Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 372 of 402
Found at i:33894050 original size:26 final size:26
Alignment explanation
Indices: 33894021--33894079 Score: 79
Period size: 26 Copynumber: 2.3 Consensus size: 26
33894011 GTTGACTTAG
33894021 GCATACGAAGTT-AATCCCTAGTCTAA
1 GCATACGAAGTTCAATCCC-AGTCTAA
*
33894047 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCAATCCCAGTCTAA
33894073 -CAT-CGAA
1 GCATACGAA
33894080 CTGGATTGAG
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
24 4 0.13
25 3 0.10
26 19 0.61
27 5 0.16
ACGTcount: A:0.34, C:0.25, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCAATCCCAGTCTAA
Found at i:33894084 original size:367 final size:353
Alignment explanation
Indices: 33893546--33894255 Score: 839
Period size: 355 Copynumber: 2.0 Consensus size: 353
33893536 CGAGGGTTGT
* * * *
33893546 GACAGCAAGATCGACAGCACGCAGGGGGGACCTAGCAGGTCCACAGCTTACGTATTCTGCATCTC
1 GACAGCAAGATCGACAGCACGCAGGGGGGACCGAGCAGATCCACAGCTTACGCATTATGCATCTC
* * * * *
33893611 CGACCGACTGAGCGCCGCACGCTCGTTTCGTGGGTTGGCTTAGGAATACGGAGTTCATTCCATGT
66 CGACCGACTGAACGCCGCACGCTCGTTTCGTGGGTTGACTTAGGAATACGAAGTTAATCCCATGT
** *
33893676 CTAAGCATACGGTGTTCATTCCCAGTCTAAGATCAAACTGGATCGAGGGTTGCGATAGCAGGACG
131 CTAAGCATACGAAGTTCATTCCCAGTCTAACATCAAACTGGATCGAGGGTTGC-A-A-CA-G-C-
* * * *
33893741 AACAGTAGGATCGACAACATGCAGGGGGGAACGGTCCGATCCCCGGCTTGCGCATTTTGCCTATC
190 AACA-TAGG-TAG-C-AC--GCAGGGGGGAACGGGCCGATCCCCGGCTTGCGCATTCTGCCCATC
** ** ** *
33893806 TGGTGGGTTGAGCGCCCGCACGCTCGTTTCGTGAGTTGGCTTAGGCATACGGAGTTCATTCCATG
249 CAGCCGACTGAGCGCCCGCACGCCCGTTTCGTGAGTTGGCTTAGGCATACGGAGTTCATTCCATG
* * *
33893871 TCTAAGCCCCGGTCGGACCAAGGGTTGTGGTAGTAGGACC
314 TCTAAGCCCCAGCCGAACCAAGGGTTGTGGTAGTAGGACC
* * * * * * *
33893911 GACAGCAAGGTCGGCAGCACGTAGAGGGGGACCGAGCTGATCCCCGGCTTACGCATTATGCCTCT
1 GACAGCAAGATCGACAGCACGCAG-GGGGGACCGAGCAGATCCACAGCTTACGCATTATGCATCT
* * *
33893976 CCGACTGACTGATAAC-CCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTAATCCC-
65 CCGACCGACTG--AACGCCGCACGCTCGTTTCGTGGGTTGACTTAGGAATACGAAGTTAATCCCA
* * *
33894039 TAGTCTAAGCATACGAAGTTCATTCCCAGTCTAACATCGAACTGGATTGAGGGTTGCAACAGCAG
128 T-GTCTAAGCATACGAAGTTCATTCCCAGTCTAACATCAAACTGGATCGAGGGTTGCAACAGCAA
* * * *
33894104 GATTGGTAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCCCTCCAGCCGAC
192 CATAGGTAGCACGCAGGGGGGAACGGGCCGATCCCCGGCTTGCGCATTCTGCCCATCCAGCCGAC
* * * *
33894169 TGAGCTCCCGCGCGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCC
257 TGAGCGCCCGCACGCCCGTTTCGTGAGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCC
33894234 CCAGCCGAACCAAGGGTTGTGG
322 CCAGCCGAACCAAGGGTTGTGG
33894256 CAACGAGACT
Statistics
Matches: 294, Mismatches: 47, Indels: 18
0.82 0.13 0.05
Matches are distributed among these distances:
355 121 0.41
357 2 0.01
358 1 0.00
359 2 0.01
360 3 0.01
361 2 0.01
362 1 0.00
363 1 0.00
364 2 0.01
365 22 0.07
366 44 0.15
367 91 0.31
368 2 0.01
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.22
Consensus pattern (353 bp):
GACAGCAAGATCGACAGCACGCAGGGGGGACCGAGCAGATCCACAGCTTACGCATTATGCATCTC
CGACCGACTGAACGCCGCACGCTCGTTTCGTGGGTTGACTTAGGAATACGAAGTTAATCCCATGT
CTAAGCATACGAAGTTCATTCCCAGTCTAACATCAAACTGGATCGAGGGTTGCAACAGCAACATA
GGTAGCACGCAGGGGGGAACGGGCCGATCCCCGGCTTGCGCATTCTGCCCATCCAGCCGACTGAG
CGCCCGCACGCCCGTTTCGTGAGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAG
CCGAACCAAGGGTTGTGGTAGTAGGACC
Found at i:33894966 original size:26 final size:26
Alignment explanation
Indices: 33894930--33894982 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33894920 GTTGACTTAG
*
33894930 GCATACGGAGTTCA-TCCCAAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
33894956 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
33894982 G
1 G
33894983 ATCAGACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:33895353 original size:159 final size:158
Alignment explanation
Indices: 33895094--33895459 Score: 377
Period size: 159 Copynumber: 2.3 Consensus size: 158
33895084 CCCGCATGCC
**
33895094 CGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCACAGTCAGACCAAGGG
1 CGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCACACCCAGACCAAGGG
* * * * *
33895159 TTGTGGCAGTGGGACCAGCAACACGGAGAGGGGTACCAAA-CTGATCCCCAACTTGCGCATTCTA
66 TTGTGGCAGCGGGACCAGCAACACAGAAAGAGGTACCAAATC-GATCCCCAACTTGCGCATTATA
*
33895223 CATCTCCGGCCAG-CTGA-GCACCTGCACGC-
130 CATCTCC-GACAGACTGAGGC-CCT-CACGCT
*
33895252 CTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCC-CGACCCGGA-CAGA
1 C-GTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCAC-ACCCAGACCA-A
*** * ** * *
33895315 GGGTTGTGGCAGCGGGACC-GACTGTACATAAAGAGGTACCGGATCGATCCCCAGCTTGCGTATT
63 GGGTTGTGGCAGCGGGACCAG-CAACACAGAAAGAGGTACCAAATCGATCCCCAACTTGCGCATT
* * *
33895379 ATGCCTCTCCGACTGACTGAGTGCCCTCACGCT
127 ATACATCTCCGACAGACTGAG-GCCCTCACGCT
* * * * *
33895412 CATTTCATGGGTTGGCTTAAGCACACGGAGTTCATTCCATGTCTAAGC
1 CGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
33895460 ATATGAAGTT
Statistics
Matches: 174, Mismatches: 25, Indels: 17
0.81 0.12 0.08
Matches are distributed among these distances:
158 8 0.05
159 159 0.91
160 5 0.03
161 2 0.01
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (158 bp):
CGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCACACCCAGACCAAGGG
TTGTGGCAGCGGGACCAGCAACACAGAAAGAGGTACCAAATCGATCCCCAACTTGCGCATTATAC
ATCTCCGACAGACTGAGGCCCTCACGCT
Found at i:33895459 original size:26 final size:26
Alignment explanation
Indices: 33895429--33895484 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
33895419 TGGGTTGGCT
*
33895429 TAAGCACACGGAGTTCATT-CCATGTC
1 TAAGCACACGAAGTTCATTCCCA-GTC
* *
33895455 TAAGCATATGAAGTTCATTCCCAGTC
1 TAAGCACACGAAGTTCATTCCCAGTC
33895481 TAAG
1 TAAG
33895485 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.29
Consensus pattern (26 bp):
TAAGCACACGAAGTTCATTCCCAGTC
Found at i:33900921 original size:26 final size:26
Alignment explanation
Indices: 33900892--33900944 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
33900882 GTTGACTTAG
33900892 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
33900918 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
33900944 G
1 G
33900945 ATTAGATCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:33901790 original size:26 final size:26
Alignment explanation
Indices: 33901761--33901813 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
33901751 GTTGACTTAG
33901761 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
33901787 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
33901813 G
1 G
33901814 ATAAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:33902115 original size:159 final size:158
Alignment explanation
Indices: 33901830--33902129 Score: 368
Period size: 159 Copynumber: 1.9 Consensus size: 158
33901820 CCAGACCAAC
* * * *
33901830 GGTTGTGACAACAGGATCAACAGCACGCAAGGGGGACTGGGCCGGTCCTCGGCTTACGCATTCTG
1 GGTTGTGACAACAGGATCAACAGCACGCAAGGGGGACTGAGCCGATCCTCGACTTACGCATTATG
* * *
33901895 CCTCTCTGATCGACTAAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAAACATACGGAGTTCAT
66 CCACTCCGATCGACTAAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAAACATACAGAGTTCAT
33901960 TCCATGTCTAAACCCCAACCGAACCGAG
131 TCCATGTCTAAACCCCAACCGAACCGAG
* * * *
33901988 GGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGGA-TCGAGCCGATCCTCGACTTGCGCATTA
1 GGTTGTGACAACAGGATCAACAGCACGCA-AGGGGGACT-GAGCCGATCCTCGACTTACGCATTA
* * * * * * * ** **
33902052 TGTCACTCCGGTCGGCTGAGTGCCCGTATGCTTGTTTCATGGGTTGGCTTAGGCATACAGAGTTC
64 TGCCACTCCGATCGACTAAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAAACATACAGAGTTC
*
33902117 GTTCCATGTCTAA
129 ATTCCATGTCTAA
33902130 GCATACGGAG
Statistics
Matches: 117, Mismatches: 23, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
158 27 0.23
159 90 0.77
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (158 bp):
GGTTGTGACAACAGGATCAACAGCACGCAAGGGGGACTGAGCCGATCCTCGACTTACGCATTATG
CCACTCCGATCGACTAAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAAACATACAGAGTTCAT
TCCATGTCTAAACCCCAACCGAACCGAG
Found at i:33902140 original size:26 final size:26
Alignment explanation
Indices: 33902104--33902156 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
33902094 GTTGGCTTAG
*
33902104 GCATACAGAGTTCGTT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
33902130 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
33902156 G
1 G
33902157 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:33902501 original size:26 final size:26
Alignment explanation
Indices: 33902472--33902524 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
33902462 GTTTAGTTAG
33902472 GCATAAAGAGTTCA-TCCCTAGTCTAA
1 GCATAAAGAGTTCAGTCCC-AGTCTAA
**
33902498 GCATACGGAGTTCAGTCCCAGTCTAA
1 GCATAAAGAGTTCAGTCCCAGTCTAA
33902524 G
1 G
33902525 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATAAAGAGTTCAGTCCCAGTCTAA
Found at i:33902628 original size:711 final size:710
Alignment explanation
Indices: 33901376--33902763 Score: 1753
Period size: 711 Copynumber: 2.0 Consensus size: 710
33901366 TGTACACACA
* ** *
33901376 TTTCGTGGCTTGGCTTAGGCATATGGAGTTTAATCCATGTCTAAGCATACGAAGTTCATTCCCAG
1 TTTCATGGCTTGGCTTAGGCATACAGAGTTCAATCCATGTCTAAGCATACGAAGTTCATTCCCAG
* * ** * * *
33901441 TTTCAGATCGGACCGGACTGAGGGTTGTGGCAGTAGGACCAGCAGCAGGATCGGCAGCACGTAGG
66 TCTAAGATCGGACCGGACTGAGGGTTACGGCAGTAGGACCAGCAGCAGGATCGACAGCACATAGA
** * * * *
33901506 GGGGGATCGGGTTGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCAGCTGAGCACACGCACGCT
131 AAGAGATCGAGCTGATCCCCGGCTTGCGCATTCTACCTCTCCGATCAGCTGAGCACACGCACGCT
* * ** *
33901571 CGTTTCATGGGTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCTAGCTGGATTGAGGGT
196 CGTTTCATGGGTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAAGGT
* * ** *
33901636 TGTGGTAGCAAGAGCGACAGTGGGATCGACAGCACGCAGAGAGGGATCGGGCTGATCCCCGGCTT
261 TGTGGCAGCAAGACCGACAGCAGGATCGACAGCACGCAGAGAGGGATCGGGCTGATCCCCAGCTT
*
33901701 GCGCATTATGCCTCTCCGACCGGTTGAGTGCCCGCACGCTAGTTTCGTGGGTTGACTTAGGCATA
326 GCGCATTATACCTCTCCGACCGGTTGAGTGCCCGCACGCTAGTTTCGTGGGTTGACTTAGGCATA
* *
33901766 CAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATAAGACCAGACCAACG
391 AAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCAGTCCCAGTCTAAGATAAGACCAGACCAACG
* * * *
33901831 GTTGTGACAACAGGATCAACAGCACGCAAGGGGGACTGGGCCGGTCCTCGGCTTACGCATTCTGC
456 GTTGCGACAACAAGATCAACAGCACGCAAGGGGGACTGGGCCGATCCTCGGCTTACGCATTCTAC
* *
33901896 CTCTCTGATCGACTAAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAAACATACGGAGTTCATT
521 CTCTCCGATCGACTAAGCGCCCGCACGCCCATTTCATGGGTTGGCTTAAACATACGGAGTTCATT
* *
33901961 CCATGTCTAAACCCCAACCGAACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGGAT
586 CCATGTCTAAACCCCAACCGAACCGAGGGTTGTGGCAGCAGGACCGACAGCACGCAGAGGGGGAC
*
33902026 CGAGCCGATCCTCGACTTGCGCATTATGTCACTCCGGTCGGCTGAGTGCCCGTATGCTTG
651 CGAGCCGATCCCCGACTTGCGCATTATGTCACTCCGGTCGGCTGAGTGCCCGTATGCTTG
* ** *
33902086 TTTCATGGGTTGGCTTAGGCATACAGAGTTCGTTCCATGTCTAAGCATACGGAGTTCATTCCCAG
1 TTTCATGGCTTGGCTTAGGCATACAGAGTTCAATCCATGTCTAAGCATACGAAGTTCATTCCCAG
* * *
33902151 TCTAAGATCGGACCGGACTGAGGGTTACGGTAGTAGGACCAGCA-CTAGGATTGATAGCACATAG
66 TCTAAGATCGGACCGGACTGAGGGTTACGGCAGTAGGACCAGCAGC-AGGATCGACAGCACATAG
* * ** **
33902215 AAAGAGATCGAGCTGATCCCTGGCTTGCGCATTCTACCTTTCC-AGTTGGCTGAG-AGCTTGCAC
130 AAAGAGATCGAGCTGATCCCCGGCTTGCGCATTCTACCTCTCCGA-TCAGCTGAGCA-CACGCAC
* *
33902278 GCTCTTTTCATTGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGA
193 GCTCGTTTCA-TGGGTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGA
* * * *
33902343 AGGTTGTGGCAGTAGGACCGATAGCAGGATCGACAGCACGCAGAGGGGGAAT-GGGCTGATCCCC
257 AGGTTGTGGCAGCAAGACCGACAGCAGGATCGACAGCACGCAGAGAGGG-ATCGGGCTGATCCCC
* * ** * * * * *
33902407 AGCTTGCGCATTCTACCTCTCTGGTCGGTTGAGTGCCTGTACGCTCGTTTCGTGGGTTTAGTTAG
321 AGCTTGCGCATTATACCTCTCCGACCGGTTGAGTGCCCGCACGCTAGTTTCGTGGGTTGACTTAG
* ** * *
33902472 GCATAAAGAGTTCATCCCTAGTCTAAGCATACGGAGTTCAGTCCCAGTCTAAGATCGGATCGGAC
386 GCATAAAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCAGTCCCAGTCTAAGATAAGACCAGAC
* * ** * * * * * * *
33902537 CGAGGGTTGCGGTAGCAAGATCGATAGCACG-TAGGAGGGATTGGGCTGATCCTCGGCTTGCGCA
451 CAACGGTTGCGACAACAAGATCAACAGCACGCAAGG-GGGACTGGGCCGATCCTCGGCTTACGCA
* * * * * ** *
33902601 TTTTACCTCTCCGA-CTGATTGAGCGCCCGTACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGA
515 TTCTACCTCTCCGATC-GACTAAGCGCCCGCACGCCCATTTCATGGGTTGGCTTAAACATACGGA
* * * * * ** *
33902665 GTTCATTCCATGTCTAAGCCCCAGCCGGATCGAGGGTTGTGGCAGCGGGACCGGTAGCATGCAGA
579 GTTCATTCCATGTCTAAACCCCAACCGAACCGAGGGTTGTGGCAGCAGGACCGACAGCACGCAGA
* * *
33902730 GGGGGACCGAGTCGATCCCCGGCTTGTGCATTAT
644 GGGGGACCGAGCCGATCCCCGACTTGCGCATTAT
33902764 TCCATGTCTA
Statistics
Matches: 569, Mismatches: 102, Indels: 13
0.83 0.15 0.02
Matches are distributed among these distances:
709 3 0.01
710 169 0.30
711 395 0.69
712 2 0.00
ACGTcount: A:0.21, C:0.25, G:0.30, T:0.24
Consensus pattern (710 bp):
TTTCATGGCTTGGCTTAGGCATACAGAGTTCAATCCATGTCTAAGCATACGAAGTTCATTCCCAG
TCTAAGATCGGACCGGACTGAGGGTTACGGCAGTAGGACCAGCAGCAGGATCGACAGCACATAGA
AAGAGATCGAGCTGATCCCCGGCTTGCGCATTCTACCTCTCCGATCAGCTGAGCACACGCACGCT
CGTTTCATGGGTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAAGGT
TGTGGCAGCAAGACCGACAGCAGGATCGACAGCACGCAGAGAGGGATCGGGCTGATCCCCAGCTT
GCGCATTATACCTCTCCGACCGGTTGAGTGCCCGCACGCTAGTTTCGTGGGTTGACTTAGGCATA
AAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCAGTCCCAGTCTAAGATAAGACCAGACCAACG
GTTGCGACAACAAGATCAACAGCACGCAAGGGGGACTGGGCCGATCCTCGGCTTACGCATTCTAC
CTCTCCGATCGACTAAGCGCCCGCACGCCCATTTCATGGGTTGGCTTAAACATACGGAGTTCATT
CCATGTCTAAACCCCAACCGAACCGAGGGTTGTGGCAGCAGGACCGACAGCACGCAGAGGGGGAC
CGAGCCGATCCCCGACTTGCGCATTATGTCACTCCGGTCGGCTGAGTGCCCGTATGCTTG
Found at i:33903486 original size:26 final size:26
Alignment explanation
Indices: 33903450--33903500 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
33903440 TGACTTAGGT
33903450 ATACAGAGTTC-ATCCCCAGTCTAAGC
1 ATACAGAGTTCAAT-CCCAGTCTAAGC
* *
33903476 ATACGGAGTTCAATCCTAGTCTAAG
1 ATACAGAGTTCAATCCCAGTCTAAG
33903501 ATCGAACCAG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 20 0.91
27 2 0.09
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.25
Consensus pattern (26 bp):
ATACAGAGTTCAATCCCAGTCTAAGC
Found at i:33903977 original size:26 final size:26
Alignment explanation
Indices: 33903947--33904002 Score: 71
Period size: 26 Copynumber: 2.2 Consensus size: 26
33903937 TGGGTTGGCT
33903947 TAAGCATACAGAA-TTCATT-CCATGTC
1 TAAGCATAC-GAAGTTCATTCCCA-GTC
*
33903973 TAAGCATACGAAGTTCTTTCCCAGTC
1 TAAGCATACGAAGTTCATTCCCAGTC
33903999 TAAG
1 TAAG
33904003 ATTGAACCGG
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
25 3 0.11
26 21 0.78
27 3 0.11
ACGTcount: A:0.32, C:0.23, G:0.14, T:0.30
Consensus pattern (26 bp):
TAAGCATACGAAGTTCATTCCCAGTC
Found at i:33904348 original size:157 final size:154
Alignment explanation
Indices: 33904039--33904485 Score: 408
Period size: 157 Copynumber: 2.8 Consensus size: 154
33904029 GTAGGACCAG
* * * *
33904039 CAGCAGGATCGACAGCACGCAGGGGGGACCGGGTCGATCCCCGGCTTACACATTCTACCTCTTCG
1 CAGCAGGATCGACAGCACGCA--GGGGACC-GG-CGATCCCTGGCTTGCGCATTCTACCTCTCCG
* * * * * *
33904104 GCCGGCTGAGCACCCGCACACACATTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTC
62 GCC-GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATT-CCAGTC
*
33904169 TAAG-ATCAGATCAAATCGAGGGT-TGCGA
125 TAAGCACCAGATCAAATCGAGGGTATGCGA
* * *
33904197 TAGCAAGATCGACAGCATGCATGGGGACCGGACCGATCCCTGGCTTGCGCATTCTACCTCTCCGG
1 CAGCAGGATCGACAGCACGCA-GGGGACCGG--CGATCCCTGGCTTGCGCATTCTACCTCTCCGG
*
33904262 CCAGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAAGGAG-TCATTCCATGTCT
63 CC-GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCA-GTCT
* * * *
33904326 AAGCCCCCAG-TCAGA-CTGAGGGTATGTGG
126 AAG-CACCAGATCAAATC-GAGGGTATGCGA
* * * * * * *
33904355 CAGCCGGGAACCAGGCAACACACAGCAGGACTAGGCGATCCCTGGCTTG-GCATTCTACCTCTCC
1 CAG-CAGG-ATC-GACAGCACGCAG-GGGAC-CGGCGATCCCTGGCTTGCGCATTCTACCTCTCC
* * *
33904419 GACCGCTGAGCGCCCGCACGCTCGTTT-ATGGGTTGGC-TAGGCATACGGAGTTCATTCCAG-CT
61 GGCCGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCAGTCT
33904481 AAGCA
126 AAGCA
33904486 AATGAGTTCA
Statistics
Matches: 240, Mismatches: 37, Indels: 28
0.79 0.12 0.09
Matches are distributed among these distances:
154 1 0.00
155 8 0.03
156 28 0.12
157 105 0.44
158 48 0.20
159 20 0.08
160 17 0.07
161 11 0.05
162 2 0.01
ACGTcount: A:0.21, C:0.30, G:0.28, T:0.21
Consensus pattern (154 bp):
CAGCAGGATCGACAGCACGCAGGGGACCGGCGATCCCTGGCTTGCGCATTCTACCTCTCCGGCCG
CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCAGTCTAAGCA
CCAGATCAAATCGAGGGTATGCGA
Found at i:33904868 original size:26 final size:26
Alignment explanation
Indices: 33904838--33904890 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33904828 GTTGACTTAG
*
33904838 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACCGAGTTCATTCCC-AGTCTAA
33904864 GCATACCGAGTTCATTCCCAGTCTAA
1 GCATACCGAGTTCATTCCCAGTCTAA
33904890 G
1 G
33904891 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACCGAGTTCATTCCCAGTCTAA
Found at i:33905583 original size:26 final size:26
Alignment explanation
Indices: 33905554--33905606 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
33905544 GATGACTTGG
* *
33905554 GCATACAGAGTTTATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCACTCTAA
* *
33905580 GCATACGGAGTTCATTCCCACTCTAA
1 GCATACAGAGTTCATCCCCACTCTAA
33905606 G
1 G
33905607 ATCATACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCACTCTAA
Found at i:33905935 original size:159 final size:158
Alignment explanation
Indices: 33905712--33906077 Score: 405
Period size: 158 Copynumber: 2.3 Consensus size: 158
33905702 CGCCCTCAGG
* *
33905712 TCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGAACCGAGG
1 TCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACAGAACCGAGG
* ** *
33905777 GTTATGGCAGCAGGACCGGCAGCCCATAAAGGGGGACCAGGCCGATCCCAGGCTTGCGCATTATG
66 GTTACGGCAGCAGGACCAACAGCCCAT-AAGGGGGACCAGGCCGATCCCAGACTTGCGCATTATG
* *
33905842 CCTCTCCGATCGACTCAGTGCCCGCACGC
130 CCTCTCCGACCGACTCAGCGCCCGCACGC
* * ** *
33905871 TCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCA-GTCTAAG-GTCAGACTAG-ATCG
1 TCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCA-AC-AGAACCG
* * * * ** * * * * *
33905933 AGGGTTGCGGTAGTAGGATCAACAGTGCGTAAGGGGGACTAGGTCGATCCCCGACTTGCGCATTC
63 AGGGTTACGGCAGCAGGACCAACAGCCCATAAGGGGGACCAGGCCGATCCCAGACTTGCGCATTA
* * * *
33905998 TGGCTCTCTGACCGACTGAGCGCCTGCACGC
128 TGCCTCTCCGACCGACTCAGCGCCCGCACGC
* *
33906029 TCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
1 TCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
33906078 ATACAGAGTT
Statistics
Matches: 170, Mismatches: 32, Indels: 10
0.80 0.15 0.05
Matches are distributed among these distances:
157 3 0.02
158 97 0.57
159 66 0.39
160 4 0.02
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (158 bp):
TCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACAGAACCGAGG
GTTACGGCAGCAGGACCAACAGCCCATAAGGGGGACCAGGCCGATCCCAGACTTGCGCATTATGC
CTCTCCGACCGACTCAGCGCCCGCACGC
Found at i:33906080 original size:26 final size:26
Alignment explanation
Indices: 33906050--33906102 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33906040 GTTGGCTTAG
*
33906050 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACAGAGTTCATTCCTA-GTCTAA
33906076 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
33906102 G
1 G
33906103 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:33906553 original size:26 final size:26
Alignment explanation
Indices: 33906523--33906575 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
33906513 TTTGGCTTTG
33906523 GCATACGGAA-TTCATT-CCATGTCTAA
1 GCATAC-GAAGTTCATTCCCA-GTCTAA
33906549 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
33906575 G
1 G
33906576 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 3 0.12
26 19 0.76
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:33907638 original size:147 final size:146
Alignment explanation
Indices: 33907360--33907626 Score: 340
Period size: 147 Copynumber: 1.8 Consensus size: 146
33907350 TGAGCACCCA
* ** * * *
33907360 CACGCTCGTTTCATGGGTTGACTTATGCATATGGAGTTCATTCCCAGTCTAATATTGAATCAGAC
1 CACGCTCATTTCATGGGTTGACTTATGCATACAGAGTTCACTCCCAGTCTAAGATAGAATCAGAC
* * * * * *
33907425 CGAGGGTTGCGATAGTAGGATTGACAGCACGCAGAGGGGGATTGAGTTAATCCTCGATTTACGCA
66 CGAGGGTTACGACAGCAGGATAGACAGCACGCAGAGGGGGACTGAGCTAATCCTCGATTTA-GCA
33907490 TTATGCCTCAGTGCCCG
130 TTATGCCTCAGTGCCCG
*
33907507 CACGCTCATTTCGTGGGTTGACTTATGCATACAGAGTTCACTCCCAGTCTAAGATCAG-ATCAGA
1 CACGCTCATTTCATGGGTTGACTTATGCATACAGAGTTCACTCCCAGTCTAAGAT-AGAATCAGA
* * * *
33907571 CCGAGGGTTACGGCAGCAGGATAGATAGCACGCATG-GGGGGACTGGGCTGATCCTC
65 CCGAGGGTTACGACAGCAGGATAGACAGCACGCA-GAGGGGGACTGAGCTAATCCTC
33907627 CGCTTGTGCA
Statistics
Matches: 101, Mismatches: 17, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
147 99 0.98
148 2 0.02
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (146 bp):
CACGCTCATTTCATGGGTTGACTTATGCATACAGAGTTCACTCCCAGTCTAAGATAGAATCAGAC
CGAGGGTTACGACAGCAGGATAGACAGCACGCAGAGGGGGACTGAGCTAATCCTCGATTTAGCAT
TATGCCTCAGTGCCCG
Found at i:33908086 original size:26 final size:26
Alignment explanation
Indices: 33908057--33908109 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
33908047 GTTGACTTAG
33908057 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
33908083 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
33908109 G
1 G
33908110 ATTGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:33908197 original size:354 final size:359
Alignment explanation
Indices: 33907645--33908295 Score: 929
Period size: 354 Copynumber: 1.8 Consensus size: 359
33907635 CATTCTGTCG
** * * *
33907645 CTCCGACCGGTTGAGCGCCCACACGCTCGTTTCGTGGTTGGCTTAGGCATACGGTGTTCATTCCA
1 CTCCGACCGACTGAGCGCCCACACGCTCGTTTCGTGGTTGACTTAGGCATACGGAGTTCATCCCA
*
33907710 TGTCTAAGCAAACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACTAAGGGTTGTGGCAGTAGT
66 TGTCTAAGCAAACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACAAAGGGTTGTGGCAG-AG-
* * * *
33907775 ACCAACAGCAGGATCGGCAGCACGTAGGGGGGATCGAGCCGATCCCTGGCTTGCGCATTCTACCT
129 ----ACAGCAGGATCGACAGCACGTAGGAGGGATCGAGACGATCCCTAGCTTGCGCATTCTACCT
* *
33907840 CTCTAGCCGACTGAGCGCCTGCACACTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCC
190 CTCTAGCCGACTGAGCGCCCGCACACCCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCC
*
33907905 ATGTCTAAGCCCCAGTCGGACTGAGGCTTGTGACAGCCAGACCGGTAGCGGGATCGGCAGCACTA
255 ATGTCTAAGCCCCAGTCGGACCGAGGCTTGTGACAGCCAGACCGGTAGCGGGATCGGCAGCACTA
33907970 GAGGGGGATCGGGTTGATCCCTGGCTTGCGCATTATGCCT
320 GAGGGGGATCGGGTTGATCCCTGGCTTGCGCATTATGCCT
**
33908010 CTCCGACCGACTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCC
1 CTCCGACCGACTGAGCGCCCACACGCTCGTTTCGT-GGTTGACTTAGGCATACGGAGTTCAT-CC
*
33908075 CA-GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACAAAGGG-T-T-GC-G-G
64 CATGTCTAAGCAAACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACAAAGGGTTGTGGCAGAG
* * * * *
33908134 -CAGCAGGATCGATAGCACGTAGGAGGGATCGGGACGATCCTTAGCTTGCGCATTTTGCCTCTCT
129 ACAGCAGGATCGACAGCACGTAGGAGGGATCGAGACGATCCCTAGCTTGCGCATTCTACCTCTCT
* * * **
33908198 GGCCGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGT
194 AGCCGACTGAGCGCCCGCACACCCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGT
* *
33908263 CTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGC
259 CTAAGCCCCAGTCGGACCGAGGCTTGTGACAGC
33908296 GGGACCAGCA
Statistics
Matches: 256, Mismatches: 28, Indels: 15
0.86 0.09 0.05
Matches are distributed among these distances:
354 143 0.56
360 1 0.00
362 1 0.00
363 2 0.01
364 1 0.00
365 32 0.12
366 73 0.29
367 3 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (359 bp):
CTCCGACCGACTGAGCGCCCACACGCTCGTTTCGTGGTTGACTTAGGCATACGGAGTTCATCCCA
TGTCTAAGCAAACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACAAAGGGTTGTGGCAGAGAC
AGCAGGATCGACAGCACGTAGGAGGGATCGAGACGATCCCTAGCTTGCGCATTCTACCTCTCTAG
CCGACTGAGCGCCCGCACACCCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCT
AAGCCCCAGTCGGACCGAGGCTTGTGACAGCCAGACCGGTAGCGGGATCGGCAGCACTAGAGGGG
GATCGGGTTGATCCCTGGCTTGCGCATTATGCCT
Found at i:33908587 original size:26 final size:26
Alignment explanation
Indices: 33908558--33908610 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
33908548 GTTGGCTTAG
*
33908558 GCATACAGAGTTTATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
33908584 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
33908610 G
1 G
33908611 ATCGGATTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:33908966 original size:26 final size:26
Alignment explanation
Indices: 33908937--33908989 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
33908927 GTTGACTTAG
33908937 GCATACGGAATTCATCCCCAGTCTAA
1 GCATACGGAATTCATCCCCAGTCTAA
* * *
33908963 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAATTCATCCCCAGTCTAA
33908989 G
1 G
33908990 ATCGGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAATTCATCCCCAGTCTAA
Found at i:33909234 original size:880 final size:866
Alignment explanation
Indices: 33907671--33909262 Score: 2093
Period size: 880 Copynumber: 1.8 Consensus size: 866
33907661 GCCCACACGC
* *
33907671 TCGTTTCGTGGTTGGCTTAGGCATACGGTGTTCATTCCATGTCTAAGCAAACGGAGTTCATTCCC
1 TCGTTTCGTGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCAAACGGAGTTCATTCCC
* ** * * ** *
33907736 AGTCTAAGATTGGACCAGACTAAGGGTTGTGGCAGTAGTACCAACAGCAGGATCGGCAGCACGTA
66 AGTCTAAGATCGGACCAGACTAAGGGTTGCAGCAGCAGGACCAACAGCAGGATCAACAGCACGCA
* * * * * * **
33907801 GGGGGGATCGAGCCGATCCCTGGCTTGCGCATTCTACCTCTCTAGCCGACTGAGCGCCTGCACAC
131 AGGGGGACCGAACCGATCCCTGGCTTACGCATGCTACCTCTCTAGCCGACTGAGCACCCACACAC
* *
33907866 TCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGTCGGACTGAGG
196 TCGTTTCATGGGTTAGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGCCGGACTGAGG
* ** * *
33907931 CTTGTGACAGCCAGACCGGTAGCGGGATCGGCAGCACTAGAGGGGGATCGGGTTGATCCCTGGCT
261 ATTGTGACAGCCAGACCGACAGCGGGATCGACAGCACTAGAGGAGGATCGGGTTGATCCCTGGCT
* *
33907996 TGCGCATTATGCCTCTCCGACCGACTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCAT
326 TGCACATTATGCCTCTCCGACCGACTGAGCACCCGTACGCTCGTTTCGTGGGTTGACTTAGGCAT
* *
33908061 ACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACAAAG
391 ACGGAATTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACAAAG
* * * * * ** * *
33908126 GGTTGCGGCAGCAGGATCGATAGCACGTAGGAGGGATCGGGACGATCCTTAGCTTGCGCATTTTG
456 GGTTGCGACAACAAGATCGATAGCACGTAAGAGGGATCAGGACGATCCCCAGCTTGCGCATTCTA
** * *
33908191 CCTCTCTGGCCGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCAT
521 CCTCTCTGGCCAACTAAGCGCCCGCACACCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCAT
* *
33908256 TCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCGGGACCAGCAACACGCATAGGGGGA
586 TCCATGTCTAAGCCCCAGTCAGACCGAGGGTTGTGGCAGCGGGACCAGCAACACGCAGAGGGGGA
* * * * *
33908321 TCGTACCGATCCTCAACTTGCACATTTTGCCTCTCCGGTCTGCTCAACCCCCGCATGCTCGTTTC
651 CCGTACCAATCCTCAACTTGCACATTATGCCTCTCCAGTCGGCTCAACCCCCGCATGCTCGTTTC
33908386 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCCATCTGAGATCAGACCGGACCGAAGGTTGTGA
716 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCCATCTGAGATCAGACCGGACCGAAGGTTGTGA
33908451 TAGCAGTATCGATAGTACGCAGGGGGGATCAGGCCGATCCTTGGCTTGTGCTTTCTGCCTCTCCG
781 TAGCAGTATCGATAGTACGCAGGGGGGATCAGGCCGATCCTTGGCTTGTGCTTTCTGCCTCTCCG
33908516 ATAGGCTAATTGCCCGTACAA
846 ATAGGCTAATTGCCCGTACAA
* *
33908537 TCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTTATTCCATGTCTAAGCATACGGAGTTCATTCC
1 TCGTTTCGT-GGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCAAACGGAGTTCATTCC
*** * ** *
33908602 CAGTCTAAGATCGGATTGGA-TCGAGGGTTGCAGCAGCAGGAGTACCAGCAGGATCAACAGCACG
65 CAGTCTAAGATCGGACCAGACT-AAGGGTTGCAGCAGCAGGACCAACAGCAGGATCAACAGCACG
* * * **
33908666 CAAGGGGGACCGAACCGAT-CTTCGGCTTACGCATGCTACGTCTCTGGCCGGTTGAGCACCCACA
129 CAAGGGGGACCGAACCGATCCCT-GGCTTACGCATGCTACCTCTCTAGCCGACTGAGCACCCACA
* * *
33908730 CGCTCGTTTCGTGGGTTAGCTTAGGCATAC-GTAGTTCATTCCATGTCTAAGCCCTAGCCGGA-T
193 CACTCGTTTCATGGGTTAGCTTAGGCATACAG-AGTTCATTCCATGTCTAAGCCCCAGCCGGACT
** * * * *
33908793 CGAGGATTGTGGTAG-TAGAACCGACAGCGGGATCGACAGCATGTAGCGGAGGATTGGGTTGATC
257 -GAGGATTGTGACAGCCAG-ACCGACAGCGGGATCGACAGCA-CTAGAGGAGGATCGGGTTGATC
* *
33908857 CTTGGCTTGCACATTATGCCTCTCGATCGGCCTCTCTGATCGGTTGAGCACCCGTACGCTCGTTT
319 CCTGGCTTGCACATTATGCCTCTC---C-G--AC-C-GA-C---TGAGCACCCGTACGCTCGTTT
*
33908922 CGTGGGTTGACTTAGGCATACGGAATTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCT
372 CGTGGGTTGACTTAGGCATACGGAATTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
* * * *
33908987 AAGATCGGATCAGACCAAGGGTTGCGATAACAAGATCGATAGCACGTAAGAGGGATCAGGCCGAT
437 AAGATCGGACCAGACAAAGGGTTGCGACAACAAGATCGATAGCACGTAAGAGGGATCAGGACGAT
**
33909052 CCCCAGCTTGCGCATTCTACCTCTCTGGCCAACTAAGCGCCCGTTCACCCGTTTCATGGGTTGGC
502 CCCCAGCTTGCGCATTCTACCTCTCTGGCCAACTAAGCGCCCGCACACCCGTTTCATGGGTTGGC
* * *
33909117 TTAGGCATAGGGAGTTCATTCGATGTCTAAGCCCCAGTCAGATCGAGGGTTGTGGCAGCGGGATC
567 TTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTTGTGGCAGCGGGACC
* * * ** ** *
33909182 -GACAGCACGTAGATGGGGACCG-AGCCAAT-CTCTGGCTTGTGCATTATGCCTCTTCAGTCGGC
632 AG-CAACACGCAGAGGGGGACCGTA-CCAATCCTC-AACTTGCACATTATGCCTCTCCAGTCGGC
*
33909244 TCAACGCCCGCATGCTCGT
694 TCAACCCCCGCATGCTCGT
33909263 AGGTTGACTT
Statistics
Matches: 611, Mismatches: 93, Indels: 30
0.83 0.13 0.04
Matches are distributed among these distances:
866 16 0.03
867 231 0.38
868 40 0.07
871 1 0.00
872 1 0.00
874 1 0.00
875 1 0.00
876 2 0.00
877 1 0.00
879 5 0.01
880 312 0.51
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (866 bp):
TCGTTTCGTGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCAAACGGAGTTCATTCCC
AGTCTAAGATCGGACCAGACTAAGGGTTGCAGCAGCAGGACCAACAGCAGGATCAACAGCACGCA
AGGGGGACCGAACCGATCCCTGGCTTACGCATGCTACCTCTCTAGCCGACTGAGCACCCACACAC
TCGTTTCATGGGTTAGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGCCGGACTGAGG
ATTGTGACAGCCAGACCGACAGCGGGATCGACAGCACTAGAGGAGGATCGGGTTGATCCCTGGCT
TGCACATTATGCCTCTCCGACCGACTGAGCACCCGTACGCTCGTTTCGTGGGTTGACTTAGGCAT
ACGGAATTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACAAAG
GGTTGCGACAACAAGATCGATAGCACGTAAGAGGGATCAGGACGATCCCCAGCTTGCGCATTCTA
CCTCTCTGGCCAACTAAGCGCCCGCACACCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCAT
TCCATGTCTAAGCCCCAGTCAGACCGAGGGTTGTGGCAGCGGGACCAGCAACACGCAGAGGGGGA
CCGTACCAATCCTCAACTTGCACATTATGCCTCTCCAGTCGGCTCAACCCCCGCATGCTCGTTTC
GTGGGTTGACTTAGGCATACGGAGTTCATTCCCCATCTGAGATCAGACCGGACCGAAGGTTGTGA
TAGCAGTATCGATAGTACGCAGGGGGGATCAGGCCGATCCTTGGCTTGTGCTTTCTGCCTCTCCG
ATAGGCTAATTGCCCGTACAA
Found at i:33909597 original size:26 final size:26
Alignment explanation
Indices: 33909561--33909613 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
33909551 GTTGGCTTAG
33909561 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
33909587 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
33909613 G
1 G
33909614 ATCAGACCTA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:33911067 original size:26 final size:26
Alignment explanation
Indices: 33911037--33911092 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
33911027 TGGGTTGACT
*
33911037 TAAGCATACGGAGTTCATCCCCAGTC
1 TAAGCATACAGAGTTCATCCCCAGTC
* *
33911063 TAAGCATATAGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTCATCCCCAGTC
33911089 TAAG
1 TAAG
33911093 ATCAAACCGG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATCCCCAGTC
Found at i:33911573 original size:26 final size:26
Alignment explanation
Indices: 33911521--33911573 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
33911511 GTTGGCTTAG
*
33911521 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTATAA
*
33911547 GCATATGGAGTTCATTCCCA-GTATAA
1 GCATACGGAGTTCATT-CCATGTATAA
33911573 G
1 G
33911574 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTATAA
Found at i:33912819 original size:26 final size:26
Alignment explanation
Indices: 33912789--33912841 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
33912779 GTTGACTTAG
*
33912789 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCACTCTAA
* *
33912815 GCATATGGAGTTCATTCCCACTCTAA
1 GCATACGGAGTTCATCCCCACTCTAA
33912841 G
1 G
33912842 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCACTCTAA
Found at i:33913167 original size:26 final size:26
Alignment explanation
Indices: 33913131--33913183 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
33913121 GTTGGATTAG
33913131 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
33913157 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
33913183 G
1 G
33913184 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:33913530 original size:26 final size:26
Alignment explanation
Indices: 33913500--33913550 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
33913490 GTTGACTTAG
*
33913500 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
33913526 GCATACAGAGTTCATTCCCAGTCTA
1 GCATACAGAGTTCATCCCCAGTCTA
33913551 GGATCGGACC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.29, G:0.18, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:33913619 original size:356 final size:350
Alignment explanation
Indices: 33912748--33913869 Score: 987
Period size: 356 Copynumber: 3.2 Consensus size: 350
33912738 GCCTCTCTGA
* *
33912748 TTGGCTGAGCGCTT-GCACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTC
1 TTGG-TGAGCG-TTCGCATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTC
* * * * * *
33912812 TAAGCATATGGAGTTCATTCCCACTCTAAGATCAGACCGGACCGAGGGTTACGATAGCAGGATCA
64 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGGGGGTTGCGATAGCAGGATCG
* ** * * **
33912877 ACAGCACGTA-AGGGGATCAGATCGATCCCCGGCTTATGCATTCTGCCTCTCCGATC-AGTTGAG
129 ACAGCACGTAGGGGGGATCAGGCCGATCCCTGACTTATGCATTCTGCCTCTCCGGCCGA-TTGAG
** *
33912940 CACCCACACGCCCGTTTTGTGGGTTGAATTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG
193 CACCCACACGCCCGTTTCATGGGTTGACTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG
* * * * * *
33913005 TC-AGATCAAGGGTTGTGACAGCTGGACCGACAGCACACAGAGGGGGATCGGGCTGATCCTCGGC
258 TCGAGATCAAGGGTTGTGACAGCAGGACAGACAGCACACAGAGGGAGACCGGACTGATCCTCAGC
*
33913069 TTGCGCATTTTGCCTCTCCAGTCGGCTC
323 TTGCGCATTATGCCTCTCCAGTCGGCTC
*** * * *
33913097 ------AGCACCCGTATGCTCGTTTCGTGGGTTGGA-TTAGGCATACGGAGTTCAT-TCCATGTC
1 TTGGTGAGCGTTCGCATGCTCGTTTCATGGGTT-GACTTAGGCATACGGAGTTCATCCCCA-GTC
* * * *
33913154 TAAGCATACGGAGTTCATTCCTAGTCTAAGATCGGATCAGACCGACGATTGCGGTAGCAGGACCA
64 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCG--G---G-GGTTGC--G---A
* * * * * *
33913219 GCAGCAGGATCGACAGCTCGTAGGGGGTGATCGGGCCAATCCCTGACTTACGCATTCTACCTCTC
118 -TAGCAGGATCGACAGCACGTAGGGGG-GATCAGGCCGATCCCTGACTTATGCATTCTGCCTCTC
* * ** * *
33913284 CGGCCGATTGAGCCCCCGCACGATCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATG
181 CGGCCGATTGAGCACCCACACGCCCGTTTCATGGGTTGACTTAGGCATAGGGAGTTCATTCCATG
* * *
33913349 TTTAAGCCACAGTCGA-ATCAAGGGTTGTGGCAGCAGGACTAG-CAGCACACAGAGGGAGACCGG
246 TCTAAGCCCCAGTCGAGATCAAGGGTTGTGACAGCAGGAC-AGACAGCACACAGAGGGAGACCGG
* * * *
33913412 ATTGATCC-CTAGCTTGTGCATTATGCCTCTTCGGTCGGCCCTTTC
310 ACTGATCCTC-AGCTTGCGCATTATGCCTCTCCAGTCGG--C--TC
33913457 GGTTGGTTGAGCGTTCGCATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGT
1 --TTGG-TGAGCGTTCGCATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGT
* * *
33913522 CTAAGCATACAGAGTTCATTCCCAGTCTAGGATCGGACCGGATCGGGGGTTGCGATAGCAGGATC
63 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGGGGGTTGCGATAGCAGGATC
* * * * * * *
33913587 GACAACACGGAGGGGGGA-CATGGCCGATCCCTGACTTGTGCATTCTGCCTTTTCGGCTGACTGA
128 GACAGCACGTAGGGGGGATCA-GGCCGATCCCTGACTTATGCATTCTGCCTCTCCGGCCGATTGA
** * * * *
33913651 GTGCCCTCATGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCAAGTCTAAGCCCCA
192 GCACCCACACGCCCGTTTCATGGGTTGACTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA
* * * * * * * * * * * *
33913716 GTCG-GATCGAGTGCTGTGCCAGCGGGACCGACAGCA-AGCAGAGGGGGACTGGGCCGATCCCCG
257 GTCGAGATCAAGGGTTGTGACAGCAGGACAGACAGCACA-CAGAGGGAGACCGGACTGATCCTCA
* *
33913779 GCTTGCGCATTATGCCTCTTCAGTCGACTC
321 GCTTGCGCATTATGCCTCTCCAGTCGGCTC
* ** * * * * *
33913809 ------AACGCCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACGAAGTTCATTCCCAGTCTA
1 TTGGTGAGCGTTCGCATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTA
33913868 AG
66 AG
33913870 ATCGGATCAG
Statistics
Matches: 617, Mismatches: 115, Indels: 88
0.75 0.14 0.11
Matches are distributed among these distances:
341 3 0.00
342 79 0.13
343 55 0.09
347 1 0.00
348 4 0.01
350 1 0.00
352 2 0.00
353 1 0.00
354 19 0.03
355 7 0.01
356 320 0.52
357 26 0.04
358 2 0.00
360 2 0.00
361 1 0.00
363 5 0.01
364 1 0.00
367 1 0.00
368 2 0.00
369 82 0.13
370 3 0.00
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.25
Consensus pattern (350 bp):
TTGGTGAGCGTTCGCATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTA
AGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGGGGGTTGCGATAGCAGGATCGAC
AGCACGTAGGGGGGATCAGGCCGATCCCTGACTTATGCATTCTGCCTCTCCGGCCGATTGAGCAC
CCACACGCCCGTTTCATGGGTTGACTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCG
AGATCAAGGGTTGTGACAGCAGGACAGACAGCACACAGAGGGAGACCGGACTGATCCTCAGCTTG
CGCATTATGCCTCTCCAGTCGGCTC
Found at i:33914057 original size:26 final size:26
Alignment explanation
Indices: 33914005--33914055 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
33913995 TTCGGCATAC
*
33914005 GGAGTTCATTCCATGTTTAAGCATTT
1 GGAGTTCATTCCATGTCTAAGCATTT
33914031 GGAGTTCATTCCCA-GTCTAAG-ATTT
1 GGAGTTCATT-CCATGTCTAAGCATTT
33914056 TGAGCCACGG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
25 4 0.17
26 16 0.70
27 3 0.13
ACGTcount: A:0.24, C:0.18, G:0.20, T:0.39
Consensus pattern (26 bp):
GGAGTTCATTCCATGTCTAAGCATTT
Found at i:33915036 original size:158 final size:158
Alignment explanation
Indices: 33914751--33915085 Score: 424
Period size: 158 Copynumber: 2.1 Consensus size: 158
33914741 AAGCATACAC
** * * * *
33914751 AGTTCATTCCCAGTCTAAGATTGGATTGGACCAAGGGTTGTAACAGCAGGATCGACAGCACGCAT
1 AGTTCATTCCCAGTCTAAGATCAGACTGGACCAAGGGTTGCAACAGCAAGATCGACAGCACGCAG
* * * *
33914816 GGGGGACCGAGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGGCCGGCTTAGCGCCTGCACGCT
66 GGGGGACCGAGCCAATCCCCGGCTTACGCATTCTACCTCTCAGGCCGGCTGAGCGCCTGCACGCT
33914881 CGTTTCATGGGTTGAG-TTATGCATACGG
131 CGTTTCATGGGTTG-GCTTATGCATACGG
* * ** * * *
33914909 AGTTCATTCCCAGTCTAAGATCAGACTGGATCAATGGTTGCGGCAGCAAGATTGATAGCACGTAG
1 AGTTCATTCCCAGTCTAAGATCAGACTGGACCAAGGGTTGCAACAGCAAGATCGACAGCACGCAG
* * * *
33914974 GGGGGACCGGGTCAATCCCCGGCTTGCGCATTCTACCTCTCAGGGCGGCTGAGCGCAC-GCACGC
66 GGGGGACCGAGCCAATCCCCGGCTTACGCATTCTACCTCTCAGGCCGGCTGAGCGC-CTGCACGC
*
33915038 TCGTTTCGTGGGTTGGCTTATGCATACGG
130 TCGTTTCATGGGTTGGCTTATGCATACGG
33915067 AGTTCATT-CCATGTCTAAG
1 AGTTCATTCCCA-GTCTAAG
33915086 CATACGGAGT
Statistics
Matches: 152, Mismatches: 22, Indels: 6
0.84 0.12 0.03
Matches are distributed among these distances:
157 4 0.03
158 147 0.97
159 1 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (158 bp):
AGTTCATTCCCAGTCTAAGATCAGACTGGACCAAGGGTTGCAACAGCAAGATCGACAGCACGCAG
GGGGGACCGAGCCAATCCCCGGCTTACGCATTCTACCTCTCAGGCCGGCTGAGCGCCTGCACGCT
CGTTTCATGGGTTGGCTTATGCATACGG
Found at i:33915095 original size:26 final size:26
Alignment explanation
Indices: 33915059--33915111 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
33915049 GTTGGCTTAT
33915059 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
33915085 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
33915111 G
1 G
33915112 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:33915815 original size:26 final size:26
Alignment explanation
Indices: 33915779--33915831 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
33915769 GTTGACTTAG
33915779 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
33915805 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
33915831 G
1 G
33915832 ATCGAATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:33916183 original size:26 final size:26
Alignment explanation
Indices: 33916147--33916199 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
33916137 GTTGACTTAG
*
33916147 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
33916173 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
33916199 G
1 G
33916200 ATCGGTGGGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:33916432 original size:367 final size:368
Alignment explanation
Indices: 33915738--33916433 Score: 907
Period size: 367 Copynumber: 1.9 Consensus size: 368
33915728 GTCTCTCTGG
33915738 TCGGCTGAGCGCCTGCACGCTCGTTTTATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCT
1 TCGGCTGAGCGCCTGCACGCTCGTTTTATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCT
* * * * *
33915803 AAGCATACGGAGTTCATTCCCAGTCTAAGATCGAATCGGATCAAGGGTTGCGGTAGCAGGATCGG
66 AAGCATACGGAGTTCATTCCCAATCTAAGATCGAATCGGACCAAGGGTTGCAGCAGCAGGATAGG
* * * * * ** *
33915868 TAGCACGCAGGGGGGATCGAGCCGATCCCCTGCTTGTACATTCTACCTCTCCGGTCGGTTGAGTG
131 CAGCACGCAAGGGGGACCGAGCCGATCCCCTGCTTGCACATTCTACCTCTCCAGTCGACTGAGCG
* * * * * * **
33915933 CCCGCACATTCGTTTCATGGGTTGGTTTAGGCGTACGGAGTTCATTCTATGTCTAAGCCCCAGTC
196 CCCGCACATTCGTTTCATAGGTTGGCTTAGGCATACAGAGTACATTCCATGTCTAAGCCCCAACC
* ** * *
33915998 GGATCGAGGGTTGTGGTAGTAGGACTGACAACGGGATCGGCAGCACATAGAGGGGGATCGAGCTG
261 GGATCAAGGGTTGTGGTAACAGGACCGACAACGGGATCGGCAGCACACAGAGGGGGATCGAGCTG
33916063 ATCCCCGACTTATGCATTATGCCTCTCCGACCGACCTCTCCGA
326 ATCCCCGACTTATGCATTATGCCTCTCCGACCGACCTCTCCGA
* * *
33916106 TCGGCTGAGCG-CTCGTATGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTC
1 TCGGCTGAGCGCCT-GCACGCTCGTTTTATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTC
* * *
33916170 TAAGCATACGGAGTTCATTCCCAATCTAAGATCG-GTGGGACCGAGGGTTGCAGCAGCAGGATAG
65 TAAGCATACGGAGTTCATTCCCAATCTAAGATCGAATCGGACCAAGGGTTGCAGCAGCAGGATAG
* * ** *
33916234 GCAGCACGCAAGGGGGACCGGGTCGAT-CCCTGGCTTGCGTATTCTACCTCTTCAGTCGACTGAG
130 GCAGCACGCAAGGGGGACCGAGCCGATCCCCT-GCTTGCACATTCTACCTCTCCAGTCGACTGAG
* *
33916298 CGCCCGCACGCTT-GTTTCGTAGGTTGGCTTAGGCATACAGAGTACATTCCATGTCTAAGCCCCA
194 CGCCCGCAC-ATTCGTTTCATAGGTTGGCTTAGGCATACAGAGTACATTCCATGTCTAAGCCCCA
* * * ** * *
33916362 ACCGGA-CTAATGGTTGTGGTAACAGGACCGACAGCGGGATCGGTAGCATGCAGAGGTGGATCGG
258 ACCGGATC-AAGGGTTGTGGTAACAGGACCGACAACGGGATCGGCAGCACACAGAGGGGGATCGA
33916426 GCTGATCC
322 GCTGATCC
33916434 TCAACCTGTG
Statistics
Matches: 278, Mismatches: 46, Indels: 9
0.83 0.14 0.03
Matches are distributed among these distances:
366 5 0.02
367 180 0.65
368 93 0.33
ACGTcount: A:0.20, C:0.25, G:0.30, T:0.24
Consensus pattern (368 bp):
TCGGCTGAGCGCCTGCACGCTCGTTTTATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCT
AAGCATACGGAGTTCATTCCCAATCTAAGATCGAATCGGACCAAGGGTTGCAGCAGCAGGATAGG
CAGCACGCAAGGGGGACCGAGCCGATCCCCTGCTTGCACATTCTACCTCTCCAGTCGACTGAGCG
CCCGCACATTCGTTTCATAGGTTGGCTTAGGCATACAGAGTACATTCCATGTCTAAGCCCCAACC
GGATCAAGGGTTGTGGTAACAGGACCGACAACGGGATCGGCAGCACACAGAGGGGGATCGAGCTG
ATCCCCGACTTATGCATTATGCCTCTCCGACCGACCTCTCCGA
Found at i:33918346 original size:26 final size:26
Alignment explanation
Indices: 33918317--33918369 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
33918307 CCAGTCTGAT
33918317 CTTAGACT-GGGAATGAACTCCATATG
1 CTTAGACTAGGG-ATGAACTCCATATG
* *
33918343 CTTAGACTAGGGATTAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCATATG
33918369 C
1 C
33918370 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCATATG
Found at i:33919080 original size:26 final size:26
Alignment explanation
Indices: 33919042--33919094 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33919032 GGCTCAAAAT
*
33919042 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
33919068 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
33919094 C
1 C
33919095 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:33919572 original size:26 final size:26
Alignment explanation
Indices: 33919543--33919595 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33919533 CTGGCCCGAT
*
33919543 CTTAGACT-GGGAATGAACTCTGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
33919569 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
33919595 C
1 C
33919596 CTAAGTGAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:33921651 original size:26 final size:26
Alignment explanation
Indices: 33921613--33921665 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
33921603 GGCTCATAAT
33921613 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
33921639 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
33921665 C
1 C
33921666 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:33922150 original size:26 final size:26
Alignment explanation
Indices: 33922114--33922166 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
33922104 CTAATCCGAT
33922114 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
33922140 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
33922166 C
1 C
33922167 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:33923680 original size:26 final size:26
Alignment explanation
Indices: 33923642--33923694 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33923632 CCGGTCTGAT
33923642 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
33923668 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
33923694 C
1 C
33923695 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:33924327 original size:159 final size:156
Alignment explanation
Indices: 33923972--33924435 Score: 452
Period size: 159 Copynumber: 2.9 Consensus size: 156
33923962 AACTCTGTAT
* * ** *
33923972 GCTTAGACATGGAACGAAC-TCCGTATGCCAAAGCCAACCCATTAAACAAGCGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTTCC-TATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCA
* * * *
33924036 GCCAGCCGGAGAGGCAGGATGCGCAAGCCAGGGACCGACCCAGTCCCCCCTGCGTGCTGTC-GAT
65 GCGA-CCGGAGAGGCAGAATGCGCAAG-CGGGGATCGACCCAGTCCCCCCTGCGTGCTGTCAG-T
* *
33924100 CCTGCTACTGCAACCCTCGGTTCCATCCAA
127 CCCGCTACTGAAACCCTCGGTTCCATCCAA
* * * * * *
33924130 TCTTAGAC-TGGGAATGAACTTCGTATGCCTAAGTCAACCCACAAAATGAGTGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTTCCTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCA
* *
33924194 GCTGACCGGAGAGGCATAATGCGCAAGTCGGGGATCGACCCAGTCGCCCTCTGCGTGCTGTCAGT
65 GC-GACCGGAGAGGCAGAATGCGCAAG-CGGGGATCGACCCAGTC-CCCCCTGCGTGCTGTCAGT
* * ****
33924259 CCCGCTGC-GAAAACCCTCGG-TCTTATTGGG
127 CCCGCTACTG-AAACCCTCGGTTC-CATCCAA
* * * ** *
33924289 GCTTAGACATGGAGTGAACTTCCTATGCCTAAGCCAACCCACGAAACGGGCGTTTGGGCGATCAG
1 GCTTAGACATGGAATGAACTTCCTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAG
** * *
33924354 CCGGTCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCAGTCCCCCCTGCGTGCTGCCAATCC
66 -CGACCGGAGAGGCAGAATGCGCAAGC-GGGGATCGACCCAGTCCCCCCTGCGTGCTGTCAGTCC
* *
33924419 CGCTACCGCAACCCTCG
129 CGCTACTGAAACCCTCG
33924436 ATCTGGTCCG
Statistics
Matches: 249, Mismatches: 46, Indels: 22
0.79 0.15 0.07
Matches are distributed among these distances:
157 1 0.00
158 120 0.48
159 125 0.50
160 3 0.01
ACGTcount: A:0.23, C:0.32, G:0.28, T:0.18
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTTCCTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAG
CGACCGGAGAGGCAGAATGCGCAAGCGGGGATCGACCCAGTCCCCCCTGCGTGCTGTCAGTCCCG
CTACTGAAACCCTCGGTTCCATCCAA
Found at i:33926383 original size:159 final size:159
Alignment explanation
Indices: 33925956--33926528 Score: 413
Period size: 158 Copynumber: 3.6 Consensus size: 159
33925946 ACTCCATATG
* *
33925956 CTTAGACATGGAATGAACTC-CGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGAGCTCA-
1 CTTAGACATGGAATGAACTCGC-TATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * *
33926019 ACTGATTGGAGAGGCAGAATGTGCAAGCCAGGGATCGACCCGATCCCCC-CTACGTGCTGTTGAT
65 CCAG-TCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCTCTACATCCTGTCGAT
* * **
33926083 CCTGCTACCGCAACCGTTGGTCCGGCTCAAT
129 CCTGCTACCACAACCCTCAGTCCGGCTCAAT
* * * * * *
33926114 CTTAGATC-GGGAATGAACTTCG-TATGCCTAAGTCAACCCAAC-AAACAAGGGTGCGGGCACTG
1 CTTAGA-CATGGAATGAAC-TCGCTATGCCTAAGCCAACCC-ACGAAACGAGCGTGCGGGCGCTC
* * * * * * *
33926176 AGCCAG-CTGGAGAGGTATAATGCGCAAGTC-GAGGATTGACTCGGTCCCCCTCTGCATCCTGTC
63 AGCCAGTC-GGAGAGGCAGAATGCGCAAGCCAG-GGATCGACCCGATCCCCCTCTACATCCTGTC
* ***
33926239 GGTCCTGCTACCACAACCCTCAGTCCGGCTGGGGT
126 GATCCTGCTACCACAACCCTCAGTCCGGCT-CAAT
* *
33926274 -TTAGACATGGAATGAACTCGCTATACCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCGCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * *
33926338 CAGTCAGAGAGGCA-ACATGCACAAGCCAGGGATCAACCCGATCCCCCT-TGCGTGCTATCGATC
66 CAGTCGGAGAGGCAGA-ATGCGCAAGCCAGGGATCGACCCGATCCCCCTCTACATCCTGTCGATC
* ** ** *
33926401 TTGCTACCTTAACCCTC-GATCTAG-TCTGAT
130 CTGCTACCACAACCCTCAG-TCCGGCTC-AAT
* * ** * * * *
33926431 CTTAGAC-GGGAATGAACTCTG-TATGCCTAAGTCAAGTCACGAAATGATCATGAGGGCGCTCAG
1 CTTAGACATGGAATGAACTC-GCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * *
33926494 CC-GATCGAAGAGGCATAATGTGCAAGCCAGGGATC
65 CCAG-TCGGAGAGGCAGAATGCGCAAGCCAGGGATC
33926529 AGCCTGGTCT
Statistics
Matches: 325, Mismatches: 69, Indels: 43
0.74 0.16 0.10
Matches are distributed among these distances:
156 1 0.00
157 78 0.24
158 123 0.38
159 120 0.37
160 3 0.01
ACGTcount: A:0.26, C:0.28, G:0.26, T:0.20
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCGCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CAGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCTCTACATCCTGTCGATCC
TGCTACCACAACCCTCAGTCCGGCTCAAT
Found at i:33926729 original size:26 final size:26
Alignment explanation
Indices: 33926693--33926745 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
33926683 CCAGCCTGAT
33926693 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
*
33926719 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
33926745 C
1 C
33926746 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.23, C:0.19, G:0.30, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCGTATG
Found at i:33927354 original size:26 final size:26
Alignment explanation
Indices: 33927316--33927368 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33927306 GGCTCAAAAT
33927316 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTTCATATG
*
33927342 CTTAGACAT-GGAATGAACTTCGTATG
1 CTTAGAC-TGGGAATGAACTTCATATG
33927368 C
1 C
33927369 CTAAGCGAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCATATG
Found at i:33927633 original size:158 final size:157
Alignment explanation
Indices: 33927342--33927676 Score: 368
Period size: 158 Copynumber: 2.1 Consensus size: 157
33927332 ACTTCATATG
* * * ** * * *
33927342 CTTAGACATGGAATGAACTTCGTATGCCTAAGCGAACCCACGAAATGAGTGTGCGATCGCTTAGC
1 CTTAGAC-TGGAATGAACTCCGTACGCATAAGCGAACCCACGAAACAAGCGTGCGAGCGCTAAGC
* * ** * *
33927407 TGGTCGGAGAGGCAGAATGCACAAGTTGAGGATCGACCCGATCCCACCTGCGTGCTGTCGATCCT
65 TGGCCGAAGAGGCAGAATGCACAAGCCGAGGATCGACCCGATCCCACCTGCATGCTGCCGATCCT
*
33927472 GCTGTCACAACCCTCAGTCCGATTCGAT
130 GCTGTCACAACCCTCAGTCCGATCCGAT
33927500 CTTAGACTGGGAATGAACTCCGTACGCATAAGTC-AACCCACGAAACAAGCGTGCGAGCGCTAAG
1 CTTAGACT-GGAATGAACTCCGTACGCATAAG-CGAACCCACGAAACAAGCGTGCGAGCGCTAAG
* * * * * *
33927564 TTGGCCGAAGAGGCATAATGCGCAAGCCGGGGATTGACCCGATCCC-CTCTGCATGTTGCCGATC
64 CTGGCCGAAGAGGCAGAATGCACAAGCCGAGGATCGACCCGATCCCAC-CTGCATGCTGCCGATC
** * *
33927628 CTGCTGTTGCAACCCTCTGTTCGATCCGAT
128 CTGCTGTCACAACCCTCAGTCCGATCCGAT
* *
33927658 CCTAGATTAGGAATGAACT
1 CTTAGACT-GGAATGAACT
33927677 TTGTATGCTT
Statistics
Matches: 146, Mismatches: 28, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
157 2 0.01
158 143 0.98
159 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.26, T:0.22
Consensus pattern (157 bp):
CTTAGACTGGAATGAACTCCGTACGCATAAGCGAACCCACGAAACAAGCGTGCGAGCGCTAAGCT
GGCCGAAGAGGCAGAATGCACAAGCCGAGGATCGACCCGATCCCACCTGCATGCTGCCGATCCTG
CTGTCACAACCCTCAGTCCGATCCGAT
Found at i:33928419 original size:26 final size:26
Alignment explanation
Indices: 33928381--33928433 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
33928371 GGCTCAAAAT
33928381 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
33928407 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
33928433 C
1 C
33928434 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:33928743 original size:26 final size:26
Alignment explanation
Indices: 33928707--33928759 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
33928697 CTGGTTTGAT
*
33928707 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
* *
33928733 CTTAGAATGGGGATGAACTCTGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
33928759 C
1 C
33928760 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Found at i:33929467 original size:26 final size:26
Alignment explanation
Indices: 33929429--33929481 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33929419 GGCTCAAAAT
*
33929429 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
33929455 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
33929481 C
1 C
33929482 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:33929815 original size:159 final size:157
Alignment explanation
Indices: 33929627--33930204 Score: 431
Period size: 159 Copynumber: 3.7 Consensus size: 157
33929617 TCTTCGACTG
* * * *
33929627 GGAATGAACTCCGTATGCATAAGTCAACCCACAAAACGAGCGTGCGGGCGTTGAGCCGACCGAAG
1 GGAATGAACTCCCTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTGAGCCGACCGAAG
* * * * *
33929692 AGGCATAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTCTGCATGCTGCTGATCCCACTGCCAC
66 AGGCAGAATGCACAAGCCAGGGATCGACCCGATCCCCCTCTGCGTGCTGCTGATCCC-CTGCCAC
33929757 AACCCTTGATCTAGCTGGGGCTTAGACAT
130 AACCCTTGATCT-GCTGGGGCTTAGACAT
* * * * * * * * **
33929786 GGAATGAACTCCCTATGCCTAAGCCAACCCACGCAATGAGCGCGCGGGAGCTTAGCTGGCCGTTG
1 GGAATGAACTCCCTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTGAGCCGACCGAAG
** ** * * * *
33929851 AGGCAGAATGCGTAAGTTAGGGATC--CGCCTAGTCCCCC-CTACGTGCTG-TCAAT--CCTGCT
66 AGGCAGAATGCACAAGCCAGGGATCGAC-CCGA-TCCCCCTCTGCGTGCTGCT-GATCCCCTGCC
* **
33929910 ATGCAACCC-TCAGTCTGGTCT-GATCTTAGAC-T
128 A--CAACCCTTGA-TCT-G-CTGGGGCTTAGACAT
* * * * * * * *
33929942 GGGAATGAACTTCGTATGCATAAGTCAACCCATGAAATGACCGTGCGGGTGCTGAGCC-AGTCGA
1 -GGAATGAACTCCCTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTGAGCCGA-CCGA
* * * * * *
33930006 AGAGGCATAATGCACAAGTCAGGGATCGGCCCGATCCCGCTCTGCGTGCTGCCGGTCCCGCTGCC
64 AGAGGCAGAATGCACAAGCCAGGGATCGACCCGATCCCCCTCTGCGTGCTGCTGATCCC-CTGCC
* * *
33930071 ACAACCCTCGGTCCTGTTGGGGCTTAGACAT
128 ACAACCCTTGAT-CTGCTGGGGCTTAGACAT
* * * * * * ** *
33930102 GGAATGAACTCCCTATTCCTAAGCCAACCCATGAAACGGGAGTGCGGGCGCTCAGCCGGTCGGAG
1 GGAATGAACTCCCTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTGAGCCGACCGAAG
*
33930167 AGGCAGAATGCATAAGCCAGGGATC-AGCCCGATCCCCC
66 AGGCAGAATGCACAAGCCAGGGATCGA-CCCGATCCCCC
33930205 ATGTGTGCTA
Statistics
Matches: 318, Mismatches: 79, Indels: 44
0.72 0.18 0.10
Matches are distributed among these distances:
155 5 0.02
156 4 0.01
157 95 0.30
158 28 0.09
159 177 0.56
160 4 0.01
161 5 0.02
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (157 bp):
GGAATGAACTCCCTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTGAGCCGACCGAAG
AGGCAGAATGCACAAGCCAGGGATCGACCCGATCCCCCTCTGCGTGCTGCTGATCCCCTGCCACA
ACCCTTGATCTGCTGGGGCTTAGACAT
Found at i:33930033 original size:316 final size:319
Alignment explanation
Indices: 33929454--33930195 Score: 857
Period size: 316 Copynumber: 2.3 Consensus size: 319
33929444 AACTCTGTAT
* * * * *
33929454 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAACGAGTGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGCACGGGAGCTCAG
* * * *
33929519 TAGGCCGGAGAGGCCGAATGCACAAGCCAGGGATCAGCTTGGTCCCCCCTGCATACTGTCAATCC
66 TAGGCCGGAGAGGCAGAATGCACAAGCCAGGGATCAGCCTAGTCCCCCCTACATACTGTCAATCC
* * *
33929584 TGCTGTGGCAACCCTCGGTCTGATCTGATCTGATCTTCGACTGGGAATGAACTCCGTATGCATAA
131 TGCTATGGCAACCCTCAGTCTG---TGATCTGATCTTAGACTGGGAATGAACTCCGTATGCATAA
* * * *
33929649 GTCAACCCACAAAACGAGCGTGCGGGCGTTGAGCCGACCGAAGAGGCATAATGCGCAAGCCGGGG
193 GTCAACCCACAAAACGACCGTGCGGGCGCTGAGCCGACCGAAGAGGCATAATGCACAAGCCAGGG
* * *
33929714 ATCGACCCGGTCCCCCTCTGCATGCTGCTGATCCCACTGCCACAACCCTTGAT-CTAGCTGGG
258 ATCGACCCGATCCCCCTCTGCATGCTGCCGATCCCACTGCCACAACCCTCGATCCT-GCTGGG
** * * *
33929776 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGCAATGAGCGCGCGGGAGCTTAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGCACGGGAGCTCAG
** ** ** * * *
33929841 CT-GGCCGTTGAGGCAGAATGCGTAAGTTAGGGATCCGCCTAGTCCCCCCTACGTGCTGTCAATC
66 -TAGGCCGGAGAGGCAGAATGCACAAGCCAGGGATCAGCCTAGTCCCCCCTACATACTGTCAATC
*
33929905 CTGCTAT-GCAACCCTCAGTCTG-G-TCTGATCTTAGACTGGGAATGAACTTCGTATGCATAAGT
130 CTGCTATGGCAACCCTCAGTCTGTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCATAAGT
** * * * *
33929967 CAACCCATGAAATGACCGTGCGGGTGCTGAGCC-AGTCGAAGAGGCATAATGCACAAGTCAGGGA
195 CAACCCACAAAACGACCGTGCGGGCGCTGAGCCGA-CCGAAGAGGCATAATGCACAAGCCAGGGA
* * * * * * *
33930031 TCGGCCCGATCCCGCTCTGCGTGCTGCCGGTCCCGCTGCCACAACCCTCGGTCCTGTTGGG
259 TCGACCCGATCCCCCTCTGCATGCTGCCGATCCCACTGCCACAACCCTCGATCCTGCTGGG
* ** * * ** *
33930092 GCTTAGACATGGAATGAACTCCCTATTCCTAAGCCAACCCATGAAACGGGAGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGCACGGGAGCTCAG
** * *
33930157 CCGGTCGGAGAGGCAGAATGCATAAGCCAGGGATCAGCC
66 TAGGCCGGAGAGGCAGAATGCACAAGCCAGGGATCAGCC
33930196 CGATCCCCCA
Statistics
Matches: 352, Mismatches: 64, Indels: 14
0.82 0.15 0.03
Matches are distributed among these distances:
315 1 0.00
316 223 0.63
317 3 0.01
321 14 0.04
322 110 0.31
323 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (319 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGCACGGGAGCTCAG
TAGGCCGGAGAGGCAGAATGCACAAGCCAGGGATCAGCCTAGTCCCCCCTACATACTGTCAATCC
TGCTATGGCAACCCTCAGTCTGTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTC
AACCCACAAAACGACCGTGCGGGCGCTGAGCCGACCGAAGAGGCATAATGCACAAGCCAGGGATC
GACCCGATCCCCCTCTGCATGCTGCCGATCCCACTGCCACAACCCTCGATCCTGCTGGG
Found at i:33930412 original size:184 final size:184
Alignment explanation
Indices: 33930092--33930461 Score: 440
Period size: 184 Copynumber: 2.0 Consensus size: 184
33930082 TCCTGTTGGG
* * ** *
33930092 GCTTAGACATGGAATGAACTCCCTATTCCTAAGCCAACCCATGAAACGGGAGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATAAAACAAGAGTGCGGGCACTCAG
* * **
33930157 CCGGTCGGAGAGGCAGAATGCATAAGCCAGGGATCAGCCCGATCCCCCATGTGTGCTACCGATTT
66 CCGGTCGGAGAGGCAGAATGCATAAGCCAGGGATCAGCCCGATCCCCCATGCGTCCTACCGATCC
* *
33930222 TGCTGTCACAACCCTCAATACGGTCCAATCTTTGACTGAGAATGAACTCCGTAT
131 TGCTGTCACAACCCTCAATACGGTCCAATCTTAGACTGAGAAAGAACTCCGTAT
* *
33930276 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAACAAGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATAAAACAAGAGTGCGGGCACTCAG
* * * ** * **
33930341 TCGG-CTGGAGAGGCAGAATGCGTAAG-CTGAGGATCAGTTCGGTCCCTCC-TGCGTCCTGTCGA
66 CCGGTC-GGAGAGGCAGAATGCATAAGCCAG-GGATCAGCCCGATCCC-CCATGCGTCCTACCGA
* * * * * * *
33930403 TCCTGCTGTCGCAACCCTCGATGCGTTCCGATCTTAGATTGGGAAAGAACTCCGTAT
128 TCCTGCTGTCACAACCCTCAATACGGTCCAATCTTAGACTGAGAAAGAACTCCGTAT
33930460 GC
1 GC
33930462 ATAAGTTGAC
Statistics
Matches: 155, Mismatches: 28, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
183 3 0.02
184 150 0.97
185 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.22
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATAAAACAAGAGTGCGGGCACTCAG
CCGGTCGGAGAGGCAGAATGCATAAGCCAGGGATCAGCCCGATCCCCCATGCGTCCTACCGATCC
TGCTGTCACAACCCTCAATACGGTCCAATCTTAGACTGAGAAAGAACTCCGTAT
Found at i:33930766 original size:157 final size:157
Alignment explanation
Indices: 33930277--33930776 Score: 481
Period size: 158 Copynumber: 3.2 Consensus size: 157
33930267 ACTCCGTATG
**
33930277 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAACAAGCGTGCGGGCACTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCACTCAGT
* * * * * * *
33930342 CGGCTGGAGAGGCAGAATGCGTAAGCT-GAGGATCAGTTCGGTCCCTCCTGCGTCCTGTCGATCC
66 CGGCCGGAGAGGCAGAATGCGCAAGCTAG-GGATCGGCTCAGTCCCTCTTGCGTGCTGTCGATCC
* * *
33930406 TGCTGTCGCAACCCTCGATGCGTTCCGAT
130 TGCTGCCACAACCCTCGAT-CGGTCCGAT
* * * *** * *
33930435 CTTAGA-TTGGGAAAGAACTCCGTATGCATAAGTTGACCCACGAAACAAGCGTGCGGGTACTGA-
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCACTCAG
* * * * * *
33930498 TTGGTCGAAGAGGCATAATGCGCAAG-TCAGGGATTGGCTCAGTCCCTCTGTGCGTGCTGTCGGT
65 TCGGCCGGAGAGGCAGAATGCGCAAGCT-AGGGATCGGCTCAGTCCCTCT-TGCGTGCTGTCGAT
* * * ** **
33930562 CCCGCTGCCACAACCTTCTATCCGGTAGGGG
128 CCTGCTGCCACAACCCTCGAT-CGGTCCGAT
* ***
33930593 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCACTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCACTCAGT
* * * *
33930658 CGGCCGGAGATGCAGAATGCGCAAGCTAGGGATCGGCTCAGTCCC-CTTGTGTGCTATCGATCTT
66 CGGCCGGAGAGGCAGAATGCGCAAGCTAGGGATCGGCTCAGTCCCTCTTGCGTGCTGTCGATCCT
* * *
33930722 ACTGCCACAACCCTCGGTCTGGTCTGAT
131 GCTGCCACAACCCTCGATC-GGTCCGAT
*
33930750 CTTAGAC-TGGGAATGAACTTCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
33930777 TTAGATTGGG
Statistics
Matches: 266, Mismatches: 67, Indels: 19
0.76 0.19 0.05
Matches are distributed among these distances:
156 3 0.01
157 88 0.33
158 135 0.51
159 39 0.15
160 1 0.00
ACGTcount: A:0.23, C:0.27, G:0.28, T:0.22
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCACTCAGT
CGGCCGGAGAGGCAGAATGCGCAAGCTAGGGATCGGCTCAGTCCCTCTTGCGTGCTGTCGATCCT
GCTGCCACAACCCTCGATCGGTCCGAT
Found at i:33930786 original size:26 final size:26
Alignment explanation
Indices: 33930750--33930802 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
33930740 CTGGTCTGAT
*
33930750 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
33930776 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
33930802 C
1 C
33930803 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:33931753 original size:154 final size:156
Alignment explanation
Indices: 33931488--33931845 Score: 386
Period size: 154 Copynumber: 2.3 Consensus size: 156
33931478 AACTCCGTAT
* * *
33931488 GCTTAAACATGAAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTTAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACG-AACGAGCGTGCGGGCACTTA-
* * * * *
33931553 TCGGCCGGAGAGGCAGAATGTGCAAGTTGGGGATCAGCCGAGTCCCCTCATGCGTGCTGTCGATC
64 -CGGCCGAAGAGGCAGAATGCGCAAGTCGAGGATCAGCCGAGTCCCCTCATACGTGCTGTCGATC
*
33931618 -CTACTGCCGCAACCCTCGGTCCGG-TCCAA
128 TC-ACTGCCACAACCCTCGGTCCGGCT-CAA
* * * *
33931647 TCTTAGAC-TGGGAATGAACTCCATATGCCTAAGTCAACCCACGAATGAGCGTGCGGGCGC-TA-
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAACGAGCGTGCGGGCACTTAC
* * * * *
33931709 GGCCGAATAGGCATAATGCGCAAGTCGAGGATCGGCCCGA-TCCCCTTATACGTGCTGTCGGTCT
65 GGCCGAAGAGGCAGAATGCGCAAGTCGAGGATCAG-CCGAGTCCCCTCATACGTGCTGTCGATCT
* * ***
33931773 CGCTGCCACAACCCTCGGTCTGGCTGGG
129 CACTGCCACAACCCTCGGTCCGGCTCAA
* *
33931801 GCTTAGACATTGAATGAACTCCCTATGCCTAAGCCAACCCACGAA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAA
33931846 ACGGGCGTAT
Statistics
Matches: 167, Mismatches: 27, Indels: 15
0.80 0.13 0.07
Matches are distributed among these distances:
154 106 0.63
155 7 0.04
157 2 0.01
158 16 0.10
159 36 0.22
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAACGAGCGTGCGGGCACTTACG
GCCGAAGAGGCAGAATGCGCAAGTCGAGGATCAGCCGAGTCCCCTCATACGTGCTGTCGATCTCA
CTGCCACAACCCTCGGTCCGGCTCAA
Found at i:33932009 original size:26 final size:26
Alignment explanation
Indices: 33931960--33932010 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
33931950 GGTCCGATCC
* *
33931960 TAGACTGGGAATGAACTTCGTATGCA
1 TAGACTGGGAATGAACTCCATATGCA
*
33931986 TAGACTGGGGATGAACTCCATATGC
1 TAGACTGGGAATGAACTCCATATGC
33932011 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.25
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCATATGCA
Found at i:33933217 original size:26 final size:26
Alignment explanation
Indices: 33933176--33933227 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
33933166 TCGGTTCGAT
*
33933176 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
33933202 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
33933228 GCTAAGTCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:33933795 original size:157 final size:159
Alignment explanation
Indices: 33933518--33933808 Score: 365
Period size: 157 Copynumber: 1.8 Consensus size: 159
33933508 TAACCCTTGA
* * ** *
33933518 TCCGATCTGATCTTAGACAGGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGTGTGT
1 TCCGATCTGATCTTAGACAGGGAATGAACTCCGTATGCATAAGCCAACCCAAGAAACAAACGTGC
* * * * * * *
33933583 AGGTGCTCAACTAGCCAGAGAAGCAGAATGCGCAAGTTGGGGATTGGCTCGAT-CCCC-TTGTGT
66 AGGCGCTCAACCAGCCAAAGAAGCAGAATGCACAAGTCGGAGATCGGCTCGATCCCCCTTTGTGT
33933646 GCTATCGATACTACTATCGCAACCCTCAG
131 GCTATCGATACTACTATCGCAACCCTCAG
* *
33933675 TCCGATCTGATCTTAGACTA-GGAATGAACTCCGTATGCATAAGTCAACCCATGAAACAAACGTG
1 TCCGATCTGATCTTAGAC-AGGGAATGAACTCCGTATGCATAAGCCAACCCAAGAAACAAACGTG
* * * * *
33933739 CAGGCGTTGAGCCAGCCAAAGAGGCATAATGCACAAGTCGGAGATCGGC-CTGATCCCCCTTTGT
65 CAGGCGCTCAACCAGCCAAAGAAGCAGAATGCACAAGTCGGAGATCGGCTC-GATCCCCCTTTGT
33933803 GTGCTA
129 GTGCTA
33933809 CCGGTCCCGC
Statistics
Matches: 111, Mismatches: 19, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
156 1 0.01
157 95 0.86
158 5 0.05
159 10 0.09
ACGTcount: A:0.28, C:0.25, G:0.24, T:0.22
Consensus pattern (159 bp):
TCCGATCTGATCTTAGACAGGGAATGAACTCCGTATGCATAAGCCAACCCAAGAAACAAACGTGC
AGGCGCTCAACCAGCCAAAGAAGCAGAATGCACAAGTCGGAGATCGGCTCGATCCCCCTTTGTGT
GCTATCGATACTACTATCGCAACCCTCAG
Found at i:33933935 original size:159 final size:159
Alignment explanation
Indices: 33933529--33934411 Score: 534
Period size: 159 Copynumber: 5.6 Consensus size: 159
33933519 CCGATCTGAT
* * * * *** *
33933529 CTTAGACAGGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGTGTGTAGGTGCTCAAC
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGTGCTCAGC
* * * ** * * * ** * *
33933594 TAGCCAGAGAAGCAGAATGCGCAAGTTGGGGATTGGCTCGAT--CCCCTTGTGTGCTATCGATAC
66 -GGCCAGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGATCGCCCCCTACGTGCTACCGATCC
** ** * * * *
33933657 TACTATCGCAACCCTCAGTCCGATCT-GAT
130 CGCTGCCACAACCCTCGGTCCGGTCTAGAG
* * * * * * * * * *
33933686 CTTAGAC-TAGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACAAACGTGCAGGCGTTGAG
1 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGTGCTCAG
* * * * * * * * * ** *
33933750 CCAGCCAAAGAGGCATAATGCACAAGTCGGAGATCGGCCTGATC-CCCCTTTGTGTGCTACCGGT
65 -CGGCCAGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGATCGCCCC-CTACGTGCTACCGAT
* * * *
33933814 CCCGCTACCACAACCTTCGGTCTGG-CTAGGG
128 CCCGCTGCCACAACCCTCGGTCCGGTCTAGAG
* *
33933845 CTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTACGGGTGCTCAGT
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGTGCTCAG-
* * * ** * * * **
33933910 CGACCGGAGAGGTAGAATGTGCAAGTTGGGGATTGGCCCGATCGCCCCCTGCGTACTGTCGATCC
65 CGGCCAGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGATCGCCCCCTACGTGCTACCGATCC
* * *** *
33933975 TGTTGCTGTAACCCTCGGTCCGGTCT-GAT
130 CGCTGCCACAACCCTCGGTCCGGTCTAGAG
* * * * * * *
33934004 CTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTATGGGTGCTGAG
1 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGTGCTCAG
** * * * * * *
33934068 CTGGCTTGAGAGGCATAATACGCAAGCCGGGGATTGGCCCGATC-CCCCTCTATGTGCTGCCTG-
65 C-GGCCAGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGATCGCCCC-CTACGTGCTACC-GA
* * *
33934131 TCCCGCTGCCACAACCCTC-GACCGGT-TGGGG
127 TCCCGCTGCCACAACCCTCGGTCCGGTCTAGAG
* * * * ** **
33934162 CTTGGACATGGAATGAACTCCCTATGCCTAAGCCAACCAACT-AAACGGGCATGTGGCCGCTCAG
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA-TGAAACGAGCGTACGGGTGCTCAG
* * * *
33934226 CCGGCCAGAGAGGTAGAATGCGTAAGCCGGGGATCGGCCTGGTCGCCCCCTACGTGCTATCGATC
65 -CGGCCAGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGATCGCCCCCTACGTGCTACCGATC
* * ** *
33934291 CTGCTGTCGTAACCCTCGGTCCGGTCTA-AT
129 CCGCTGCCACAACCCTCGGTCCGGTCTAGAG
* * * *
33934321 CTTAGACTTGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGTGCTCAGC
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGTGCTCAG-
** *
33934386 CGGCCAGAGAGACATAATGCGCAAGC
65 CGGCCAGAGAGGTAGAATGCGCAAGC
33934412 TAGGATCAGC
Statistics
Matches: 551, Mismatches: 154, Indels: 40
0.74 0.21 0.05
Matches are distributed among these distances:
157 85 0.15
158 126 0.23
159 331 0.60
160 9 0.02
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGTGCTCAGC
GGCCAGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGATCGCCCCCTACGTGCTACCGATCCC
GCTGCCACAACCCTCGGTCCGGTCTAGAG
Found at i:33934308 original size:317 final size:314
Alignment explanation
Indices: 33933529--33934675 Score: 1060
Period size: 317 Copynumber: 3.6 Consensus size: 314
33933519 CCGATCTGAT
* * * * *
33933529 CTTAGACAGGGAATGAACTCCGTATGCCTAAGCCAACCCAA-GAAACGAGTGTGTAGGTGCTCA-
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA-CCAATGAAACGGGCGTGT-GGCGCTCAG
* * * * * * * * *
33933592 ACTAGCCAGAGAAGCAGAATGCGCAAGTTGGGGATTGG-CTCGAT--CCCCTTGTGTGCTATCGA
64 TC-GGCCAGAGAGGTAGAATGTGCAAGTTGGGGATCGGCCT-GGTCGCCCCCTGCGTGCTATCGA
* * * * *
33933654 TACTACT-ATCGCAACCCTCAGTCCGATCTGATCTTAGACTAGGAATGAACTCCGTATGCATAAG
127 TCCTACTGCT-GCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * * * *
33933718 TCAACCCATGAAACAAACGTGCAGGCGT--TGAGCCAGCCAAAGAGGCATAATGCACAAGTCGGA
191 TCAACCCATGAAAC-GA-GTGTAGG-GTGCTGAGCCGGCCAGAGAGGCATAATGCGCAAG-CGGG
* * * * * * * * * *
33933781 GATCGGCCTGATCCCCCTTTGTGTGCTACCGGTCCCGCTACCACAACCTTCGGTCTGGCTAGGG
252 GATCGGCCCGATCCCCCTCTATGTGCTGCCGGTCCCGCTGCCACAACCCTC-GACCGGTTGGGG
* * *
33933845 CTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTACG-GGTGCTCAG
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCAATGAAACGGGCGT--GTGGCGCTCAG
* * * * * * *
33933909 TCGACCGGAGAGGTAGAATGTGCAAGTTGGGGATTGGCCCGATCGCCCCCTGCGTACTGTCGATC
64 TCGGCCAGAGAGGTAGAATGTGCAAGTTGGGGATCGGCCTGGTCGCCCCCTGCGTGCTATCGATC
** * * *
33933974 CTGTTGCTGTAACCCTCGGTCCGGTCTGATCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCA
129 CTACTGCTGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * ** * *
33934039 ACCCACGAAACGAGTGTATGGGTGCTGAGCTGGCTTGAGAGGCATAATACGCAAGCCGGGGATTG
194 ACCCATGAAACGAGTGTA-GGGTGCTGAGCCGGCCAGAGAGGCATAATGCGCAAG-CGGGGATCG
*
33934104 GCCCGATCCCCCTCTATGTGCTGCCTGTCCCGCTGCCACAACCCTCGACCGGTTGGGG
257 GCCCGATCCCCCTCTATGTGCTGCCGGTCCCGCTGCCACAACCCTCGACCGGTTGGGG
* *
33934162 CTTGGACATGGAATGAACTCCCTATGCCTAAGCCAACCAACT-AAACGGGCATGTGGCCGCTCAG
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCAA-TGAAACGGGCGTGTGG-CGCTCAG
* * * ** *
33934226 CCGGCCAGAGAGGTAGAATGCGTAAGCCGGGGATCGGCCTGGTCGCCCCCTACGTGCTATCGATC
64 TCGGCCAGAGAGGTAGAATGTGCAAGTTGGGGATCGGCCTGGTCGCCCCCTGCGTGCTATCGATC
* * * *
33934291 CTGCTG-TCGTAACCCTCGGTCCGGTCTAATCTTAGACTTGGG-ATGAACTCCGTATGCCTAAGT
129 CTACTGCT-GCAACCCTCAGTCCGGTCTGATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGT
* * * **
33934354 CAACCCATGAAACGAGCGTACGGGTGCTCAGCCGGCCAGAGAGACATAATGCGCAAGCTAGGATC
192 CAACCCATGAAACGAGTGTA-GGGTGCTGAGCCGGCCAGAGAGGCATAATGCGCAAGCGGGGATC
* * * * ** *
33934419 AGCCCGGTCCCCTTTTGCGTGCTATCGATCCCACTGTCGGTCTTGCTGCCACAACCCTCGATCCA
256 GGCCCGATCCCC-----C-T-CTAT-G-T---GCTGCCGGTCCCGCTGCCACAACCCTCGA-CCG
33934484 GTTGGGG
308 GTTGGGG
* ** * *
33934491 CTAAGACATGGAATGAACTCTGTATGCCTAAGCCAACCTATGAAACAGGCGTGCTGGCGCTCAGT
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCAATGAAACGGGCGTG-TGGCGCTCAGT
* * * * * *
33934556 CGGTCAGAGAGGCAAAATGTGCAAGTTGGGGATCAGCCTGGTC-CCCCTTGCGTGCTGTCGATCC
65 CGGCCAGAGAGGTAGAATGTGCAAGTTGGGGATCGGCCTGGTCGCCCCCTGCGTGCTATCGATCC
* *
33934620 TACTGCTGCAACCCTCAGTCCAGTTTGATCTTAGACTGGGAATGAACTCCGTATGC
130 TACTGCTGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
33934676 TTAGACATGG
Statistics
Matches: 681, Mismatches: 117, Indels: 54
0.80 0.14 0.06
Matches are distributed among these distances:
315 4 0.01
316 106 0.16
317 219 0.32
318 154 0.23
319 1 0.00
321 1 0.00
322 1 0.00
323 4 0.01
324 1 0.00
325 1 0.00
327 4 0.01
328 86 0.13
329 96 0.14
330 3 0.00
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.22
Consensus pattern (314 bp):
CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCAATGAAACGGGCGTGTGGCGCTCAGTC
GGCCAGAGAGGTAGAATGTGCAAGTTGGGGATCGGCCTGGTCGCCCCCTGCGTGCTATCGATCCT
ACTGCTGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
CCATGAAACGAGTGTAGGGTGCTGAGCCGGCCAGAGAGGCATAATGCGCAAGCGGGGATCGGCCC
GATCCCCCTCTATGTGCTGCCGGTCCCGCTGCCACAACCCTCGACCGGTTGGGG
Found at i:33934687 original size:26 final size:26
Alignment explanation
Indices: 33934649--33934701 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
33934639 CCAGTTTGAT
* *
33934649 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCGCATG
33934675 CTTAGACAT-GGAATCAACTCCGCATG
1 CTTAGAC-TGGGAATCAACTCCGCATG
33934701 C
1 C
33934702 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.25, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCGCATG
Found at i:33934806 original size:184 final size:184
Alignment explanation
Indices: 33934494--33934849 Score: 421
Period size: 184 Copynumber: 1.9 Consensus size: 184
33934484 GTTGGGGCTA
* * * * * * * * *
33934494 AGACATGGAATGAACTCTGTATGCCTAAGCCAACCTATGAAACAGGCGTGCTGGCGCTCAGTCGG
1 AGACATGGAATCAACTCCGCATGCCTAAGCCAACCCACGAAACAGACGTGCGGGCGCTCAGCCGA
* * ** * * *
33934559 TCAGAGAGGCAAAATGTGCAAGTTGGGGATCAGCCTGGTCCCCCTTGCGTGCTGTCGATCCTACT
66 CCAGAGAGGCAAAATGCGCAAGCCGGGGATCAGCCTGATCCCCCTTGCATGCTGTCAATCCTACT
** * **
33934624 GCTGCAACCCTCAGTCCAGTTTGATCTTAGACTGGGAATGAACTCCGTATGCTT
131 GCCACAACCCTCAGTCCAGTTCGATCTTAGACTAAGAATGAACTCCGTATGCTT
*
33934678 AGACATGGAATCAACTCCGCATGCCTAAGCCAACCCACGAAAC-GAACGTGCGGGTGCTCAGCCG
1 AGACATGGAATCAACTCCGCATGCCTAAGCCAACCCACGAAACAG-ACGTGCGGGCGCTCAGCCG
* * *
33934742 ACC-GAAGAGGCAGAATGCGTAAGCCGGGGATCGGCCTGATCCCCCCTT-CATGCTGTCAATCCT
65 ACCAG-AGAGGCAAAATGCGCAAGCCGGGGATCAGCCTGAT-CCCCCTTGCATGCTGTCAATCCT
* *
33934805 ACTGCCACAACCCTCGGTCCGGTTCGATCTTAGACTAAGAATGAA
128 ACTGCCACAACCCTCAGTCCAGTTCGATCTTAGACTAAGAATGAA
33934850 TTTTGTATGC
Statistics
Matches: 142, Mismatches: 27, Indels: 6
0.81 0.15 0.03
Matches are distributed among these distances:
183 2 0.01
184 133 0.94
185 7 0.05
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.21
Consensus pattern (184 bp):
AGACATGGAATCAACTCCGCATGCCTAAGCCAACCCACGAAACAGACGTGCGGGCGCTCAGCCGA
CCAGAGAGGCAAAATGCGCAAGCCGGGGATCAGCCTGATCCCCCTTGCATGCTGTCAATCCTACT
GCCACAACCCTCAGTCCAGTTCGATCTTAGACTAAGAATGAACTCCGTATGCTT
Found at i:33936020 original size:184 final size:184
Alignment explanation
Indices: 33935674--33936043 Score: 417
Period size: 184 Copynumber: 2.0 Consensus size: 184
33935664 TCCAGCTAGG
* * *
33935674 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCATACGGGGGCTAAG
1 GCTTAAACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACCAGCATACGGGGGCTAAG
* * * * ** *
33935739 CCGATCGGAGAGGCAGAATGGGCTAGCCAGGGATTGGCTCGATCCCCCCTATGTGCTATCGATCC
66 CCGATCGGAGAGGCAGAATGCGCTAGCCAGGGATCGACCCGATCCCCCCTACATGCTACCGATCC
* * * * *
33935804 TGCTATCGTAACCCTCGATTCGGTCCGATCTTAGATTAGGAATGAACTCCATAT
131 TGCTACCGCAACCCTAGATTCGATCCGATCTTAGACTAGGAATGAACTCCATAT
* * *
33935858 GCTTAAACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACCAGCGTACGGGTGCTCAA
1 GCTTAAACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACCAGCATACGGGGGCT-AA
* *
33935923 -CC-AGTCGGAGAGGTAGAA-GACG-TAAGCC-GAGGATCGACCCGATCCCCCCTGCATGCTACC
65 GCCGA-TCGGAGAGGCAGAATG-CGCT-AGCCAG-GGATCGACCCGATCCCCCCTACATGCTACC
* * * * * * *
33935983 GATCTTGCTGCCGCAACCCTAGGTTCGATCTGATCTTAGACTGGGAATGATCTCCGTAT
126 GATCCTGCTACCGCAACCCTAGATTCGATCCGATCTTAGACTAGGAATGAACTCCATAT
33936042 GC
1 GC
33936044 CAAAGTCAAC
Statistics
Matches: 154, Mismatches: 27, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
183 4 0.03
184 148 0.96
185 2 0.01
ACGTcount: A:0.26, C:0.28, G:0.25, T:0.21
Consensus pattern (184 bp):
GCTTAAACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACCAGCATACGGGGGCTAAG
CCGATCGGAGAGGCAGAATGCGCTAGCCAGGGATCGACCCGATCCCCCCTACATGCTACCGATCC
TGCTACCGCAACCCTAGATTCGATCCGATCTTAGACTAGGAATGAACTCCATAT
Found at i:33936709 original size:500 final size:498
Alignment explanation
Indices: 33935647--33936917 Score: 1472
Period size: 500 Copynumber: 2.5 Consensus size: 498
33935637 TGTTGGTCTT
* *
33935647 GCTGCCACAACCCTTGGTCCAGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
1 GCTGCCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
* * * * * * * * *
33935712 CCATGAAACGAGCATACGGGGGCTAAGCCGATCGGAGAGGCAGAATGGGCTAGCCAGGGATTGGC
66 CCATGAAAGGA-CGTGCAGGCGCTCAGCCGATCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGC
* * * * * * *
33935777 TCGATCCCCCCTATGTGCTATCGATCCTGCTATCGTAACCCTCGATTCGGTCCGATCTTAGATTA
130 CCGAT-CCCCCTACGTGCTATCGATCCTACTACCGTAAGCCTCGATCCGGTCCGATCTTAGACTA
* * *
33935842 GGAATGAACTCCATATGCTTAAACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACC
194 GGAATGAACTCCATATGCTTAGAC-TGGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACA
* * * *
33935906 AGCGTACGGGTGCTCAACCAGTCGGAGAGGTAGAAGACGTAAGCCGAGGATCGACCCGATCCCCC
258 AGCGTACGGGCGCTCAACCAGCCGAAGAGGCAGAAGACG-AAGCCGAGGATCGACCCGATCCCCC
* * * *
33935971 CTGCATGCTACCGATCTTGCTGCCGCAACCCTAGGTTCGATCTGATCTTAGACTGGGAATGATCT
322 CTACATGCTACCGATCCTGCTGCCGCAACCCTAGGTTCGATCCGATCTTAGACTGGGAATGAACT
* * * * **
33936036 CCGTATGCCAAAGTCAACCCACGAAACGAGCGTATGGGCATTGAGCTGGTCGGAGAGGCATAATG
387 CCGTATGCCAAAGTCAACCCACAAAAAGAGCGTACGGGCACTGAGCCAGTCGGAGAGGCATAATG
* * *
33936101 TGCAAGCCGTGGATCGGCCCGATCCCTCTCTGCGTGCTACCGGTCTC
452 CGCAAGCCGAGGATCGGCCCGATCCCTCTCTGCGTGCTACCGGTCCC
* * * * * * * *
33936148 GCTACCACAGCCCTCAGTTCAGTTGAGGCTTAGACATGGAATGAACTCCCTCTGGCTAAGCCAAC
1 GCTGCCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
* * * * * * * * *
33936213 CCACGAAATGGACGTGCAGACGCTCAGTCGGTTGAAGAGGCAAAATGCGAAAGCCGGGGATCGGC
66 CCATGAAA-GGACGTGCAGGCGCTCAGCCGATCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGC
* * *
33936278 CCGATCCCTCCTACGTGCTATCGATCCTACTACCGTAAGTCTCGATCCAGTTCGATCTTAGACTA
130 CCGATCCC-CCTACGTGCTATCGATCCTACTACCGTAAGCCTCGATCCGGTCCGATCTTAGACTA
*
33936343 GGAATGAACTCCATATGCTTAGACTGGGAATGTACTCTGTATGCCTAAGCCAACCCACGAAACAA
194 GGAATGAACTCCATATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACAA
* * * * *
33936408 GCGTGCGGGCGCTCAGCTAGCCGAAGAGGCAGAATGCAC-AAGCCGAGGATCGGCTCGA-CCCCC
259 GCGTACGGGCGCTCAACCAGCCGAAGAGGCAGAA-G-ACGAAGCCGAGGATCGACCCGATCCCCC
* ** * *
33936471 CTACGTGCTGTCGATCCTGCTGCCGCAACCCTCGG-TCTGATCCGATCTTAGATTGGGAATGAAC
322 CTACATGCTACCGATCCTGCTGCCGCAACCCTAGGTTC-GATCCGATCTTAGACTGGGAATGAAC
* * * *
33936535 TCCGTATGCCTAAGTTAACCCGCAAAAAGAGCGTGCGGGCACTGAGCCAGTCGGAGAGGCATAAT
386 TCCGTATGCCAAAGTCAACCCACAAAAAGAGCGTACGGGCACTGAGCCAGTCGGAGAGGCATAAT
* * * ** *
33936600 GCGCAAGCCGAGGATTGGCTCGGTCCC-CTTCTGCGTTTTATCGGTCCC
451 GCGCAAGCCGAGGATCGGCCCGATCCCTC-TCTGCGTGCTACCGGTCCC
* *
33936648 GTTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
1 GCTGCCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
* * *
33936713 CCATGAAACGAACGTGCAGGCGCTCAGCCGATCGGAGAGGCAGAATGCTCAAGCTAGGGATCGGC
66 CCATGAAA-GGACGTGCAGGCGCTCAGCCGATCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGC
* * * * * * * * * * *
33936778 CTGGTCCCCCATGCGTGCTGTCGATCCTACTGCCATAAGCCTTGATCTGGTCCGATCATAGGCTG
130 CCGATCCCCC-TACGTGCTATCGATCCTACTACCGTAAGCCTCGATCCGGTCCGATCTTAGACTA
* ** * ** * *
33936843 GGAATGAAATCTGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAATCAACCCACAAAACGA
194 GGAATGAACTCCATATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACAA
33936908 GCGTACGGGC
259 GCGTACGGGC
33936918 ACCCAGCTGG
Statistics
Matches: 636, Mismatches: 126, Indels: 17
0.82 0.16 0.02
Matches are distributed among these distances:
499 5 0.01
500 373 0.59
501 253 0.40
502 3 0.00
503 2 0.00
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (498 bp):
GCTGCCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
CCATGAAAGGACGTGCAGGCGCTCAGCCGATCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCC
CGATCCCCCTACGTGCTATCGATCCTACTACCGTAAGCCTCGATCCGGTCCGATCTTAGACTAGG
AATGAACTCCATATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACAAGC
GTACGGGCGCTCAACCAGCCGAAGAGGCAGAAGACGAAGCCGAGGATCGACCCGATCCCCCCTAC
ATGCTACCGATCCTGCTGCCGCAACCCTAGGTTCGATCCGATCTTAGACTGGGAATGAACTCCGT
ATGCCAAAGTCAACCCACAAAAAGAGCGTACGGGCACTGAGCCAGTCGGAGAGGCATAATGCGCA
AGCCGAGGATCGGCCCGATCCCTCTCTGCGTGCTACCGGTCCC
Found at i:33936729 original size:159 final size:157
Alignment explanation
Indices: 33936359--33936766 Score: 410
Period size: 159 Copynumber: 2.6 Consensus size: 157
33936349 AACTCCATAT
* *
33936359 GCTTAGACTGGGAATGTACTCTGTATGCCTAAGCCAACCCACGAAAC-AAGCGTGCGGGCGCTCA
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAA-CGTGCGGGCGCTCA
* * * *
33936423 GCTAGCCGAAGAGGCAGAATGCACAAGCCGAGGATCGGCTCGACCCCCCTACGTGCTGTCGATCC
65 GCCAGTCGGAGAGGCAGAATGCACAAGCCGAGGATCGGCTCGACCCCCCTACGTGCTATCGATCC
* * *
33936488 TGCTGCCGCAACCCTCGGTCTGATCCGA
130 CGCTGCCACAACCCTCGGTCGGATCCGA
* * ** * * * * * *
33936516 TCTTAGATTGGGAATGAACTCCGTATGCCTAAGTTAACCCGCAAAAAGAGCGTGCGGGCACTGAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCGCTCAG
* * * * * * ** *
33936581 CCAGTCGGAGAGGCATAATGCGCAAGCCGAGGATTGGCTCGGTCCCCTTCTGCGTTTTATCGGTC
66 CCAGTCGGAGAGGCAGAATGCACAAGCCGAGGATCGGCTC-GACCCC-CCTACGTGCTATCGATC
* * * *
33936646 CCGTTGCCACAACCCTCGGTCCGGCT-GGG
129 CCGCTGCCACAACCCTCGGT-CGGATCCGA
* * *
33936675 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAACGTGCAGGCGCTCA
1 GCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCGCTCA
*
33936739 GCC-GATCGGAGAGGCAGAATGCTCAAGC
65 GCCAG-TCGGAGAGGCAGAATGCACAAGC
33936767 TAGGGATCGG
Statistics
Matches: 198, Mismatches: 47, Indels: 10
0.78 0.18 0.04
Matches are distributed among these distances:
157 85 0.43
158 7 0.04
159 102 0.52
160 4 0.02
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.19
Consensus pattern (157 bp):
GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCGCTCAG
CCAGTCGGAGAGGCAGAATGCACAAGCCGAGGATCGGCTCGACCCCCCTACGTGCTATCGATCCC
GCTGCCACAACCCTCGGTCGGATCCGA
Found at i:33937238 original size:26 final size:26
Alignment explanation
Indices: 33937200--33937252 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
33937190 CCAATCCGAT
* * *
33937200 CTTAGGCTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
33937226 CTTAGACTAGGAATGTACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
33937252 C
1 C
33937253 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:33938455 original size:26 final size:26
Alignment explanation
Indices: 33938426--33938478 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
33938416 CCGATCCGAT
*
33938426 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACACCGTATG
*
33938452 CTTAGACATGGAATGAACACGGTATG
1 CTTAGACATGGAATGAACACCGTATG
33938478 C
1 C
33938479 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACATGGAATGAACACCGTATG
Found at i:33938571 original size:321 final size:320
Alignment explanation
Indices: 33937970--33938610 Score: 757
Period size: 321 Copynumber: 2.0 Consensus size: 320
33937960 TGAACTCGGT
* * * **
33937970 ATGCCTAAGCCAATCCACGAAACGAGCGTGCGGGTGCTCAACTGACCGGAGAGGCAGAATGCTCA
1 ATGCCTAAGCCAACCCACAAAACGAGCGTGCGAGCACTCAACTGACCGGAGAGGCAGAATGCTCA
** * *
33938035 AGCCGGAGATCGGCCTGGTCCCCCCTGCGTGCTGCTGATCCTGCTGCCACAACCCTCAGTCCGGT
66 AGCCGGAGATCGGCCCAGTCCCCCCTGCGTGCTGCTGATCCTACTGCCACAACCCTCAGTCCGAT
** * * * ** * *
33938100 TTGATCTTAGACTAGGAATGAACTCTGTATGCTTAGATTGGGGATGAATTCTGTATGCCTAAGTC
131 CCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGAATGGGAATGAACACGGTATGCCTAAGCC
* ** * * *
33938165 AACCCATGAAATGAGCATACGGGCGTTCAACCGGGCGGAGAGGCATAGTGCGTAAGTCAAGGATC
196 AACCCACGAAATGAGCATACGGGCACTCAACCGGGCGGAGAGGCAGAATGCGTAAGCCAAGGATC
** * *
33938230 AGCCTGATCCCCTTCTGCATGCTACTGATCCCGCTGTCGATCCTGCTGCCACAACCCTCG
261 AGCCTGATCCCCCCCTGCATGCTACCGATCCCGCTGTCGATCCTACTGCCACAACCCTCG
* ** * *
33938290 ATGCCTAAGCCAACCCACAAAACGGGCGTGCGAGCACTCAGTTGGCTGGAGAGGCAGAATG-TGC
1 ATGCCTAAGCCAACCCACAAAACGAGCGTGCGAGCACTCAACTGACCGGAGAGGCAGAATGCT-C
* * * *
33938354 AAGCTGGGGATCGGCCCAGTCCCCCCCTGCGTGCTG-TCGATCCTACTGTCGCAACCCTCAGTCC
65 AAGCCGGAGATCGGCCCAGT-CCCCCCTGCGTGCTGCT-GATCCTACTGCCACAACCCTCAGTCC
*
33938418 GATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAT-GGAATGAACACGGTATGCCTA
128 GATCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGA-ATGGGAATGAACACGGTATGCCTA
* * ** * *
33938482 AGCCAACCCACGAAATGAGCATGCGTGCACTCAACCGGTTGGAGAGGTAGAATGCGTAAGCCGAG
192 AGCCAACCCACGAAATGAGCATACGGGCACTCAACCGGGCGGAGAGGCAGAATGCGTAAGCCAAG
* * * * * * * *
33938547 GATCGGCCTGGTCCCCCCCTGCATGCTGCCGATCCTGCTGTTGGTCCTACTGTCGCAACCCTCG
257 GATCAGCCTGATCCCCCCCTGCATGCTACCGATCCCGCTGTCGATCCTACTGCCACAACCCTCG
33938611 GTCCAGTCTG
Statistics
Matches: 265, Mismatches: 52, Indels: 7
0.82 0.16 0.02
Matches are distributed among these distances:
319 1 0.00
320 69 0.26
321 194 0.73
322 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.21
Consensus pattern (320 bp):
ATGCCTAAGCCAACCCACAAAACGAGCGTGCGAGCACTCAACTGACCGGAGAGGCAGAATGCTCA
AGCCGGAGATCGGCCCAGTCCCCCCTGCGTGCTGCTGATCCTACTGCCACAACCCTCAGTCCGAT
CCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGAATGGGAATGAACACGGTATGCCTAAGCC
AACCCACGAAATGAGCATACGGGCACTCAACCGGGCGGAGAGGCAGAATGCGTAAGCCAAGGATC
AGCCTGATCCCCCCCTGCATGCTACCGATCCCGCTGTCGATCCTACTGCCACAACCCTCG
Found at i:33938661 original size:26 final size:26
Alignment explanation
Indices: 33938623--33938675 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
33938613 CCAGTCTGAT
33938623 CTTAGACTGGGAATAAACT-TCGTATG
1 CTTAGACTGGGAATAAACTCT-GTATG
*
33938649 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATAAACTCTGTATG
33938675 C
1 C
33938676 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCTGTATG
Found at i:33944846 original size:26 final size:26
Alignment explanation
Indices: 33944810--33944862 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
33944800 TCAATCCGAT
*
33944810 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
33944836 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
33944862 C
1 C
33944863 CTAAGTCAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:33945858 original size:159 final size:159
Alignment explanation
Indices: 33945567--33945858 Score: 397
Period size: 159 Copynumber: 1.8 Consensus size: 159
33945557 CTTATACATG
* * * *
33945567 GAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATGCGGACGCTCAGCCGGTCGGAGA
1 GAATGAACTCCGTATGCATAAGCCAACCCACGAAATGAGCATGCGGACACTCAGACGGTCGAAGA
* ***
33945632 GGCAGAACGCACAAGCCAGGGATCGACCCGATCCCCCCCTGCGTGCTGTCGATCCTACTGTTGCA
66 GGCAGAACGCACAAGCCAGGGATCGACCCGATCCCCCCCTGCGTGCTGTCGATCCCACTGCCACA
33945697 ACCCTTGATTCGGTCCAATCTTACACTGT
131 ACCCTTGATTCGGTCCAATCTTACACTGT
* * *
33945726 GAATGAAGTCCGTATGCATAAGTCAACCCACGAAATGAGCATGCAGG-CACTGAGACGGTCGAAG
1 GAATGAACTCCGTATGCATAAGCCAACCCACGAAATGAGCATGC-GGACACTCAGACGGTCGAAG
* * * * * * * *
33945790 AGGGATAATGCACAAGCCGGGGATCGGCCCGATCCCCCTCTGCGTGCTGTCGGTCCCGCTGCCAC
65 AGGCAGAACGCACAAGCCAGGGATCGACCCGATCCCCCCCTGCGTGCTGTCGATCCCACTGCCAC
33945855 AACC
130 AACC
33945859 ATCGGTCTGG
Statistics
Matches: 113, Mismatches: 19, Indels: 2
0.84 0.14 0.01
Matches are distributed among these distances:
159 111 0.98
160 2 0.02
ACGTcount: A:0.25, C:0.32, G:0.26, T:0.17
Consensus pattern (159 bp):
GAATGAACTCCGTATGCATAAGCCAACCCACGAAATGAGCATGCGGACACTCAGACGGTCGAAGA
GGCAGAACGCACAAGCCAGGGATCGACCCGATCCCCCCCTGCGTGCTGTCGATCCCACTGCCACA
ACCCTTGATTCGGTCCAATCTTACACTGT
Found at i:33945901 original size:159 final size:159
Alignment explanation
Indices: 33945556--33945956 Score: 387
Period size: 159 Copynumber: 2.5 Consensus size: 159
33945546 AACTCCGTAT
* *
33945556 GCTTATACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATGCGGACGCTCAG
1 GCTTACACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATGCGGACACTCAG
* *
33945621 CCGGTCGGAGAGGCAGAACGCACAAGCCAGGGATCGACCCGATCCCCCCCTGCGTGCTGTCGATC
66 ACGGTCGAAGAGGCAGAACGCACAAGCCAGGGATCGACCCGATCCCCCCCTGCGTGCTGTCGATC
* *** * *
33945686 CTACTGTTGCAACCCTTGATTCGGTCCAA
131 CCACTGCCACAACCATCGATTCGGTCCAA
* * * * *
33945715 TCTTACAC-TGTGAATGAAGTCCGTATGCATAAGTCAACCCACGAAATGAGCATGCAGG-CACTG
1 GCTTACACATG-GAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATGC-GGACACTC
* * * * * * *
33945778 AGACGGTCGAAGAGGGATAATGCACAAGCCGGGGATCGGCCCGATCCCCCTCTGCGTGCTGTCGG
64 AGACGGTCGAAGAGGCAGAACGCACAAGCCAGGGATCGACCCGATCCCCCCCTGCGTGCTGTCGA
* * ***
33945843 TCCCGCTGCCACAACCATCG-GTCTGG-CTGGG
129 TCCCACTGCCACAACCATCGATTC-GGTC-CAA
* * * * * * * *
33945874 GCTTAGACATGGAATTAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCACTCAG
1 GCTTACACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATGCGGACACTCAG
** * *
33945939 TTGGCCTAAGAGGCAGAA
66 ACGGTCGAAGAGGCAGAA
33945957 TGCGCAAATT
Statistics
Matches: 191, Mismatches: 45, Indels: 12
0.77 0.18 0.05
Matches are distributed among these distances:
158 7 0.04
159 180 0.94
160 4 0.02
ACGTcount: A:0.25, C:0.30, G:0.27, T:0.18
Consensus pattern (159 bp):
GCTTACACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATGCGGACACTCAG
ACGGTCGAAGAGGCAGAACGCACAAGCCAGGGATCGACCCGATCCCCCCCTGCGTGCTGTCGATC
CCACTGCCACAACCATCGATTCGGTCCAA
Found at i:33946482 original size:159 final size:152
Alignment explanation
Indices: 33946298--33946746 Score: 357
Period size: 146 Copynumber: 2.9 Consensus size: 152
33946288 CTGAGCCGAT
**
33946298 CGAAGAGGCATAATGCGTAAGCCAGGGATCGATCCGGTCCCCCTCTTCGTGCTGCCGGTCCCACT
1 CGAAGAGGCATAATGCACAAGCCAGGGATCGA-CCGGTCCCCCTCTTCGTGCTG-CGGTCCCACT
*
33946363 GCCATAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCTTAAGGCAACCCA
64 -CCA-AACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGGCAACCCA
33946428 CGAAACGAGTGTGCGAGTGCTCAGTCAAC-
127 CGAAACGAGTGTGC-AG-GCT--GTCAACG
* * * *
33946457 CGAAGAGGCAGAATGCACAAGCCAGGGATCGGCCCAGT-CCCCTCTACGTGCT---G--CCA---
1 CGAAGAGGCATAATGCACAAGCCAGGGATC-GACCGGTCCCCCTCTTCGTGCTGCGGTCCCACTC
** * * * *
33946513 C-AACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCGTATTCCTAAGCCAACCCATGA
65 CAAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGGCAACCCACGA
* * * *
33946577 AACGAGCGTACAGGCTGTGAGCTGG
130 AACGAGTGTGCAGGCTGTCAAC--G
* * * * * * * **
33946602 CTGGAGAGGCATAATGCACAAGCCGGGGATTGACCTGATCCCCTTCTAT-ATGCTGTCGATCCTG
1 C-GAAGAGGCATAATGCACAAGCCAGGGATCGACC-GGTCCCCCTCT-TCGTGCTG-CGGTCCCA
* * * *
33946666 CTACCACAACCCTCAGTTTGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCGTAA-GCTAAC
62 CT-CCA-AACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGGC-AAC
* *
33946730 CCACGAAATGGGTGTGC
124 CCACGAAACGAGTGTGC
33946747 TGGCGCTCAG
Statistics
Matches: 225, Mismatches: 44, Indels: 42
0.72 0.14 0.14
Matches are distributed among these distances:
142 4 0.02
144 3 0.01
145 6 0.03
146 91 0.40
147 10 0.04
148 1 0.00
152 3 0.01
153 1 0.00
154 1 0.00
157 1 0.00
158 14 0.06
159 89 0.40
160 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (152 bp):
CGAAGAGGCATAATGCACAAGCCAGGGATCGACCGGTCCCCCTCTTCGTGCTGCGGTCCCACTCC
AAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGGCAACCCACGAA
ACGAGTGTGCAGGCTGTCAACG
Found at i:33946792 original size:305 final size:305
Alignment explanation
Indices: 33946203--33946814 Score: 714
Period size: 305 Copynumber: 2.0 Consensus size: 305
33946193 CCGATCTTGT
33946203 TGCCACAACCATCGATCAGGCTAGGGCTTAGACACGGAATGAACTCCGTATGCCTAAGCCAACCC
1 TGCCACAACCATCGATCAGGCTAGGGCTTAGACACGGAATGAACTCCGTATGCCTAAGCCAACCC
* ** **
33946268 ATGAAATGAACGTATGGGCACTGAGCCGATCGAAGAGGCATAATGCGTAAGCCAGGGATCGATCC
66 ATGAAACGAACGTACAGGCACTGAGCCGATCGAAGAGGCATAATGCACAAGCCAGGGATCGATCC
* * * * * * *
33946333 GGTCCCCCTCTTCGTGCTGCCGGTCCCACTGCCATAACCCTCGGTCTGGCTGGGGCTTAGACATG
131 GATCCCCCTCTTCATGCTGCCGATCCCACTACCACAACCCTCAGTCTGGCTAGGGCTTAGACATG
* * *
33946398 GAATGAACTCCCTATGCTTAAGGCAACCCACGAAACGAGTGTGCGAGTGCTCAGTCAACCGAAGA
196 GAATGAACTCCCTATGCGTAAGGCAACCCACGAAACGAGTGTGCGAGCGCTCAGCCAACCGAAGA
* *
33946463 GGCAGAATGCACAAGCCAGGGATCGGCCCAGTCCCCTCTACGTGC
261 GGCAGAATACACAAGCCAGGGATCGGCCCAGTCCCCCCTACGTGC
* * * * *
33946508 TGCCACAACCCTCGGTCCA-GCTGGGGCTTAGACATGGAATGAACTCCGTATTCCTAAGCCAACC
1 TGCCACAACCATCGAT-CAGGCTAGGGCTTAGACACGGAATGAACTCCGTATGCCTAAGCCAACC
* ** * * * * *
33946572 CATGAAACGAGCGTACAGGCTGTGAGCTG-GCTGGAGAGGCATAATGCACAAGCCGGGGATTGA-
65 CATGAAACGAACGTACAGGCACTGAGCCGATC-GAAGAGGCATAATGCACAAGCCAGGGATCGAT
* * ** *
33946635 CCTGATCCCCTTCTAT-ATGCTGTCGATCCTGCTACCACAACCCTCAGTTTGGCTAGGGCTTAGA
129 CC-GATCCCCCTCT-TCATGCTGCCGATCCCACTACCACAACCCTCAGTCTGGCTAGGGCTTAGA
* * **
33946699 CATGGAATGAACTCCCTATGCGTAA-GCTAACCCACGAAATGGGTGTGCTG-GCGCTCAGCCGGC
192 CATGGAATGAACTCCCTATGCGTAAGGC-AACCCACGAAACGAGTGTGC-GAGCGCTCAGCCAAC
* * * ** **
33946762 TGGAGAGGTAGAATACGTAAGCTGGGGATCGGCCCAGTCCCCCCTACGTGC
255 CGAAGAGGCAGAATACACAAGCCAGGGATCGGCCCAGTCCCCCCTACGTGC
33946813 TG
1 TG
33946815 TCGATCCTAT
Statistics
Matches: 255, Mismatches: 46, Indels: 12
0.81 0.15 0.04
Matches are distributed among these distances:
304 5 0.02
305 246 0.96
306 4 0.02
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.19
Consensus pattern (305 bp):
TGCCACAACCATCGATCAGGCTAGGGCTTAGACACGGAATGAACTCCGTATGCCTAAGCCAACCC
ATGAAACGAACGTACAGGCACTGAGCCGATCGAAGAGGCATAATGCACAAGCCAGGGATCGATCC
GATCCCCCTCTTCATGCTGCCGATCCCACTACCACAACCCTCAGTCTGGCTAGGGCTTAGACATG
GAATGAACTCCCTATGCGTAAGGCAACCCACGAAACGAGTGTGCGAGCGCTCAGCCAACCGAAGA
GGCAGAATACACAAGCCAGGGATCGGCCCAGTCCCCCCTACGTGC
Found at i:33948080 original size:26 final size:26
Alignment explanation
Indices: 33948044--33948096 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
33948034 TCAATCCGAT
33948044 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
* *
33948070 CTTAGATTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
33948096 C
1 C
33948097 CGAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:33948637 original size:26 final size:26
Alignment explanation
Indices: 33948608--33948660 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
33948598 CCGGTCTAAT
33948608 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
33948634 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
33948660 C
1 C
33948661 CTAAGCCAGC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:33948923 original size:159 final size:157
Alignment explanation
Indices: 33948634--33949125 Score: 487
Period size: 159 Copynumber: 3.1 Consensus size: 157
33948624 ACTCCGTATG
* * * * * * * *
33948634 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAGCCTACGAAATGAGCATGCGAGCACTCAG
1 CTTAGA-ATGGGAATGAACTCTGTATGCCTAAGGCAACCCATGAAACGAGCATGCGGGCACTCAA
* * * * * *
33948698 CCAGCTGGAGAGGCAGAATGAC-CAAGCCGGGGATCGACCCCAT-CTCCTGCTGCGTGCTATCGA
65 CCGGTTGGAGAGGCAAAATG-CGTAAGTCGGGGATCGA-CCCATCCCCCT-CT-CGTGCTATCGA
33948761 TCCTACTACCGCAACCCTCGGTCCGATCTGAT
126 TCCTACTACCGCAACCCTCGGTCCGATCTGAT
* * *
33948793 CTTAGATTGGGAATGAACTCTGTATGCCTAAGGCAACCCATGAAACGAGCGTGCGGGCACTGAAC
1 CTTAGAATGGGAATGAACTCTGTATGCCTAAGGCAACCCATGAAACGAGCATGCGGGCACTCAAC
* * *
33948858 CGGTTGGAGAGGCATAATGCGTAAGTCGGGGATCGACCTGATCCCCCTCTACGTGCTGTCGATCC
66 CGGTTGGAGAGGCAAAATGCGTAAGTCGGGGATCGACC-CATCCCCCTCT-CGTGCTATCGATCC
* * **
33948923 TACTACCACAACCCTCGATCCGA-CTAGGG
129 TACTACCGCAACCCTCGGTCCGATCT-GAT
* * * *
33948952 CTTAGACAT-GGAATGAACT-TCGTATCCCTAAGGCAAGCCATGAAACGGGCATGCGGGCGCTCA
1 CTTAGA-ATGGGAATGAACTCT-GTATGCCTAAGGCAACCCATGAAACGAGCATGCGGGCACTCA
* * * *
33949015 ACCGGTTGGAAAGGCAAAATGCGTAAGTTGGGGATCGGCCCAGTCCCCCTGT-GTGCTATCGATC
64 ACCGGTTGGAGAGGCAAAATGCGTAAGTCGGGGATCGACCCA-TCCCCCTCTCGTGCTATCGATC
* * * *
33949079 TTGCTACCGCAACCCTTGGTCC-AGTCCGAT
128 CTACTACCGCAACCCTCGGTCCGA-TCTGAT
*
33949109 CTTAGACTGGGAATGAA
1 CTTAGAATGGGAATGAA
33949126 ATCCATATGT
Statistics
Matches: 275, Mismatches: 47, Indels: 24
0.79 0.14 0.07
Matches are distributed among these distances:
156 2 0.01
157 43 0.16
158 9 0.03
159 216 0.79
160 5 0.02
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.21
Consensus pattern (157 bp):
CTTAGAATGGGAATGAACTCTGTATGCCTAAGGCAACCCATGAAACGAGCATGCGGGCACTCAAC
CGGTTGGAGAGGCAAAATGCGTAAGTCGGGGATCGACCCATCCCCCTCTCGTGCTATCGATCCTA
CTACCGCAACCCTCGGTCCGATCTGAT
Found at i:33949493 original size:26 final size:26
Alignment explanation
Indices: 33949464--33949516 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
33949454 CCGATCCGAT
* *
33949464 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
33949490 CTTAGACTGGGGATGAAGTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
33949516 C
1 C
33949517 CTAAGTTAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:33949541 original size:355 final size:354
Alignment explanation
Indices: 33948911--33949589 Score: 810
Period size: 355 Copynumber: 1.9 Consensus size: 354
33948901 CCCCTCTACG
33948911 TGCTGTCGATCCTACTACCACAACCCTCGATCCGACTAGGGCTTAGACATGGAATGAACTTCGTA
1 TGCTGTCGATCCTACTACCACAACCCTCGATCCGACTAGGGCTTAGACATGGAATGAACTTCGTA
* * * * * ** *
33948976 TCCCTAAGGCAAGCCATGAAACGGGCATGCGGGCGCTCAACCGGTTGGAAAGGCAAAATGCGTAA
66 TCCCTAAGCCAACCCATGAAACGAGCATGCGGGCACTCAACCAGAAGGAAAGGCAAAATGCGCAA
** * * * * * * *
33949041 GTTGGGGATCGGCCCAGTCCCCCTGTGTGCTATCGATCTTGCTACCGCAACCCTTGGTCCAGTCC
131 GCCGAGGATCGGCCCAGTCCCCCTGCGTGCCACCGATCCTACCACCGCAACCCTTGGTCCAGTCC
* * *
33949106 GATCTTAGACTGGGAATGAAATCCATATGTTTAGACTAGGGATGAACTTCGTATGCCTAAGTCAA
196 GATCTTAGACTGGGAATGAAATCCATATGCTTAGACTAGGGATGAACTCCATATGCCTAAGTCAA
* * * *
33949171 CCCACGAAATGAGCGTACGGGCACTCAG-CTGATCGGAGAGGCATAATGAGCAAGCCAAGGATCA
261 CCCACGAAATGAGCGTACAGGCACTCAGTC-GAGCAGAGAGGCAGAATGAGCAAGCCAAGGATCA
33949235 ACCCGATCCCCCTCTGCGTGCTGTCGATCC
325 ACCCGATCCCCCTCTGCGTGCTGTCGATCC
* * * *
33949265 TGCTGTCGGTCCTGCTACCATAACCCTC-AGTCCGACTGGGGCTTAGACATGGAATGAAC-TCTG
1 TGCTGTCGATCCTACTACCACAACCCTCGA-TCCGACTAGGGCTTAGACATGGAATGAACTTC-G
* ** ** * *
33949328 TATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCACTCAGTCAGAAGGAGAA-GTAGAATGCG
64 TATCCCTAAGCCAACCCATGAAACGAGCATGCGGGCACTCAACCAGAAGGA-AAGGCAAAATGCG
* * * * *
33949392 CAAGCCGAGGATCGGCTCGGTCCCCCCTGCGTGCCACCGATCCTACCGCCGTACCCCTTGGTCC-
128 CAAGCCGAGGATCGGCCCAGT-CCCCCTGCGTGCCACCGATCCTACCACCGCAACCCTTGGTCCA
* * * * *
33949456 GATCCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAAGTCCATATGCCTAA
192 G-TCCGATCTTAGACTGGGAATGAAATCCATATGCTTAGACTAGGGATGAACTCCATATGCCTAA
* * * * * *
33949521 GTTAACCCATGAAATGAGCGTGCAGGCACTCAGTCGAGCAGAGAGGCAGAATGTGCAGGCCGAGG
256 GTCAACCCACGAAATGAGCGTACAGGCACTCAGTCGAGCAGAGAGGCAGAATGAGCAAGCCAAGG
33949586 ATCA
321 ATCA
33949590 GCCTGGCCCC
Statistics
Matches: 268, Mismatches: 51, Indels: 11
0.81 0.15 0.03
Matches are distributed among these distances:
353 3 0.01
354 117 0.44
355 147 0.55
356 1 0.00
ACGTcount: A:0.25, C:0.27, G:0.27, T:0.21
Consensus pattern (354 bp):
TGCTGTCGATCCTACTACCACAACCCTCGATCCGACTAGGGCTTAGACATGGAATGAACTTCGTA
TCCCTAAGCCAACCCATGAAACGAGCATGCGGGCACTCAACCAGAAGGAAAGGCAAAATGCGCAA
GCCGAGGATCGGCCCAGTCCCCCTGCGTGCCACCGATCCTACCACCGCAACCCTTGGTCCAGTCC
GATCTTAGACTGGGAATGAAATCCATATGCTTAGACTAGGGATGAACTCCATATGCCTAAGTCAA
CCCACGAAATGAGCGTACAGGCACTCAGTCGAGCAGAGAGGCAGAATGAGCAAGCCAAGGATCAA
CCCGATCCCCCTCTGCGTGCTGTCGATCC
Found at i:33949697 original size:26 final size:26
Alignment explanation
Indices: 33949659--33949711 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33949649 CCGATCCGAT
*
33949659 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
33949685 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
33949711 C
1 C
33949712 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:33949785 original size:195 final size:197
Alignment explanation
Indices: 33949441--33949807 Score: 492
Period size: 195 Copynumber: 1.9 Consensus size: 197
33949431 ATCCTACCGC
* * *
33949441 CGTACCCCTTGGTCCGATCCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGGATGA
1 CGTAACCCTTGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGA
* ** * * *
33949506 AGTCCATATGCCTAAGTTAACCCATGAAATGAGCGTGCAGGCACTCAGTCGAGCAGAGAGGCAGA
66 ACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCACTCAGCCCAGCAGAGAGGCAGA
** * *
33949571 ATGTGCAGGCCGAGGATCAGCCTGG-CCCCC-CTGTGTGCTAATGATCTTGCTACTGGTCTTGCT
131 ATGCACAAGCCGAGGATCAGCCTGGTCCCCCTCTGCGTGCTAATGATCTTGCTACTGGTCTTGCT
33949634 GT
196 GT
*
33949636 CGTAACCCTTGGTCCGATCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACAT-GGAATG
1 CGTAACCCTTGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC-TGGGAATG
* * * *
33949700 AACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTGA-CCCAGTCGGAGAGGCA
65 AACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCACTCAGCCCAG-CAGAGAGGCA
* *
33949764 TG-ATGCACAAGCTGGGGATCAGCCTGGTCCCCCTCTGCGTGCTA
129 -GAATGCACAAGCCGAGGATCAGCCTGGTCCCCCTCTGCGTGCTA
33949808 CCAGTCCCGC
Statistics
Matches: 147, Mismatches: 20, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
194 3 0.02
195 128 0.87
196 7 0.05
197 9 0.06
ACGTcount: A:0.23, C:0.26, G:0.28, T:0.23
Consensus pattern (197 bp):
CGTAACCCTTGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGA
ACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCACTCAGCCCAGCAGAGAGGCAGA
ATGCACAAGCCGAGGATCAGCCTGGTCCCCCTCTGCGTGCTAATGATCTTGCTACTGGTCTTGCT
GT
Found at i:33950260 original size:317 final size:317
Alignment explanation
Indices: 33949685--33950293 Score: 728
Period size: 317 Copynumber: 1.9 Consensus size: 317
33949675 ACTCTGTATG
*
33949685 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTGACC
1 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTGACC
* * * * * * *
33949750 CAGTCGGAGAGGCATGATGCACAAGCTGGGGATCAGCCTGGTCCCCCTCTGCGTGCTACCAGTCC
66 CAGCCGGAGAGGCATAATGCACAAGCCGAGGATCAGCCCGATCCCCCTCTGCATGCTACCAGTCC
* *
33949815 CGCTGCCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAA
131 CGCTGCCACAACCCCCGATCCGACTGGGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAA
* * * * ** *
33949880 CCCACTAAACGGATGTACGGGCGCTCAGCCGGTCGAAGAGACAGATTGTGCAAGTCAGGGATCGG
196 CCCACGAAACGGACGTACGGGCGCTCAGCCGATCGAAGAGACAGAATGCACAAGCCAGGGATCGG
*
33949945 CCT-GATCCCCCCTATGTGCTGCCGATCCTACTGTCGCAACCCTCTATTCGGTCTGAT
261 CCTAG-TCCCCCCTACGTGCTGCCGATCCTACTGTCGCAACCCTCTATTCGGTCTGAT
* * * * *
33950002 CTTAGAC-TAGGAATGAACTTCATATGCCTAAGTCAACCCATGAAATGAGTGTGCGGGC-GTCGA
1 CTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACT-GA
* ** * * * * *
33950065 GCTGGCCGGAGAGGCATAATGCGCAAGCCGAGGATCGGCCCGATCCCCCTCTGCATTCTATCGGT
64 CCCAGCCGGAGAGGCATAATGCACAAGCCGAGGATCAGCCCGATCCCCCTCTGCATGCTACCAGT
* * *
33950130 CTCGCTGCCACAACCCCC-AGTTCGGCTGGGGCTTAGACATGGAAT-ACACTCCATAT-CCTTAA
129 CCCGCTGCCACAACCCCCGA-TCCGACTGGGGCTTAGACATGGAATGA-ACTCCATATGCC-TAA
* * ** *
33950192 GCCAACCCACGAAACCGG-CGTGCGGGCGCTCAGCCGATCGGAGAGGTAGAATGCACAAGCCGGG
191 GCCAACCCACGAAA-CGGACGTACGGGCGCTCAGCCGATCGAAGAGACAGAATGCACAAGCCAGG
* * *
33950256 GATCGGCCTAGTCCCTCCTGCGTGCTGTCGATCCTACT
255 GATCGGCCTAGTCCCCCCTACGTGCTGCCGATCCTACT
33950294 ACTGTAACCC
Statistics
Matches: 243, Mismatches: 42, Indels: 14
0.81 0.14 0.05
Matches are distributed among these distances:
316 6 0.02
317 233 0.96
318 4 0.02
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.20
Consensus pattern (317 bp):
CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTGACC
CAGCCGGAGAGGCATAATGCACAAGCCGAGGATCAGCCCGATCCCCCTCTGCATGCTACCAGTCC
CGCTGCCACAACCCCCGATCCGACTGGGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAA
CCCACGAAACGGACGTACGGGCGCTCAGCCGATCGAAGAGACAGAATGCACAAGCCAGGGATCGG
CCTAGTCCCCCCTACGTGCTGCCGATCCTACTGTCGCAACCCTCTATTCGGTCTGAT
Found at i:33950370 original size:26 final size:26
Alignment explanation
Indices: 33950319--33950371 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
33950309 CCAGTCCAAT
* **
33950319 CTTAGACTGGGAATGAGCTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
33950345 CTTAGACTAGGG-ATGAACTCCATATG
1 CTTAGACT-GGGAATGAACTCCATATG
33950371 C
1 C
33950372 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:33950703 original size:26 final size:26
Alignment explanation
Indices: 33950674--33950729 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
33950664 CCGATCTAAT
33950674 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
33950700 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
33950726 CTTA
1 CTTA
33950730 AGTCAACCCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:33950776 original size:355 final size:355
Alignment explanation
Indices: 33950137--33950799 Score: 861
Period size: 355 Copynumber: 1.9 Consensus size: 355
33950127 GGTCTCGCTG
* * *
33950137 CCACAACCCCCAGTTCGGCTGGGGCTTAGACATGGAATACACTCCATATCCTTAAGCCAACCCAC
1 CCACAACCCCCAGTCCGGCTAGGGCATAGACATGGAATACACTCCATATCCTTAAGCCAACCCAC
* * * * *
33950202 GAAACCGGCGTGCGGGCGCTCAGCCGATCGGAGAGGTAGAATGCACAAGCCGGGGATCGGCCTAG
66 GAAACCGGCGTGCGGGCACTCAACCGATCGGAGAGGCAGAATGCACAAGCCGAGGATCAGCCTAG
* **
33950267 TCCCTCCTGCGTGCTGTCGATCCTACTACTGTAACCCTCGGTCCAGTCCAATCTTAGACTGGGAA
131 TCCCTCCTGCGTGCTGTCGATCCCACTACCATAACCCTCGGTCCAGTCCAATCTTAGACTGGGAA
* *
33950332 TGAGCTCTGTATGCTTAGACTAGGGATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCAT
196 TGAACTCCGTATGCTTAGACTAGGGATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCAT
** *
33950397 ACGGCCACTCAGCCGATTAGAGAGGCATAATGCGCAAGTCAGGGATCAGCCCGATCCGCCTCTGC
261 ACGGCCACTCAGCCGAGCAGAGAGGCAGAATGCGCAAGTCAGGGATCAGCCCGATCCGCCTCTGC
33950462 GTGCTGTCGATCCCGCTGCCGGTCCTGCTA
326 GTGCTGTCGATCCCGCTGCCGGTCCTGCTA
* * *
33950492 CCACAACCCTCGGTCCGGCTAGGGCATAGACATGGAATGA-ACTCCGTATGCC-TAAGCCAACCC
1 CCACAACCCCCAGTCCGGCTAGGGCATAGACATGGAAT-ACACTCCATAT-CCTTAAGCCAACCC
* * * * *
33950555 ATGAAA-CGAGCGTGCGGGCACTCAATCGGTCGGAGAGGCAGAATGCGCAAGCCGAGGATCAGCT
64 ACGAAACCG-GCGTGCGGGCACTCAACCGATCGGAGAGGCAGAATGCACAAGCCGAGGATCAGCC
* * *
33950619 TGGTCCAC-CCTGCGTGCTGTCGATCCCGCTACCATAACCCTCGGTCC-GATCTAATCTTAGACT
128 TAGTCC-CTCCTGCGTGCTGTCGATCCCACTACCATAACCCTCGGTCCAG-TCCAATCTTAGACT
* * * * *
33950682 GGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTTCGTATGCTTAAGTCAACCCAC-ATAAT
191 GGGAATGAACTCCGTATGCTTAGACTAGGGATGAACTCCATATGCCTAAGTCAACCCACGA-AAC
* * * * * * * * *
33950746 GAGCGTGCGGGCGCTCAGTCGAGCAGAGAGGTAGGATGCGCATGTCGGGGATCA
255 GAGCATACGGCCACTCAGCCGAGCAGAGAGGCAGAATGCGCAAGTCAGGGATCA
33950800 AACAGGTGGT
Statistics
Matches: 261, Mismatches: 41, Indels: 12
0.83 0.13 0.04
Matches are distributed among these distances:
354 4 0.02
355 253 0.97
356 4 0.02
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (355 bp):
CCACAACCCCCAGTCCGGCTAGGGCATAGACATGGAATACACTCCATATCCTTAAGCCAACCCAC
GAAACCGGCGTGCGGGCACTCAACCGATCGGAGAGGCAGAATGCACAAGCCGAGGATCAGCCTAG
TCCCTCCTGCGTGCTGTCGATCCCACTACCATAACCCTCGGTCCAGTCCAATCTTAGACTGGGAA
TGAACTCCGTATGCTTAGACTAGGGATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCAT
ACGGCCACTCAGCCGAGCAGAGAGGCAGAATGCGCAAGTCAGGGATCAGCCCGATCCGCCTCTGC
GTGCTGTCGATCCCGCTGCCGGTCCTGCTA
Found at i:33951618 original size:26 final size:26
Alignment explanation
Indices: 33951581--33951630 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
33951571 CTAGTTTGAT
* *
33951581 CTTAGACTGGGAATGAATTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
33951607 CTTAGACAGGGAATGAACTCCGTA
1 CTTAGACAGGGAATGAACTCCGTA
33951631 CGCCTAAGCC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Found at i:33951707 original size:184 final size:184
Alignment explanation
Indices: 33951395--33951789 Score: 569
Period size: 184 Copynumber: 2.1 Consensus size: 184
33951385 GTGGCTCAAA
** * *
33951395 ATCTTAGACTGGGAATGAACTCTATATGCTTAGACATGGAATGAACTCCGTACGCCTAAGCCAAC
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAGGGAATGAACTCCGTACGCCTAAGCCAAA
* * *
33951460 TCACAAAACGAGCGTACGGGCGCTCAGTCGGTCGAAGAGGTAGAATGCGCAAGCTGGGGATCGGC
66 TCACAAAACGAGCGTACGGGCGCTCAGCCGGTCGAAGAGGCAGAATGCGCAAGCTGAGGATCGGC
* * * * *
33951525 CTGGTCCCCCCTTCATGCTGTCGATCCTTCTACCGCAACCCTCCGTCTAGTTTG
131 CAGGTCCCCCCTGCATGCTGTCGATCCTGCTACCACAACCCTCCGTCTAGTCTG
*
33951579 ATCTTAGACTGGGAATGAATTCCGTATGCTTAGACAGGGAATGAACTCCGTACGCCTAAGCCAAA
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAGGGAATGAACTCCGTACGCCTAAGCCAAA
* *
33951644 TCACGAAACGAGCGTACGGGCGCTTAGCCGGTCGGAA-AGGCAGAATGCGCAAG-TCGAGGATCG
66 TCACAAAACGAGCGTACGGGCGCTCAGCCGGTC-GAAGAGGCAGAATGCGCAAGCT-GAGGATCG
* * * * * *
33951707 GCCAGGTCCCCCCTGCGTGCTGTTGATCCTGCTATCACAACCCTCGGTTTGGTCTG
129 GCCAGGTCCCCCCTGCATGCTGTCGATCCTGCTACCACAACCCTCCGTCTAGTCTG
33951763 ATCTTAGACTGGGAATGAACTCCGTAT
1 ATCTTAGACTGGGAATGAACTCCGTAT
33951790 ACCTAATTCA
Statistics
Matches: 187, Mismatches: 22, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
183 1 0.01
184 183 0.98
185 3 0.02
ACGTcount: A:0.24, C:0.27, G:0.26, T:0.23
Consensus pattern (184 bp):
ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAGGGAATGAACTCCGTACGCCTAAGCCAAA
TCACAAAACGAGCGTACGGGCGCTCAGCCGGTCGAAGAGGCAGAATGCGCAAGCTGAGGATCGGC
CAGGTCCCCCCTGCATGCTGTCGATCCTGCTACCACAACCCTCCGTCTAGTCTG
Found at i:33952105 original size:158 final size:155
Alignment explanation
Indices: 33951607--33952105 Score: 459
Period size: 158 Copynumber: 3.2 Consensus size: 155
33951597 ATTCCGTATG
* * ** * *
33951607 CTTAGACAGGGAATGAACTCCGTACGCCTAAGCCAAATCACGAAACGAGCGTACGGGCGCTTAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAGC
* * * * *
33951672 CG-GTCGGAAAGGCAGAATGCGCAAG-TCGAGGATCGGCCAGGTCCCCCCTGCGTGCTGTTGATC
66 CGACT-GGAGAGGCAGAATGCGCAAGCT-GAGGATCGGCCCGGT-CCCCCTGCGTGCTATCGATC
* *
33951735 CTGCTATCACAACCCTCGGTTTGGTCTGAT
128 CTGCT-TCACAACCCTC-GTCTGGTTTGAT
* ** * * *
33951765 CTTAGACTGGGAATGAACTCCGTATACCTAATTCAACCCACGAAATGAGAGTACGGGCACTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAGC
* * * * * * * * *
33951830 CGACCGGAGAGGCATAATACGCAAGC-CAGGGATCGACCCGAT-CCTCTGCGTGCTATCGGTCTT
66 CGACTGGAGAGGCAGAATGCGCAAGCTGA-GGATCGGCCCGGTCCCCCTGCGTGCTATCGATCCT
* * **
33951893 GCTTCCACAACCCTCGATCTGGCTGGGG
130 GCTT-CACAACCCTCG-TCTGGTTTGAT
* * * * *
33951921 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCAATCAA
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAG
* * * * *
33951985 CCGACTGGAGAGGTAGAATGCGCAGGCTGAGGACCGGCCCGGTCCCCCATACGTGCTACCGATCC
65 CCGACTGGAGAGGCAGAATGCGCAAGCTGAGGATCGGCCCGGTCCCCC-TGCGTGCTATCGATCC
* *
33952050 TGCTGTCGCAACCCTCAGTCCGGTTTGAT
129 TGCT-TCACAACCCTC-GTCTGGTTTGAT
33952079 CTTAGACTGGGAATGAACTCCGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
33952106 TTAGACTGGG
Statistics
Matches: 266, Mismatches: 63, Indels: 24
0.75 0.18 0.07
Matches are distributed among these distances:
155 2 0.01
156 117 0.44
157 7 0.03
158 138 0.52
159 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.19
Consensus pattern (155 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAGC
CGACTGGAGAGGCAGAATGCGCAAGCTGAGGATCGGCCCGGTCCCCCTGCGTGCTATCGATCCTG
CTTCACAACCCTCGTCTGGTTTGAT
Found at i:33952108 original size:26 final size:26
Alignment explanation
Indices: 33952079--33952131 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
33952069 CCGGTTTGAT
33952079 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
33952105 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
33952131 C
1 C
33952132 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:33953327 original size:26 final size:26
Alignment explanation
Indices: 33953295--33953344 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
33953285 CGGTACAATC
*
33953295 TTAGACTGGGAATGAACTCTGTATCT
1 TTAGACTGGGAATGAACTCCGTATCT
*
33953321 TTAGACTGGGGATGAACTCCGTAT
1 TTAGACTGGGAATGAACTCCGTAT
33953345 GCCTAAGTCA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.32
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATCT
Found at i:33953836 original size:26 final size:26
Alignment explanation
Indices: 33953807--33953859 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
33953797 CCAGTCTGAT
*
33953807 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
33953833 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
33953859 C
1 C
33953860 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:33954227 original size:26 final size:26
Alignment explanation
Indices: 33954175--33954227 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
33954165 CCAGTTCGAT
*
33954175 CTTAGACTGGGATTGAACTCTGCATG
1 CTTAGACTGGGATTGAACTCTACATG
*
33954201 CTTAGACTGGAGA-TGAACTCTATATG
1 CTTAGACTGG-GATTGAACTCTACATG
33954227 C
1 C
33954228 CTATGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGATTGAACTCTACATG
Found at i:33954946 original size:26 final size:26
Alignment explanation
Indices: 33954909--33954960 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
33954899 GCTTAATATT
33954909 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
33954935 TTAGACAT-GGAATGAACTCCGTATGC
1 TTAGAC-TGGGAATGAACTCCGTATGC
33954961 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:33956672 original size:158 final size:159
Alignment explanation
Indices: 33956338--33956742 Score: 478
Period size: 158 Copynumber: 2.6 Consensus size: 159
33956328 CTTAGACATT
* * * * * * *
33956338 GAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAACGTGCAGGCGCTCAGCTAGCCGGAGA
1 GAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCAGGCGCTGAGCCAGCCGAAGA
* * ** * * *
33956403 GGTAGAATGCGTAAGCCGGGGATCGACCCAGTCCCCCCCTACGTGCTGTTGATCCTACTACCATA
66 GGCATAATGCACAAGCTGGGGATCGACCCAGTCCCCCCCTACGTGCTGTCGATCCTACTACCACA
* *
33956468 ACCCTCAGTCTGGACCGATCTTACATTGG
131 ACCCTCAGTCCGGACCGATCTTACACTGG
* *
33956497 GAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGTTGAGCCAGCCGAAGA
1 GAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCAGGCGCTGAGCCAGCCGAAGA
* * * * *
33956562 GGCATAATGCACAAGCTGGGGATCGACCC-GAT-CCCCCCTGA-TTGCTGTCGATCTTGCTATCG
66 GGCATAATGCACAAGCTGGGGATCGACCCAG-TCCCCCCCT-ACGTGCTGTCGATCCTACTACCA
*
33956624 CAACCCTCAGTCCGGTA-TGATCTTACACTGG
129 CAACCCTCAGTCCGG-ACCGATCTTACACTGG
* * * *
33956655 GAATGAACTCCGTATGCATAAGTCAACCCACAAAATGAGCGTGCAGGCACTGAGCC-GATCGAAG
1 GAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCAGGCGCTGAGCCAG-CCGAAG
*
33956719 AGGCATAATGCCCAAGCTGGGGAT
65 AGGCATAATGCACAAGCTGGGGAT
33956743 TAGCCTGGTT
Statistics
Matches: 211, Mismatches: 31, Indels: 9
0.84 0.12 0.04
Matches are distributed among these distances:
157 1 0.00
158 127 0.60
159 83 0.39
ACGTcount: A:0.27, C:0.29, G:0.26, T:0.19
Consensus pattern (159 bp):
GAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCAGGCGCTGAGCCAGCCGAAGA
GGCATAATGCACAAGCTGGGGATCGACCCAGTCCCCCCCTACGTGCTGTCGATCCTACTACCACA
ACCCTCAGTCCGGACCGATCTTACACTGG
Found at i:33956998 original size:26 final size:26
Alignment explanation
Indices: 33956962--33957014 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
33956952 CCGATCTGAT
33956962 CTTAGACTGGGAATAAACTTCATATG
1 CTTAGACTGGGAATAAACTTCATATG
* * * *
33956988 CTTAGATTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATAAACTTCATATG
33957014 C
1 C
33957015 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTTCATATG
Found at i:33957512 original size:157 final size:158
Alignment explanation
Indices: 33957169--33957512 Score: 372
Period size: 159 Copynumber: 2.2 Consensus size: 158
33957159 TACAGTTGGG
* ** * *
33957169 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAATGAGTGTGCGGGTGCTGAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGCATGCGGGTGCTCAA
* * * *
33957234 CCGGCTGGAAAGGCATAATGTGCAAGCCGGGGATCGCCCCATTCCCCCTGTGCGTGCTGTCGCTC
66 CCGGCTGGAAAGGCAAAATGT-CAAGCCGGGGATCGCCCCATTCCCCCTGTGCATGCTATCGATC
* * *
33957299 CCGCTGCCACAACCCTCGGTCTAGCTGGG
130 CCACTGCCACAACCCTCGGTCTAGCTCGA
* * * *
33957328 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGTGTTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGCATGCGGGTGCTCAA
* * * * *
33957393 CTGGCTGGAAAGGCAAAATG-CTAAGCCGGGTATCGGCCCGA-TCCCTC-GTGCATGCTATTGAT
66 CCGGCTGGAAAGGCAAAATGTC-AAGCCGGGGATC-GCCCCATTCCCCCTGTGCATGCTATCGAT
* ** * *
33957455 CCTACTGCCGTAACCCTCGGTCTGGTTCGA
129 CCCACTGCCACAACCCTCGGTCTAGCTCGA
* *
33957485 TCTTAGAC-TAGGAATGAACTCTGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
33957513 TTAGACTGGG
Statistics
Matches: 153, Mismatches: 29, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
156 1 0.01
157 57 0.37
158 16 0.10
159 79 0.52
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.22
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGCATGCGGGTGCTCAA
CCGGCTGGAAAGGCAAAATGTCAAGCCGGGGATCGCCCCATTCCCCCTGTGCATGCTATCGATCC
CACTGCCACAACCCTCGGTCTAGCTCGA
Found at i:33957515 original size:26 final size:26
Alignment explanation
Indices: 33957486--33957538 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
33957476 CTGGTTCGAT
*
33957486 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
33957512 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
33957538 C
1 C
33957539 CTAAGTCAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:33959541 original size:456 final size:456
Alignment explanation
Indices: 33958688--33959604 Score: 1807
Period size: 456 Copynumber: 2.0 Consensus size: 456
33958678 GATGCTATGG
33958688 ACCTCCTTCTCATATGAGGCCCTTGCTCCCAATGGTGCACGCTTTGACTCTACCCATCCTGGATC
1 ACCTCCTTCTCATATGAGGCCCTTGCTCCCAATGGTGCACGCTTTGACTCTACCCATCCTGGATC
33958753 TCTCTCATCCTCATAGAACGGCTTAAGCATGCTCACATGGAACAGCGAGTGTACCCTCAGCTTGG
66 TCTCTCATCCTCATAGAACGGCTTAAGCATGCTCACATGGAACAGCGAGTGTACCCTCAGCTTGG
33958818 GTGGCATATCCAGCTTGTAGGCAACCTTGCCTACCCTCTTGACTACTCGAAAAGGTCCTTTATAC
131 GTGGCATATCCAGCTTGTAGGCAACCTTGCCTACCCTCTTGACTACTCGAAAAGGTCCTTTATAC
33958883 CTCCAGACTAGGCTTTTGTATAGCCCCTTGTGGTGCACAATGGGATGTAGCTTCACCAACACCAA
196 CTCCAGACTAGGCTTTTGTATAGCCCCTTGTGGTGCACAATGGGATGTAGCTTCACCAACACCAA
*
33958948 GTCTCCAACCTGGAACTGCACGTCCCACCTATTCTGGTCTGCCCACTTCTTTGACCTCTTGGCCG
261 GTCTCCAACCTGGAACTGCACGTCCCACCTATTCTGGTCTGCCCACTTCTTTGACCTCTTAGCCG
*
33959013 CCTTGTGTAGACAAACTCTGGCCAAGTTAGTTTGCTCCTGCCATGCCTTGGCAAACTTGTATGCT
326 CCTTGTGTAGACAAACTCTGGCCAAGTTAGTTTGCTCCTGCCATGCCTTGGCAAACTTGTATACT
*
33959078 GCTAGATTTGGCCCTGTATAACCTGTAGCAATCAAACCGGGTGTTAGTGGTTATTGCCCTGTCAC
391 GCTAGATTTGGCCCTGTATAACCTGTAGCAATCAAACCGAGTGTTAGTGGTTATTGCCCTGTCAC
33959143 A
456 A
33959144 ACCTCCTTCTCATATGAGGCCCTTGCTCCCAATGGTGCACGCTTTGACTCTACCCATCCTGGATC
1 ACCTCCTTCTCATATGAGGCCCTTGCTCCCAATGGTGCACGCTTTGACTCTACCCATCCTGGATC
33959209 TCTCTCATCCTCATAGAACGGCTTAAGCATGCTCACATGGAACAGCGAGTGTACCCTCAGCTTGG
66 TCTCTCATCCTCATAGAACGGCTTAAGCATGCTCACATGGAACAGCGAGTGTACCCTCAGCTTGG
33959274 GTGGCATATCCAGCTTGTAGGCAACCTTGCCTACCCTCTTGACTACTCGAAAAGGTCCTTTATAC
131 GTGGCATATCCAGCTTGTAGGCAACCTTGCCTACCCTCTTGACTACTCGAAAAGGTCCTTTATAC
33959339 CTCCAGACTAGGCTTTTGTATAGCCCCTTGTGGTGCACAATGGGATGTAGCTTCACCAACACCAA
196 CTCCAGACTAGGCTTTTGTATAGCCCCTTGTGGTGCACAATGGGATGTAGCTTCACCAACACCAA
33959404 GTCTCCAACCTGGAACTGCACGTCCCACCTATTCTGGTCTGCCCACTTCTTTGACCTCTTAGCCG
261 GTCTCCAACCTGGAACTGCACGTCCCACCTATTCTGGTCTGCCCACTTCTTTGACCTCTTAGCCG
33959469 CCTTGTGTAGACAAACTCTGGCCAAGTTAGTTTGCTCCTGCCATGCCTTGGCAAACTTGTATACT
326 CCTTGTGTAGACAAACTCTGGCCAAGTTAGTTTGCTCCTGCCATGCCTTGGCAAACTTGTATACT
33959534 GCTAGATTTGGCCCTGTATAACCTGTAGCAATCAAACCGAGTGTTAGTGGTTATTGCCCTGTCAC
391 GCTAGATTTGGCCCTGTATAACCTGTAGCAATCAAACCGAGTGTTAGTGGTTATTGCCCTGTCAC
33959599 A
456 A
33959600 ACCTC
1 ACCTC
33959605 AAATGGGCTC
Statistics
Matches: 458, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
456 458 1.00
ACGTcount: A:0.21, C:0.30, G:0.20, T:0.29
Consensus pattern (456 bp):
ACCTCCTTCTCATATGAGGCCCTTGCTCCCAATGGTGCACGCTTTGACTCTACCCATCCTGGATC
TCTCTCATCCTCATAGAACGGCTTAAGCATGCTCACATGGAACAGCGAGTGTACCCTCAGCTTGG
GTGGCATATCCAGCTTGTAGGCAACCTTGCCTACCCTCTTGACTACTCGAAAAGGTCCTTTATAC
CTCCAGACTAGGCTTTTGTATAGCCCCTTGTGGTGCACAATGGGATGTAGCTTCACCAACACCAA
GTCTCCAACCTGGAACTGCACGTCCCACCTATTCTGGTCTGCCCACTTCTTTGACCTCTTAGCCG
CCTTGTGTAGACAAACTCTGGCCAAGTTAGTTTGCTCCTGCCATGCCTTGGCAAACTTGTATACT
GCTAGATTTGGCCCTGTATAACCTGTAGCAATCAAACCGAGTGTTAGTGGTTATTGCCCTGTCAC
A
Found at i:33963445 original size:26 final size:26
Alignment explanation
Indices: 33963409--33963461 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
33963399 GTTGACTTAG
*
33963409 GCATATGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
*
33963435 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
33963461 G
1 G
33963462 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:33963807 original size:26 final size:26
Alignment explanation
Indices: 33963777--33963829 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
33963767 GTTGACTTAG
33963777 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
33963803 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
33963829 G
1 G
33963830 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:33966773 original size:26 final size:26
Alignment explanation
Indices: 33966737--33966789 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
33966727 CCGGTTTGAT
*
33966737 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
33966763 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
33966789 C
1 C
33966790 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:33968173 original size:26 final size:26
Alignment explanation
Indices: 33968144--33968196 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33968134 CCGATTCAAT
33968144 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
33968170 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCCGTATG
33968196 C
1 C
33968197 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:33968204 original size:185 final size:191
Alignment explanation
Indices: 33967984--33968436 Score: 519
Period size: 185 Copynumber: 2.4 Consensus size: 191
33967974 TCTGACTGGG
* * * *
33967984 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCAGATGCTCAG
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGTGCTCAG
* *
33968049 TCGGTCGGAGAGGCAGAATGCACAAGCCGA-GGATCGACCCGGTCCCCCCTTGCGTGCTACCGAT
66 TCGGTCGGAGAGGCAGAATGCACAAGCC-ATGGATCGACCCGATCCCCCCTTGCGAGCTACCGAT
* * *
33968113 -C-CTA-C-TG-T-CGCAACCTTCGGTCCGATTCAATCTTAGACTGGGAATGAACTCCGTAT
130 CCACTAGCTTGCTACGCAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCATAT
* *
33968169 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGCG-AGTGTGGGTGCTCA
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCA-TGCGGGTGCTCA
* ** * ** * * **
33968233 GCCGACCGGAGAGGTAGAATGCGTAAGCCATGGATCGGCCCGATCCCCCCTTGTGAGCTGTCGAT
65 GTCGGTCGGAGAGGCAGAATGCACAAGCCATGGATCGACCCGATCCCCCCTTGCGAGCTACCGAT
* *
33968298 CCTACTACTGGTCTTGCTACCGCAACCCTCGGTCCGGTCCTATCTTAGACTGGGAATGAACTCCA
130 CC-ACTA---G-CTTGCTA-CGCAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCA
33968363 TAT
189 TAT
* * * *
33968366 GCTTAGACATGGAATGAACT-TCGTTTGCCTAAGCCAACCCATGAAACAAGCGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCT-GTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGTGCTCA
33968430 GTCGGTC
65 GTCGGTC
33968437 CCCTCTGCGT
Statistics
Matches: 220, Mismatches: 32, Indels: 20
0.81 0.12 0.07
Matches are distributed among these distances:
184 2 0.01
185 107 0.49
186 1 0.00
188 3 0.01
193 1 0.00
194 2 0.01
195 1 0.00
196 1 0.00
197 102 0.46
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (191 bp):
GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGTGCTCAG
TCGGTCGGAGAGGCAGAATGCACAAGCCATGGATCGACCCGATCCCCCCTTGCGAGCTACCGATC
CACTAGCTTGCTACGCAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCATAT
Found at i:33969957 original size:159 final size:158
Alignment explanation
Indices: 33969530--33969979 Score: 446
Period size: 159 Copynumber: 2.8 Consensus size: 158
33969520 AACTTCGTAT
*
33969530 GCTTAGACATGGAATGAACTCCGTATGCCTATGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCC-TATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * *
33969595 TCGGCTGGAGAGGTAGAATGCGCAACT-GAGGATCGACCCGATCCCCC-CTGTATACTGTCGATC
65 TCGGCCGGAGAGGCAGAATGCGCAAGTCGAGGATCGGCCCGATCCCCCTCTGTGTACTGTCGATC
*** ** *
33969658 CTGCTATTGCAACCCTTGGTCCGGTCTGA
130 CTGCTACCACAACCCTCAGTCCAGTCTGA
* * * * * * * *
33969687 TCTTACAC-TGGGAATGAACTTCATATGCATAAGTCAACCCATGAAACGAGCGTACGGGCACTGA
1 GCTTAGACAT-GGAATGAAC-TCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
* * * * * * * * *
33969751 GCCAGTCGAAGACGCATAATGCGCAAGTCAAGGATCAGCCCGATCCCCCTCTGTGTGCTGTCGAT
64 GTCGGCCGGAGAGGCAGAATGCGCAAGTCGAGGATCGGCCCGATCCCCCTCTGTGTACTGTCGAT
* * *
33969816 CCTGTTGCCACAACCCTCAGTCCAG-CTGGG
129 CCTGCTACCACAACCCTCAGTCCAGTCT-GA
33969846 GCTTAGACATGGAATGAACTGCCTATGCCTAAGCCAACCCATGAAAC-AGGCGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACT-CCTATGCCTAAGCCAACCCATGAAACGA-GCGTGCGGGCGCTCA
** * * * *
33969910 GTCGGCCGGAGAGGCAGAATGCATAAGTCGGGGATCGG-CCTAGT-CCCCTCTGCGTACTATCGA
64 GTCGGCCGGAGAGGCAGAATGCGCAAGTCGAGGATCGGCCCGA-TCCCCCTCTGTGTACTGTCGA
33969973 TCCTGCT
128 TCCTGCT
33969980 GTCGCCACCC
Statistics
Matches: 228, Mismatches: 56, Indels: 17
0.76 0.19 0.06
Matches are distributed among these distances:
156 1 0.00
157 69 0.30
158 48 0.21
159 109 0.48
160 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.21
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGT
CGGCCGGAGAGGCAGAATGCGCAAGTCGAGGATCGGCCCGATCCCCCTCTGTGTACTGTCGATCC
TGCTACCACAACCCTCAGTCCAGTCTGA
Found at i:33971310 original size:26 final size:26
Alignment explanation
Indices: 33971258--33971310 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
33971248 GGCTCAAAAT
*
33971258 CTTAGACTGAGAATGAACTCTGCATG
1 CTTAGACTGAGAATGAACTCCGCATG
*
33971284 CTTAGACATG-GAATGAACTCCGTATG
1 CTTAGAC-TGAGAATGAACTCCGCATG
33971310 C
1 C
33971311 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGCATG
Found at i:33971672 original size:158 final size:158
Alignment explanation
Indices: 33971283--33971678 Score: 451
Period size: 159 Copynumber: 2.5 Consensus size: 158
33971273 AACTCTGCAT
*
33971283 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAA-CAGCGTGCGGGTGCTCAG
* * ** * * *
33971348 TCGGCCGAAGAGTTAGAATGTGCAAGCCGAGGATCAATCCGATCCCCCTCTGCGTGCTGCCGGTC
65 TCGGTCGGAGAGGCAGAATGCGCAAGCCGAGGATCAATCCGATCCCCCTCTGCGTGCTACCGATC
*
33971413 CTGCTGCCACAACCCTCGATCCAGCTGGG
130 CTGCTGCCACAACCCTCGATCCAGCTGGA
* * * * *
33971442 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAGCCACGAAACGGCCATGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAG-CGTGCGGGTGCTCAG
* * ** *
33971507 -CTAGTCGGAGAGGCAGAATGCGCAAGCTGAGGATCGGTCTGATCCCCC-CTGCGTGCTACCGAT
65 TC-GGTCGGAGAGGCAGAATGCGCAAGCCGAGGATCAATCCGATCCCCCTCTGCGTGCTACCGAT
* ** *
33971570 CCTGCTGTCTTAA-CCTACGGTCCAGTCT-GA
129 CCTGCTGCCACAACCCT-CGATCCAG-CTGGA
* * * *
33971600 TCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTACGGGTGCTCA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAC-AGCGTGCGGGTGCTCA
33971664 GTCGGTCGGAGAGGC
64 GTCGGTCGGAGAGGC
33971679 CCACCGGAGA
Statistics
Matches: 197, Mismatches: 33, Indels: 15
0.80 0.13 0.06
Matches are distributed among these distances:
157 4 0.02
158 96 0.49
159 97 0.49
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAGCGTGCGGGTGCTCAGT
CGGTCGGAGAGGCAGAATGCGCAAGCCGAGGATCAATCCGATCCCCCTCTGCGTGCTACCGATCC
TGCTGCCACAACCCTCGATCCAGCTGGA
Found at i:33971973 original size:26 final size:26
Alignment explanation
Indices: 33971944--33971996 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
33971934 CCGATTTGAT
33971944 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
33971970 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
33971996 C
1 C
33971997 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:33978609 original size:26 final size:26
Alignment explanation
Indices: 33978571--33978623 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
33978561 GGCTTAAAAT
33978571 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
33978597 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
33978623 C
1 C
33978624 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:33979099 original size:158 final size:159
Alignment explanation
Indices: 33978596--33979124 Score: 558
Period size: 158 Copynumber: 3.3 Consensus size: 159
33978586 AACTCCGTAT
*
33978596 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCC-ACGAAACGAGCGTGCGGTCGCTCG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCTACGAAACGAGCGTGCGGGCGCT-G
* * * * * *
33978660 A-CCGATCGGAGAGGTAGAATGCACAAGCCGGGGATCGACCT-GGTCCCCCCTACGTGCTGTTGA
65 AGCCGACCGAAGAGGTAGAATGCACAAGTCGGGGATC-AGCTCGGTCCCCCTTACGTGCTGTCGA
* ****
33978723 TCCTGCTGCCACAACCCTCAATCTGATCAAT
129 TCCTGCTGCCACAACCCTCAGTCTGATTGGG
* * * * * *
33978754 TCTTAGAC-TGGGAATGAACTTCGTATGCGTAAGTCAA-CCTATGAAACGAGCGTGTGGGCGCTG
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCTACGAAACGAGCGTGCGGGCGCTG
* * * * * ** **
33978817 AGCCGGCCGAAGAGGTATAATGCGCAAGTCGGGGAT-AGGC-CTGATCTCCCTCTGTGTGCTACC
65 AGCCGACCGAAGAGGTAGAATGCACAAGTCGGGGATCA-GCTC-GGTCCCCCT-TACGTGCTGTC
* * * *
33978880 GGT-CTCACTGCCACAACCCTCAGTCCGACTGGG
127 GATCCT-GCTGCCACAACCCTCAGTCTGATTGGG
* *
33978913 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCTA-GAAATG-GCCGTGCGGGCGCTG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCTACGAAACGAG-CGTGCGGGCGCTG
* *
33978976 AGCCGACCGAAGAGGCAGAATGCACAAGTCGGGGATCAGCTCGGGCCCCCTTACGTGCTGTCGAT
65 AGCCGACCGAAGAGGTAGAATGCACAAGTCGGGGATCAGCTCGGTCCCCCTTACGTGCTGTCGAT
* * *
33979041 CCTGCTGCCACAACCTTCGGTCTGGTTGGG
130 CCTGCTGCCACAACCCTCAGTCTGATTGGG
*
33979071 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCC-ACGAAACGAGCGTG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCTACGAAACGAGCGTG
33979125 TGGGTGCTCA
Statistics
Matches: 296, Mismatches: 59, Indels: 32
0.76 0.15 0.08
Matches are distributed among these distances:
156 1 0.00
157 7 0.02
158 164 0.55
159 117 0.40
160 7 0.02
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.20
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCTACGAAACGAGCGTGCGGGCGCTGA
GCCGACCGAAGAGGTAGAATGCACAAGTCGGGGATCAGCTCGGTCCCCCTTACGTGCTGTCGATC
CTGCTGCCACAACCCTCAGTCTGATTGGG
Found at i:33979148 original size:158 final size:158
Alignment explanation
Indices: 33978596--33979216 Score: 533
Period size: 158 Copynumber: 3.9 Consensus size: 158
33978586 AACTCCGTAT
* * *
33978596 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGTCGCTCGA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCGCTCAA
* * * * * * *
33978661 CCGATCGGAGAGGTAGAATGCACAAGCCGGGGATCGACCT-GGTCCCCCCTACGTGCTGTTGATC
66 CCGACCGAAGAGGCAGAATGCACAAGTCGGGGATC-AGCTCGGTCCCCCTTACGTGCTGTCGATC
* ****
33978725 CTGCTGCCACAACCCTCAATCTGATCAAT
130 CTGCTGCCACAACCCTCAGTCTGATTGGG
* * * * * * *
33978754 TCTTAGAC-TGGGAATGAACTTCGTATGCGTAAGTCAACCTATGAAACGAGCGTGTGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCGCTCA
* * * * * * * ** **
33978818 GCCGGCCGAAGAGGTATAATGCGCAAGTCGGGGAT-AGGC-CTGATCTCCCTCTGTGTGCTACCG
65 ACCGACCGAAGAGGCAGAATGCACAAGTCGGGGATCA-GCTC-GGTCCCCCT-TACGTGCTGTCG
* * * *
33978881 GT-CTCACTGCCACAACCCTCAGTCCGACTGGG
127 ATCCT-GCTGCCACAACCCTCAGTCTGATTGGG
* * * *
33978913 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCTA-GAAATG-GCCGTGCGGGCGCTG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCC-ACGAAACGAG-CGTGTGGGCGCTC
* *
33978976 AGCCGACCGAAGAGGCAGAATGCACAAGTCGGGGATCAGCTCGGGCCCCCTTACGTGCTGTCGAT
64 AACCGACCGAAGAGGCAGAATGCACAAGTCGGGGATCAGCTCGGTCCCCCTTACGTGCTGTCGAT
* * *
33979041 CCTGCTGCCACAACCTTCGGTCTGGTTGGG
129 CCTGCTGCCACAACCCTCAGTCTGATTGGG
* *
33979071 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCGCTCAA
** * * * * * * *
33979136 CCGGTCGGAGAGGC-GTAATGCGCAAGCCGAGGATC-GACCCGATCCCTCC-TGCGTGCTGTCGA
66 CCGACCGAAGAGGCAG-AATGCACAAGTCGGGGATCAG-CTCGGTCCC-CCTTACGTGCTGTCGA
* * *
33979198 TCCTACTGTCGCAACCCTC
128 TCCTGCTGCCACAACCCTC
33979217 GATCCAGTCT
Statistics
Matches: 364, Mismatches: 82, Indels: 34
0.76 0.17 0.07
Matches are distributed among these distances:
156 1 0.00
157 5 0.01
158 233 0.64
159 121 0.33
160 4 0.01
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCGCTCAA
CCGACCGAAGAGGCAGAATGCACAAGTCGGGGATCAGCTCGGTCCCCCTTACGTGCTGTCGATCC
TGCTGCCACAACCCTCAGTCTGATTGGG
Found at i:33979266 original size:26 final size:26
Alignment explanation
Indices: 33979230--33979279 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
33979220 CCAGTCTGAT
*
33979230 CTTAGTCTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCTATATG
* *
33979256 CTTAGACTGGGGATGAGCTCTATA
1 CTTAGACTGGGAATGAACTCTATA
33979280 CGCCTAAGTC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTATATG
Found at i:33979588 original size:342 final size:342
Alignment explanation
Indices: 33978939--33979601 Score: 734
Period size: 342 Copynumber: 1.9 Consensus size: 342
33978929 AACTCCCTAT
*
33978939 GCCTAAGCCAACCCTAGAAATGGCCGTGCGGGCGCTGAGCCGACCGAAGAGGCAGAATGCACAAG
1 GCCTAAGCCAACCCTAGAAATGGCCATGCGGGCGCTGAGCCGACCGAAGAGGCAGAATGCACAAG
* * * * * **
33979004 TCGGGGATCAGCTCGGGCCCCCTTACGTGCTGTCGATCCTGCTGCCACAACCTTCGGTCTGGTTG
66 TCGAGGATCAGCCCGGGCCCCCTTACGTGCTGTCGATCCTACTACCACAACCTTCGGTCTGATCC
* * * * **
33979069 GGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGTGCTC
131 GAGCTTAGACAGGGAATGAACTCTGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCACTC
* *
33979134 AACCGGTCGGAGAGGCGTAATGCGCAAGCCGAGGATCGACCCGATCCCTCCTGCGTGCTGTCGAT
196 AACCGGTCGAAGAGGCATAATGCGCAAGCCGAGGATCGACCCGATCCCTCCTGCGTGCTGTCGAT
* * * * * *
33979199 CCTACTGTCGCAACCCTCGATCCAGTCTGATCTTAGTCTGGGAATGAACTCTATATGCTTAGACT
261 CCCACTGTCACAACCCTCGATCCAGACTGAGCTTAGACTGGGAATGAACTCCATATGCTTAGACT
33979264 GGGGATGAGCTCTATAC
326 GGGGATGAGCTCTATAC
* * * * *
33979281 GCCTAAGTCAACCCATA-AAATGAG-CATGCGGGCGCTTAGTCGACCGGAGAGGTAGAATGCACA
1 GCCTAAGCCAACCC-TAGAAATG-GCCATGCGGGCGCTGAGCCGACCGAAGAGGCAGAATGCACA
* * **
33979344 AGTCGAGGATC-GACCCGGTCCCCC-TGCGTGCTGTCGATCCTACTACCGTAACCCTT-GGTCTG
64 AGTCGAGGATCAG-CCCGGGCCCCCTTACGTGCTGTCGATCCTACTACCACAA-CCTTCGGTCTG
* * * * *
33979406 ATCCGATCTTAGATAGGGAATGAACT-TCGTATGCATAAGTCAACCCACGAAATGAGTGTGCGGG
127 ATCCGAGCTTAGACAGGGAATGAACTCT-GTATGCATAAGCCAACCCACGAAACGAGCGTGCGGG
* * * * *
33979470 CACTGAGCCGGTCGAAGAGGCATAATGCGCAAGCCGGGGATTGGA-CCGATCCCCTTCTGCGTGC
191 CACTCAACCGGTCGAAGAGGCATAATGCGCAAGCCGAGGA-TCGACCCGAT-CCCTCCTGCGTGC
* * * * * * *
33979534 TGTTGGTCCCACTG-CTACAACCCTTGGTTC-GACTGGGGCTTAGACAT-GGAATGAACTCCCTA
254 TGTCGATCCCACTGTC-ACAACCCTCGATCCAGACT-GAGCTTAGAC-TGGGAATGAACTCCATA
33979596 TGCTTA
316 TGCTTA
33979602 AGCCAACCCA
Statistics
Matches: 263, Mismatches: 48, Indels: 20
0.79 0.15 0.06
Matches are distributed among these distances:
340 1 0.00
341 121 0.46
342 137 0.52
343 4 0.02
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (342 bp):
GCCTAAGCCAACCCTAGAAATGGCCATGCGGGCGCTGAGCCGACCGAAGAGGCAGAATGCACAAG
TCGAGGATCAGCCCGGGCCCCCTTACGTGCTGTCGATCCTACTACCACAACCTTCGGTCTGATCC
GAGCTTAGACAGGGAATGAACTCTGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCACTC
AACCGGTCGAAGAGGCATAATGCGCAAGCCGAGGATCGACCCGATCCCTCCTGCGTGCTGTCGAT
CCCACTGTCACAACCCTCGATCCAGACTGAGCTTAGACTGGGAATGAACTCCATATGCTTAGACT
GGGGATGAGCTCTATAC
Found at i:33980683 original size:26 final size:26
Alignment explanation
Indices: 33980647--33980699 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
33980637 CCGGTCTGAT
33980647 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
33980673 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
33980699 C
1 C
33980700 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:33981109 original size:343 final size:343
Alignment explanation
Indices: 33980330--33981116 Score: 1049
Period size: 343 Copynumber: 2.3 Consensus size: 343
33980320 CCGGTCTAAT
* * * * * *
33980330 CTTAGATTGGGAATGAACTCTGTATGCATAAGTCAACCCATGAAACGAGCGTACGGGTGCTGAGT
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTGAGC
* *
33980395 CGATCGAAGAGGCATAATACGTAAGTCGAGGATCGACCCGATCCCCCTCTACGTGCTGTCGGTCC
66 CGATCGAAGAGGCATAATGCGTAAGCCGAGGATCGACCCGATCCCCCTCTACGTGCTGTCGGTCC
* * *
33980460 CGCTGCCACAACCCTCGGTCCGACGGGGGCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAA
131 CGCTGCCAAAACCCTCGGTCCGACGGGGGCTTAGACATGGAACGAACTCCCTATGCCTAAGCCAA
* * * ** * * *
33980525 CCCATGAAACGAGTGTGCGGGCGCTCAGCCAGTTGGAGAGGCAGAATGCGCAAGTCGGGGATTGA
196 CCCACGAAACGAGCGTGAGGGCGCTCAGCCAGCCGGAGAGGCAGAATGCACAAGTCGAGGACTGA
* * * **
33980590 TTCGATCCCCCTTACATGCTACCGATCCTACTGCCGCATCCCTCAGTCCGGTCTGATCTTAGACT
261 TCCGATCCCCCCTACATGCTACCGATCCTACTGCCGCAACCCTCAGTCCGGTCTGATCTTAGAAA
* *
33980655 GGGAATGAACTCCATATG
326 GGAAATGAACTCCATATA
* * *
33980673 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCGTGAAATGAGCGTGCGGGTGCAGAGC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTGAGC
* * * *
33980738 CGATCGAAGAGGCATAATGTGCAAGCCGAGGATCGGCCCGATCCCCCTCTACGTGTTGTCGGTCC
66 CGATCGAAGAGGCATAATGCGTAAGCCGAGGATCGACCCGATCCCCCTCTACGTGCTGTCGGTCC
* ***
33980803 TGCTGCCAAAACCCTCGGTCCGGTTGGGGCTTAGACATGGAACGAACTCCCTATGCCTAAGCCAA
131 CGCTGCCAAAACCCTCGGTCCGACGGGGGCTTAGACATGGAACGAACTCCCTATGCCTAAGCCAA
* **
33980868 CCCACGAAACTG-GCGTGAGGGCGTTCAGCTGGCCGGAGAGGCAGAATGCACAAGTCGAGGACTG
196 CCCACGAAAC-GAGCGTGAGGGCGCTCAGCCAGCCGGAGAGGCAGAATGCACAAGTCGAGGACTG
* * * * *
33980932 GTCCGATCCCCCCTACCTGCTATCGATTCTACTGTCGCAACCCTC-GATCCGGTCTGATCTTAGA
260 ATCCGATCCCCCCTACATGCTACCGATCCTACTGCCGCAACCCTCAG-TCCGGTCTGATCTTAGA
33980996 AAGGAAATGAACTCCATATA
324 AAGGAAATGAACTCCATATA
* * *
33981016 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGCGCTCAGC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTGAGC
* ** * *
33981081 CGACTAGAA-AGGCAGGATGCATAAGCCGAGGGTCGA
66 CGA-TCGAAGAGGCATAATGCGTAAGCCGAGGATCGA
33981117 ACGGGTGGTA
Statistics
Matches: 382, Mismatches: 59, Indels: 6
0.85 0.13 0.01
Matches are distributed among these distances:
342 1 0.00
343 376 0.98
344 5 0.01
ACGTcount: A:0.25, C:0.28, G:0.28, T:0.20
Consensus pattern (343 bp):
CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTGAGC
CGATCGAAGAGGCATAATGCGTAAGCCGAGGATCGACCCGATCCCCCTCTACGTGCTGTCGGTCC
CGCTGCCAAAACCCTCGGTCCGACGGGGGCTTAGACATGGAACGAACTCCCTATGCCTAAGCCAA
CCCACGAAACGAGCGTGAGGGCGCTCAGCCAGCCGGAGAGGCAGAATGCACAAGTCGAGGACTGA
TCCGATCCCCCCTACATGCTACCGATCCTACTGCCGCAACCCTCAGTCCGGTCTGATCTTAGAAA
GGAAATGAACTCCATATA
Found at i:33981761 original size:26 final size:26
Alignment explanation
Indices: 33981723--33981772 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
33981713 GGCTCAAAAT
33981723 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
33981749 CTTAGACAT-GGAATGAACTCCGTA
1 CTTAGAC-TGGGAATGAACTCCGTA
33981773 GGCCTAAGCC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:33982945 original size:159 final size:158
Alignment explanation
Indices: 33982614--33982968 Score: 401
Period size: 158 Copynumber: 2.2 Consensus size: 158
33982604 AATTCTGTAT
* * * *
33982614 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCAGAAAACGAGCGTGCGGGCACTCAA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACACACAAAACGAGCATGCAGGCACTCAA
* * * * * *
33982679 CCGATCGGAGAGGCAGAATGTGCAAGCCAGGGATCGGCTCGGTCCCCCCCGTGTGGTGTCGATCC
66 CCGATCGAAAAAGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCCCGTGTGCTGTCGATCC
33982744 TGCTACCACAACCCTCGATCCGGTCTGA
131 TGCTACCACAACCCTCGATCCGGTCTGA
* * * * * * ** *
33982772 TCTTAGAC-TAGGAATGAACTTCGTATGCGTAAGTCAACACACAAAATGAGCATGCAGGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACACACAAAACGAGCATGCAGGCACTCA
* * * * *
33982836 GCCGGTCGAAAAAGCATAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCTCTGTGTGCTGTCGGT
65 ACCGATCGAAAAAGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCC-CCGTGTGCTGTCGAT
* *
33982901 -CTCGCTGCCACAACCCTCGATCCGGT-TGGG
129 CCT-GCTACCACAACCCTCGATCCGGTCT-GA
* *
33982931 GCTTAGACATGGAATGAACTCCCTATCCCTAAGCCAAC
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAAC
33982969 CCACGAAGAG
Statistics
Matches: 160, Mismatches: 32, Indels: 9
0.80 0.16 0.04
Matches are distributed among these distances:
157 1 0.01
158 93 0.58
159 65 0.41
160 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACACACAAAACGAGCATGCAGGCACTCAA
CCGATCGAAAAAGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCCCGTGTGCTGTCGATCC
TGCTACCACAACCCTCGATCCGGTCTGA
Found at i:33985942 original size:26 final size:26
Alignment explanation
Indices: 33985913--33985965 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
33985903 CCGATCTGAT
*
33985913 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
33985939 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
33985965 C
1 C
33985966 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Done.