alignment explanation
Indices: 33795942--33796441 Score: 429
Period size: 158 Copynumber: 3.2 Consensus size: 158
33795932 TAGACTAGGG
* * * * * *
33795942 ATGAACTCTGTATGCCTAAGTAAACCCATGAAACGAGCGTGCGGGCGGTGAGCC-AACTAAATAG
1 ATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTGAGCCGGAC-GAAGAG
* * * * *
33796006 GCATAATGCACAAGCCAGGGATTGGCCCGGTCCCCTCTACGTGCTGTTGGTCCTGCTGCCACAAC
65 GCATAATGCGCAAGCCGGGGATCGGCCCGGTCCCCTCTACGTGCTGTCGATCCTGCTGCCACAAC
* *
33796071 CCTCGGTTCGGGTGGCACTTAGATATGGA
130 CCTCGGTTCGGATGCCACTTAGATATGGA
* * ** * * ** * *
33796100 ATGAACTCCGTATGCCTAAGCCAACCCAAAAAACGAGCGTGCAGGTGCTCAGTTGGCCGGAGAGG
1 ATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTGAGCCGGACGAAGAGG
* * * ** * *
33796165 CAGAATGCGCAAGCTGGGGACCAACCCAGTCCCC-CTACGTGCTGTCGATCC-GCTGCCGCAACC
66 CATAATGCGCAAGCCGGGGATCGGCCCGGTCCCCTCTACGTGCTGTCGATCCTGCTGCCACAACC
** *
33796228 CTTTGTTC-GAT-CCAATCTTAGA-CTGAGA
131 CTCGGTTCGGATGCC-A-CTTAGATATG-GA
* * *
33796256 ATGAACTCTGTATGCATAAGTCAACCCATGAAACGAGCGTGTGGGTGCTGAGCCGGTCGAAGAGG
1 ATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTGAGCCGGACGAAGAGG
* * * * * ** *
33796321 TATAATGCGCAAGCCGGGGATCGGCCCGGTCCCCTCTATGGGCTGTAGGTCCCACTACCACAACC
66 CATAATGCGCAAGCCGGGGATCGGCCCGGTCCCCTCTACGTGCTGTCGATCCTGCTGCCACAACC
* * * ** *
33796386 CTCGGTCCAGCTAG-GGCTTAGACATGGA
131 CTCGGTTCGGAT-GCCACTTAGATATGGA
** *
33796414 ATGAACTCCCTATGCCTAAGCCAACCCA
1 ATGAACTCTGTATGCCTAAGTCAACCCA
33796442 CAAAACGGGC
Statistics
Matches: 262, Mismatches: 70, Indels: 20
0.74 0.20 0.06
Matches are distributed among these distances:
154 1 0.00
155 5 0.02
156 105 0.40
157 28 0.11
158 118 0.45
159 5 0.02
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.20
Consensus pattern (158 bp):
ATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTGAGCCGGACGAAGAGG
CATAATGCGCAAGCCGGGGATCGGCCCGGTCCCCTCTACGTGCTGTCGATCCTGCTGCCACAACC
CTCGGTTCGGATGCCACTTAGATATGGA
Found at i:33796468 original size:158 final size:158
Alignment explanation
Indices: 33796004--33796471 Score: 444
Period size: 156 Copynumber: 3.0 Consensus size: 158
33795994 CCAACTAAAT
* * * * *
33796004 AGGCATAATGCACAAGCCAGGGATTGGCCCGGTCCCCTCTACGTGCTGTTGGTCCTGCTGCCACA
1 AGGCATAATGCGCAAGCCGGGGATCGGCCCGGTCCCCTCTACGTGCTGTAGGTCCCGCTGCCACA
* * * *
33796069 ACCCTCGGTTCGGGT-GGCACTTAGATATGGAATGAACTCCGTATGCCTAAGCCAACCCAAAAAA
66 ACCCTCGGTCCAGCTAGG-ACTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAAAAAA
** *
33796133 CGAGCGTGCAGGTGCTCAGTTGGCCGGAG
130 CGAGCGTGCAGGTGCTCAGCCGGCCGAAG
* * * ** * * * *
33796162 AGGCAGAATGCGCAAGCTGGGGACCAACCCAGTCCCC-CTACGTGCTGTCGAT-CCGCTGCCGCA
1 AGGCATAATGCGCAAGCCGGGGATCGGCCCGGTCCCCTCTACGTGCTGTAGGTCCCGCTGCCACA
* * * * * * * * **
33796225 ACCCTTTGTTCGATCCA--ATCTTAGAC-TGAGAATGAACTCTGTATGCATAAGTCAACCCATGA
66 ACCC-TCGGTCCAGCTAGGA-CTTAGACATG-GAATGAACTCCGTATGCCTAAGCCAACCCAAAA
** * *
33796287 AACGAGCGTGTGGGTGCTGAGCCGGTCGAAG
128 AACGAGCGTGCAGGTGCTCAGCCGGCCGAAG
* * * * *
33796318 AGGTATAATGCGCAAGCCGGGGATCGGCCCGGTCCCCTCTATGGGCTGTAGGTCCCACTACCACA
1 AGGCATAATGCGCAAGCCGGGGATCGGCCCGGTCCCCTCTACGTGCTGTAGGTCCCGCTGCCACA
* * *
33796383 ACCCTCGGTCCAGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAAC
66 ACCCTCGGTCCAGCTAGGACTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAAAAAAC
* * *
33796448 GGGCATGCAGGCGCTCAGCCGGCC
131 GAGCGTGCAGGTGCTCAGCCGGCC
33796472 AGAGAGGTAG
Statistics
Matches: 234, Mismatches: 67, Indels: 18
0.73 0.21 0.06
Matches are distributed among these distances:
155 3 0.01
156 101 0.43
157 34 0.15
158 94 0.40
159 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (158 bp):
AGGCATAATGCGCAAGCCGGGGATCGGCCCGGTCCCCTCTACGTGCTGTAGGTCCCGCTGCCACA
ACCCTCGGTCCAGCTAGGACTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAAAAAAC
GAGCGTGCAGGTGCTCAGCCGGCCGAAG
Found at i:33796595 original size:26 final size:26
Alignment explanation
Indices: 33796559--33796611 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
33796549 CTGTCCCAAT
*
33796559 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
33796585 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
33796611 C
1 C
33796612 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:33797318 original size:26 final size:26
Alignment explanation
Indices: 33797281--33797332 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
33797271 GCTCAAAATG
33797281 TTAGACTGGGAAAGAACTCCGTATGC
1 TTAGACTGGGAAAGAACTCCGTATGC
* *
33797307 TTAGAC-GTGGAATGAACTTCGTATGC
1 TTAGACTG-GGAAAGAACTCCGTATGC
33797333 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.29, C:0.17, G:0.27, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAAAGAACTCCGTATGC
Found at i:33797713 original size:159 final size:157
Alignment explanation
Indices: 33797303--33797806 Score: 412
Period size: 159 Copynumber: 3.2 Consensus size: 157
33797293 AGAACTCCGT
* *
33797303 ATGCTTAGACGTGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACT-AACGTGCGGGCGCT
1 ATGCTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAA-TGAGCGTGCGGGCGCT
* * * *** *
33797367 CAACCGGACGGAGAGGTAGAATGCGCAAGCTGGGGATCGACCGGTCCCCCCCTTTGTGCTGCCAA
64 CAGCC-GACGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCGGTCCCCCCCTGCATACTGCCAA
** ** *
33797432 TCCTGCGGCCACAACCCTCGGTCCGGTCTG
128 TCCCACGGCCACAACCCTCAATCCGATCTG
* * * * * ** *
33797462 AT-CTTAGACTAGGAATGAACTCCGTATTCATAAGTCAACCCATGAAATGAGTGTTCAAGCGCTG
1 ATGCTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTC
* * * * * * *
33797526 AGCCGACCGAAGAGAC-GTATTACACAAGCCGGGGATCTGCCCGGTCCCCCTCTGCATACTGCCA
65 AGCCGA-CGGAGAGGCAG-AATGCGCAAGCCGGGGATC-GACCGGTCCCCCCCTGCATACTGCCA
* *
33797590 GTCCCACTGCCACAACCCTCAATCCGAT-TG
127 ATCCCACGGCCACAACCCTCAATCCGATCTG
* * *
33797620 -TGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGTGCT
1 AT-GCTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCT
* * * * * ** *
33797684 CAGTCGACTGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGAT-CCCCACTGCGTGTTGCCG
64 CAGCCGAC-GGAGAGGCAGAATGCGCAAGCCGGGGATCGA-CCGGTCCCCCCCTGCATACTGCCA
** * *
33797748 ATCCTGCTGCCGCAACCCTCAATCC-AGTCTG
127 ATCCCACGGCCACAACCCTCAATCCGA-TCTG
* *
33797779 AT-CTTAGACTAGAATGAACTCCATATGC
1 ATGCTTAGACTGGAATGAACTCCGTATGC
33797807 TTAGACTGGG
Statistics
Matches: 269, Mismatches: 62, Indels: 30
0.75 0.17 0.08
Matches are distributed among these distances:
157 24 0.09
158 118 0.44
159 124 0.46
160 3 0.01
ACGTcount: A:0.25, C:0.30, G:0.25, T:0.20
Consensus pattern (157 bp):
ATGCTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCA
GCCGACGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCGGTCCCCCCCTGCATACTGCCAATCC
CACGGCCACAACCCTCAATCCGATCTG
Found at i:33797809 original size:25 final size:26
Alignment explanation
Indices: 33797781--33797832 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
33797771 CCAGTCTGAT
33797781 CTTAGACT-AGAATGAACTCCATATG
1 CTTAGACTGAGAATGAACTCCATATG
* * *
33797806 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCATATG
33797832 C
1 C
33797833 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 8 0.35
26 15 0.65
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCATATG
Found at i:33799122 original size:16 final size:16
Alignment explanation
Indices: 33799085--33799135 Score: 52
Period size: 16 Copynumber: 3.3 Consensus size: 16
33799075 ATTATTTTAA
* *
33799085 ATATAAATATAAAATT
1 ATATATATATAAAAAT
*
33799101 AAATATATATAAAAAT
1 ATATATATATAAAAAT
*
33799117 ATATATA-AT-TAAAT
1 ATATATATATAAAAAT
33799131 ATATA
1 ATATA
33799136 ATTAAAAGAA
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
14 9 0.30
15 2 0.07
16 19 0.63
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (16 bp):
ATATATATATAAAAAT
Found at i:33799134 original size:12 final size:12
Alignment explanation
Indices: 33799088--33799141 Score: 63
Period size: 12 Copynumber: 4.3 Consensus size: 12
33799078 ATTTTAAATA
*
33799088 TAAATATAAAAT
1 TAAATATATAAT
*
33799100 TAAATATATATAA
1 TAAATATATA-AT
*
33799113 AAATATATATAAT
1 TAA-ATATATAAT
33799126 TAAATATATAAT
1 TAAATATATAAT
33799138 TAAA
1 TAAA
33799142 AGAATAATTT
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
12 22 0.63
13 6 0.17
14 7 0.20
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (12 bp):
TAAATATATAAT
Found at i:33800529 original size:26 final size:26
Alignment explanation
Indices: 33800491--33800543 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
33800481 GCTCAAAAAT
33800491 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
33800517 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCTGTATG
33800543 C
1 C
33800544 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:33801041 original size:25 final size:26
Alignment explanation
Indices: 33800991--33801042 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
33800981 CCAGTTTGAT
33800991 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
*
33801017 CTTAGACTAGG-ATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
33801042 C
1 C
33801043 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 14 0.56
26 11 0.44
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:33801533 original size:26 final size:26
Alignment explanation
Indices: 33801504--33801555 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
33801494 CCGGTCCAAT
*
33801504 CTTAGACTAGGAATTAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
33801530 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
33801556 TCTAAGTCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:33802633 original size:159 final size:156
Alignment explanation
Indices: 33802239--33803067 Score: 498
Period size: 158 Copynumber: 5.2 Consensus size: 156
33802229 AACTCTGTAT
* ** * *
33802239 GCTTAGACATGGAATGAACTATGTATGCCTAAGCCAACCCACGAAACGAGCGTA-CGGGCGCTCA
1 GCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCG-AGC-GG-GCTCG
* * * * *
33802303 ACCAGTCGGACAGGCAGAATGCGCAAGCC-GAGGATCGACCCGATCCCCCCTGCGTGTTGTCGAT
63 ACCAGTCGGAGAGGCAGAATGCGCAAGCCAG-GGATCGACCCGGTCCCCCCTACGTGCTGCCGAT
**
33802367 CCTGCTACCGTAACCCTCGGTCCGGTCCAA
127 CCTGCTACCACAACCCTCGGTCCGGTCCAA
* ** * * * *
33802397 TCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTGCGGGCACTGAA
1 GCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGAGCGGGCTC-G-A
* * *
33802462 CCAG-CTGAAGAGGCATAACGCGCAAGCCAGGGATCGACCCGGTCCCCCTCTACGTGCTGCC-AG
64 CCAGTC-GGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGGTCCCCC-CTACGTGCTGCCGA-
* * * * *
33802525 TCTTGCTGCCACAACCCTCGGTCTGGT-TAGG
126 TCCTGCTACCACAACCCTCGGTCCGGTCCA-A
*
33802556 GCTTAGACAAGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAC-AGGCGAGCAGGTGCTCG
1 GCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGA-GCGAGC-GG-GCTCG
* * * * * * * *
33802620 ACCGGTCGGAGAGGTAGAATGCACAAGCTAGGGATCGGCTCGGT-CCCCC-GCGTGCTGTCGATC
63 ACCAGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGGTCCCCCCTACGTGCTGCCGATC
* * * * *
33802683 CTACTACCGCAACCCTCGGTCTGATCCGA
128 CTGCTACCACAACCCTCGGTCCGGTCCAA
* ** * * * * *
33802712 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTTAG
1 GCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGAGCGGGCTC-GA-
* * * * * *
33802777 TCGGCCAGAGAGGCA-AATGCGCAAGCCGGGGATC-AGCCTGGTCCCCCTCTGCGTGCTATCGAT
64 CCAGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCGA-CCCGGT--CCC-C--C---CTA-CG-T
* * * * * *
33802840 CCCGTGGCCGATCCTGCTACCACGACCCTCGATCCAG-CTATG
118 -GC-T-GCCGATCCTGCTACCACAACCCTCGGTCCGGTCCA-A
* * * * *
33802882 GC-TAGGACATGGAATGAACTCTGTATGCCTAAGCTAACCCATAAAACAAGCGTA-CGGGCGCTC
1 GCTTA-GACAAGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCG-AGC-GG-GCTC
* * * *** * * * *
33802945 -AGCCGGTCGGAGAGGTAGAATGCGCAAGCCGGGGATCGGTTCGGTCCCTCTTGCGTGCTGTCGA
62 GA-CCAGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGGTCCCCCCTACGTGCTGCCGA
* * *
33803009 TCCTGCTGCCGCAACCCTCGGTCCAGTCCAA
126 TCCTGCTACCACAACCCTCGGTCCGGTCCAA
* ** *
33803040 ACTTAGACTGGGAATGAACTCCATATGC
1 GCTTAGACAAGGAATGAACTCCGTATGC
33803068 TTAGACTGGG
Statistics
Matches: 509, Mismatches: 120, Indels: 84
0.71 0.17 0.12
Matches are distributed among these distances:
154 3 0.01
155 23 0.05
156 90 0.18
157 6 0.01
158 140 0.28
159 117 0.23
160 5 0.01
161 5 0.01
162 2 0.00
163 1 0.00
164 1 0.00
166 3 0.01
167 1 0.00
168 1 0.00
169 7 0.01
170 77 0.15
171 24 0.05
172 3 0.01
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.19
Consensus pattern (156 bp):
GCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGAGCGGGCTCGACC
AGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGGTCCCCCCTACGTGCTGCCGATCCTG
CTACCACAACCCTCGGTCCGGTCCAA
Found at i:33803091 original size:25 final size:26
Alignment explanation
Indices: 33803041--33803092 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
33803031 CCAGTCCAAA
33803041 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
33803067 CTTAGACTGGG-ATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
33803092 C
1 C
33803093 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 14 0.56
26 11 0.44
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:33803705 original size:11 final size:11
Alignment explanation
Indices: 33803673--33803698 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
33803663 CGGTTAGGCT
33803673 CTCCGACGATG
1 CTCCGACGATG
33803684 CTCCGACGATG
1 CTCCGACGATG
33803695 CTCC
1 CTCC
33803699 AGCGATGGTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.15, C:0.42, G:0.23, T:0.19
Consensus pattern (11 bp):
CTCCGACGATG
Found at i:33803813 original size:26 final size:26
Alignment explanation
Indices: 33803775--33803827 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33803765 GCCTCAAAAT
*
33803775 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
33803801 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
33803827 C
1 C
33803828 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:33804133 original size:159 final size:160
Alignment explanation
Indices: 33803800--33804304 Score: 436
Period size: 159 Copynumber: 3.2 Consensus size: 160
33803790 AACTCTGTAT
* *
33803800 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACAGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTACAGGCACTCAA
* * * *
33803865 TCGACCGGAGAGGCAGAATGTGCAAGTCGGGATTCGGCCCGGTCCCCCCCCTACATGCTGTCGAT
66 CCGACCGAAGAGGCAGAATGCGCAAGCCGGGATTCGGCCCGGTCCCCCCCCTACATGCTGTCGAT
*
33803930 CCTGCTGCCACAACCCTCAGTCCGGTCTGA
131 CCTGCTGCAACAACCCTCAGTCCGGTCTGA
* * ** * *** *
33803960 TCTTAGAC-TGGGAATGAACTCCATATGCATAAGTTAACCCAT-ATAATGAGCGTGGGGGCACTG
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCATGA-AACGAGCGTACAGGCACTC
* * * * * * * *
33804023 AGCCGGCCGAAGAGGCATAATGCGCAAGCCAGGGA-TCGGTCTGGT-CCCCCTCTGCGTGCTGTC
64 AACCGACCGAAGAGGCAGAATGCGCAAGCC-GGGATTCGGCCCGGTCCCCCCCCTACATGCTGTC
* * * *
33804086 GGTCCTGCTGCAACAACCCTCGGTCTGG-CTAGG
128 GATCCTGCTGCAACAACCCTCAGTCCGGTCT-GA
* * * * * ** *
33804119 GCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAAACCACGAAACGGGCGTACGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTACAGGCACTCAA
* ** * * * * * * *
33804184 TCGGTCGGAGAGGTAGAATACGCAAGTCGAGGA-TCGGCCCGAT--CCCCCTTACGTGCTGTCGA
66 CCGACCGAAGAGGCAGAATGCGCAAGCCG-GGATTCGGCCCGGTCCCCCCCCTACATGCTGTCGA
* *
33804246 TCCTGCTGTC-GCAACCCTCAGTCCAGTCTGA
130 TCCTGCTG-CAACAACCCTCAGTCCGGTCTGA
*
33804277 TCTTAGAC-TGGGAATGAACTCCATATGC
1 GCTTAGACAT-GGAATGAACTCCATATGC
33804305 TTAGACTGGG
Statistics
Matches: 272, Mismatches: 63, Indels: 22
0.76 0.18 0.06
Matches are distributed among these distances:
157 1 0.00
158 63 0.23
159 123 0.45
160 81 0.30
161 4 0.01
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.20
Consensus pattern (160 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTACAGGCACTCAA
CCGACCGAAGAGGCAGAATGCGCAAGCCGGGATTCGGCCCGGTCCCCCCCCTACATGCTGTCGAT
CCTGCTGCAACAACCCTCAGTCCGGTCTGA
Done.