Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 374 of 402
Found at i:34083426 original size:157 final size:155
Alignment explanation
Indices: 34083017--34083429 Score: 350
Period size: 157 Copynumber: 2.6 Consensus size: 155
34083007 AGCATACGGA
** * *
34083017 CTCTCCGATCGACTGAGCGCCCGTATGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATT
1 CTCTCCGATCGACTGAGCGCCCGTACACTCGTTTCATGGGTT-GCTTAGGCATACGGAGTTCATT
* * ** * *
34083082 CCATGTCTAAGCCCCAACCGGACTGAGGGTTATGGCAGCGAGTCCGGCAGTACACAGAGGGGGAC
65 CCATGTCTAAGCCCCAA-C-TACCGAGGGTTGCGGCAGCGAGTCCGACAG-ACACACAGGGGGAC
*
34083147 CGGGCCAATCCCCAGCTTGTGCAGTATGC
127 CGGGCCAATCCCCAGCTTGTGCAGTATAC
* * * * * ** *
34083176 CTCTTCGGT-TAGCTCAGCGCCCGTACACTCATTTTGTGGGTTGACTTATGCATACGGAGTTCAT
1 CTCTCCGATCGA-CTGAGCGCCCGTACACTCGTTTCATGGGTTG-CTTAGGCATACGGAGTTCAT
* ***** *
34083240 TCCCA-GTCTGAGATTGGACTGGACCGAGGGTTGCGGTAGC-AGGAT-CGACAG-CACACAGGGG
64 T-CCATGTCTAAGCCCCAACT--ACCGAGGGTTGCGGCAGCGA-G-TCCGACAGACACACAGGGG
** * * * *
34083301 GATGGGGCCAATCCTCGGCTTGTGCATTCTAC
124 GACCGGGCCAATCCCCAGCTTGTGCAGTATAC
* *
34083333 CTCTCCGATCGACTGAGCACCCGTACACTCGTTTCATGGGTTAGCTTAGGCATATGGAGTTCATT
1 CTCTCCGATCGACTGAGCGCCCGTACACTCGTTTCATGGGTT-GCTTAGGCATACGGAGTTCATT
*
34083398 CCATGTCTAAGCCCCAAGCATACGGAGGGTTG
65 CCATGTCTAAGCCCCAA-C-TACCGAGGGTTG
34083430 TGGTTGTAGG
Statistics
Matches: 193, Mismatches: 49, Indels: 26
0.72 0.18 0.10
Matches are distributed among these distances:
156 3 0.02
157 102 0.53
158 7 0.04
159 77 0.40
160 4 0.02
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (155 bp):
CTCTCCGATCGACTGAGCGCCCGTACACTCGTTTCATGGGTTGCTTAGGCATACGGAGTTCATTC
CATGTCTAAGCCCCAACTACCGAGGGTTGCGGCAGCGAGTCCGACAGACACACAGGGGGACCGGG
CCAATCCCCAGCTTGTGCAGTATAC
Found at i:34083826 original size:609 final size:607
Alignment explanation
Indices: 34082688--34084042 Score: 1765
Period size: 609 Copynumber: 2.2 Consensus size: 607
34082678 TAGCACGTAG
* * *
34082688 GGGGGACTGGGCCAATACTCGGCTTGTGCATTCTACCTCTTCGGCC-AGCTGAGCGCCCGTACAC
1 GGGGGA-TGGGCCAATCCTCGGCTTGTGCATTCTACCTCTAC-GCCGA-CTGAGCACCCGTACAC
* * **
34082752 TCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCC-AGTCGGACAAAG
63 TCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAAG-CAGACGGAG
* * *
34082816 GGTTGTGGTTGTAGGACCGGTAGCGATATCGACAGCACAAAGAGGAGGATCGGGCTGATCCCCAG
127 GGTTGTGGTTGTAGGACCGGTAGCGATATCGACAACACAAAGAGGAGGACCGGGCTGATCCCCAA
* * * * * * * **
34082881 CTTGCGCATTATGCCTCTTCGATCGGCCTCTCTGATTGACTGAGTGCTCGCATGCTCGTTTTGTG
192 CTTGCGCATTATGCCTCTTCGACCAGCCTCTCCGATTGACTAAGCGCCCGCACGCTCGTTTCATG
*
34082946 GGATGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCGTCTAAGCA
257 GGATGACTTAGGCATACGGAGTTCATCCCCAATCTAAGCATACGGAGTTCATTCCCGTCTAAGCA
* * *
34083011 TACGGACTCTCCGATCGACTGAGCGCCCGTATGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAG
322 TACGGACTCTCCGACCGACTGAGCACCCGTATGCCCATTTCATGGGTTGGCTTAGGCATAGGGAG
* *
34083076 TTCATTCCATGTCTAAGCCCCAACCGGACTGAGGGTTATGGCAGCGAGTCCGGCAGTACACAGAG
387 TTCATTCCATGTCTAAGCCCCAACCGGACTGAGGGTTATGGCAGCGAGTCCGACAGCACACAGAG
** * * *
34083141 GGGGACCGGGCCAATCCCCAGCTTGTGCAGTATGCCTCTTCGGTTAGCTCAGCGCCCGTACACTC
452 GGGGACCGGGCCAATCCCCAGCTTACGCAGTATGCCTCTTCGATCAGCTCAGCGCCCGCACACTC
* **
34083206 ATTTTGTGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTGAGATTGGACTGGACCGAGGGT
517 ATTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTGAGATTGGACCAGACCGAGGGT
*
34083271 TGCGGTAGCAGGATCGACAGCACACA
582 TGCGATAGCAGGATCGACAGCACACA
* *
34083297 GGGGGATGGGGCCAATCCTCGGCTTGTGCATTCTACCTCTCCGATCGACTGAGCACCCGTACACT
1 GGGGGAT-GGGCCAATCCTCGGCTTGTGCATTCTACCTCTACG-CCGACTGAGCACCCGTACACT
* * *
34083362 CGTTTCATGGGTTAGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCCCCAAGCATACGGAGGG
64 CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAAGCAGACGGAGGG
* *
34083427 TTGTGGTTGTAGGACCGGTAGCGATATCGACAACACACAGAGGGGGACCGGGCTGATCCCCAACT
129 TTGTGGTTGTAGGACCGGTAGCGATATCGACAACACAAAGAGGAGGACCGGGCTGATCCCCAACT
* *
34083492 TGCGCGTTATGCCTC-TCTGACCAGCCTCTCCGATTGACTAAGCGCCCGCACGCTCGTTTCATGT
194 TGCGCATTATGCCTCTTC-GACCAGCCTCTCCGATTGACTAAGCGCCCGCACGCTCGTTTCATGG
* * * *
34083556 GTTGACTTAGGCATACGGAGTTTATCCCCAATCTAAGCATACGGAGTTCATTCCCGTCTTACGTA
258 GATGACTTAGGCATACGGAGTTCATCCCCAATCTAAGCATACGGAGTTCATTCCCGTC-TAAGCA
* * * *
34083621 TTC-TACCTCTCCGGCCGGCTGAGCACCCGTATGCCCATTTCATGGGTTGGCTTAGGCATAGGGA
322 TACGGA-CTCTCCGACCGACTGAGCACCCGTATGCCCATTTCATGGGTTGGCTTAGGCATAGGGA
** * * *
34083685 GTTCATTCCATGTCTAAGCCCCAGTCGGACTGAGGGTTGTGGCAGC-AGGTCTGACAGCACGCAG
386 GTTCATTCCATGTCTAAGCCCCAACCGGACTGAGGGTTATGGCAGCGA-GTCCGACAGCACACAG
** * * * * * *
34083749 ATTGGGACCGGGTCAATCCCCGGCTTACGCATTATGCCTCTTCGATCGGTTCAGC-CCCGCACGC
450 AGGGGGACCGGGCCAATCCCCAGCTTACGCAGTATGCCTCTTCGATCAGCTCAGCGCCCGCACAC
* * *
34083813 TCGTTTCGTGGGTTGACTTATGCATATGGAGTTCATTTCCAGTCTGAGATTGGACCAGACCGAGG
515 TCATTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTGAGATTGGACCAGACCGAGG
* **
34083878 GTTGTGATAGCAGGATCGACAGCATGCA
580 GTTGCGATAGCAGGATCGACAGCACACA
* * * * * * *
34083906 GCGGGGACCGGGTCGATCCCCGACTTGGGCATTCTACCT-TAACGGCCTG-CTGAGCACCCGCAC
1 G-GGGGA-TGGGCCAATCCTCGGCTTGTGCATTCTACCTCT-AC-GCC-GACTGAGCACCCGTAC
* * * * *
34083969 GCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCAGACTGG
61 ACTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAAGCAGAC-GG
34084034 -GGGTTGTGG
125 AGGGTTGTGG
34084043 CAGCGAGACC
Statistics
Matches: 647, Mismatches: 85, Indels: 27
0.85 0.11 0.04
Matches are distributed among these distances:
608 4 0.01
609 369 0.57
610 270 0.42
611 4 0.01
ACGTcount: A:0.20, C:0.27, G:0.28, T:0.25
Consensus pattern (607 bp):
GGGGGATGGGCCAATCCTCGGCTTGTGCATTCTACCTCTACGCCGACTGAGCACCCGTACACTCG
TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAAGCAGACGGAGGGTT
GTGGTTGTAGGACCGGTAGCGATATCGACAACACAAAGAGGAGGACCGGGCTGATCCCCAACTTG
CGCATTATGCCTCTTCGACCAGCCTCTCCGATTGACTAAGCGCCCGCACGCTCGTTTCATGGGAT
GACTTAGGCATACGGAGTTCATCCCCAATCTAAGCATACGGAGTTCATTCCCGTCTAAGCATACG
GACTCTCCGACCGACTGAGCACCCGTATGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCA
TTCCATGTCTAAGCCCCAACCGGACTGAGGGTTATGGCAGCGAGTCCGACAGCACACAGAGGGGG
ACCGGGCCAATCCCCAGCTTACGCAGTATGCCTCTTCGATCAGCTCAGCGCCCGCACACTCATTT
CGTGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTGAGATTGGACCAGACCGAGGGTTGCG
ATAGCAGGATCGACAGCACACA
Found at i:34084028 original size:158 final size:159
Alignment explanation
Indices: 34083620--34084178 Score: 511
Period size: 158 Copynumber: 3.5 Consensus size: 159
34083610 CGTCTTACGT
* * * * * *
34083620 ATTCTACCTCTCCGGCCGGCTGAGCACCCGTATGCCCATTTCATGGGTTGGCTTAGGCATAGGGA
1 ATTCTGCCTCTACGACCGGCTGAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGA
** * *
34083685 GTTCATTCCATGTCTAAGCCCCAGTCGGACTGAGGGTTGTGGCAGCAGG-TCTGACAGCACGCAG
66 GTTCATTCCATGTCTAAGCCCCAACCAGACTGAGGGTTGTGGCAGCAGGATC-GACAGCATGCAG
** * *
34083749 ATTGGGACCGGGTCAATCCCCGGCTTACGC
130 ACGGGGACCGGGTCAATCCCCGACTTGCGC
* * * * * * * * * *
34083779 ATTATGCCTCTTCGATCGGTTCAGC-CCCGCACGCTCGTTTCGTGGGTTGACTTATGCATATGGA
1 ATTCTGCCTCTACGACCGGCTGAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGA
* ***** * **
34083843 GTTCATTTCCA-GTCTGAGATTGGACCAGACCGAGGGTTGTGATAGCAGGATCGACAGCATGCAG
66 GTTCA-TTCCATGTCTAAGCCCCAACCAGACTGAGGGTTGTGGCAGCAGGATCGACAGCATGCAG
* *
34083907 -CGGGGACCGGGTCGATCCCCGACTTGGGC
130 ACGGGGACCGGGTCAATCCCCGACTTGCGC
* * * *
34083936 ATTCTACCT-TAACGGCCTGCTGAGCACCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGG
1 ATTCTGCCTCT-ACGACCGGCTGAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGG
* * * *
34084000 AGTTCATTCCATGTCTAAGCCCCAACCAGACTGGGGGTTGTGGCAGC-GAGACCGATAGCATGTA
65 AGTTCATTCCATGTCTAAGCCCCAACCAGACTGAGGGTTGTGGCAGCAG-GATCGACAGCATGCA
* * * *
34084064 GAGGGGGACCGGGCCAATCCCC-AGCTTGTGT
129 GACGGGGACCGGGTCAATCCCCGA-CTTGCGC
* * * * *** * *
34084095 ATTCTGCCTCTCCGACCGGCTGAACGCCCGCGCGGTTGTTTAATGGGTTGGCTTAGGCATACGGA
1 ATTCTGCCTCTACGACCGGCTGAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGA
*
34084160 GTTTATTCCATGTCTAAGC
66 GTTCATTCCATGTCTAAGC
34084179 ATATGGAGTT
Statistics
Matches: 313, Mismatches: 78, Indels: 18
0.77 0.19 0.04
Matches are distributed among these distances:
156 1 0.00
157 44 0.14
158 152 0.49
159 115 0.37
160 1 0.00
ACGTcount: A:0.18, C:0.27, G:0.30, T:0.25
Consensus pattern (159 bp):
ATTCTGCCTCTACGACCGGCTGAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGA
GTTCATTCCATGTCTAAGCCCCAACCAGACTGAGGGTTGTGGCAGCAGGATCGACAGCATGCAGA
CGGGGACCGGGTCAATCCCCGACTTGCGC
Found at i:34084181 original size:26 final size:26
Alignment explanation
Indices: 34084151--34084203 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
34084141 GTTGGCTTAG
*
34084151 GCATACGGAGTTTATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
34084177 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
34084203 G
1 G
34084204 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:34085361 original size:158 final size:156
Alignment explanation
Indices: 34084900--34085400 Score: 528
Period size: 159 Copynumber: 3.2 Consensus size: 156
34084890 CCCAGTCTAA
*
34084900 GCATACGGAGTTCATTCCTAGTCTAAGAT-TGAACCAGACCGAGGGTTGCGA-CAGTAGGATTGA
1 GCATACGGAGTTCATTCCTAGTCTAAGATCAG-ACCAGACCGAGGGTTGC-ATCAGTAGGATTGA
* * * * * * *
34084963 CAGCATGCAGGGGTACCGGGCCATTCCCCGACTTGCGTATTCTGCCACTCTGGCCGGCTGAGCGC
64 CAGCACGCAGGGGGATCGGGCCAATCCCCGACTTGCGTATTCTGCCTCTC-CGCTGGCTGAGCGC
* * * * *
34085028 CTGCATGCCCGTTTCATGGGTTGGCTTAG
128 CCGCACGCTCATTTCGTGGGTTGGCTTAG
* * ** * ** * * *
34085057 GCATAGGGAGTTCATTCCAAGTCTAAGCCCA-AGTCAGACCGAGGGTTGTGGT-AGTGGGATCGG
1 GCATACGGAGTTCATTCCTAGTCTAAGATCAGA-CCAGACCGAGGGTTG-CATCAGTAGGATTGA
* * *
34085120 CAGCACGCAGAGGGGGATCGAGCCAATCCCCGACTTGCGTATTATGCCTCTCCGACTGGCTCAGC
64 CAGCACGC--AGGGGGATCGGGCCAATCCCCGACTTGCGTATTCTGCCTCTCCG-CTGGCTGAGC
* * *
34085185 GCCCGCACACTCATTTCGTAGGTTGACTTAG
126 GCCCGCACGCTCATTTCGTGGGTTGGCTTAG
* * *
34085216 GGATACGAAGTTCATTCCTAGTCTAAGATCAGACCAGACAGAGGGTTGCATCAGTAGGATTGACA
1 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTGCATCAGTAGGATTGACA
** * *
34085281 GCACGCAGGAGGGATCGGGCCGGTCCACTG-CTTGCGTATTCTGCCTCTCCAGTTGGCTGAGCGC
66 GCACGCAGG-GGGATCGGGCCAATCC-CCGACTTGCGTATTCTGCCTCTCC-GCTGGCTGAGCGC
34085345 CCGCACGCTCATTTCGTGGGTTGGCTTAG
128 CCGCACGCTCATTTCGTGGGTTGGCTTAG
34085374 GCATACGGAGTTCATTCC-ATGTCTAAG
1 GCATACGGAGTTCATTCCTA-GTCTAAG
34085401 CCCTAGCCGG
Statistics
Matches: 277, Mismatches: 54, Indels: 25
0.78 0.15 0.07
Matches are distributed among these distances:
156 1 0.00
157 58 0.21
158 93 0.34
159 124 0.45
160 1 0.00
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.24
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTGCATCAGTAGGATTGACA
GCACGCAGGGGGATCGGGCCAATCCCCGACTTGCGTATTCTGCCTCTCCGCTGGCTGAGCGCCCG
CACGCTCATTTCGTGGGTTGGCTTAG
Found at i:34085601 original size:26 final size:26
Alignment explanation
Indices: 34085571--34085623 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34085561 GTTGACTTAG
34085571 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
34085597 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
34085623 G
1 G
34085624 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:34086456 original size:26 final size:26
Alignment explanation
Indices: 34086426--34086475 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
34086416 GACTTAGGCC
34086426 TACGGAGTTCATCCCCAGTCTAAGCA
1 TACGGAGTTCATCCCCAGTCTAAGCA
*
34086452 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATCCCCAGTCTAAG
34086476 ATCAGGTCGA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (26 bp):
TACGGAGTTCATCCCCAGTCTAAGCA
Found at i:34086792 original size:158 final size:159
Alignment explanation
Indices: 34086449--34086777 Score: 392
Period size: 158 Copynumber: 2.1 Consensus size: 159
34086439 CCCAGTCTAA
*** * * * * * **
34086449 GCATACGGAGTTCATTCCCAGTCTAAGATCAGGTCGAATAGAGGGTTAC-GACAGTAGGATCGGT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCACACCAAATCGAAGGTTGCTG-CAGCAGGATCGAC
* * * *
34086513 AGCACGTAGAGGGGGACCAGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGACCGGCTCAGCA
65 AGCACGTAGAGGGGGACCAGGCCGATCCCCGGCTTACGCATTATACCTCTTCGACCAGCTCAACA
* **
34086578 CCCGCACGCTGGTTTCATGGCTTGACTTAG
130 CCCACACGCTCATTTCATGGCTTGACTTAG
34086608 GCATACGGAGTTCATTCCCAGTCTAAGATCACACCAAATCGAAGGTTGCTGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCACACCAAATCGAAGGTTGCTGCAGCAGGATCGACA
* * * * * *
34086673 GCACGTAG-GGGGGATCGGGCTGATCCCTGGCTTACGCATTCTACCTCTTCGACCAGCTGAACAC
66 GCACGTAGAGGGGGACCAGGCCGATCCCCGGCTTACGCATTATACCTCTTCGACCAGCTCAACAC
* ** *
34086737 CCACATGCTCATTTTGTGGGTTGACTTAG
131 CCACACGCTCATTTCATGGCTTGACTTAG
34086766 GCATACGGAGTT
1 GCATACGGAGTT
34086778 TATTGCATGT
Statistics
Matches: 142, Mismatches: 27, Indels: 3
0.83 0.16 0.02
Matches are distributed among these distances:
158 80 0.56
159 61 0.43
160 1 0.01
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.23
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCACACCAAATCGAAGGTTGCTGCAGCAGGATCGACA
GCACGTAGAGGGGGACCAGGCCGATCCCCGGCTTACGCATTATACCTCTTCGACCAGCTCAACAC
CCACACGCTCATTTCATGGCTTGACTTAG
Found at i:34086977 original size:26 final size:26
Alignment explanation
Indices: 34086947--34087002 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
34086937 TGGGTCGACT
34086947 TAAGCATACAGAGTTCATCCCCAGTC
1 TAAGCATACAGAGTTCATCCCCAGTC
* *
34086973 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTCATCCCCAGTC
34086999 TAAG
1 TAAG
34087003 ATCGAACTAG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATCCCCAGTC
Found at i:34088433 original size:171 final size:171
Alignment explanation
Indices: 34088163--34088471 Score: 440
Period size: 171 Copynumber: 1.8 Consensus size: 171
34088153 GGATCGGGCC
* * ** * ** *
34088163 GATCCCCGGTTTGCGCATTATGCCTCTCTGGCTGACTGAGCACGCGCATGCTTGTTTCATGGGTT
1 GATCCCCGGCTTGCGCATTATGCCTATCCAGCCGACTGAGCACGCGCATGCCCGTTTCATAGGTT
*
34088228 GGCTTAGGCATACAGAGTTCATTTCATATCTAAGCCCTAGCTAGACCGAGGGTTGTGGCAGC-AG
66 GGCTTAGGCATACAGAGTTCATTCCATATCTAAGCCCTAGCTAGACCGAGGGTTGTGGCAGCGA-
34088292 GACCGGCAGTGGGATCGGCAGCACATAGAGGGGGACCGAATG
130 GACCGGCAGTGGGATCGGCAGCACATAGAGGGGGACCGAATG
* * *
34088334 GATCCCCGGCTTGCGCATTATGCCTATCCAGCCGACTGAGCGCTCGCATGCCCGTTTCGTAGGTT
1 GATCCCCGGCTTGCGCATTATGCCTATCCAGCCGACTGAGCACGCGCATGCCCGTTTCATAGGTT
** * * * *
34088399 GGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCTGGACTGAGGGTTGTGGTAGCGAG
66 GGCTTAGGCATACAGAGTTCATTCCATATCTAAGCCCTAGCTAGACCGAGGGTTGTGGCAGCGAG
34088464 ACCGGCAG
131 ACCGGCAG
34088472 CACGTAGAGA
Statistics
Matches: 119, Mismatches: 18, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
171 118 0.99
172 1 0.01
ACGTcount: A:0.19, C:0.25, G:0.31, T:0.24
Consensus pattern (171 bp):
GATCCCCGGCTTGCGCATTATGCCTATCCAGCCGACTGAGCACGCGCATGCCCGTTTCATAGGTT
GGCTTAGGCATACAGAGTTCATTCCATATCTAAGCCCTAGCTAGACCGAGGGTTGTGGCAGCGAG
ACCGGCAGTGGGATCGGCAGCACATAGAGGGGGACCGAATG
Found at i:34089020 original size:26 final size:26
Alignment explanation
Indices: 34088968--34089020 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
34088958 GTTGACTTAG
* * *
34088968 GCATACGGAGTTCATCCCCAGTGTAA
1 GCATACGAAGTTCATCCCCAATCTAA
*
34088994 GCATACGAAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
34089020 G
1 G
34089021 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:34090101 original size:26 final size:26
Alignment explanation
Indices: 34090071--34090123 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34090061 GTTGGCTTAG
34090071 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
34090097 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
34090123 G
1 G
34090124 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:34090837 original size:26 final size:26
Alignment explanation
Indices: 34090807--34090859 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34090797 GTTGGCTTAG
*
34090807 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
34090833 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
34090859 G
1 G
34090860 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:34090970 original size:13 final size:13
Alignment explanation
Indices: 34090952--34090977 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
34090942 TCCTTATTCT
34090952 GCCTCTCCGACCG
1 GCCTCTCCGACCG
34090965 GCCTCTCCGACCG
1 GCCTCTCCGACCG
34090978 ACTGAGAGCC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.08, C:0.54, G:0.23, T:0.15
Consensus pattern (13 bp):
GCCTCTCCGACCG
Found at i:34091046 original size:26 final size:26
Alignment explanation
Indices: 34091016--34091068 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
34091006 GTTGACTTAG
34091016 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
34091042 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
34091068 G
1 G
34091069 ATTGAATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:34091758 original size:184 final size:184
Alignment explanation
Indices: 34091506--34091840 Score: 406
Period size: 184 Copynumber: 1.8 Consensus size: 184
34091496 GGTTGGGGGG
* * * ** * *
34091506 GCCGGTTGAGCACCCGCACGCTCATTCCGTGGGTTGGCTTAGGCATATTGACTTTATTCCATGTC
1 GCCGGTTGAGCACCCACACGCTCATTCCATGGGTTGACTTAGGCATACGGACTTCATCCCATGTC
* * * * ** * * *
34091571 TAAGCCA-CCGGAGTTCATTCCCAGTCCAAGATCAGATC-GGGTCGAGGCTTGTGGCAGCAGGAT
66 TAAG-AATACGGAGTTCATTCCCAGTCCAAGATC-GAACTAGACCAAGGCTTGCGGCAACAGGAT
34091634 CGACAGCACACAGGGGGGACCAGGTCAATCCCTGGCTTGTGCATTCTACCTCTCCA
129 CGACAGCACACAGGGGGGACCAGGTCAATCCCTGGCTTGTGCATTCTACCTCTCCA
** * *
34091690 GCCGGTTGAGTGCCCACACGCTCGTTCCATGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GT
1 GCCGGTTGAGCACCCACACGCTCATTCCATGGGTTGACTTAGGCATACGGACTTCAT-CCCATGT
* *
34091754 CTAAGAATACGGAGTTCATTCCCAGTCTAAGATCGAACTAGACCAAGGGTTGCGGCAACAGGATC
65 CTAAGAATACGGAGTTCATTCCCAGTCCAAGATCGAACTAGACCAAGGCTTGCGGCAACAGGATC
* *
34091819 GACAGCACGCAGTGGGGACCAG
130 GACAGCACACAGGGGGGACCAG
34091841 ACCGTTTAAC
Statistics
Matches: 124, Mismatches: 24, Indels: 6
0.81 0.16 0.04
Matches are distributed among these distances:
183 4 0.03
184 117 0.94
185 3 0.02
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.22
Consensus pattern (184 bp):
GCCGGTTGAGCACCCACACGCTCATTCCATGGGTTGACTTAGGCATACGGACTTCATCCCATGTC
TAAGAATACGGAGTTCATTCCCAGTCCAAGATCGAACTAGACCAAGGCTTGCGGCAACAGGATCG
ACAGCACACAGGGGGGACCAGGTCAATCCCTGGCTTGTGCATTCTACCTCTCCA
Found at i:34091763 original size:26 final size:26
Alignment explanation
Indices: 34091734--34091785 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
34091724 TGACTTAGGC
34091734 ATACGGAGTTCATCCCCAGTCTAAGA
1 ATACGGAGTTCATCCCCAGTCTAAGA
*
34091760 ATACGGAGTTCATTCCCAGTCTAAGA
1 ATACGGAGTTCATCCCCAGTCTAAGA
34091786 TCGAACTAGA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (26 bp):
ATACGGAGTTCATCCCCAGTCTAAGA
Found at i:34092450 original size:13 final size:13
Alignment explanation
Indices: 34092432--34092456 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
34092422 TGCACATTAT
34092432 GCCTCTCCGGCCG
1 GCCTCTCCGGCCG
34092445 GCCTCTCCGGCC
1 GCCTCTCCGGCC
34092457 AGTTGAGCAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.56, G:0.28, T:0.16
Consensus pattern (13 bp):
GCCTCTCCGGCCG
Found at i:34093916 original size:26 final size:26
Alignment explanation
Indices: 34093880--34093929 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
34093870 GGCTTAGGCG
*
34093880 TACGGAGTTCATTCC-ATGTCTAAGCA
1 TACGAAGTTCATTCCTA-GTCTAAGCA
34093906 TACGAAGTTCATTCCTAGTCTAAG
1 TACGAAGTTCATTCCTAGTCTAAG
34093930 ATCAAACCAG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.32
Consensus pattern (26 bp):
TACGAAGTTCATTCCTAGTCTAAGCA
Found at i:34093983 original size:183 final size:184
Alignment explanation
Indices: 34093657--34094086 Score: 483
Period size: 183 Copynumber: 2.3 Consensus size: 184
34093647 CTCTGGCCGA
* * * * ** *
34093657 CTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACAAAGTTCATCCCCA-GTCTAAG
1 CTGAGAGCCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAAG
* ** ** *
34093721 CATATGAAGATCACTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCAGCAGCAGGATCGACAG
65 CATACGAAGATCACTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGCAGCAGCAGGACCGACAG
*
34093786 CACGTAGGGGGGACCGGGCC-GACCCC-GACTGGCGCATTCTGCCTCTT-CGGCCAG
130 CACGTAGGGGGGACCGGGCCAGACCCCAG-CTGACGCATTCTGCCT-TTCCGGCCAG
* ** *
34093840 CTGAGTGCCCGCACTTTCGTTTCGTGGGTTGGCTTAGGCGTACGGAGTTCATTCCATGTCTAAGC
1 CTGAGAGCCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
* * * * ** * *
34093905 ATACGAAGTTCATTCCTAGTCTAAGATCAAACCAGACTGAGGGTTGTGGTAGCAGGACCGA-AGT
66 ATACGAAGATCACTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGCAGCAGCAGGACCGACAGC
* * * *
34093969 ACGTAGGAGGGGACCGGGCCAGTCCCCAGCTTACGTATTCTGCCTTTCCGGCCGG
131 ACGTAGG-GGGGACCGGGCCAGACCCCAGCTGACGCATTCTGCCTTTCCGGCCAG
* * * *
34094024 CTGAGAGCCCGTACACTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTTATTCCATGGCTAA
1 CTGAGAGCCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
34094087 ACCCCAACCG
Statistics
Matches: 206, Mismatches: 36, Indels: 9
0.82 0.14 0.04
Matches are distributed among these distances:
182 12 0.06
183 114 0.55
184 79 0.38
185 1 0.00
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.24
Consensus pattern (184 bp):
CTGAGAGCCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
ATACGAAGATCACTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGCAGCAGCAGGACCGACAGC
ACGTAGGGGGGACCGGGCCAGACCCCAGCTGACGCATTCTGCCTTTCCGGCCAG
Found at i:34094758 original size:158 final size:157
Alignment explanation
Indices: 34094269--34094772 Score: 474
Period size: 158 Copynumber: 3.2 Consensus size: 157
34094259 CCCAGTCTAA
* * * * *
34094269 GCATATGGAGATCACTCCCAGTTTAAGATC-GAACTGGACCGAGGGTTGCGGCAGCAGGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATC-GGACCGAGGGTTGCGGCAGCAGGATCGAC
* * * ** * * * * *
34094333 AGCACGCATGGGGGA-TCGGACCGATGCCCGGCTGGCTCATTCTACCTCTTCGGCCAGCTGAGTG
65 AGCACGCATGGGGAACT-GGGCCAATGCCC-GCTTTCGCATTCTACCTCTTCGGTCGGTTGAGCG
* * *
34094397 CCCGCACACCCATTCCGTGGGTTGGCTTAG
128 CCCGCACGCTCATTTCGTGGGTTGGCTTAG
* ** ** * * *
34094427 GCATAGGGAGTTCATTCCTTGTCTAAGCCCCAG-TCGGACCGAGGGTTGTGGCAGCGGGACCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAG-ATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGAC
* * * * * * * * * * * * *
34094491 AGCACGCAGAGGGGTACCGAGCCAATTCCTGGTTTACGCATTATGCCTTTTCGGTCGGTTCAACA
65 AGCACGCA-TGGGGAACTGGGCCAATGCCCGCTTT-CGCATTCTACCTCTTCGGTCGGTTGAGCG
* * ** * * *
34094556 TCCGTACGCTTGTTTTGTGGGTTGACTTAT
128 CCCGCACGCTCATTTCGTGGGTTGGCTTAG
*
34094586 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAACAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGACA
* * *
34094651 GCACGCATGGGGAACTGGGCCAATGCCCGACTTTCGCATTCTTCCTCTCCGATCGGTTGAGCGCC
66 GCACGCATGGGGAACTGGGCCAATGCCCG-CTTTCGCATTCTACCTCTTCGGTCGGTTGAGCGCC
34094716 CGCACGCTCATTTCGTGGGTTGGCTTAG
130 CGCACGCTCATTTCGTGGGTTGGCTTAG
34094744 GCATACGGAGTTCATTCCCAGTCTAAGAT
1 GCATACGGAGTTCATTCCCAGTCTAAGAT
34094773 TTTGAGCCAT
Statistics
Matches: 264, Mismatches: 75, Indels: 14
0.75 0.21 0.04
Matches are distributed among these distances:
158 149 0.56
159 114 0.43
160 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGACA
GCACGCATGGGGAACTGGGCCAATGCCCGCTTTCGCATTCTACCTCTTCGGTCGGTTGAGCGCCC
GCACGCTCATTTCGTGGGTTGGCTTAG
Found at i:34096415 original size:26 final size:26
Alignment explanation
Indices: 34096385--34096437 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
34096375 GTTGACTTAG
*
34096385 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* *
34096411 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
34096437 G
1 G
34096438 ATTGGATCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:34096794 original size:159 final size:157
Alignment explanation
Indices: 34096411--34096900 Score: 443
Period size: 159 Copynumber: 3.1 Consensus size: 157
34096401 CCCAATCTAA
* ** * ** *
34096411 GCATACAGAGTTCATTCCCAGTCTAAGATTGGATCGAACCGAGGGTTGTAACAGCTGGATCGACG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGAACTGAGGGTTGTGGCAG-TGGATCGACA
* * * * * * * *
34096476 GCATGC--AGGGGGACTGGGCCGATCCTCGGCTTACGCATTCTGCCTCTCCAGCCGACTGAGTGC
65 GCATGCAGAGGGGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTTCA-CCGGCTAAGTGC
34096539 CCGCACGCTCGTTTCATGGGTTGGCTTAG
129 CCGCACGCTCGTTTCATGGGTTGGCTTAG
* * ** * * * ** * *
34096568 GCATAGGGAGTTCATT-CCATGTCTAGGCGCCAG-CCGGACTGAGGGTTATGGCAGCCGAACTAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGATCGAACTGAGGGTTGTGGCAGTGGATCGA-
* * * *
34096631 CAGCATGCAGAGGGGGACCGGGCCGATCCCCGATTTGCACATTATGCCTCTTCATTCGGCTCAGT
63 CAGCATGCAGAGGGGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTTCA-CCGGCTAAGT
* * *
34096696 GCCCGCGCGCTCGTTTCATGGGTTGACTTAT
127 GCCCGCACGCTCGTTTCATGGGTTGGCTTAG
* *
34096727 GCATATGGAGTTCATTCCCAGTCTAAGATCAGATCGAACTGAGGGTTGTGGTAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGAACTGAGGGTTGTGGCAGT-GGATCGACA
* * * * * * * *
34096792 GCACGCATGA--GGGATCGAGTCAATCCCCGACTTGCGTATTTTGCCTCTTCGACCGGCTAAGGG
65 GCATGCA-GAGGGGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTTC-ACCGGCTAAGTG
* * *
34096855 CCTGTATGCTCGTTTCATGGGTTGGCTTAG
128 CCCGCACGCTCGTTTCATGGGTTGGCTTAG
34096885 GCATACGGAGTTCATT
1 GCATACGGAGTTCATT
34096901 TGTCTAAGCA
Statistics
Matches: 259, Mismatches: 64, Indels: 19
0.76 0.19 0.06
Matches are distributed among these distances:
156 7 0.03
157 42 0.16
158 83 0.32
159 118 0.46
160 9 0.03
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.25
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGAACTGAGGGTTGTGGCAGTGGATCGACAG
CATGCAGAGGGGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTTCACCGGCTAAGTGCCC
GCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:34097632 original size:25 final size:26
Alignment explanation
Indices: 34097604--34097655 Score: 61
Period size: 25 Copynumber: 2.0 Consensus size: 26
34097594 GTTGACTTAG
*
34097604 GCATACGGAGTTTA-TCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
** *
34097629 GCATGTGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
34097655 G
1 G
34097656 ATCGGACTAG
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
25 11 0.50
26 11 0.50
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:34097995 original size:159 final size:159
Alignment explanation
Indices: 34097844--34098134 Score: 341
Period size: 159 Copynumber: 1.8 Consensus size: 159
34097834 GCGGCAGTGG
* * * * ** * *
34097844 GACCGACAGCACAC-AGAGGGGGATCGGGCTAATCCCAGGCTTACACATTATGGCTCTTCGACTG
1 GACCGACAGCACACAAG-GGGGGACCGGGCCAATCCCAGACTGACACATTATACCTCTCCGACCG
* * * *
34097908 GCTCAGCGCCCACACGCTCGTTTCATGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAG
65 ACTCAGCGCCCACACGATCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
34097973 ATTGGACCAGACCGAGGGTTGCGGCAGCAA
130 ATTGGACCAGACCGAGGGTTGCGGCAGCAA
* * * * * * *
34098003 GATCGATAGCACGCAAGGGGGGACCGGGCCGATCCCCGACTGGCACATTCTACCTCTCCGACCGA
1 GACCGACAGCACACAAGGGGGGACCGGGCCAATCCCAGACTGACACATTATACCTCTCCGACCGA
* * * * * *
34098068 CTGAGCGCCCGCAGGATCATTTCGTGGTTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
66 CTCAGCGCCCACACGATCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
34098133 TT
131 TT
34098135 TTGAGCCACG
Statistics
Matches: 106, Mismatches: 25, Indels: 2
0.80 0.19 0.02
Matches are distributed among these distances:
159 104 0.98
160 2 0.02
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.22
Consensus pattern (159 bp):
GACCGACAGCACACAAGGGGGGACCGGGCCAATCCCAGACTGACACATTATACCTCTCCGACCGA
CTCAGCGCCCACACGATCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
TTGGACCAGACCGAGGGTTGCGGCAGCAA
Found at i:34099022 original size:157 final size:155
Alignment explanation
Indices: 34098564--34099066 Score: 444
Period size: 159 Copynumber: 3.2 Consensus size: 155
34098554 CAGCCCCAGT
* * * * *
34098564 CTTA-GCATACGGAGTTCATTCCTAGTCTAAGAT-TGGACCAGACCGAGGGTTATGATAGCAGGA
1 CTTAGGCATACGGAGTTCATTCCAAGTCTAAGATCCGGA-AAGACTGAGGGTTATGGTAGCAGGA
*
34098627 TC-AGCAGCACGTAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTTGGCT
65 TCGA-CAGCACGCA-GGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTTGG-T
* * *
34098691 AAGCGA-CCGCACGCCCGTTTCGTGGGTTGG
127 AA-C-ACCCGCACGCTCGTTTTGTGGGTTGA
* * * ** * * * **
34098721 CTTAGGCATATGGCGTTCATTCCATGTCTAAG--CCCCAACCAAACTGAGGGTTGTGGCAGTGGG
1 CTTAGGCATACGGAGTTCATTCCAAGTCTAAGATCCGGAA--AGACTGAGGGTTATGGTAGCAGG
* * * * * * ***
34098784 ACCGGA-AGCATGCAGAGGGGGATCGGGCCGATCCCCGGCTTACGCATTATGCCTCTTCAGCCAG
64 ATC-GACAGCACGC--AGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTC-TCCGGTTG
* * * *
34098848 CTCAGCACTCACACGCTCGTTTTGTGGGTTGA
125 GT-AACACCCGCACGCTCGTTTTGTGGGTTGA
* * * * *
34098880 CTTATGCATACAGAGTTCATTCCAAGTCTAAGATCGGGAAAGACTGAGGATTATGGTAGCAAGAT
1 CTTAGGCATACGGAGTTCATTCCAAGTCTAAGATCCGGAAAGACTGAGGGTTATGGTAGCAGGAT
34098945 CGACAGCACGCAGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTTGGTGGAA
66 CGACAGCACGCAGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTTGGT--AA
* * *
34099010 CCCCCGCACGCTCATTTTGTGGGTGGA
129 CACCCGCACGCTCGTTTTGTGGGTTGA
* *
34099037 TTTAGGCATACGGAGTTCATTCCCAGTCTA
1 CTTAGGCATACGGAGTTCATTCCAAGTCTA
34099067 GGATTTTGAG
Statistics
Matches: 263, Mismatches: 68, Indels: 30
0.73 0.19 0.08
Matches are distributed among these distances:
156 5 0.02
157 91 0.35
158 49 0.19
159 108 0.41
160 7 0.03
161 3 0.01
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (155 bp):
CTTAGGCATACGGAGTTCATTCCAAGTCTAAGATCCGGAAAGACTGAGGGTTATGGTAGCAGGAT
CGACAGCACGCAGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTTGGTAACA
CCCGCACGCTCGTTTTGTGGGTTGA
Found at i:34101033 original size:26 final size:26
Alignment explanation
Indices: 34100998--34101076 Score: 122
Period size: 26 Copynumber: 3.0 Consensus size: 26
34100988 GTTGACTTAG
* *
34100998 GCATATAGAGTTCATCCCCAATCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
34101024 GCATGCAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
34101050 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
34101076 G
1 G
34101077 ATCGAACCAG
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:34101391 original size:159 final size:157
Alignment explanation
Indices: 34101107--34101394 Score: 334
Period size: 159 Copynumber: 1.8 Consensus size: 157
34101097 GTGACAGTAG
* * * * *
34101107 GATCGGCAGCACGCAGGGGGGACCGGGCCGATCCTCGGCTTGCGAATTCTGCCTCTCCGATCGGT
1 GATCGGCAGCACACAGGGGGGACCGGGCCAATCCTCGGCTTACGAATTATGCCTCTCCGATCGGC
** * *
34101172 TGAGTGCCCGTACACCCATTTCATGGGTTGGCTCAGGCATAGGGAGCTCATTCCATGTCTAAGCC
66 TGAACGCCCG-ACACCCATTTCATGGGTTGGCTCAGGCATACGGAGCTCATCCCATGTCTAAGCC
34101237 CCAGTAGGACCGAGGGTTGTGGTAGCGA
130 CCAGTAGGACCGAGGGTTGTGGTAGCGA
* * *
34101265 GATCGGCAGCACACAGAGGGGGACCGGGTCAATCCTCGGCTTACGCATTATGCCTCTCCG-GCTG
1 GATCGGCAGCACACAG-GGGGGACCGGGCCAATCCTCGGCTTACGAATTATGCCTCTCCGATC-G
* * *
34101329 GCTGAACGCCC-ACACGCTCGA-TTCATGGGTTGAG-TTAGGCATACGGAGTTTATCCCCA-GTC
64 GCTGAACGCCCGACAC-C-C-ATTTCATGGGTTG-GCTCAGGCATACGGAGCTCAT-CCCATGTC
34101390 TAAGC
124 TAAGC
34101395 ATACAGAGTT
Statistics
Matches: 108, Mismatches: 15, Indels: 13
0.79 0.11 0.10
Matches are distributed among these distances:
157 4 0.04
158 17 0.16
159 82 0.76
160 5 0.05
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.22
Consensus pattern (157 bp):
GATCGGCAGCACACAGGGGGGACCGGGCCAATCCTCGGCTTACGAATTATGCCTCTCCGATCGGC
TGAACGCCCGACACCCATTTCATGGGTTGGCTCAGGCATACGGAGCTCATCCCATGTCTAAGCCC
CAGTAGGACCGAGGGTTGTGGTAGCGA
Found at i:34101403 original size:26 final size:25
Alignment explanation
Indices: 34101367--34101418 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 25
34101357 GTTGAGTTAG
* *
34101367 GCATACGGAGTTTATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCC-GTCTAA
*
34101393 GCATACAGAGTTCATTCCCGTCTAA
1 GCATACAGAGTTCATCCCCGTCTAA
34101418 G
1 G
34101419 ATCAGACCAG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (25 bp):
GCATACAGAGTTCATCCCCGTCTAA
Found at i:34101698 original size:342 final size:343
Alignment explanation
Indices: 34101024--34101735 Score: 874
Period size: 342 Copynumber: 2.1 Consensus size: 343
34101014 CCCAATCTAA
*
34101024 GCATGCAGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGAACCAGAC
1 GCATACAGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGAACCAGAC
* * * * * * *
34101089 TGTGGGATGTGACAGTAGGATCGGCAGCACGCAGGGGGGACCGGGCCGATCCTCGGCTTGCGAAT
66 CGAGGGATGCGACAGCAGGATCGGCAGCAAGCAGGGGGGACCGGGCCGATCCTCAGCTTCCGAAT
* * * * *
34101154 TCTGCCTCTCCGATCGGTTGAGTGCCCGTACACCCATTTCATGGGTTGGCTCAGGCATAGGGAGC
131 TCTGCCTCTCCGACCCGCTGAGCGCCCGCACACCCATTTCATGGGTTGGCTCAGGCATAGGGAGC
* * * * *
34101219 TCATTCCATGTCTAAGCCCCAGTAGGACCGAGGGTTGTGGTAGCGAGATCGGCAGCACACAGAGG
196 TCATTCCATGTCTAAGCCCCAGCAGGACCGAGGGTTGTGATAGAGAGACCCGCAGCACACAGAGG
* * * ** *
34101284 GGGACCGGGTCAATCCTCGGCTTACGCATTATGCCTCTCCGGCTGGCTGAACGCCCACACGCTCG
261 GGGACCGGGCCAATCCCCAGCTTACGCATTATGCCTCTCCGGCCAGCTCAACGCCCACACGCTCG
*
34101349 ATTCATGGGTTGAGTTAG
326 ATTCATGGGTTGACTTAG
* *
34101367 GCATACGGAGTTTATCCCCAGTCTAAGCATACAGAGTTCATTCCC-GTCTAAGATC-AGACCAGA
1 GCATACAGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGA-ACCAGA
* * * * * *
34101430 CCGAGGGTTGCGACAGCAGGATGGGCAGCAAGCGGGGGGGATCGGGTCGATCC-CTAGCTTCCGT
65 CCGAGGGATGCGACAGCAGGATCGGCAGCAAGCAGGGGGGACCGGGCCGATCCTC-AGCTTCCGA
* ** * * *
34101494 ATTCTGCCTCTCCGACCCGCTGAGCGTCCGCACGTCCGTTTCATGGGTTGGCTTAGGTATAGGGA
129 ATTCTGCCTCTCCGACCCGCTGAGCGCCCGCACACCCATTTCATGGGTTGGCTCAGGCATAGGGA
* * * * *
34101559 GTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGATAGAGGGACCCGTAGCACGCAGA
194 GCTCATTCCATGTCTAAGCCCCAGCAGGACCGAGGGTTGTGATAGAGAGACCCGCAGCACACAGA
* * * * ** * * *
34101624 GGGGGATCGGGCCGATCCCCAGCTTGCGCGTTATGCCTCTTTGGCCAGTTCAGCGCCCACATGCT
259 GGGGGACCGGGCCAATCCCCAGCTTACGCATTATGCCTCTCCGGCCAGCTCAACGCCCACACGCT
*
34101689 C-ATTTCATGGGTTGACTTAT
324 CGA-TTCATGGGTTGACTTAG
*
34101709 GCATACAGAGTTCATTCCCAGTCTAAG
1 GCATACAGAGTTCATCCCCAGTCTAAG
34101736 ATCAGATCAG
Statistics
Matches: 309, Mismatches: 57, Indels: 7
0.83 0.15 0.02
Matches are distributed among these distances:
341 3 0.01
342 264 0.85
343 42 0.14
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.22
Consensus pattern (343 bp):
GCATACAGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGAACCAGAC
CGAGGGATGCGACAGCAGGATCGGCAGCAAGCAGGGGGGACCGGGCCGATCCTCAGCTTCCGAAT
TCTGCCTCTCCGACCCGCTGAGCGCCCGCACACCCATTTCATGGGTTGGCTCAGGCATAGGGAGC
TCATTCCATGTCTAAGCCCCAGCAGGACCGAGGGTTGTGATAGAGAGACCCGCAGCACACAGAGG
GGGACCGGGCCAATCCCCAGCTTACGCATTATGCCTCTCCGGCCAGCTCAACGCCCACACGCTCG
ATTCATGGGTTGACTTAG
Found at i:34101700 original size:159 final size:159
Alignment explanation
Indices: 34101532--34101896 Score: 373
Period size: 159 Copynumber: 2.3 Consensus size: 159
34101522 CGCACGTCCG
* * * * *
34101532 TTTCATGGGTTGGCTTAGGTATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCGGACCGAGGGT
1 TTTCATGGGTTGGCTTAGGTATACGGAGTTCATTCCA-GTCTAAGCACCAGACCAGACCAAAGGT
* * *
34101596 TGTGATAG-AGGGACCCG-TAGCAC-GCAGAGGG-GGATCGGGCCGATCCCCAGCTTGCGCGTTA
65 TATGATAGTA-GGA-CCGATAGCACAG-AG-GGGAGGATCGGGCCGATCCCCAACTTGCGCATTA
** * *
34101657 TGCCTCTTTGGCCAGTTCAGCGCCCACATGCTCA
126 TGCCTCTCCGGCCAGTTCAGCACCCACACGCTCA
* * * * * *
34101691 TTTCATGGGTTGACTTATGCATACAGAGTTCATTCCCAGTCTAAG-ATCAGATCAGACCAAAGGT
1 TTTCATGGGTTGGCTTAGGTATACGGAGTTCATT-CCAGTCTAAGCACCAGACCAGACCAAAGGT
* * * * *
34101755 TATGGTAGTAGGATCGATAGGACAGAGGGGAGGATCGGGCCGATCCCCAACTTGTGCATTCTGCC
65 TATGATAGTAGGACCGATAGCACAGAGGGGAGGATCGGGCCGATCCCCAACTTGCGCATTATGCC
** * **
34101820 TCTCCGGCTGGTTGAGCACCCGTACGCTCA
130 TCTCCGGCCAGTTCAGCACCCACACGCTCA
34101850 TTTCATGGGTTGGCTTAGGTATACGGAGTTCATTCCAAGTCTAAGCA
1 TTTCATGGGTTGGCTTAGGTATACGGAGTTCATTCC-AGTCTAAGCA
34101897 TACGAACTTC
Statistics
Matches: 166, Mismatches: 32, Indels: 15
0.78 0.15 0.07
Matches are distributed among these distances:
158 10 0.06
159 150 0.90
160 6 0.04
ACGTcount: A:0.21, C:0.24, G:0.29, T:0.25
Consensus pattern (159 bp):
TTTCATGGGTTGGCTTAGGTATACGGAGTTCATTCCAGTCTAAGCACCAGACCAGACCAAAGGTT
ATGATAGTAGGACCGATAGCACAGAGGGGAGGATCGGGCCGATCCCCAACTTGCGCATTATGCCT
CTCCGGCCAGTTCAGCACCCACACGCTCA
Found at i:34102627 original size:26 final size:26
Alignment explanation
Indices: 34102591--34102643 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
34102581 GTTGACTTAG
*
34102591 GCATACGGAGTTCATCCCTAGGCTAA
1 GCATACAGAGTTCATCCCTAGGCTAA
* *
34102617 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCTAGGCTAA
34102643 G
1 G
34102644 ATCAGACCAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCTAGGCTAA
Found at i:34102999 original size:159 final size:158
Alignment explanation
Indices: 34102617--34103046 Score: 393
Period size: 159 Copynumber: 2.7 Consensus size: 158
34102607 CCTAGGCTAA
* * * * *
34102617 GCATACAGAGTTCATTCCTAGTCTAAGATCAGACCAAACCGAGGGTTACGGCAGCAGGATCGTCA
1 GCATACGGAGTTCATTCCTAGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCAGGATCGACA
* * * * ** * ** * *
34102682 ACACGCAAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTAAGTGCC
66 GCACGCAAGGGCGAACGAGCCGATCCCCAACTTGCGCATTATGCCTCTCCGACCAGCTAAGCGCC
* *
34102747 CGCACGCCTGTTTCGTGGGTTGGCTTAG
131 CGCACGCCTGTTTCGTGGGTTGACATAG
* ** * * * * * *
34102775 GCATAGGGAGTTCATTCC-ATGTCTAAGCCCTAGCT-AGACCAAAGGTTGTGGCAGCGGGACCGA
1 GCATACGGAGTTCATTCCTA-GTCTAAGATC-AGATCAGACCGAGGGTTGCGGCAGCAGGATCGA
* * * *
34102838 CAGCACGTAGAGGGCGAACGAGTCGATCCCCAACTTGCGCATTATGCCTCTCCGACCAGTTCAGC
64 CAGCACGCA-AGGGCGAACGAGCCGATCCCCAACTTGCGCATTATGCCTCTCCGACCAGCTAAGC
* *
34102903 GCCCGTACG-CTCGTTTCGTGGGTTTACATAG
128 GCCCGCACGCCT-GTTTCGTGGGTTGACATAG
* * *
34102934 GCATACGGAGTTCATTCCTAGTCTAAGATCAGATCGGACCGAGGGTTGCGGTAGCAGGATTGACA
1 GCATACGGAGTTCATTCCTAGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCAGGATCGACA
* * * * * *
34102999 GCACACAGAGGG-GATCGGGCC-AGTCCCCAGCTTGCGTATTTTGCCTCT
66 GCACGCA-AGGGCGAACGAGCCGA-TCCCCAACTTGCGCATTATGCCTCT
34103047 TCGGTCGGCT
Statistics
Matches: 212, Mismatches: 53, Indels: 14
0.76 0.19 0.05
Matches are distributed among these distances:
157 2 0.01
158 84 0.40
159 125 0.59
160 1 0.00
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.22
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCTAGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCAGGATCGACA
GCACGCAAGGGCGAACGAGCCGATCCCCAACTTGCGCATTATGCCTCTCCGACCAGCTAAGCGCC
CGCACGCCTGTTTCGTGGGTTGACATAG
Found at i:34103097 original size:158 final size:158
Alignment explanation
Indices: 34102617--34103109 Score: 492
Period size: 158 Copynumber: 3.1 Consensus size: 158
34102607 CCTAGGCTAA
* * * *
34102617 GCATACAGAGTTCATTCCTAGTCTAAGATCAGACCAAACCGAGGGTTACGGCAGCAGGATCGTCA
1 GCATACAGAGTTCATTCCTAGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCAGGATCGACA
* * *
34102682 ACACGCA-AGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTAAGTGC
66 GCACGCAGA-GGGGATCGGGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGGTCGGCTAAGTGC
34102746 CCGCACGC-CTGTTTCGTGGGTTGGCTTAG
130 CCGCACGCTC-GTTTCGTGGGTTGGCTTAG
** ** * * * * * *
34102775 GCATAGGGAGTTCATTCC-ATGTCTAAGCCCTAGCT-AGACCAAAGGTTGTGGCAGCGGGACCGA
1 GCATACAGAGTTCATTCCTA-GTCTAAGATC-AGATCAGACCGAGGGTTGCGGCAGCAGGATCGA
* * * * * ** * * * *
34102838 CAGCACGTAGAGGGCGAACGAGTCGATCCCCAACTTGCGCATTATGCCTCTCCGACCAGTTCAGC
64 CAGCACGCAGAGGG-GATCGGGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGGTCGGCTAAGT
* ** *
34102903 GCCCGTACGCTCGTTTCGTGGGTTTACATAG
128 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * *
34102934 GCATACGGAGTTCATTCCTAGTCTAAGATCAGATCGGACCGAGGGTTGCGGTAGCAGGATTGACA
1 GCATACAGAGTTCATTCCTAGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCAGGATCGACA
* * * * *
34102999 GCACACAGAGGGGATCGGGCC-AGTCCCCAGCTTGCGTATTTTGCCTCTTCGGTCGGCTGAGTGC
66 GCACGCAGAGGGGATCGGGCCGA-TCCCCAGCTTGCGCATTATGCCTCTCCGGTCGGCTAAGTGC
* **
34103063 CCACACGCTCGTTTCAAGGGTTGGCTTAG
130 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
*
34103092 GCATACAGAATTCATTCC
1 GCATACAGAGTTCATTCC
34103110 ATGTCAAAGC
Statistics
Matches: 259, Mismatches: 68, Indels: 16
0.76 0.20 0.05
Matches are distributed among these distances:
157 2 0.01
158 132 0.51
159 123 0.47
160 2 0.01
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.23
Consensus pattern (158 bp):
GCATACAGAGTTCATTCCTAGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCAGGATCGACA
GCACGCAGAGGGGATCGGGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGGTCGGCTAAGTGCC
CGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:34103525 original size:26 final size:26
Alignment explanation
Indices: 34103495--34103547 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34103485 GTTGACTTAG
*
34103495 GCATACGGAGTTCA-TCCCAAGTCTAA
1 GCATACAGAGTTCATTCCCAA-TCTAA
34103521 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
34103547 G
1 G
34103548 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 19 0.76
27 6 0.24
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:34104819 original size:158 final size:156
Alignment explanation
Indices: 34104406--34104905 Score: 454
Period size: 158 Copynumber: 3.2 Consensus size: 156
34104396 CCCAGTCTAA
* * *
34104406 GCATATGGAGCTCATTCCCA-GTCTAAGATCGGATCGGACCGAGGGTTACGGCAATAGGATCGGC
1 GCATATGGAGTTCATT-CCATGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAATAGGA-CTGC
* * *
34104470 AGCACGTA-GGGGGATCGGGCCGATCCCCGACTTACGCATTCTGCCTCTCCGACCAGT-TGAGCG
64 AGCACGCAGGGGGGATCGGGCCGATCCCCG-CTTGCGCATTCTGCCTCTCCGACC-GTCTGAGCA
* * *
34104533 CCTGCACGCCCGTTTCGTGGGTTGGCTTAG
127 CCCGCACGCTCGTTTCGTGGGTTAGCTTAG
* * * * ** * * * * *
34104563 GTATAGGGAGTTCATTCCATGTCAAAG-CCCCAGCCGGACCGAGGGTTGTGGCAATGGGACCGGA
1 GCATATGGAGTTCATTCCATGTCTAAGATCGGA-TCGGACCGAGGGTTGCGGCAATAGGACTGCA
* * ** * * *
34104627 GCACGCAGAGGGGGACCGAGCCGATCCATGGCTTGCACATTATGCCTCTCCGACCGTCTCAGCAC
65 GCACGCAG-GGGGGATCGGGCCGATCC-CCGCTTGCGCATTCTGCCTCTCCGACCGTCTGAGCAC
* * *
34104692 CCGAACGCTCATTTCGTGGGTTAACTTAG
128 CCGCACGCTCGTTTCGTGGGTTAGCTTAG
* ** *
34104721 GCATATGGAGTTCATTCCCA-GTCTAAGATCGGATCGGACCGAGGGTTGCGGTAGCAGGACTGAT
1 GCATATGGAGTTCATT-CCATGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAATAGGACTG-C
* * * * * *
34104785 AGCATGCAGGGGGGATCGGGCTGGTCCCCAGCTTGTGCATTCTACCTCTCCGACAG-CTTGAGCA
64 AGCACGCAGGGGGGATCGGGCCGATCCCC-GCTTGCGCATTCTGCCTCTCCGACCGTC-TGAGCA
* * *
34104849 CCCGCACGCTCGTTTTGTGGGTTTGCTTTG
127 CCCGCACGCTCGTTTCGTGGGTTAGCTTAG
**
34104879 GCATACAGAGTTCATTCCATGTCTAAG
1 GCATATGGAGTTCATTCCATGTCTAAG
34104906 CATACAGAGT
Statistics
Matches: 267, Mismatches: 64, Indels: 23
0.75 0.18 0.06
Matches are distributed among these distances:
156 14 0.05
157 47 0.18
158 192 0.72
159 14 0.05
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (156 bp):
GCATATGGAGTTCATTCCATGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAATAGGACTGCAG
CACGCAGGGGGGATCGGGCCGATCCCCGCTTGCGCATTCTGCCTCTCCGACCGTCTGAGCACCCG
CACGCTCGTTTCGTGGGTTAGCTTAG
Found at i:34104915 original size:26 final size:26
Alignment explanation
Indices: 34104879--34104931 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
34104869 GTTTGCTTTG
34104879 GCATACAGAGTTCATTC-CATGTCTAA
1 GCATACAGAGTTCATTCTCA-GTCTAA
34104905 GCATACAGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATTCTCAGTCTAA
34104931 G
1 G
34104932 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCTCAGTCTAA
Found at i:34105115 original size:26 final size:26
Alignment explanation
Indices: 34105076--34105125 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
34105066 TTGACTTAGC
*
34105076 CATACGGAGTTCATCCCCAGTCTATG
1 CATACGGAGCTCATCCCCAGTCTATG
* *
34105102 CATATGGAGCTCATTCCCAGTCTA
1 CATACGGAGCTCATCCCCAGTCTA
34105126 AGATCGAATC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (26 bp):
CATACGGAGCTCATCCCCAGTCTATG
Found at i:34105437 original size:160 final size:160
Alignment explanation
Indices: 34105236--34105530 Score: 414
Period size: 160 Copynumber: 1.8 Consensus size: 160
34105226 GCGTCCGCAT
* * **
34105236 GCCCATTTCATGGGTTGGCTTAGACATAGGGAGTTCATTCCATGTCTAAGCCCCAGTTAG-ACCC
1 GCCCATTTCATGGGTTGGATTAGACATAGGGAGTCCATTCCATGTCTAAGCCCCA-ACAGAACCC
* * *
34105300 AGGGTTGTGGTAGTGAGATAGGCAGCACGCAGAGAGGGATCGGGCCGATCCCC-GACTTGCGCAT
65 AGGGTTATGGTAGTGAGATAGGCAACACGCAGAGAGGGATCGGGACGATCCCCAG-CTTGCGCAT
*
34105364 TCTGCCTTTCTGGCCGGCTGAGCGCGTCGTAC
129 TATGCCTTTCTGGCCGGCTGAGCGCGTCGTAC
* * **
34105396 GCCCATTTCATGGGTTGGATTAGGCATAGGGAGTCCATTCCATGTCTAAGCCCCAACCGAACTGA
1 GCCCATTTCATGGGTTGGATTAGACATAGGGAGTCCATTCCATGTCTAAGCCCCAACAGAACCCA
* * * *
34105461 GGGTTATGGTAGTGGGATCGGTAACACGCAGAGGGGGATCGGGACGATCCCCAGCTTGCGCATTA
66 GGGTTATGGTAGTGAGATAGGCAACACGCAGAGAGGGATCGGGACGATCCCCAGCTTGCGCATTA
34105526 TGCCT
131 TGCCT
34105531 CTCCGGTTGA
Statistics
Matches: 117, Mismatches: 16, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
159 1 0.01
160 115 0.98
161 1 0.01
ACGTcount: A:0.20, C:0.25, G:0.31, T:0.23
Consensus pattern (160 bp):
GCCCATTTCATGGGTTGGATTAGACATAGGGAGTCCATTCCATGTCTAAGCCCCAACAGAACCCA
GGGTTATGGTAGTGAGATAGGCAACACGCAGAGAGGGATCGGGACGATCCCCAGCTTGCGCATTA
TGCCTTTCTGGCCGGCTGAGCGCGTCGTAC
Found at i:34105766 original size:26 final size:26
Alignment explanation
Indices: 34105736--34105788 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34105726 GTTGGCTTAG
34105736 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
34105762 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
34105788 G
1 G
34105789 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:34106442 original size:158 final size:157
Alignment explanation
Indices: 34106201--34106674 Score: 479
Period size: 158 Copynumber: 3.0 Consensus size: 157
34106191 ACAGCAGGAT
* *
34106201 CGATAGCACGTAGGGGGGACTGGGCTGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTAA
1 CGATAGCACGTAGAGGGGAC-GGGCTGATCCCCGACTTGCGCATTCTGCCTCTCAGACCGGCTAA
*
34106266 GCGCCCGTACGC-CTATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCA
65 GCGCCCGCACGCTC-ATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCA
*
34106330 AGCCGAATCGAGGGTTGTGGCAATAAGAC
129 AGCCGAATCGAGGGTTGTGGCAGTAAGAC
* * * ** * * *
34106359 CGATATCACGTAGAGGGGATCGGGCCGATCCCCGGCTTATGCATTATGCCTCTTCAG-CCGGTTT
1 CGATAGCACGTAGAGGGGA-CGGGCTGATCCCCGACTTGCGCATTCTGCCTC-TCAGACCGGCTA
* * * ***
34106423 AGCACCCGCACGCTCATTTCGTGGGTTGACTTGGGCATACGGAGTTCATTCCCA-GTCTAATATC
64 AGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCC
* * * * *
34106487 AAACCGAATTGAGGGTT-TCGGTAGTAGGAT
128 AAGCCGAATCGAGGGTTGT-GGCAGTAAGAC
* * * * * * * * * * * **
34106517 TGGTAGCACGTAGAGGGGGCCAGGTTGGTCCCCTACTTGCACATTCTGCCTCTCTGATCGACCGA
1 CGATAGCACGTAGA-GGGGACGGGCTGATCCCCGACTTGCGCATTCTGCCTCTCAGACCGGCTAA
* * * *
34106582 GCGCCCGCACACTCATTTCATGGGTTGGCTTAGGCATACGGTGTTCATTCCATGTCTAAGCCCTA
65 GCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAA
* *
34106647 GTCGGATCGAGGGTTGTGGCAGTAAGAC
130 GCCGAATCGAGGGTTGTGGCAGTAAGAC
34106675 TGGTAGAAGG
Statistics
Matches: 247, Mismatches: 60, Indels: 18
0.76 0.18 0.06
Matches are distributed among these distances:
157 7 0.03
158 227 0.92
159 13 0.05
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (157 bp):
CGATAGCACGTAGAGGGGACGGGCTGATCCCCGACTTGCGCATTCTGCCTCTCAGACCGGCTAAG
CGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAAG
CCGAATCGAGGGTTGTGGCAGTAAGAC
Found at i:34106835 original size:26 final size:26
Alignment explanation
Indices: 34106799--34106851 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34106789 GTTGACTTAG
34106799 GCATACAGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
*
34106825 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
34106851 G
1 G
34106852 ATTGAACCTG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:34107206 original size:159 final size:156
Alignment explanation
Indices: 34106821--34107326 Score: 461
Period size: 159 Copynumber: 3.2 Consensus size: 156
34106811 CATCCCTAGT
* * *
34106821 CTAA-GCATACGGAGTTCATTCCCA-GTCTAAGATTGAACCTGACCGAGGGTTACGATAGTAGGA
1 CTAAGGCATACGGAGTTCATT-CCATGTCTAAGATCGAACCGGA-CGAGGGTTACGACAGTAGGA
* ** * *
34106884 TTGACAGCATGCAGGGGGGA-CTGGG-CTGATCCTTGGCTTGCACATTCTGCCTCTCTGGCTGGC
64 TCGACAGCACACAGGGGGGATC-GGGACTGATCCCTGGCTTGCACATTATGCCTCTCTGGCT-GC
* *
34106947 TGAATGCCCGTACACCT-ATTTCGTAGGTTGG
127 TGAGTGCCCG--CACCTCATTTCGTGGGTTGG
* * ** * * ** * * ** *
34106978 CTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAATCGGATCGAGGGTTGTGGCTGCGGGAC
1 CTAAGGCATACGGAGTTCATTCCATGTCTAAGATCGAACCGGA-CGAGGGTTACGACAGTAGGAT
* * *
34107043 CGACAGCACACAGAGGGGGATC-AGACTGATCCCTGGCTTGCACATTATGCGTCTTTGGCTAGCT
65 CGACAGCACACAG-GGGGGATCGGGACTGATCCCTGGCTTGCACATTATGCCTCTCTGGCT-GCT
* * *
34107107 CAGTGCCCGCACGCTCGTTTCGTGGGTTGA
128 GAGTGCCCGCAC-CTCATTTCGTGGGTTGG
*
34107137 CTAAGGCATACGGAGTTCATTCCCAT-TCTAAGATCGGACCGGACAGAGGGTTACGACAGTAGGA
1 CTAAGGCATACGGAGTTCATT-CCATGTCTAAGATCGAACCGGAC-GAGGGTTACGACAGTAGGA
* * * * * * *
34107201 TCGACAACACACAGGAGGGGATCGGGA-TGATCCCCGCCTTGCTCATTTTGCCTCTCCGACTGAC
64 TCGACAGCACACAGG-GGGGATCGGGACTGATCCCTGGCTTGCACATTATGCCTCTCTGGCTG-C
*
34107265 TGAGTGCCCGCACACTCATTTCATGGGTTGG
127 TGAGTGCCCGCAC-CTCATTTCGTGGGTTGG
* *
34107296 CTTAGGCATACAGAGTTCATTCCATGTCTAA
1 CTAAGGCATACGGAGTTCATTCCATGTCTAA
34107327 ACATATAGAG
Statistics
Matches: 274, Mismatches: 62, Indels: 24
0.76 0.17 0.07
Matches are distributed among these distances:
157 9 0.03
158 60 0.22
159 198 0.72
160 7 0.03
ACGTcount: A:0.22, C:0.25, G:0.28, T:0.25
Consensus pattern (156 bp):
CTAAGGCATACGGAGTTCATTCCATGTCTAAGATCGAACCGGACGAGGGTTACGACAGTAGGATC
GACAGCACACAGGGGGGATCGGGACTGATCCCTGGCTTGCACATTATGCCTCTCTGGCTGCTGAG
TGCCCGCACCTCATTTCGTGGGTTGG
Found at i:34107336 original size:26 final size:26
Alignment explanation
Indices: 34107302--34107352 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
34107292 TTGGCTTAGG
*
34107302 CATACAGAGTTCATTCCATGTCTAAA
1 CATACAGAGTTCATTCCAAGTCTAAA
*
34107328 CATATAGAGTTCATTCCAAGTCTAA
1 CATACAGAGTTCATTCCAAGTCTAA
34107353 GGTTTTGAGC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.35, C:0.22, G:0.12, T:0.31
Consensus pattern (26 bp):
CATACAGAGTTCATTCCAAGTCTAAA
Found at i:34113827 original size:26 final size:26
Alignment explanation
Indices: 34113798--34113850 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34113788 GTTGGCTTAG
34113798 GCATACGGAGCTCATTCC-ATGTCTAA
1 GCATACGGAGCTCATTCCTA-GTCTAA
*
34113824 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGCTCATTCCTAGTCTAA
34113850 G
1 G
34113851 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCTAGTCTAA
Found at i:34114196 original size:26 final size:25
Alignment explanation
Indices: 34114166--34114217 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 25
34114156 GTTGACTTAG
34114166 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCAT-CCCAGTCTAA
** *
34114192 GCATATGGAGTTCATTCCAGTCTAA
1 GCATACAGAGTTCATCCCAGTCTAA
34114217 G
1 G
34114218 ATTGGACCGA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 10 0.43
26 13 0.57
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (25 bp):
GCATACAGAGTTCATCCCAGTCTAA
Found at i:34114696 original size:26 final size:26
Alignment explanation
Indices: 34114667--34114719 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34114657 GTTGGCTTAG
34114667 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
34114693 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
34114719 G
1 G
34114720 ATTTTGAGCT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:34115393 original size:26 final size:26
Alignment explanation
Indices: 34115363--34115415 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34115353 GTTGACTTAG
34115363 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
**
34115389 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
34115415 G
1 G
34115416 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:34115750 original size:26 final size:25
Alignment explanation
Indices: 34115707--34115758 Score: 59
Period size: 26 Copynumber: 2.0 Consensus size: 25
34115697 GTTGACTTAG
*
34115707 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCAT-CCCAATCTAA
* * *
34115733 GCATATGGATTTCTTCCCAATCTAA
1 GCATACGGAGTTCATCCCAATCTAA
34115758 G
1 G
34115759 ATCAGACCGG
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
25 10 0.45
26 12 0.55
ACGTcount: A:0.27, C:0.27, G:0.17, T:0.29
Consensus pattern (25 bp):
GCATACGGAGTTCATCCCAATCTAA
Found at i:34116108 original size:159 final size:159
Alignment explanation
Indices: 34115830--34116247 Score: 443
Period size: 159 Copynumber: 2.6 Consensus size: 159
34115820 GGACGTGGCT
* * * ** * *
34115830 GATCCTCGGCTTACGCATTCTGCCTCTTTGGCCGGCTGAGCAACCGCATGCCCGTTTCGTGGGTT
1 GATCCCCGGCTTGCGCATTCTGCCTCTTCGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
* * * *
34115895 GGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCCAGTCGGCCAGAGGGTTGTGGCAGCGG
66 GGCTTAGGCATACGGAGTTCATTCCCAGGTCTAAGCCCCAGTCGACCAGAGGGTTGTGGCAGCAG
* **
34115959 GACCGACAGCACGTAGAGGGGGA-CTGGGCC
131 GACCGACAGCACGCAG-GGGGGATC-GACCC
* * *
34115989 GATCCCCGGTTTGCGCATTATGCCTCTTCGGCCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTT
1 GATCCCCGGCTTGCGCATTCTGCCTCTTCGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
* * * * ** * * *
34116054 GACTTATGCATACAGAGTTGATTCCCA-GTCTAAG-ATCGGATCAGACCA-AGGGTTGTGGTAGT
66 GGCTTAGGCATACGGAGTTCATTCCCAGGTCTAAGCCCCAG-TC-GACCAGAGGGTTGTGGCAGC
* * *
34116116 AGGATCGATAGCATGCAGGGGGGATCGACCC
129 AGGACCGACAGCACGCAGGGGGGATCGACCC
** * * *
34116147 GATCCTTGGCTTGCACATTCTGCCTCTCCGGCCGACTGAGCGCCCGCACAG-TCGTTTCGTGGGT
1 GATCCCCGGCTTGCGCATTCTGCCTCTTCGGCCGGCTGAGCGCCCGCAC-GCTCGTTTCGTGGGT
34116211 TGGCTTAGGCATACGGAGTTCATTCCCAGGTCTAAGC
65 TGGCTTAGGCATACGGAGTTCATTCCCAGGTCTAAGC
34116248 ATACGGAGTT
Statistics
Matches: 212, Mismatches: 40, Indels: 13
0.80 0.15 0.05
Matches are distributed among these distances:
158 89 0.42
159 116 0.55
160 7 0.03
ACGTcount: A:0.17, C:0.28, G:0.31, T:0.24
Consensus pattern (159 bp):
GATCCCCGGCTTGCGCATTCTGCCTCTTCGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
GGCTTAGGCATACGGAGTTCATTCCCAGGTCTAAGCCCCAGTCGACCAGAGGGTTGTGGCAGCAG
GACCGACAGCACGCAGGGGGGATCGACCC
Found at i:34116257 original size:27 final size:26
Alignment explanation
Indices: 34116219--34116272 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 26
34116209 GTTGGCTTAG
34116219 GCATACGGAGTTCATTCCCAGGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
34116246 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
34116272 G
1 G
34116273 ATTTTGAGCC
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
26 7 0.26
27 20 0.74
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:34117806 original size:26 final size:26
Alignment explanation
Indices: 34117770--34117822 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34117760 GTTGGCTTAG
34117770 GCATACGGAGTTCATTCCCAGACTAA
1 GCATACGGAGTTCATTCCCAGACTAA
* *
34117796 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGACTAA
34117822 G
1 G
34117823 ATCAGAACGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGACTAA
Found at i:34118281 original size:158 final size:158
Alignment explanation
Indices: 34117796--34118296 Score: 503
Period size: 158 Copynumber: 3.2 Consensus size: 158
34117786 CCCAGACTAA
*
34117796 GCATATGGAGTTCATTCCCA-GTCTAAGATCAGAACGGACCGAGGGTTGCGGCAACAGGATCGAC
1 GCATATGGAGTTCATT-CCATGTCTAAGATCAGAACGGACCGAGGGTTGCGGCAGCAGGATCGAC
* * * * * * * * * * *
34117860 AGTACGCAGGGGGGATCA-GGTCGATCCCCGACTTGCGCATTCTACCTCTCTGGCCAGTTGACCG
65 AGCACGCAGGGGGGAT-AGGGCCGATCCCTGGCTTGCGCATTATGCCTCTCCGGTCGGCTGAACG
*
34117924 CCC-ACACGCCCGTTTCGTGGGTTGGCTTAG
129 CCCGA-ACGCCCGTTTCGTGGGTTGGCTTAT
* * * * * *
34117954 GCACAAGGAGTTCATTCCATGTCTAA-ACCCCAG-TCGGACCGAGGGTTGTGGCAGCAGGACCGA
1 GCATATGGAGTTCATTCCATGTCTAAGA--TCAGAACGGACCGAGGGTTGCGGCAGCAGGATCGA
** ** * * * *
34118017 CAGCACGCAGAGGGGGACCGGGCTAAT-CCTCAGCTTGCACATTATGCCTCTTCGGTCGGCTCAA
64 CAGCACGCAG-GGGGGATAGGGCCGATCCCT-GGCTTGCGCATTATGCCTCTCCGGTCGGCTGAA
* * * *
34118081 CACCCGTACGCTCGTTTCGTGGGTTGACTTAT
127 CGCCCGAACGCCCGTTTCGTGGGTTGGCTTAT
* * * * *
34118113 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGACCAGATCGAGGGTTGCAGCAGCAGGATCGAC
1 GCATATGGAGTTCATT-CCATGTCTAAGATCAGAACGGACCGAGGGTTGCGGCAGCAGGATCGAC
* * * *
34118177 AGCATGCAGGGGGGATAGGGCCGATCCCTGGCTTGTGCATTTTGCCTCTCCGATCGGCTGAACGC
65 AGCACGCAGGGGGGATAGGGCCGATCCCTGGCTTGCGCATTATGCCTCTCCGGTCGGCTGAACGC
* *
34118242 CCGAACGCCCGTTTCATGGGCTGGCTTAT
130 CCGAACGCCCGTTTCGTGGGTTGGCTTAT
34118271 GCATATGGAGTTCATTCCATGTCTAA
1 GCATATGGAGTTCATTCCATGTCTAA
34118297 ACATACGGAG
Statistics
Matches: 272, Mismatches: 59, Indels: 24
0.77 0.17 0.07
Matches are distributed among these distances:
157 7 0.03
158 145 0.53
159 116 0.43
160 4 0.01
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.23
Consensus pattern (158 bp):
GCATATGGAGTTCATTCCATGTCTAAGATCAGAACGGACCGAGGGTTGCGGCAGCAGGATCGACA
GCACGCAGGGGGGATAGGGCCGATCCCTGGCTTGCGCATTATGCCTCTCCGGTCGGCTGAACGCC
CGAACGCCCGTTTCGTGGGTTGGCTTAT
Found at i:34118306 original size:26 final size:26
Alignment explanation
Indices: 34118272--34118322 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
34118262 CTGGCTTATG
*
34118272 CATATGGAGTTCATT-CCATGTCTAAA
1 CATACGGAGTTCATTCCCA-GTCTAAA
34118298 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
34118323 GATTTTAAGC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.31
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAA
Found at i:34120266 original size:26 final size:26
Alignment explanation
Indices: 34120237--34120289 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34120227 GTTGGCTTAG
34120237 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
34120263 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
34120289 G
1 G
34120290 ATTTTGAGCT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:34120968 original size:25 final size:26
Alignment explanation
Indices: 34120932--34120983 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
34120922 GTTGACTTAG
34120932 GCATACGAAGTTCA-TCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* *
34120957 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
34120983 G
1 G
34120984 ATCGGATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 13 0.54
26 11 0.46
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:34121677 original size:159 final size:158
Alignment explanation
Indices: 34121377--34121814 Score: 440
Period size: 159 Copynumber: 2.8 Consensus size: 158
34121367 CAAGATCGGT
* * * ** * * *
34121377 AGCACGCAGATGGGACCGGGCTGATCCCCAGCTTGTGTATTCTGCCTCTTTGG-TCGGCTGAGCA
1 AGCACGCAGAGGGGACTGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTTTGGCT-GGCTGAGCG
* * *
34121441 CCCGCACACCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTC
65 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTC
* *
34121506 GGCCAGAGGGTTGTGGCAGCGGGATCGAC
130 GACCAGAGGGTTGTGGCAGCAGGATCGAC
* *
34121535 AGCACGCAGAAGGGGACTGGGCCGATCCCTGGCTTGCGCATTATGCCTCTTTGGCTGGCTCAGCG
1 AGCACGCAG-AGGGGACTGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTTTGGCTGGCTGAGCG
** * * ** *
34121600 CCCGCACGCTCGTTTCGTGGGTTCACTTACGCATACGGAGTTGATTCCCA-GTCTAAG-ATCGGA
65 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAG-
* * *
34121663 TCAGACCA-AGGGTTGTGGTAGTAGGATCGAT
128 TC-GACCAGAGGGTTGTGGCAGCAGGATCGAC
* ** * * ** *
34121694 AGCACGCAGGGGGGA-TCGACCCGATCCTTGGCTTGCACATTCTGCCTCTCCGGCTGACTGAGCG
1 AGCACGCAGAGGGGACT-GGGCCGATCCCTGGCTTGCGCATTCTGCCTCTTTGGCTGGCTGAGCG
* * *
34121758 CCTGCACAG-TCGTTTCGT-GGTTGGCTTAGGCATACGGAGTTCATTTCATGTATAAGC
65 CCCGCAC-GCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
34121815 ATACGGAGTT
Statistics
Matches: 229, Mismatches: 42, Indels: 18
0.79 0.15 0.06
Matches are distributed among these distances:
156 2 0.01
157 30 0.13
158 69 0.30
159 120 0.52
160 8 0.03
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.25
Consensus pattern (158 bp):
AGCACGCAGAGGGGACTGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTTTGGCTGGCTGAGCGC
CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCG
ACCAGAGGGTTGTGGCAGCAGGATCGAC
Found at i:34123046 original size:26 final size:26
Alignment explanation
Indices: 34122997--34123049 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
34122987 GTTGGGTTAG
*
34122997 GCATACAGAGTTCATTGCATGTCTAA
1 GCATACAGAGTTCATTCCATGTCTAA
*
34123023 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACAGAGTTCATT-CCATGTCTAA
34123049 G
1 G
34123050 ATCGGACGGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGTCTAA
Found at i:34123358 original size:26 final size:26
Alignment explanation
Indices: 34123322--34123374 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34123312 GTTGGCTTAG
34123322 GCATACGGAGTTCATTCCCAGACTAA
1 GCATACGGAGTTCATTCCCAGACTAA
* *
34123348 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGACTAA
34123374 G
1 G
34123375 ATCGGAACGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGACTAA
Found at i:34123681 original size:159 final size:156
Alignment explanation
Indices: 34123483--34123848 Score: 373
Period size: 159 Copynumber: 2.3 Consensus size: 156
34123473 CCGCCCACAT
* * * *
34123483 GCCCGTTTCGTGGGTTGGCTTAGGCACAAGGAGTTCATTCCATGTCTAAACCCCAG-TCGGACCG
1 GCCCGTTTCGTGGGTTGGCTTATGCATAAGGAGTTCATTCCATGTCTAAA-CCCAGACCAGACCG
** * *
34123547 AGGGTTGTGGCAGCAGGACCGACAGCACGCAGAGGGGGACCGGGCTAAT-CCTCAGCTTGCACAT
65 AGGGTTGCAGCAGCAGGACCGACAGCACGC--AGGGGGACAGGGCCAATCCCT-AGCTTGCACAT
* *
34123611 TATGCCTCTTCGGTCGGCTCAACACCCG-TAC
127 TATGCCTC-TCGATCGGCTCAAC-CCCGCAAC
* * * * *
34123642 GCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCA-GTCTAAGA-TCAGACCAGATC
1 GCCCGTTTCGTGGGTTGGCTTATGCATAAGGAGTTCATT-CCATGTCTAA-ACCCAGACCAGACC
* * * * * ** *
34123705 GAGGGTTGCAGCAGCAGGATCGACAGCATGCAGGGGGATAGGGCCGATCCCTGGCTTGTGCATTT
64 GAGGGTTGCAGCAGCAGGACCGACAGCACGCAGGGGGACAGGGCCAATCCCTAGCTTGCACATTA
* *
34123770 TGCCTCTCGATCGGCTGAACGCCGCAAC
129 TGCCTCTCGATCGGCTCAACCCCGCAAC
* * *
34123798 GCCCGTTTCATGGGCTGGCTTATGCATATGGAGTTCATTCCATGTCTAAAC
1 GCCCGTTTCGTGGGTTGGCTTATGCATAAGGAGTTCATTCCATGTCTAAAC
34123849 ATACGGAGTT
Statistics
Matches: 170, Mismatches: 30, Indels: 17
0.78 0.14 0.08
Matches are distributed among these distances:
155 7 0.04
156 54 0.32
157 28 0.16
158 6 0.04
159 71 0.42
160 4 0.02
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (156 bp):
GCCCGTTTCGTGGGTTGGCTTATGCATAAGGAGTTCATTCCATGTCTAAACCCAGACCAGACCGA
GGGTTGCAGCAGCAGGACCGACAGCACGCAGGGGGACAGGGCCAATCCCTAGCTTGCACATTATG
CCTCTCGATCGGCTCAACCCCGCAAC
Found at i:34123856 original size:26 final size:26
Alignment explanation
Indices: 34123822--34123872 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
34123812 CTGGCTTATG
*
34123822 CATATGGAGTTCATT-CCATGTCTAAA
1 CATACGGAGTTCATTCCCA-GTCTAAA
34123848 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
34123873 GATTTTAAGC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.31
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAA
Found at i:34124837 original size:171 final size:171
Alignment explanation
Indices: 34124515--34124843 Score: 391
Period size: 171 Copynumber: 1.9 Consensus size: 171
34124505 TGAACTCTTG
* **
34124515 CACGCTCGTTTCATGGTTTGGCTTAGGCATACAGAGTTCATTCCTAATCTAAGTTCAGATCGGAC
1 CACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCTAATCTAAGCGCAGATCGGAC
* * * * * * *
34124580 CGAGGGTTGTGGTAGTAAGACCAGCAGCAGGATCGACAGCATGTAAGGGAGGACCAGGTCGATCC
66 CGAGGGTTGTGGCAGCAAGACCAACAGCAGGATCGACAGCACGCAAGGGAGGACCAGCTCAATCC
* *
34124645 TCGACATGCGCATTCTACCTCTCCGGCCGACTGAGCGCCCA
131 TCGACATGCACATTATACCTCTCCGGCCGACTGAGCGCCCA
* *
34124686 CACGCTCGTTTCGTGGGTTGGCTTAGGCATAC-GAAGTTCATTCC-ATGTCTAAGCCGCAG-TCG
1 CACGCTCGTTTCATGGGTTGGCTTAGGCATACAG-AGTTCATTCCTA-ATCTAAG-CGCAGATCG
* *
34124748 GACCGAGGGTTGTGGCAGCAAGACCAACAGCGGGATCGACGGCACGCAGAGGG-GGACCGAGCT-
63 GACCGAGGGTTGTGGCAGCAAGACCAACAGCAGGATCGACAGCACGCA-AGGGAGGACC-AGCTC
* * *
34124811 AATCC-CTGGCTTGCACATTATACCTCTTCGGCC
126 AATCCTC-GACATGCACATTATACCTCTCCGGCC
34124844 AGCCTCTCTG
Statistics
Matches: 133, Mismatches: 19, Indels: 12
0.81 0.12 0.07
Matches are distributed among these distances:
170 3 0.02
171 120 0.90
172 10 0.08
ACGTcount: A:0.22, C:0.27, G:0.29, T:0.22
Consensus pattern (171 bp):
CACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCTAATCTAAGCGCAGATCGGAC
CGAGGGTTGTGGCAGCAAGACCAACAGCAGGATCGACAGCACGCAAGGGAGGACCAGCTCAATCC
TCGACATGCACATTATACCTCTCCGGCCGACTGAGCGCCCA
Found at i:34124932 original size:26 final size:26
Alignment explanation
Indices: 34124896--34124948 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
34124886 GTTGATTTTG
34124896 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
34124922 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
34124948 G
1 G
34124949 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:34125571 original size:26 final size:26
Alignment explanation
Indices: 34125535--34125587 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34125525 GTTGACTTTG
*
34125535 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATAAGGAGTTCATCCCCAGTCTAA
*
34125561 GCATAAGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATCCCCAGTCTAA
34125587 G
1 G
34125588 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATAAGGAGTTCATCCCCAGTCTAA
Found at i:34125932 original size:159 final size:158
Alignment explanation
Indices: 34125561--34125952 Score: 394
Period size: 159 Copynumber: 2.5 Consensus size: 158
34125551 CCCAGTCTAA
* * * * *
34125561 GCATAAGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGTAGGATCGGCC
1 GCATAAGGAGTTCA-TCCCAGTCTAAGATCGAATCGGACCGAGGGTTGCGGCAGTAGGATCGACA
* * * *
34125626 GCACGCAGGGGGGACCGGAGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCTGCTGAACGC
65 GCACGCAGGGGGGACCGGAGTCGATCCCCGACTTGCGCATTATGCCTCTCCGACCTGCTCAACAC
* *
34125691 CCGCACGCTCGTTTCATGGGTTGGCTTAG
130 CCGCACACTCGTTTCATGGGTTGACTTAG
* * * * * * * *
34125720 GCATAGGGAGTTCATTCCATGTCTAAGCCTC-AGTCGAACCGAGGGTTGTGGCAGTGGGATCGAT
1 GCATAAGGAGTTCATCCCA-GTCTAAG-ATCGAATCGGACCGAGGGTTGCGGCAGTAGGATCGAC
* * * ** *
34125784 AGCATGCAGAGGGGGACCGG-GTCGATCCTCGACTTGCGCATTATGTCTCTCCG-GTTGGCTCAG
64 AGCACGCAG-GGGGGACCGGAGTCGATCCCCGACTTGCGCATTATGCCTCTCCGACCT-GCTCAA
*
34125847 CACCCGCACACTCGTTTCGTGGGTTGACTTAG
127 CACCCGCACACTCGTTTCATGGGTTGACTTAG
* * ** * * * *
34125879 GCATACGGAGTTCATCCCCAGCCTAAGATCGAATCGGACTAAGGCTTGCGGCAGCAGAATTGACA
1 GCATAAGGAGTTCAT-CCCAGTCTAAGATCGAATCGGACCGAGGGTTGCGGCAGTAGGATCGACA
*
34125944 ACACGCAGG
65 GCACGCAGG
34125953 CTGGTCCCCG
Statistics
Matches: 184, Mismatches: 43, Indels: 13
0.77 0.18 0.05
Matches are distributed among these distances:
158 8 0.04
159 161 0.88
160 15 0.08
ACGTcount: A:0.20, C:0.28, G:0.31, T:0.21
Consensus pattern (158 bp):
GCATAAGGAGTTCATCCCAGTCTAAGATCGAATCGGACCGAGGGTTGCGGCAGTAGGATCGACAG
CACGCAGGGGGGACCGGAGTCGATCCCCGACTTGCGCATTATGCCTCTCCGACCTGCTCAACACC
CGCACACTCGTTTCATGGGTTGACTTAG
Found at i:34126063 original size:26 final size:26
Alignment explanation
Indices: 34126027--34126079 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
34126017 GTTGGCTTAG
*
34126027 GCATACAGAGTTCGTT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
34126053 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
34126079 G
1 G
34126080 ATCGGACTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:34126444 original size:26 final size:26
Alignment explanation
Indices: 34126408--34126460 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34126398 GTGGACTTAG
*
34126408 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
34126434 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
34126460 G
1 G
34126461 ATTGAATTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:34126735 original size:159 final size:158
Alignment explanation
Indices: 34126473--34126937 Score: 432
Period size: 159 Copynumber: 2.9 Consensus size: 158
34126463 TGAATTGAAT
* * * * * ** ** * *
34126473 CGAGGGTTATGGCAGCAGGATCGACAGCACGTAGGGGGGACTGGGCTGATCCCCGGCTTACGCAT
1 CGAGGGTTACGGTAGCAAGATCGACAGCACGCAAGGGGGACCAGGCCAATCCCCAGCTTGCGCAT
* * * * * ** * *
34126538 TCTGCCTCTCCGATCAGTTGAGCACTCGCACGCTCGTTTCGTGGGTTGGCTTGGGCATAGGGAGT
66 TATGCCTCTTCGATCGGCTGAGCACCCATACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGT
*
34126603 TCATTCCATGTCTAAGCCCCAG-CCAGAC
131 TCATTCCATGTCTAAGCACCAGACC-GAC
** *** ** * * * **
34126631 CGAGGGTTGTGGTAGTGGGATCGGTAGCACGCAAAGGGGGATCGGGCCGATCCCTGGCTTGCGCA
1 CGAGGGTTACGGTAGCAAGATCGACAGCACGC-AAGGGGGACCAGGCCAATCCCCAGCTTGCGCA
* * * * *
34126696 TTATGCCTTTTCGGTCGGCTTAGCACCCATACGCTCGTTTCGTGGGTTGACTTATGCATACGGAG
65 TTATGCCTCTTCGATCGGCTGAGCACCCATACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAG
*
34126761 TTCATTCCCA-GTCTAA-CATCAGATCCGAC
130 TTCATT-CCATGTCTAAGCACCAGA-CCGAC
*
34126790 CGAGGGTTACGGTAGCAAGATCGACAGCACGCAGGGGGGACCAGGCCAATCCCCAGCTTGCGCAT
1 CGAGGGTTACGGTAGCAAGATCGACAGCACGCAAGGGGGACCAGGCCAATCCCCAGCTTGCGCAT
* * * * * * * * *
34126855 TTTGCCTCTTCGATCGGCTGATCGCCCGTACGCTTGTTTCATGCGTTGGTTTAGGCATACAGAGT
66 TATGCCTCTTCGATCGGCTGAGCACCCATACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGT
34126920 TCATTCCATGTCTAAGCA
131 TCATTCCATGTCTAAGCA
34126938 TACGGAGTTC
Statistics
Matches: 245, Mismatches: 56, Indels: 11
0.79 0.18 0.04
Matches are distributed among these distances:
157 3 0.01
158 118 0.48
159 119 0.49
160 5 0.02
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.25
Consensus pattern (158 bp):
CGAGGGTTACGGTAGCAAGATCGACAGCACGCAAGGGGGACCAGGCCAATCCCCAGCTTGCGCAT
TATGCCTCTTCGATCGGCTGAGCACCCATACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGT
TCATTCCATGTCTAAGCACCAGACCGAC
Found at i:34126914 original size:158 final size:158
Alignment explanation
Indices: 34126473--34126934 Score: 480
Period size: 158 Copynumber: 2.9 Consensus size: 158
34126463 TGAATTGAAT
* * * * *
34126473 CGAGGGTTATGGCAGCAGGATCGACAGCACGTAGGGGGGACTGGGCTGATCCCCGGCTTACGCAT
1 CGAGGGTTATGGTAGCAGGATCGACAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCAT
* * * * * * * **
34126538 TCTGCCTCTCCGATCAGTTGAGCACTCGCACGCTCGTTTCGTGGGTTGGCTTGGGCATAGGGAGT
66 TATGCCTCTTCGATCGGCTGAGCACCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGT
**
34126603 TCATTCCATGTCTAAGCCCCAG--CCAGAC
131 TCATTCCATGTCTAA-CATCAGATCC-GAC
* ** ** * * *
34126631 CGAGGGTTGTGGTAGTGGGATCGGTAGCACGCAAAGGGGGATCGGGCCGATCCCTGGCTTGCGCA
1 CGAGGGTTATGGTAGCAGGATCGACAGCACGC-AGGGGGGACCGGGCCGATCCCCGGCTTGCGCA
* * * * * * *
34126696 TTATGCCTTTTCGGTCGGCTTAGCACCCATACGCTCGTTTCGTGGGTTGACTTATGCATACGGAG
65 TTATGCCTCTTCGATCGGCTGAGCACCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAG
34126761 TTCATTCCCA-GTCTAACATCAGATCCGAC
130 TTCATT-CCATGTCTAACATCAGATCCGAC
* * * * *
34126790 CGAGGGTTACGGTAGCAAGATCGACAGCACGCAGGGGGGACCAGGCCAATCCCCAGCTTGCGCAT
1 CGAGGGTTATGGTAGCAGGATCGACAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCAT
* * * * * * *
34126855 TTTGCCTCTTCGATCGGCTGATCGCCCGTACGCTTGTTTCATGCGTTGGTTTAGGCATACAGAGT
66 TATGCCTCTTCGATCGGCTGAGCACCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGT
34126920 TCATTCCATGTCTAA
131 TCATTCCATGTCTAA
34126935 GCATACGGAG
Statistics
Matches: 243, Mismatches: 56, Indels: 10
0.79 0.18 0.03
Matches are distributed among these distances:
157 3 0.01
158 118 0.49
159 117 0.48
160 5 0.02
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.25
Consensus pattern (158 bp):
CGAGGGTTATGGTAGCAGGATCGACAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCAT
TATGCCTCTTCGATCGGCTGAGCACCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGT
TCATTCCATGTCTAACATCAGATCCGAC
Found at i:34126939 original size:26 final size:26
Alignment explanation
Indices: 34126909--34126961 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34126899 GTTGGTTTAG
34126909 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
34126935 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
34126961 G
1 G
34126962 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:34128036 original size:25 final size:26
Alignment explanation
Indices: 34127998--34128050 Score: 81
Period size: 25 Copynumber: 2.1 Consensus size: 26
34127988 GTATAAGATT
*
34127998 GGATCAGACTGAGGGTTGTGGCAGCA
1 GGATCAGACTGAGGGTTGCGGCAGCA
*
34128024 GGATCGGA-TGAGGGTTGCGGCAGCA
1 GGATCAGACTGAGGGTTGCGGCAGCA
34128049 GG
1 GG
34128051 GGGGACTAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 18 0.72
26 7 0.28
ACGTcount: A:0.21, C:0.15, G:0.47, T:0.17
Consensus pattern (26 bp):
GGATCAGACTGAGGGTTGCGGCAGCA
Found at i:34128184 original size:26 final size:26
Alignment explanation
Indices: 34128135--34128187 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
34128125 GTTGGCTTAG
* *
34128135 GCATACGGAGTTCATTGCATGTCTAA
1 GCATACGAAGTTCATTCCATGTCTAA
34128161 GCATACGAAGTTCATTCCCA-GTCTAA
1 GCATACGAAGTTCATT-CCATGTCTAA
34128187 G
1 G
34128188 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATGTCTAA
Found at i:34128534 original size:26 final size:26
Alignment explanation
Indices: 34128504--34128555 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
34128494 TTGACTTAGA
*
34128504 CATACGGAGTTCATCCCCTATCTAAG
1 CATACGGAGTTCATCCCCAATCTAAG
*
34128530 CATACGGAGTTCATTCCCAATCTAAG
1 CATACGGAGTTCATCCCCAATCTAAG
34128556 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAATCTAAG
Found at i:34129033 original size:26 final size:26
Alignment explanation
Indices: 34129004--34129056 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
34128994 GTTGGCTTAG
34129004 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
**
34129030 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
34129056 G
1 G
34129057 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:34130094 original size:159 final size:157
Alignment explanation
Indices: 34129760--34130094 Score: 361
Period size: 159 Copynumber: 2.1 Consensus size: 157
34129750 AAGGAAATGA
* * * *
34129760 AGTTCATTCCCAGTGTAAGATTAGACCAAACCGAGGGTTGCGGCAGCAGGTTCGACAGCATGCAG
1 AGTTCATT-CCAGTCTAAAATCAGACCAAACCGAGGGTTGCGGCAGCAGGTTCGACAGCACGCAG
* * * * *
34129825 GGGGGACCGGGCCGATCTCAGGCTTGCACATTCTACCTCTCCGGCTGGCTAAGTGCACGCACGCC
65 GGGGGACCAGGCCGATCTCAGGCGTGCACATTCTACCTCTCCGGCTGACTAAGCGCACGCACACC
* *
34129890 CGTTTCATGAGTTGACTTAGGCATACGG
130 CATTTCATGAGTTGACTTAGGCATACAG
* * * *
34129918 AGTTCATTTCCAATCTAAAATCAGACCAGACCGAGGGTTGGGGCCGCAGGATT-GACAGCACGCA
1 AGTTCA-TTCCAGTCTAAAATCAGACCAAACCGAGGGTTGCGGCAGCAGG-TTCGACAGCACGCA
* * * * * *
34129982 GGGGGGGACCAGTCCGATCCTC-GGCGTGCGCATTCTGCCTCTCTGG-TCGACTGAGCGCCCGCA
64 -GGGGGGACCAGGCCGAT-CTCAGGCGTGCACATTCTACCTCTCCGGCT-GACTAAGCGCACGCA
* * * *
34130045 CACTCATTTCGTGGGTTGGCTTAGGCATACAG
126 CACCCATTTCATGAGTTGACTTAGGCATACAG
34130077 AGTTCATTCCATGTCTAA
1 AGTTCATTCCA-GTCTAA
34130095 GCATACGGAG
Statistics
Matches: 145, Mismatches: 26, Indels: 11
0.80 0.14 0.06
Matches are distributed among these distances:
158 56 0.39
159 86 0.59
160 3 0.02
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.22
Consensus pattern (157 bp):
AGTTCATTCCAGTCTAAAATCAGACCAAACCGAGGGTTGCGGCAGCAGGTTCGACAGCACGCAGG
GGGGACCAGGCCGATCTCAGGCGTGCACATTCTACCTCTCCGGCTGACTAAGCGCACGCACACCC
ATTTCATGAGTTGACTTAGGCATACAG
Found at i:34130105 original size:26 final size:26
Alignment explanation
Indices: 34130069--34130121 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
34130059 GTTGGCTTAG
*
34130069 GCATACAGAGTTCA-TTCCATGTCTAA
1 GCATACAGAGTTCAGTCCCA-GTCTAA
*
34130095 GCATACGGAGTTCAGTCCCAGTCTAA
1 GCATACAGAGTTCAGTCCCAGTCTAA
34130121 G
1 G
34130122 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCAGTCCCAGTCTAA
Found at i:34130222 original size:185 final size:185
Alignment explanation
Indices: 34129910--34130281 Score: 478
Period size: 185 Copynumber: 2.0 Consensus size: 185
34129900 GTTGACTTAG
* * *** * *
34129910 GCATACGGAGTTCATTTCCAATCTAAAATCAGACCAGACCGAGGGTTGGGGCCGCAGGATTGACA
1 GCATACGGAGTTCAGTCCCAATCTAAAATCAGACCAGACCGAGGGTTGAAACAGCAGGATCGACA
* * * *
34129975 GCACGCAGGGGGGGACCAGTCCGATCCTCGGCGTGCGCATTCTGCCTCTCTGGTCGACTGAGCGC
66 GCACGCAGGGGGGGACCAGTCCGATCCTCAGCGTGCACATTCTACCTCTCCGGTCGACTGAGCGC
*
34130040 CCGCACACTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
131 CCGCACACTCATTTCGTGGGTTGGCTTAAGCATACAGAGTTCATTCCATGTCTAA
* * * **
34130095 GCATACGGAGTTCAGTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGAAATAGCAGGATCGGTA
1 GCATACGGAGTTCAGTCCCAATCTAAAATCAGACCAGACCGAGGGTTGAAACAGCAGGATCGACA
* ** *
34130160 GCACGTAGGGGGGGATTGAG-CCGATCC-CTAGCTTGCACATTCTACCTCTCCGGTCGACTGAGC
66 GCACGCAGGGGGGGA-CCAGTCCGATCCTC-AGCGTGCACATTCTACCTCTCCGGTCGACTGAGC
* * * * *
34130223 GCCTGCACGCTCGTTTCGTGGGTTGGCTTAATCATACGGAGTTCATTCCATGTCTAA
129 GCCCGCACACTCATTTCGTGGGTTGGCTTAAGCATACAGAGTTCATTCCATGTCTAA
34130280 GC
1 GC
34130282 CTAGCCGGAC
Statistics
Matches: 159, Mismatches: 26, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
184 1 0.01
185 156 0.98
186 2 0.01
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.23
Consensus pattern (185 bp):
GCATACGGAGTTCAGTCCCAATCTAAAATCAGACCAGACCGAGGGTTGAAACAGCAGGATCGACA
GCACGCAGGGGGGGACCAGTCCGATCCTCAGCGTGCACATTCTACCTCTCCGGTCGACTGAGCGC
CCGCACACTCATTTCGTGGGTTGGCTTAAGCATACAGAGTTCATTCCATGTCTAA
Found at i:34131254 original size:256 final size:256
Alignment explanation
Indices: 34130896--34131397 Score: 621
Period size: 256 Copynumber: 2.0 Consensus size: 256
34130886 GGATCGAGGG
* * *
34130896 TTGTGGTAGCGGGACCGACAGCACGCAGAGGGGGACTGACCTGATCCCCAGCTTGCGCATTATGC
1 TTGTGGTAGCGAGACCGACAGCACGCAGAGGGGGACCGACCTGATCCCCAGCTTACGCATTATGC
* ** * * * * **
34130961 CTTTTCGGCCGACTCAGCGCCCGTACGCTCGTTTCGTGTGTTGGCTTAGGCATATGGAGTTCATT
66 CTCTTCGGCCGACTCAGCGCCCACACGCTCATTTCGTGGGTTGACTTAAGCATACAGAGTTCATT
* * * * *
34131026 CCCAGTCTAAGATCAGAGCAGATCAAGGGTTGCAGTAGCAAGATCAACAGCACGCAGGGGGGACC
131 CCCAGTCTAAGATCAGACCAAACCAAGGGTTGCAGTAGCAAGATCAACAACACGCAGGGGCGACC
* *
34131091 AGGCCAGT-CCTCGGCTTGCACATTCTGCCT-TTACAGTTGGCTGAGCGCCCGTAAGCTAGTT
196 AGGCCAATCCCT-GGCTTGCACATTCTGCCTCTT-CAGTCGGCTGAGCGCCCGTAAGCTAGTT
* * * ** * *
34131152 TTGTGGTTGCGAGACCGATAGCATGCAGAGGGGGACCGGGCTGATCCCCGGCTTACGCATTATGG
1 TTGTGGTAGCGAGACCGACAGCACGCAGAGGGGGACCGACCTGATCCCCAGCTTACGCATTATGC
* * *
34131217 CTCTTCGGCTGGCTCAGCGCCTACACGCTCATTTCGTGGGTTGACTTAAGCATACAGAGTTCATT
66 CTCTTCGGCCGACTCAGCGCCCACACGCTCATTTCGTGGGTTGACTTAAGCATACAGAGTTCATT
* * * * * * *
34131282 CCTAGTCTAAGATCGGACCAAACCGAGGGTTGCGGTAGCAGGATCAACAACATGCAGGGGCGATC
131 CCCAGTCTAAGATCAGACCAAACCAAGGGTTGCAGTAGCAAGATCAACAACACGCAGGGGCGACC
* * *
34131347 GGGCCAATCCCTGGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGCGCCCG
196 AGGCCAATCCCTGGCTTGCACATTCTGCCTCTTCAGTCGGCTGAGCGCCCG
34131398 CATGCTCGTT
Statistics
Matches: 205, Mismatches: 39, Indels: 4
0.83 0.16 0.02
Matches are distributed among these distances:
256 200 0.98
257 5 0.02
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (256 bp):
TTGTGGTAGCGAGACCGACAGCACGCAGAGGGGGACCGACCTGATCCCCAGCTTACGCATTATGC
CTCTTCGGCCGACTCAGCGCCCACACGCTCATTTCGTGGGTTGACTTAAGCATACAGAGTTCATT
CCCAGTCTAAGATCAGACCAAACCAAGGGTTGCAGTAGCAAGATCAACAACACGCAGGGGCGACC
AGGCCAATCCCTGGCTTGCACATTCTGCCTCTTCAGTCGGCTGAGCGCCCGTAAGCTAGTT
Found at i:34131454 original size:26 final size:26
Alignment explanation
Indices: 34131424--34131476 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
34131414 GTTGGCTTAG
*
34131424 GCATACGGAGTTCATTCCATGTCTAA
1 GCATAAGGAGTTCATTCCATGTCTAA
* *
34131450 GCATAAGGAGTTTATTCCCTGTCTAA
1 GCATAAGGAGTTCATTCCATGTCTAA
34131476 G
1 G
34131477 ATCAGACAGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCATGTCTAA
Found at i:34133053 original size:26 final size:26
Alignment explanation
Indices: 34133023--34133075 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
34133013 GTTGACTTAG
* *
34133023 GCATACGTAGTTTATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
34133049 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
34133075 G
1 G
34133076 ATCAGATCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:34133341 original size:158 final size:158
Alignment explanation
Indices: 34133049--34133343 Score: 362
Period size: 158 Copynumber: 1.9 Consensus size: 158
34133039 CCCAGTCTAA
* * * * * *
34133049 GCATATGGAGTTCATTCCCAGTCTAAGATCAGATCAGATGAAGGGTTGCGGCAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAAATCAGACCAGACGAAGGGTTGAGGCAGCAGGATCGACA
* * * * *
34133114 GCATGCAAGGGAGACCGGGCTGATCCCGGGCTTGCACATTCTGCCTCTCCGGCTAGCTGAGCACA
66 GCACGCAAGGGAGACCAGGCCGATCCCGGGCTTGCACATTCTACCTCTCCGGCGAGCTGAGCACA
34133179 CGCACGCCCATTTCGTGAGTTGACTTAG
131 CGCACGCCCATTTCGTGAGTTGACTTAG
* * *
34133207 GCATACGGAGTTCGTTCCCAGTCTAAAATCAGACCGGACCG-AGGGTTGAGGCAGCAGGATTGAC
1 GCATACGGAGTTCATTCCCAGTCTAAAATCAGACCAGA-CGAAGGGTTGAGGCAGCAGGATCGAC
* * * *
34133271 AGCACGCAGGGGGGACCAGTCCGATCCTC-GGCTTGCACATTCTACCTCTCTGGTCGA-CTGAGC
65 AGCACGCAAGGGAGACCAGGCCGATCC-CGGGCTTGCACATTCTACCTCTCCGG-CGAGCTGAGC
* *
34133334 GCCCGCACGC
128 ACACGCACGC
34133344 TCGTTTCCTG
Statistics
Matches: 114, Mismatches: 20, Indels: 6
0.81 0.14 0.04
Matches are distributed among these distances:
158 110 0.96
159 4 0.04
ACGTcount: A:0.22, C:0.28, G:0.29, T:0.20
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAAATCAGACCAGACGAAGGGTTGAGGCAGCAGGATCGACA
GCACGCAAGGGAGACCAGGCCGATCCCGGGCTTGCACATTCTACCTCTCCGGCGAGCTGAGCACA
CGCACGCCCATTTCGTGAGTTGACTTAG
Found at i:34133376 original size:158 final size:158
Alignment explanation
Indices: 34133056--34133390 Score: 354
Period size: 158 Copynumber: 2.1 Consensus size: 158
34133046 TAAGCATATG
* * * * * *
34133056 GAGTTCATTCCCAGTCTAAGATCAGATCAGATGAAGGGTTGCGGCAGTAGGATCGACAGCATGCA
1 GAGTTCATTCCCAGTCTAAAATCAGACCAGACGAAGGGTTGAGGCAGCAGGATCGACAGCACGCA
* * * *
34133121 AGGGAGACCGGGCTGATCCCGGGCTTGCACATTCTGCCTCTCCGGCTAGCTGAGCACACGCACGC
66 AGGGAGACCAGGCCGATCCCGGGCTTGCACATTCTACCTCTCCGGCGAGCTGAGCACACGCACGC
* ** **
34133186 CCATTTCGTGAGTTGACTTAGGCATACG
131 CCATTTCCTGAGTTGACTTAACCATAAA
* * *
34133214 GAGTTCGTTCCCAGTCTAAAATCAGACCGGACCG-AGGGTTGAGGCAGCAGGATTGACAGCACGC
1 GAGTTCATTCCCAGTCTAAAATCAGACCAGA-CGAAGGGTTGAGGCAGCAGGATCGACAGCACGC
* * * * * *
34133278 AGGGGGGACCAGTCCGATCCTC-GGCTTGCACATTCTACCTCTCTGGTCGA-CTGAGCGCCCGCA
65 AAGGGAGACCAGGCCGATCC-CGGGCTTGCACATTCTACCTCTCCGG-CGAGCTGAGCACACGCA
* * * *
34133341 CGCTCGTTTCCTGGGTTGGCTTAACCATAAA
128 CGCCCATTTCCTGAGTTGACTTAACCATAAA
34133372 GAGTTCATT-CCATGTCTAA
1 GAGTTCATTCCCA-GTCTAA
34133391 GCCCAGTCGG
Statistics
Matches: 144, Mismatches: 29, Indels: 8
0.80 0.16 0.04
Matches are distributed among these distances:
157 3 0.02
158 137 0.95
159 4 0.03
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.22
Consensus pattern (158 bp):
GAGTTCATTCCCAGTCTAAAATCAGACCAGACGAAGGGTTGAGGCAGCAGGATCGACAGCACGCA
AGGGAGACCAGGCCGATCCCGGGCTTGCACATTCTACCTCTCCGGCGAGCTGAGCACACGCACGC
CCATTTCCTGAGTTGACTTAACCATAAA
Found at i:34133901 original size:26 final size:26
Alignment explanation
Indices: 34133851--34133903 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
34133841 GTTGGCTTAG
*
34133851 GCATACAAAGTTCATTCCATGTCTAA
1 GCATACAAAGTTCATTCCATATCTAA
*
34133877 GCATACAGAGTTCATTCCCA-ATCTAA
1 GCATACAAAGTTCATT-CCATATCTAA
34133903 G
1 G
34133904 ATCAGACCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.34, C:0.25, G:0.13, T:0.28
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCATATCTAA
Found at i:34135768 original size:159 final size:159
Alignment explanation
Indices: 34135552--34135968 Score: 473
Period size: 159 Copynumber: 2.6 Consensus size: 159
34135542 GACCAGACTG
* * * * * *
34135552 ATCCTCGGCTTACGCATTCTGCCTCTCCAGCCGGCTGAGCGCCCGCATGCCCATTTCATGGGTTG
1 ATCCCCGGCTTGCGCATTCTGCCTCTCCAGCCGGCTGAGCGCCCGAACGCTCGTTTCATGGGTTG
* * * *
34135617 GCTTAGGCATAGGGATTTCATTCCATGTCTAAGCCCCAG-TCAGATCGAGGGTTGTGGCAGCAGG
66 GCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCACCAGATCAGATCGAGGGTTGTGGCACCAAG
* * *
34135681 ACCGATAGCATGCAGA-GGGGGATCGGGCCA
131 ACCGACAGCA--CAGAGGGGGGACCGAGCCA
* * * * *
34135711 ATCCCCGGCTTGCGCATTATGCCTCTCCGGCCGGCTCAGCGCCCAAACACTCGTTTCATGGGTTG
1 ATCCCCGGCTTGCGCATTCTGCCTCTCCAGCCGGCTGAGCGCCCGAACGCTCGTTTCATGGGTTG
* * * * * *
34135776 ACTTAGGCATACGAAGTTCATTCCCA-GTTTAAG-ATCAGATCGGATCGAGGGTTGTGGCACCAA
66 GCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCACCAGATCAGATCGAGGGTTGTGGCACCAA
* * * *
34135839 GATCGACAGCACATAGGGGGGACCGAGTCG
130 GACCGACAGCACAGAGGGGGGACCGAGCCA
* ** * * *
34135869 ATCCCCGGCTTGCGCATTCTACCTCTCCAGTTGGCTGAGCACCCGTACGCTCGTTTCCTGGGTTG
1 ATCCCCGGCTTGCGCATTCTGCCTCTCCAGCCGGCTGAGCGCCCGAACGCTCGTTTCATGGGTTG
34135934 GCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCA
66 GCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCA
34135969 TATGGAGTTC
Statistics
Matches: 210, Mismatches: 43, Indels: 10
0.80 0.16 0.04
Matches are distributed among these distances:
157 6 0.03
158 92 0.44
159 109 0.52
160 3 0.01
ACGTcount: A:0.19, C:0.29, G:0.28, T:0.24
Consensus pattern (159 bp):
ATCCCCGGCTTGCGCATTCTGCCTCTCCAGCCGGCTGAGCGCCCGAACGCTCGTTTCATGGGTTG
GCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCACCAGATCAGATCGAGGGTTGTGGCACCAAG
ACCGACAGCACAGAGGGGGGACCGAGCCA
Found at i:34135939 original size:158 final size:158
Alignment explanation
Indices: 34135465--34135966 Score: 505
Period size: 158 Copynumber: 3.2 Consensus size: 158
34135455 CCTAGTCTAA
* * ** *
34135465 GCATACGAAGTTCATTCCCAGTCTAAGATCAGATCGGACCAAGGGTTACGGCAGCAGGATCGGCA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGTGGCAGCAGGATCGACA
* *
34135530 --ACATGCAGGGGGGACC-AGACTGATCCTCGGCTTACGCATTCTGCCTCTCCAGCCGGCTGAGC
66 GCACAT--AGGGGGGACCGAGAC-GATCCCCGGCTTGCGCATTCTGCCTCTCCAGCCGGCTGAGC
* * * *
34135592 GCCCGCATGCCCATTTCATGGGTTGGCTTAG
128 GCCCGAACGCTCGTTTCATGGGTTGGCTTAG
* * * ** * *
34135623 GCATAGGGATTTCATT-CCATGTCTAAGCCCCAG-TCAGATCGAGGGTTGTGGCAGCAGGACCGA
1 GCATACGAAGTTCATTCCCA-GTCTAAG-ATCAGATCGGATCGAGGGTTGTGGCAGCAGGATCGA
* * * * * * * * *
34135686 TAGCATGCAGA-GGGGGATCGGGCCAATCCCCGGCTTGCGCATTATGCCTCTCCGGCCGGCTCAG
64 CAGCA--CATAGGGGGGACCGAGACGATCCCCGGCTTGCGCATTCTGCCTCTCCAGCCGGCTGAG
* * *
34135750 CGCCCAAACACTCGTTTCATGGGTTGACTTAG
127 CGCCCGAACGCTCGTTTCATGGGTTGGCTTAG
* * *
34135782 GCATACGAAGTTCATTCCCAGTTTAAGATCAGATCGGATCGAGGGTTGTGGCACCAAGATCGACA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGTGGCAGCAGGATCGACA
* * ** *
34135847 GCACATAGGGGGGACCGAGTCGATCCCCGGCTTGCGCATTCTACCTCTCCAGTTGGCTGAGCACC
66 GCACATAGGGGGGACCGAGACGATCCCCGGCTTGCGCATTCTGCCTCTCCAGCCGGCTGAGCGCC
* *
34135912 CGTACGCTCGTTTCCTGGGTTGGCTTAG
131 CGAACGCTCGTTTCATGGGTTGGCTTAG
* *
34135940 GCATAGGGAGTTCATT-CCATGTCTAAG
1 GCATACGAAGTTCATTCCCA-GTCTAAG
34135967 CATATGGAGT
Statistics
Matches: 272, Mismatches: 61, Indels: 22
0.77 0.17 0.06
Matches are distributed among these distances:
157 9 0.03
158 136 0.50
159 118 0.43
160 7 0.03
162 2 0.01
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.23
Consensus pattern (158 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGTGGCAGCAGGATCGACA
GCACATAGGGGGGACCGAGACGATCCCCGGCTTGCGCATTCTGCCTCTCCAGCCGGCTGAGCGCC
CGAACGCTCGTTTCATGGGTTGGCTTAG
Found at i:34137463 original size:341 final size:342
Alignment explanation
Indices: 34136805--34137549 Score: 974
Period size: 341 Copynumber: 2.2 Consensus size: 342
34136795 TGGCCGGTTG
* * * * * *
34136805 AGTGCCCGCACACTCGTTTCGTAGCTTGACTTAGGCATACAGAGTTCATCCCTAGTCTTAGCATA
1 AGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATA
** * * ** *
34136870 TGAAGTTCATTCCCAGTCTAAGATTGGATTGGACCGCGGGTTGCGGCAGCAGGATCGACAGCACG
66 CAAAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAAGGTTGCGGCAGCAGGATCGACAGCACA
* ** * *
34136935 TAGAGGGGACCAGACTGATCCTCGGCTTACGCATTCTGCCTCTCCGGTCGACTGAGCGCCCGAAC
131 TAGAGGGGACCAGACCGATCCTCAACGTA-GCATTCTGCCTCTCCGGCCGACTGAGCGCCCGAAC
* *
34137000 GCTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGATCGA
195 GCTCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGAATCGA
* *
34137065 GGGTTATGGCAGCGGGACCTACAGCACGCAGAGGGGGATCGGGCCGATCCCCGACTTGCGCATTA
260 GGGTTATGGCAGCGGGACCGACAGCACGCAGAGGGGGACCGGGCCGATCCCCGACTTGCGCATTA
34137130 TGCCTCTCCGACCGACTC
325 TGCCTCTCCGACCGACTC
* *
34137148 AGTGCCTGGACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATA
1 AGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATA
* * *
34137213 CAAAGTTCATTCCTAGTCTAAGATCGGATCGGACCGAAGGTTGTGGCAGTAGGATCGACAGCACA
66 CAAAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAAGGTTGCGGCAGCAGGATCGACAGCACA
* * * * * * *
34137278 TAGGGGGGACCGGGCCGATCCTCAACGT-GCATTCTGCCTCTCTGGCCGACTGAGCGCTCGCATG
131 TAGAGGGGACCAGACCGATCCTCAACGTAGCATTCTGCCTCTCCGGCCGACTGAGCGCCCGAACG
* * * *
34137342 C-CTATTTCGTGTGTTGGCTTAGGCATAGGGAGTTCGTTCCATGTCTAAGCCCCAGCCGAA-CTG
196 CTC-ATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGAATC-G
* * * * * *
34137405 AGGGTTGTGGCAGCGGGACCGGCAGCATGTAGAGGGGGACCGGGCTGATCCTCGACTTGCGCATT
259 AGGGTTATGGCAGCGGGACCGACAGCACGCAGAGGGGGACCGGGCCGATCCCCGACTTGCGCATT
* * * *
34137470 ATGCCTTTTCGACTGGCTC
324 ATGCCTCTCCGACCGACTC
* * * *
34137489 AGTGCCCGCACGCTCGTTTCATGGGTTAACTTATGCATACGGAGTTCATTCCCAGTCTAAG
1 AGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
34137550 ATCAGACCAG
Statistics
Matches: 346, Mismatches: 54, Indels: 6
0.85 0.13 0.01
Matches are distributed among these distances:
340 2 0.01
341 211 0.61
343 133 0.38
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (342 bp):
AGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATA
CAAAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAAGGTTGCGGCAGCAGGATCGACAGCACA
TAGAGGGGACCAGACCGATCCTCAACGTAGCATTCTGCCTCTCCGGCCGACTGAGCGCCCGAACG
CTCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGAATCGAG
GGTTATGGCAGCGGGACCGACAGCACGCAGAGGGGGACCGGGCCGATCCCCGACTTGCGCATTAT
GCCTCTCCGACCGACTC
Found at i:34138439 original size:26 final size:26
Alignment explanation
Indices: 34138403--34138455 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
34138393 GTTGACTTAG
* *
34138403 GCATACGGAGTTTA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
34138429 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
34138455 G
1 G
34138456 ATCGGATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:34139334 original size:26 final size:26
Alignment explanation
Indices: 34139284--34139336 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
34139274 GTTGACTTAG
**
34139284 GCATACGGAGTTCATCCCCTGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
**
34139310 GCATACGGAGTTCATTTCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
34139336 G
1 G
34139337 ATCGGACCGT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:34139776 original size:158 final size:158
Alignment explanation
Indices: 34139366--34139810 Score: 514
Period size: 159 Copynumber: 2.8 Consensus size: 158
34139356 GTGATAGTAG
* * *
34139366 GATCGATAGCACGCAGGGGGGATCGAGTCGATCCCCGGCTTGCGCATTCTTCCTTTCCGACCGGC
1 GATCGATAGCACGCAGGGGGGACCGAGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGC
* ** * * *
34139431 TGAGTGCCCGCATGCCTGTTTCATGGGTTGGCTTAGGCATAGGGAATTCATTCCATGTCTAAGCC
66 TGAGTGCCCGCATGCTTGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTATAAGAC
* * *
34139496 CCAGCCGGACCGAGGGTTGTGGCAGCAA
131 CAAACCGAACCGAGGGTTGTGGCAGCAA
* * * * * * ** *
34139524 GATCGGTAGCACGTAGAGGGGGACCGGGTCGATCCTCAGCTTGCGCATTATGCCTCTTTGGCCGG
1 GATCGATAGCACGCAG-GGGGGACCGAGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGG
* * * * * * * *
34139589 TTCAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTATGCATATAGAGTTCATTCC-TAGTATAAG
65 CTGAGTGCCCGCATGCTTGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCAT-GTATAAG
*
34139653 ATCAAACCGAACCGAGGGTTGTGGCAGCAA
129 ACCAAACCGAACCGAGGGTTGTGGCAGCAA
* * * * * *
34139683 GATCGACAGCATGCAGGGGGGACCGAGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGATCAGC
1 GATCGATAGCACGCAGGGGGGACCGAGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGC
* * *
34139748 TGAGCGCCCGCATGCTTGTTTTATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAG
66 TGAGTGCCCGCATGCTTGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTATAAG
34139811 CATACGAAGT
Statistics
Matches: 229, Mismatches: 55, Indels: 6
0.79 0.19 0.02
Matches are distributed among these distances:
158 103 0.45
159 126 0.55
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.25
Consensus pattern (158 bp):
GATCGATAGCACGCAGGGGGGACCGAGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGC
TGAGTGCCCGCATGCTTGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTATAAGAC
CAAACCGAACCGAGGGTTGTGGCAGCAA
Found at i:34139813 original size:26 final size:26
Alignment explanation
Indices: 34139784--34139836 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
34139774 GTTGGCTTAG
34139784 GCATAC-AGAGTTCATTC-CATGTCTAA
1 GCATACGA-AGTTCATTCGCA-GTCTAA
34139810 GCATACGAAGTTCATTCGCAGTCTAA
1 GCATACGAAGTTCATTCGCAGTCTAA
34139836 G
1 G
34139837 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCGCAGTCTAA
Found at i:34140538 original size:26 final size:26
Alignment explanation
Indices: 34140508--34140560 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34140498 GTTGACTTAG
*
34140508 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATATGAAGTTCATCCCCAGTCTAA
*
34140534 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATATGAAGTTCATCCCCAGTCTAA
34140560 G
1 G
34140561 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATATGAAGTTCATCCCCAGTCTAA
Found at i:34141325 original size:26 final size:26
Alignment explanation
Indices: 34141289--34141341 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
34141279 GTTGACTTAG
34141289 GCATATAGAGTTCATCCCCAGTCTAA
1 GCATATAGAGTTCATCCCCAGTCTAA
* **
34141315 GCATATGGAGTTCATTTCCAGTCTAA
1 GCATATAGAGTTCATCCCCAGTCTAA
34141341 G
1 G
34141342 ATCAGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATATAGAGTTCATCCCCAGTCTAA
Found at i:34141981 original size:171 final size:171
Alignment explanation
Indices: 34141696--34142014 Score: 433
Period size: 171 Copynumber: 1.9 Consensus size: 171
34141686 CAGGATCGAT
* * * * * * *
34141696 AGCACGCAGTGGGGATCGGGTCGATCCTCGACTTATGCATTCTGCCTCTCCGGTCGGTTGAGTGC
1 AGCACGCAGGGGGGATCGGCTCGATCCTCGACTTACGCATTCTACCTCTCCGATCGGCTGAGCGC
* * ** * * * *
34141761 CCGCTCGCTCGTTTCATGGGTTGGCTTAGGTGTACGGAGTTCATTCCATGTCTAAGCATAAGGAG
66 CCGCACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCCAAGCATAAGAAC
*
34141826 TCCATTCCTAGTCTAAGATCAGACCAGACCGAGGTTGCAGC
131 TCCATTCCCAGTCTAAGATCAGACCAGACCGAGGTTGCAGC
* **
34141867 AGCACGCAGGGGGGATCAGGCT-GATCCTCGACTTGCGCATTCTACCTCTTTGATCGGCTGAGCG
1 AGCACGCAGGGGGGATC-GGCTCGATCCTCGACTTACGCATTCTACCTCTCCGATCGGCTGAGCG
*
34141931 CCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCCAAGCATACGAA
65 CCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCCAAGCATAAGAA
*
34141996 CTTCATTCCCAGTCTAAGA
130 CTCCATTCCCAGTCTAAGA
34142015 GCGGCCTGGA
Statistics
Matches: 126, Mismatches: 21, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
171 123 0.98
172 3 0.02
ACGTcount: A:0.20, C:0.27, G:0.27, T:0.26
Consensus pattern (171 bp):
AGCACGCAGGGGGGATCGGCTCGATCCTCGACTTACGCATTCTACCTCTCCGATCGGCTGAGCGC
CCGCACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCCAAGCATAAGAAC
TCCATTCCCAGTCTAAGATCAGACCAGACCGAGGTTGCAGC
Found at i:34143038 original size:26 final size:26
Alignment explanation
Indices: 34143002--34143054 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34142992 GTTGGCTTAG
*
34143002 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
34143028 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
34143054 G
1 G
34143055 ATCAGACCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:34143189 original size:196 final size:197
Alignment explanation
Indices: 34142871--34143248 Score: 476
Period size: 196 Copynumber: 1.9 Consensus size: 197
34142861 CAGCCAGACT
* * * **
34142871 GAGGGTTGTGGTAATAGGACCAGCAACGGGATCGGCAGTACGCAGAGAGGGACCGGGCTGATCCC
1 GAGGGTTGTGGCAACAGGACCAACAACGGGATCGGCAGTACGCAGAGAGGGACCAAGCTGATCCC
* * * *
34142936 CAACTTACGCATTCTACCTCTCCGGCCAGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTA
66 CAACTTACGCATTATACCTCTCCGGCCAGCTGAGCACCCACACGCTCATTTCGTGGGTTGACTTA
* *
34143001 GGCATACGGAGTTCAT-TCCATGTCTAAGCATACAGAGTTCATTCCC-AGTCTAAGATCAGACCA
131 GGCATACGGAGTTCATCCCCA-ATCTAAGCATACAGAGTTCA-TCCCTAGTCTAAGATCAGACCA
34143064 AACC
194 AACC
* ** * * *
34143068 GAGGGTTGTGGCAGCAGGACCAACAGTGGGATCGGTAG-ATGCAGAGGGGGACCAAGCTGATCCC
1 GAGGGTTGTGGCAACAGGACCAACAACGGGATCGGCAGTACGCAGAGAGGGACCAAGCTGATCCC
** * * * **
34143132 CGGCTTACGCATTATGCCTCTTCGG-CTGACTGAGTGCCCACACGCTCATTTCGTGGGTTGACTT
66 CAACTTACGCATTATACCTCTCCGGCCAG-CTGAGCACCCACACGCTCATTTCGTGGGTTGACTT
*
34143196 AGGCATACGGAGTTCATCCCCAATCTAAGCATACGGAGTTCATCCCTAGTCTA
130 AGGCATACGGAGTTCATCCCCAATCTAAGCATACAGAGTTCATCCCTAGTCTA
34143249 CCGAAGGTAG
Statistics
Matches: 153, Mismatches: 25, Indels: 7
0.83 0.14 0.04
Matches are distributed among these distances:
195 6 0.04
196 113 0.74
197 34 0.22
ACGTcount: A:0.23, C:0.27, G:0.28, T:0.22
Consensus pattern (197 bp):
GAGGGTTGTGGCAACAGGACCAACAACGGGATCGGCAGTACGCAGAGAGGGACCAAGCTGATCCC
CAACTTACGCATTATACCTCTCCGGCCAGCTGAGCACCCACACGCTCATTTCGTGGGTTGACTTA
GGCATACGGAGTTCATCCCCAATCTAAGCATACAGAGTTCATCCCTAGTCTAAGATCAGACCAAA
CC
Found at i:34143735 original size:26 final size:26
Alignment explanation
Indices: 34143699--34143751 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
34143689 GTTGGCTTAG
34143699 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
34143725 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
34143751 G
1 G
34143752 ATTTTAAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:34144381 original size:26 final size:26
Alignment explanation
Indices: 34144334--34144383 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
34144324 GGCTTAGGCA
*
34144334 TACGGAGTTCATTCCATGTCTAAGCG
1 TACGGAGTTCATTCCATATCTAAGCG
34144360 TACGGAGTTCATTCCCA-ATCTAAG
1 TACGGAGTTCATT-CCATATCTAAG
34144384 ATTTTAAGCC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCATATCTAAGCG
Found at i:34145085 original size:26 final size:26
Alignment explanation
Indices: 34145046--34145098 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
34145036 GTTGACTTAG
34145046 GCATACGAAATTCATCCCCAGTCTAA
1 GCATACGAAATTCATCCCCAGTCTAA
* * * *
34145072 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAATTCATCCCCAGTCTAA
34145098 G
1 G
34145099 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAATTCATCCCCAGTCTAA
Found at i:34145576 original size:26 final size:26
Alignment explanation
Indices: 34145546--34145598 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
34145536 GTTCGGTTAG
34145546 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
34145572 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
34145598 G
1 G
34145599 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:34145877 original size:159 final size:158
Alignment explanation
Indices: 34145712--34146074 Score: 413
Period size: 158 Copynumber: 2.3 Consensus size: 158
34145702 CGTACATCCG
* * * *
34145712 TTTCATGGGTTGGCCTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACTGAGGGTT
1 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAAACCAGACTGAGGGTT
** * * * * * * * * *
34145777 GTGGCAGTGGGATTGACAGCATGCAGAGGGGGCCCGAGCCGATCCCCGGCTTGCGCATTATGCCT
66 ACGACAGTAGGATCGACAGAACGCAG-GGGGGACCGAGCCAATCCCCGACTTACGCATTATGCCT
** * *
34145842 CTCTGGCCAGCTTAGCGCCCGTACGCTCA
130 CTCCAGCCAGCTGAGCGCCCGCACGCTCA
* * ** *
34145871 TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA-ATCTAAGATCAAACCGGACTGAGGGT
1 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCAAACCAGACTGAGGGT
* * * * * *
34145935 TACGATAGTAGGATCGACAGAACGTAGTGGGGATCGGGCCAATCCCCGACTTACGCATTCTGCCT
65 TACGACAGTAGGATCGACAGAACGCAGGGGGGACCGAGCCAATCCCCGACTTACGCATTATGCCT
*
34146000 CTCCAGCCAGCTGAGCGCCCGCACGCTCG
130 CTCCAGCCAGCTGAGCGCCCGCACGCTCA
*
34146029 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
1 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
34146075 ATACGGAGTT
Statistics
Matches: 167, Mismatches: 35, Indels: 5
0.81 0.17 0.02
Matches are distributed among these distances:
157 3 0.02
158 92 0.55
159 69 0.41
160 3 0.02
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (158 bp):
TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAAACCAGACTGAGGGTT
ACGACAGTAGGATCGACAGAACGCAGGGGGGACCGAGCCAATCCCCGACTTACGCATTATGCCTC
TCCAGCCAGCTGAGCGCCCGCACGCTCA
Found at i:34145935 original size:500 final size:500
Alignment explanation
Indices: 34145009--34146101 Score: 1408
Period size: 500 Copynumber: 2.2 Consensus size: 500
34144999 CTTTGGCCGG
* * * * *
34145009 CTGAGTGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAATTCATCCCCA-GTCTAAG
1 CTGAGTGCCCGCACGCTCGTTTCGTGGGTTG-GTTAGGCATACGGAGTTCAT-TCCATGTCTAAG
* *
34145073 CATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACTGAGGGTTATGGCAGTAGGATCGGCAA
64 CATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACTGAGGGTTACGGCAGCAGGATCGGCAA
* * * * * * *
34145138 CACGCAGGGGGGATCGAGCCGTTCCCCTGCTTGCGCATTTTGCCTCTCTGGCTGGCTGAGCACCC
129 CACGCAAGGGGGACCGAGCCGTTCCCCAGCTTGCACATTCTGCCTCTCTGACTGACTGAGCACCC
* * *
34145203 GCACGCCCATTTAGTTGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAAA
194 GCACACCCATTTAGTGGGTTGGCCTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAAA
* * * * *
34145268 CCGAGAGTTGTGGCAGCGGGACTGGCAGCATGCAGAGGGGGACCGGGCCAATCCTCGGTTTGTGC
259 CCGAGAGTTGTGGCAGCGGGACTGACAGCATGCAGAGGGGGACCGAGCCAATCCCCGGCTTGCGC
* * ** **
34145333 ATTATGCCTCTCCGGCTAGCTCAACGCTCGCACGCTTGTTTTGTGGGTTGACTTAGGCATACGGA
324 ATTATGCCTCTCCGGCCAGCTCAACGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGA
** * * * *
34145398 GTTCATTCCCAATCTAAGATTGAACCAGCCTGAGGGTTACGACAGTAGGATTGATAGCACGCAGG
389 GTTCATTCCCAATCTAAGATCAAACCAGACTGAGGGTTACGACAGTAGGATCGACAGAACGCAGG
* ** * *
34145463 GGGGACCGAGCCGAT-CCCGGGTTGCACATTCTGCCTCTCCGGCCAA
454 GGGGACCGAGCCAATCCCCGACTTACACATTCTGCCTCTCCAGCCAA
*
34145509 CTGAGTGCCCGCACGCTCGTTTCATGGGTTCGGTTAGGCATACGGAGTTCATTCCATGTCTAAGC
1 CTGAGTGCCCGCACGCTCGTTTCGTGGGTT-GGTTAGGCATACGGAGTTCATTCCATGTCTAAGC
* * * *
34145574 ATACGGAGTTCATTCCTAGTCTAAGATCGGACCGGAAC-GAGGGTTGCGGTAGCAGGATCGGCAG
65 ATACGGAGTTCATTCCTAGTCTAAGATCAGACCGG-ACTGAGGGTTACGGCAGCAGGATCGGCAA
* * * *
34145638 CACGTAAGGGGGACCTG-G-CTTATTCCCAGCTTGCACATTCTGCCTCT-TCGACTGACTGAGCG
129 CACGCAAGGGGGACC-GAGCCGT-TCCCCAGCTTGCACATTCTGCCTCTCT-GACTGACTGAGCA
* * *
34145700 CCCGTACATCCGTTTCA-TGGGTTGGCCTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGC
191 CCCGCACACCCATTT-AGTGGGTTGGCCTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGC
* * * * * * *
34145764 CAGACTGAGGGTTGTGGCAGTGGGATTGACAGCATGCAGAGGGGGCCCGAGCCGATCCCCGGCTT
255 CAAACCGAGAGTTGTGGCAGCGGGACTGACAGCATGCAGAGGGGGACCGAGCCAATCCCCGGCTT
* * * *
34145829 GCGCATTATGCCTCTCTGGCCAGCTTAGCGCCCGTACGCTCATTTCATGGGTTGACTTAGGCATA
320 GCGCATTATGCCTCTCCGGCCAGCTCAACGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATA
* *
34145894 CGGAGTTCATTCCCAATCTAAGATCAAACCGGACTGAGGGTTACGATAGTAGGATCGACAGAACG
385 CGGAGTTCATTCCCAATCTAAGATCAAACCAGACTGAGGGTTACGACAGTAGGATCGACAGAACG
* * * * * *
34145959 TAGTGGGGATCGGGCCAATCCCCGACTTACGCATTCTGCCTCTCCAGCCAG
450 CAGGGGGGACCGAGCCAATCCCCGACTTACACATTCTGCCTCTCCAGCCAA
*
34146010 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
1 CTGAGTGCCCGCACGCTCGTTTCGTGGGTTGG-TTAGGCATACGGAGTTCATTCCATGTCTAAGC
*
34146075 ATACGGAGTTCATTCCCAGTCTAAGAT
65 ATACGGAGTTCATTCCTAGTCTAAGAT
34146102 TTTGAGGCAC
Statistics
Matches: 511, Mismatches: 73, Indels: 17
0.85 0.12 0.03
Matches are distributed among these distances:
499 6 0.01
500 389 0.76
501 116 0.23
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (500 bp):
CTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
TACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACTGAGGGTTACGGCAGCAGGATCGGCAACA
CGCAAGGGGGACCGAGCCGTTCCCCAGCTTGCACATTCTGCCTCTCTGACTGACTGAGCACCCGC
ACACCCATTTAGTGGGTTGGCCTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAAACC
GAGAGTTGTGGCAGCGGGACTGACAGCATGCAGAGGGGGACCGAGCCAATCCCCGGCTTGCGCAT
TATGCCTCTCCGGCCAGCTCAACGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGT
TCATTCCCAATCTAAGATCAAACCAGACTGAGGGTTACGACAGTAGGATCGACAGAACGCAGGGG
GGACCGAGCCAATCCCCGACTTACACATTCTGCCTCTCCAGCCAA
Found at i:34146083 original size:26 final size:26
Alignment explanation
Indices: 34146047--34146099 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
34146037 GTTGGCTTAG
34146047 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
34146073 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
34146099 G
1 G
34146100 ATTTTGAGGC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:34146815 original size:26 final size:26
Alignment explanation
Indices: 34146766--34146816 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
34146756 TTGACTTAGG
*
34146766 CATACGGAGTTCATCCCTAGTCTAAA
1 CATACGGAGTTCATCCCTAATCTAAA
34146792 CATACGGAGTTCATTCCC-AATCTAA
1 CATACGGAGTTCA-TCCCTAATCTAA
34146817 GATCAAATCG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATCCCTAATCTAAA
Found at i:34147671 original size:26 final size:26
Alignment explanation
Indices: 34147619--34147671 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
34147609 GTTAGCTTAG
* * *
34147619 GCATACGAAGTTCATTCCATGTTTAA
1 GCATACAAAGTTCATTCCATATCTAA
34147645 GCATACAAAGTTCATTCCCA-ATCTAA
1 GCATACAAAGTTCATT-CCATATCTAA
34147671 G
1 G
34147672 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.34, C:0.23, G:0.13, T:0.30
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCATATCTAA
Found at i:34148277 original size:26 final size:26
Alignment explanation
Indices: 34148243--34148294 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
34148233 TTGACTTAGA
*
34148243 CATACGGAGTTC-GTCCTCAGTCTAAG
1 CATACGGAGTTCACTCC-CAGTCTAAG
*
34148269 CATATGGAGTTCACTCCCAGTCTAAG
1 CATACGGAGTTCACTCCCAGTCTAAG
34148295 ATCGGATTGG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCACTCCCAGTCTAAG
Found at i:34148536 original size:344 final size:339
Alignment explanation
Indices: 34147829--34148612 Score: 845
Period size: 344 Copynumber: 2.3 Consensus size: 339
34147819 GCCACCCCTT
* ** * * * *
34147829 CGATCCCCAGCTTCCGCATCCTGCCTCCCTGGTCTGCTGAGCGTCCGCACGCTCGTTTCGTGGGT
1 CGATCCCCAGCTTGCGCATTATGCCTCCTTGGTCGGCTAAGCG-CCGCATGCTCGTTTCGTGGGT
* * * * *
34147894 TGACTTAGGCATATGGAGTTCATCCCCAGTCTAAGGATACGAAGTTCATTCTCAGTCTAAGATCA
65 TGACTTAGACATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCACTCCCAGTCTAAGATCA
* * * * ** * * * *
34147959 GATCAGACCGAGGGTTATGGTAGTAGGATCGGTAGCACGCAGGGGGAACCGGGCCGATCCTCGGC
130 GATCAGACCGAGGGTTACGGCAGCAAGATCGACAGCACGCAGGGGGAACCGAGCCAATCCCCAGC
* *
34148024 TTATGCATTCTGCCTGCCCCATCGACTGAGCCCACACACTCGTTTCGTGGGTTGGCTTAGGATAC
195 TTACGCATTCTGCCTGCCCCATCGACTGAGCCCACACACTCGTTTCGTGGCTTGGCTTAGGATAC
*
34148089 GGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTATGGCAGCGGGATCAACAACACGC
260 GGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTATGGCAACGGGATCAACAACACGC
* * **
34148154 AGAGTGGGATCGGGT
325 AAAGGGGGATCGGCC
* * *
34148169 TGATTCTCAGCTTGCGCATTATGCCTCCTTGGTCGGCTAAGCGCACGCATGCTCGTTTCGTGGGT
1 CGATCCCCAGCTTGCGCATTATGCCTCCTTGGTCGGCTAAGCGC-CGCATGCTCGTTTCGTGGGT
* * * * *
34148234 TGACTTAGACATACGGAGTTCGTCCTCAGTCTAAGCATATGGAGTTCACTCCCAGTCTAAGATCG
65 TGACTTAGACATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCACTCCCAGTCTAAGATCA
** * * * *
34148299 GATTGGATCGAGGGTTGCGGCAGCAAGATTGACAGCATGCAAGGGGGAACCGAGCCAATCCCCAG
130 GATCAGACCGAGGGTTACGGCAGCAAGATCGACAGCACGC-AGGGGGAACCGAGCCAATCCCCAG
* * * *
34148364 CTTGCGCATTCTGCCT-CTTCGATCGACTGAGCACC-CGTACGCTCGTTTCGTGGCTTGGCTTAG
194 CTTACGCATTCTGCCTGC-CCCATCGACTGAGC-CCAC--ACACTCGTTTCGTGGCTTGGCTTAG
* * * * ***
34148427 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACGGAGGGTTGTGGCAATGGGATTGGCA
255 G-ATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTATGGCAACGGGATCAACA
*
34148492 GCACGCAAAGGGGGATCGGCC
319 ACACGCAAAGGGGGATCGGCC
* * * * * * *
34148513 CGATCCCCGGCTTGCGCATTATGCCT-CTCCGGCCGGCTCAGCGCCCGTATGATCGTTTCATGGG
1 CGATCCCCAGCTTGCGCATTATGCCTCCT-TGGTCGGCTAAGCG-CCGCATGCTCGTTTCGTGGG
** ** * *
34148577 TTGACTTAGGGATACAAAATTCATTCCCAGTCTAAG
64 TTGACTTAGACATACGGAGTTCATCCCCAGTCTAAG
34148613 ATAGGACCAG
Statistics
Matches: 362, Mismatches: 73, Indels: 14
0.81 0.16 0.03
Matches are distributed among these distances:
339 1 0.00
340 137 0.38
341 47 0.13
342 2 0.01
343 26 0.07
344 148 0.41
345 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (339 bp):
CGATCCCCAGCTTGCGCATTATGCCTCCTTGGTCGGCTAAGCGCCGCATGCTCGTTTCGTGGGTT
GACTTAGACATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCACTCCCAGTCTAAGATCAG
ATCAGACCGAGGGTTACGGCAGCAAGATCGACAGCACGCAGGGGGAACCGAGCCAATCCCCAGCT
TACGCATTCTGCCTGCCCCATCGACTGAGCCCACACACTCGTTTCGTGGCTTGGCTTAGGATACG
GAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTATGGCAACGGGATCAACAACACGCA
AAGGGGGATCGGCC
Found at i:34148774 original size:26 final size:26
Alignment explanation
Indices: 34148744--34148796 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34148734 ATTGGCTTAG
*
34148744 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
34148770 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
34148796 G
1 G
34148797 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:34149160 original size:25 final size:26
Alignment explanation
Indices: 34149125--34149176 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
34149115 GTTGACTTAG
34149125 GCATACAGAGTT-ATCCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* * *
34149150 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
34149176 G
1 G
34149177 ATCGGACCGC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 11 0.48
26 12 0.52
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:34149655 original size:26 final size:26
Alignment explanation
Indices: 34149626--34149678 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34149616 GTTGGCTTAG
*
34149626 GCATACGGAGTTTATT-CCATGTCTAA
1 GCATACCGAGTTTATTCCCA-GTCTAA
34149652 GCATACCGAGTTTATTCCCAGTCTAA
1 GCATACCGAGTTTATTCCCAGTCTAA
34149678 G
1 G
34149679 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACCGAGTTTATTCCCAGTCTAA
Found at i:34150487 original size:159 final size:159
Alignment explanation
Indices: 34150156--34150522 Score: 395
Period size: 159 Copynumber: 2.3 Consensus size: 159
34150146 TGCCTGAACA
* * * *
34150156 CTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCGTTCC-TAGTCTAAG-ATCAGACCGAACTG
1 CTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCACCAGACCGAACCG
* ** * * *
34150219 AGGGTTGCGACAGCAGGATTGGTAGCACGTAGGGGGGATCGGGTCGATCTTCGGCTTGCGCATTC
65 AAGGTTGCGACAGCAGGATTGGTAGCACACAGGGGGGATCGAGCCGATCCTCGGCTTGCGCATTC
* * * *
34150284 TGCCTCTTCGGCCGACTGAGCGCCTGCACG
130 TGCCTCTCCGACCGACTGAGCACCCGCACG
* * * * *
34150314 CCCATTACGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CC-AGACCG
1 CTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGA-ACCG
* * **
34150377 AAGGTTGTGGCAGC-GAGATTGGTAGCACACAGAGGGGGATCGAGCCGATCCTCGGCTTGTTCAT
65 AAGGTTGCGACAGCAG-GATTGGTAGCACACAG-GGGGGATCGAGCCGATCCTCGGCTTGCGCAT
* ** *
34150441 TCTGCCTCTCCGATCGGTTGAGCACCCGCATG
128 TCTGCCTCTCCGACCGACTGAGCACCCGCACG
*
34150473 CTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGC
1 CTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCAT-TCCATGTCTAAGC
34150523 TTACAGAGTT
Statistics
Matches: 171, Mismatches: 32, Indels: 11
0.80 0.15 0.05
Matches are distributed among these distances:
157 2 0.01
158 71 0.42
159 95 0.56
160 3 0.02
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.25
Consensus pattern (159 bp):
CTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGAACCGA
AGGTTGCGACAGCAGGATTGGTAGCACACAGGGGGGATCGAGCCGATCCTCGGCTTGCGCATTCT
GCCTCTCCGACCGACTGAGCACCCGCACG
Found at i:34151015 original size:26 final size:26
Alignment explanation
Indices: 34150965--34151017 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
34150955 GTTGGCTTAG
* *
34150965 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATATCTAA
34150991 GCATACAGAGTTCATTCCCA-ATCTAA
1 GCATACAGAGTTCATT-CCATATCTAA
34151017 G
1 G
34151018 ATCGAACCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Found at i:34152979 original size:159 final size:157
Alignment explanation
Indices: 34152729--34153173 Score: 486
Period size: 159 Copynumber: 2.8 Consensus size: 157
34152719 GCGGCAGTAG
* * * *
34152729 GATCAACAGCACGCAG-GGGGGACCAGGCCAATCCCCGGCTTGCGCATTCTACCTCTTCAATCGA
1 GATCGACAGCACGCAGAGGGGGACCAGGCCGATCCCC-GCTTACGCATTCTACCTCTTCGATCGA
* * * * * *
34152793 CTGAGCGCCCGTACGCTTGTTTAGTGGGTTGGCTTAGGCGTAGGGAGTTTATTCCATGTCTAAGC
65 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
* * * * *
34152858 TCTAGTC-AGACTAAGTGTTGTAGCATCAA
130 TC-AGACTAGACCAAGGGCT-TAGCAGCAA
** * * **
34152887 GA-CTGGTAGCACGCAGAGGGGGACCAGGCCGATCCCCAGCTTACGCATTATGCCTCTTCGGCCG
1 GATC-GACAGCACGCAGAGGGGGACCAGGCCGATCCCC-GCTTACGCATTCTACCTCTTCGATCG
* * * * * *
34152951 GCTCAGCGCCCGCATGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCA-ATCTAA
64 ACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAA
* * * *
34153015 GATCAGACTGGACCAAGGGCTTAGTAGCAG
128 GCTCAGACTAGACCAAGGGCTTAGCAGCAA
* *
34153045 GATCGACAGCACGTA-AGGGGGACCAGGCCGATCCCCGACTTATGCATTCTACCTCTTCGATCGA
1 GATCGACAGCACGCAGAGGGGGACCAGGCCGATCCCCG-CTTACGCATTCTACCTCTTCGATCGA
*
34153109 CTGAGCGCCCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
65 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
34153174 ATACGGAGTT
Statistics
Matches: 232, Mismatches: 48, Indels: 15
0.79 0.16 0.05
Matches are distributed among these distances:
156 4 0.02
157 96 0.41
158 30 0.13
159 99 0.43
160 3 0.01
ACGTcount: A:0.21, C:0.28, G:0.27, T:0.24
Consensus pattern (157 bp):
GATCGACAGCACGCAGAGGGGGACCAGGCCGATCCCCGCTTACGCATTCTACCTCTTCGATCGAC
TGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCT
CAGACTAGACCAAGGGCTTAGCAGCAA
Found at i:34153196 original size:26 final size:26
Alignment explanation
Indices: 34153146--34153198 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34153136 GTTGGCTTAG
*
34153146 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
34153172 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
34153198 G
1 G
34153199 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:34153903 original size:26 final size:26
Alignment explanation
Indices: 34153867--34153919 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34153857 GTTGACTTAG
34153867 GCATACAGAGTTCATCCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* *
34153893 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
34153919 G
1 G
34153920 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:34154946 original size:26 final size:26
Alignment explanation
Indices: 34154916--34154968 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34154906 GTTGACATAG
34154916 GCATACGGAGTTCA-TCTCCAGTCTAA
1 GCATACGGAGTTCATTC-CCAGTCTAA
*
34154942 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
34154968 G
1 G
34154969 ATCAGATCGT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:34155251 original size:159 final size:157
Alignment explanation
Indices: 34155003--34155467 Score: 429
Period size: 159 Copynumber: 2.9 Consensus size: 157
34154993 TGCGGGATCG
* * * * ** * * * *
34155003 ACAGCACACAGGGGGGACCGGGTCGATCTCCGGCTTATGCATTCTGTCTCTCCGGTCGGCTGAGC
1 ACAGCACACAGAGGGGACCGAGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGTCGGCTCAAC
* * * * *
34155068 A-CTCGAACGC-CTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA
66 ACCTC-CATGCTC-ATTTCGT-GGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCA
* * *
34155131 GCGGAACTGAGGGTTGTGGCAGCGGGACCG
128 GCGGAACCGAGGGTTGTGGCAGCAGGACCA
* * * * *
34155161 ACAGCACGCAGAGGGGGACTGGGTCGATCCCTGGCTTGCGCATTATGCCTCTCCGGTCGGCTCAA
1 ACAGCACACAGA-GGGGACCGAGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGTCGGCTCAA
* * **
34155226 CGCC-CGCATGCTCATTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATC
65 CACCTC-CATGCTCATTTCGT-GGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCC
* * **
34155288 AGACCGAACCGAGGGTTGTAGCAGCAGGATTA
127 AG-CGGAACCGAGGGTTGTGGCAGCAGGACCA
* * * * * * * *
34155320 ATAGGACACTGAGGGGACCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCTGGTCGGTTGAGC
1 ACAGCACACAGAGGGGACCGAGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGTCGGCTCAAC
** *
34155385 ACCTCCATGCTTGTTTCGTGGGTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCT
66 ACCTCCATGCTCATTTCGTGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGC-
34155450 GG-ACCGAGGGTTGTGGCA
130 GGAACCGAGGGTTGTGGCA
34155468 ACAAGATCAG
Statistics
Matches: 248, Mismatches: 50, Indels: 19
0.78 0.16 0.06
Matches are distributed among these distances:
156 3 0.01
157 49 0.20
158 74 0.30
159 117 0.47
160 5 0.02
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.24
Consensus pattern (157 bp):
ACAGCACACAGAGGGGACCGAGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGTCGGCTCAAC
ACCTCCATGCTCATTTCGTGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCG
GAACCGAGGGTTGTGGCAGCAGGACCA
Found at i:34156861 original size:157 final size:157
Alignment explanation
Indices: 34156373--34156865 Score: 483
Period size: 158 Copynumber: 3.1 Consensus size: 157
34156363 CAGACCGGAT
* * * ** *
34156373 CGAGGGTTGCGGTAGTAGGATCGATAGCACATAAGGGGGCCCAGGTCGATCCCCGACTTACGCAT
1 CGAGGGTTGTGGTAGTAGGATCGACAGCACGT-AGGGGGGACGGGTCGATCCCCGACTTACGCAT
* * ** * * *
34156438 TCTGCCTCTCCGGTCAGCTGAGCACCCGCATGCCCGTTTCGTAGGTTGGCTTAGGCATAGGGACT
65 TCTGCCTCTCCGGTCGGCTGAGCGCCCGCATGTTCGTTTCGTGGGTTGGCTTAGGCATACGGAGT
* *
34156503 TCATTCCATGTCTAAGCCCTAGCCGGAC
130 TCATTCCATGTCTAAGCCCCAGCCGAAC
** * * * * *
34156531 CGAGGGTTGTGGTAGCGGGACCAACAGCACGCAAAGGGGGATCGGGTCGATCCCCGGCTTACGCA
1 CGAGGGTTGTGGTAGTAGGATCGACAGCACG-TAGGGGGGA-CGGGTCGATCCCCGACTTACGCA
* * * * * * *
34156596 TTATGCCTCT-CGGCCGGCTCAGTGCCCACATGCTT-GTTTCATGGGTTGACTTAGGCATACGGA
64 TTCTGCCTCTCCGGTCGGCTGAGCGCCCGCATG-TTCGTTTCGTGGGTTGGCTTAGGCATACGGA
* ** *
34156659 GTTCATTCCCTGTCTAAG-ATCAGAAC-AGAC
128 GTTCATTCCATGTCTAAGCCCCAG-CCGA-AC
* ** **
34156689 CAAGGGTTGCAGTAGTAGGATCGACAGCACGTAGGGGGGACGGG-CTGATCCCCGACTTGTGCAT
1 CGAGGGTTGTGGTAGTAGGATCGACAGCACGTAGGGGGGACGGGTC-GATCCCCGACTTACGCAT
* * * *
34156753 TCTGCCTCTCCGGTCGGTTGAGCGCCCGTACGTTCATTTCGTGGGTTGGCTTAGGCATACGGAGT
65 TCTGCCTCTCCGGTCGGCTGAGCGCCCGCATGTTCGTTTCGTGGGTTGGCTTAGGCATACGGAGT
*
34156818 TAATTCCATGTCTAAGCCCCAGCCGAAC
130 TCATTCCATGTCTAAGCCCCAGCCGAAC
**
34156846 CGAGCATTGTGGTAGTAGGA
1 CGAGGGTTGTGGTAGTAGGA
34156866 CCGGCAGTGG
Statistics
Matches: 259, Mismatches: 66, Indels: 21
0.75 0.19 0.06
Matches are distributed among these distances:
155 1 0.00
156 29 0.11
157 83 0.32
158 116 0.45
159 30 0.12
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (157 bp):
CGAGGGTTGTGGTAGTAGGATCGACAGCACGTAGGGGGGACGGGTCGATCCCCGACTTACGCATT
CTGCCTCTCCGGTCGGCTGAGCGCCCGCATGTTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTT
CATTCCATGTCTAAGCCCCAGCCGAAC
Found at i:34158087 original size:26 final size:26
Alignment explanation
Indices: 34158051--34158103 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34158041 GTTGACTTAG
34158051 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
34158077 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
34158103 G
1 G
34158104 ATCTGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:34158738 original size:26 final size:26
Alignment explanation
Indices: 34158702--34158754 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
34158692 GTTGACTTAG
34158702 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
34158728 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
34158754 G
1 G
34158755 ATCAGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:34158915 original size:26 final size:26
Alignment explanation
Indices: 34158886--34158938 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
34158876 GTTGGCTTAG
*
34158886 GCATACAGAGTTTATTCCATGCCTAA
1 GCATACAGAGTTAATTCCATGCCTAA
* * *
34158912 GCATACGGAGTTAATTCCCTGTCTAA
1 GCATACAGAGTTAATTCCATGCCTAA
34158938 G
1 G
34158939 ATCGGACTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTAATTCCATGCCTAA
Done.