Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 371 of 402
Found at i:33804307 original size:26 final size:26
Alignment explanation
Indices: 33804278--33804330 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
33804268 CCAGTCTGAT
33804278 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
33804304 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
33804330 C
1 C
33804331 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:33804675 original size:26 final size:26
Alignment explanation
Indices: 33804646--33804698 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
33804636 CCGGTCCGAT
33804646 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
33804672 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
33804698 C
1 C
33804699 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:33811627 original size:152 final size:156
Alignment explanation
Indices: 33811275--33811632 Score: 342
Period size: 159 Copynumber: 2.3 Consensus size: 156
33811265 TGTGGATCTT
* * *
33811275 GCTACTACAACCCTTGGTTCGGTC-GAATCTTAGACTGGGAATGAACTCCCTATACATAAGTCAA
1 GCTACCACAACCC-TCGTTCGGTCTG-ATCTTAGACTGGGAATGAACTCCCTATACATAAGCCAA
* **
33811339 CCCATGAAACGAGCGTACGGGCATTGAGCCGGCCGAAGAGGCATAATCCGCAAGCCGGGGATCGA
64 CCCACGAAACGAGCGTACGGGCATTGAGCCGGCCGAAGAGG-A-AATCCGCAAGCCAAGGATCGA
* *
33811404 CTCGGTCCCCCTTAGCATGCTACCGATCCC
127 CTCGATCCCCCCTAGCATGCTACCGATCCC
* * ** * *
33811434 GCTGCCACAACCCTCGGTCTGG-CTGGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCA
1 GCTACCACAACCCTCGTTC-GGTCT-GATCTTAGAC-TGGGAATGAACTCCCTATACATAAGCCA
* * * * *
33811497 ACCCACGAAATGGGCGTGCCGGTGC-TT-AGCTGGCCG-A-A-G-AATCCGCTAGCCAAGGATCG
63 ACCCACGAAACGAGCGT-ACGG-GCATTGAGCCGGCCGAAGAGGAAATCCGCAAGCCAAGGATCG
* *
33811556 AAC-CGATCCCCCCT-GCGTGCTACCGATCCT
126 -ACTCGATCCCCCCTAGCATGCTACCGATCCC
*
33811586 GCTACCGCAACCCTCGATTCGGTCTGATCTTAGACTGGGAATGAACT
1 GCTACCACAACCCTCG-TTCGGTCTGATCTTAGACTGGGAATGAACT
33811633 TCGTATGCTT
Statistics
Matches: 163, Mismatches: 26, Indels: 27
0.75 0.12 0.12
Matches are distributed among these distances:
151 1 0.01
152 48 0.29
153 30 0.18
154 2 0.01
156 1 0.01
157 1 0.01
158 6 0.04
159 65 0.40
160 7 0.04
161 2 0.01
ACGTcount: A:0.24, C:0.31, G:0.25, T:0.20
Consensus pattern (156 bp):
GCTACCACAACCCTCGTTCGGTCTGATCTTAGACTGGGAATGAACTCCCTATACATAAGCCAACC
CACGAAACGAGCGTACGGGCATTGAGCCGGCCGAAGAGGAAATCCGCAAGCCAAGGATCGACTCG
ATCCCCCCTAGCATGCTACCGATCCC
Found at i:33811643 original size:26 final size:26
Alignment explanation
Indices: 33811614--33811666 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
33811604 TCGGTCTGAT
33811614 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
* *
33811640 CTTAGACTGGGGATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
33811666 C
1 C
33811667 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:33812861 original size:26 final size:26
Alignment explanation
Indices: 33812832--33812884 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
33812822 CCGGTCCGAT
33812832 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
33812858 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
33812884 C
1 C
33812885 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:33813236 original size:26 final size:26
Alignment explanation
Indices: 33813200--33813252 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
33813190 CCAGTCTGAT
33813200 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
33813226 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
33813252 C
1 C
33813253 CTAAATGAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:33814290 original size:25 final size:26
Alignment explanation
Indices: 33814240--33814291 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
33814230 CTGATCCGAT
**
33814240 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
33814266 CTTAGATTGGG-ATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
33814291 C
1 C
33814292 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 13 0.57
26 10 0.43
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:33814302 original size:197 final size:197
Alignment explanation
Indices: 33813955--33814342 Score: 507
Period size: 197 Copynumber: 2.0 Consensus size: 197
33813945 CAGCCGATCA
* * *
33813955 GAGAGGCAGAATGCACAAGTCGAGGATCGGCCCAGTCCCCCCTGCGTGCTGTCGATCCTGCTATC
1 GAGAGGCAAAATGCACAAGCCGAGGATCGACCCAGTCCCCCCTGCGTGCTGTCGATCCTGCTATC
* * *
33814020 GCAACCCTCGATCCGGTCTAATCTTAGATTGGGAATGAACTCCATATGATTAGACTAGGGATGAA
66 GCAACCCTCGATCCGATCCAATCTTAGACTGGGAATGAACTCCATATGATTAGACTAGGGATGAA
** * * * *
33814085 CTCTGTATGCCTAAGTCAACCTACGAAACGAGCGTGCGGGCAGTCAGCCGACCGGAGAGGCCGGT
131 CTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCAACCAGAGAGGCCGGT
33814150 AG
196 AG
* *
33814152 GAGAGGCAAAATGCACAAGCCGGGGATC-ACCTC-GATCCCCCTCTGCGTGCTG-CTGATCCTTC
1 GAGAGGCAAAATGCACAAGCCGAGGATCGACC-CAG-TCCCCC-CTGCGTGCTGTC-GATCCTGC
* * ** * *
33814214 T-TCCGCAACCCTCGATCTGATCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGA-TTGGG
62 TAT-CGCAACCCTCGATCCGATCCAATCTTAGACTGGGAATGAACTCCATATGATTAGACTAGGG
*
33814277 ATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCACTCAGCCAACCAGAGAGG
126 ATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCAACCAGAGAGG
33814342 C
191 C
33814343 AGGATACACA
Statistics
Matches: 165, Mismatches: 21, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
196 3 0.02
197 97 0.59
198 65 0.39
ACGTcount: A:0.25, C:0.28, G:0.27, T:0.20
Consensus pattern (197 bp):
GAGAGGCAAAATGCACAAGCCGAGGATCGACCCAGTCCCCCCTGCGTGCTGTCGATCCTGCTATC
GCAACCCTCGATCCGATCCAATCTTAGACTGGGAATGAACTCCATATGATTAGACTAGGGATGAA
CTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCAACCAGAGAGGCCGGT
AG
Found at i:33815321 original size:26 final size:26
Alignment explanation
Indices: 33815292--33815344 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33815282 CCAGTTCGAT
*
33815292 CTTAGAC-TGGGAATGAACTTCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
33815318 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
33815344 C
1 C
33815345 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:33815675 original size:26 final size:26
Alignment explanation
Indices: 33815646--33815698 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33815636 CTGGTTCGAT
*
33815646 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
33815672 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
33815698 C
1 C
33815699 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:33815848 original size:197 final size:197
Alignment explanation
Indices: 33815591--33815958 Score: 515
Period size: 197 Copynumber: 1.9 Consensus size: 197
33815581 GTCCCCCTTA
** ** *
33815591 CGTGCTGTCGATCCTACTACTGGTCCTACCGTCGGGACCCTCGGTCTGGTTCGATCTTAGACTGG
1 CGTGCTGTCGATCCTACTACTGGTCCTACCACCGCAACCCTCGGTCGGGTTCGATCTTAGACTGG
*
33815656 GAATGAACTCTGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAG
66 GAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAA-
*
33815721 T-GTGCGGGCACTCAGCCGGCCGAAAAGGCAGAATGCGCAAGCTGGGGATCGGCCTAGTCCTCCC
130 TCGTGCGGGCACTCAGCCGACCGAAAAGGCAGAATGCGCAAGCTGGGGATCGGCCTAGTCCTCCC
33815785 CTG
195 CTG
* * * * *
33815788 CGTGCTGTCGATCCTACTGCTGGTCCTGCTACCGCAACCCTTGGTCGGG-TCTGATCTTAGATTG
1 CGTGCTGTCGATCCTACTACTGGTCCTACCACCGCAACCCTCGGTCGGGTTC-GATCTTAGACTG
* * *
33815852 GGAATGAACTCCGTATGCTTAGACATGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGA
65 GGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAA
* * * * * *
33815917 TCGTGCGGGCGCTGAGCTGATCGGAGAGGCAGAATGCGCAAG
130 TCGTGCGGGCACTCAGCCGACCGAAAAGGCAGAATGCGCAAG
33815959 TCGGAGAGGC
Statistics
Matches: 148, Mismatches: 21, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
196 3 0.02
197 145 0.98
ACGTcount: A:0.23, C:0.27, G:0.28, T:0.22
Consensus pattern (197 bp):
CGTGCTGTCGATCCTACTACTGGTCCTACCACCGCAACCCTCGGTCGGGTTCGATCTTAGACTGG
GAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAT
CGTGCGGGCACTCAGCCGACCGAAAAGGCAGAATGCGCAAGCTGGGGATCGGCCTAGTCCTCCCC
TG
Found at i:33815965 original size:22 final size:22
Alignment explanation
Indices: 33815937--33815980 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
33815927 GCTGAGCTGA
33815937 TCGGAGAGGCAGAATGCGCAAG
1 TCGGAGAGGCAGAATGCGCAAG
*
33815959 TCGGAGAGGCATAATGCGCAAG
1 TCGGAGAGGCAGAATGCGCAAG
33815981 CCGAGGATCG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.32, C:0.18, G:0.39, T:0.11
Consensus pattern (22 bp):
TCGGAGAGGCAGAATGCGCAAG
Found at i:33816403 original size:26 final size:26
Alignment explanation
Indices: 33816367--33816419 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
33816357 CTGATCTGAT
*
33816367 CTTAGACTGGGAATCAATTCCGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
* *
33816393 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
33816419 C
1 C
33816420 GTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCGTATG
Found at i:33817128 original size:26 final size:26
Alignment explanation
Indices: 33817089--33817140 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
33817079 TGGCTGAAAA
*
33817089 TCTTAGACTGGGAAAGAACTGCGTAT
1 TCTTAGACTGGGAAAGAACTCCGTAT
*
33817115 TCTTAGACAT-GGAATGAACTCCGTAT
1 TCTTAGAC-TGGGAAAGAACTCCGTAT
33817141 GCCTAAGCCA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.29
Consensus pattern (26 bp):
TCTTAGACTGGGAAAGAACTCCGTAT
Found at i:33817871 original size:171 final size:167
Alignment explanation
Indices: 33817517--33817906 Score: 412
Period size: 171 Copynumber: 2.3 Consensus size: 167
33817507 GCCAATCCTG
* * * *
33817517 CTGCCGCAACCTTCGATCCGATTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
1 CTGCCGCAACCCTCGATCCGACTCGAGCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* ** * *
33817582 CACGAAATGAGCGTGCGGGAGCTCAACCGACTGGAGAGGCATAATGCACAAGCCAGGGATCAACC
66 CACAAAATGAGCGTGCGGGAGCTCAACCGACCAGAGAGGCAGAATACACAAGCCAGGGATCAACC
* * * *
33817647 CGATCCCCCTCTGCGTGCTGCCGATCCCGCTGTCGAT
131 CGATCCCCCCCTACGTGCTACCGATCCCACTGTCGAT
* *
33817684 CTTGCTACGACAACCCTCGATCCGACTGGGGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGC
1 C-TGC--CG-CAACCCTCGATCCGACTCGAGCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGC
* * * * * * *
33817748 CAACCCACAAAATGAGCGTGCGGGTGCTCAGCTGACCAGAGCGGTAGAATACGCAAGTC-GAGGA
61 CAACCCACAAAATGAGCGTGCGGGAGCTCAACCGACCAGAGAGGCAGAATACACAAGCCAG-GGA
33817812 TCAACCC-AGTCCCCCCCTACGTGCTACCGATCCTACTACTAGTTCGA-
125 TCAACCCGA-TCCCCCCCTACGTGCTACCGATCC--C-ACT-G-TCGAT
* *
33817859 CTGCCGCAACCCTCGATCCG-GTCCGATCTTAGACTGGGAATGAACTCC
1 CTGCCGCAACCCTCGATCCGACT-CGAGCTTAGACTGGGAATGAACTCC
33817907 ATTTGCTTAG
Statistics
Matches: 183, Mismatches: 26, Indels: 24
0.79 0.11 0.10
Matches are distributed among these distances:
167 1 0.01
168 3 0.02
170 6 0.03
171 158 0.86
172 3 0.02
173 1 0.01
174 5 0.03
175 2 0.01
176 4 0.02
ACGTcount: A:0.25, C:0.32, G:0.24, T:0.19
Consensus pattern (167 bp):
CTGCCGCAACCCTCGATCCGACTCGAGCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
CACAAAATGAGCGTGCGGGAGCTCAACCGACCAGAGAGGCAGAATACACAAGCCAGGGATCAACC
CGATCCCCCCCTACGTGCTACCGATCCCACTGTCGAT
Found at i:33818788 original size:26 final size:26
Alignment explanation
Indices: 33818759--33818811 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
33818749 CCGGTCTGAT
33818759 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
33818785 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
33818811 C
1 C
33818812 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:33820312 original size:159 final size:157
Alignment explanation
Indices: 33820020--33820513 Score: 503
Period size: 159 Copynumber: 3.1 Consensus size: 157
33820010 GTTTAGAGAT
** * * * *
33820020 GGAATGAACTCCGTATGCCTAAGCCAACAAATGAAACGAGCGTGCGGGCGCTAAGCCGGTTGGGG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTAAGCCGATCGGAG
* *
33820085 AGGCAAAATGCGCAAGCCGAGGATCGGCCCAGTCCTCCCCTGTGTGCTATCAATCCTGCTGTCGC
66 AGGCAAAATGCGCAAGCCGGGGATCGGCCCAGTCC-CCCCTGTGTGCTATCGATCCTGCTGTCGC
33820150 AACCCTCAGTCCGGTTCGATCTTAGACTA
130 AACCCTCAGTCCGG-TCGATCTTAGACTA
* * * * * * *
33820179 GGAATGAACTCCGTATACGTAAGTCAACCCACAAAACGAGCGTTCGGGCGCTGAGCCGATCGAAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTAAGCCGATCGGAG
* * * * ** * *
33820244 AGGCATAATGCGCAAGCTGGGGATCGACCCAGTCCCCCTCTGTGTGCTATCGGTCCCACTGCCAC
66 AGGCAAAATGCGCAAGCCGGGGATCGGCCCAGTCCCCC-CTGTGTGCTATCGATCCTGCTGTCGC
* * *
33820309 AACCC-CTGGTCC-GACTGCAGCTTAGAC-A
130 AACCCTC-AGTCCGGTC-G-ATCTTAGACTA
* * * * *
33820337 TGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAATG-GACATGCGGGCGCTCAGCTC-ACCG
1 -GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAG-CGTGCGGGCGCTAAGC-CGATCG
* * ** * **
33820400 GAGAGGCAGAATGCACAAGCCGGGGATCGGCCTGGTCCCCCCTGCGTGCTGCCGATCCTGCTGTC
63 GAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCAGTCCCCCCTGTGTGCTATCGATCCTGCTGTC
* *
33820465 GCAACCCTCAGTCCGGTCTGATCTTAGGCTG
128 GCAACCCTCAGTCCGGTC-GATCTTAGACTA
33820496 GGAATGAACTCCGTATGC
1 GGAATGAACTCCGTATGC
33820514 TTAGTTTAGG
Statistics
Matches: 268, Mismatches: 57, Indels: 21
0.77 0.16 0.06
Matches are distributed among these distances:
157 1 0.00
158 59 0.22
159 207 0.77
160 1 0.00
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (157 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTAAGCCGATCGGAG
AGGCAAAATGCGCAAGCCGGGGATCGGCCCAGTCCCCCCTGTGTGCTATCGATCCTGCTGTCGCA
ACCCTCAGTCCGGTCGATCTTAGACTA
Found at i:33820516 original size:26 final size:26
Alignment explanation
Indices: 33820487--33820539 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
33820477 CCGGTCTGAT
33820487 CTTAGGCT-GGGAATGAACTCCGTATG
1 CTTAGGCTAGGG-ATGAACTCCGTATG
**
33820513 CTTAGTTTAGGGATGAACTCCGTATG
1 CTTAGGCTAGGGATGAACTCCGTATG
33820539 C
1 C
33820540 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGGCTAGGGATGAACTCCGTATG
Found at i:33821369 original size:26 final size:26
Alignment explanation
Indices: 33821340--33821392 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33821330 CTGGTCCGAT
*
33821340 CTTAGACTG-GGAATGAACTCTGTATG
1 CTTAGACTGAGG-ATGAACTCCGTATG
33821366 CTTAGACTGAGGATGAACTCCGTATG
1 CTTAGACTGAGGATGAACTCCGTATG
33821392 C
1 C
33821393 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGGATGAACTCCGTATG
Found at i:33822575 original size:26 final size:26
Alignment explanation
Indices: 33822537--33822589 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33822527 CCGATTTGAT
*
33822537 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
33822563 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
33822589 C
1 C
33822590 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:33822923 original size:159 final size:156
Alignment explanation
Indices: 33822562--33823064 Score: 431
Period size: 158 Copynumber: 3.2 Consensus size: 156
33822552 AACTTCGTAT
* **
33822562 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
1 GCTTAGAC-TGGAATGAACTCCGTATGCCTAAACCAA-CCATGAAACAAGCGTGCGGGCGCTCAG
* * * * * ***
33822627 -TCGGTCGGAAAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCC-CTGTGTGCTATTAAT
64 CT-GGCCGGAGAGGCAGAATACGCAAGTCGGGGATCGG-CCGGTCCCCCTCTACATGCTATTAAT
* *
33822690 CCTGCTGCCACAACTCTTGGTCCGATCTGA
127 CCCGCTGCCACAACGCTTGGTCCGATCTGA
* * * * * * * *
33822720 TCTTAGACTGGAAATGAACTCTGTCTGCCTAAGTCAAACCATGAAACAAGCGTACGGGCGTTGAG
1 GCTTAGACTGG-AATGAACTCCGTATGCCTAA-ACCAACCATGAAACAAGCGTGCGGGCGCTCAG
* * * **
33822785 CTGGCCGGAGAGGCATAATACGCAAGTCGGGGATCGACTCGGTCCCCCTCTACATGCTGTTGGTC
64 CTGGCCGGAGAGGCAGAATACGCAAGTCGGGGATCGGC-CGGTCCCCCTCTACATGCTATTAATC
* *
33822850 CCGCTGCCACAACGCTTGGTCCGGT-TGGG
128 CCGCTGCCACAACGCTTGGTCCGATCT-GA
* * * * *
33822879 GCTTAGACGTGGAGTGAACTCCCTATGCCTAAACCAACCTATGAAACAAGTGTGCGGGTGCTCAA
1 GCTTAGAC-TGGAATGAACTCCGTATGCCTAAACCAACC-ATGAAACAAGCGTGCGGGCGCTCAG
* * * **
33822944 CCGGCCGAAGAGGCAGAATACGCAAGTCGAGGATCGGCCTGGT-CCCCTCTACATGCTATCGATC
64 CTGGCCGGAGAGGCAGAATACGCAAGTCGGGGATCGGCC-GGTCCCCCTCTACATGCTATTAATC
** * * * * *
33823008 CTACTACCGCAACCCTCGTTTCCG-TCTGA
128 CCGCTGCCACAACGCTTG-GTCCGATCTGA
* *
33823037 TCTTAGACTGGGAATGAACTCTGTATGC
1 GCTTAGACT-GGAATGAACTCCGTATGC
33823065 TTAGACTGGG
Statistics
Matches: 273, Mismatches: 60, Indels: 24
0.76 0.17 0.07
Matches are distributed among these distances:
157 5 0.02
158 145 0.53
159 120 0.44
160 3 0.01
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.22
Consensus pattern (156 bp):
GCTTAGACTGGAATGAACTCCGTATGCCTAAACCAACCATGAAACAAGCGTGCGGGCGCTCAGCT
GGCCGGAGAGGCAGAATACGCAAGTCGGGGATCGGCCGGTCCCCCTCTACATGCTATTAATCCCG
CTGCCACAACGCTTGGTCCGATCTGA
Found at i:33823089 original size:26 final size:26
Alignment explanation
Indices: 33823038--33823090 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
33823028 TCCGTCTGAT
*
33823038 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTATATG
*
33823064 CTTAGACTGGGGATGAACT-TCATATG
1 CTTAGACTGGGAATGAACTCT-ATATG
33823090 C
1 C
33823091 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTATATG
Found at i:33823734 original size:184 final size:184
Alignment explanation
Indices: 33823397--33823735 Score: 434
Period size: 184 Copynumber: 1.8 Consensus size: 184
33823387 CTGCTATCAC
* * *
33823397 AACCCTCGGTCTAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCATAGACATGGAATGAACT
1 AACCCTCGATCCAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCATAGACATGGAATGAACT
* * * * *
33823462 CTGTATGCCTAAGCCAACCCACGAAACGAGCCTGCGGACGCTCAGTCGGTCGGAGAGGCTGAATG
66 CTGTATGCCTAAGCCAACCCACGAAACGAGCCTGCGGACACTCAGCCAGTCGAAGAGGCTGAATA
*
33823527 CATAAGGTGGGGATCGACCCGATCCCCCTTACGTGAGATCGATCCTGCTACCGT
131 CATAAGGTAGGGATCGACCCGATCCCCCTTACGTGAGATCGATCCTGCTACCGT
* * *
33823581 AACCCTCGATCCAGTTCAATCTTAGACTGGGAATGAACTCCTTATGCTTAGAC-TGGGAATGAAC
1 AACCCTCGATCCAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCATAGACAT-GGAATGAAC
* * * * * * *
33823645 TCTGTATGCCTAAGTCAACCCACGAATCGAGCGTGCGGGCATTGAGCCAGTTGAAGAGGCAT-AA
65 TCTGTATGCCTAAGCCAACCCACGAAACGAGCCTGCGGACACTCAGCCAGTCGAAGAGGC-TGAA
*
33823709 TACGTAA-GTCAGGGATC-AGCCCGATCC
129 TACATAAGGT-AGGGATCGA-CCCGATCC
33823736 TCCTCTGCAT
Statistics
Matches: 131, Mismatches: 20, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
183 4 0.03
184 126 0.96
185 1 0.01
ACGTcount: A:0.27, C:0.26, G:0.26, T:0.22
Consensus pattern (184 bp):
AACCCTCGATCCAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCATAGACATGGAATGAACT
CTGTATGCCTAAGCCAACCCACGAAACGAGCCTGCGGACACTCAGCCAGTCGAAGAGGCTGAATA
CATAAGGTAGGGATCGACCCGATCCCCCTTACGTGAGATCGATCCTGCTACCGT
Found at i:33823980 original size:26 final size:26
Alignment explanation
Indices: 33823944--33823996 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
33823934 CTGGTCTAAT
*
33823944 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
*
33823970 CTTAGAATGGGGATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
33823996 C
1 C
33823997 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Found at i:33824360 original size:26 final size:26
Alignment explanation
Indices: 33824322--33824392 Score: 117
Period size: 26 Copynumber: 2.7 Consensus size: 26
33824312 CTGGTTTGAT
33824322 CTTAGAC-TGGGAATGAACTTCGTATG
1 CTTAGACAT-GGAATGAACTTCGTATG
33824348 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGACATGGAATGAACTTCGTATG
*
33824374 CTTAGACATGTAATGAACT
1 CTTAGACATGGAATGAACT
33824393 CCGTGCTGCC
Statistics
Matches: 43, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
26 42 0.98
27 1 0.02
ACGTcount: A:0.31, C:0.15, G:0.23, T:0.31
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTTCGTATG
Found at i:33824640 original size:285 final size:284
Alignment explanation
Indices: 33824112--33824651 Score: 747
Period size: 285 Copynumber: 1.9 Consensus size: 284
33824102 CTGTCGATCC
** * * ** * *
33824112 TGCTGCCGGTCCTGCTGCTAGAACCCTCGGCCCGGTTGGGGCTTAGGCATGGAATGAACTCCGTA
1 TGCTGCCGGTCCCACTGCCACAACCCTCGGCCCGACTGGGGCTTAGACATGGAATGAACTCCCTA
* * *
33824177 TGCCTAAGCAAACCCATGAAACAAGTGTGCGGGCGCTCAGTCGGTCGAGAGGCAAAATGCACAAG
66 TGCCTAAGCAAACCCATGAAACAAGAGTGCAGGCACTCAGTCGGTCGAGAGGCAAAATGCACAAG
* *
33824242 TCGGGGATTGGCCCGATCCCCCCTGCGTGCTACCGATCCTACTGCTGGTCCTGCTACCACAACCT
131 TCGGGGATCGGCCCGATCCCCCCTGCGTGCTACCGATCCTACTGCTGGTCCTGCTACCACAACCC
** *** * *
33824307 TTTGTCTGGTTTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACATGGAATGAACTTCGTA
196 TCGGTCTGGTCCAATCTTAAACTGGGAATGAACTACGTATGCTTAGACATGGAATGAACTTCGTA
33824372 TGCTTAGACATGTAATGAACTCCG
261 TGCTTAGACATGTAATGAACTCCG
**
33824396 TGCTGCCGGTCCCACTGCCACAACCCTCGGTTCGACTGGGGCTTAGACATGGAATGAACTCCCTA
1 TGCTGCCGGTCCCACTGCCACAACCCTCGGCCCGACTGGGGCTTAGACATGGAATGAACTCCCTA
* * * *
33824461 TGCCTAAGCCAACCCATGAAACAGGAGTGCAGGCACTCAGTCGGTCGAAGAGGCAGAATGCGCAA
66 TGCCTAAGCAAACCCATGAAACAAGAGTGCAGGCACTCAGTCGGTCG-AGAGGCAAAATGCACAA
* * ** ** * ** *
33824526 GTCGGGGATCGGCTCGGTCCCCTTTGCGTGCTGTCGATCCTATTGCTGGTCCTGCTGTCGCAACC
130 GTCGGGGATCGGCCCGATCCCCCCTGCGTGCTACCGATCCTACTGCTGGTCCTGCTACCACAACC
33824591 CTCGGTCTGGTCCAATCTTAAACTGGGAATGAACTACGTATGCTTAGACATGGAATGAACT
195 CTCGGTCTGGTCCAATCTTAAACTGGGAATGAACTACGTATGCTTAGACATGGAATGAACT
33824652 CTATATGCCT
Statistics
Matches: 219, Mismatches: 36, Indels: 1
0.86 0.14 0.00
Matches are distributed among these distances:
284 97 0.44
285 122 0.56
ACGTcount: A:0.22, C:0.27, G:0.27, T:0.24
Consensus pattern (284 bp):
TGCTGCCGGTCCCACTGCCACAACCCTCGGCCCGACTGGGGCTTAGACATGGAATGAACTCCCTA
TGCCTAAGCAAACCCATGAAACAAGAGTGCAGGCACTCAGTCGGTCGAGAGGCAAAATGCACAAG
TCGGGGATCGGCCCGATCCCCCCTGCGTGCTACCGATCCTACTGCTGGTCCTGCTACCACAACCC
TCGGTCTGGTCCAATCTTAAACTGGGAATGAACTACGTATGCTTAGACATGGAATGAACTTCGTA
TGCTTAGACATGTAATGAACTCCG
Found at i:33825521 original size:26 final size:26
Alignment explanation
Indices: 33825485--33825534 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
33825475 TCAAAATCTC
*
33825485 AGACTGGGAATGAACTCCGTATGCTT
1 AGACTGGGAATGAACTCCATATGCTT
*
33825511 AGACTTGGAATGAACTCCATATGC
1 AGACTGGGAATGAACTCCATATGC
33825535 CTAAGCCAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (26 bp):
AGACTGGGAATGAACTCCATATGCTT
Found at i:33825854 original size:26 final size:26
Alignment explanation
Indices: 33825825--33825877 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
33825815 TCGGTCTGAT
33825825 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
* *
33825851 CTTAGATTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
33825877 C
1 C
33825878 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:33826181 original size:26 final size:26
Alignment explanation
Indices: 33826152--33826204 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33826142 CTAATCCGAT
33826152 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
33826178 CTTAGACATGGAATGGACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
33826204 C
1 C
33826205 CTAAGGCAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:33826681 original size:26 final size:26
Alignment explanation
Indices: 33826652--33826703 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
33826642 CCGATCAGAT
*
33826652 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCAGTATG
*
33826678 CTTAGACTGGGGATGAACTCAGTATG
1 CTTAGACTGGGAATGAACTCAGTATG
33826704 TCTAAGTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCAGTATG
Found at i:33828370 original size:132 final size:132
Alignment explanation
Indices: 33828135--33828399 Score: 476
Period size: 132 Copynumber: 2.0 Consensus size: 132
33828125 GACATGTTCA
**
33828135 CCCAAAAGAATAAGACCTTGGAGGCTGAAGTGCTGACCTTGCGTGATGGCATGGAGGCCATGCAC
1 CCCAAAAGAATAAGACCTTGGAGGCTGAAGTGCTGACCTTGCACGATGGCATGGAGGCCATGCAC
* *
33828200 CAGCGGATGGAGGAGCTTACCAGTGAGCTCGTTGCTTGCAAGACTGCCATTGGGAATGGCATGTT
66 CAGCGGATGGAGGAGCTTACCAGTGAGCTCATTACTTGCAAGACTGCCATTGGGAATGGCATGTT
33828265 TG
131 TG
*
33828267 CCCAAAAGAATCAGACCTTGGAGGCTGAAGTGCTGACCTTGCACGATGGCATGGAGGCCATGCAC
1 CCCAAAAGAATAAGACCTTGGAGGCTGAAGTGCTGACCTTGCACGATGGCATGGAGGCCATGCAC
*
33828332 CAGCGGATGGAGGAGCTTTCCAGTGAGCTCATTACTTGCAAGACTGCCATTGGGAATGGCATGTT
66 CAGCGGATGGAGGAGCTTACCAGTGAGCTCATTACTTGCAAGACTGCCATTGGGAATGGCATGTT
33828397 TG
131 TG
33828399 C
1 C
33828400 TGGAGTGTCC
Statistics
Matches: 127, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
132 127 1.00
ACGTcount: A:0.25, C:0.22, G:0.31, T:0.22
Consensus pattern (132 bp):
CCCAAAAGAATAAGACCTTGGAGGCTGAAGTGCTGACCTTGCACGATGGCATGGAGGCCATGCAC
CAGCGGATGGAGGAGCTTACCAGTGAGCTCATTACTTGCAAGACTGCCATTGGGAATGGCATGTT
TG
Found at i:33833453 original size:26 final size:26
Alignment explanation
Indices: 33833415--33833467 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
33833405 GGCTCAAAAT
*
33833415 CTTAGACTGGGAATGCACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
33833441 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
33833467 C
1 C
33833468 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:33833736 original size:159 final size:157
Alignment explanation
Indices: 33833440--33834040 Score: 550
Period size: 159 Copynumber: 3.8 Consensus size: 157
33833430 CACTCCATAT
* * *
33833440 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAG-CAACCCACGAAACGAGCGTGCGGGCGCTAAG
* * * * * * * *
33833505 CCTGCC-GGAGAGGCAGAATGCACAAGTTGGGGATCGACCCGGTCCCCCCCTGCGTGCTGTCGAT
65 CCAGCCAAG-GAGGCATAATGCACAAGTCGGGGATAGA-TCGGTCCCCCTCTGCGTGCTGTCGGT
** *
33833569 CCTGCTGCCGCAACCCTCGGTCCAATCT-GA
128 CCCACTGCCACAACCCTCGGTCCAA-CTGGA
* * ** * *
33833599 TCTTAGAC-TGGGAATGAACTCTGTATGAATAAGTCAACCCACGAAACAAGCGTGCGGGTGCTAA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAG-CAACCCACGAAACGAGCGTGCGGGCGCTAA
** * * * *
33833663 GCCAGCCAAGGAGGCATAATGCACAAGTCGAAGATTGGTCGGGTCCCCCTCTGTGTGCTATCGGT
64 GCCAGCCAAGGAGGCATAATGCACAAGTCGGGGATAGATC-GGTCCCCCTCTGCGTGCTGTCGGT
* * *
33833728 CCCACTGCCACAACCCTCGGTTCGACTGGG
128 CCCACTGCCACAACCCTCGGTCCAACTGGA
* * * *
33833758 GCTTAGACATGGAATGCACTCCCTATGCCTAAGCTAACCCACGAAACGGGCGTGCGGGCACTAAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGC-AACCCACGAAACGAGCGTGCGGGCGCTAAG
* * * * *
33833823 CCGGCCGAA-GAGGCATAATGCGCAAGTCGGGGATCAGCTCAGTCCCCCTCTACGTGCTGTCGGT
65 CCAGCC-AAGGAGGCATAATGCACAAGTCGGGGAT-AGATCGGTCCCCCTCTGCGTGCTGTCGGT
* * *
33833887 CCCACTGCCACAACCCTCGATCCGACTGGG
128 CCCACTGCCACAACCCTCGGTCCAACTGGA
* * * * *
33833917 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGAGCATGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAG-CAACCCACGAAACGAGCGTGCGGGCGCTAAG
* * * * * * *
33833982 CCGGCC-GGAGAGGTAGAATGCGCAAGTCGGGGATCA-ACCCGGTCCCCC-CTGCATGCTGT
65 CCAGCCAAG-GAGGCATAATGCACAAGTCGGGGAT-AGA-TCGGTCCCCCTCTGCGTGCTGT
33834041 TGATCCTGCT
Statistics
Matches: 364, Mismatches: 66, Indels: 25
0.80 0.15 0.05
Matches are distributed among these distances:
158 14 0.04
159 342 0.94
160 8 0.02
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.18
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCAACCCACGAAACGAGCGTGCGGGCGCTAAGC
CAGCCAAGGAGGCATAATGCACAAGTCGGGGATAGATCGGTCCCCCTCTGCGTGCTGTCGGTCCC
ACTGCCACAACCCTCGGTCCAACTGGA
Found at i:33834028 original size:318 final size:318
Alignment explanation
Indices: 33833440--33834029 Score: 684
Period size: 318 Copynumber: 1.9 Consensus size: 318
33833430 CACTCCATAT
* * * *
33833440 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTAAG
* * * * *
33833505 CCTGCCGGAGAGGCAGAATGCACAAGTTGGGGATCGACCCGGTCCCCCCCTGCGTGCTGTCGATC
66 CCGGCCGAAGAGGCAGAATGCACAAGTCGGGGATCGACCCAGTCCCCCCCTACGTGCTGTCGATC
** * * * ** *
33833570 CTGCTGCCGCAACCCTCGGTCCAATCTGATCTTAGACTGGGAATGAACTCTGTATGAATAAGTCA
131 CCACTGCCACAACCCTCGATCCAATCTGAGCTTAGACTGGGAATGAACTCCCTATGAATAAGCCA
* * * **
33833635 ACCCACGAAACAAGCGTGCGGGTGCTAAGCCAGCCAAGGAGGCATAATGCACAAGTCGAAGATTG
196 ACCCACGAAACAAGCATGCGGGCGCTAAGCCAGCCAAGGAGGCAGAATGCACAAGTCGAAGATCA
** *
33833700 GTCGGGTCCCCCTCTGTGTGCTATCGGTCCCACTGCCACAACCCTCGGTTCGACTGGG
261 ACCCGGTCCCCCTCTGTGTGCTATCGGTCCCACTGCCACAACCCTCGGTTCGACTGGG
* * * *
33833758 GCTTAGACATGGAATGCACTCCCTATGCCTAAGCTAACCCACGAAACGGGCGTGCGGGCACTAAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTAAG
* * * * *
33833823 CCGGCCGAAGAGGCATAATGCGCAAGTCGGGGATC-AGCTCAGTCCCCCTCTACGTGCTGTCGGT
66 CCGGCCGAAGAGGCAGAATGCACAAGTCGGGGATCGA-CCCAGTCCCCCCCTACGTGCTGTCGAT
* * **
33833887 CCCACTGCCACAACCCTCGATCCGA-CTGGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAG
130 CCCACTGCCACAACCCTCGATCCAATCT-GAGCTTAGAC-TGGGAATGAACTCCCTATGAATAAG
* ** * * * * * **
33833950 CCAACCCATGAAATGAGCATGCGGGCGCTCAGCCGGCC-GGAGAGGTAGAATGCGCAAGTCGGGG
193 CCAACCCACGAAACAAGCATGCGGGCGCTAAGCCAGCCAAG-GAGGCAGAATGCACAAGTCGAAG
33834014 ATCAACCCGGTCCCCC
257 ATCAACCCGGTCCCCC
33834030 CTGCATGCTG
Statistics
Matches: 220, Mismatches: 48, Indels: 8
0.80 0.17 0.03
Matches are distributed among these distances:
317 4 0.02
318 215 0.98
319 1 0.00
ACGTcount: A:0.24, C:0.31, G:0.28, T:0.18
Consensus pattern (318 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTAAG
CCGGCCGAAGAGGCAGAATGCACAAGTCGGGGATCGACCCAGTCCCCCCCTACGTGCTGTCGATC
CCACTGCCACAACCCTCGATCCAATCTGAGCTTAGACTGGGAATGAACTCCCTATGAATAAGCCA
ACCCACGAAACAAGCATGCGGGCGCTAAGCCAGCCAAGGAGGCAGAATGCACAAGTCGAAGATCA
ACCCGGTCCCCCTCTGTGTGCTATCGGTCCCACTGCCACAACCCTCGGTTCGACTGGG
Found at i:33834117 original size:26 final size:26
Alignment explanation
Indices: 33834076--33834126 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
33834066 CCGGTCTGAT
*
33834076 CTTAGACTGAGAATGAACTTCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
* *
33834102 CTTAGACTGGGGATGAACTCCGTAT
1 CTTAGACTGAGAATGAACTCCGTAT
33834127 ACCTAAGTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:33835007 original size:26 final size:26
Alignment explanation
Indices: 33834970--33835019 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
33834960 CAGTTCAATT
33834970 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
33834996 TTAGACAT-GGAATGAACTCCGTAT
1 TTAGAC-TGGGAATGAACTCCGTAT
33835020 CCCTAAGCCA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:33835132 original size:184 final size:184
Alignment explanation
Indices: 33834810--33835181 Score: 451
Period size: 184 Copynumber: 2.0 Consensus size: 184
33834800 TCCGGTTGGG
* * * * * * *
33834810 GCTTAGACATGGAATGAACTCCGTATGCCTAGGTCAACCCATGAAATGAGCGTGTGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATCCCTAAGCCAACCCATAAAACGAGCGTGCGAGCACTCAG
* * * * * ** * *
33834875 CCGACTGGAGAGGTAGAATGCACAAGCAGGGGCTCGATCCGGTTTCCCCTACGTGTTGTCGATCC
66 CCGACTGGAGAGGCAGAATGCACAAGCAGGGACCCGACCCGATCCCCCCTACGTGCTGTCAATCC
* * * *
33834940 TACTGCTGCAACCTTTGGTTCAGT-TCAATTTTAGACTGGGAATGAACTCCGTAT
131 TACTGCTGCAACCTTCGGTTCGGTCT-AATCTTAGACTAGGAATGAACTCCGTAT
*
33834994 GCTTAGACATGGAATGAACTCCGTATCCCTAAGCCAACCCATAAAACGAGCGTGCGAGCTCTCAG
1 GCTTAGACATGGAATGAACTCCGTATCCCTAAGCCAACCCATAAAACGAGCGTGCGAGCACTCAG
* * * *
33835059 TCGGCTGGAGAGGCAGAATGCGCAAGCCAGGGACCCG-CCCGATCCCCCCTGCGTGCTGTCAATC
66 CCGACTGGAGAGGCAGAATGCACAAG-CAGGGACCCGACCCGATCCCCCCTACGTGCTGTCAATC
* * * *
33835123 TTGCTGCTGCAACCTTCGGTTCGGTCTGATCTTAGACTAGGAATGAACTCTGTAT
130 CTACTGCTGCAACCTTCGGTTCGGTCTAATCTTAGACTAGGAATGAACTCCGTAT
33835178 GCTT
1 GCTT
33835182 TAGTCAACCA
Statistics
Matches: 157, Mismatches: 29, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
184 148 0.94
185 9 0.06
ACGTcount: A:0.23, C:0.27, G:0.26, T:0.24
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCGTATCCCTAAGCCAACCCATAAAACGAGCGTGCGAGCACTCAG
CCGACTGGAGAGGCAGAATGCACAAGCAGGGACCCGACCCGATCCCCCCTACGTGCTGTCAATCC
TACTGCTGCAACCTTCGGTTCGGTCTAATCTTAGACTAGGAATGAACTCCGTAT
Found at i:33836572 original size:26 final size:26
Alignment explanation
Indices: 33836536--33836588 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
33836526 CCGGTTTGAT
*
33836536 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
33836562 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
33836588 C
1 C
33836589 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:33836686 original size:26 final size:26
Alignment explanation
Indices: 33836657--33836709 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
33836647 TCGATCCGAT
33836657 CTTAGAC-TGAGAATGAAC-TCTATATG
1 CTTAGACATG-GAATGAACTTC-ATATG
33836683 CTTAGACATGGAATGAACTTCATATG
1 CTTAGACATGGAATGAACTTCATATG
33836709 C
1 C
33836710 CTAAGCCAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.34, C:0.17, G:0.19, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTTCATATG
Found at i:33836747 original size:121 final size:121
Alignment explanation
Indices: 33836533--33836761 Score: 334
Period size: 121 Copynumber: 1.9 Consensus size: 121
33836523 GATCCGGTTT
* * * * *
33836533 GATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAA
1 GATCTTAGACTGAGAATGAACTCTATATGCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAA
* * * *
33836598 CCCACGAAACGAGCGTACGGGCGCTCAACCGGTCGGAGAGGCAAAAATGTCGATCC
66 ACCACGAAACGACCGTACGGGCGCTCAACCAGTCGGACAGGCAAAAATGTCGATCC
*
33836654 GATCTTAGACTGAGAATGAACTCTATATGCTTAGACAT-GGAATGAACTTCATATGCCTAAGCCA
1 GATCTTAGACTGAGAATGAACTCTATATGCTTAGAC-TGGGAATGAACTCCATATGCCTAAGCCA
* *
33836718 AACCACGAAATGACCGTGCGGGCGCTCAACCAGTCGGACAGGCA
65 AACCACGAAACGACCGTACGGGCGCTCAACCAGTCGGACAGGCA
33836762 GAATGTGCAA
Statistics
Matches: 95, Mismatches: 12, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
121 94 0.99
122 1 0.01
ACGTcount: A:0.30, C:0.24, G:0.26, T:0.20
Consensus pattern (121 bp):
GATCTTAGACTGAGAATGAACTCTATATGCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAA
ACCACGAAACGACCGTACGGGCGCTCAACCAGTCGGACAGGCAAAAATGTCGATCC
Found at i:33837154 original size:159 final size:159
Alignment explanation
Indices: 33836888--33837295 Score: 710
Period size: 159 Copynumber: 2.6 Consensus size: 159
33836878 ATAAAATTCG
*
33836888 TATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGTCGGTCGAAGAGGCATAATGCAC
1 TATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGTCGGTCGAAGAGGCATAATGCAC
33836953 AAGCCGAGGATCGGCCCGGTCCCCCTCTGTGTGTTGTCGGTCCCGCTGCCACAACCCTCGGTCCG
66 AAGCCGAGGATCGGCCCGGTCCCCCTCTGTGTGTTGTCGGTCCCGCTGCCACAACCCTCGGTCCG
33837018 GCTGGGGCTTAGACATGGAATGAACTCCC
131 GCTGGGGCTTAGACATGGAATGAACTCCC
*
33837047 TATGCCTAAGCCAACCCACGAAATGAGCGTGCGGCCGCTCAGTCGGTCGAAGAGGCATAATGCAC
1 TATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGTCGGTCGAAGAGGCATAATGCAC
33837112 AAGCCGAGGATCGGCCCGGTCCCCCTCTGTGTGTTGTCGGTCCCGCTGCCACAACCCTCGGTCCG
66 AAGCCGAGGATCGGCCCGGTCCCCCTCTGTGTGTTGTCGGTCCCGCTGCCACAACCCTCGGTCCG
33837177 GCTGGGGCTTAGACATGGAATGAACTCCC
131 GCTGGGGCTTAGACATGGAATGAACTCCC
* * * * * *
33837206 TATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCAGCCGGTC-AGAGAGGCAGAATGCG
1 TATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGTCGGTCGA-AGAGGCATAATGCA
* *
33837270 CAAGCCGGGGATCGGCCCGATCCCCC
65 CAAGCCGAGGATCGGCCCGGTCCCCC
33837296 CTGCGTGCTA
Statistics
Matches: 237, Mismatches: 11, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
158 1 0.00
159 236 1.00
ACGTcount: A:0.21, C:0.32, G:0.30, T:0.17
Consensus pattern (159 bp):
TATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGTCGGTCGAAGAGGCATAATGCAC
AAGCCGAGGATCGGCCCGGTCCCCCTCTGTGTGTTGTCGGTCCCGCTGCCACAACCCTCGGTCCG
GCTGGGGCTTAGACATGGAATGAACTCCC
Found at i:33837378 original size:26 final size:26
Alignment explanation
Indices: 33837342--33837394 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
33837332 CCAGTCTGAT
33837342 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
33837368 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
33837394 C
1 C
33837395 CTAAGTCAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.23, C:0.21, G:0.30, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCGTATG
Found at i:33838108 original size:26 final size:26
Alignment explanation
Indices: 33838066--33838118 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33838056 GGCTCAAACT
*
33838066 CTTAGACTGGGATTGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
33838092 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
33838118 C
1 C
33838119 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:33838443 original size:25 final size:26
Alignment explanation
Indices: 33838408--33838459 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
33838398 CCGATTTGAT
*
33838408 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCAGTATG
*
33838434 CTTAG-CTGGGGATGAACTCAGTATG
1 CTTAGACTGGGAATGAACTCAGTATG
33838459 C
1 C
33838460 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 19 0.79
26 5 0.21
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCAGTATG
Found at i:33838641 original size:26 final size:26
Alignment explanation
Indices: 33838603--33838655 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33838593 TTGATCCAAT
*
33838603 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
33838629 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
33838655 C
1 C
33838656 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:33838894 original size:158 final size:157
Alignment explanation
Indices: 33838629--33839121 Score: 401
Period size: 158 Copynumber: 3.1 Consensus size: 157
33838619 ACTCTGTATG
* * * * * * *
33838629 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGA-CTGTACGGCCACTCA
1 CTTAGAC-TGGGAATGAACTCCATATACCTAAGCCAACGCACGAAACGAGC-GTGCGGGCGCTGA
* * * * * * * * *
33838692 GCCGGTCGAAGAGGTAAAATGCGCAAGCCAGAGACCAACCCGATCCCCCTTGCATGCTGTCGATC
64 GCCGGCCAAAGAGGCAGAATGCGCAAGCTAGGGATCGACCCGATCCCCCTTGCGTGCTG-CGATC
* *
33838757 CTACTGCCGCAACCCTCAGTTCGATCCGAT
128 CTGCTGCCGCAACCCTCAGTTCGGTCCGAT
* * *
33838787 CTTAGACTGGGAATGAACTCCATATGCCTTAGTCAAC-C-CGCAGAACGAGCGAT-CGGGCGCTG
1 CTTAGACTGGGAATGAACTCCATATACCTAAGCCAACGCACG-A-AACGAGCG-TGCGGGCGCTG
* * *** * *
33838849 AGCCGGCCAGAGAGGCATAATGCGCAAGCTAGGGATCGGTTCGATCCCCCTCTACGTGCTACCGA
63 AGCCGGCCAAAGAGGCAGAATGCGCAAGCTAGGGATCGACCCGATCCCCCT-TGCGTGCT-GCGA
* * * * * **
33838914 TCCCGCTGCCACAACCCTCGGTCTAGGT-GGGG
126 TCCTGCTGCCGCAACCCTCAGT-TCGGTCCGAT
* * * * * *
33838946 CTT-GA-TATGGAATGAACTCCCTATACCTAAGCCAACGCACGAAATGGGCGTGCGGGTGCTTAG
1 CTTAGACT-GGGAATGAACTCCATATACCTAAGCCAACGCACGAAACGAGCGTGCGGGCGCTGAG
* * * *
33839009 CCGGTCAAAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGGTCCCCCCTGCGTG-TGCTGATCC
65 CCGGCCAAAGAGGCAGAATGCGCAAGCTAGGGATCGACCCGATCCCCCTTGCGTGCTGC-GATCC
* *
33839073 TGCTGTCGCAACCCTCAGTCCGGTCCGAT
129 TGCTGCCGCAACCCTCAGTTCGGTCCGAT
33839102 CTTAGACTGGGAATGAACTC
1 CTTAGACTGGGAATGAACTC
33839122 TGTATGCTTA
Statistics
Matches: 259, Mismatches: 60, Indels: 33
0.74 0.17 0.09
Matches are distributed among these distances:
155 4 0.02
156 27 0.10
157 23 0.09
158 165 0.64
159 35 0.14
160 5 0.02
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (157 bp):
CTTAGACTGGGAATGAACTCCATATACCTAAGCCAACGCACGAAACGAGCGTGCGGGCGCTGAGC
CGGCCAAAGAGGCAGAATGCGCAAGCTAGGGATCGACCCGATCCCCCTTGCGTGCTGCGATCCTG
CTGCCGCAACCCTCAGTTCGGTCCGAT
Found at i:33839138 original size:26 final size:26
Alignment explanation
Indices: 33839102--33839154 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
33839092 CCGGTCCGAT
*
33839102 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
33839128 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
33839154 C
1 C
33839155 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:33840000 original size:158 final size:158
Alignment explanation
Indices: 33839495--33839993 Score: 423
Period size: 159 Copynumber: 3.1 Consensus size: 158
33839485 ACTCCGTATG
* ** *
33839495 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCCGTGCAGGCACTCAG
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA-TGGGCGTGCAGGCACTCAG
* * * * * * * * * *
33839560 TCAGTCGGAAAGGCAGAATGCACAAGTC-GGGGACTGGCCCGGTCCTCCTTGCATGCTGTTGATC
65 CCAGTCGGAGAGGCAAAATGCACAAGCCAGGGGTC-GGCCCGGTCCCCCCTACGTGCTGTCGATC
* * * *
33839624 TTACTGTCGCAACCCTCGAGATCTGATCCCGAT
129 CTGCTGTCGCAACCCTC-AG-TCCGGT-CCGAT
* * * ** * * * * *
33839657 CTTAGAC-TGGGAATGAACTTCGAATGCCAAAGTTAACCCACGAAATGTGTGTGCGGGCATTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGGGCGTGCAGGCACTCAG
* * * * * * * *
33839721 CCGGCCGGAGAGGCATAATGCGCAAGCCAGGGATCGACCCGATCCCCCTCTACGTGCTATCGAT-
65 CCAGTCGGAGAGGCAAAATGCACAAGCCAGGGGTCGGCCCGGTCCCCC-CTACGTGCTGTCGATC
* ** * ** *
33839785 CTCGCTGCCATAACCCTCGGTCCGGCTGGGGT
129 CT-GCTGTCGCAACCCTCAGTCCGG-TCCGAT
* * *
33839817 -TTAGACATGGAATGAACTCCCTATGCCTAACCCAACCCACGAAATGGGCGTGCAGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGGGCGTGCAGGCACTCAGC
* *
33839881 CAGTTGGAGAGGCAAAATGAACAAGCCAGGGGTCGGCCCGGTCCCCCCTACGTGCTGTCGATCCT
66 CAGTCGGAGAGGCAAAATGCACAAGCCAGGGGTCGGCCCGGTCCCCCCTACGTGCTGTCGATCCT
* *
33839946 GCTATCGCAACCTTCAGTCCGGTCCGAT
131 GCTGTCGCAACCCTCAGTCCGGTCCGAT
33839974 CTTAGAC-TGGGAATGAACTC
1 CTTAGACAT-GGAATGAACTC
33839994 TTTATGCTTA
Statistics
Matches: 254, Mismatches: 74, Indels: 22
0.73 0.21 0.06
Matches are distributed among these distances:
157 4 0.02
158 47 0.19
159 89 0.35
160 6 0.02
161 46 0.18
162 62 0.24
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGGGCGTGCAGGCACTCAGC
CAGTCGGAGAGGCAAAATGCACAAGCCAGGGGTCGGCCCGGTCCCCCCTACGTGCTGTCGATCCT
GCTGTCGCAACCCTCAGTCCGGTCCGAT
Found at i:33840025 original size:26 final size:26
Alignment explanation
Indices: 33839974--33840026 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
33839964 CCGGTCCGAT
**
33839974 CTTAGACTGGGAATGAACTCTTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
33840000 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
33840026 C
1 C
33840027 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:33840732 original size:26 final size:26
Alignment explanation
Indices: 33840696--33840748 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
33840686 GGCTCAAACT
*
33840696 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
* *
33840722 CTTAGACTGGGGATTAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
33840748 C
1 C
33840749 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.15, G:0.26, T:0.34
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:33841063 original size:20 final size:21
Alignment explanation
Indices: 33841021--33841088 Score: 129
Period size: 21 Copynumber: 3.3 Consensus size: 21
33841011 AGGACTGACC
33841021 TGGATGCCTTATTTGCTTTCA
1 TGGATGCCTTATTTGCTTTCA
33841042 TGGATGCCTTATTTGC-TTCA
1 TGGATGCCTTATTTGCTTTCA
33841062 TGGATGCCTTATTTGCTTTCA
1 TGGATGCCTTATTTGCTTTCA
33841083 TGGATG
1 TGGATG
33841089 GGCTGAAACC
Statistics
Matches: 46, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
20 20 0.43
21 26 0.57
ACGTcount: A:0.15, C:0.18, G:0.22, T:0.46
Consensus pattern (21 bp):
TGGATGCCTTATTTGCTTTCA
Found at i:33848540 original size:159 final size:159
Alignment explanation
Indices: 33847945--33848552 Score: 497
Period size: 159 Copynumber: 3.8 Consensus size: 159
33847935 CACTCCATAT
* * ** ** *
33847945 GCTTCGACATGGGAATGAAACTCCGTATGCCTAA-CCAACCCACGAAAATAGGCGTACGGGCCGC
1 GCTTAGACAT-GGAATG-AACTCCCTATGCCTAAGCCAACCCACGAAACGA-GCGGGCGGG-CAC
* * * * * * * * *
33848009 TCAGCCTGCCGGAGAGGCAGAATGCACAAGTTGGGGATCGACCCGGTCCCCCCCTGCGTGCTGTC
62 TAAGCCGGCCGAAGAGGAAGAATACGCAAGTCGGGGATCAACCCGGTCCCCCTCTGCGTGCTGTC
* ** * * * * *
33848074 GATCCTGCTGCCGCAACCCTCGGTCCAATCT-GA
127 GGTCCCACTGCCACAACCCTCGATTCGA-CTGGG
* ** ** * * *
33848107 TCTTAGAC-TGGGAAATGAACTCTGTATGAATAAGTCAACCCACACGAAACAAAGCGTGGCGGGT
1 GCTTAGACAT-GG-AATGAACTCCCTATGCCTAAGCCAA-CC-CACGAAAC-GAGCG-GGCGGGC
* * * * * * * * ** **** * * *
33848171 GCTAAGCCAGCCCAGGAGGCATAATGCACAAGTCGAAGATTGGTCGGGTCCCCCTCTGTGTGCTA
60 ACTAAGCCGGCCGAAGAGGAAGAATACGCAAGTCGGGGATCAACCCGGTCCCCCTCTGCGTGCTG
*
33848236 TCGGTCCCACTGCCACAACCCTCGGTTCGACTGGG
125 TCGGTCCCACTGCCACAACCCTCGATTCGACTGGG
* * * *
33848271 GCTTAGACATGGAATGCACTCCCTATGCCTAAGCTAACCCACGAAACGGGCGTGCGGGCACTAAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGGGCGGGCACTAAG
* * * * * *
33848336 CCGGCCGAAGAGGCATAATGCGCAAGTCGGGGATCAGCTCAGTCCCCCTCTGCGTGCTGTCGGTC
66 CCGGCCGAAGAGGAAGAATACGCAAGTCGGGGATCAACCCGGTCCCCCTCTGCGTGCTGTCGGTC
*
33848401 CCACTGCCACAACCCTCGATTCGGCTGGG
131 CCACTGCCACAACCCTCGATTCGACTGGG
* * *
33848430 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGGGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGGGCGGGCACTAAG
*
33848495 CCGGCCGGAGAGGAAGAATACGCAAGTCGGGGATCAACCCGGT--CCCTCTGCGTGCTGT
66 CCGGCCGAAGAGGAAGAATACGCAAGTCGGGGATCAACCCGGTCCCCCTCTGCGTGCTGT
33848553 TGATCCTGCT
Statistics
Matches: 361, Mismatches: 77, Indels: 21
0.79 0.17 0.05
Matches are distributed among these distances:
157 15 0.04
159 182 0.50
160 3 0.01
161 25 0.07
162 15 0.04
163 22 0.06
164 93 0.26
165 6 0.02
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.18
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGGGCGGGCACTAAG
CCGGCCGAAGAGGAAGAATACGCAAGTCGGGGATCAACCCGGTCCCCCTCTGCGTGCTGTCGGTC
CCACTGCCACAACCCTCGATTCGACTGGG
Found at i:33848643 original size:26 final size:26
Alignment explanation
Indices: 33848588--33848643 Score: 67
Period size: 26 Copynumber: 2.2 Consensus size: 26
33848578 CCGGTCTGAT
* * *
33848588 CTTAGACTGAGAATGAACTTCGTATG
1 CTTAGACTGAGAATGAACTCCATATA
* *
33848614 CTTAGACTGGGGATGAACTCCATATA
1 CTTAGACTGAGAATGAACTCCATATA
33848640 CTTA
1 CTTA
33848644 AGTCAACCCA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCATATA
Found at i:33849651 original size:184 final size:184
Alignment explanation
Indices: 33849324--33849695 Score: 444
Period size: 184 Copynumber: 2.0 Consensus size: 184
33849314 TCCGGTTGGG
* * * ** * *
33849324 GCTTAGACATGGAATGAACTCCGTATGCCTAGGTCAACCCATGAAATGAACGTGTGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATCCCTAAGCCAACCCACAAAATGAACGTGCGAGCACTCAG
* * * * ** *
33849389 CCGACCGGAGAGGTAGAATGCACAAGCAGGGGCTCGGTCCGGTCCCCCCTACGTGTTGTCGATCC
66 CCGACCGGAGAGGCAGAATGCACAAGCAGGGACTCAGCCCAATCCCCCCTACGTGTTGTCAATCC
* * * *
33849454 TGCTATCGCAACCTTTGGTTCAGT-TCAATTTTAGACTGGGAATGAACTCCATAT
131 TGCTATCGCAACCTTCGGTTCGGTCT-AATCTTAGACTAGGAATGAACTCCATAT
* *
33849508 GCTTAGACATGGAATGAACTCCGTATCCCTAAGCCAACCCACAAAATGAGCGTGCGAGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATCCCTAAGCCAACCCACAAAATGAACGTGCGAGCACTCAG
* * ** *
33849573 CCGGCTGGAGAGGCAGAATGCGTAAGCCAGGGAC-CAGCCCAATCCCCCCTGCGTGTTGTCAATC
66 CCGACCGGAGAGGCAGAATGCACAAG-CAGGGACTCAGCCCAATCCCCCCTACGTGTTGTCAATC
* * *
33849637 TTGCT-GCTGCAACCTTCGGTTCGGTCTAATCTTAGACTAGGAATGAACTCCGTAT
130 CTGCTATC-GCAACCTTCGGTTCGGTCTAATCTTAGACTAGGAATGAACTCCATAT
33849692 GCTT
1 GCTT
33849696 TAGTCAACCA
Statistics
Matches: 157, Mismatches: 28, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
183 1 0.01
184 149 0.95
185 7 0.04
ACGTcount: A:0.24, C:0.27, G:0.26, T:0.23
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCGTATCCCTAAGCCAACCCACAAAATGAACGTGCGAGCACTCAG
CCGACCGGAGAGGCAGAATGCACAAGCAGGGACTCAGCCCAATCCCCCCTACGTGTTGTCAATCC
TGCTATCGCAACCTTCGGTTCGGTCTAATCTTAGACTAGGAATGAACTCCATAT
Found at i:33849992 original size:501 final size:508
Alignment explanation
Indices: 33848971--33850099 Score: 1187
Period size: 501 Copynumber: 2.2 Consensus size: 508
33848961 GGTCTGATTT
* * *
33848971 TAGATTGGGAATGAACTCCGTATGCTTAGACATGGAATCAACTCCGTATGCCTAAGCCAACCCAC
1 TAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCCAC
* * * * * * ** *
33849036 GAAACAAGCATGCGGGCGCTCAACC-GATCGGAGAGGCAGAATGTGTAAGCTGGGGACCAGCCCG
66 AAAACAAGCGTGCGAGCGCTCAGCCGGCT-GGAGAGGCAGAATGCGTAAGCCAGGGACCAGCCCA
* * * *
33849100 ATCTCCCCCTACATGCTGTCGATCCTTCTGTCGTAACCCTCGGCCCGGTCCGATCTTAGACTGGG
130 ATCTCCCCCTACATGCTGTCAATCCTTCTGTCGCAACCCTCGGCCCGGTCCAATCTTAGACTAGG
* ** * ** * **
33849165 AATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGTGTTTGAGCACTGGGTTGGCCGAAAAG
195 AATGAACTCCATATGCCTAAGTCAACCAACCAAACGAGCGTGCGAGCACTGAGCCGGCCGAAAAG
* * * * *
33849230 GCATAATGCGCAAGCTGAGGATCAGCCATATCCCCTTCTGCGTGCTGTCGATCCCGCTGCCAGTC
260 GCATAATACACAAGCCGAGGATCAGCCAGATCCCCTTCTGCATGCTGTC-AT--C-CTG-C-GTC
* * * * * *
33849295 CTGCTACCATAACCCTCAGTCCGGTTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAGGTCA
319 CCGCTACCACAACCCTCAGTACGGTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
* * * * * * * * *
33849360 ACCCATGAAATGAACGTGTGGGCACTCAGCCGACCGGAGAGGTAGAATGCACAAGCAGGGGCTCG
384 ACCCATGAAAAGAACGTGCGGGAACTCAACCGACCCGACAGGCAGAATGCACAAGCAGGAGATCG
* * * * * * * * **
33849425 GTCCGGTCCCCCCTACGTGTTGTCGATCCTGCTATCGCAACCTTTGGTTCAGTTCAATTT
449 CTCCGGTCCCCCCTACGTGCTATCGATCCTACTACCGCAACCCTCGGTTCAGTCCAATAC
* *
33849485 TAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATCCCTAAGCCAACCCAC
1 TAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCCAC
**
33849550 AAAATGAGCGTGCGAGCGCTCAGCCGGCTGGAGAGGCAGAATGCGTAAGCCAGGGACCAGCCCAA
66 AAAACAAGCGTGCGAGCGCTCAGCCGGCTGGAGAGGCAGAATGCGTAAGCCAGGGACCAGCCCAA
* * * * ** *
33849615 TC-CCCCCTGCGTGTTGTCAAT-CTTGCTG-CTGCAACCTTCGGTTCGGTCTAATCTTAGACTAG
131 TCTCCCCCTACATGCTGTCAATCCTT-CTGTC-GCAACCCTCGGCCCGGTCCAATCTTAGACTAG
* * * *
33849677 GAATGAACTCCGTATGCTTTAGTCAACCAACCAAACGAGCGTGCGAGCACTGAGCCGGCC-AGAG
194 GAATGAACTCCATATGCCTAAGTCAACCAACCAAACGAGCGTGCGAGCACTGAGCCGGCCGA-AA
* * *
33849741 AGGCATAATACACAAGCCGGGGATCAGCCCGGTCCCCCTT-TGCATG-T-T-AT-C-G-GTCCCG
258 AGGCATAATACACAAGCCGAGGATCAGCCAGAT-CCCCTTCTGCATGCTGTCATCCTGCGTCCCG
33849799 CTACCACAACCCTCAGTACGGTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
322 CTACCACAACCCTCAGTACGGTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
* * * * *
33849864 CATGAAACAG-GCGTGCGGGAACTTAACCGGCCCGACAGGCAGAATGCGCAAGCCGGAGATCGAC
387 CATGAAA-AGAACGTGCGGGAACTCAACCGACCCGACAGGCAGAATGCACAAGCAGGAGATCG-C
* * *
33849928 T-CGGTCCCCCCTGCGTGCTATCGATCCTACTGCCGCAACCCTCGG-TCTGGTCCAATAC
450 TCCGGTCCCCCCTACGTGCTATCGATCCTACTACCGCAACCCTCGGTTC-AGTCCAATAC
* *
33849986 TAGACTGGGAATGAACTCCGTATGCTTAGAC-TGGGGATGAACTCCGTATACCTAAGTCAACCCA
1 TAGACTGGGAATGAACTCCGTATGCTTAGACAT-GGAATGAACTCCGTATACCTAAGCCAACCCA
* * ** *
33850050 -AGAAACAAGCGTGC-AGACGCTTAGCCGACCAGAGAGGCAGGATGCGTAAG
65 CA-AAACAAGCGTGCGAG-CGCTCAGCCGGCTGGAGAGGCAGAATGCGTAAG
33850100 TCGAGGATCG
Statistics
Matches: 513, Mismatches: 91, Indels: 35
0.80 0.14 0.05
Matches are distributed among these distances:
500 6 0.01
501 249 0.49
502 2 0.00
504 1 0.00
505 1 0.00
509 2 0.00
511 1 0.00
512 6 0.01
513 123 0.24
514 120 0.23
515 2 0.00
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (508 bp):
TAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCCAC
AAAACAAGCGTGCGAGCGCTCAGCCGGCTGGAGAGGCAGAATGCGTAAGCCAGGGACCAGCCCAA
TCTCCCCCTACATGCTGTCAATCCTTCTGTCGCAACCCTCGGCCCGGTCCAATCTTAGACTAGGA
ATGAACTCCATATGCCTAAGTCAACCAACCAAACGAGCGTGCGAGCACTGAGCCGGCCGAAAAGG
CATAATACACAAGCCGAGGATCAGCCAGATCCCCTTCTGCATGCTGTCATCCTGCGTCCCGCTAC
CACAACCCTCAGTACGGTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATG
AAAAGAACGTGCGGGAACTCAACCGACCCGACAGGCAGAATGCACAAGCAGGAGATCGCTCCGGT
CCCCCCTACGTGCTATCGATCCTACTACCGCAACCCTCGGTTCAGTCCAATAC
Found at i:33851076 original size:158 final size:159
Alignment explanation
Indices: 33850733--33851117 Score: 416
Period size: 158 Copynumber: 2.4 Consensus size: 159
33850723 ACTCCGTATC
* * * * * *
33850733 CTTAGGCATTGAATGAACTCCGTAAGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGT
* * * * * *
33850798 CGACCGAAGAGGTAGAATACGCAAGCTGGGGATCGGCTCGGTCCCCTTCTGCATGCTACCGGTCT
66 CGGCCAAAGAGGCAGAATACGCAAGCTAGGGATCGGCTCGGTCCCCTCCTGCATGCTACCGATCT
* * *
33850863 CGCTGCCACAACCCTCGATCCGACTGGGG
131 CGCTGCCACAACCCTCAATCCGACTCGAG
* ** * * *
33850892 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATAAAACGGGCTTACGGGCACTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGT
* * * **
33850957 CGGCCAAAGAGGCAGAATGCGCAAGTTAGGGATTGGC-CTGG-CCCCTCCTGCATGCTGTCGATC
66 CGGCCAAAGAGGCAGAATACGCAAGCTAGGGATCGGCTC-GGTCCCCTCCTGCATGCTACCGATC
* * * ** *
33851020 TTGTTGCCGCAACCCTCAATCCGGTTCGAT
130 TCGCTGCCACAACCCTCAATCCGACTCGAG
* * *
33851050 CTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAA
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
33851114 TCGG
65 TCGG
33851118 TCGGAGAGGC
Statistics
Matches: 183, Mismatches: 41, Indels: 5
0.80 0.18 0.02
Matches are distributed among these distances:
157 1 0.01
158 97 0.53
159 85 0.46
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGT
CGGCCAAAGAGGCAGAATACGCAAGCTAGGGATCGGCTCGGTCCCCTCCTGCATGCTACCGATCT
CGCTGCCACAACCCTCAATCCGACTCGAG
Found at i:33851133 original size:13 final size:13
Alignment explanation
Indices: 33851115--33851140 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
33851105 GGCGCTCAAT
33851115 CGGTCGGAGAGGC
1 CGGTCGGAGAGGC
33851128 CGGTCGGAGAGGC
1 CGGTCGGAGAGGC
33851141 AAAAATGTCC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.23, G:0.54, T:0.08
Consensus pattern (13 bp):
CGGTCGGAGAGGC
Found at i:33851188 original size:26 final size:26
Alignment explanation
Indices: 33851159--33851211 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33851149 CCGATCCGAT
33851159 CTTAGA-ATGAGAATGAACTCCATATG
1 CTTAGACATG-GAATGAACTCCATATG
*
33851185 CTTAGACATGGAATGAACTTCATATG
1 CTTAGACATGGAATGAACTCCATATG
33851211 C
1 C
33851212 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.36, C:0.17, G:0.19, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:33851476 original size:184 final size:184
Alignment explanation
Indices: 33851147--33851480 Score: 456
Period size: 184 Copynumber: 1.8 Consensus size: 184
33851137 AGGCAAAAAT
* *
33851147 GTCCGATCCGATCTTAGAATGAGAATGAACTCCATATGCTTAGACATGGAATGAACTTCATATGC
1 GTCCAATCCGATCTTAGAATGAGAATGAACTCCATATGCTTAGACATGGAATGAAATTCATATGC
* * ** *
33851212 CTAAGCCAACCCACGAAATGACCGTGCGGGCGCTCAACCGGTCGGACAGGCAGAATGTGCAAGCT
66 CTAAGCCAACCCACGAAACGACCGTGCGGCCGCTCAACCGGTCGGACAGGCAGAATGCACAAGCC
*
33851277 GGGGATCGACCCGATCCCCCATGTGTGCTGTCGATCTTGCTCTCATAACCCTCG
131 GAGGATCGACCCGATCCCCCATGTGTGCTGTCGATCTTGCTCTCATAACCCTCG
* ** * *
33851331 GTCCAATCCGATCTTAGACT-AGGAATGAACTCTGTATGCTTAGAC-TGGGGATGAAATTCGTAT
1 GTCCAATCCGATCTTAGAATGA-GAATGAACTCCATATGCTTAGACAT-GGAATGAAATTCATAT
* * ** * *
33851394 GCCTAAGTCAACCCACGAAACGAGCGTGCGGCCGCTCAGTCGGTCGGAGAGGCATAATGCACAAG
64 GCCTAAGCCAACCCACGAAACGACCGTGCGGCCGCTCAACCGGTCGGACAGGCAGAATGCACAAG
*
33851459 CCGAGGATCGGCCCGATCCCCC
129 CCGAGGATCGACCCGATCCCCC
33851481 TCTGTGTGTT
Statistics
Matches: 128, Mismatches: 20, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
183 2 0.02
184 126 0.98
ACGTcount: A:0.26, C:0.28, G:0.26, T:0.21
Consensus pattern (184 bp):
GTCCAATCCGATCTTAGAATGAGAATGAACTCCATATGCTTAGACATGGAATGAAATTCATATGC
CTAAGCCAACCCACGAAACGACCGTGCGGCCGCTCAACCGGTCGGACAGGCAGAATGCACAAGCC
GAGGATCGACCCGATCCCCCATGTGTGCTGTCGATCTTGCTCTCATAACCCTCG
Found at i:33852451 original size:26 final size:26
Alignment explanation
Indices: 33852409--33852461 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33852399 GGCTCAAACT
*
33852409 CTTAGACTGGGATTGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
33852435 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
33852461 C
1 C
33852462 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:33852786 original size:25 final size:26
Alignment explanation
Indices: 33852751--33852802 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
33852741 CCGATTCGAT
33852751 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
33852777 CTTAG-CTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
33852802 C
1 C
33852803 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 19 0.79
26 5 0.21
ACGTcount: A:0.23, C:0.19, G:0.29, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:33852984 original size:26 final size:26
Alignment explanation
Indices: 33852946--33852998 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33852936 TCAATCCAAT
*
33852946 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
33852972 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
33852998 C
1 C
33852999 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:33853081 original size:196 final size:196
Alignment explanation
Indices: 33852749--33853102 Score: 448
Period size: 196 Copynumber: 1.8 Consensus size: 196
33852739 GTCCGATTCG
* * *
33852749 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGCTGGGGATGAACTCTGTATGCCTAAGTCAACC
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGCTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * * * * * ** *
33852814 CACGAAACTAGCGTGCGAGCACTCAACCGGTCGAAAAGGCAGAATGCGCAAGCCGGGGATCGGCT
66 CACGAAACGAGCGTACGAGCACTCAACCGGTCGAAAAGGCAAAATGCGCAAGCCAGAGACCAACC
* *
33852879 CGATCCCCCC-TGCGTGCTGTCGATCCTGCTGCTGGTCTTACTACTGTAACCCTCAGTTCAATCC
131 CGATCCCCCCTTGCATGCTGTCAATCCTGCTGCTGGTCTTACTACTGTAACCCTCAGTTCAATCC
33852943 A
196 A
*
33852944 ATCTTAGACTGGGAATGAACTCTGTATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAA
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAG-C-TGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
33853008 CCCACGAAACGA-CTGTACG-GC-CGTTCAGCCTGTTGAAGAGGTAAAATGCGCAAGCCAGAGAC
64 CCCACGAAACGAGC-GTACGAGCAC--TCAACCGGTCGAAAAGGCAAAATGCGCAAGCCAGAGAC
33853070 CAACCCGATCCCCCCTTGCATGCTGTCAATCCT
126 CAACCCGATCCCCCCTTGCATGCTGTCAATCCT
33853103 ACTACCGTAA
Statistics
Matches: 133, Mismatches: 20, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
194 1 0.01
195 35 0.26
196 81 0.61
197 16 0.12
ACGTcount: A:0.26, C:0.29, G:0.24, T:0.22
Consensus pattern (196 bp):
ATCTTAGACTGGGAATGAACTCCGTATGCTTAGCTGGGAATGAACTCCGTATGCCTAAGCCAACC
CACGAAACGAGCGTACGAGCACTCAACCGGTCGAAAAGGCAAAATGCGCAAGCCAGAGACCAACC
CGATCCCCCCTTGCATGCTGTCAATCCTGCTGCTGGTCTTACTACTGTAACCCTCAGTTCAATCC
A
Found at i:33853483 original size:26 final size:26
Alignment explanation
Indices: 33853447--33853499 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
33853437 CCGGTTCGAT
* *
33853447 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
33853473 CTTAGACTGGGGATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
33853499 C
1 C
33853500 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:33854268 original size:159 final size:158
Alignment explanation
Indices: 33853841--33854335 Score: 408
Period size: 158 Copynumber: 3.1 Consensus size: 158
33853831 ACTCCGTATG
* * * *
33853841 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGTGCAGGCACTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGCACTCAGC
* * * * * *
33853906 CAGTCGGAGAGGCAGAATGCACAAGTC-GGGGACTGGCTCGGTCCTCCCTGCATGCTGTTGATCT
66 CAGTCGGAGAGGCAAAATGCACAAGCCAGGGGTC-GGCCCGGTCCCCCCTGCATGCTGTCGATCT
* * *
33853970 TACTACCGCAACCCTCGGTCTGATCCGAT
130 CACTACCACAACCCTCGGTCGGATCCGAT
* * * ** * * * * * *
33853999 CTTAGAC-TGGGAATGAACTTCGAATGCCGAAGTTAACCCACAAAATGTGCGTCCGGGCATTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGCACTCAG
* * ** * ** * *
33854063 CCGGTCGGAGAGGCATAATGCGTAAGCCAGGGATCAACCCGATCCCCCTCTGCATGCTGTCGGTC
65 CCAGTCGGAGAGGCAAAATGCACAAGCCAGGGGTCGGCCCGGTCCCCC-CTGCATGCTGTCGATC
* * * * ** *
33854128 TCGCTGCCATAACCCTCGGTCCGGCTGGGGT
129 TCACTACCACAACCCTCGGT-CGGATCCGAT
* * * *
33854159 -TTAGACATGGAATGAACTCCCTATGCCTAACCCAACCCACGAAATGGGCGTGCAGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGCACTCAGC
* * * *
33854223 CAGTTGGAGAGGCAAAATGAACAAGCCAGGGGTCGGCCCGGTCCCCCCTACGTGCTGTCGATC-C
66 CAGTCGGAGAGGCAAAATGCACAAGCCAGGGGTCGGCCCGGTCCCCCCTGCATGCTGTCGATCTC
* * * * *
33854287 TGCTATCGCAACCTTCAGTCCGG-TCCGAT
131 -ACTACCACAACCCTCGGT-CGGATCCGAT
33854316 CTTAGAC-TAGGAATGAACTC
1 CTTAGACAT-GGAATGAACTC
33854336 TATATGCTTA
Statistics
Matches: 254, Mismatches: 75, Indels: 16
0.74 0.22 0.05
Matches are distributed among these distances:
157 6 0.02
158 124 0.49
159 118 0.46
160 6 0.02
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGCACTCAGC
CAGTCGGAGAGGCAAAATGCACAAGCCAGGGGTCGGCCCGGTCCCCCCTGCATGCTGTCGATCTC
ACTACCACAACCCTCGGTCGGATCCGAT
Found at i:33854367 original size:26 final size:26
Alignment explanation
Indices: 33854316--33854368 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
33854306 CCGGTCCGAT
*
33854316 CTTAGACTAGGAATGAACTCTATATG
1 CTTAGACTAGGAATGAACTCCATATG
* * *
33854342 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
33854368 C
1 C
33854369 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:33855075 original size:26 final size:26
Alignment explanation
Indices: 33855039--33855091 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
33855029 GGCTCAAACT
*
33855039 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
* *
33855065 CTTAGACTGGGGATTAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
33855091 C
1 C
33855092 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.15, G:0.26, T:0.34
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:33859907 original size:11 final size:11
Alignment explanation
Indices: 33859891--33859923 Score: 66
Period size: 11 Copynumber: 3.0 Consensus size: 11
33859881 TGGTTAGGCT
33859891 CTCCGACGATG
1 CTCCGACGATG
33859902 CTCCGACGATG
1 CTCCGACGATG
33859913 CTCCGACGATG
1 CTCCGACGATG
33859924 GTGCCCCGGG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.18, C:0.36, G:0.27, T:0.18
Consensus pattern (11 bp):
CTCCGACGATG
Found at i:33860506 original size:158 final size:158
Alignment explanation
Indices: 33860018--33860519 Score: 465
Period size: 158 Copynumber: 3.2 Consensus size: 158
33860008 ACTCTGTATG
*
33860018 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGCGCTCAGC
* * * **
33860083 CAACTGGAGAGGTAGAATGCACAAGCTAAGGATTGGCTCGAT-CCCTCCTACGTGCTGTCGATCC
66 CAGCCGGAGAGGCAGAATGCACAAGCTGGGGATTGGCTCGATCCCCT-CTACGTGCTGTCGATCC
***** * *
33860147 TGCTATTGGAACCCTCGATCCGGTCCAAT
130 TGCTGCCACAACCCTCGGTCCGATCCAAT
* * ** * * * *
33860176 CTTAGAC-TAGGAATGAACTCCGTATGCATAAGACAACCCACAAAATGAGCGTGTAGGCACTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGCGCTCAG
* * * * ** * * * * ** *
33860240 CCGGTCGAAGAGGCATAATGTGCAAGTTGGGGATTGGCCCAATCCCCCTTTGGGTGCT-ACTGAT
65 CCAGCCGGAGAGGCAGAATGCACAAGCTGGGGATTGGCTCGAT-CCCCTCTACGTGCTGTC-GAT
* * ***
33860304 CCTGCTGGCACAACCCTCGGTCCGGCTGGGA-
128 CCTGCTGCCACAACCCTCGGTCC-GATCCAAT
* * *
33860335 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGAGTGTGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGCGCTCAGC
* * * *
33860400 TAGCCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCTCGGTCCCCTCTACGTGCTGTCGATCCT
66 CAGCCGGAGAGGCAGAATGCACAAGCTGGGGATTGGCTCGATCCCCTCTACGTGCTGTCGATCCT
* *
33860465 GCTGCCACAACCTTCGGTCCAATCCAAT
131 GCTGCCACAACCCTCGGTCCGATCCAAT
* *
33860493 TTTAGAC-TGGGAATGAACTCTGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
33860520 TTAGACTAAG
Statistics
Matches: 260, Mismatches: 75, Indels: 18
0.74 0.21 0.05
Matches are distributed among these distances:
157 4 0.02
158 140 0.54
159 108 0.42
160 8 0.03
ACGTcount: A:0.25, C:0.28, G:0.27, T:0.21
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGCGCTCAGC
CAGCCGGAGAGGCAGAATGCACAAGCTGGGGATTGGCTCGATCCCCTCTACGTGCTGTCGATCCT
GCTGCCACAACCCTCGGTCCGATCCAAT
Found at i:33860986 original size:355 final size:355
Alignment explanation
Indices: 33860306--33860984 Score: 857
Period size: 355 Copynumber: 1.9 Consensus size: 355
33860296 CTACTGATCC
* *
33860306 TGCTGGCACAACCCTCGGTCCGGCTGGGACTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
1 TGCTGCCACAACCCTCGGTCCGACTGGGACTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
* * * * *
33860371 CCCATGAAACGGGAGTGTGGGCGCTCAGCTAGCCGGAGAGGCAGAATGCACAAGCCGGGGATCGG
66 CCAATGAAACGAGAGTGCGGGCGCTCAGCCAGCCAGAGAGGCAGAATGCACAAGCCGGGGATCGG
* * * *
33860436 CTCGGTCCCCTCTACGTGCTGTCGATCCTGCTGCCACAACCTTCGGTCCAATCCAATTTTAGACT
131 CCCGGTCCCCTCTACGTGCTCTCGATCCTACTGCCACAACCTTCGGTCCAATCCAATCTTAGACT
* * * *
33860501 GGGAATGAACTCTGTATGCTTAGACTAAGGATGAACTCTGTATGCCTAAGTCAACCCATGAAATG
196 AGGAATGAACTCCGTATGCTTAGACTAAGGATGAACTCCGTATGCCTAAGCCAACCCATGAAATG
* * * ** * * * * *
33860566 AGCGTGCAGGTGCTTAGCCGGTCAGAGAGGCATAATACGCAAGCTGGGGATCAGCCCGGTCCCCC
261 AGCGTGCAGGCGCTCAACCGACCAGAGAGGCAGAATACGCAACCCGAGGACCAGCCCGGTCCCCC
33860631 TCTGAGTGCTACCGATCCCGCTGCCGGTCT
326 TCTGAGTGCTACCGATCCCGCTGCCGGTCT
* * *
33860661 TGCTGCCACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTGCCACAACCCTCGGTCCGACTGGGACTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
** * * *
33860726 CCAATGATGCGAGCGTGCGGGCGCTCAGCCGGTCAGAGAGGCAGAATG-AGCAAGCCGGGGATCG
66 CCAATGAAACGAGAGTGCGGGCGCTCAGCCAGCCAGAGAGGCAGAATGCA-CAAGCCGGGGATCG
*** * ***
33860790 GCCCGGT-CCCTCTACGTGCTACT-GATCCTACTGTTGCAACC-TCGGTCCGATTTGATCTTAGA
130 GCCCGGTCCCCTCTACGTGCT-CTCGATCCTACTGCCACAACCTTCGGTCCAATCCAATCTTAGA
* * *
33860852 TTAGGAATGAACTCCGTATGCTTAGGC-ATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAA
194 CTAGGAATGAACTCCGTATGCTTAGACTAAGG-ATGAACTCCGTATGCCTAAGCCAACCCATGAA
* * *
33860916 ATGAGCGTGCGGGCGCTCAACTGACCAGAGAGGCAGAATGCGCAACCCGAGGACC-GACCCGGTC
258 ATGAGCGTGCAGGCGCTCAACCGACCAGAGAGGCAGAATACGCAACCCGAGGACCAG-CCCGGTC
33860980 TCCCC
322 -CCCC
33860985 CTGCGTGTCG
Statistics
Matches: 273, Mismatches: 46, Indels: 11
0.83 0.14 0.03
Matches are distributed among these distances:
352 4 0.01
353 118 0.43
354 32 0.12
355 119 0.44
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (355 bp):
TGCTGCCACAACCCTCGGTCCGACTGGGACTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
CCAATGAAACGAGAGTGCGGGCGCTCAGCCAGCCAGAGAGGCAGAATGCACAAGCCGGGGATCGG
CCCGGTCCCCTCTACGTGCTCTCGATCCTACTGCCACAACCTTCGGTCCAATCCAATCTTAGACT
AGGAATGAACTCCGTATGCTTAGACTAAGGATGAACTCCGTATGCCTAAGCCAACCCATGAAATG
AGCGTGCAGGCGCTCAACCGACCAGAGAGGCAGAATACGCAACCCGAGGACCAGCCCGGTCCCCC
TCTGAGTGCTACCGATCCCGCTGCCGGTCT
Found at i:33861294 original size:159 final size:158
Alignment explanation
Indices: 33860871--33861308 Score: 423
Period size: 159 Copynumber: 2.8 Consensus size: 158
33860861 AACTCCGTAT
* *
33860871 GCTTAGGCATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
* * * * ** * *
33860936 CTGACCAGAGAGGCAGAATGCGCAACCCGAGGACCGACCCGGTCTCCCCCTGCGTGTCGTCGATC
66 CCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATTGGCCCGGTC-CCCCCTGCGTGTCGCCGATC
* * * ** * *
33861001 CTGCTACCATAACCCTTGGTCTGGTCTGA
130 CCGCTACCACAACACTCAGTCTCGACTGA
* * * * * * *
33861030 TCTTAGAC-TGGAAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGAGTGCTGA
1 GCTTAGACATGG-AATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCA
* * * * * * * * ** *
33861094 GCCTGTCGGAGAGGCATAATACGTAAGTCGGGGATTAGCCCGGTCCCTTTCTGCGTG-CTGCCGG
65 GCCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATTGGCCCGGTCCC-CCCTGCGTGTC-GCCGA
* *
33861158 TCCCGTTACCACAACACTCAGTC-CGACTGGG
128 TCCCGCTACCACAACACTCAGTCTCGACT-GA
* *
33861189 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
* * * *
33861254 CCGGCCGGAGTGGCAGAATGTGCGAGCCGAGGATTGGCCCGATCCCCCCTGCGTG
66 CCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATTGGCCCGGTCCCCCCTGCGTG
33861309 CTGTCAATCC
Statistics
Matches: 214, Mismatches: 60, Indels: 11
0.75 0.21 0.04
Matches are distributed among these distances:
158 16 0.07
159 195 0.91
160 3 0.01
ACGTcount: A:0.22, C:0.30, G:0.29, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
CCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATTGGCCCGGTCCCCCCTGCGTGTCGCCGATCC
CGCTACCACAACACTCAGTCTCGACTGA
Found at i:33861364 original size:26 final size:26
Alignment explanation
Indices: 33861335--33861387 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
33861325 CTTGTCCGAT
33861335 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
33861361 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
33861387 C
1 C
33861388 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:33862095 original size:26 final size:26
Alignment explanation
Indices: 33862057--33862109 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
33862047 GGCTCAAACT
33862057 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
33862083 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCTGTATG
33862109 C
1 C
33862110 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:33862441 original size:26 final size:26
Alignment explanation
Indices: 33862402--33862452 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
33862392 GGTCTGATCC
*
33862402 TAGACTGGGAATGAACTTCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
33862428 TAGACTTGGG-ATGAACTCCGTATGC
1 TAGAC-TGGGAATGAACTCCGTATGC
33862453 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.29
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:33862685 original size:343 final size:343
Alignment explanation
Indices: 33862059--33862845 Score: 1387
Period size: 343 Copynumber: 2.3 Consensus size: 343
33862049 CTCAAACTCT
* * * *
33862059 TAGACTGGGAATGAAC-TCTGTATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCA
1 TAGACTGGGAATGAACTTC-GTATGCTTAGACTTGGGATGAACTCCGTATGCCTAAGTCAACCCA
* *
33862123 CGAAACGAGCATGTGGTCGCTCAGCTGATCGGAGAGGCAAAATGCACAAGTCAAGGATCAGCTCG
65 CGAAACGAGCGTGCGGTCGCTCAGCTGATCGGAGAGGCAAAATGCACAAGTCAAGGATCAGCTCG
* *
33862188 ATCCCCTTCTGCGTCCTACCAGTCCCGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGATATGG
130 ATCCCCTTCTGCGTCCTACCAGTCCCGCTGCCACAACCCTCGGTCCAGCTGGGGCTTAGACATGG
*
33862253 AATGAACTCCCTATGCCTAAGCCAACCCATGAAACTGGTGTGCGGGCACTCAGCCGACCGGAGAG
195 AATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGTGTGCGGGCACTCAGCCGACCGGAGAG
*
33862318 GCAGAATGTGCAAGTCGGGGATCGGCCCGATCCCCCCTGTGTGCTGTCAATCCTGCTGCCGCAAC
260 GCAGAATGTGCAAGTCGGGGATCGGCCCGATCCCCCCTGTGTGCTGTCAATCCTACTGCCGCAAC
33862383 CCTCGGTCCGGTCTGATCC
325 CCTCGGTCCGGTCTGATCC
33862402 TAGACTGGGAATGAACTTCGTATGCTTAGACTTGGGATGAACTCCGTATGCCTAAGTCAACCCAC
1 TAGACTGGGAATGAACTTCGTATGCTTAGACTTGGGATGAACTCCGTATGCCTAAGTCAACCCAC
* *
33862467 GAAACGAGCGTACGGTCGCTCAGCTGATCGTAGAGGCAAAATGCACAAGTCAAGGATCAGCTCGA
66 GAAACGAGCGTGCGGTCGCTCAGCTGATCGGAGAGGCAAAATGCACAAGTCAAGGATCAGCTCGA
*
33862532 TCCCCTTTTGCGTCCTACCAGTCCCGCTGCCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGA
131 TCCCCTTCTGCGTCCTACCAGTCCCGCTGCCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGA
33862597 ATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGTGTGCGGGCACTCAGCCGACCGGAGAGG
196 ATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGTGTGCGGGCACTCAGCCGACCGGAGAGG
*
33862662 CAGAATGTGCAAGTCGGGGATCGGCCCGATCCCCCTTGTGTGCTGTCAATCCTACTGCCGCAACC
261 CAGAATGTGCAAGTCGGGGATCGGCCCGATCCCCCCTGTGTGCTGTCAATCCTACTGCCGCAACC
33862727 CTCGGTCCGGTCTGATCC
326 CTCGGTCCGGTCTGATCC
33862745 TAGACTGGGAATGAACTTCGTATGCTTAGACTTGGGATGAACTCCGTATGCCTAAGTCAACCCAC
1 TAGACTGGGAATGAACTTCGTATGCTTAGACTTGGGATGAACTCCGTATGCCTAAGTCAACCCAC
* * * * *
33862810 AAAACGAGAGTGCGGGCGCTCAGCCGGTCGGAGAGG
66 GAAACGAGCGTGCGGTCGCTCAGCTGATCGGAGAGG
33862846 ATGGCCAGAG
Statistics
Matches: 422, Mismatches: 21, Indels: 2
0.95 0.05 0.00
Matches are distributed among these distances:
343 420 1.00
344 2 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (343 bp):
TAGACTGGGAATGAACTTCGTATGCTTAGACTTGGGATGAACTCCGTATGCCTAAGTCAACCCAC
GAAACGAGCGTGCGGTCGCTCAGCTGATCGGAGAGGCAAAATGCACAAGTCAAGGATCAGCTCGA
TCCCCTTCTGCGTCCTACCAGTCCCGCTGCCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGA
ATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGTGTGCGGGCACTCAGCCGACCGGAGAGG
CAGAATGTGCAAGTCGGGGATCGGCCCGATCCCCCCTGTGTGCTGTCAATCCTACTGCCGCAACC
CTCGGTCCGGTCTGATCC
Found at i:33862784 original size:26 final size:26
Alignment explanation
Indices: 33862745--33862795 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
33862735 GGTCTGATCC
*
33862745 TAGACTGGGAATGAACTTCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
33862771 TAGACTTGGG-ATGAACTCCGTATGC
1 TAGAC-TGGGAATGAACTCCGTATGC
33862796 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.29
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:33862991 original size:26 final size:26
Alignment explanation
Indices: 33862952--33863004 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
33862942 TCGGTTCGAT
33862952 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
33862978 CTTAGACATG-GAATGAACTCCGTATG
1 CTTAGAC-TGAGAATGAACTCCGTATG
33863004 C
1 C
33863005 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:33863186 original size:196 final size:196
Alignment explanation
Indices: 33862850--33863263 Score: 535
Period size: 196 Copynumber: 2.1 Consensus size: 196
33862840 GAGAGGATGG
* * ** * *
33862850 CCAGAGAGGCAGAATGCACAAG-CCGAGGATCGATCCAGTTCCCCCTGCATGCTGCCGATCCTGC
1 CCAGAGAGGCAGAATGCACAAGTCAG-GGACCGGCCCGGTCCCCCCTGCATGCTGCCGATCCTGC
* * * * *
33862914 TACTGGTCCTGCAACCTCAGCCCTCGGTTCGGTTCGATCTTAGACTGAGAATGAACTCCGTATGC
65 TACTGGTCCTACAACCGCAACCCTCAGTTCGGTCCGATCTTAGACTGAGAATGAACTCCGTATGC
* * ** * *
33862979 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCAGGTGCTCAGCC
130 TTAGACATGGAATGAACTCCATACGCCTAAGCCAACCCACAAAACGAGCGTGCAGGCGCTCAGCC
33863044 GA
195 GA
* * * *
33863046 CTAGAGAGGTAGAATGCACAAGTCAGGGACCGGCCCGGTCCCCCCTGCATGCTGTCGATCTTGCT
1 CCAGAGAGGCAGAATGCACAAGTCAGGGACCGGCCCGGTCCCCCCTGCATGCTGCCGATCCTGCT
* * *
33863111 GCTGGTCCTACAGCCGCAACCCTCAG-TCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
66 ACTGGTCCTACAACCGCAACCCTCAGTTC-GGTCCGATCTTAGACTGAGAATGAACTCCGTATGC
* * *
33863175 TTAGACATGGAATGAACTCCATACGCCTAAGCGAATCCACAAAACGAGCGTGCGGGCGCTCAGCC
130 TTAGACATGGAATGAACTCCATACGCCTAAGCCAACCCACAAAACGAGCGTGCAGGCGCTCAGCC
33863240 GA
195 GA
* *
33863242 CCGGAGAGGCAGAATGCGCAAG
1 CCAGAGAGGCAGAATGCACAAG
33863264 CACACCCGGT
Statistics
Matches: 185, Mismatches: 31, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
195 2 0.01
196 181 0.98
197 2 0.01
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.19
Consensus pattern (196 bp):
CCAGAGAGGCAGAATGCACAAGTCAGGGACCGGCCCGGTCCCCCCTGCATGCTGCCGATCCTGCT
ACTGGTCCTACAACCGCAACCCTCAGTTCGGTCCGATCTTAGACTGAGAATGAACTCCGTATGCT
TAGACATGGAATGAACTCCATACGCCTAAGCCAACCCACAAAACGAGCGTGCAGGCGCTCAGCCG
A
Found at i:33863652 original size:159 final size:158
Alignment explanation
Indices: 33863273--33863952 Score: 380
Period size: 159 Copynumber: 4.3 Consensus size: 158
33863263 GCACACCCGG
* * *
33863273 TTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACTGAGGGTTG
1 TTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTTCATGTCTAAGCCCCAGTCGGACTGAGGGTTG
* *
33863338 TGGCAACGGGACTAACAGCACGTAGAAGGGGACCGAGCCGATCCCCAGCTTGCGCATTATGCCTC
66 GGGCAACAGGACT-ACAGCACGTAGAAGGGGACCGAGCCGATCCCCAGCTTGCGCATTATGCCTC
*
33863403 TCCGGCCAGCTCAACAGCCACACGCTCGT
130 TCCGGCCAGCTCAACAGCCACACGCTCAT
* ** * * ** *
33863432 TTCATGGGTTATCTTAGGCATACGGAGTTCA-TTCGTAGTCTAAG-ATCAGATCAGA-TCGAGGG
1 TTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTTCAT-GTCTAAGCCCCAG-TCGGACT-GAGGG
* ** * * * * * * ** *
33863494 TTGGGGTAGTAGGATCGT-TAGCACGTAGGAGGGGACTGGGTCGGTCCCTGGCTTTG-GCATTCT
63 TTGGGGCAACAGGA-C-TACAGCACGTAGAAGGGGACCGAGCCGATCCCCAGC-TTGCGCATTAT
* * * * ** *
33863557 GCCTCTCCGGTCGGCTGAGC-GCC-TGCGTGTCTAT
125 GCCTCTCCGGCCAGCTCAACAGCCACACG-CTC-AT
33863591 TTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTTCATGTCTAAGCCCCAGTCGGACTGAGGGTTG
1 TTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTTCATGTCTAAGCCCCAGTCGGACTGAGGGTTG
* * ** * * * * * * * * *
33863656 TGACTGCAGGACCGACAGCATGCAGAGGGGGACCGGGCC-ATTCCTCGGCTTGCCCATTATGCCC
66 GGGCAACAGGA-CTACAGCACGTAGAAGGGGACCGAGCCGA-TCCCCAGCTTGCGCATTATGCCT
* * * * **
33863720 CTTCGGACAGTTCAA-TGCCCACACGCTTGT
129 CTCCGGCCAGCTCAACAG-CCACACGCTCAT
** ** * ** * ** *
33863750 TTCGTGGGTTCACTTAGGCATACAGAGTTCATTCCCA-GTCTAAG-ATCAGACCAAACCGAGGGT
1 TTCGTGGGTTGGCTTAGGCATAGGGAGTTCATT-TCATGTCTAAGCCCCAG-TCGGACTGAGGGT
*** * ** * * * * *
33863813 TACAGTAGTAGGATCAATAGCACGTAAGAA--GGACCGGGCCGATCCCCAGCTTGCGCATTCTAC
64 TGGGGCAACAGGA-CTACAGCACGT-AGAAGGGGACCGAGCCGATCCCCAGCTTGCGCATTATGC
* * * * *
33863876 CTCTCCGGCCGGCTGAGC-GCCCGCACACTCAT
127 CTCTCCGGCCAGCTCAACAG-CCACACGCTCAT
* *
33863908 TTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
1 TTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTTCATGTCTAAGC
33863953 ATTTCAAGTT
Statistics
Matches: 382, Mismatches: 115, Indels: 48
0.70 0.21 0.09
Matches are distributed among these distances:
157 5 0.01
158 101 0.26
159 253 0.66
160 20 0.05
161 3 0.01
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.24
Consensus pattern (158 bp):
TTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTTCATGTCTAAGCCCCAGTCGGACTGAGGGTTG
GGGCAACAGGACTACAGCACGTAGAAGGGGACCGAGCCGATCCCCAGCTTGCGCATTATGCCTCT
CCGGCCAGCTCAACAGCCACACGCTCAT
Found at i:33864090 original size:184 final size:184
Alignment explanation
Indices: 33863767--33864163 Score: 573
Period size: 184 Copynumber: 2.2 Consensus size: 184
33863757 GTTCACTTAG
* *
33863767 GCATA-CAGAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTACAGTAGTAGGATCAAT
1 GCATATCA-AGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTACAGCAGTAGGATCAAC
* * *
33863831 AGCACGTAAGAAGGACCGGGCCGATCCCCAGCTTGCGCATTCTACCTCTCCGGCCGGCTGAGCGC
65 AGCACGCAAGAAGGACCGGGCCGATCCCCAACTTGCGCATTCTACCTCTCCGGCCGACTGAGCGC
33863896 CCGCACACTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
130 CCGCACACTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* * * ** * * *
33863951 GCATTTCAAGTTCATTCCCTGTCTAAGATCGGACTGAACTGAGGGTTGC-GACAGTAGGATCGAC
1 GCATATCAAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTACAG-CAGTAGGATCAAC
* ** *
33864015 AGCACGCAGGGGGGACCGGGCCGATCCCCAACTTGTGCATTCTACCTCTCCGGCCGACTGAGCGC
65 AGCACGCAAGAAGGACCGGGCCGATCCCCAACTTGCGCATTCTACCTCTCCGGCCGACTGAGCGC
* *
33864080 CCGTACACTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTGA
130 CCGCACACTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
**
33864135 GCATATGGAGTTCATTCCCAGTCTAAGAT
1 GCATATCAAGTTCATTCCCAGTCTAAGAT
33864164 TTTGAGCCAC
Statistics
Matches: 188, Mismatches: 23, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
183 1 0.01
184 185 0.98
185 2 0.01
ACGTcount: A:0.23, C:0.27, G:0.26, T:0.24
Consensus pattern (184 bp):
GCATATCAAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTACAGCAGTAGGATCAACA
GCACGCAAGAAGGACCGGGCCGATCCCCAACTTGCGCATTCTACCTCTCCGGCCGACTGAGCGCC
CGCACACTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
Found at i:33865047 original size:26 final size:26
Alignment explanation
Indices: 33864998--33865047 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
33864988 GTTGGCTTAG
*
33864998 GCATACGGAGTTCTTTCCATGTCTGA
1 GCATACGGAGTTCTTCCCATGTCTGA
33865024 GCATACGGAGTTCATTCCCA-GTCT
1 GCATACGGAGTTC-TTCCCATGTCT
33865048 AAGATTTTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 17 0.77
27 5 0.23
ACGTcount: A:0.20, C:0.26, G:0.22, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCTTCCCATGTCTGA
Found at i:33865061 original size:99 final size:99
Alignment explanation
Indices: 33864881--33865073 Score: 350
Period size: 99 Copynumber: 1.9 Consensus size: 99
33864871 CACACGCACA
33864881 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCACGTCTGAGCATACGGAGTTCATTCCCAG
1 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCACGTCTGAGCATACGGAGTTCATTCCCAG
*
33864946 TCTAAGATTTTGAGCCACGGTGCACATGCGCTCG
66 TCTAAGATTTTAAGCCACGGTGCACATGCGCTCG
* * *
33864980 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCTTTCCATGTCTGAGCATACGGAGTTCATTCCCAG
1 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCACGTCTGAGCATACGGAGTTCATTCCCAG
33865045 TCTAAGATTTTAAGCCACGGTGCACATGC
66 TCTAAGATTTTAAGCCACGGTGCACATGC
33865074 TGGGCTCGGG
Statistics
Matches: 90, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
99 90 1.00
ACGTcount: A:0.20, C:0.23, G:0.26, T:0.31
Consensus pattern (99 bp):
TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCACGTCTGAGCATACGGAGTTCATTCCCAG
TCTAAGATTTTAAGCCACGGTGCACATGCGCTCG
Found at i:33866460 original size:26 final size:26
Alignment explanation
Indices: 33866424--33866476 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
33866414 GTTGGCTTAG
33866424 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
33866450 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
33866476 G
1 G
33866477 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:33867104 original size:170 final size:171
Alignment explanation
Indices: 33866825--33867650 Score: 453
Period size: 171 Copynumber: 4.8 Consensus size: 171
33866815 GTTGTAGTAG
* * * * * * ** * * *
33866825 CAGGATTGACAACACACAG-GGGGGACCAGGCCGGTCCTCGGCTTATG-ATTCTGCCTCTCCAAT
1 CAGGATCGACAACACACAGAGGGGGATCGGGCTGATCCCCGGCTTGCGCATTATGCCTCTCCGAC
* * * * * * *
33866888 TGGCTGAGCGCCCACACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTA
66 AGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
* * ** * *
33866953 AGA-TCAGACCGAATCGAGGGTTGCGACAATAAGACC-AGCAG
131 AGACCCAG-CCGAACCGAGGGTTAAGACAACAAGACCGA-CAA
** * * * * *
33866994 CAGGATCGGTAGCACACAG-GGGGGATCGGGCTGATCCTCGGGTTGCGCATTCTGCCTCTTCGAC
1 CAGGATCGACAACACACAGAGGGGGATCGGGCTGATCCCCGGCTTGCGCATTATGCCTCTCCGAC
* * * *
33867058 AGATTGAGCGCCCGCACGCTCGTTTCGTGGGTCGACTTATGCATACGAAGTTCATT-CCATGTCT
66 AGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCT
* * * *
33867122 AA-ACCCCAGTCGTACCGAGGGTTAAGGCAGCAAGACCGACAA
130 AAGA-CCCAGCCGAACCGAGGGTTAAGACAACAAGACCGACAA
* * * * *
33867164 CGGGATTGACAACACGCAGAGGGGGATCGGGCTGATCCCCTGCTTGCGCATTATGCCTCTCCGGC
1 CAGGATCGACAACACACAGAGGGGGATCGGGCTGATCCCCGGCTTGCGCATTATGCCTCTCCGAC
* * *
33867229 CGACTGAGCGCCCGCACGCTCGTTTCGTGAGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTA
66 AGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
** * * * * * *
33867294 AGCATACGGAGTTC-ATTCCCA--GTCTAAGATCGGATCGGATCGAGGGTTA-CGGCAG
131 AG---ACCCAG-CCGA-ACCGAGGGT-TAAGA-C--A----A-C-A-AG--ACCGACAA
* * * * * * * * * * * * *
33867349 TAGGATCGGCAGCACGCAG-GGGGGACCGAGCCGATCCCTGGCTTACGCATTCTGTCTCTTCGGT
1 CAGGATCGACAACACACAGAGGGGGATCGGGCTGATCCCCGGCTTGCGCATTATGCCTC-TCCGA
* * * * * *
33867413 C-GGCTGAGTGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTC
65 CAGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTC
* * * ** * * *
33867476 TAAGCCCCATCCGGACCGAGGGTTGTGGCAACAGGACCGACAG
129 TAAGACCCAGCCGAACCGAGGGTTAAGACAACAAGACCGACAA
* * * * * * *
33867519 C-GAGATTGACAGCACGA-AGAGAGGGATCAGGCTGATCCTCGGCTTACACATTATGCCTCTCCG
1 CAG-GATCGACAACAC-ACAGAGGGGGATCGGGCTGATCCCCGGCTTGCGCATTATGCCTCTCCG
* * * *
33867582 ATC-GACTGAGCGCCTGTACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGT
64 A-CAGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
33867646 CTAAG
128 CTAAG
33867651 CATACGAAGT
Statistics
Matches: 495, Mismatches: 125, Indels: 72
0.72 0.18 0.10
Matches are distributed among these distances:
169 42 0.08
170 119 0.24
171 182 0.37
172 7 0.01
173 3 0.01
174 8 0.02
175 7 0.01
177 1 0.00
178 1 0.00
180 5 0.01
181 4 0.01
182 3 0.01
183 4 0.01
184 86 0.17
185 22 0.04
186 1 0.00
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.22
Consensus pattern (171 bp):
CAGGATCGACAACACACAGAGGGGGATCGGGCTGATCCCCGGCTTGCGCATTATGCCTCTCCGAC
AGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
AGACCCAGCCGAACCGAGGGTTAAGACAACAAGACCGACAA
Found at i:33867305 original size:26 final size:26
Alignment explanation
Indices: 33867269--33867321 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
33867259 GTTGACTTAG
33867269 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
33867295 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
33867321 G
1 G
33867322 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:33867646 original size:355 final size:355
Alignment explanation
Indices: 33866990--33867835 Score: 1059
Period size: 355 Copynumber: 2.4 Consensus size: 355
33866980 AATAAGACCA
* * * * *
33866990 GCAGCAGGATCGGTAGCACACAGGGGGGATCGGGCTGAT-CCTCGGGTTGCGCATTCTGCCTCTT
1 GCAGCAGGATCGGCAGCACGCAGGGGGGACCGGGCCGATCCCT-GGCTTGCGCATTCTGCCTCTT
* * * * *
33867054 C-GACAGATTGAGCGCCCGCACGCTCGTTTCGTGGGTCGACTTATGCATACGAAGTTCATTCCAT
65 CGGTCGGA-TGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTATGCATACGGAGTTCATTCCAT
* * * * *
33867118 GTCTAAACCCCAGTCGTACCGAGGGTTAAGGCAGCAAGACCGACAACGGGATTGACAACACGCAG
129 GTCTAAGCCCCAGTCGGACCGAGGGTTAAGGCAACAAGACCGACAACGAGATTGACAACACGAAG
* * * * * *
33867183 AGGGGGATCGGGCTGATCCCCTGCTTGCGCATTATGCCTCTCCGGCCGACTGAGCGCCCGCACGC
194 AGAGGGATCAGGCTGATCCCCGGCTTACACATTATGCCTCTCCGACCGACTGAGCGCCCGCACGC
* *
33867248 TCGTTTCGTGAGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCC
259 TCGTTTCGTGAGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATCCC
**
33867313 CAGTCTAAGATCGGATCGGATCGAGGGTTACG
324 CAGTCTAAGATCGGATCAAATCGAGGGTTACG
* * * *
33867345 GCAGTAGGATCGGCAGCACGCAGGGGGGACCGAGCCGATCCCTGGCTTACGCATTCTGTCTCTTC
1 GCAGCAGGATCGGCAGCACGCAGGGGGGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTTC
* * * * * *
33867410 GGTCGGCTGAGTGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGT
66 GGTCGGATGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTATGCATACGGAGTTCATTCCATGT
** * * *
33867475 CTAAGCCCCA-TCCGGACCGAGGGTTGTGGCAACAGGACCGACAGCGAGATTGACAGCACGAAGA
131 CTAAGCCCCAGT-CGGACCGAGGGTTAAGGCAACAAGACCGACAACGAGATTGACAACACGAAGA
* * * *
33867539 GAGGGATCAGGCTGATCCTCGGCTTACACATTATGCCTCTCCGATCGACTGAGCGCCTGTACGCT
195 GAGGGATCAGGCTGATCCCCGGCTTACACATTATGCCTCTCCGACCGACTGAGCGCCCGCACGCT
* *
33867604 TGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATCCCC
260 CGTTTCGTGAGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATCCCC
**
33867669 AGTCTAAGATCGGATCAAATCGAGGGTTGTG
325 AGTCTAAGATCGGATCAAATCGAGGGTTACG
* * * * * * * * * * * *
33867700 ACAGCAGCATCGACATCACGTAGAGGGGTACCGGGTCGATCCCCGGCATGCGTATTATGGCTCTT
1 GCAGCAGGATCGGCAGCACGCAG-GGGGGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTT
* * * *
33867765 CGATCGGATCAGCACCCGCACGCTCGTTTCATGGGTTGACTTATGCATACGGAGTTCATTCCCTG
65 CGGTCGGATGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTATGCATACGGAGTTCATTCCATG
33867830 TCTAAG
130 TCTAAG
33867836 ATCGGATCGA
Statistics
Matches: 414, Mismatches: 73, Indels: 7
0.84 0.15 0.01
Matches are distributed among these distances:
354 1 0.00
355 314 0.76
356 99 0.24
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (355 bp):
GCAGCAGGATCGGCAGCACGCAGGGGGGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTTC
GGTCGGATGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTATGCATACGGAGTTCATTCCATGT
CTAAGCCCCAGTCGGACCGAGGGTTAAGGCAACAAGACCGACAACGAGATTGACAACACGAAGAG
AGGGATCAGGCTGATCCCCGGCTTACACATTATGCCTCTCCGACCGACTGAGCGCCCGCACGCTC
GTTTCGTGAGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATCCCCA
GTCTAAGATCGGATCAAATCGAGGGTTACG
Found at i:33867653 original size:26 final size:26
Alignment explanation
Indices: 33867624--33867676 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
33867614 GTTGACTTAG
*
33867624 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
33867650 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
33867676 G
1 G
33867677 ATCGGATCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.30, G:0.19, T:0.23
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:33868193 original size:25 final size:26
Alignment explanation
Indices: 33868155--33868206 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
33868145 GTTGACTTAG
33868155 GCATACGATGTTCATCCCCAGTCTAA
1 GCATACGATGTTCATCCCCAGTCTAA
* *
33868181 GCATAGGA-GTTCATTCCCAGTCTAA
1 GCATACGATGTTCATCCCCAGTCTAA
33868206 G
1 G
33868207 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 17 0.71
26 7 0.29
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGATGTTCATCCCCAGTCTAA
Found at i:33868324 original size:530 final size:530
Alignment explanation
Indices: 33867435--33868929 Score: 1502
Period size: 564 Copynumber: 2.8 Consensus size: 530
33867425 CGCACGCCCG
* * * * *
33867435 TTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCATCCGGACCGAGGGTT
1 TTTCATGGGTTAGCTTACGCATACGAAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTT
* * * * * * * *
33867500 GTGGCAACAGGACCGACAGCGAGATTGACAGCACGAAGA-GAGGGATCAGGCTGATCCTCGGCTT
66 GTGGC-GCAGAACCGGCAACGAGATTGACAGCACGTAGAGGA-GGATCGGGCTGATCCCCGACTT
* * * ** * * * *
33867564 ACACATTATG-C----C--T----CTC--CGATCGACTGAGCGCCTGTACGCTTGTTTCGTGGGT
129 GCCCATTATGCCTTTTCGATCGGCCTCTTCGGTCGGTTGAGCGCCCGCATGCTCGTTTCGTGGGT
* *
33867616 TGACTTAGGCATACGGA-GTTCATCCCCAGTCTAAGCATACGAAGTTCATCCCCAGTCTAAGATC
194 TGACTTAGGCATAC-GATGTTCATCCCCAGTCTAAGCATA-GGAGTTCATTCCCAGTCTAAGATC
** * * * * * * *
33867680 GGATCAAATCGAGGGTTGTGACAGCAGCATCGACATCACGTAGAGGGGTACC-GGGTCGATCCCC
257 GGATCGGATCGAGGGTTGCGACAGCAGGATCGACAGCACGTAGGGGGGGACCAGGCT-AATCCCC
* * * * * * * * **
33867744 GGCATGCGTATTATGGCTCT-TCGATCGGATCAGCACCCGCACGCTCGTTTCATGGGTTGACTTA
321 GGCTTGCGTATTCTGCCACTCTGGCT-GGCTGAGTGCCCGCACGCTCGTTTCATGGGTTGACTTA
* * *
33867808 TGCATACGGAGTTCATTCCCTGTCTAAGATCGGATC-GAACCGATGGTT-A-C-G-GTAGCAGGA
385 TGCATACGGAGTTCATTCCCTGTCTAAGATCGGACCAG-ACCGAAGGTTCAGCAGAGTAGCAAGA
* * * * * *
33867868 TTGACAGCACACAGGAGGGATCTGCCCAG-TCCTCGACTTGCGCATTCTGCCTCTCCGACCGGCT
449 TCGACAACACACAGGAGGGA-CTGCACAGATCCTCGACTTGCACATTCTACCTCTCCGACCGACT
* * *
33867932 GAGC-GCCCGC-CGCTCA
513 GAGCTACCCACACACTCA
* *
33867948 TGTTCGGTGGGTTGGCTT-CGCATAACGAAGTTCA-TCCATGTCTAAG-CCCAACCGGACCGATG
1 T-TTC-ATGGGTTAGCTTACGCAT-ACGAAGTTCATTCCATGTCTAAGCCCCAACCGGACCGA-G
* * *
33868010 GGTTGGTGGGCGCAGAACTGGCAAACGAGATTGGCAGCACGTAGAGGGGGATCGGGCTGATCCCC
62 GGTT-GT-GGCGCAGAACCGGC-AACGAGATTGACAGCACGTAGAGGAGGATCGGGCTGATCCCC
33868075 GACTTGCCCATTATGCCTTTTCGATCGGCCTCTTCGGTCGGTTGAGCGCCCGCATGCTCGTTTCG
124 GACTTGCCCATTATGCCTTTTCGATCGGCCTCTTCGGTCGGTTGAGCGCCCGCATGCTCGTTTCG
33868140 TCGGGGTTGACTTAGGCATACGATGTTCATCCCCAGTCTAAGCATAGGAGTTCATTCCCAGTCTA
189 T--GGGTTGACTTAGGCATACGATGTTCATCCCCAGTCTAAGCATAGGAGTTCATTCCCAGTCTA
* *
33868205 AGATCGGATCGGATCGAGGGTTGCGAGAGCAGGATCGACAGCACGCAGGGGGGGACCAGGCTAAT
252 AGATCGGATCGGATCGAGGGTTGCGACAGCAGGATCGACAGCACGTAGGGGGGGACCAGGCTAAT
*
33868270 CCCCGACTTGCGTATTCTGCCACTCTGGCTGGCTGAGTGCCCGCACGCTCGTTTCGTGGATTCGC
317 CCCCGGCTTGCGTATTCTGCCACTCTGGCTGGCTGAGTGCCCGCACGCTCGTTTC----A-----
*
33868335 TTAGGCGTACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATT-CCTAGTCTAAGATCGGAC
373 -T-GG-GT--TGA---C-TT--A----T--GCATACGGAGTTCATTCCCT-GTCTAAGATCGGAC
* * * **
33868399 CAGACCGAAGGTTGCGACAGCAGGACCAGTAGCAAGATCGACAACACGCAGGGGGGACTGGAGTG
420 CAGACCGAAGGTT----CAGCA-G---AGTAGCAAGATCGACAACACACAGGAGGGACTGCACAG
* * * *
33868464 ATCCTCGGCTTGCACATTCTACCTCTTCGGCCGATTGAGCTACCCACACACTCA
477 ATCCTCGACTTGCACATTCTACCTCTCCGACCGACTGAGCTACCCACACACTCA
*
33868518 TTTCATGGGTTAGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTT
1 TTTCATGGGTTAGCTTACGCATACGAAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTT
* *
33868583 GTGGCGCAGGACCGGCAACGGGATTGACAGCACGTAGAGGAGGATCGGGCTGATCCCCGACTTGC
66 GTGGCGCAGAACCGGCAACGAGATTGACAGCACGTAGAGGAGGATCGGGCTGATCCCCGACTTGC
*
33868648 CCATTATGCCTTTTCGATCGGCCTCTTCGGTCGGTTGAGTGCCCGCATGCTCGTTTCGTGGGTTG
131 CCATTATGCCTTTTCGATCGGCCTCTTCGGTCGGTTGAGCGCCCGCATGCTCGTTTCGTGGGTTG
33868713 ACTTAGGCATACGATGTTCATCCCCAGTCTAAGCATAGGAGTTCATTCCCAGTCTAAGATCGGA-
196 ACTTAGGCATACGATGTTCATCCCCAGTCTAAGCATAGGAGTTCATTCCCAGTCTAAGATCGGAT
* * * **
33868777 CTGGACCGAGGGTTACGACAGCAGGATCGACAGCACGTAGGGGGAGACCAGGCTAATCCTTGGCT
261 C-GGATCGAGGGTTGCGACAGCAGGATCGACAGCACGTAGGGGGGGACCAGGCTAATCCCCGGCT
** * * * *
33868842 TGCACATTCTGCCACTCTGGCTGGCTGAGTGCCCGCACGCTCGTTTCGTGGCTTGGCTTAGGCAT
325 TGCGTATTCTGCCACTCTGGCTGGCTGAGTGCCCGCACGCTCGTTTCATGGGTTGACTTATGCAT
*
33868907 ACGGAGTTCATTCCATGTCTAAG
390 ACGGAGTTCATTCCCTGTCTAAG
33868930 CATACGGAGT
Statistics
Matches: 812, Mismatches: 96, Indels: 123
0.79 0.09 0.12
Matches are distributed among these distances:
513 14 0.02
514 24 0.03
515 28 0.03
516 49 0.06
517 2 0.00
521 1 0.00
523 1 0.00
527 3 0.00
529 25 0.03
530 109 0.13
531 46 0.06
534 1 0.00
538 23 0.03
539 2 0.00
540 1 0.00
541 2 0.00
542 2 0.00
544 3 0.00
546 2 0.00
547 2 0.00
548 2 0.00
550 2 0.00
552 1 0.00
553 2 0.00
554 2 0.00
555 3 0.00
556 39 0.05
557 1 0.00
561 1 0.00
562 1 0.00
563 1 0.00
564 171 0.21
566 104 0.13
567 16 0.02
568 78 0.10
569 28 0.03
570 20 0.02
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.24
Consensus pattern (530 bp):
TTTCATGGGTTAGCTTACGCATACGAAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTT
GTGGCGCAGAACCGGCAACGAGATTGACAGCACGTAGAGGAGGATCGGGCTGATCCCCGACTTGC
CCATTATGCCTTTTCGATCGGCCTCTTCGGTCGGTTGAGCGCCCGCATGCTCGTTTCGTGGGTTG
ACTTAGGCATACGATGTTCATCCCCAGTCTAAGCATAGGAGTTCATTCCCAGTCTAAGATCGGAT
CGGATCGAGGGTTGCGACAGCAGGATCGACAGCACGTAGGGGGGGACCAGGCTAATCCCCGGCTT
GCGTATTCTGCCACTCTGGCTGGCTGAGTGCCCGCACGCTCGTTTCATGGGTTGACTTATGCATA
CGGAGTTCATTCCCTGTCTAAGATCGGACCAGACCGAAGGTTCAGCAGAGTAGCAAGATCGACAA
CACACAGGAGGGACTGCACAGATCCTCGACTTGCACATTCTACCTCTCCGACCGACTGAGCTACC
CACACACTCA
Found at i:33868371 original size:26 final size:26
Alignment explanation
Indices: 33868342--33868391 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
33868332 CGCTTAGGCG
33868342 TACGGAGTTCATTCC-ATGTCTAAGCA
1 TACGGAGTTCATTCCTA-GTCTAAGCA
33868368 TACGGAGTTCATTCCTAGTCTAAG
1 TACGGAGTTCATTCCTAGTCTAAG
33868392 ATCGGACCAG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.22, G:0.20, T:0.32
Consensus pattern (26 bp):
TACGGAGTTCATTCCTAGTCTAAGCA
Found at i:33868757 original size:25 final size:26
Alignment explanation
Indices: 33868719--33868770 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
33868709 GTTGACTTAG
33868719 GCATACGATGTTCATCCCCAGTCTAA
1 GCATACGATGTTCATCCCCAGTCTAA
* *
33868745 GCATAGGA-GTTCATTCCCAGTCTAA
1 GCATACGATGTTCATCCCCAGTCTAA
33868770 G
1 G
33868771 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 17 0.71
26 7 0.29
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGATGTTCATCCCCAGTCTAA
Found at i:33868954 original size:26 final size:26
Alignment explanation
Indices: 33868903--33868955 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33868893 CTTGGCTTAG
*
33868903 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGCCTAA
33868929 GCATACGGAGTTCATTCCCA-GCCTAA
1 GCATACGGAGTTCATT-CCATGCCTAA
33868955 G
1 G
33868956 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGCCTAA
Found at i:33869396 original size:26 final size:26
Alignment explanation
Indices: 33869359--33869411 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
33869349 GTTGACTTAG
33869359 GCATACAGAGTTCACCCCCAGTCTAA
1 GCATACAGAGTTCACCCCCAGTCTAA
**
33869385 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCACCCCCAGTCTAA
33869411 G
1 G
33869412 ATTGGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.30, C:0.30, G:0.17, T:0.23
Consensus pattern (26 bp):
GCATACAGAGTTCACCCCCAGTCTAA
Found at i:33869573 original size:26 final size:26
Alignment explanation
Indices: 33869543--33869595 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
33869533 GTTGGCTTAG
33869543 GCATACAGAATTCATTCCAT-GTCTAA
1 GCATACAGAATTCATT-CATAGTCTAA
* *
33869569 GCATACGGAGTTCATTCATAGTCTAA
1 GCATACAGAATTCATTCATAGTCTAA
33869595 G
1 G
33869596 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 3 0.12
26 21 0.88
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAATTCATTCATAGTCTAA
Found at i:33869973 original size:26 final size:26
Alignment explanation
Indices: 33869919--33869974 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
33869909 TGGGTTGACT
*
33869919 TAAGCACACGGAGTTCATCCTCAGTC
1 TAAGCACACGGAGTTCATCCTCAGCC
* *
33869945 TAAGCATACGGAGTTGATTCC-CAGCC
1 TAAGCACACGGAGTTCA-TCCTCAGCC
33869971 TAAG
1 TAAG
33869975 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (26 bp):
TAAGCACACGGAGTTCATCCTCAGCC
Found at i:33870453 original size:26 final size:26
Alignment explanation
Indices: 33870423--33870475 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
33870413 GTTGGCTTAG
33870423 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
33870449 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
33870475 G
1 G
33870476 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:33871503 original size:25 final size:26
Alignment explanation
Indices: 33871475--33871524 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 26
33871465 TTGACTTCGG
* *
33871475 CATACGGAGTTTA-TCCCAGTCTAAC
1 CATACGGAGTTCATTCACAGTCTAAC
33871500 CATACGGAGTTCATTCACAGTCTAA
1 CATACGGAGTTCATTCACAGTCTAA
33871525 GATCAGATCA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 12 0.55
26 10 0.45
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (26 bp):
CATACGGAGTTCATTCACAGTCTAAC
Found at i:33872603 original size:26 final size:26
Alignment explanation
Indices: 33872573--33872625 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
33872563 GTTGACTTAG
33872573 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
** *
33872599 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
33872625 G
1 G
33872626 ATCAGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:33873110 original size:26 final size:26
Alignment explanation
Indices: 33873074--33873126 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
33873064 GTTGGCTTAG
33873074 GCATACGAAGTTCATTCC-ATGTCTAA
1 GCATACGAAGTTCATTCCTA-GTCTAA
33873100 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCTAGTCTAA
33873126 G
1 G
33873127 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCTAGTCTAA
Found at i:33874742 original size:26 final size:26
Alignment explanation
Indices: 33874712--33874764 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
33874702 GTTGGCTTAG
* **
33874712 GCATATAGAGTTCATTCCGTGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
33874738 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
33874764 G
1 G
33874765 ATTTTGAGCC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:33875314 original size:894 final size:879
Alignment explanation
Indices: 33873601--33875467 Score: 2563
Period size: 894 Copynumber: 2.1 Consensus size: 879
33873591 GGTGATCGGG
* * ** * * * * * * *
33873601 TCGATCCCCTACTTGTGCATTATGCCTCTCCAGCCGGCTCAGCACCCGTACACTCGTTTTGTGGG
1 TCGATCCCCGACTTGCGCATCCTGCCTCTCTAGTCGGTTGAGCGCCCGCACGCTCGTTTTGTGGG
* * * *
33873666 TTGACTTAGGCATACGGAGTTCATTCCCAGCCTAAGATCAGACCAGACCAAGGGTTATGATAGTA
66 TTGACTTAGGCATACGGAGTTCATTCCCAACCAAAGATCAGACCAGACCAAGGGTTATGACAGCA
* * * * * *
33873731 GGAATGACAGCATGCAGGGGGGACCGGGCAGGTCCCCGTCTTACGCATTTTGCCTCTCCGGTCAG
131 GGAATGACAGCACGCAGGGGGGACCGGGCAGGTCCCCGGCATACGCATTCTACCTCTCCGGCCAG
* * * *
33873796 CTGAGCGCCCGCACGCTTGTTTCGTGGGTTAGCTAAGGCATACGAAGTTCATTCCATGTATAAGA
196 CTGAGCACCCGCACGCTCGTTTCATGGGTTAGCTAAGGCATAAGAAGTTCATTCCATGTATAAGA
* *
33873861 TCACAGAGTTCATTCCTAGTCTAAGAGTTTGAGAGACGGTGCACATGCTAGGCTTGGGCATGTGC
261 TCACAGAGTTCATTCCCAGTCTAAGAGTTTGAGACACGGTGCACATGCTAGGCTTGGGCATGTGC
* *
33873926 TGGTGCCGTATTTTTTTCGCCCAGGGCACCATCGCCAGAGCATTGCCAGAGAGCGTAACCAGTGT
326 TGGTGCCGCATTTTTTTCGCCCAGGGCACCATCGCCAGAGCATTGCCAGAGAGCCTAACCAGTGT
* * *
33873991 TATTAGGGGTTCTGGCGATTGGGGGGGTGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGT
391 CATTAGGGGTTCCGGCGATTGGGGGGCTGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGT
*
33874056 ACTTGACCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAG
456 ACTTGACCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
*
33874121 CATTTGAGATTTTATAGGTTTGCCGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
521 CATTTGAGATTTTATAGGTTTGCCGCCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
33874186 CAAACGGTCACAAAATCTTCTCCACTTCGAGTTTTTAGCTCAATTTTTTTGTGCATGCCAACAAA
586 CAAACGGTCACAAAATCTTCTCCACTTCGAGTTTTTAGCTCAATTTTTTTGTGCATGCCAACAAA
* * *
33874251 AATACAAGGATCACCTCTACCAAATTTGGGGACAAAACTCTTTCTAAAAAATTTTAAAAAATCCC
651 AATACAAGGATCACCTCTACCAAATTCGGGGACAAAACTATTTCTAAAAAATTTTAAAAAATCAC
* **
33874316 GAATCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGGGTTGTCTTGCCACGAAACTTCAC
716 GAATCGCAAAAAGTTTCGAAAAACATGAAAAATAGAAAACGGGTCATCTTGCCACGAAACTTCAC
* *
33874381 ATGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAA
781 ATGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGGCAAAAA
33874446 TATGAAGATGTGCTTGAACCCACCTACCACCCGC
846 TATGAAGATGTGCTTGAACCCACCTACCACCCGC
* * *
33874480 TCGATCCTCGGCTTGCGCATCCTGCCTCTCTGGTCGGTTGAGCGCCCGCACGCTCGTTTTGTGGG
1 TCGATCCCCGACTTGCGCATCCTGCCTCTCTAGTCGGTTGAGCGCCCGCACGCTCGTTTTGTGGG
* * * * * * ** *
33874545 TTGACTTAGGCATACAGAGTTTATTCCTAATCAAAGATCAGATCGGACTGAGGGTTGT-AGCAGC
66 TTGACTTAGGCATACGGAGTTCATTCCCAACCAAAGATCAGACCAGACCAAGGGTTATGA-CAGC
* * * *
33874609 AGG-ATCGATAGCACGTAGGGGGGACCGGGTC-GGTCCCTGGCATGCGCATTCTACCTCTCCGGC
130 AGGAAT-GACAGCACGCAGGGGGGACCGGG-CAGGTCCCCGGCATACGCATTCTACCTCTCCGGC
* * * *
33874672 C-GACTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATATAG-AGTTCATTCCGTGTC
193 CAG-CTGAGCACCCGCACGCTCGTTTCATGGGTTAGCTAAGGCATA-AGAAGTTCATTCCATGTA
* * * * *
33874735 TAAGCAT-ACGGAGTTCATTCCCAGTCTAAGATTTTGAGCCACGGTGCACGTGCTGGGC-TGGGC
256 TAAG-ATCACAGAGTTCATTCCCAGTCTAAGAGTTTGAGACACGGTGCACATGCTAGGCTTGGG-
* * *
33874798 CATGTGGTGGTGCGGCATTTTTTTCACCCGGTGCACCATTGCTGG-AGCATCGCCAGAGCATTGC
319 CATGTGCTGGTGCCGCATTTTTTT----C---GC-CCA--G--GGCACCATCGCCAGAGCATTGC
* * *
33874862 CGGAGAGCCTAACCGACG-G-CATTGGGGGTTCCGGCGATTTGTGGGGCTGGGGGGGTGTGCGCA
372 CAGAGAGCCTAACC-A-GTGTCATTAGGGGTTCCGGCGA-TTGGGGGGCT-GGGGGGTGTGCGCA
*
33874925 CATGATGCT-TGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
433 CATGATG-TGTG--ATGGGTGCTGGTACTTGACCCTTATATTGGCCCCCTATCCCTCATCAAACC
*
33874989 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAATAGCCATTAA
495 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCCGCCAATAGCCATTAA
* *
33875054 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTCTCCACTTTGAGTTTTTAGC
560 AGTGTCTGAAATGGGGACACTTTTTTCAAACGGTCACAAAATCTTCTCCACTTCGAGTTTTTAGC
*
33875119 TGAA-TTTTTTGTGCATGCCAACAAAAATACAAGGATCACCTCTACCAAATTCGGGGACAAAACT
625 TCAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACCTCTACCAAATTCGGGGACAAAACT
*
33875183 ATTTCTAAAAAAATTTTAAAAAATCATGAA-CTGCAAAAAGTTTCGAAAAACATGAAAAATAGAA
690 ATTTCT-AAAAAATTTTAAAAAATCACGAATC-GCAAAAAGTTTCGAAAAACATGAAAAATAGAA
* * *
33875247 AATGGGTCATCTTGCCATGGAACTTCACATGAAGGCTTAGGGGACCATTGTATGAATTTACAAGC
753 AACGGGTCATCTTGCCACGAAACTTCACATGAAGGCTTAGGGGACCATTGTATGAATTTACAAGC
* * *
33875312 CATAAAAATGGCATTGGCACGGCAAAAATATGAATATGTGCTTGAATCCACCTACCACCCGT
818 CATAAAAATGGCATTGGCACGGCAAAAATATGAAGATGTGCTTGAACCCACCTACCACCCGC
* * * * **
33875374 TCGATCCCCGACTTGCGCATCCTGCCTTTCTAGTTGGTTGAGCGCCTGCGCGCTCGTTTCATGGG
1 TCGATCCCCGACTTGCGCATCCTGCCTCTCTAGTCGGTTGAGCGCCCGCACGCTCGTTTTGTGGG
*
33875439 TTGACTTAGGCATACGGAGTTCATCCCCA
66 TTGACTTAGGCATACGGAGTTCATTCCCA
33875468 GTCTAAGCAT
Statistics
Matches: 862, Mismatches: 98, Indels: 41
0.86 0.10 0.04
Matches are distributed among these distances:
878 8 0.01
879 268 0.31
880 4 0.00
883 1 0.00
886 2 0.00
887 3 0.00
889 1 0.00
890 45 0.05
891 12 0.01
892 24 0.03
893 66 0.08
894 428 0.50
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.27
Consensus pattern (879 bp):
TCGATCCCCGACTTGCGCATCCTGCCTCTCTAGTCGGTTGAGCGCCCGCACGCTCGTTTTGTGGG
TTGACTTAGGCATACGGAGTTCATTCCCAACCAAAGATCAGACCAGACCAAGGGTTATGACAGCA
GGAATGACAGCACGCAGGGGGGACCGGGCAGGTCCCCGGCATACGCATTCTACCTCTCCGGCCAG
CTGAGCACCCGCACGCTCGTTTCATGGGTTAGCTAAGGCATAAGAAGTTCATTCCATGTATAAGA
TCACAGAGTTCATTCCCAGTCTAAGAGTTTGAGACACGGTGCACATGCTAGGCTTGGGCATGTGC
TGGTGCCGCATTTTTTTCGCCCAGGGCACCATCGCCAGAGCATTGCCAGAGAGCCTAACCAGTGT
CATTAGGGGTTCCGGCGATTGGGGGGCTGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGT
ACTTGACCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
CATTTGAGATTTTATAGGTTTGCCGCCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
CAAACGGTCACAAAATCTTCTCCACTTCGAGTTTTTAGCTCAATTTTTTTGTGCATGCCAACAAA
AATACAAGGATCACCTCTACCAAATTCGGGGACAAAACTATTTCTAAAAAATTTTAAAAAATCAC
GAATCGCAAAAAGTTTCGAAAAACATGAAAAATAGAAAACGGGTCATCTTGCCACGAAACTTCAC
ATGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGGCAAAAA
TATGAAGATGTGCTTGAACCCACCTACCACCCGC
Found at i:33875478 original size:26 final size:26
Alignment explanation
Indices: 33875448--33875500 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
33875438 GTTGACTTAG
33875448 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
33875474 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
33875500 G
1 G
33875501 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:33876048 original size:721 final size:727
Alignment explanation
Indices: 33874672--33876223 Score: 2209
Period size: 721 Copynumber: 2.1 Consensus size: 727
33874662 CCTCTCCGGC
* * ** * **
33874672 CGACTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATATAGAGTTCATTCCGTGTCTA
1 CGACTGAGCACTCG-ACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTA
* *
33874737 AGCATACGGAGTTCATTCCCAGTCTAAGATTTTGAGCCACGGTGCACGTGCTGGGCTGGGCCATG
65 AGCATACGGAGTTCATTCCCAGTCTAAGATTTTGAGCCACGGTGCACATGCTAGGCTGGGCCATG
* **
33874802 TGGTGGTGCGGCATTTTTTTCACCCGGTGCACCATTGCTGGAGCATCGCCAGAGCATTGCCGGAG
130 TGCTGGTGCGGCATTTTTTTCACCCGGTGCACCATTGC--G-G-ATCG-C-GAGCATCACCGGAG
* * * * *
33874867 AGCCTAACCGACGGCATTGGGGGTTCCGGCGATTTGTGGGGCTGGGGGGGTGTGCGCACATGATG
189 AGCCTAACCGACGGCATTGGGGGTTCCGACGATTGGGGGGGCTCGAGGGGTGTGCGCACATGATG
*
33874932 CTTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
254 C-TGCAATGGGTGCTGGGACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
33874997 TCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAATAGCCATTAAAGTGTCTG
318 TCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAATAGCCATTAAAGTGTCTG
* *
33875062 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTCTCCACTTTGAGTTTTTAGCTGAATTTT
383 AAATGGGGACACTTTTTTCAAAAGGTCACAAAATCTTCTCCACTTAGAGTTTTTAGCTGAATTTT
*
33875127 TTGTGCATGCCAACAAAAATACAAGGATCACCTCTACCAAATTCGGGGACAAAACTATTTCTAAA
448 TTATGCATGCCAACAAAAATACAAGGATCACCTCTACCAAATTCGGGGACAAAACTATTTCTAAA
* * *
33875192 AAAATTTTAAAAAATCATGAACTGCAAAAAGTTTCGAAAAACATGAAAAATAGAAAATGGGTCAT
513 AAAATTTTAAAAAATCA-GAACCGCAAAAAGTTTCGAAAAACATGAAAAATAGAAAACGAGTCAT
* *
33875257 CTTGCCATGGAACTTCACATGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATG
577 CTTGCCACGAAACTTCACATGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * *
33875322 GCATTGGCACGGCAAAAATATGAATATGTGCTTGAATCCACCTACCACCCGTTCGATCCCCGACT
642 GCATTGGCACGGCAAAAATATGAAGATGTACTTCAACCCACCTACCACCCGTTCGATCCCCGACT
* * *
33875387 TGCGCATCCTGCCTTTCTAGT
707 TGCGCACCCTACCTCTCTAGT
* ** *
33875408 TGGTTGAGCGCCTGCG-CGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCT
1 CGACTGAGC-ACT-CGACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCT
33875472 AAGCATACGGAGTTCATTCCCAGTCTAAGATTTTGAGCCACGGTGCACATGCTAGGCTTGGG-CA
64 AAGCATACGGAGTTCATTCCCAGTCTAAGATTTTGAGCCACGGTGCACATGCTAGGC-TGGGCCA
* *
33875536 TGTGCTGGTGTC-GTATTTTTTTCACCCAGG-GCACCA-T-C-G-TCG-GAGTATCACCGGAGAG
128 TGTGCTGGTG-CGGCATTTTTTTCACCC-GGTGCACCATTGCGGATCGCGAGCATCACCGGAGAG
* *
33875594 CCTTACCGACGGCATTGGGGGTTTCGACGATTGGGGGGGC-CGAGGGG-GTGCGCACATGATG-T
191 CCTAACCGACGGCATTGGGGGTTCCGACGATTGGGGGGGCTCGAGGGGTGTGCGCACATGATGCT
* * * *
33875656 GCGATGGGTGCTGGGACTTGGCCCTTATATTGGGCCCCC-ATCGCTCATGAAACCTCGGGAACTC
256 GCAATGGGTGCTGGGACTTGGCCCTTATATT-GGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * *
33875720 ACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGGTGCCAGTAGCCATTAAAGTGTTTGAA
320 ACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAA
33875785 ATGGGGACACTTTTTTCAAAAGGTCACAAAATCTTCTCCACTTCAG-GTTTTTAGCTGAATTTGT
385 ATGGGGACACTTTTTTCAAAAGGTCACAAAATCTTCTCCACTT-AGAGTTTTTAGCTGAATTT-T
* * * *
33875849 TTATGCATGCCAACAAAAATACAAGGATCACCTCTACCAAATTTGGGGGCAAAGCTCTTTCTAAA
448 TTATGCATGCCAACAAAAATACAAGGATCACCTCTACCAAATTCGGGGACAAAACTATTTCTAAA
* * **
33875914 AAAATTTTAAAAAATCCA-AACCGTAAAAAGTTTC-AAAAATTATGAAAAATAGAAAACGAGTTG
513 AAAATTTTAAAAAAT-CAGAACCGCAAAAAGTTTCGAAAAA-CATGAAAAATAGAAAACGAGTCA
33875977 TCTTGCCACGAAACTTCACATGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAAT
576 TCTTGCCACGAAACTTCACATGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * * *
33876042 GGCATTGGCATGGTAGAAATATGAAGATGTACTTCAACCCACCTACCACCCGTTTGATCCCCGGC
641 GGCATTGGCACGGCAAAAATATGAAGATGTACTTCAACCCACCTACCACCCGTTCGATCCCCGAC
*
33876107 TTGCGCACCCTACCTCTCTGGT
706 TTGCGCACCCTACCTCTCTAGT
* ** *
33876129 CGACTGAGCACTCGTACCCTCGTTTTGTGGGTGGACTTAGGCATACGGAGTTCATCCCCAGTCTA
1 CGACTGAGCACTCG-ACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTA
*
33876194 AGCATACAGAGTTCATTCCCAGTCTAAGAT
65 AGCATACGGAGTTCATTCCCAGTCTAAGAT
33876224 CGGATTGGAC
Statistics
Matches: 733, Mismatches: 71, Indels: 39
0.87 0.08 0.05
Matches are distributed among these distances:
719 2 0.00
720 7 0.01
721 421 0.57
722 84 0.11
723 16 0.02
724 5 0.01
725 48 0.07
728 3 0.00
730 1 0.00
734 1 0.00
735 1 0.00
736 134 0.18
737 8 0.01
738 2 0.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.27
Consensus pattern (727 bp):
CGACTGAGCACTCGACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAA
GCATACGGAGTTCATTCCCAGTCTAAGATTTTGAGCCACGGTGCACATGCTAGGCTGGGCCATGT
GCTGGTGCGGCATTTTTTTCACCCGGTGCACCATTGCGGATCGCGAGCATCACCGGAGAGCCTAA
CCGACGGCATTGGGGGTTCCGACGATTGGGGGGGCTCGAGGGGTGTGCGCACATGATGCTGCAAT
GGGTGCTGGGACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
CCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGG
ACACTTTTTTCAAAAGGTCACAAAATCTTCTCCACTTAGAGTTTTTAGCTGAATTTTTTATGCAT
GCCAACAAAAATACAAGGATCACCTCTACCAAATTCGGGGACAAAACTATTTCTAAAAAAATTTT
AAAAAATCAGAACCGCAAAAAGTTTCGAAAAACATGAAAAATAGAAAACGAGTCATCTTGCCACG
AAACTTCACATGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
CGGCAAAAATATGAAGATGTACTTCAACCCACCTACCACCCGTTCGATCCCCGACTTGCGCACCC
TACCTCTCTAGT
Found at i:33876205 original size:26 final size:26
Alignment explanation
Indices: 33876169--33876221 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
33876159 GTGGACTTAG
*
33876169 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
33876195 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
33876221 G
1 G
33876222 ATCGGATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:33877004 original size:13 final size:13
Alignment explanation
Indices: 33876988--33877012 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
33876978 GCATTATGCT
33876988 TCTCCGGTCGGCC
1 TCTCCGGTCGGCC
33877001 TCTCCGGTCGGC
1 TCTCCGGTCGGC
33877013 TGAGAGCCCG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.44, G:0.32, T:0.24
Consensus pattern (13 bp):
TCTCCGGTCGGCC
Found at i:33877580 original size:26 final size:26
Alignment explanation
Indices: 33877550--33877600 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
33877540 GTTGGCCTAG
33877550 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
*
33877576 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCAAGTCTA
33877601 TGATTTCGAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:33880225 original size:159 final size:160
Alignment explanation
Indices: 33879996--33880428 Score: 455
Period size: 159 Copynumber: 2.7 Consensus size: 160
33879986 GCAGCATTCA
** * * * * *
33879996 AGGGGGACCGGGCCGATCCCTGGCTTGCACATTTTGCCACTTCGATCGGCTGAGCGCCCGCACAC
1 AGGGGGACCTAGCCGATCCCTGGCTTGCACATTATGCCTCTCCGATCGGCTAAGCGCCCGCACGC
* * * * * *
33880061 CCGTTTCATGGGTTGGCTTAGGCATAGGGTGTTCATTCCATGTCTAAGCCCCAG-CC-AGACCGA
66 TCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGA-ACCAA
* ** * * *
33880124 CGGTTGTGGAAG-CGGAACTGATAGCACGCAG
130 CGGATACGGAAGTAGG-ACTGACAACACGCAG
* *
33880155 AGGGGGACCTAGCCGATCCCTGGCTTGCACATTATGCCTCTCCGGTCGGCTCAGCGCCCGCACGC
1 AGGGGGACCTAGCCGATCCCTGGCTTGCACATTATGCCTCTCCGATCGGCTAAGCGCCCGCACGC
* * * *
33880220 TCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCA-GTCTAAG-ATCAGACCGAATCAA
66 TCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCGAACCAA
* * * *
33880283 TGGATACGGTAGTAGGATTGACAACACGTAG
130 CGGATACGGAAGTAGGACTGACAACACGCAG
* * ** * * *
33880314 GGGGGGA-CTAGGCCGATCCCCGGCTTGCGTATTCTGCCTCTCCGATCGGCTAAGTGCCCACACG
1 AGGGGGACCTA-GCCGATCCCTGGCTTGCACATTATGCCTCTCCGATCGGCTAAGCGCCCGCACG
*
33880378 CTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCA
65 CTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
33880429 TACGGAGTTC
Statistics
Matches: 227, Mismatches: 40, Indels: 13
0.81 0.14 0.05
Matches are distributed among these distances:
158 9 0.04
159 211 0.93
160 7 0.03
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (160 bp):
AGGGGGACCTAGCCGATCCCTGGCTTGCACATTATGCCTCTCCGATCGGCTAAGCGCCCGCACGC
TCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGAACCAAC
GGATACGGAAGTAGGACTGACAACACGCAG
Found at i:33880437 original size:26 final size:26
Alignment explanation
Indices: 33880400--33880452 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33880390 GTTGGCTTAG
33880400 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
33880426 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
33880452 G
1 G
33880453 ATTTTGAGTG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:33881689 original size:25 final size:26
Alignment explanation
Indices: 33881660--33881711 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
33881650 GTTGACTTAG
33881660 GCATACAAAGTTCA-TCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
* *
33881685 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
33881711 G
1 G
33881712 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 12 0.50
26 12 0.50
ACGTcount: A:0.33, C:0.25, G:0.15, T:0.27
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAGTCTAA
Found at i:33882409 original size:26 final size:26
Alignment explanation
Indices: 33882379--33882431 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
33882369 GTTGACTTAG
33882379 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
33882405 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
33882431 G
1 G
33882432 ATCAGATCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:33882600 original size:26 final size:26
Alignment explanation
Indices: 33882564--33882614 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
33882554 TGGCTTAGGA
33882564 ATACGGAGTTCATT-CCATGTCTAAGC
1 ATACGGAGTTCATTCCCA-GTCTAAGC
33882590 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
33882615 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:33882966 original size:26 final size:26
Alignment explanation
Indices: 33882929--33882980 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
33882919 GTTGACTTAG
*
33882929 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGAAGTTCATTCCC-AGTCTAA
33882955 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
33882981 CATCGGACTG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:33883308 original size:26 final size:26
Alignment explanation
Indices: 33883257--33883309 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
33883247 GTTGGCTTAG
* *
33883257 GCATACAGAGTTCATTCTATGTCTAA
1 GCATACAGAGTTCATTCCATGCCTAA
*
33883283 GCATACGGAGTTCATTCCCA-GCCTAA
1 GCATACAGAGTTCATT-CCATGCCTAA
33883309 G
1 G
33883310 TGTTTGAGCC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGCCTAA
Found at i:33884242 original size:159 final size:159
Alignment explanation
Indices: 33883933--33884351 Score: 459
Period size: 159 Copynumber: 2.6 Consensus size: 159
33883923 AGGATCGGGC
* * * * **
33883933 CGATCCCCGACTTGTGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCATGCCCGTTTCGTGGGT
1 CGATCCCCAACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCCTATTTCGTGGGT
* * ** * **
33883998 TGGCTTAGGCATAGGGAGTTCATTCCATGGCTAAGCCATAGTCAGACCAAGGGTTGTGGTAGTGG
66 TGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCAGACCCAGACCAAGGGTTGTGGCAGCAG
* * *
33884063 GACCATCAACACGCAGAGGGGGACCA-AG
131 GACCATCAACACACAAAGGGGGACCAGAT
* * * * *
33884091 CTGATCCCCAACTTGCGCATTCTACATCTCCGGCCGGCTGAGCACCTGCACGCCTATTTCGTGGG
1 C-GATCCCCAACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCCTATTTCGTGGG
* **
33884156 TTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCGACCC-GAACTGAGGGTTGTGGCAGC
65 TTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCAGACCCAG-ACCAAGGGTTGTGGCAGC
* * * * *
33884220 AGGACTGA-CAGCACATAAAGGGGTACCGGAT
129 AGGAC-CATCAACACACAAAGGGGGACCAGAT
* * * *
33884251 CGATCCCCAGCTTGCGCATTATGCCTCTCCGACCGGCTGAGCGCCCGCACG-TTCATTTCATGGG
1 CGATCCCCAACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCCT-ATTTCGTGGG
* *
33884315 TTGGCTTAGGCACACGGAGTTCATTCCATGTCTAAGC
65 TTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
33884352 ATACAAAGTT
Statistics
Matches: 216, Mismatches: 40, Indels: 9
0.82 0.15 0.03
Matches are distributed among these distances:
158 3 0.01
159 210 0.97
160 3 0.01
ACGTcount: A:0.20, C:0.29, G:0.28, T:0.23
Consensus pattern (159 bp):
CGATCCCCAACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCCTATTTCGTGGGT
TGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCAGACCCAGACCAAGGGTTGTGGCAGCAG
GACCATCAACACACAAAGGGGGACCAGAT
Found at i:33889784 original size:26 final size:26
Alignment explanation
Indices: 33889755--33889807 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
33889745 GTTGACTTAG
33889755 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
33889781 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
33889807 G
1 G
33889808 ATTAGATCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:33890654 original size:26 final size:26
Alignment explanation
Indices: 33890625--33890677 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
33890615 GTTGACTTAG
33890625 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
33890651 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
33890677 G
1 G
33890678 ATAAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:33892449 original size:26 final size:26
Alignment explanation
Indices: 33892415--33892465 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
33892405 TGACTTAGGT
*
33892415 ATACTGAGTTCA-TCCCTAGTCTAAGC
1 ATACGGAGTTCATTCCC-AGTCTAAGC
33892441 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
33892466 ATCAGATTAG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:33892785 original size:26 final size:26
Alignment explanation
Indices: 33892749--33892801 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33892739 GTTGGCTTAG
*
33892749 GCATACGGAGTTCATTC-CATGTCTAA
1 GCATACAGAGTTCATTCACA-GTCTAA
33892775 GCATACAGAGTTCATTCACAGTCTAA
1 GCATACAGAGTTCATTCACAGTCTAA
33892801 G
1 G
33892802 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCACAGTCTAA
Found at i:33893501 original size:26 final size:26
Alignment explanation
Indices: 33893471--33893523 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
33893461 GTTGACTTAG
*
33893471 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
33893497 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
33893523 G
1 G
33893524 ATCAAATCAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:33893692 original size:26 final size:26
Alignment explanation
Indices: 33893656--33893706 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
33893646 TGGCTTAGGA
33893656 ATACGGAGTTCATT-CCATGTCTAAGC
1 ATACGGAGTTCATTCCCA-GTCTAAGC
*
33893682 ATACGGTGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
33893707 ATCAAACTGG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.31
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Done.