Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 373 of 402
Found at i:33987348 original size:26 final size:26
Alignment explanation
Indices: 33987319--33987371 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
33987309 CCGATTCAAT
33987319 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
33987345 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCCGTATG
33987371 C
1 C
33987372 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:33987350 original size:184 final size:191
Alignment explanation
Indices: 33987160--33987611 Score: 517
Period size: 197 Copynumber: 2.4 Consensus size: 191
33987150 TCTGACTGGG
* * *
33987160 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCAGATGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGTGCTCAG
* *
33987225 TCGGTCGGAGAGGCAGAATGCACAAGCCGA-GGATCGACCCGGT-CCCCCTTGCGTGCTACCGAT
66 TCGGTCGGAGAGGCAGAATGCACAAGCC-ATGGATCGACCCGATCCCCCCTTGCGAGCTACCGAT
* * *
33987288 -C-CTA-C-TG-T-CGCAACCTTCGGTCCGATTCAATCTTAGACTGGGAATGAACTCCGTAT
130 CCACTAGCTTGCTACGCAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCATAT
* * *
33987344 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGCG-AGTGTGGGTGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCA-TGCGGGTGCTCA
* ** * ** * * **
33987408 GCCGACCGGAGAGGTAGAATGCGTAAGCCATGGATCGGCCCGATCCCCCCTTGTGAGCTGTCGAT
65 GTCGGTCGGAGAGGCAGAATGCACAAGCCATGGATCGACCCGATCCCCCCTTGCGAGCTACCGAT
* *
33987473 CCTACTACTGGTCTTGCTACCGCAACCCTCGGTCCGGTCCTATCTTAGACTGGGAATGAACTCCA
130 CC-ACTA---G-CTTGCTA-CGCAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCA
33987538 TAT
189 TAT
* * * * *
33987541 GCTTAGACATGGAATGAACTTCGTTTGCCTAAGCCAACCCATGAAACAAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGTGCTCAG
33987606 TCGGTC
66 TCGGTC
33987612 CCCTCTGCGT
Statistics
Matches: 218, Mismatches: 34, Indels: 19
0.80 0.13 0.07
Matches are distributed among these distances:
183 2 0.01
184 90 0.41
185 16 0.07
186 1 0.00
188 3 0.01
193 1 0.00
194 2 0.01
195 1 0.00
197 102 0.47
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (191 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGTGCTCAG
TCGGTCGGAGAGGCAGAATGCACAAGCCATGGATCGACCCGATCCCCCCTTGCGAGCTACCGATC
CACTAGCTTGCTACGCAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCATAT
Found at i:33988721 original size:25 final size:26
Alignment explanation
Indices: 33988685--33988734 Score: 77
Period size: 25 Copynumber: 2.0 Consensus size: 26
33988675 CTCAAAATCC
33988685 TAGACTGAGAATGAACT-CGTATGCT
1 TAGACTGAGAATGAACTCCGTATGCT
33988710 TAGACATG-GAATGAACTCCGTATGC
1 TAGAC-TGAGAATGAACTCCGTATGC
33988735 CTATGCCAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
25 14 0.61
26 9 0.39
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.26
Consensus pattern (26 bp):
TAGACTGAGAATGAACTCCGTATGCT
Found at i:33989135 original size:159 final size:158
Alignment explanation
Indices: 33988707--33989157 Score: 412
Period size: 159 Copynumber: 2.8 Consensus size: 158
33988697 GAACTCGTAT
* * *
33988707 GCTTAGACATGGAATGAACTCCGTATGCCTATGCCAACCCACGAAACGAAGCGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCC-TATGCCTAAGCCAACCCATGAAAC-AGGCGTGCGGGCGCTCA
* * * * * *
33988772 GCCGGCTGGAGAGTAGAATGCGCAACT-GAGGATCGACCTGATCCCCC-CTGTATGTTGTCGATC
64 GCCGGCCGGAGAGCAGAATGCGCAAGTCGAGGATCGGCCTGATCCCCCTCTGTGTGCTGTCGATC
*** * *
33988835 CTGCTATTGCAACCCTCAGTCTGATCTGAA
129 CTGCTACCACAACCCTCAGTCTCAGCTGAA
* * * * * * * *
33988865 TCTTATAC-TGGGAATGAACTTCATATGCATAAGTCAACCCATGAAAC-GAGCGTACGGGCACTG
1 GCTTAGACAT-GGAATGAAC-TCCTATGCCTAAGCCAACCCATGAAACAG-GCGTGCGGGCGCTC
* * * * * * *
33988928 AGCCAGTCGAAGACGCATAATGCGCAAGTCAAGGATCAGCCCGATCCCCCTCTGTGTGCTGTCGA
63 AGCCGGCCGGAGA-GCAGAATGCGCAAGTCGAGGATCGGCCTGATCCCCCTCTGTGTGCTGTCGA
* * **
33988993 TCCTGTTGCCACAACCCTCAGTC-CAGCTGGG
127 TCCTGCTACCACAACCCTCAGTCTCAGCTGAA
33989024 GCTTAGACATGGAATGAACTGCCTATGCCTAAGCCAACCCATGAAACAGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACT-CCTATGCCTAAGCCAACCCATGAAACAGGCGTGCGGGCGCTCAG
* ** * * * *
33989089 TCGGCCGGAGAGGCAGAATGCATAAGTCGGGGATCGGCCT-AGT-CCCCTCTGCGTACTATCGAT
65 CCGGCCGGAGA-GCAGAATGCGCAAGTCGAGGATCGGCCTGA-TCCCCCTCTGTGTGCTGTCGAT
33989152 CCTGCT
128 CCTGCT
33989158 GTCGCCACCC
Statistics
Matches: 226, Mismatches: 57, Indels: 20
0.75 0.19 0.07
Matches are distributed among these distances:
157 21 0.09
158 71 0.31
159 102 0.45
160 32 0.14
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCTATGCCTAAGCCAACCCATGAAACAGGCGTGCGGGCGCTCAGC
CGGCCGGAGAGCAGAATGCGCAAGTCGAGGATCGGCCTGATCCCCCTCTGTGTGCTGTCGATCCT
GCTACCACAACCCTCAGTCTCAGCTGAA
Found at i:33989209 original size:158 final size:157
Alignment explanation
Indices: 33988708--33989209 Score: 451
Period size: 158 Copynumber: 3.2 Consensus size: 157
33988698 AACTCGTATG
* * *
33988708 CTTAGACATGGAATGAACTCCGTATGCCTATGCCAACCCACGAAACGAAGCGTGCGGGCGCTCAG
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAC-AGGCGTGCGGGCGCTCAG
* * * * * * *
33988773 CCGGCTGGAGAGTAGAATGCGCAACT-GAGGATCGACCTGATCCCCCCTGTATGTTGTCGATCCT
65 CCGGCCGGAGAGCAGAATGCGCAAGTCGAGGATCGGCCTGATCCCCTCTGTGTGCTGTCGATCCT
* * *
33988837 GCTATTGCAACCCTCAGTCTGATCTGAAT
130 GCTGTCGCAACCCTCAGTCTGATCAG-AT
* * * * * * * *
33988866 CTTATAC-TGGGAATGAACTTCATATGCATAAGTCAACCCATGAAAC-GAGCGTACGGGCACTGA
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAG-GCGTGCGGGCGCTCA
* * * * * * *
33988929 GCCAGTCGAAGACGCATAATGCGCAAGTCAAGGATCAGCCCGATCCCCCTCTGTGTGCTGTCGAT
64 GCCGGCCGGAGA-GCAGAATGCGCAAGTCGAGGATCGGCCTGAT-CCCCTCTGTGTGCTGTCGAT
* * * * * * **
33988994 CCTGTTGCCACAACCCTCAGTC-CAGCTGGGG
127 CCTGCTGTCGCAACCCTCAGTCTGATC-AGAT
33989025 CTTAGACATGGAATGAACTGCC-TATGCCTAAGCCAACCCATGAAACAGGCGTGCGGGCGCTCAG
1 CTTAGACATGGAATGAACT-CCGTATGCCTAAGCCAACCCATGAAACAGGCGTGCGGGCGCTCAG
* ** * * * *
33989089 TCGGCCGGAGAGGCAGAATGCATAAGTCGGGGATCGGCCT-AGTCCCCTCTGCGTACTATCGATC
65 CCGGCCGGAGA-GCAGAATGCGCAAGTCGAGGATCGGCCTGA-TCCCCTCTGTGTGCTGTCGATC
* *
33989153 CTGCTGTCGCCACCCTCGGTCTGATCAGAT
128 CTGCTGTCGCAACCCTCAGTCTGATCAGAT
33989183 CTTAGAC-TGGGAATGAACTCCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
33989210 TTAGATTGGG
Statistics
Matches: 264, Mismatches: 67, Indels: 26
0.74 0.19 0.07
Matches are distributed among these distances:
157 24 0.09
158 107 0.41
159 95 0.36
160 38 0.14
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAGGCGTGCGGGCGCTCAGC
CGGCCGGAGAGCAGAATGCGCAAGTCGAGGATCGGCCTGATCCCCTCTGTGTGCTGTCGATCCTG
CTGTCGCAACCCTCAGTCTGATCAGAT
Found at i:33989234 original size:26 final size:26
Alignment explanation
Indices: 33989183--33989235 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
33989173 CTGATCAGAT
*
33989183 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
* * *
33989209 CTTAGATTGGGGATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
33989235 C
1 C
33989236 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:33989661 original size:159 final size:158
Alignment explanation
Indices: 33989389--33989699 Score: 363
Period size: 159 Copynumber: 2.0 Consensus size: 158
33989379 GGTCTGACTG
* * * * * * *
33989389 GGGCTTAGACATGGAATGAACTCCGTATGCCTGAGCCAAACCATGAAACGAGTGTGCGGGTGCTG
1 GGGCTTAGACATGAAATGAACTCCCTATGCCTAAGCCAAACCACGAAACGAGCGTGCGGGCGCTC
* * * * * * *
33989454 AGCCGGCCGGAGAGGCATAATGCACAAGTCGGGCATCGGCCCGATCCCCCTCTGCGTGCTATCGA
66 AACCGGCCAGACAGGCAGAATGCACAAGCCGGGCATCGGCCCGATCCCCC-CTGCGTGCCACCGA
*
33989519 TCCCGCTACCACAACCCTCGGTCCAGCTA
130 TCCCACTACCACAACCCTCGGTCCAGCTA
* * *
33989548 GGGCTTAGACATGAAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTC
1 GGGCTTAGACATGAAATGAACTCCCTATGCCTAAGCCAAACCACGAAACGAGCGTGCGGGCGCTC
* * * * * *
33989613 AATCGGCCAGACAGGTAGAATGCGCAAGCCGAGG-ATCGGCTCGGTCCCCCCTGCGTGCCGCCGA
66 AACCGGCCAGACAGGCAGAATGCACAAGCCG-GGCATCGGCCCGATCCCCCCTGCGTGCCACCGA
* *
33989677 TCCTACTGCCACAACCCTCGGTC
130 TCCCACTACCACAACCCTCGGTC
33989700 TGGTCCGATC
Statistics
Matches: 125, Mismatches: 26, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
158 31 0.25
159 92 0.74
160 2 0.02
ACGTcount: A:0.23, C:0.33, G:0.28, T:0.17
Consensus pattern (158 bp):
GGGCTTAGACATGAAATGAACTCCCTATGCCTAAGCCAAACCACGAAACGAGCGTGCGGGCGCTC
AACCGGCCAGACAGGCAGAATGCACAAGCCGGGCATCGGCCCGATCCCCCCTGCGTGCCACCGAT
CCCACTACCACAACCCTCGGTCCAGCTA
Found at i:33991217 original size:25 final size:25
Alignment explanation
Indices: 33991189--33991239 Score: 77
Period size: 25 Copynumber: 2.0 Consensus size: 25
33991179 CCGATTTGAT
*
33991189 CTTAGATTGGGAATG-ACTCCGTATG
1 CTTAGACTGGG-ATGAACTCCGTATG
33991214 CTTAGACTGGGATGAACTCCGTATG
1 CTTAGACTGGGATGAACTCCGTATG
33991239 C
1 C
33991240 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
24 3 0.12
25 21 0.88
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (25 bp):
CTTAGACTGGGATGAACTCCGTATG
Found at i:33993622 original size:13 final size:13
Alignment explanation
Indices: 33993604--33993635 Score: 64
Period size: 13 Copynumber: 2.5 Consensus size: 13
33993594 TGGACGCACG
33993604 GTGCCAATGCCTA
1 GTGCCAATGCCTA
33993617 GTGCCAATGCCTA
1 GTGCCAATGCCTA
33993630 GTGCCA
1 GTGCCA
33993636 TTGAGGAGTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.22, C:0.31, G:0.25, T:0.22
Consensus pattern (13 bp):
GTGCCAATGCCTA
Found at i:33997847 original size:26 final size:26
Alignment explanation
Indices: 33997808--33997859 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
33997798 TGGCTCAAAA
33997808 TCTTAGACTGGGAATGAACTCCGTAT
1 TCTTAGACTGGGAATGAACTCCGTAT
33997834 TCTTAGAC-GTGGAATGAACTCCGTAT
1 TCTTAGACTG-GGAATGAACTCCGTAT
33997860 GCCTAAGCCA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.31
Consensus pattern (26 bp):
TCTTAGACTGGGAATGAACTCCGTAT
Found at i:33998337 original size:158 final size:158
Alignment explanation
Indices: 33997835--33998396 Score: 632
Period size: 159 Copynumber: 3.5 Consensus size: 158
33997825 ACTCCGTATT
* *
33997835 CTTAGACGTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCG-G
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCT-GAG
* * *
33997899 CCGATCGGAGAGGCAGAATGCGCAAGTCGGGGATCGACTCGGGCCCCCTCTATGTGCTGTTGATC
65 CCGGTCGGAGAGGCAGAATGCGCAAGTCGGGGATCG-CTCGGGCCCCCTCTACGTGCTGTCGATC
* *****
33997964 CTGTTGCCACAACCCTCGGTCTGATCAATT
129 TTGTTGCCACAACCCTCGGTCTGATTGGGG
* * * *
33997994 CTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGTGGGCACTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTGAG
* * * * * ** * *
33998058 CCGGTCGAAGAGGCATAATACGCAAGCCGGGGATTGGC-CTGATCCCCCTCTGCGTGCTGTCGGT
65 CCGGTCGGAGAGGCAGAATGCGCAAGTCGGGGA-TCGCTC-GGGCCCCCTCTACGTGCTGTCGAT
* * * *
33998122 CTCGCTGCCACAACCTTCGGTCTGACTGGGG
128 CTTGTTGCCACAACCCTCGGTCTGATTGGGG
* * * * *
33998153 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCTCGAAATG-GCCATGCAGGCGCTGAG
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAG-CGTGCGGGCGCTGAG
* * * *
33998217 TCGGTCGGAGAGGCAGAATGCACAAGTCGGGGATCAGCTCGGGCCCCCT-TACGTGCTGCCAATC
65 CCGGTCGGAGAGGCAGAATGCGCAAGTCGGGGATC-GCTCGGGCCCCCTCTACGTGCTGTCGATC
*
33998281 TTGTTGCCACAACCCTCGGTCCGATTGGGG
129 TTGTTGCCACAACCCTCGGTCTGATTGGGG
* * *
33998311 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTGAGC
*
33998376 CGGCCGGAGAGGC-GTAATGCG
66 CGGTCGGAGAGGCAG-AATGCG
33998397 TAAGCCGAGG
Statistics
Matches: 330, Mismatches: 63, Indels: 21
0.80 0.15 0.05
Matches are distributed among these distances:
157 1 0.00
158 114 0.35
159 211 0.64
160 4 0.01
ACGTcount: A:0.23, C:0.29, G:0.29, T:0.19
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTGAGC
CGGTCGGAGAGGCAGAATGCGCAAGTCGGGGATCGCTCGGGCCCCCTCTACGTGCTGTCGATCTT
GTTGCCACAACCCTCGGTCTGATTGGGG
Found at i:33998505 original size:26 final size:26
Alignment explanation
Indices: 33998469--33998521 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
33998459 CCAGTCCGAT
*
33998469 CTTAGTCTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCTATATG
* *
33998495 CTTAGACTGGGGATGAGCTCTATATG
1 CTTAGACTGGGAATGAACTCTATATG
33998521 C
1 C
33998522 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTATATG
Found at i:33999927 original size:26 final size:26
Alignment explanation
Indices: 33999888--33999938 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
33999878 GATCTGATCA
33999888 TAGACTGGGAATGAACTCCATATGCT
1 TAGACTGGGAATGAACTCCATATGCT
*
33999914 TAGACTGAGG-ATGAACTCCGTATGC
1 TAGACTG-GGAATGAACTCCATATGC
33999939 CAAAGTCAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.25
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCATATGCT
Found at i:34000258 original size:26 final size:26
Alignment explanation
Indices: 34000229--34000281 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
34000219 CCGGTCCAAT
34000229 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* * *
34000255 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
34000281 C
1 C
34000282 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:34001004 original size:26 final size:26
Alignment explanation
Indices: 34000953--34001005 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
34000943 GGCTCAAAAT
*
34000953 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCATATG
34000979 CTTAGACAT-GGAATGAA-TTCCATATG
1 CTTAGAC-TGGGAATGAACTT-CATATG
34001005 C
1 C
34001006 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 2 0.08
26 21 0.88
27 1 0.04
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCATATG
Found at i:34001375 original size:159 final size:158
Alignment explanation
Indices: 34000978--34001380 Score: 371
Period size: 159 Copynumber: 2.5 Consensus size: 158
34000968 AACTTCGTAT
* * *
34000978 GCTTAGACATGGAATGAATTCCATATGCCTAAGCCAACCCATGGAACGAGCATGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCGCTAAG
* * * * ** * * *
34001043 CCAGCCGGAGAGGCAGAATGCGCAAGCTAGGGATCGGCCCGGTCCCCCCCTATGAGTTGTCGATC
66 CCAGCC-GAAAGGCAAAATGCGCAAGCCAGGGATCGACCCAATCCCCCCCTACGAGCTATCGATC
* *
34001108 CTGCTGCCACAACCCTCAGTCCGGTTCAA
130 CTGCTGCCACAACCCTCAGTCCAGCTCAA
* * * * * *
34001137 TCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCATGGGGGTGCTAA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCGCTAA
* * * * * * ** * * *
34001201 GTCAACTGAAGAGGCATAATGCGCAATCCGGGGATCGACCCAATCCCCTTCTGCGTGCTATCGGT
65 GCCAGCCGAA-AGGCAAAATGCGCAAGCCAGGGATCGACCCAATCCCCCCCTACGAGCTATC-GA
* * ***
34001266 TCC-GCTGCCACAACCCTCGGTTCAGCTGGG
128 TCCTGCTGCCACAACCCTCAGTCCAGCTCAA
* * *
34001296 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAC-AGGCATGCAGGCGCTGA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGA-GCATGCGGGCGCTAA
*
34001360 GCCGGCCGTAAAGGCAAAATG
65 GCCAGCCG-AAAGGCAAAATG
34001381 AGTAAGCCGA
Statistics
Matches: 190, Mismatches: 48, Indels: 12
0.76 0.19 0.05
Matches are distributed among these distances:
158 4 0.02
159 179 0.94
160 7 0.04
ACGTcount: A:0.26, C:0.29, G:0.27, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCGCTAAG
CCAGCCGAAAGGCAAAATGCGCAAGCCAGGGATCGACCCAATCCCCCCCTACGAGCTATCGATCC
TGCTGCCACAACCCTCAGTCCAGCTCAA
Found at i:34003418 original size:26 final size:26
Alignment explanation
Indices: 34003382--34003434 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
34003372 CTAGTCTGAT
34003382 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
34003408 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
34003434 C
1 C
34003435 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:34004299 original size:26 final size:26
Alignment explanation
Indices: 34004263--34004315 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
34004253 CCAGTCCGAT
*
34004263 CTTAGACTGGGAATAAACTCTGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
* *
34004289 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
34004315 C
1 C
34004316 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:34004838 original size:26 final size:26
Alignment explanation
Indices: 34004809--34004858 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
34004799 ATCCAATCTA
*
34004809 AGATTGTGAATGAACTCCATATGCTT
1 AGATTGGGAATGAACTCCATATGCTT
* *
34004835 AGATTGGGGATGAACTCCGTATGC
1 AGATTGGGAATGAACTCCATATGC
34004859 CTAAGACAAC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (26 bp):
AGATTGGGAATGAACTCCATATGCTT
Found at i:34005922 original size:26 final size:26
Alignment explanation
Indices: 34005870--34005922 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
34005860 CTGGTCTGAT
*
34005870 CTTAGACTGGGAATGAACTCTGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
* * *
34005896 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
34005922 C
1 C
34005923 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:34006785 original size:102 final size:102
Alignment explanation
Indices: 34006609--34006794 Score: 273
Period size: 102 Copynumber: 1.8 Consensus size: 102
34006599 AACTCCGTAT
* * * *
34006609 GCTTAGACATGAAATGAACTCCGTATGCCAAAGCCAACCAACGAAATGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGAAATAAACTCCGTATGCCAAAGCCAACCAACGAAATGAGCGTGCAGCTACTCAG
* *
34006674 TCGGTCGGAGAGGCAGAATGCGCAACTCGGGGCTGGG
66 CCGATCGGAGAGGCAGAATGCGCAACTCGGGGCTGGG
* * * * *
34006711 GCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACGAAATGAGTGTGCAGCTACTTAG
1 GCTTAGACATGAAATAAACTCCGTATGCCAAAGCCAACCAACGAAATGAGCGTGCAGCTACTCAG
34006776 CCGATCGGAGAGGCAGAAT
66 CCGATCGGAGAGGCAGAAT
34006795 TTACAAGCCG
Statistics
Matches: 73, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
102 73 1.00
ACGTcount: A:0.30, C:0.24, G:0.30, T:0.17
Consensus pattern (102 bp):
GCTTAGACATGAAATAAACTCCGTATGCCAAAGCCAACCAACGAAATGAGCGTGCAGCTACTCAG
CCGATCGGAGAGGCAGAATGCGCAACTCGGGGCTGGG
Found at i:34006922 original size:26 final size:25
Alignment explanation
Indices: 34006883--34006934 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
34006873 CCGGTACGAT
34006883 CTTAGACTGGAATGAACTCCATATG
1 CTTAGACTGGAATGAACTCCATATG
*
34006908 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGAC-TGGAATGAACTCCATATG
34006934 C
1 C
34006935 CTAAGCTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTCCATATG
Found at i:34008775 original size:159 final size:158
Alignment explanation
Indices: 34008406--34008775 Score: 381
Period size: 158 Copynumber: 2.3 Consensus size: 158
34008396 AACTTCGTGT
* * *
34008406 GCTTAGACATGGAATGAACTCCGTATGCTTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTTAG
1 GCTTAGACATGGAATGAACTCCGTATGCTTAAGCCAAACCACGAAACGAGCGTGCGGGTGCTGAG
** *
34008471 CCGGTCGGAGAGGCAGAATCCACAAGCCAGGGACCAACCCGATCCCCCCTGCATGCTATCGATCC
66 CCGACCGAAGAGGCAGAATCCACAAGCCAGGGACCAACCCGATCCCCCCTGCATGCTATCGATCC
* *
34008536 TGCTACCGCAACCCTCGGTCTGGTCTGA
131 TGCTACCACAACCCTCGGTCTAGTCTGA
* * * *
34008564 TCTTAGAC-TGGGAATGAACTCTGTATGCTTAAGTCAATCCACGAAACGAGCGTGCGGG-GACTG
1 GCTTAGACAT-GGAATGAACTCCGTATGCTTAAGCCAAACCACGAAACGAGCGTGCGGGTG-CTG
* * * * ** * * *
34008627 AGCCGACCGAAGAGGCATAATGCACAAGTCGGGGATCGGA-TCGGTCCCCCTCTGCTTGCTATCG
64 AGCCGACCGAAGAGGCAGAATCCACAAGCCAGGGA-CCAACCCGATCCCCC-CTGCATGCTATCG
* * * * *
34008691 GT-CTCGTTGCCATAACCCTCGGTCTAG-CTGGG
127 ATCCT-GCTACCACAACCCTCGGTCTAGTCT-GA
* * * *
34008723 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAACCACAAAACAAGCGT
1 GCTTAGACATGGAATGAACTCCGTATGCTTAAGCCAAACCACGAAACGAGCGT
34008776 ACAGGCACTA
Statistics
Matches: 172, Mismatches: 33, Indels: 13
0.79 0.15 0.06
Matches are distributed among these distances:
157 2 0.01
158 93 0.54
159 76 0.44
160 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCTTAAGCCAAACCACGAAACGAGCGTGCGGGTGCTGAG
CCGACCGAAGAGGCAGAATCCACAAGCCAGGGACCAACCCGATCCCCCCTGCATGCTATCGATCC
TGCTACCACAACCCTCGGTCTAGTCTGA
Found at i:34008914 original size:26 final size:26
Alignment explanation
Indices: 34008885--34008934 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
34008875 GTCCGATCTT
*
34008885 AGACTGGGAATGAACTCCGTATGCTC
1 AGACTGGGAATAAACTCCGTATGCTC
*
34008911 AGACTGGGGATAAACTCCGTATGC
1 AGACTGGGAATAAACTCCGTATGC
34008935 CTAGGTCAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.22, G:0.28, T:0.22
Consensus pattern (26 bp):
AGACTGGGAATAAACTCCGTATGCTC
Found at i:34010214 original size:26 final size:26
Alignment explanation
Indices: 34010178--34010229 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
34010168 CTAGTTCGAT
*
34010178 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
34010204 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
34010230 TATAAGTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:34010646 original size:26 final size:26
Alignment explanation
Indices: 34010610--34010662 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
34010600 CCGATCCGAT
*
34010610 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
* *
34010636 CTTAGACTGGGGATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
34010662 C
1 C
34010663 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.13, G:0.28, T:0.34
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:34011030 original size:159 final size:158
Alignment explanation
Indices: 34010691--34011052 Score: 359
Period size: 159 Copynumber: 2.3 Consensus size: 158
34010681 CGAGCATGCG
* * ** * * * *
34010691 GGCACTGAGCCGATCGGAGAGGCATAATGCGCAAGCCGAAGATCGATTCGGTCCCCCTCTGCATG
1 GGCACT-AGCCGGTCGGAGAGGCATAATGCGCAAACCGGGGATAGATCCGATCCCCCTCTACATG
* * * ** *
34010756 CTGTCGGTACCATTGCAACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCTTATG
65 CTGCCGGTACCACTACAACAACCCTCGATCCGACTGAAGCTTAGACATGGAATGAACTCCCTATG
*
34010821 CCTAAGCCAACAGACAAAACGGGCGTGCG
130 CCTAAGCCAACAGACAAAACGGGCGTGCA
* * * * * *
34010850 GGTACTAACCTGACAGAAGAGGCATAATGCGCAAACCGGGGATAGGTCCGATCCCCCTCTACATG
1 GGCACTAGCCGGTC-GGAGAGGCATAATGCGCAAACCGGGGATAGATCCGATCCCCCTCTACATG
* * * * *
34010915 CTGCCGGTCCCACTACCACAACCCTTGGTCTGAC-GCAAGCTTAGACATGGAATGAACTCCCTAT
65 CTGCCGGTACCACTACAACAACCCTCGATCCGACTG-AAGCTTAGACATGGAATGAACTCCCTAT
* * *
34010979 GCCTAAGCCTACCA-ACGAAACGGGTGTGCA
129 GCCTAAGCC-AACAGACAAAACGGGCGTGCA
* * * *
34011009 GGCGCTCAGCCGGTCGGAGAGGCAAAATGTGCAAAGTCGGGGAT
1 GGCACT-AGCCGGTCGGAGAGGCATAATGCGCAAA-CCGGGGAT
34011053 CGGCCCAGTC
Statistics
Matches: 160, Mismatches: 38, Indels: 9
0.77 0.18 0.04
Matches are distributed among these distances:
158 5 0.03
159 140 0.88
160 15 0.09
ACGTcount: A:0.27, C:0.29, G:0.27, T:0.18
Consensus pattern (158 bp):
GGCACTAGCCGGTCGGAGAGGCATAATGCGCAAACCGGGGATAGATCCGATCCCCCTCTACATGC
TGCCGGTACCACTACAACAACCCTCGATCCGACTGAAGCTTAGACATGGAATGAACTCCCTATGC
CTAAGCCAACAGACAAAACGGGCGTGCA
Found at i:34011149 original size:26 final size:26
Alignment explanation
Indices: 34011113--34011165 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34011103 CCGATTCGAT
34011113 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTTCATATG
* *
34011139 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCATATG
34011165 C
1 C
34011166 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCATATG
Found at i:34011485 original size:26 final size:26
Alignment explanation
Indices: 34011456--34011508 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
34011446 CCGATTCGAT
34011456 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
*
34011482 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
34011508 C
1 C
34011509 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:34011522 original size:343 final size:340
Alignment explanation
Indices: 34010865--34011924 Score: 1183
Period size: 343 Copynumber: 3.1 Consensus size: 340
34010855 TAACCTGACA
* * * * * * * *
34010865 GAAGAGGCATAATGCGCAAACCGGGGATAGGTCC-GATCCCCCTCTACATGCTGCCGGTCCCACT
1 GAAGAGGCATAATGCGCAAGCCGAGGAT-CGACCTGATCCCCCTCTGCGTGCTGCCAGTCCCGCT
* * ** *
34010929 ACCACAACCCTTGGTCTGAC-GCAAGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCTACCA
65 GCCACAACCCTCGGTCTGACTG-GGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCTACCC
* * * **
34010993 ACGAAACGGGTGTGCAGGCGC-TCAGCCGGTCGGAGAGGCAAAATGTGCAAAG-TCGGGGATCGG
129 ACGAAATGGGCGTGC-GG-GCTTCAACCGGTCAAAGAGG-AAAATGTGC-AAGCT-GGGGATCGG
* * * * * *
34011056 CCCAGTCCCCCCTACGTGCTGTCGATCCTGTTGCCGCAACCCTCGGCCCGATTCGATCTTAGACT
189 CCCGGTCCCCCCGATGTGCT-TCCATCCTGCTGCCGCAACCCTCGGTCCGATTCGATCTTAGACT
* *
34011121 GGGAATGAACTTCATATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCATGAAATG
253 GGGAATGAACTTCGTATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCATGAAACG
**
34011186 AGCGTGCGGGCGCTGAGCCGGTC
318 AGCGTGCGGGCGCTGAGCCGACC
34011209 GAAGAGGCATAATGCGCAAGCCGAGGATCGACCTGATCCCCCTCTGCGTGCTGCCAGTCCCGCTG
1 GAAGAGGCATAATGCGCAAGCCGAGGATCGACCTGATCCCCCTCTGCGTGCTGCCAGTCCCGCTG
*
34011274 TCACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCTACCCAC
66 CCACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCTACCCAC
* *
34011339 GAAATGGGCGTGCGGGCATTCAACCGGTCAAAGAGGAAGAATGCGCAAGCTGGGGATCGGTCCGG
131 GAAATGGGCGTGCGGGC-TTCAACCGGTCAAAGAGGAA-AATGTGCAAGCTGGGGATCGGCCCGG
*
34011404 TCCCCCCGATGTGCTCTCCATCCTGCTGCCGTAACCCTCGGTCCGATTCGATCTTAGACTGGGAA
194 TCCCCCCGATGTGCT-TCCATCCTGCTGCCGCAACCCTCGGTCCGATTCGATCTTAGACTGGGAA
*
34011469 TGAACTTCGTATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAACGT
258 TGAACTTCGTATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGT
* * *
34011534 TCGGGTGCTGAGCCAACC
323 GCGGGCGCTGAGCCGACC
* * * * * * * **
34011552 GGAGAGGCATAATGCACAGGTCGAGGATC-AACTCGGTCCCCTTCTGCGTGCTGCTTGTCCCGCT
1 GAAGAGGCATAATGCGCAAGCCGAGGATCGACCT-GATCCCCCTCTGCGTGCTGCCAGTCCCGCT
* * * *
34011616 GCCACAACCCTCGGTCCGACTGGGG-TTAGAGAGGGAATGAACTCCCTATGCCTAAGCCAACCCA
65 GCCACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCTACCCA
* * ** * * *
34011680 CGAAATGGGCGTGTGGG-TGCTAACCCGACCAAAGAGGCATAATGTGCAAGCCGGGGATTGGCCC
130 CGAAATGGGCGTGCGGGCTTC-AA-CCGGTCAAAGAGG-AAAATGTGCAAGCTGGGGATCGGCCC
* * *
34011744 GGTCCCCCTCTG-TGTG-TTGCCAAT-CTCGCTGCCACAACCCTCGGTCTG-GTCTGATCTTAGA
192 GGTCCCCC-C-GATGTGCTT-CC-ATCCT-GCTGCCGCAACCCTCGGTCCGATTC-GATCTTAGA
* * * * * * *
34011805 CT-GAAATGAACTCCGTATGCCTAAACTGGGGATGAAGTCCGTATGCCTAAGTCAACCCACGAAA
251 CTGGGAATGAACTTCGTATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCATGAAA
*
34011869 CGAGCGTGCGGGCGCTCAGCCGA-C
316 CGAGCGTGCGGGCGCTGAGCCGACC
* ** * *
34011893 TAGAGAGGCAGGATGCGCAAGTCGGGGATCGA
1 GA-AGAGGCATAATGCGCAAGCCGAGGATCGA
34011925 ACCGGTGATA
Statistics
Matches: 615, Mismatches: 83, Indels: 37
0.84 0.11 0.05
Matches are distributed among these distances:
340 2 0.00
341 4 0.01
342 198 0.32
343 267 0.43
344 143 0.23
345 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (340 bp):
GAAGAGGCATAATGCGCAAGCCGAGGATCGACCTGATCCCCCTCTGCGTGCTGCCAGTCCCGCTG
CCACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCTACCCAC
GAAATGGGCGTGCGGGCTTCAACCGGTCAAAGAGGAAAATGTGCAAGCTGGGGATCGGCCCGGTC
CCCCCGATGTGCTTCCATCCTGCTGCCGCAACCCTCGGTCCGATTCGATCTTAGACTGGGAATGA
ACTTCGTATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCG
GGCGCTGAGCCGACC
Found at i:34013203 original size:158 final size:158
Alignment explanation
Indices: 34012701--34013266 Score: 527
Period size: 159 Copynumber: 3.6 Consensus size: 158
34012691 ACTCCATATG
* *
34012701 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGTGTACGGGGCGCTCAA
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGTGTAC-GGGCGCTCAG
* * ** ** * * * *
34012766 TCGATCGGAGAGGTAGAATATGCAAGCCAGGGA-TCGGCCCGGTCCCCCCTACGTGCTATTGATC
65 CCGATCGGAGAGGCAGAATGCGCAAGCTGGGGATTC-GCCCGATCCCCCCTGCGTGCTGTCGATC
* *
34012830 CTACTACTGCAACCTTCAGTCTGGTCTGAT
129 CTACTACCGCAACCCTCAGTCTGGTCTGAT
* * * * * *
34012860 GTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACTCATGAAATGAGTGTGCGGGCGTTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGTGTACGGGCGCTCAG
* * *
34012924 CCGACCGGAGAGGCATAATGCGCAAG-TCGGGGA-TCGACCC-AGTCCCCCTCTGTGTGCTGTCG
65 CCGATCGGAGAGGCAGAATGCGCAAGCT-GGGGATTCG-CCCGA-TCCCCC-CTGCGTGCTGTCG
* * * * **
34012986 GTGCC-GCTACCACAACCCTCAGTCT-GACTAGGG
126 AT-CCTACTACCGCAACCCTCAGTCTGGTCT-GAT
* * * * *
34013019 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTACGGGTGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGTGTACGGGCGCTCAGC
* * * * *
34013084 CGGTCGGAAAGGCAGAATGCACAAGCTGGGGATTTGCCCGATCCCCCCTGCGTGCTGCCGATCCT
66 CGATCGGAGAGGCAGAATGCGCAAGCTGGGGATTCGCCCGATCCCCCCTGCGTGCTGTCGATCCT
34013149 ACTACCGCAACCCTCAGTCTGGTCTGAT
131 ACTACCGCAACCCTCAGTCTGGTCTGAT
* ** * ** * *
34013177 CTTAGAC-TAGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCATGCGGGCACTCAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGTGTACGGGCGCTCAG
* * * *
34013241 CCGACCAGAGAGGTAGGATGCGCAAG
65 CCGATCGGAGAGGCAGAATGCGCAAG
34013267 TCGATGATCG
Statistics
Matches: 323, Mismatches: 70, Indels: 29
0.77 0.17 0.07
Matches are distributed among these distances:
157 4 0.01
158 149 0.46
159 163 0.50
160 7 0.02
ACGTcount: A:0.25, C:0.28, G:0.27, T:0.20
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGTGTACGGGCGCTCAGC
CGATCGGAGAGGCAGAATGCGCAAGCTGGGGATTCGCCCGATCCCCCCTGCGTGCTGTCGATCCT
ACTACCGCAACCCTCAGTCTGGTCTGAT
Found at i:34014464 original size:26 final size:26
Alignment explanation
Indices: 34014435--34014487 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34014425 CCAGTCTGAT
34014435 CTTAGAC-TGGGAATGAACTCCATATG
1 CTTAGACAT-GGAATGAACTCCATATG
*
34014461 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCATATG
34014487 C
1 C
34014488 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:34015224 original size:26 final size:26
Alignment explanation
Indices: 34015186--34015238 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
34015176 GGCTCAAAAT
34015186 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
34015212 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
34015238 C
1 C
34015239 CTAAGCCAAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34015637 original size:26 final size:26
Alignment explanation
Indices: 34015608--34015660 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
34015598 TCGATCCGAT
34015608 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
34015634 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
34015660 C
1 C
34015661 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34016004 original size:25 final size:26
Alignment explanation
Indices: 34015976--34016027 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
34015966 CCGGTCCGAT
*
34015976 CTTAGAC-TGGAATGAACTCTGTATG
1 CTTAGACATGGAATAAACTCTGTATG
*
34016001 CTTAGTCATGGAATAAACTCTGTATG
1 CTTAGACATGGAATAAACTCTGTATG
34016027 C
1 C
34016028 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 6 0.25
26 18 0.75
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.33
Consensus pattern (26 bp):
CTTAGACATGGAATAAACTCTGTATG
Found at i:34017922 original size:330 final size:337
Alignment explanation
Indices: 34017507--34018115 Score: 828
Period size: 330 Copynumber: 1.8 Consensus size: 337
34017497 CCGCTACCAC
*
34017507 AACCCTCGGTCCGACAGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAA
1 AACCCTCAGTCCGACAGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAA
* * *
34017572 CAGGCGTGCGGGCTCTCAGCCGGCCAGAAAGGCAGAATGCGCAAGCCGAGGATCGGCTCGGTGCC
66 CAGGCATGCGGGCTCTCAGCCGACCAGAAAGGCAGAATGCGCAAGCCGAGGATCGGCCCGGT-CC
* * * * * * *
34017637 CTCTGCATGCTACCGATCC-T-ACT-G-C-C-G-C-AACCCTCGATCTGGTTCGATCTTAGATTG
130 CCCTACATGATACCGATCCGTGACTGGTCGCTGCCGAACCCTCGATCCGGTCCAATCTTAGACTG
* * *
34017694 GGAATGAACTCCGTATGCTTAGAC-TGAAGATGAACTCCGTATGCCTAAGTCAACCCATGAAACG
195 GGAATGAACTCCGTATGCTTAGACATGAA-ATGAACTCAGTATGCCTAAGCCAACCCATAAAACG
*
34017758 AGCG-GACGGGCGCTCAGCTGGCAGGAGATGCCGGTCCCCTTCTGCGTTCTGTCAATCCCGTTGC
259 AGCGTG-CAGGCGCTCAGCTGGCAGGAGATGCCGGTCCCCTTCTGCGTTCTGTCAATCCCGTTGC
34017822 GGGTCTTGCTGCCAT
323 GGGTCTTGCTGCCAT
* * *
34017837 AACCCTCAGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAA
1 AACCCTCAGTCCGACAGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAA
* *
34017902 C-GAGCATGCGGG-TGCTCAGCCGACCGGAAAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTC
66 CAG-GCATGCGGGCT-CTCAGCCGACCAGAAAGGCAGAATGCGCAAGCCGAGGATCGGCCCGGTC
* * *
34017965 CCCCTACATGATACCGATCCTGTGGCTGGTCTGCTGCCGTAACCCTTGGTCCGGTCCAATCTTAG
129 CCCCTACATGATACCGATCC-GTGACTGGTC-GCTGCCG-AACCCTCGATCCGGTCCAATCTTAG
* * *
34018030 ACTGGGAATGAACTTCGTATGCTTAGACATGGAATGAACTCAGTATGTCTAAGCCAACCCATAAA
191 ACTGGGAATGAACTCCGTATGCTTAGACATGAAATGAACTCAGTATGCCTAAGCCAACCCATAAA
34018095 ACGAGCGTGCAGGCGCTCAGC
256 ACGAGCGTGCAGGCGCTCAGC
34018116 CGATCGAAGA
Statistics
Matches: 238, Mismatches: 26, Indels: 20
0.84 0.09 0.07
Matches are distributed among these distances:
329 20 0.08
330 114 0.48
331 1 0.00
332 2 0.01
333 1 0.00
334 1 0.00
336 1 0.00
337 1 0.00
338 1 0.00
340 92 0.39
341 4 0.02
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.20
Consensus pattern (337 bp):
AACCCTCAGTCCGACAGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAA
CAGGCATGCGGGCTCTCAGCCGACCAGAAAGGCAGAATGCGCAAGCCGAGGATCGGCCCGGTCCC
CCTACATGATACCGATCCGTGACTGGTCGCTGCCGAACCCTCGATCCGGTCCAATCTTAGACTGG
GAATGAACTCCGTATGCTTAGACATGAAATGAACTCAGTATGCCTAAGCCAACCCATAAAACGAG
CGTGCAGGCGCTCAGCTGGCAGGAGATGCCGGTCCCCTTCTGCGTTCTGTCAATCCCGTTGCGGG
TCTTGCTGCCAT
Found at i:34018394 original size:159 final size:158
Alignment explanation
Indices: 34018050--34018434 Score: 409
Period size: 158 Copynumber: 2.4 Consensus size: 158
34018040 AACTTCGTAT
* * * * *
34018050 GCTTAGACATGGAATGAACTCAGTATGTCTAAGCCAACCCATAAAACGAGCGTGCAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
** *
34018115 CCGATCGAAGAGGCAGAATGCGTAAGTCGAGGATCGGCCTGGGGCCCCCTGCGTGCTGTCGATCC
66 CCGATCGAAGAGGCAGAATGCGTAAGTCGAGGATCGGCCCAGGCCCCCCTGCGTGCTGTCGATCC
* * *
34018180 TACTGCCTCAACCATCGGTACGGTCTGA
131 CACTGCCACAACCATCGGTACGGTCGGA
* * * ** * * *
34018208 TCTTAGAC-TAGTAATGAACTTCGTATGCCTAAGTTATCCCATGAAATGAGCGTGCGGGCGTTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCA
* * * * *
34018272 GCCGATCGGAGAGGCATAATGCGTAAGTCCG-GGATTGGCCCAGTCCCCCTCTGCGTGCTGTCGG
65 GCCGATCGAAGAGGCAGAATGCGTAAGT-CGAGGATCGGCCCAGGCCCCC-CTGCGTGCTGTCGA
* * *
34018336 TCCCGCTGCCACAACCCTCGGT-CTGG-CAGGG
128 TCCCACTGCCACAACCATCGGTAC-GGTC-GGA
* * * * *
34018367 GCTTAGACATGGAATGAACTCCCTATGCCAAAGCCAACCCACGAAATGGGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
34018432 CCG
66 CCG
34018435 GCCAGAGAGG
Statistics
Matches: 181, Mismatches: 40, Indels: 11
0.78 0.17 0.05
Matches are distributed among these distances:
157 1 0.01
158 90 0.50
159 89 0.49
160 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.29, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
CCGATCGAAGAGGCAGAATGCGTAAGTCGAGGATCGGCCCAGGCCCCCCTGCGTGCTGTCGATCC
CACTGCCACAACCATCGGTACGGTCGGA
Found at i:34019264 original size:26 final size:26
Alignment explanation
Indices: 34019213--34019265 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34019203 CCAGTCTGAT
*
34019213 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
34019239 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
34019265 C
1 C
34019266 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:34019982 original size:26 final size:26
Alignment explanation
Indices: 34019944--34019996 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34019934 GGCTCAAAAT
*
34019944 CTTAGACTGGGAATGACCTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
34019970 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
34019996 C
1 C
34019997 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:34020398 original size:159 final size:158
Alignment explanation
Indices: 34019969--34020436 Score: 454
Period size: 159 Copynumber: 2.9 Consensus size: 158
34019959 ACCTCCATAT
*
34019969 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAATGAGCGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAATGAGCGTACGGGCACTCAG
* ** * * * * * **
34020034 TCGGTTGGAGAGGTAGAATGTGCAAGCCGGGGATCGGCCCGATCCCCCCCTACATGCTATCGATC
66 CCGG-CCGAGAGGCAGAATGCGCAAGCCGGGGATCGGCACGATCCCCCTCTACGTGCTGCCGATC
* ** * *
34020099 CTGCTACTGCAACCCTCGGTCTGGTTTGA
130 CCGCTACCACAACCCTCGGTCTGGCTGGA
* * * * * * ** * *
34020128 TCTTAGAC-TGGGAATGAACTACGTATGCATAAGTCAACCCATGAAATAAGCGTGGGGGCATTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCATGAAATGAGCGTACGGGCACTCA
** * * * * *
34020192 GCTAGCCGAAGAGGCATAATGCGCAAGCCGGGGATCAGCTCGGTCCCCCTCTACGTGCTGCCAAT
65 GCCGGCCG-AGAGGCAGAATGCGCAAGCCGGGGATCGGCACGATCCCCCTCTACGTGCTGCCGAT
* * * *
34020257 CCCGTTGCCACAACCCTTGGTCTGGCTGGG
129 CCCGCTACCACAACCCTCGGTCTGGCTGGA
* * *
34020287 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGTACTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAATGAGCGTACGGGCACTCAG
** * *
34020352 CCGGCCAGAGAGGCAGAATGCGCAAGTTGGGGATCGGAACGAT-CCCCTCTGCGTGCTGCCGATC
66 CCGGCC-GAGAGGCAGAATGCGCAAGCCGGGGATCGGCACGATCCCCCTCTACGTGCTGCCGATC
** * *
34020416 CTACTATCGCAACCCTCGGTC
130 CCGCTACCACAACCCTCGGTC
34020437 CGGTCCAATC
Statistics
Matches: 239, Mismatches: 66, Indels: 9
0.76 0.21 0.03
Matches are distributed among these distances:
158 35 0.15
159 202 0.85
160 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAATGAGCGTACGGGCACTCAG
CCGGCCGAGAGGCAGAATGCGCAAGCCGGGGATCGGCACGATCCCCCTCTACGTGCTGCCGATCC
CGCTACCACAACCCTCGGTCTGGCTGGA
Found at i:34021136 original size:26 final size:26
Alignment explanation
Indices: 34021100--34021152 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
34021090 CCGGTCCGAT
*
34021100 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
34021126 CTTAGGCTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
34021152 C
1 C
34021153 CTATGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.23, C:0.19, G:0.30, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34021666 original size:26 final size:26
Alignment explanation
Indices: 34021625--34021677 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
34021615 TCGGTCCAAT
34021625 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
34021651 CTTAGACTAGGG-ATGAACTCTGTATG
1 CTTAGACT-GGGAATGAACTCTGTATG
34021677 C
1 C
34021678 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:34030225 original size:354 final size:355
Alignment explanation
Indices: 34029717--34030390 Score: 785
Period size: 354 Copynumber: 1.9 Consensus size: 355
34029707 CTCGGTCTGG
* * *
34029717 TCTGATCTTAGACTAGGAATGAACTGGTATGCTTAGACTGTGGATGAACTCCGTATGCCTAAGTC
1 TCTGATCTGAGACTAGGAATGAACTGGTATGCTTAGACTGTGAATGAACTCCGTATGCCTAAGCC
* * * * * * *
34029782 AACCCATGAAATAAGCGTGCGGGCGTTCAACCGGCCAGAGAGGCATAATGAACAAGTTGAGGATC
66 AACCCACGAAACAAGCGTGCGGGCATTCAACCGACCAGAGAGGCAGAATGAACAAGTCGAGGACC
* * * *
34029847 AGCCCGGTCCTCCTTTGCGTGCTGTCGGTCCCGCTGCCACAACCC-TCGTCT-GACTGGGGCTTG
131 AGCCCGGTCCTCCTCTGCGTGCTGTCGATCCCGCTGCCACAACCCTTCGTCTAGACT-GAGCTTA
*
34029910 GACAT-GGAATGAACTCTGTATGCCTAAGC-CAA-CACACGAAACGAGCGTGCG-GGCGCTCAGC
195 GAC-TGGGAATGAACTCCGTATGCCTAA-CTCAACCA-ACGAAACGAGCGTG-GAGGCGCTCAGC
* * * * *
34029971 C-AGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCAGCCCGGTCCCCCCCTGCGTGCTGTTGATC
256 CGA-CCGGAAAGGCAGAACGCACAAGCCAGGGATCAGCCCGGTCCCCCCCTGCGTGCTGTCGATC
34030035 CTGCTACTGGTCCTGCTGTTGCAACCCTCGATCCGA
320 CTGCTACTGGTCCTGCTGTTGCAACCCTCGATCCGA
*
34030071 TCTGATCTGAGACTA-GAATGAACTCTGTATGCTTAGACATG-GAATGAACTCCGTATGCCTAAG
1 TCTGATCTGAGACTAGGAATGAACT-GGTATGCTTAGAC-TGTGAATGAACTCCGTATGCCTAAG
* * * * * * *
34030134 CCAACCCACGAAACGAGCGTGCGGGCATTTAGCCGATCGGAGAGGCAGAATGCACAAGTCGGGGA
64 CCAACCCACGAAACAAGCGTGCGGGCATTCAACCGACCAGAGAGGCAGAATGAACAAGTCGAGGA
* * * * * * *
34030199 CC-GACCTGGTCC-CTCTCTGTGTGCTGTCGATCCTGTTGCCACAACCCTTGGTCTAGTCTGATC
129 CCAG-CCCGGTCCTC-CTCTGCGTGCTGTCGATCCCGCTGCCACAACCCTTCGTCTAGACTGAGC
* *
34030262 TTAGACTGGGAATGAACTCCGTATGCCTAACTCAACCAACGAAATGAGCGTGGAGGCGCTGAGCC
192 TTAGACTGGGAATGAACTCCGTATGCCTAACTCAACCAACGAAACGAGCGTGGAGGCGCTCAGCC
* ** * ***
34030327 GACCGGAAAGGCATAACGCACAAGCTGGGGATCGGCCCGGTCCCTTTCTGCGTGCTGTCGATCC
257 GACCGGAAAGGCAGAACGCACAAGCCAGGGATCAGCCCGGTCCCCCCCTGCGTGCTGTCGATCC
34030391 CGCTGCCATA
Statistics
Matches: 265, Mismatches: 44, Indels: 21
0.80 0.13 0.06
Matches are distributed among these distances:
353 11 0.04
354 137 0.52
355 111 0.42
356 6 0.02
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (355 bp):
TCTGATCTGAGACTAGGAATGAACTGGTATGCTTAGACTGTGAATGAACTCCGTATGCCTAAGCC
AACCCACGAAACAAGCGTGCGGGCATTCAACCGACCAGAGAGGCAGAATGAACAAGTCGAGGACC
AGCCCGGTCCTCCTCTGCGTGCTGTCGATCCCGCTGCCACAACCCTTCGTCTAGACTGAGCTTAG
ACTGGGAATGAACTCCGTATGCCTAACTCAACCAACGAAACGAGCGTGGAGGCGCTCAGCCGACC
GGAAAGGCAGAACGCACAAGCCAGGGATCAGCCCGGTCCCCCCCTGCGTGCTGTCGATCCTGCTA
CTGGTCCTGCTGTTGCAACCCTCGATCCGA
Found at i:34030667 original size:158 final size:159
Alignment explanation
Indices: 34030102--34030802 Score: 583
Period size: 159 Copynumber: 4.4 Consensus size: 159
34030092 ACTCTGTATG
*
34030102 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCATTTAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTTAGC
* * * * * *
34030167 CGATCGGAGAGGCAGAATGCACAAGTCGGGGACCGACCTGGTCCCTCTCTGTGTGCTGTCGATCC
66 CGACCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGGTCCCTCTCTGCGTGCTGTCGATCC
* * *
34030232 TGTTGCCACAACCCTTGGT-CTAGTCTGAT
131 TGCTGCCACAACCCTTGGTCCGA-TCCGAT
* * * *
34030261 CTTAGAC-TGGGAATGAACTCCGTATGCCTAA-CTCAACCAACGAAATGAGCGTG-GAGGCGCTG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGC-CAACCCACGAAACGAGCGTGCG-GGCACTT
* * * * *
34030323 AGCCGACCGGAAAGGCATAACGCACAAGCTGGGGATCGGCCCGGTCCCTTTCTGCGTGCTGTCGA
63 AGCCGACCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGGTCCCTCTCTGCGTGCTGTCGA
* * * * ** **
34030388 TCCCGCTGCCATAACCCTTGGTCTGGTTGGGG
128 TCCTGCTGCCACAACCCTTGGTCCGATCCGAT
* * * * *
34030420 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCATGCGGGCACTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTTAG-
* * ** * * * *
34030485 CC-ACCGTAGAGGAAGAATGTGCAAGCCAGGGATCGGCCCAGTTCCC-CT-TGCGTGCTATCAAT
65 CCGACCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCC-GGTCCCTCTCTGCGTGCTGTCGAT
* ** * *
34030547 CCTGCTACGGCAACACTCGGTCCGATCCGAT
129 CCTGCTGCCACAACCCTTGGTCCGATCCGAT
* ** *
34030578 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGTTTAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTTAGC
** * * * * * * * *
34030643 CGGTCGGAGAGGTAGAATACGCAAGTCGGGGA-CTGACCCCGTCCCCCCCTGCGGTGCTGGTCGC
66 CGACCGGAGAGGCAGAATGCACAAGCCGGGGATC-GGCCCGGTCCCTCTCTGC-GTGCT-GTCG-
* * * *
34030707 ATCCTAGCTACCGACAACCCCCTGGTTCCGGTCTGAT
127 ATCCT-GCTGCC-ACAA-CCCTTGG-TCCGATCCGAT
** *
34030744 CTTAGAC-TGGGAGATGAACTCCGTATGCCTAAGTTAAACCCATGAAACGCAGCGTGCGG
1 CTTAGACAT-GGA-ATGAACTCCGTATGCCTAAG-CCAACCCACGAAACG-AGCGTGCGG
34030803 AGAACTGAGT
Statistics
Matches: 426, Mismatches: 92, Indels: 38
0.77 0.17 0.07
Matches are distributed among these distances:
157 6 0.01
158 116 0.27
159 210 0.49
160 15 0.04
161 2 0.00
162 5 0.01
163 5 0.01
164 3 0.01
165 5 0.01
166 19 0.04
167 20 0.05
168 11 0.03
169 9 0.02
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.20
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTTAGC
CGACCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGGTCCCTCTCTGCGTGCTGTCGATCC
TGCTGCCACAACCCTTGGTCCGATCCGAT
Found at i:34031125 original size:26 final size:26
Alignment explanation
Indices: 34031081--34031133 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
34031071 TCGGTCTGAT
**
34031081 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAACAAACTCCGTATG
* *
34031107 CTTAGACTGGGGACAAACTCTGTATG
1 CTTAGACTGGGAACAAACTCCGTATG
34031133 C
1 C
34031134 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAACAAACTCCGTATG
Found at i:34032384 original size:26 final size:26
Alignment explanation
Indices: 34032355--34032407 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34032345 CCGGTCCGAT
34032355 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
34032381 CTTAGACATGGAATGAAGTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
34032407 C
1 C
34032408 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:34033055 original size:26 final size:26
Alignment explanation
Indices: 34033015--34033064 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
34033005 CGGTCTGATC
*
34033015 TTAGACTGGGAATGAACTTTGTATGG
1 TTAGACTGGGAATGAACTCTGTATGG
*
34033041 TTAGACTGGGGATGAACTCTGTAT
1 TTAGACTGGGAATGAACTCTGTAT
34033065 AACTACGTCA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.10, G:0.30, T:0.34
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCTGTATGG
Found at i:34034575 original size:26 final size:26
Alignment explanation
Indices: 34034537--34034589 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
34034527 CTAGTTTGAT
*
34034537 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATCAACTCCGTATG
*
34034563 CTTAGAC-ATGGAATCAACTTCGTATG
1 CTTAGACTA-GGAATCAACTCCGTATG
34034589 C
1 C
34034590 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATCAACTCCGTATG
Found at i:34035725 original size:728 final size:729
Alignment explanation
Indices: 34034296--34035750 Score: 2058
Period size: 728 Copynumber: 2.0 Consensus size: 729
34034286 ATGAACTCTA
* * * * *
34034296 TATGCCTAAGTTAACTCATGAAACGAGCGTACTGGCGATCCCGTTGCCGGTCCTACTGCCACAAC
1 TATGCCTAAGTCAACCCATGAAACGAGCATACTGCCGATCCCGCTGCCGGTCCTACTGCCACAAC
34034361 CCTCGGTCCGGCTGGGGCTTAGATATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGA
66 CCTCGGTCCGGCTGGGGCTTAGATATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGA
* * *
34034426 GCGTGCGAGGGCTCAACCGACCGGAGGGGCAGAATACCCAAGTCAGGGATCGACCCGGTCTTTCC
131 GCGTGCGAGGGCTCAACCAACCGAAGGGGCAGAATACCCAAGTCAGGGATCGACCCGGTCTTCCC
* * * *
34034491 CTGCATGCTGCTGGTCTTACTGCTGCAACCTTCGATCTAGTTTGATCTTAGACTAGGAATGAACT
196 CTCCATGCTGCTAGTCCTACTGCCGCAACCTTCGATCTAGTTTGATCTTAGACTAGGAATGAACT
* * * *
34034556 CCGTATGCTTAGACATGGAATCAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGT
261 CCGTATGCTTAGACATGAAATCAACTTCGTATGCCTAAGCCAACCCACGAAACGAACGTGCAGGC
* * *
34034621 GTTCAACCGACTAGAAAGGGAGAATGCATAAGTCGGGGACCGGTCCGATCCCCCCTACGTGCTAT
326 GTTCAACCGACTAGAAAGGCAGAATGCATAAGTCGAGGACCGATCCGATCCCCCCTACGTGCTAT
* * *
34034686 TGATCCTGCTACCGCAACCCTCGATTCGGTTTGATCTTAGACTGGGAATGAACTTCGTATGCCTA
391 TGATCCTGCTACCGCAACCCTCAATTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * * * *
34034751 AGTCAACCCATGAAACGAGCGTGCGGGCGCTGAGCTGGTCGGAGAGGCATAATGCGTAACCCGAG
456 AGTCAACCCACGAAACGAGCGTACGGGCGCTGAGCCGGCCAGAGAGCCATAATGCGTAACCCGAG
* * * * *
34034816 GATCGGCCCGATCCTCCTCTACATGCTGCCACTCCCGCTGCCACTACCCTTGGTCTGACTGGGGC
521 GATCGGCCCGATCCCCCTCTACATGCTGCCACTCCCGCTACCACAACCCTCGGTCAGACTGGGGC
* * *
34034881 TTAGACATGTAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCTTACGGGTGGTCAGCT
586 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACAGGCTTACGGGCGGTCAGCT
* * * * *
34034946 GGTTGGAGAGGTAGAATGTGTAAGCCGGGGATCGACCCGGTCCCTCCTACGTGCTGTCGATCCTA
651 GGTTGGAGAGGCAGAATGCGTAAGCCGGGGATCGACCCAGTCCCCCCTACGTGCTGCCGATCCTA
34035011 TTGTCGCAACTCCG
716 TTGTCGCAACTCCG
* *
34035025 TATGCCTAAGTCAACCCATGAAATGAGCATGCTGCCGATCCCGCTGCCGGTCCTACTGCCACAAC
1 TATGCCTAAGTCAACCCATGAAACGAGCATACTGCCGATCCCGCTGCCGGTCCTACTGCCACAAC
*
34035090 CCTCGGTTCGGCTGGGGCTTAGATATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGA
66 CCTCGGTCCGGCTGGGGCTTAGATATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGA
* * * * *
34035155 GCGTGCG-GGTGCTCAGCCAATCGAAGGGGCAGAATGCGCAAGTC-GGGATCGGCCCGGTCTTCC
131 GCGTGCGAGG-GCTCAACCAACCGAAGGGGCAGAATACCCAAGTCAGGGATCGACCCGGTCTTCC
* * *
34035218 CCTCCGTGCTGCTAGTCCTACTGCCGCAACCTTCGATCTGGTTTGATCTTAGTCTAGGAATGAAC
195 CCTCCATGCTGCTAGTCCTACTGCCGCAACCTTCGATCTAGTTTGATCTTAGACTAGGAATGAAC
* * *
34035283 TCTGTATGGTTAGACATGAAATCAAC-TCTGTATGCCTAAGCCAACCCACGAAATGAACGTGCAG
260 TCCGTATGCTTAGACATGAAATCAACTTC-GTATGCCTAAGCCAACCCACGAAACGAACGTGCAG
** * * * * * **
34035347 GCGTTCAATTG-GTCGGAGAGGCAGAATGCGTAAGTCGAGGATCGATCCTG-TCCCCCCTGTGTG
324 GCGTTCAACCGACT-AGAAAGGCAGAATGCATAAGTCGAGGACCGATCC-GATCCCCCCTACGTG
**
34035410 CTATTGATCCTGCTGTCGCAACCCTCAATTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
387 CTATTGATCCTGCTACCGCAACCCTCAATTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* **
34035475 CCTAAGTCAACCCACGAAACGAGTGTACGGGCGCTGAGCCGGCCAGAGAGCCATAATGCGTAAGT
452 CCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTGAGCCGGCCAGAGAGCCATAATGCGTAACC
* * * *** * *
34035540 TGGGGATTGGCCCGATCCCCCTCTGTGTGCTGCCAGTCCCGTTACCACAACCCTCGGTCCAG-CT
517 CGAGGATCGGCCCGATCCCCCTCTACATGCTGCCACTCCCGCTACCACAACCCTCGGT-CAGACT
** *
34035604 GGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAGGCTTGCGGGCGGT
581 GGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACAGGCTTACGGGCGGT
* * *
34035669 CAGCTGGTTGGAGAGGCAGAATGCGTAAGTCGGTGATCGGCCCAGTCCCCCCTACGTGCTGCCGA
646 CAGCTGGTTGGAGAGGCAGAATGCGTAAGCCGGGGATCGACCCAGTCCCCCCTACGTGCTGCCGA
* *
34035734 TCCTTTTGTGGCAACTC
711 TCCTATTGTCGCAACTC
34035751 TCGGTCTGGT
Statistics
Matches: 636, Mismatches: 85, Indels: 11
0.87 0.12 0.02
Matches are distributed among these distances:
727 3 0.00
728 473 0.74
729 160 0.25
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.22
Consensus pattern (729 bp):
TATGCCTAAGTCAACCCATGAAACGAGCATACTGCCGATCCCGCTGCCGGTCCTACTGCCACAAC
CCTCGGTCCGGCTGGGGCTTAGATATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGA
GCGTGCGAGGGCTCAACCAACCGAAGGGGCAGAATACCCAAGTCAGGGATCGACCCGGTCTTCCC
CTCCATGCTGCTAGTCCTACTGCCGCAACCTTCGATCTAGTTTGATCTTAGACTAGGAATGAACT
CCGTATGCTTAGACATGAAATCAACTTCGTATGCCTAAGCCAACCCACGAAACGAACGTGCAGGC
GTTCAACCGACTAGAAAGGCAGAATGCATAAGTCGAGGACCGATCCGATCCCCCCTACGTGCTAT
TGATCCTGCTACCGCAACCCTCAATTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTA
AGTCAACCCACGAAACGAGCGTACGGGCGCTGAGCCGGCCAGAGAGCCATAATGCGTAACCCGAG
GATCGGCCCGATCCCCCTCTACATGCTGCCACTCCCGCTACCACAACCCTCGGTCAGACTGGGGC
TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACAGGCTTACGGGCGGTCAGCT
GGTTGGAGAGGCAGAATGCGTAAGCCGGGGATCGACCCAGTCCCCCCTACGTGCTGCCGATCCTA
TTGTCGCAACTCCG
Found at i:34036495 original size:26 final size:26
Alignment explanation
Indices: 34036456--34036508 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34036446 GGCTCAAACT
*
34036456 CTTAGACTGAGAATGAACTCTGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
34036482 CTTAGACATG-GAATGAACTCCGTATG
1 CTTAGAC-TGAGAATGAACTCCGTATG
34036508 C
1 C
34036509 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:34036784 original size:158 final size:158
Alignment explanation
Indices: 34036481--34036768 Score: 427
Period size: 158 Copynumber: 1.8 Consensus size: 158
34036471 AACTCTGTAT
* *
34036481 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAAGCACTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGAGTGCAAGCACTCAA
*
34036546 CCGGCCGAAGAGGAAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCTCTACGTGCTCCGATCC
66 CCGGCCGAAGAGGAAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCTCTACGTGCTCCAATCC
34036611 CACTGCCACAACCCTCGGTCTGGCTGGC
131 CACTGCCACAACCCTCGGTCTGGCTGGC
* * *
34036639 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGAGTGC-GGGAGCTCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGAGTGCAAGCA-CTCA
* * * ** * *
34036703 GCCGGCCGGAGAGGCAGAATGCGCAAGTTGGGGATCGGCCCGATCCCCC-CTGCGTGCTACCAAT
65 ACCGGCCGAAGAGGAAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCTCTACGTGCT-CCAAT
34036767 CC
129 CC
34036769 TGCTGTCGTA
Statistics
Matches: 115, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
157 10 0.09
158 105 0.91
ACGTcount: A:0.25, C:0.33, G:0.27, T:0.15
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGAGTGCAAGCACTCAA
CCGGCCGAAGAGGAAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCTCTACGTGCTCCAATCC
CACTGCCACAACCCTCGGTCTGGCTGGC
Found at i:34036815 original size:158 final size:158
Alignment explanation
Indices: 34036485--34036817 Score: 386
Period size: 158 Copynumber: 2.1 Consensus size: 158
34036475 CTGTATGCTT
* *
34036485 AGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAAGCACTCAACCGG
1 AGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGAGTGCAAGCACTCAACCGG
*
34036550 CCGAAGAGGAAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCTCTACGTGCTCCGATCCCACT
66 CCGAAGAGGAAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCTCTACGTGCTCCAATCCCACT
* * * *
34036615 GCCACAACCCTCGGTCTGGCTGGCGCTT
131 GCCACAACCCTCAGCCTGGCTGGAGCTA
* * * *
34036643 AGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGAGTGC-GGGAGCTCAGCCG
1 AGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGAGTGCAAGCA-CTCAACCG
* * ** * * **
34036707 GCCGGAGAGGCAGAATGCGCAAGTTGGGGATCGGCCCGATCCCCC-CTGCGTGCTACCAATCCTG
65 GCCGAAGAGGAAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCTCTACGTGCT-CCAATCCCA
* ** *
34036771 CTGTCGTAACCCTCAGCCTGGTCT-GATCTA
129 CTGCCACAACCCTCAGCCTGG-CTGGAGCTA
*
34036801 AGAC-TGGGAGTGAACTC
1 AGACAT-GGAATGAACTC
34036818 TGTATCCTTA
Statistics
Matches: 147, Mismatches: 24, Indels: 8
0.82 0.13 0.04
Matches are distributed among these distances:
157 11 0.07
158 134 0.91
159 2 0.01
ACGTcount: A:0.24, C:0.32, G:0.27, T:0.16
Consensus pattern (158 bp):
AGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGAGTGCAAGCACTCAACCGG
CCGAAGAGGAAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCTCTACGTGCTCCAATCCCACT
GCCACAACCCTCAGCCTGGCTGGAGCTA
Found at i:34036955 original size:184 final size:184
Alignment explanation
Indices: 34036640--34037000 Score: 431
Period size: 184 Copynumber: 2.0 Consensus size: 184
34036630 CTGGCTGGCG
* *
34036640 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGAGTGCGGGAGCTCAGC
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGAGTGCAGGAGCTCAGC
* * * * * * *
34036705 CGGCCGGAGAGGCAGAATGCGCAAGTTGGGGATCGGCCCGATCCCCCCTGCGTGCTACCAATCCT
66 CGACCGGAGAGGCAGAATGCGCAAGCTAGGGACCGACCCGATCCCCCCAGCATGCTACCAATCCT
** * *
34036770 GCTGTC-GTAACCCTCAGC-CTGGTCTGATCTAAGACTGGGAGTGAACTCTGTATC
131 GCTACCAG-AACCCTCAGCTC-GGTCCGATCTAAGACTGGGAATGAACTCTGTATC
* * * * * * *
34036824 CTTATACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGATACGAGCGTGCAGGCGCTCAGT
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGAGTGCAGGAGCTCAGC
* * ** *
34036889 CGATCGGAGAGGCAGAATGTGCAAGCTAGGGACCGACCC-AGTCCCCCCAGCATGCTGTCGATCC
66 CGACCGGAGAGGCAGAATGCGCAAGCTAGGGACCGACCCGA-TCCCCCCAGCATGCTACCAATCC
* *
34036953 TGCTACCAGAACCCTCAGTTCGGTCCGATCTTAGACTGGGAATGAACT
130 TGCTACCAGAACCCTCAGCTCGGTCCGATCTAAGACTGGGAATGAACT
34037001 TCGTATGCCT
Statistics
Matches: 147, Mismatches: 27, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
183 1 0.01
184 144 0.98
185 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (184 bp):
CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGAGTGCAGGAGCTCAGC
CGACCGGAGAGGCAGAATGCGCAAGCTAGGGACCGACCCGATCCCCCCAGCATGCTACCAATCCT
GCTACCAGAACCCTCAGCTCGGTCCGATCTAAGACTGGGAATGAACTCTGTATC
Found at i:34037178 original size:159 final size:157
Alignment explanation
Indices: 34036824--34037543 Score: 619
Period size: 158 Copynumber: 4.5 Consensus size: 157
34036814 ACTCTGTATC
* * * * *
34036824 CTTATACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGATACGAGCGTGCAGGCGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
34036889 CGATCGGAGAGGCAGAATGTGCAAGCTAGGGACCGACCCAGTCCCCC-CAGCATGCTGTC-GATC
66 CGATCGAAGAGGCAGAATGCGCAAGCTGGGGATCGACCCAGTCCCCCTCTGCGTGCTGTCAG-TC
* * *
34036952 CTGCTACCAGAACCCTCAGTTCGG-TCCGAT
130 CTGCTACCACAACCCT--GTTCGGAT-GGAG
* * * ** *
34036982 CTTAGAC-TGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAATGAGCGTATGGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * *
34037046 CCGGTCGAAAAGGCATAATGTGCAAGCTGGGGATCGGCTCAGTCCCCCTCTGCGTGCTTTCAGTC
65 CCGATCGAAGAGGCAGAATGCGCAAGCTGGGGATCGACCCAGTCCCCCTCTGCGTGCTGTCAGTC
* * *
34037111 CCGCTACCACAACCCTTTCTCTGGATGGGG
130 CTGCTACCACAACCCTGT-TC-GGATGGAG
* * * *
34037141 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGTGGGTGCTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
34037206 CGATCGGAGAGGCAGAATGCGCAAGTTGGGGA-CTGGCCC-GATCCCCCT-TGCCTGCTGTCAAT
66 CGATCGAAGAGGCAGAATGCGCAAGCTGGGGATC-GACCCAG-TCCCCCTCTGCGTGCTGTCAGT
* * * * *
34037268 CCTGCTACCGCAACCCTCGGTCTGATGCAAT
129 CCTGCTACCACAACCCT-GTTCGGATG-GAG
* * * * *
34037299 CTTAGAC-TGGGAATGAACTCTGTATACCTAAGTCAACCCACGAAACGAGCGTGCGGGAGCTAAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * **
34037363 CCGATCGAAGAGGCATAATGCGCAAGCCGAGAATCGACCCAGTCCCCCTCCGCGTGTTACCAGTC
65 CCGATCGAAGAGGCAGAATGCGCAAGCTGGGGATCGACCCAGTCCCCCTCTGCGTGCTGTCAGTC
** * * * *
34037428 CAACTGCCACAAGCCTCGGTTCGGCTGGGG
130 CTGCTACCACAA-CC-CTGTTCGGATGGAG
** * * * * *
34037458 CTTAGACATGGAATGAACTCCCAATACCTAAGCCAACCCATGAAACGGGTGTGCGGGCGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
*
34037523 CGATCGGAGAGGCAGAATGCG
66 CGATCGAAGAGGCAGAATGCG
34037544 TAAGTCGAGG
Statistics
Matches: 446, Mismatches: 98, Indels: 35
0.77 0.17 0.06
Matches are distributed among these distances:
157 7 0.02
158 215 0.48
159 211 0.47
160 12 0.03
161 1 0.00
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.19
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGATCGAAGAGGCAGAATGCGCAAGCTGGGGATCGACCCAGTCCCCCTCTGCGTGCTGTCAGTCC
TGCTACCACAACCCTGTTCGGATGGAG
Found at i:34037336 original size:158 final size:159
Alignment explanation
Indices: 34036833--34037642 Score: 561
Period size: 158 Copynumber: 5.1 Consensus size: 159
34036823 CCTTATACAT
* * * ** *
34036833 GGAATGAACTCCGTATGCCTAAGCCAACCCATGATACGAGCGTGCAGGCGCTCAGTCGATCGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGATCGAAG
* * * * ** *
34036898 AGGCAGAATGTGCAAGCTAGGGACCGACCCAGTCCCCCCAGCATGCTGTCGATCCTGCTACCAG-
66 AGGCAGAATGCGCAAGCTGGGGACTGGCCCAGTCCCCCTTGCATGCTGTCAATCCTGCTACC-GC
* *
34036962 AACCCTCAGT-TCGGTCCGATCTTAGACTG
130 AACCCTCAGTCTCGATGCGATCTTAGACTG
* * * ** * * * *
34036991 GGAATGAACTTCGTATGCCTAAGTCAACCCACGAAATGAGCGTATGGGCGCTGAGCCGGTCGAAA
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGATCGAAG
* * * * * * * *
34037056 AGGCATAATGTGCAAGCTGGGGA-TCGGCTCAGTCCCCCTCTGCGTGCTTTCAGTCCCGCTACCA
66 AGGCAGAATGCGCAAGCTGGGGACT-GGCCCAGTCCCCCT-TGCATGCTGTCAATCCTGCTACCG
*** * **
34037120 CAACCCTTTCTCTGGATG-GGGCTTAGACAT-
129 CAACCCTCAGTCTCGATGCGATCTTAGAC-TG
* * * *
34037150 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGTGGGTGCTCAACCGATCGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGATCGAAG
* *
34037215 AGGCAGAATGCGCAAGTTGGGGACTGGCCC-GATCCCCCTTGCCTGCTGTCAATCCTGCTACCGC
66 AGGCAGAATGCGCAAGCTGGGGACTGGCCCAG-TCCCCCTTGCATGCTGTCAATCCTGCTACCGC
* *
34037279 AACCCTCGGTCT-GATGCAATCTTAGACTG
130 AACCCTCAGTCTCGATGCGATCTTAGACTG
* * * *
34037308 GGAATGAACTCTGTATACCTAAGTCAACCCACGAAACGAGCGTGCGGGAGCT-AAGCCGATCGAA
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA-CCGATCGAA
* * * * * * * * ** * ** *
34037372 GAGGCATAATGCGCAAGC-CGAGAATCGACCCAGTCCCCCTCCGCGTGTTACCAGTCCAACTGCC
65 GAGGCAGAATGCGCAAGCTGGGGACT-GGCCCAGTCCCCCT-TGCATGCTGTCAATCCTGCTACC
* * * * **
34037436 ACAAGCCTCGGT-TCGGCTG-GGGCTTAGACAT-
128 GCAACCCTCAGTCTC-GATGCGATCTTAGAC-TG
** * * * * ** *
34037467 GGAATGAACTCCCAATACCTAAGCCAACCCATGAAACGGGTGTGCGGGCGCTCAGTCGATCGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGATCGAAG
* * ** * * ** * * **
34037532 AGGCAGAATGCGTAAG-TCGAGGA-TCGGCCTGGTCCCTCTTGCGTGCTACCGATCCTACTGTCG
66 AGGCAGAATGCGCAAGCT-GGGGACT-GGCCCAGTCCCCCTTGCATGCTGTCAATCCTGCTACCG
** *
34037595 CAACCCTTGGTC-CGATCCGATCTTAGACTG
129 CAACCCTCAGTCTCGATGCGATCTTAGACTG
34037625 GGAATGAACTCCGTATGC
1 GGAATGAACTCCGTATGC
34037643 TTAGACTAGG
Statistics
Matches: 506, Mismatches: 124, Indels: 44
0.75 0.18 0.07
Matches are distributed among these distances:
157 14 0.03
158 253 0.50
159 227 0.45
160 12 0.02
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (159 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGATCGAAG
AGGCAGAATGCGCAAGCTGGGGACTGGCCCAGTCCCCCTTGCATGCTGTCAATCCTGCTACCGCA
ACCCTCAGTCTCGATGCGATCTTAGACTG
Found at i:34037408 original size:317 final size:317
Alignment explanation
Indices: 34036824--34037640 Score: 930
Period size: 317 Copynumber: 2.6 Consensus size: 317
34036814 ACTCTGTATC
* * *
34036824 CTTATACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGATACGAGCGTGCAGGCGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGT
* * * * * **
34036889 CGATCGGAGAGGCAGAATGTGCAAGCTAGGGACCGACCC-AGTCCCCCCAGCATGCTGTCGATCC
66 CGATCGGAGAGGCAGAATGCGCAAGTTGGGGACTGGCCCGA-TCCCCCTTGCATGCTGTCGATCC
* * *
34036953 TGCTACCAG-AACCCTCAGT-TCGGTCCGATCTTAGACTGGGAATGAACT-TCGTATGCCTAAGT
130 TGCTACC-GCAACCCTCGGTCT-GATCCGATCTTAGACTGGGAATGAACTCT-GTATACCTAAGT
* * * * * * * * *
34037015 CAACCCACGAAATGAGCGTATGGGCGCTGAGCCGGTCGAAAAGGCATAATGTGCAAGCTGGGGAT
192 CAACCCACGAAACGAGCGTACGGGAGCTAAGCCGATCGAAAAGGCATAATGCGCAAGCCGAGAAT
* * * * ** **
34037080 CGGCTCAGTCCCCCTCTGCGTGCTT-TCAGTCCCGCTACCACAA-CC-CTTTCTCTGGATGGGG
257 CGACCCAGTCCCCCTCCGCGTG-TTACCAGTCCAACTACCACAAGCCTCGGT-TC-GGATGGGG
* * * * **
34037141 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGTGGGTGCTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGT
* *
34037206 CGATCGGAGAGGCAGAATGCGCAAGTTGGGGACTGGCCCGATCCCCCTTGCCTGCTGTCAATCCT
66 CGATCGGAGAGGCAGAATGCGCAAGTTGGGGACTGGCCCGATCCCCCTTGCATGCTGTCGATCCT
* *
34037271 GCTACCGCAACCCTCGGTCTGATGCAATCTTAGACTGGGAATGAACTCTGTATACCTAAGTCAAC
131 GCTACCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCTGTATACCTAAGTCAAC
* *
34037336 CCACGAAACGAGCGTGCGGGAGCTAAGCCGATCGAAGAGGCATAATGCGCAAGCCGAGAATCGAC
196 CCACGAAACGAGCGTACGGGAGCTAAGCCGATCGAAAAGGCATAATGCGCAAGCCGAGAATCGAC
* *
34037401 CCAGTCCCCCTCCGCGTGTTACCAGTCCAACTGCCACAAGCCTCGGTTCGGCTGGGG
261 CCAGTCCCCCTCCGCGTGTTACCAGTCCAACTACCACAAGCCTCGGTTCGGATGGGG
** * * *
34037458 CTTAGACATGGAATGAACTCCCAATACCTAAGCCAACCCATGAAACGGGTGTGCGGGCGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGT
* * * * * * * **
34037523 CGATCGGAGAGGCAGAATGCGTAAGTCGAGGA-TCGGCCTGGTCCCTCTTGCGTGCTACCGATCC
66 CGATCGGAGAGGCAGAATGCGCAAGTTGGGGACT-GGCCCGATCCCCCTTGCATGCTGTCGATCC
* ** * * *
34037587 TACTGTCGCAACCCTTGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTAT
130 TGCTACCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCTGTAT
34037641 GCTTAGACTA
Statistics
Matches: 419, Mismatches: 73, Indels: 16
0.82 0.14 0.03
Matches are distributed among these distances:
316 4 0.01
317 406 0.97
318 7 0.02
319 2 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (317 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGT
CGATCGGAGAGGCAGAATGCGCAAGTTGGGGACTGGCCCGATCCCCCTTGCATGCTGTCGATCCT
GCTACCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCTGTATACCTAAGTCAAC
CCACGAAACGAGCGTACGGGAGCTAAGCCGATCGAAAAGGCATAATGCGCAAGCCGAGAATCGAC
CCAGTCCCCCTCCGCGTGTTACCAGTCCAACTACCACAAGCCTCGGTTCGGATGGGG
Found at i:34037645 original size:26 final size:26
Alignment explanation
Indices: 34037616--34037668 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
34037606 CCGATCCGAT
*
34037616 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATAAACTCCGTATG
*
34037642 CTTAGACTAGGGATAAACTCTGTATG
1 CTTAGACTAGGGATAAACTCCGTATG
34037668 C
1 C
34037669 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGGATAAACTCCGTATG
Found at i:34039463 original size:26 final size:26
Alignment explanation
Indices: 34039413--34039465 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
34039403 CTGGTCTGAT
*
34039413 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACACTGTATG
*
34039439 CTTAGACTGGGGATGAACAAC-GTATG
1 CTTAGACTGGGAATGAAC-ACTGTATG
34039465 C
1 C
34039466 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACTGTATG
Found at i:34040103 original size:26 final size:26
Alignment explanation
Indices: 34040065--34040117 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34040055 GGCTAAAAAT
*
34040065 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
34040091 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
34040117 C
1 C
34040118 CTAACCAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:34040483 original size:122 final size:122
Alignment explanation
Indices: 34040264--34040483 Score: 262
Period size: 122 Copynumber: 1.8 Consensus size: 122
34040254 ACTAGGAATG
* * * ** * * *
34040264 AACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTGCGGGCGTTGAGCCGATCAAAGAGGCAT
1 AACTCCCTATGCATAAGCCAACCCATGAAAAGAGCGTGCGGGCACTCAGCCGACCAAAGAGGCAG
* * * ***
34040329 AATGCGTAAGCCAGGGATCGGCCCGGTGCCCCTTTGCATGCTGTCGATCCCGCTGCC
66 AATACGCAAGCCAGGGATCGACCCGACCCCCCTTTGCATGCTGTCGATCCCGCTGCC
* **
34040386 AACTCCCTATGCCTAAGCCAACCCATGAAATAG-GCGTGCGGGCACTCAGCCGACCGGAGAGGCA
1 AACTCCCTATGCATAAGCCAACCCATGAAA-AGAGCGTGCGGGCACTCAGCCGACCAAAGAGGCA
*
34040450 GAATACGCAAGCCGGGGATCGACCCGACCCCCCT
65 GAATACGCAAGCCAGGGATCGACCCGACCCCCCT
34040484 GTGTGTTGCC
Statistics
Matches: 79, Mismatches: 18, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
122 78 0.99
123 1 0.01
ACGTcount: A:0.25, C:0.32, G:0.28, T:0.15
Consensus pattern (122 bp):
AACTCCCTATGCATAAGCCAACCCATGAAAAGAGCGTGCGGGCACTCAGCCGACCAAAGAGGCAG
AATACGCAAGCCAGGGATCGACCCGACCCCCCTTTGCATGCTGTCGATCCCGCTGCC
Found at i:34040906 original size:26 final size:26
Alignment explanation
Indices: 34040870--34040922 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34040860 TCCGATCGAT
*
34040870 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
34040896 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
34040922 C
1 C
34040923 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34042000 original size:16 final size:16
Alignment explanation
Indices: 34041979--34042010 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
34041969 AACCTAGGAA
*
34041979 ACAGGCGTGCGGGCGC
1 ACAGGCGTGCGAGCGC
34041995 ACAGGCGTGCGAGCGC
1 ACAGGCGTGCGAGCGC
34042011 TCAACCGACC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.16, C:0.31, G:0.47, T:0.06
Consensus pattern (16 bp):
ACAGGCGTGCGAGCGC
Found at i:34043040 original size:24 final size:21
Alignment explanation
Indices: 34043008--34043056 Score: 73
Period size: 21 Copynumber: 2.3 Consensus size: 21
34042998 ATCCCGCTGC
34043008 CGGTCCTG-CTGCCACAACCCT
1 CGGTCC-GACTGCCACAACCCT
*
34043029 TGGTCCGACTGCCACAACCCT
1 CGGTCCGACTGCCACAACCCT
34043050 CGGTCCG
1 CGGTCCG
34043057 GCTGGGGATT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 1 0.04
21 24 0.96
ACGTcount: A:0.14, C:0.45, G:0.22, T:0.18
Consensus pattern (21 bp):
CGGTCCGACTGCCACAACCCT
Found at i:34043949 original size:25 final size:26
Alignment explanation
Indices: 34043921--34043972 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
34043911 CCGGTCCGAT
*
34043921 CTTAGAC-TGGAATGAACTCCGTATG
1 CTTAGACATGGAATAAACTCCGTATG
*
34043946 CTTAGACATGGAATAAACTCTGTATG
1 CTTAGACATGGAATAAACTCCGTATG
34043972 C
1 C
34043973 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (26 bp):
CTTAGACATGGAATAAACTCCGTATG
Found at i:34044288 original size:159 final size:158
Alignment explanation
Indices: 34044113--34044407 Score: 337
Period size: 159 Copynumber: 1.9 Consensus size: 158
34044103 CTTAGACTGA
** * * *
34044113 GAATGAACTCTGTATGCATAAGTC-AACCCACAAAATGAGCG-TGCGGGCGCTCAGCC-AGTCGA
1 GAATGAACTCCCTATGCATAAG-CGAACCAACAAAACG-GCGATGCGGGCGCTCAGCCGA-CCGA
* * * * * *
34044175 AGAAGCATAATGCACAAG-CTGAAGATCGGCTCGATCCCCCTCTGCGTGCTATCGATCCCACTGC
63 AGAAGCAGAATGCACAAGCCAG-AGATAGACCCGATCCCCC-CTGCGTGCTACCGATCCCACTGC
34044239 CATAACCCTCGGCCCGACTGGGGCTTAGACAAG
126 CATAACCCTCGGCCCGACTGGGGCTTAGACAAG
* * * *
34044272 GAATGAACTCCCTATGCCTAAGCGAACCAACAAAACGGGGATGCGGGTGCTCAGCCGACCGGAGA
1 GAATGAACTCCCTATGCATAAGCGAACCAACAAAACGGCGATGCGGGCGCTCAGCCGACCGAAGA
* * * * *
34044337 GGCAGAATGCACAAGCCAGGGATAGACCCGATCCCCCCTGCGTGCTGCCGATCCTACTGCCGTAA
66 AGCAGAATGCACAAGCCAGAGATAGACCCGATCCCCCCTGCGTGCTACCGATCCCACTGCCATAA
34044402 CCCTCG
131 CCCTCG
34044408 ATCTGGTCTG
Statistics
Matches: 112, Mismatches: 20, Indels: 9
0.79 0.14 0.06
Matches are distributed among these distances:
158 33 0.29
159 76 0.68
160 3 0.03
ACGTcount: A:0.26, C:0.32, G:0.26, T:0.16
Consensus pattern (158 bp):
GAATGAACTCCCTATGCATAAGCGAACCAACAAAACGGCGATGCGGGCGCTCAGCCGACCGAAGA
AGCAGAATGCACAAGCCAGAGATAGACCCGATCCCCCCTGCGTGCTACCGATCCCACTGCCATAA
CCCTCGGCCCGACTGGGGCTTAGACAAG
Found at i:34044716 original size:12 final size:12
Alignment explanation
Indices: 34044699--34044727 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
34044689 CCCCCCTGCA
34044699 TGCTGCTGGTCC
1 TGCTGCTGGTCC
34044711 TGCTGCTGGTCC
1 TGCTGCTGGTCC
34044723 TGCTG
1 TGCTG
34044728 TCGCTACCCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.00, C:0.31, G:0.34, T:0.34
Consensus pattern (12 bp):
TGCTGCTGGTCC
Found at i:34045512 original size:26 final size:26
Alignment explanation
Indices: 34045474--34045526 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34045464 GGCTCAAAAT
34045474 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
34045500 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
34045526 C
1 C
34045527 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:34046756 original size:158 final size:156
Alignment explanation
Indices: 34046204--34046777 Score: 478
Period size: 159 Copynumber: 3.6 Consensus size: 156
34046194 ACTTCGTATG
* * ** * * *
34046204 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACAAGCATACGGGCGCTTAGC
1 CTTAGAC-TGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAGGAGCGTACGGGCACTCAGC
* * ** ** * **
34046269 CGGTCGGAGAGGCAGAATGCACAAGCTAGGGATCGG-CCCAGTCCCCCCCTGCGTGCTGTCGATC
65 CGATCGAAGAGGCA-AATGTGCAAGCCGGGGATCGGACCGA-T-CCCCCCTGCGTGCTACCGATC
* * * * **
34046333 TTGCTACTATAACCC-TCAGTCTGATCCAAT
127 TTGCTGCCACAACCCTTGA-TCTGATCTGAT
* * * * * * *
34046363 CTTAGACTGGGAATGAACTCCGTATACATAAGTCAACTCATGAAACGAGCGTGCGGGCACTGAGC
1 CTTAGACT-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAGGAGCGTACGGGCACTCAGC
* * * *
34046428 CGATCGAAGAGGCATAATGTGCAAGCTGGGGATCGGGCCGATCACCATCC-GCGTGCTACCGGTC
65 CGATCGAAGAGGCA-AATGTGCAAGCCGGGGATCGGACCGATC-CC-CCCTGCGTGCTACCGATC
** * * * * **
34046492 CCGCTGCCACAATCCTCGATTTG-GCTGGGG
127 TTGCTGCCACAACCCTTGATCTGATCT-GAT
* * * *
34046522 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGG-G-GGAGCGGGCGCTCA
1 CTTAGAC-TGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA-GGAGCGTA-CGGGCACTCA
* *
34046585 GCCGATCGGAGAGGCAGAATGTGCAAACCGGGGATC-GACTCGATCCCCCCTGCGTGCTACCGAT
63 GCCGATCGAAGAGGCA-AATGTGCAAGCCGGGGATCGGAC-CGATCCCCCCTGCGTGCTACCGAT
34046649 CTTGCTGCCACAACCCTTGATCTGATCTGAT
126 CTTGCTGCCACAACCCTTGATCTGATCTGAT
* *
34046680 CTTAGACTGAGAATGAACTCTGTATGCCTAAGTCAACCCACGAAAGGAGCGTACGGGCACTCAAC
1 CTTAGACTG-GAATGAACTCCGTATGCCTAAGTCAACCCACGAAAGGAGCGTACGGGCACTCAGC
* * *
34046745 CGACCAAAGAGGCAAGATGCGCAAGCCGGGGAT
65 CGATCGAAGAGGCAA-ATGTGCAAGCCGGGGAT
34046778 TGAACTGGTG
Statistics
Matches: 326, Mismatches: 73, Indels: 33
0.75 0.17 0.08
Matches are distributed among these distances:
157 7 0.02
158 116 0.36
159 195 0.60
160 8 0.02
ACGTcount: A:0.26, C:0.29, G:0.27, T:0.18
Consensus pattern (156 bp):
CTTAGACTGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAGGAGCGTACGGGCACTCAGCC
GATCGAAGAGGCAAATGTGCAAGCCGGGGATCGGACCGATCCCCCCTGCGTGCTACCGATCTTGC
TGCCACAACCCTTGATCTGATCTGAT
Found at i:34047416 original size:26 final size:26
Alignment explanation
Indices: 34047387--34047439 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34047377 GACTCAAAAT
34047387 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
34047413 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCCGTATG
34047439 C
1 C
34047440 CTAAACCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:34048428 original size:159 final size:159
Alignment explanation
Indices: 34048135--34048433 Score: 343
Period size: 159 Copynumber: 1.9 Consensus size: 159
34048125 GCTTAGACAT
* *
34048135 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCATACGGGCGCTTAGCCGGTCGAAG
1 GGAATGAACTCCGTATGCATAAGCCAACCCACGAAACAAGCATACGGGCGCTTAGCCGGCCGAAG
* * * * * ** * *
34048200 AGACAGAATGCGCAAGCTGGGGATCGGCCTAGTCCCCCCTTGCGTGCTATCGATCCTGCTACTAT
66 AGACAGAATGCGCAAGCCGAGGATCGCCCGAGTCCCCCCTTGCGTGCTACCGATCCCACTACCAC
34048265 AACCCTTGATCTGATTCAATCTTACACTA
131 AACCCTTGATCTGATTCAATCTTACACTA
* * ** * *
34048294 GGAATGAACTCCGTATGCATAAGTCAACTCACGAAATGAGCGTACGGGTG-TTGAGCCGGCCGAA
1 GGAATGAACTCCGTATGCATAAGCCAACCCACGAAACAAGCATACGGGCGCTT-AGCCGGCCGAA
* * * * * *
34048358 GAGGCATAATGCGCAATCCGAGGATCGACCCGA-T-CCCCCTCTGCGTGCTGCCGGTCCCACTGC
65 GAGACAGAATGCGCAAGCCGAGGATCG-CCCGAGTCCCCCCT-TGCGTGCTACCGATCCCACTAC
34048421 CACAACCCTTGAT
128 CACAACCCTTGAT
34048434 TCGGCTGGGG
Statistics
Matches: 114, Mismatches: 23, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
158 8 0.07
159 103 0.90
160 3 0.03
ACGTcount: A:0.25, C:0.30, G:0.24, T:0.20
Consensus pattern (159 bp):
GGAATGAACTCCGTATGCATAAGCCAACCCACGAAACAAGCATACGGGCGCTTAGCCGGCCGAAG
AGACAGAATGCGCAAGCCGAGGATCGCCCGAGTCCCCCCTTGCGTGCTACCGATCCCACTACCAC
AACCCTTGATCTGATTCAATCTTACACTA
Found at i:34048920 original size:26 final size:26
Alignment explanation
Indices: 34048879--34048931 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
34048869 CCGATCTGAT
34048879 CTTAGACTGGAAATGAACT-TCGTATG
1 CTTAGACTGGAAATGAACTCT-GTATG
**
34048905 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGAAATGAACTCTGTATG
34048931 C
1 C
34048932 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCTGTATG
Found at i:34050080 original size:26 final size:26
Alignment explanation
Indices: 34050051--34050103 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34050041 CCAATCCAAT
34050051 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
34050077 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
34050103 C
1 C
34050104 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:34051293 original size:158 final size:158
Alignment explanation
Indices: 34051003--34051383 Score: 410
Period size: 158 Copynumber: 2.4 Consensus size: 158
34050993 TTCGTATGCA
** * * ** * *
34051003 TAGACATGGAATGAACTTTGTATGCCTAAGCCAGCCCATGAAACGAGCATGCAAGCGTTGAGCCG
1 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCG
* * * * * * * *
34051068 GTCGGAGAGGCATAATGCGCAAGTCGGGGATCGATCGGTCCCCCTCTACGTGTTATGGGTCCCAC
66 GCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGATCGATCCCCCTCTACGTGCTATCGATCCCAC
* *
34051133 TACCATAACCCTTGGTCCAG-CTAGGGT-T
131 TACCATAACCCTCGGTCCAGTCT--GATCT
* * * * *
34051161 TAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGTGGGTGCTCAGCCG
1 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCG
* * * *
34051226 GCCGGAGAGGTAGAATGCGCAAGCCGAGGATCGGCTCGATCCCCC-CTGCGTGCTATCGATCCTA
66 GCCGGAGAGGCAGAATGCGCAAGCCGAGGATC-GATCGATCCCCCTCTACGTGCTATCGATCCCA
* *
34051290 CTACCATAACCCTCGGTTCGGTCTGATCT
130 CTACCATAACCCTCGGTCCAGTCTGATCT
* * *
34051319 TAGAC-TGAGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGTGTGCGGGCGCTCAGCC
1 TAGACATG-GAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCC
34051383 G
65 G
34051384 ACTAGAGGGG
Statistics
Matches: 182, Mismatches: 37, Indels: 8
0.80 0.16 0.04
Matches are distributed among these distances:
157 4 0.02
158 166 0.91
159 12 0.07
ACGTcount: A:0.24, C:0.28, G:0.28, T:0.20
Consensus pattern (158 bp):
TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCG
GCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGATCGATCCCCCTCTACGTGCTATCGATCCCAC
TACCATAACCCTCGGTCCAGTCTGATCT
Found at i:34052465 original size:158 final size:157
Alignment explanation
Indices: 34052038--34052467 Score: 397
Period size: 158 Copynumber: 2.7 Consensus size: 157
34052028 AACTCCGTAG
* * *
34052038 GCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCATGAAACGAGCGAGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGCGCTCAG
* * * * * * * *
34052103 CCAG-CTGGAGA-GCTAGAATGCT-TAAGCCGAGGAACGGCCTGGTCCCCCCAGCCTGCTATCGA
66 CCGGTC-GGAGAGGC-AAAATG-TGAAAGCCGGGGATCGGCCCGGTCCCCCCAGCATCCTATCGA
* * *
34052165 TCCTGCTGCCACAACCCTCGGTTCGATCCAA
128 TCCCGCTGCCACAACCCTCAGTCCGA-CCAA
* * * * * * * * *
34052196 TCTTAGTC-TAGGAATTAACTTCGTATGCATAAGTCAACCCACGAAACAAGCGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGCGCTCA
* * * * * ** *
34052260 GCCGGTCGAAGAGGCATAATGCGAAAGTCGGGGATCGACCCAATCCCCCTCTA-CATCCTATCGG
65 GCCGGTCGGAGAGGCAAAATGTGAAAGCCGGGGATCGGCCCGGTCCCCC-C-AGCATCCTATCGA
*
34052324 TCCCGCTGCCACAACCCTCAGTCCGA-CAGG
128 TCCCGCTGCCACAACCCTCAGTCCGACCA-A
* **
34052354 GGTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAC-AGTCGTGCGGGCATTCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAAG-CGTGCGGGCGCTCA
* *
34052418 GCTGGTCGGAGAGGCAAAATGTGCAAGCCGGGGATCGGCCCGGTCCCCCC
65 GCCGGTCGGAGAGGCAAAATGTGAAAGCCGGGGATCGGCCCGGTCCCCCC
34052468 TGCGTGCTGT
Statistics
Matches: 212, Mismatches: 51, Indels: 19
0.75 0.18 0.07
Matches are distributed among these distances:
157 6 0.03
158 169 0.80
159 36 0.17
160 1 0.00
ACGTcount: A:0.25, C:0.31, G:0.26, T:0.18
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGCGCTCAG
CCGGTCGGAGAGGCAAAATGTGAAAGCCGGGGATCGGCCCGGTCCCCCCAGCATCCTATCGATCC
CGCTGCCACAACCCTCAGTCCGACCAA
Found at i:34052714 original size:184 final size:184
Alignment explanation
Indices: 34052356--34052716 Score: 424
Period size: 184 Copynumber: 2.0 Consensus size: 184
34052346 CCGACAGGGG
* *
34052356 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAGTCGTGCGGGCATTCAGCT
1 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAGTCGTGCGGGCATTCAACC
* ** ** * * * *
34052421 GGTCGGAGAGGCAAAATGTGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCAATCCGG
66 GGTCGGACAGGCAAAATGCACAAGCCAAGGATCGACCCGATCCCCCCTGCATGCTGTCAATCCGA
** * *
34052486 CTGCTGCAACCCTCGGTCCAATCTGATCATAGACTAGGAATGAACTCTGTATGC
131 CTGCCACAACCCTCAGTCCAATCCGATCATAGACTAGGAATGAACTCTGTATGC
* *
34052540 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAG-CGTGCGGG-AGTTCAA
1 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAA-CAGTCGTGCGGGCA-TTCAA
* * * *
34052603 CCGGTCGGACAGGCAGAATGCACAAGCTAAGGATCGACCCGATCCCCCTTGCATGCTGTCGATCC
64 CCGGTCGGACAGGCAAAATGCACAAGCCAAGGATCGACCCGATCCCCCCTGCATGCTGTCAATCC
* * * **
34052668 TATTGCCACAACCCTCAGTTCGGTCCGAT-ATTAGACT-GGAAATGAACTC
129 GACTGCCACAACCCTCAGTCCAATCCGATCA-TAGACTAGG-AATGAACTC
34052717 CATATGCCTA
Statistics
Matches: 147, Mismatches: 26, Indels: 8
0.81 0.14 0.04
Matches are distributed among these distances:
183 4 0.03
184 141 0.96
185 2 0.01
ACGTcount: A:0.26, C:0.28, G:0.25, T:0.21
Consensus pattern (184 bp):
TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAGTCGTGCGGGCATTCAACC
GGTCGGACAGGCAAAATGCACAAGCCAAGGATCGACCCGATCCCCCCTGCATGCTGTCAATCCGA
CTGCCACAACCCTCAGTCCAATCCGATCATAGACTAGGAATGAACTCTGTATGC
Found at i:34052908 original size:159 final size:157
Alignment explanation
Indices: 34052538--34053033 Score: 453
Period size: 158 Copynumber: 3.1 Consensus size: 157
34052528 AACTCTGTAT
* * * *
34052538 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGAGTTCAA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
* * *** *
34052603 CCGGTCGGACAGGCAGAATGCACAAGCTAAGGATCGACCCGATCCCCCTTGCATGCTGTCGATCC
66 CC-GTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCTTGCATGCTGCCGATCC
* *
34052668 TATTGCCACAACCCTCAGTTCGGTCCGA
130 TATTGCCACAACCCTCAGTCCGCTCCGA
** * * *
34052696 TATTAGAC-TGGAAATGAACTCCATATGCCTAAGTCAACCCATTAAATGAGCGTGCGGGCGCTGA
1 GCTTAGACATGG-AATGAACTCCATATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCA
* * ***
34052760 GCCGATCGGAGAGGCATAATGCGCAAGCCGGGGATCAACCCGATCCCCCTCTTTGTGCTGCCCG-
65 GCCG-TCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCT-TGCATGCTG-CCGA
* * * * *
34052824 T-CTCGTTGCCACAACTCTCGGTCCGACT-GGG
127 TCCT-ATTGCCACAACCCTCAGTCCG-CTCCGA
* * * * *
34052855 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGTGGCCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
* * * * * ** ** *
34052920 CCTGCCGGAGAGGCAGAATGCGTAAGCCGGGGATCGATCCGGTCCCCCTTACGCGCTATCGATTC
66 CC-GTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCTTGCATGCTGCCGATCC
** * *
34052985 TGCTGCCACAACCCTCGGTCCGATCCGA
130 TATTGCCACAACCCTCAGTCCGCTCCGA
*
34053013 TCTTAGAC-TGGGAATGAACTC
1 GCTTAGACAT-GGAATGAACTC
34053034 TGTATGCTTA
Statistics
Matches: 272, Mismatches: 54, Indels: 24
0.78 0.15 0.07
Matches are distributed among these distances:
157 8 0.03
158 138 0.51
159 119 0.44
160 7 0.03
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
CCGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCTTGCATGCTGCCGATCCT
ATTGCCACAACCCTCAGTCCGCTCCGA
Found at i:34053050 original size:26 final size:26
Alignment explanation
Indices: 34053014--34053066 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34053004 CCGATCCGAT
*
34053014 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
34053040 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
34053066 C
1 C
34053067 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34053127 original size:501 final size:498
Alignment explanation
Indices: 34052011--34053140 Score: 1339
Period size: 500 Copynumber: 2.3 Consensus size: 498
34052001 GTGGCTCAAA
* * *
34052011 ATCTTAGACTGGGAATGAACTCCGTAGGCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAAC
1 ATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
* * * ** * * *
34052076 CCATGAAACGAGCGAGCGGGCGCTCAGCCAGCTGGAGAGCTAGAATGCTTAAGCCGAGGAACGGC
66 CCATGAAACGAGCGTGCGGGAGCTCAGCCAGCCGGAG-GC-AGAATGCACAAGCTGAGGATCGAC
* * * * * * *
34052141 CTGGTCCCCCCAGCCTGCTATCGATCCTGCTGCCACAACCCTCGGTTCGATCCAATCTTAGTCTA
129 CCGATCCCCCCAGCATGCTATCGATCCTACTGCCACAACCCTCAGTTCGATCCAATATTAGACTA
* * * *
34052206 GGAATTAACTTCGTATGCATAAGTCAACCCACGAAACAAGCGTGCGGGCGCTGAGCCGGTCGAAG
194 GGAATGAACTCCATATGCATAAGTCAACCCACGAAACAAGCGTGCGGGCGCTGAGCCGATCGAAG
* * * *
34052271 AGGCATAATGCGAAAGTCGGGGATCGACCCAATCCCCCTCTACATCCTATCGGTCCCGCTGCCAC
259 AGGCATAATGCGAAAGCCGGGGATCAACCCAATCCCCCTCTACATCCTACCCGTCCCGCTGCCAC
34052336 AACCCTCAGTCCGACAGGGGTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAC
324 AACCCTCAGTCCGACAGGGGTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAC
* * * * * *
34052401 AGTCGTGCGGGCATTCAGCTGGTCGGAGAGGCAAAATGTGCAAGCCGGGGATCGGCCCGGTCCCC
389 AGGCGTGCGGCCACTCAGCTGGCCGGAGAGGCAAAATGCGCAAGCCGGGGATCGACCCGGTCCCC
* * * ** *
34052466 CCTGCGTGCTGTCAATCCGGCTGCTGCAACCCTCGGTCCAATCTG
454 CCTACGCGCTATCAATCCGGCTGCCACAACCCTCGGTCCAATCCG
* *
34052511 ATCATAGACTAGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
1 ATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * * *
34052576 CCATGAAATGAGCGTGCGGGAGTTCAACCGGTCGGACAGGCAGAATGCACAAGCTAAGGATCGAC
66 CCATGAAACGAGCGTGCGGGAGCTCAGCCAGCCGG--AGGCAGAATGCACAAGCTGAGGATCGAC
** * * * *
34052641 CCGATCCCCCTTGCATGCTGTCGATCCTATTGCCACAACCCTCAGTTCGGTCCGATATTAGACT-
129 CCGATCCCCCCAGCATGCTATCGATCCTACTGCCACAACCCTCAGTTCGATCCAATATTAGACTA
* ** ** *
34052705 GGAAATGAACTCCATATGCCTAAGTCAACCCATTAAATGAGCGTGCGGGCGCTGAGCCGATCGGA
194 GG-AATGAACTCCATATGCATAAGTCAACCCACGAAACAAGCGTGCGGGCGCTGAGCCGATCGAA
* * *** * * * *
34052770 GAGGCATAATGCGCAAGCCGGGGATCAACCCGATCCCCCTCTTTGTGCTGCCCGTCTCGTTGCCA
258 GAGGCATAATGCGAAAGCCGGGGATCAACCCAATCCCCCTCTACATCCTACCCGTCCCGCTGCCA
* * *
34052835 CAACTCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAA
323 CAACCCTCAGTCCGACAGGGG-TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAA
* * * * * *
34052900 ACGGGCGTGTGGCCGCTCAGCCT-GCCGGAGAGGCAGAATGCGTAAGCCGGGGATCGATCCGGTC
387 ACAGGCGTGCGGCCACTCAG-CTGGCCGGAGAGGCAAAATGCGCAAGCCGGGGATCGACCCGGTC
* * * * *
34052964 CCCCTTACGCGCTATCGATTCTGCTGCCACAACCCTCGGTCCGATCCG
451 CCCCCTACGCGCTATCAATCCGGCTGCCACAACCCTCGGTCCAATCCG
* *
34053012 ATCTTAGACTGGGAATGAACTCTGTATGCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAA
1 ATCTTAGACTGGGAATGAACTCTGTATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * *
34053076 CCCACGAAAGGAGCGTGCGGGTGCTCAGCCAACCAGAGGTGCAGGATGCACAAGCTGGGGATCGA
65 CCCATGAAACGAGCGTGCGGGAGCTCAGCCAGCCGGA-G-GCAGAATGCACAAGCTGAGGATCGA
34053141 ACTGGTGGTA
Statistics
Matches: 525, Mismatches: 97, Indels: 15
0.82 0.15 0.02
Matches are distributed among these distances:
499 3 0.01
500 280 0.53
501 238 0.45
502 4 0.01
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (498 bp):
ATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
CCATGAAACGAGCGTGCGGGAGCTCAGCCAGCCGGAGGCAGAATGCACAAGCTGAGGATCGACCC
GATCCCCCCAGCATGCTATCGATCCTACTGCCACAACCCTCAGTTCGATCCAATATTAGACTAGG
AATGAACTCCATATGCATAAGTCAACCCACGAAACAAGCGTGCGGGCGCTGAGCCGATCGAAGAG
GCATAATGCGAAAGCCGGGGATCAACCCAATCCCCCTCTACATCCTACCCGTCCCGCTGCCACAA
CCCTCAGTCCGACAGGGGTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAG
GCGTGCGGCCACTCAGCTGGCCGGAGAGGCAAAATGCGCAAGCCGGGGATCGACCCGGTCCCCCC
TACGCGCTATCAATCCGGCTGCCACAACCCTCGGTCCAATCCG
Found at i:34053775 original size:26 final size:26
Alignment explanation
Indices: 34053737--34053789 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34053727 GGCTCAAAAT
*
34053737 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
34053763 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
34053789 C
1 C
34053790 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34054111 original size:26 final size:26
Alignment explanation
Indices: 34054082--34054132 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
34054072 GATTTGATCA
34054082 TAGACTGGGAATGAACTCCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
* * *
34054108 TAGATTGGGGATGAACTTCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
34054133 CTAAGCCAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.16, G:0.29, T:0.29
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:34054493 original size:369 final size:368
Alignment explanation
Indices: 34053887--34054552 Score: 883
Period size: 369 Copynumber: 1.8 Consensus size: 368
34053877 TGCGTGCTAC
* *
34053887 CGGTCCCACTGCCACAAGCCTCGGTCCGGTTGGGGATTAGACATGGAATGAACTCCCTATGCCTA
1 CGGTCCCACTACCACAACCCTCGGTCCGGTTGGGGATTAGACATGGAATGAACTCCCTATGCCTA
** * * ** * * *
34053952 AGCCAACCCATTAAACAGGCGTACGGGCGTTCAGCTGGCCGGAGAGGCAGAATGCGTAAGCCGGG
66 AGCCAACCCACGAAACAGACGTACAGGCACTCAGCTGGCCGAAGAGGCAGAATGCGCAAGCCGAG
* * * ***
34054017 GATAGGCTCGGTCCCCGCTGCGTGCTATCGATCCTACTGTCGCAACCCTCAATCCGATTTGATCA
131 GATAGGCTCGGTCCCCCCTGCGTGCTACCGATCCTACTGCCGCAACCCTCAATCCGATCCAATCA
* * * * *
34054082 TAGACTGGGAATGAACTCCGTATGCTTAGATTGGGGATGAACTTCGTATGCCTAAGCCAACCCAT
196 TAGACTGGGAATGAACTCCGTATGCTTAGAATGGGAATGAACTCCATATGCCTAAGCCAACCCAC
*
34054147 GAAACGAGCGTGCAGGCGCTCAGTCGGCCAGAGAGGCCGGCCTGAGAGGCATAATGCGCAAGTAA
261 GAAACGAGCGTGCAGGCGCTCAGCCGGCCAGAGAGGCCGGCCTGAGAGGCATAATGCGCAAGTAA
34054212 AGGATCAGCCCAATCCCCCTCTACGTGCTGTCGATCACACTGT
326 AGGATCAGCCCAATCCCCCTCTACGTGCTGTCGATCACACTGT
* * *
34054255 CGGTCCTACTACCACAACCCTCGGTCCGGTTGGGGCTTAGACATGGAATGAACTCCGTATGCCTA
1 CGGTCCCACTACCACAACCCTCGGTCCGGTTGGGGATTAGACATGGAATGAACTCCCTATGCCTA
* * *
34054320 AGCCAACCCACGAAAC-GAACGTGA-AGGCACTC-GGTCGGTCGAAGAGGTAGAATGCGCAAGCC
66 AGCCAACCCACGAAACAG-ACGT-ACAGGCACTCAGCT-GGCCGAAGAGGCAGAATGCGCAAGCC
* * * **
34054382 GAGGATCGGCTTGGTCCCCCCCTGCGTGCTACCGATCCTACTGCCGCAACTCTCGGTCC-AGTCC
128 GAGGATAGGCTCGGT-CCCCCCTGCGTGCTACCGATCCTACTGCCGCAACCCTCAATCCGA-TCC
* *
34054446 AATCTTAGACTGGGAATGAACTCTGTATGCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCA
191 AATCATAGACTGGGAATGAACTCCGTATGCTTAGA-ATGGGAATGAACTCCATATGCCTAAGCCA
** * *
34054510 ACCCACGAAATTAGCGTGCGGGCGCTCAGCCGGCCGGAGAGGC
255 ACCCACGAAACGAGCGTGCAGGCGCTCAGCCGGCCAGAGAGGC
34054553 AGAATGCGCA
Statistics
Matches: 252, Mismatches: 40, Indels: 11
0.83 0.13 0.04
Matches are distributed among these distances:
367 3 0.01
368 117 0.46
369 131 0.52
370 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.19
Consensus pattern (368 bp):
CGGTCCCACTACCACAACCCTCGGTCCGGTTGGGGATTAGACATGGAATGAACTCCCTATGCCTA
AGCCAACCCACGAAACAGACGTACAGGCACTCAGCTGGCCGAAGAGGCAGAATGCGCAAGCCGAG
GATAGGCTCGGTCCCCCCTGCGTGCTACCGATCCTACTGCCGCAACCCTCAATCCGATCCAATCA
TAGACTGGGAATGAACTCCGTATGCTTAGAATGGGAATGAACTCCATATGCCTAAGCCAACCCAC
GAAACGAGCGTGCAGGCGCTCAGCCGGCCAGAGAGGCCGGCCTGAGAGGCATAATGCGCAAGTAA
AGGATCAGCCCAATCCCCCTCTACGTGCTGTCGATCACACTGT
Found at i:34054500 original size:26 final size:26
Alignment explanation
Indices: 34054449--34054501 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
34054439 CCAGTCCAAT
**
34054449 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
34054475 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
34054501 C
1 C
34054502 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:34054503 original size:185 final size:184
Alignment explanation
Indices: 34054289--34054652 Score: 503
Period size: 185 Copynumber: 2.0 Consensus size: 184
34054279 TCCGGTTGGG
* *
34054289 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTGAAGGCACTCGG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAACGTGAAGGCACTCAG
* * * ***
34054354 TCGGTCGAAGAGGTAGAATGCGCAAGCCGAGGATCGGCTTGGTCCCCCCCTGCGTGCTACCGATC
66 CCGGCCGAAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCAGT-CCCCCCTGCGTGCTACCGATC
* *
34054419 CTACTGCCGCAACTCTCGGTCCAGTCCAATCTTAGACTGGGAATGAACTCTGTAT
130 CTACTGCCGCAACCCTCGGTCCAGTCCAATCTTAAACTGGGAATGAACTCTGTAT
** * ** *
34054474 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATTAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAACGTGAAGGCACTCAG
* * * *
34054539 CCGGCCGGAGAGGCAGAATGCGCAAGTCGAGGATCGGCCCAGTCCCCCCTGGGTGCTATCGATCC
66 CCGGCCGAAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCAGTCCCCCCTGCGTGCTACCGATCC
* * * *
34054604 TGCTGTCGCAACCCTCTGTCCAGTCCGATCTTAAACTGGGAATGAACTC
131 TACTGCCGCAACCCTCGGTCCAGTCCAATCTTAAACTGGGAATGAACTC
34054653 CATATGCCTA
Statistics
Matches: 155, Mismatches: 24, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
184 63 0.41
185 92 0.59
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAACGTGAAGGCACTCAG
CCGGCCGAAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCAGTCCCCCCTGCGTGCTACCGATCC
TACTGCCGCAACCCTCGGTCCAGTCCAATCTTAAACTGGGAATGAACTCTGTAT
Found at i:34054831 original size:159 final size:158
Alignment explanation
Indices: 34054474--34054846 Score: 383
Period size: 158 Copynumber: 2.4 Consensus size: 158
34054464 AACTCTGTAT
** *
34054474 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATTAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGAGCTCAG
* * ** * **
34054539 CCGGCCGGAGAGGCAGAATGCGCAAGTCGAGGATCGGCCCAGTCCCCCCTGGGTGCTATCGATCC
66 CCGGCCAGAGAGGCAGAATGCACAAACCGAGGATCGACCCAGTCCCCCCTGCATGCTATCGATCC
* * *
34054604 TGCTGTCGCAACCCTCTGTCCAGTCCGA
131 CGCTGCCACAACCCTCTGTCCAGTCCGA
* * * * *
34054632 TCTTAAAC-TGGGAATGAACTCCATATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGAGCTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGAGCTCA
** * * * * * *
34054696 GTTGGTCAGAGAGGCATAATGCACAAACCGGGGATCGACCCGGTCCCCCTCTGCATGCTGTCGGT
65 GCCGGCCAGAGAGGCAGAATGCACAAACCGAGGATCGACCCAGTCCCCC-CTGCATGCTATCGAT
* * * *
34054761 CCCGCTGCCACAACCCT-TGGT-CTGGCTGGG
129 CCCGCTGCCACAACCCTCT-GTCCAGTC-CGA
* * **
34054791 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACAAGCGTGCG
34054847 AGCGCTCAAC
Statistics
Matches: 172, Mismatches: 38, Indels: 9
0.79 0.17 0.04
Matches are distributed among these distances:
157 1 0.01
158 96 0.56
159 74 0.43
160 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGAGCTCAG
CCGGCCAGAGAGGCAGAATGCACAAACCGAGGATCGACCCAGTCCCCCCTGCATGCTATCGATCC
CGCTGCCACAACCCTCTGTCCAGTCCGA
Found at i:34055006 original size:26 final size:26
Alignment explanation
Indices: 34054955--34055007 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
34054945 CCGATCTGAT
**
34054955 CTTAGACTGGGAATGAACTATGTATG
1 CTTAGACTGGGAATGAACTACATATG
* *
34054981 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTACATATG
34055007 C
1 C
34055008 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACATATG
Found at i:34056729 original size:26 final size:26
Alignment explanation
Indices: 34056688--34056740 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34056678 TCGATCCGAT
*
34056688 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCGGTATG
34056714 CTTAGACTAGGG-ATGAACTCGGTATG
1 CTTAGACT-GGGAATGAACTCGGTATG
34056740 C
1 C
34056741 CTAAATCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCGGTATG
Found at i:34058587 original size:26 final size:26
Alignment explanation
Indices: 34058558--34058610 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
34058548 CCAGTTCGAT
34058558 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* * *
34058584 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
34058610 C
1 C
34058611 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:34059318 original size:26 final size:26
Alignment explanation
Indices: 34059278--34059330 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
34059268 GGCTCAAAAT
34059278 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
34059304 CTTAGACATGG-AATGAACTCCGTATG
1 CTTAGAC-TGGAAATGAACTCCGTATG
34059330 C
1 C
34059331 CTAAGCTAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:34059605 original size:159 final size:159
Alignment explanation
Indices: 34059380--34059745 Score: 361
Period size: 159 Copynumber: 2.3 Consensus size: 159
34059370 GGTCGGAGAG
* * ** * **
34059380 GCAAAATGA-GCAAGCCGGGGATCGACCCGAT-CCCCTCCTACGTACTGTTGATCCTACTACTGC
1 GCAAAAT-ACGCAAGCCGGGGATCGACCCGATCCCCCT-CTGCGTGCTGCCGATCCCACTACCAC
* * * *
34059443 AACCCT-AGGTTTGG-TCCGATCTTACACGA-GGAATGAACTCCGTATGCATAAGTCAACCCACG
64 AACCCTCA-GTTTGGCT-CGAGCTTACAC-ATAGAATGAACTCCCTATGCATAAGCCAACCCACG
* *
34059505 AAAC-GAGCGTGCGGGC-ATCGAGCCGGCCAAAGAA
126 AAACAG-GAGTGCGGGCGATC-AGCCAGCCAAAGAA
* * *
34059539 GCATAATACGCAAGACGGGGATCGACCCGGTCCCCCTCTGCGTGCTGCCGATCCCACTACCACAA
1 GCAAAATACGCAAGCCGGGGATCGACCCGATCCCCCTCTGCGTGCTGCCGATCCCACTACCACAA
* * * *
34059604 CCCTCAGTTTGGCTGGGGCTTAGACATAGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACA
66 CCCTCAGTTTGGCTCGAGCTTACACATAGAATGAACTCCCTATGCATAAGCCAACCCACGAAACA
* * *
34059669 GGAGTGCGGGCGCTCAGCCAGCCAGAGAG
131 GGAGTGCGGGCGATCAGCCAGCCAAAGAA
* * ** *
34059698 GCAAAATGCGCAAGCCAGGGATCGACTTGATCCCCC-CCGCGTGCTGCC
1 GCAAAATACGCAAGCCGGGGATCGACCCGATCCCCCTCTGCGTGCTGCC
34059746 TGCCGTAACC
Statistics
Matches: 169, Mismatches: 31, Indels: 15
0.79 0.14 0.07
Matches are distributed among these distances:
158 13 0.08
159 146 0.86
160 10 0.06
ACGTcount: A:0.26, C:0.32, G:0.25, T:0.17
Consensus pattern (159 bp):
GCAAAATACGCAAGCCGGGGATCGACCCGATCCCCCTCTGCGTGCTGCCGATCCCACTACCACAA
CCCTCAGTTTGGCTCGAGCTTACACATAGAATGAACTCCCTATGCATAAGCCAACCCACGAAACA
GGAGTGCGGGCGATCAGCCAGCCAAAGAA
Found at i:34059801 original size:26 final size:26
Alignment explanation
Indices: 34059772--34059824 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
34059762 CCGGTCCGAT
34059772 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
* * * *
34059798 CTTAGACTGGGGATTAACTCTGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
34059824 C
1 C
34059825 CTATGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:34060504 original size:26 final size:26
Alignment explanation
Indices: 34060475--34060527 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
34060465 CCGGTCCGAT
34060475 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
** * *
34060501 CTTAGGTTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
34060527 C
1 C
34060528 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34061377 original size:26 final size:26
Alignment explanation
Indices: 34061326--34061378 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
34061316 CCGATCCAAT
*
34061326 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
34061352 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
34061378 C
1 C
34061379 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:34063014 original size:26 final size:26
Alignment explanation
Indices: 34062985--34063037 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
34062975 GACTCAAAAT
*
34062985 CTTAGAC-TGGTAATGAACTCTGTATG
1 CTTAGACATGG-AATGAACTCCGTATG
*
34063011 CTTAGACATGGAGTGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
34063037 C
1 C
34063038 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:34064377 original size:26 final size:26
Alignment explanation
Indices: 34064348--34064401 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
34064338 GATCCGATCT
34064348 TAGATTGGGAATGAACTCCGTATGCC
1 TAGATTGGGAATGAACTCCGTATGCC
* *
34064374 TAGATTGGGGATGAACTTCGTATGCC
1 TAGATTGGGAATGAACTCCGTATGCC
34064400 TA
1 TA
34064402 AGTCAACCCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
TAGATTGGGAATGAACTCCGTATGCC
Found at i:34071034 original size:26 final size:26
Alignment explanation
Indices: 34070995--34071047 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34070985 GGCTCAAAAT
*
34070995 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACCCCGTATG
34071021 CTTAGACATG-GAATGAACCCCGTATG
1 CTTAGAC-TGAGAATGAACCCCGTATG
34071047 C
1 C
34071048 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACCCCGTATG
Found at i:34071528 original size:26 final size:26
Alignment explanation
Indices: 34071492--34071549 Score: 71
Period size: 26 Copynumber: 2.2 Consensus size: 26
34071482 CCGGTCCGAT
* *
34071492 CTTAGACTGGGAAAGAACTTCGTATG
1 CTTAGGCTGGGAAAGAACTCCGTATG
* *
34071518 CTTAGGCTGGGGATGAACTCCGTATG
1 CTTAGGCTGGGAAAGAACTCCGTATG
*
34071544 CCTAGG
1 CTTAGG
34071550 TCAATGCACA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.24, C:0.19, G:0.31, T:0.26
Consensus pattern (26 bp):
CTTAGGCTGGGAAAGAACTCCGTATG
Found at i:34071897 original size:26 final size:26
Alignment explanation
Indices: 34071859--34071911 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
34071849 CTGGTCTGAT
34071859 CTTAGACTGGGAATAAACTTCATATG
1 CTTAGACTGGGAATAAACTTCATATG
* *
34071885 CTTAGACAT-GGAATGAACTTCGTATG
1 CTTAGAC-TGGGAATAAACTTCATATG
34071911 C
1 C
34071912 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.17, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTTCATATG
Found at i:34073117 original size:26 final size:26
Alignment explanation
Indices: 34073079--34073131 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
34073069 GGCTCAAAAT
34073079 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
34073105 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
34073131 C
1 C
34073132 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34073434 original size:157 final size:158
Alignment explanation
Indices: 34073104--34073466 Score: 390
Period size: 157 Copynumber: 2.3 Consensus size: 158
34073094 AACTCCGTAT
* *
34073104 GCTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGAGGGCACTCAG
1 GCTTAGACTTGGAATGAACTCCATATGCATAAGCCAACCCATGAAACGAGCGT-AGGGCACTCAG
* * * * * ** * *
34073169 TTGGCCGGAGAGGTAGAATGCACAAGCTGGGGATCGGTCTGCTCCCCCACTACATGCTGTCGATC
65 TCGGCCGAAAAGGCAGAATGCACAAGCCGGGGATCGACCCGATCCCCCACTACATGCTGTCGATC
** *
34073234 TTGCTACCACAAAACTTGGTCCGGTCTGA
130 CCGCTACCACAAAACTCGGTCCGGTCTGA
* * * * *
34073263 TCATAGA-TTGGGAATGAACTCCATTTGCATAAGTCAACCCATGAAACGAGCGT-GGGCACTGAG
1 GCTTAGACTT-GGAATGAACTCCATATGCATAAGCCAACCCATGAAACGAGCGTAGGGCACTCAG
* * * *
34073326 TCGGCCGAAAAGGCATAATGCACAAGCCGGGGATCGACCCGATCCCCCTCTACGTGCTGTCGGTC
65 TCGGCCGAAAAGGCAGAATGCACAAGCCGGGGATCGACCCGATCCCCCACTACATGCTGTCGATC
* ** * *
34073391 CCGCTGCCACAACCCTCGGTCTGG-CTGGG
130 CCGCTACCACAAAACTCGGTCCGGTCT-GA
* * * *
34073420 GCTTAGACATGGAATGAACTCCCTATGCTTATGCCAACCCATGAAAC
1 GCTTAGACTTGGAATGAACTCCATATGCATAAGCCAACCCATGAAAC
34073467 AGATGTGCGG
Statistics
Matches: 165, Mismatches: 36, Indels: 8
0.79 0.17 0.04
Matches are distributed among these distances:
156 2 0.01
157 116 0.70
158 3 0.02
159 44 0.27
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.21
Consensus pattern (158 bp):
GCTTAGACTTGGAATGAACTCCATATGCATAAGCCAACCCATGAAACGAGCGTAGGGCACTCAGT
CGGCCGAAAAGGCAGAATGCACAAGCCGGGGATCGACCCGATCCCCCACTACATGCTGTCGATCC
CGCTACCACAAAACTCGGTCCGGTCTGA
Found at i:34073608 original size:26 final size:26
Alignment explanation
Indices: 34073579--34073631 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34073569 CTGGTCCGAT
*
34073579 CTTAGACTGG-GAATGAACTCTGTATG
1 CTTAGACTGGCG-ATGAACTCTATATG
34073605 CTTAGACTGGCGATGAACTCTATATG
1 CTTAGACTGGCGATGAACTCTATATG
34073631 C
1 C
34073632 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGCGATGAACTCTATATG
Found at i:34075504 original size:171 final size:171
Alignment explanation
Indices: 34075175--34075504 Score: 367
Period size: 171 Copynumber: 1.9 Consensus size: 171
34075165 AACTCCGTAT
* * * *
34075175 GCTTGGACATGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAATAAGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCTGTATACCTAAGCCAACCCATGAAACAAGCGTGCGGGCACTCAG
* * * * * * * *
34075240 CCGGCCGGAGAGGCATAATGCGTAAGCTGGGGATCAACCCGATCCCTCTCTATGTGTTGCCGATC
66 CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCAACCCGATCCCCCCCTACGTGCTGCCGATC
* * *
34075305 CCGCTGTCTACCCTGCTGCCATAACCCTCGATTCGATTGGG
131 CCGCTGTCTACCCAGCTACCACAACCCTCGATTCGATTGGG
* * * **
34075346 GCTTAGACATGGAATGAACT-TCGTATACCTAAGCCAACCTATGAAACGAGCGTGTGGGTGCTCA
1 GCTTAGACATGGAATGAACTCT-GTATACCTAAGCCAACCCATGAAACAAGCGTGCGGGCACTCA
* * * * *
34075410 GCCGACCGGAGAGGCAGAATGTGCAAGCCGGGGATCGACCTGATCCCCCCCTGCGTGCTGTCGAT
65 GCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCAACCCGATCCCCCCCTACGTGCTGCCGAT
* ** *
34075475 CCTGCTG-CTGGTCCAGCTATCACAACCCTC
130 CCCGCTGTCT-ACCCAGCTACCACAACCCTC
34075505 AGTCCGGTCC
Statistics
Matches: 128, Mismatches: 29, Indels: 4
0.80 0.18 0.02
Matches are distributed among these distances:
170 3 0.02
171 125 0.98
ACGTcount: A:0.22, C:0.29, G:0.27, T:0.22
Consensus pattern (171 bp):
GCTTAGACATGGAATGAACTCTGTATACCTAAGCCAACCCATGAAACAAGCGTGCGGGCACTCAG
CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCAACCCGATCCCCCCCTACGTGCTGCCGATC
CCGCTGTCTACCCAGCTACCACAACCCTCGATTCGATTGGG
Found at i:34076056 original size:158 final size:157
Alignment explanation
Indices: 34075552--34076108 Score: 583
Period size: 158 Copynumber: 3.5 Consensus size: 157
34075542 TGCTTAGTCA
* * * * * **
34075552 TGGAATCAACTTTGTATGCCTAAGCCAACCCACGAAA-TGAACGTACGGGCGCTCAGTCGGTCGG
1 TGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGGAGCGTGCGGGCGCTCAGTCGACCGG
*
34075616 AGAGGCAGAATGCGCAAG-TCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTG-T
66 AGAGGCAGAATGCGCAAGCT-GGGGATCGGCCCGGTCCCCCCTGCGTGCTATCGATCCTGCTGCT
34075679 CACAACCCTCGGTCCGATCTGATCTTAGAC
130 -ACAACCCTCGGTCCGATC-GATCTTAGAC
* ** ** * *
34075709 TGGGAATGAACT-TCGTATGCCTAAGTCAACCGTCG-AA-GTGAGCGTGCGGGCATTGAG-CCAG
1 T-GGAATGAACTCT-GTATGCCTAAGCCAACCCACGAAACG-GAGCGTGCGGGCGCTCAGTCGA-
* * * * * * * * *
34075770 CCGGAAAGGCATAATGCGCAAGCTGGGGATTGGCTCGGTCCCCCTCTTCATGCTACCGGTCCCGC
62 CCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGGTCCCCC-CTGCGTGCTATCGATCCTGC
* * **
34075835 TGCCACAACCCTCGGTCCGACTGGGGCTTAGAC
126 TGCTACAACCCTCGGTCCGA-TCGATCTTAGAC
** *
34075868 ATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGA-CGTGCGGGCGCTCAGTCGACCG
1 -TGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGGAGCGTGCGGGCGCTCAGTCGACCG
*
34075932 GAGAGGCAGAATGCGCAAGCTGGGGATCAGCCCGGTCCCCCCTGCGTGCTATCGATCCTGCTGCT
65 GAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGGTCCCCCCTGCGTGCTATCGATCCTGCTGCT
* * *
34075997 GCAACCCTCGATCTGATTCGATCTTAGAC
130 ACAACCCTCGGTCCGA-TCGATCTTAGAC
* * *
34076026 TGAGAATGAACTCTGTATGCCTAAGTCAACCCACGAAAC-GAGCGTGCGGGCGCTCAGTTGACCA
1 TG-GAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGGAGCGTGCGGGCGCTCAGTCGACCG
* *
34076090 AAGAGGCAGGATGCGCAAG
65 GAGAGGCAGAATGCGCAAG
34076109 TCAGGGATCG
Statistics
Matches: 322, Mismatches: 63, Indels: 29
0.78 0.15 0.07
Matches are distributed among these distances:
157 9 0.03
158 186 0.58
159 118 0.37
160 8 0.02
161 1 0.00
ACGTcount: A:0.22, C:0.30, G:0.29, T:0.19
Consensus pattern (157 bp):
TGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGGAGCGTGCGGGCGCTCAGTCGACCGG
AGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGGTCCCCCCTGCGTGCTATCGATCCTGCTGCTA
CAACCCTCGGTCCGATCGATCTTAGAC
Found at i:34076290 original size:26 final size:26
Alignment explanation
Indices: 34076261--34076319 Score: 100
Period size: 26 Copynumber: 2.3 Consensus size: 26
34076251 ATTTTTCACT
34076261 ATTTTTGAAACTTTTTACGGTTCAAG
1 ATTTTTGAAACTTTTTACGGTTCAAG
*
34076287 ATTTTTTAAACTTTTTACGGTTCAAG
1 ATTTTTGAAACTTTTTACGGTTCAAG
*
34076313 AGTTTTG
1 ATTTTTG
34076320 TCCCCAAATT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.25, C:0.10, G:0.15, T:0.49
Consensus pattern (26 bp):
ATTTTTGAAACTTTTTACGGTTCAAG
Found at i:34076755 original size:26 final size:26
Alignment explanation
Indices: 34076719--34076771 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
34076709 GGCTCAAAAT
34076719 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
34076745 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
34076771 C
1 C
34076772 CTAAGCCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34077047 original size:158 final size:158
Alignment explanation
Indices: 34076745--34077037 Score: 372
Period size: 158 Copynumber: 1.9 Consensus size: 158
34076735 ACTCCGTATG
* * * * *
34076745 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCATTCAGT
1 CTTAGACTGGGAATAAACTCCGTATGCATAAGCCAACCCACGAAACGAACGTGCGGGCACTCAGC
** * * * *
34076810 GGGCCGAAGAGGCAGAATGTGCAAGCCGGGGATCGGCTCAGTCCCCCCTGTGTGCTGTCGATCCT
66 CAGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCAGTCCCCCCTGCGTGCTCTCGATCCT
34076875 GCTGCGAAAACCTTCAGTCTGTTTTGAT
131 GCTGCGAAAACCTTCAGTCTGTTTTGAT
* * * * ** *
34076903 CTTAGACTGGGAATAAACTCTGTATGCATAAGTCATCCCATGAAACGAACGTGCGGGTGCTGAGC
1 CTTAGACTGGGAATAAACTCCGTATGCATAAGCCAACCCACGAAACGAACGTGCGGGCACTCAGC
* * * *
34076968 CAGTCGAAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGGTCCCTCCTGCGTGCTACT-GATCC
66 CAGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCAGTCCCCCCTGCGTGCT-CTCGATCC
34077032 TGCTGC
130 TGCTGC
34077038 TGCAACCTTC
Statistics
Matches: 112, Mismatches: 22, Indels: 2
0.82 0.16 0.01
Matches are distributed among these distances:
158 111 0.99
159 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.29, T:0.21
Consensus pattern (158 bp):
CTTAGACTGGGAATAAACTCCGTATGCATAAGCCAACCCACGAAACGAACGTGCGGGCACTCAGC
CAGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCAGTCCCCCCTGCGTGCTCTCGATCCT
GCTGCGAAAACCTTCAGTCTGTTTTGAT
Found at i:34077062 original size:158 final size:158
Alignment explanation
Indices: 34076745--34077087 Score: 366
Period size: 158 Copynumber: 2.2 Consensus size: 158
34076735 ACTCCGTATG
* * * * *
34076745 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCATTCAGT
1 CTTAGACTGGGAATAAACTCCGTATGCATAAGCCAACCCACGAAACGAACGTGCGGGCACTCAGC
** * * * *
34076810 GGGCCGAAGAGGCAGAATGTGCAAGCCGGGGATCGGCTCAGTCCCCCCTGTGTGCTGTCGATCCT
66 CAGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCAGTCCCCCCTGCGTGCTCTCGATCCT
*** *
34076875 GCTGCGAAAACCTTCAGTCTGTTTTGAT
131 GCTGCGAAAACCTTCAGTCCAATTCGAT
* * * * ** *
34076903 CTTAGACTGGGAATAAACTCTGTATGCATAAGTCATCCCATGAAACGAACGTGCGGGTGCTGAGC
1 CTTAGACTGGGAATAAACTCCGTATGCATAAGCCAACCCACGAAACGAACGTGCGGGCACTCAGC
* * * *
34076968 CAGTCGAAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGGTCCCTCCTGCGTGCTACT-GATCC
66 CAGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCAGTCCCCCCTGCGTGCT-CTCGATCC
* *
34077032 TGCTGCTG-CAACCTTCCGTCCAATTCGAT
130 TGCTGC-GAAAACCTTCAGTCCAATTCGAT
* * * *
34077061 CTTAGGCTTGGATTGAACTCCGTATGC
1 CTTAGACTGGGAATAAACTCCGTATGC
34077088 TTAGATTGGA
Statistics
Matches: 150, Mismatches: 33, Indels: 4
0.80 0.18 0.02
Matches are distributed among these distances:
158 148 0.99
159 2 0.01
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.23
Consensus pattern (158 bp):
CTTAGACTGGGAATAAACTCCGTATGCATAAGCCAACCCACGAAACGAACGTGCGGGCACTCAGC
CAGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCAGTCCCCCCTGCGTGCTCTCGATCCT
GCTGCGAAAACCTTCAGTCCAATTCGAT
Found at i:34077463 original size:26 final size:26
Alignment explanation
Indices: 34077433--34077485 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
34077423 GTTGGCTTAG
34077433 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
**
34077459 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
34077485 G
1 G
34077486 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:34078185 original size:26 final size:26
Alignment explanation
Indices: 34078146--34078198 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
34078136 GCTGACTTAG
34078146 GCATACAGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
* *
34078172 GCATACGGATTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
34078198 G
1 G
34078199 ATCAGATCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:34078873 original size:26 final size:26
Alignment explanation
Indices: 34078844--34078896 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
34078834 GTTGACTTAG
34078844 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* * *
34078870 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
34078896 G
1 G
34078897 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:34079346 original size:158 final size:156
Alignment explanation
Indices: 34078870--34079371 Score: 451
Period size: 158 Copynumber: 3.2 Consensus size: 156
34078860 CCCAGTCTAA
* *
34078870 GCATACGGAGTTCATTCC-TAGTCTAAGATCGGATCGGACTGAAGGTTGCGGCAGCAGGATCGAC
1 GCATACGGAGTTCATTCCAT-GTCTAAGATCAGATCGGACTGAGGGTTGCGGCAGCAGGATCGAC
* * * * * * * *
34078934 AGTACGTAGGGGGGATCGGGTCGAT-TCACGACTTGCGCATTCTGCCTTTTCGACCGGCTGAGCA
65 AGTACGCAAGGGGGACCGGGCCAATCTCA-G-CTTGCGCATTCTGCCTCTTCG-GCGGCTGAGCG
* * *
34078998 CCCGCATGC-CGATTTCATGGGTTGGTTTAG
127 CTCGCATGCTC-ATTTCGTGGGTTGGCTTAG
* * * ** * * *
34079028 GCATAGGGAGTTCGTTTCATGTCTAAGCCCCAGCT-GGACTGAGGGTTGTGGCAGCAGGA-CTGG
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGATCGGACTGAGGGTTGCGGCAGCAGGATC-GA
* * * * * * * * *
34079091 CAGCACGCAGAGGGGGACTGGGCTAATCCCCGGCTTACGCATTATGCCTC-TCTGGCTGGCTCAC
64 CAGTACGCA-AGGGGGACCGGGCCAAT-CTCAGCTTGCGCATTCTGCCTCTTC-GGC-GGCTGAG
* * * *
34079155 CGCTCGCACGCTCCTTTCGTGGGTTGACATAG
125 CGCTCGCATGCTCATTTCGTGGGTTGGCTTAG
* * * **
34079187 GCATACAGAGTTCATTCC-TAGTCTAAGATCAGATCAGACCGAGGGTTGCGATAGCAGGATCGAC
1 GCATACGGAGTTCATTCCAT-GTCTAAGATCAGATCGGACTGAGGGTTGCGGCAGCAGGATCGAC
*
34079251 AGTACGCATGGGGGACCGGGCCAATCTCTAGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGCGC
65 AGTACGCAAGGGGGACCGGGCCAATCTC-AGCTTGCGCATTCTGCCTCTTCGG-CGGCTGAGCGC
*
34079316 TCGTATGCTCATTTCGTGGGTTGGCTTAG
128 TCGCATGCTCATTTCGTGGGTTGGCTTAG
*
34079345 GCATACGGAGTTTATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
34079372 CATACGGAGT
Statistics
Matches: 264, Mismatches: 64, Indels: 32
0.73 0.18 0.09
Matches are distributed among these distances:
157 3 0.01
158 147 0.56
159 110 0.42
160 3 0.01
161 1 0.00
ACGTcount: A:0.19, C:0.25, G:0.31, T:0.25
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGATCGGACTGAGGGTTGCGGCAGCAGGATCGACA
GTACGCAAGGGGGACCGGGCCAATCTCAGCTTGCGCATTCTGCCTCTTCGGCGGCTGAGCGCTCG
CATGCTCATTTCGTGGGTTGGCTTAG
Found at i:34079381 original size:26 final size:26
Alignment explanation
Indices: 34079345--34079397 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34079335 GTTGGCTTAG
*
34079345 GCATACGGAGTTTATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
34079371 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
34079397 G
1 G
34079398 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:34079750 original size:26 final size:26
Alignment explanation
Indices: 34079714--34079766 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
34079704 GTTGACTTAG
34079714 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
34079740 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
34079766 G
1 G
34079767 ATCAAACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:34079813 original size:870 final size:872
Alignment explanation
Indices: 34078489--34080477 Score: 2225
Period size: 870 Copynumber: 2.3 Consensus size: 872
34078479 GTTGACTTAC
* * *
34078489 GCATACAGAGTTCATTCCCAGTCTAAGAT-AGGACCAGCCCGAGGGTTGTGATAGTAGGACCAGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCA-GACCAGACCGAGGGTTGTGATAGCAGGACCAGC
* * * * * * * *
34078553 AGCAGGATTGGCAGCCCACAGGGGGGGACCAGGTCGATCCCCGACTTGCGTATTCTACCTCTTCG
65 AGCAGGA-TCGCAGCACGCAGGGGGGGACCGGGCCGATCCCAG-CTTAC-AATTCTACCTCTTCG
* * * ** * **
34078618 GCCGACTAAGTGCCGGTACGCTCATTTTGTGGGTTGGCCTAGGCATATAGAGTTCATTCCATGTC
127 GCCGACTGAGCGCCCGTACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
* * * ** *
34078683 TAAGCCCCAGCCGGACCGAGGGTTGTGCCAGTAGGACCGGCAGCGGGATCGACAGCATGTAGAGG
192 TAAGCCCCAGCCGAACCGAGGGTTGTGGCAGTAGGACCGGCAGCGAGATCGACAGCACATAGAGA
* * * * *
34078748 GGGACAAGGCTGATCCCCAACTTGCATATTATGCCTCTCCGACTGACCTCTCTGACCGATTGAGT
257 GAGACAAGGCTAATCCCCAA--TGC--ATTACGCATCT-C-ACTGACCTCTCTGACCGACTGAGT
* *
34078813 GCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGG
316 GCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGG
* ** * * *
34078878 AGTTCATTCCTAGTCTAAGATCGGATCGGACTGAAGGTTGCGGCAGCAGGATCGACAGTACGTAG
381 AGTTCATTCCCAGTCTAAGATCAAACCGGACTCAAGGTTGCGGCAGCAGGATCGACAGCACGTAG
* * * * *
34078943 GGGGGATCGGGTCGATTCACGA-CTTGC-GCATTCTGCCTTTTCGACCGGCTGAGCACCCGCATG
446 GGGGGACCGAGTCGA-TCACCAGCTT-CTGCATTCTGCCTCTCCGACCGGCTGAGCACCCGCATG
* * *
34079006 -CCGATTTCATGGGTTGGTTTAGGCATAGGGAGTTCGTTTCATGTCTAAGCCCCAGCTGGA-CTG
509 CCCG-TTTCATGGGTTGGCTTAAGCATAGGGAGTTCATTTCATGTCTAAGCCCCAGCTGGATC-G
* * * * *
34079069 AGGGTTGTGGCAGCAGGA-CTGGCAGCACGCAGAGGGGGACTGGG-CTAATCCCCGGCTTACGCA
572 AGGGTTGTGGCAACAGGATC-GACAGCACACAGAGGAGGACCGGGTC-AATCCCCGGCTTACGCA
* * * *
34079132 TTATGCCT-CTCTGGCTGGCTCACCGCTCGCACGCTCCTTTCGTGGGTTGACATAGGCATACAGA
635 TTATGCCTATTC-GGCCGGCTCACCGCCCGCACGCTCATTTCGTGGGTTGACATAGGCATAC-GA
* * * * * * *
34079196 GTTCATTCCTAGTCTAAGATCAGA-TCAGACCGAGGGTTGCGATAGCAGGATCGACAGTACGCAT
698 GTTCATTCCCAGCCTAAGATCAGACT-AGACCAAGGGTTACGACAGCAGGATCGACAGCACGCAG
* * * * *
34079260 GGGGGACCGGGCCAAT-CTCTAGCTTGCG-CATTCTGCCTCTTCGGTCGGCTGAGCGCTCGTATG
762 GGGGGACCGGGCCAATACTC-AGCTTACGAC-TTCTACCTCTTCGGTCGGCTGAGCGCCCGCACG
* * * *
34079323 CTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTTATTCCATGTCTAA
825 CTCATTTCGTGGGTTGGCTTAGCCATACGAAGTTCATTCCATATCTAA
* * * **
34079371 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGTGACAGCAATACCAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGATAGCAGGACCAGCA
* *
34079436 GCAGGATCAGTAGCACGCAGGGGGGGGACCGGGCCGATCCTTAGCTTACACATTCTACCTCTTCG
66 GCAGGATC-GCAGCACGCA-GGGGGGGACCGGGCCGATCC-CAGCTTACA-ATTCTACCTCTTCG
* *
34079501 GCCGACTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGTATACGGAGTTCATTCCATGTC
127 GCCGACTGAGCGCCCGTACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
* * *
34079566 TAAGCCCTAGTCGAACCGAGGGTTGTGGCAGTAGGACCGGCAGCGAGATCGATAGCACATAGAGA
192 TAAGCCCCAGCCGAACCGAGGGTTGTGGCAGTAGGACCGGCAGCGAGATCGACAGCACATAGAGA
** * * *
34079631 GAGACCGGGCTAATCTCC-A-GC-TTACGCAT-T-A-TG-CCTCTCTGATCGGCTGAGTGCCCGA
257 GAGACAAGGCTAATCCCCAATGCATTACGCATCTCACTGACCTCTCTGACCGACTGAGTGCCCGA
*
34079689 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCA
322 ACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCA
* *
34079754 TTCCCAGTCTAAGATCAAACCGGA-TCAAGGGTTGCGGTAGGAGGATCGACAGCACGTAGGGGGG
387 TTCCCAGTCTAAGATCAAACCGGACTCAA-GGTTGCGGCAGCAGGATCGACAGCACGTAGGGGGG
* * * * * * **
34079818 ACCGAGTTGATCCCCAGCTTCTGCATTTTGTCTCTCCGACCGGCTGGGCGCTTGCATGCCCGTTT
451 ACCGAGTCGATCACCAGCTTCTGCATTCTGCCTCTCCGACCGGCTGAGCACCCGCATGCCCGTTT
*
34079883 CGTGGGTTGGCTTAAGCATAGGGAGTTCATTTCATGTCTAAGCCCCAGCTGGATCGAGGGTTGTG
516 CATGGGTTGGCTTAAGCATAGGGAGTTCATTTCATGTCTAAGCCCCAGCTGGATCGAGGGTTGTG
* ** * * * * *
34079948 GTAATGGGATCGATAGCACATAGAGGAGGACCGGGTCGATCCTCGGCTTGCGCATTATGCCTATT
581 GCAACAGGATCGACAGCACACAGAGGAGGACCGGGTCAATCCCCGGCTTACGCATTATGCCTATT
** * *
34080013 CGGCCGGCTCAGTGCCCGCACGCTCATTTTGTGGGTTGACTTAGGCATACGAGTTCATTCCCAGC
646 CGGCCGGCTCACCGCCCGCACGCTCATTTCGTGGGTTGACATAGGCATACGAGTTCATTCCCAGC
* * * * * *
34080078 CTAAGATCGGACTGGACCAAGGGTTACGACAGCAGGATTGACAGCACGTAGGGGGGACCGGGTCG
711 CTAAGATCAGACTAGACCAAGGGTTACGACAGCAGGATCGACAGCACGCAGGGGGGACCGGGCCA
* * * *
34080143 ATACTCGGCTTATGACTTCTACCTCTTCGGTTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTG
776 ATACTCAGCTTACGACTTCTACCTCTTCGGTCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTG
34080208 GCTTAGCCATACGAAGTTCATTCCATATCTAA
841 GCTTAGCCATACGAAGTTCATTCCATATCTAA
* * * * **
34080240 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCTGACCAAGGGTTGCGATAGCAGGACCAATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGATAGCAGGACCAGCA
* * ** * * * **
34080305 GCAGGATCGACAGCACGTAAGGGGGGATTGGGCTGATCCCCGGCTTACGAATTCTGCCTCTTTAG
66 GCAGGATCG-CAGCACGCAGGGGGGGACCGGGCCGAT-CCCAGCTTAC-AATTCTACCTCTTCGG
* * ** * * * *
34080370 TCGGCTGAGCGCCCGTACGCTTGTTTCATGGTTTGGTTTAGGCATAGGGTGTTCATTCCATGTCT
128 CCGACTGAGCGCCCGTACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
* * * * * *
34080435 AAGCCCCAGCCGAACTGCGGGCTGTGGTAGTGGGATCGGCAGC
193 AAGCCCCAGCCGAACCGAGGGTTGTGGCAGTAGGACCGGCAGC
34080478 ACGTAGAGGG
Statistics
Matches: 927, Mismatches: 161, Indels: 52
0.81 0.14 0.05
Matches are distributed among these distances:
868 123 0.13
869 224 0.24
870 328 0.35
871 10 0.01
872 1 0.00
875 1 0.00
876 6 0.01
879 2 0.00
881 1 0.00
882 69 0.07
883 161 0.17
884 1 0.00
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.24
Consensus pattern (872 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGATAGCAGGACCAGCA
GCAGGATCGCAGCACGCAGGGGGGGACCGGGCCGATCCCAGCTTACAATTCTACCTCTTCGGCCG
ACTGAGCGCCCGTACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
CCCCAGCCGAACCGAGGGTTGTGGCAGTAGGACCGGCAGCGAGATCGACAGCACATAGAGAGAGA
CAAGGCTAATCCCCAATGCATTACGCATCTCACTGACCTCTCTGACCGACTGAGTGCCCGAACGC
TCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCC
CAGTCTAAGATCAAACCGGACTCAAGGTTGCGGCAGCAGGATCGACAGCACGTAGGGGGGACCGA
GTCGATCACCAGCTTCTGCATTCTGCCTCTCCGACCGGCTGAGCACCCGCATGCCCGTTTCATGG
GTTGGCTTAAGCATAGGGAGTTCATTTCATGTCTAAGCCCCAGCTGGATCGAGGGTTGTGGCAAC
AGGATCGACAGCACACAGAGGAGGACCGGGTCAATCCCCGGCTTACGCATTATGCCTATTCGGCC
GGCTCACCGCCCGCACGCTCATTTCGTGGGTTGACATAGGCATACGAGTTCATTCCCAGCCTAAG
ATCAGACTAGACCAAGGGTTACGACAGCAGGATCGACAGCACGCAGGGGGGACCGGGCCAATACT
CAGCTTACGACTTCTACCTCTTCGGTCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTA
GCCATACGAAGTTCATTCCATATCTAA
Found at i:34080251 original size:26 final size:26
Alignment explanation
Indices: 34080215--34080266 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
34080205 TTGGCTTAGC
34080215 CATACGAAGTTCATTCCATA-TCTAAG
1 CATACGAAGTTCATTCC-TAGTCTAAG
*
34080241 CATACGGAGTTCATTCCTAGTCTAAG
1 CATACGAAGTTCATTCCTAGTCTAAG
34080267 ATCAGACCTG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 2 0.08
26 22 0.92
ACGTcount: A:0.31, C:0.23, G:0.15, T:0.31
Consensus pattern (26 bp):
CATACGAAGTTCATTCCTAGTCTAAG
Found at i:34081301 original size:26 final size:26
Alignment explanation
Indices: 34081265--34081315 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
34081255 TTGACTTAGG
34081265 CATACGGAGTTCACTCCCAGTCTAAA
1 CATACGGAGTTCACTCCCAGTCTAAA
*
34081291 CATATGGAGTTCACTCCCAGTCTAA
1 CATACGGAGTTCACTCCCAGTCTAA
34081316 GATCGGATCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.25
Consensus pattern (26 bp):
CATACGGAGTTCACTCCCAGTCTAAA
Found at i:34081593 original size:158 final size:158
Alignment explanation
Indices: 34081418--34081791 Score: 384
Period size: 157 Copynumber: 2.4 Consensus size: 158
34081408 CGATTGAGCA
* * *
34081418 CCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-C
1 CCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCACCAGAC
* * *
34081482 CGGACCGAG-GGTGTGGCAGT-GAGACCGACAGCACGCAGAAGGGAATCGGGCCGATCCCTGGCT
66 CGGACCGAGTGGTGCGGCAGTAG-GA-CGACAGCACGCAGAAGGGAAT-GGGCCGATCCCCGACT
* * * *
34081545 TGCT-CATTATGCCTTTTCGGCTGACTCAACG
128 TG-TGCATTATACCTCTTCGACCGACTCAACG
* * * * *
34081576 CCCGCACGCTCATTTCGTGGGTTGACTTAGGCAT-GCGAAGTTCATTCC-TAGTGTAAG-ATCGG
1 CCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATAG-GGAGTTCATTCCAT-GTCTAAGCACCAG
* * * * ** *
34081638 ACTGGACCGAGTGTTGCGGCAGTAGGATGATAGCACGCAGGGGGGACTGGGCCGATCCCCGACTT
64 ACCGGACCGAGTGGTGCGGCAGTAGGACGACAGCACGCAGAAGGGAATGGGCCGATCCCCGACTT
* * * **
34081703 GTGCATTCTACCTCTTCGACCGGCTGAGTG
129 GTGCATTATACCTCTTCGACCGACTCAACG
* *
34081733 CCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCACGTCTAAGCA
1 CCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCA
34081792 TACGGAGTTC
Statistics
Matches: 175, Mismatches: 32, Indels: 18
0.78 0.14 0.08
Matches are distributed among these distances:
156 1 0.01
157 88 0.50
158 74 0.42
159 11 0.06
160 1 0.01
ACGTcount: A:0.18, C:0.27, G:0.30, T:0.24
Consensus pattern (158 bp):
CCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCACCAGAC
CGGACCGAGTGGTGCGGCAGTAGGACGACAGCACGCAGAAGGGAATGGGCCGATCCCCGACTTGT
GCATTATACCTCTTCGACCGACTCAACG
Found at i:34081799 original size:26 final size:26
Alignment explanation
Indices: 34081763--34081815 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34081753 GTTGGCTTAG
*
34081763 GCATATGGAGTTCATT-CCACGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
34081789 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
34081815 G
1 G
34081816 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:34082168 original size:25 final size:26
Alignment explanation
Indices: 34082131--34082181 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 26
34082121 GTTGACTTAG
34082131 GCATACAGAGTTCA-TCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
* * *
34082156 GCATACGGTGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
34082182 ATTCAGACCG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
25 12 0.55
26 10 0.45
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:34082613 original size:26 final size:26
Alignment explanation
Indices: 34082577--34082629 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
34082567 ATTGGCTTAG
34082577 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
34082603 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
34082629 G
1 G
34082630 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:34083011 original size:25 final size:26
Alignment explanation
Indices: 34082957--34083016 Score: 104
Period size: 26 Copynumber: 2.3 Consensus size: 26
34082947 GATGACTTAG
34082957 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
34082983 GCATACGGAGTTCATTCCC-GTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
34083008 GCATACGGA
1 GCATACGGA
34083017 CTCTCCGATC
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
25 15 0.45
26 18 0.55
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Done.