Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 375 of 402
Found at i:34159390 original size:26 final size:26
Alignment explanation
Indices: 34159360--34159412 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
34159350 GTTGGCTTAG
34159360 GCATACGGAGTTCA-TCCCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
34159386 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
34159412 G
1 G
34159413 ATCAGATCGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 21 0.81
27 5 0.19
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:34159681 original size:171 final size:170
Alignment explanation
Indices: 34159471--34159852 Score: 482
Period size: 171 Copynumber: 2.2 Consensus size: 170
34159461 TAGCACGAGG
* * * **
34159471 GGGGGATCGGGCTGATCCTCGATTTACGTATTCTGCCTCTTCGAGT-GGTTGAGCGTCCGTACGC
1 GGGGGATC-GGCTGATCCTCGACTTACGTATTATGCCTCTTCGA-TCGGTTGAGCGCCCACACGC
*** *
34159535 TCATTTCATGGGCTGGCTTAGGCATATGTAGTTCATTCCATGTCTAAG-CCTCAATTGGACCGAG
64 TCATTTCATGGGCTGGCTTAGGCATACAAAGTTCATTCCATGTCTAAGCCCT-AACTGGACCGAG
*
34159599 GGTTGTGGCAGCAAGA-CTGGCAGCGAGATCGACAGTATGCAGA
128 GGTTGTGGCAGCAAGATC-GGCAGCGAGATCGACAGCATGCAGA
* * *
34159642 GGGGGATCGAGCTGATCCTCGGCTTATGTATTATGCCTCTTCGATCGGTTGAGTGCCCACACGCT
1 GGGGGATCG-GCTGATCCTCGACTTACGTATTATGCCTCTTCGATCGGTTGAGCGCCCACACGCT
* *
34159707 CGTTTCATGGGCTGGCTTAGGCATACAAAGTTCATTCCATGTCTAAGCCCTAGCTGGACCGAGGG
65 CATTTCATGGGCTGGCTTAGGCATACAAAGTTCATTCCATGTCTAAGCCCTAACTGGACCGAGGG
* * * * *
34159772 TTGTGGTAGCAGGATCGGTAGTGGGATCGACAGCATGCAGA
130 TTGTGGCAGCAAGATCGGCAGCGAGATCGACAGCATGCAGA
* * *
34159813 GGGGGATCGGACTGATCCCCGACTTGCGCATTATGCCTCT
1 GGGGGATCGG-CTGATCCTCGACTTACGTATTATGCCTCT
34159853 CCAACCGGCC
Statistics
Matches: 181, Mismatches: 25, Indels: 10
0.84 0.12 0.05
Matches are distributed among these distances:
170 3 0.02
171 174 0.96
172 4 0.02
ACGTcount: A:0.19, C:0.23, G:0.31, T:0.27
Consensus pattern (170 bp):
GGGGGATCGGCTGATCCTCGACTTACGTATTATGCCTCTTCGATCGGTTGAGCGCCCACACGCTC
ATTTCATGGGCTGGCTTAGGCATACAAAGTTCATTCCATGTCTAAGCCCTAACTGGACCGAGGGT
TGTGGCAGCAAGATCGGCAGCGAGATCGACAGCATGCAGA
Found at i:34159941 original size:26 final size:26
Alignment explanation
Indices: 34159911--34159963 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
34159901 GTTGACTTAG
34159911 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
34159937 GCATACTGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
34159963 G
1 G
34159964 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:34160717 original size:26 final size:26
Alignment explanation
Indices: 34160681--34160733 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34160671 GTTGGCTTAG
*
34160681 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
34160707 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
34160733 G
1 G
34160734 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:34161904 original size:26 final size:26
Alignment explanation
Indices: 34161867--34161919 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
34161857 GTTGGCTTAG
*
34161867 GCATACAGAGTTGATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
34161893 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
34161919 G
1 G
34161920 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 1 0.04
26 20 0.83
27 3 0.12
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:34163369 original size:26 final size:26
Alignment explanation
Indices: 34163320--34163372 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
34163310 GTTGACTTAG
*
34163320 GCATATGGAGTTAATCCCTGGTCTAA
1 GCATATGGAGTTAATCCCTAGTCTAA
*
34163346 GCATATGGAGTTCATTCCC-AGTCTAA
1 GCATATGGAGTT-AATCCCTAGTCTAA
34163372 G
1 G
34163373 ATTGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTAATCCCTAGTCTAA
Found at i:34163654 original size:159 final size:160
Alignment explanation
Indices: 34163383--34163849 Score: 378
Period size: 159 Copynumber: 2.9 Consensus size: 160
34163373 ATTGGACCGG
* * * * *
34163383 ACCAAGGGTTTC-GACAGCAGGATTGACAGCACG--TAGGGGGACCGGGCCGATCCTCGGCTTAC
1 ACCAAGGGTTGCAG-CAGCAGGATCGATAGCACGCAAAGGGGGACCAGGCCGATCCTCGGCTTAC
* * *** * * * * * * * * * *
34163445 TCATTCTGCCTCTCCGGTC-AGTTGAGCACCCGCACACCCGTTTCGTGGGTTGGCTTAGGCATAG
65 GCATTATGCCTCTCCAACCGA-CTCAGCACCCACACGCTCATTCCATGGGTTGGCTTACGCATAC
*
34163509 GGAGTTCATTCCATGTCTAAGCCCCA-ATC-A
129 GGAGTTCATTCCATGTCTAAGCACCAGATCGA
* * *
34163539 GACCGAGGGTTGTAGCAG-TGAGATCGATAGCACGCAAAGGGGGACCAGGCCGATCC-CTGGCTT
1 -ACCAAGGGTTGCAGCAGCAG-GATCGATAGCACGCAAAGGGGGACCAGGCCGATCCTC-GGCTT
* * ** * * * * * **
34163602 GCGCATTATGCCTCTTCAACCGACTCAGTGCTCGCATGCTCGTTCCATGGGTTGACTTATACATA
63 ACGCATTATGCCTCTCCAACCGACTCAGCACCCACACGCTCATTCCATGGGTTGGCTTACGCATA
* * *
34163667 CGGAGTTCATTCCCA-ATCAAAG-ATCAGATCGA
128 CGGAGTTCATT-CCATGTCTAAGCACCAGATCGA
* * *
34163699 ACCAAGGGTTGCAGCAGCAGGATCGATAGCACGCAAAGGGGGATCGGGCTGATCCTCGGCTTACG
1 ACCAAGGGTTGCAGCAGCAGGATCGATAGCACGCAAAGGGGGACCAGGCCGATCCTCGGCTTACG
* * * * * * *
34163764 CATTCTGCCTCTCCAGCTGGCTGAGCACCCACACGCTCATTTCATGGGTTGGCTTACGCATACGA
66 CATTATGCCTCTCCAACCGACTCAGCACCCACACGCTCATTCCATGGGTTGGCTTACGCATACGG
34163829 AGTTCATTCCATGTCTAAGCA
131 AGTTCATTCCATGTCTAAGCA
34163850 TATGGAGTTC
Statistics
Matches: 238, Mismatches: 59, Indels: 23
0.74 0.18 0.07
Matches are distributed among these distances:
156 1 0.00
157 23 0.10
158 7 0.03
159 199 0.84
160 8 0.03
ACGTcount: A:0.22, C:0.28, G:0.27, T:0.23
Consensus pattern (160 bp):
ACCAAGGGTTGCAGCAGCAGGATCGATAGCACGCAAAGGGGGACCAGGCCGATCCTCGGCTTACG
CATTATGCCTCTCCAACCGACTCAGCACCCACACGCTCATTCCATGGGTTGGCTTACGCATACGG
AGTTCATTCCATGTCTAAGCACCAGATCGA
Found at i:34163851 original size:26 final size:26
Alignment explanation
Indices: 34163821--34163873 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
34163811 GTTGGCTTAC
34163821 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
* *
34163847 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
34163873 G
1 G
34163874 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:34164803 original size:184 final size:184
Alignment explanation
Indices: 34164494--34164922 Score: 535
Period size: 184 Copynumber: 2.3 Consensus size: 184
34164484 TCTTTGGTCA
* * *
34164494 GCTGAGCACCCGCACG-TTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCTCTA-GTCTA
1 GCTGAGCACCCGCACGCTT-GTTTTGTGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTA
*
34164557 AGCATATGAAGTTCATTCCCAATCTAAGATCGGATCAGACCGAGGGTTACGATAGCAGGATCGAT
64 AGCATATGAAGTTCATTCCCAATCTAAGATCGGATCAGACCGAGGGTTACGACAGCAGGATCGAT
* * * * *
34164622 AGCAT-GCAGGGGGGATCAGACCGATCCCC-GACTTGTGCATTCTGCCTCTCCGGCCG
129 AG-ATCGCAGAGGGGATCAGACCAATCCCCAG-CTTATGCATCCTGCCTCTCCGACCG
*
34164678 GCTGAGCACCCGCACGCTTGTTTTGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAG
1 GCTGAGCACCCGCACGCTTGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
* ** *
34164743 CATATGGAGTTCATTCCCAATCTAAGATCGGATC-GAACCGAGGGTTGTGACAGCAGGATCGGTA
66 CATATGAAGTTCATTCCCAATCTAAGATCGGATCAG-ACCGAGGGTTACGACAGCAGGATCGATA
* * * * *
34164807 GATCGTAGAGGGGATCGGGCCAATCCTCAGCTTATGTATCCTGCCTCTCCGACCG
130 GATCGCAGAGGGGATCAGACCAATCCCCAGCTTATGCATCCTGCCTCTCCGACCG
* *** * * * *
34164862 GCTGAGCACCCGCACACCCATTTTGTTGGCTGGCTTAGGCATAGGGGGTTCATTCCATGTC
1 GCTGAGCACCCGCACGCTTGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
34164923 CACGTGCCAG
Statistics
Matches: 212, Mismatches: 28, Indels: 10
0.85 0.11 0.04
Matches are distributed among these distances:
183 6 0.03
184 203 0.96
185 3 0.01
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.26
Consensus pattern (184 bp):
GCTGAGCACCCGCACGCTTGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
CATATGAAGTTCATTCCCAATCTAAGATCGGATCAGACCGAGGGTTACGACAGCAGGATCGATAG
ATCGCAGAGGGGATCAGACCAATCCCCAGCTTATGCATCCTGCCTCTCCGACCG
Found at i:34165440 original size:158 final size:156
Alignment explanation
Indices: 34164850--34165442 Score: 490
Period size: 158 Copynumber: 3.8 Consensus size: 156
34164840 ATGTATCCTG
* * * * *
34164850 CCTCTCCGACCGGCTGAGCACCCGCACACCCATTTTGTTGGCTGGCTTAGGCATAGGGGGTTCAT
1 CCTCTCCGACCGGCTGAGCACCCGCACACCCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT
* * * * * * * *
34164915 TCCATGTCCACGTGCCAGTCGGACCGAGGGTTGTGGCAGCGGGACCGACAGCACGAGTGGGGGAT
66 TCCATGTCTAAG-CCCAGCCAGACTGAGGGTTGTGGCAGCAGGACCGACAGCACGAGAGGGGGAT
* * *
34164980 CGGGTCGATCCCCGGCTTGCACATTATG
130 CGGGTCGATCCCC-ACTTGCGCATTATA
* * *** * * * * *
34165008 CCTATTCGGTTGGATCAGCACCCACACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCAT
1 CCTCTCCGACCGGCTGAGCACCCGCACACCCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT
* * * * ** * *
34165073 TCCATGTCTAAGCCCTAGTCAGACTGAGGATTCTGGTAGTGGGACCGGCAGCACGTAGAGAGGGA
66 TCCATGTCTAAGCCC-AGCCAGACTGAGGGTTGTGGCAGCAGGACCGACAGCACG-AGAGGGGGA
* * *
34165138 -CTGGGCCGGTCCCCGACTTACGCATTATA
129 TC-GGGTCGATCCCC-ACTTGCGCATTATA
* * ** * * * * * *
34165167 CCTCTCCGACCGACTTAGTGCCCGCACGCTCATTCCGTGGGTTGACCTAGGCAAACGGAGTTCAT
1 CCTCTCCGACCGGCTGAGCACCCGCACACCCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT
** ** * *
34165232 TCC-TAGTCTAAGATCAGACTGGACTGAGGGTTGTGGCAGCAGGATCGACAGCATGCA-AGGGGG
66 TCCAT-GTCTAAGCCCAG-CCAGACTGAGGGTTGTGGCAGCAGGACCGACAGCACG-AGAGGGGG
*
34165295 ATCGGGTCGATCCCCATCTTGCGCATTCTA
128 ATCGGGTCGATCCCCA-CTTGCGCATTATA
* * * * * *
34165325 CCTCTCCGGCCGCCTGAGCACCCGCACACTCATTTTGTGGGTTTGCTTAGGCATACAGAGTTCAT
1 CCTCTCCGACCGGCTGAGCACCCGCACACCCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT
* * * *
34165390 TCCATGTCTAAGCCCAAGCCAGACTGAGGGTTATGGTAGCAGAACTGACAGCA
66 TCCATGTCTAAGCCC-AGCCAGACTGAGGGTTGTGGCAGCAGGACCGACAGCA
34165443 GCGTCGATAG
Statistics
Matches: 337, Mismatches: 89, Indels: 18
0.76 0.20 0.04
Matches are distributed among these distances:
157 3 0.01
158 216 0.64
159 118 0.35
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (156 bp):
CCTCTCCGACCGGCTGAGCACCCGCACACCCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT
TCCATGTCTAAGCCCAGCCAGACTGAGGGTTGTGGCAGCAGGACCGACAGCACGAGAGGGGGATC
GGGTCGATCCCCACTTGCGCATTATA
Found at i:34165878 original size:159 final size:158
Alignment explanation
Indices: 34165703--34166075 Score: 371
Period size: 158 Copynumber: 2.4 Consensus size: 158
34165693 CTGAGCTTCT
* ** *
34165703 GCACGCTCGTTTCGTGGGTTTGCTTAGGCATGGGGAGTTCATTCCATGTCTAAGCCCCAG-CCGA
1 GCACGCTAGTTTCGTGGGTTTGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGA
*
34165767 ACCAAGCGTT-GTGTCAGCAGGACCGACAGCACACAAAGCGGGACCGAGCCGATCCTCGGCTTAT
66 ACCAAGCGTTAG-GT-AGCAGGACCGACAGCACAC-AAGCGGGACCGAGCCGATCCTCGGCTTAC
* *
34165831 GCATTATGCCTCTTCGACT-AGCTCAGCGCCC
128 GCATTATGCCTCTCCG-CTCAGCTCAGCACCC
* * * **
34165862 GCACGCTGGTTTCGTGGG-TTGACTTATGCATATGGAGTTCATTCCCA-GTCTAAG-ATTAGACC
1 GCACGCTAGTTTCGTGGGTTTG-CTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGACC
* * * * * ** * * * * *
34165924 GAATCGAGGGTTACGGTAGCAGGATCGATAGCATGCAGGGGGGATCGAGCTGATCCTTGGCTTAC
64 GAACCAAGCGTTA-GGTAGCAGGACCGACAGCACACAAGCGGGACCGAGCCGATCCTCGGCTTAC
* * * *
34165989 GCATTCTGCCTCTCCGGTCGGCTGAGCACCC
128 GCATTATGCCTCTCCGCTCAGCTCAGCACCC
* *
34166020 GCACGCTAGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCAATGTCTAAGCA
1 GCACGCTAGTTTCGTGGGTTTGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
34166076 TACGGAGTTC
Statistics
Matches: 174, Mismatches: 31, Indels: 18
0.78 0.14 0.08
Matches are distributed among these distances:
157 3 0.02
158 94 0.54
159 71 0.41
160 5 0.03
161 1 0.01
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (158 bp):
GCACGCTAGTTTCGTGGGTTTGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGA
ACCAAGCGTTAGGTAGCAGGACCGACAGCACACAAGCGGGACCGAGCCGATCCTCGGCTTACGCA
TTATGCCTCTCCGCTCAGCTCAGCACCC
Found at i:34166302 original size:13 final size:13
Alignment explanation
Indices: 34166284--34166309 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
34166274 TGGCTGGCAC
34166284 TTGGCCCCCTATA
1 TTGGCCCCCTATA
34166297 TTGGCCCCCTATA
1 TTGGCCCCCTATA
34166310 CCCTCATCCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.38, G:0.15, T:0.31
Consensus pattern (13 bp):
TTGGCCCCCTATA
Found at i:34166936 original size:26 final size:26
Alignment explanation
Indices: 34166900--34166952 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
34166890 GTTGGCTTAG
* **
34166900 GCATACGGAGTTCATTCCTTGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
34166926 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
34166952 G
1 G
34166953 ATCGGACGGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:34167838 original size:213 final size:213
Alignment explanation
Indices: 34167452--34167851 Score: 512
Period size: 213 Copynumber: 1.9 Consensus size: 213
34167442 CCCGTTTTGT
* ** * * *
34167452 GGGTTGGCTTAGGCATAGGGAGTTCATTTCATGTTTAAGCCCCAGCCGGACAGAGGGTTGTGGCA
1 GGGTTGACTTAGGCATACAGAGTTCATTCCAAGTCTAAGCCCCAGCCGGACAGAGGGTTGTGGCA
* * * * * ** *
34167517 GCGGGATTGGTAGCACGTAGAGGGGGACCGGGCCAATCCTTGGCTTGCGCCTTATGCCTCTTTGG
66 GCAGGACTGGCAGCACGCAGAGGGGGACCAGGCCAATCCTCAGCTTGCGCATTATGCCTCTTTGG
* * ** * * *
34167582 TAGGCTCAGCGCCCGTACGCTCGTTTCATGGGTTGACTTATGCATATGGAGTTCATTCCCAGTCT
131 TAGACTCAACGCCCACACGCTCATCTCATGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCT
34167647 TAGATCAAATCAGACCGA
196 TAGATCAAATCAGACCGA
* * * * *
34167665 GGGTTGACTTATGCATACAGAGTTCATTCCAAGTCTATGCCCCAGTCGGACCGAGGGTTGTGGTA
1 GGGTTGACTTAGGCATACAGAGTTCATTCCAAGTCTAAGCCCCAGCCGGACAGAGGGTTGTGGCA
* * **
34167730 GCAGGACTGGCAGTACGCAGAGGGGGATCAGGCTGATCCTCAGCTTGCGCATTATGCCTCTTTGG
66 GCAGGACTGGCAGCACGCAGAGGGGGACCAGGCCAATCCTCAGCTTGCGCATTATGCCTCTTTGG
* *
34167795 TCGATTCAACGCCCACACGCTCATCTCATGGGTTGACTTATGCATACGGAGTTCATT
131 TAGACTCAACGCCCACACGCTCATCTCATGGGTTGACTTATGCATACGGAGTTCATT
34167852 ACTAGTCTAA
Statistics
Matches: 155, Mismatches: 32, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
213 155 1.00
ACGTcount: A:0.20, C:0.24, G:0.29, T:0.27
Consensus pattern (213 bp):
GGGTTGACTTAGGCATACAGAGTTCATTCCAAGTCTAAGCCCCAGCCGGACAGAGGGTTGTGGCA
GCAGGACTGGCAGCACGCAGAGGGGGACCAGGCCAATCCTCAGCTTGCGCATTATGCCTCTTTGG
TAGACTCAACGCCCACACGCTCATCTCATGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCT
TAGATCAAATCAGACCGA
Found at i:34169049 original size:159 final size:157
Alignment explanation
Indices: 34168886--34169247 Score: 365
Period size: 158 Copynumber: 2.3 Consensus size: 157
34168876 ACCTGTTTCA
* * *** * *
34168886 TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCTGGACCGAGGGTTGTGGT
1 TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCATA-CCAAACCGAAGGTTGTGGC
* ** * * *
34168951 AGTGAGACCTG-CAGCATGTAGAGGGGGACCGGGCCGATCCCTAGCTTGCACATTTTGCCTCTTC
65 AGTAAGA-CTGACAGCACATA-AGGGGGACCGAGCCGATCCCTAGCTTGCACATTCTGCCTCTCC
* * *
34169015 G-GTCGGCTCAGCGCCCGCATACTCATCTCG
128 GACT-GACTCAGCGCCCGCACACTCATCTCG
* * *
34169045 TGGGTTGACTTATGCATACGGAGTTCATTCCCA-GTCTAAGATCATACCAAACCGAAGGTTGTGG
1 TGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAG-CCATACCAAACCGAAGGTTGTGG
* * *
34169109 CAGTAAGATTGACAGCACATAAGGGGGACCGAGCTGATCCCTGGCTTGCACATTCTGCCTCTCCG
64 CAGTAAGACTGACAGCACATAAGGGGGACCGAGCCGATCCCTAGCTTGCACATTCTGCCTCTCCG
* * * * * *
34169174 ACTGACTGAGCGCTCGCACGCTCGTTTTG
129 ACTGACTCAGCGCCCGCACACTCATCTCG
*
34169203 TGGGTTAGG-TTAGGCATACAGAGTTCATTCCATGTCTAAG-CATAC
1 TGGGTT-GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCATAC
34169248 GGAGTTCATT
Statistics
Matches: 166, Mismatches: 31, Indels: 15
0.78 0.15 0.07
Matches are distributed among these distances:
156 5 0.03
157 3 0.02
158 90 0.54
159 62 0.37
160 6 0.04
ACGTcount: A:0.21, C:0.25, G:0.28, T:0.26
Consensus pattern (157 bp):
TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCATACCAAACCGAAGGTTGTGGCA
GTAAGACTGACAGCACATAAGGGGGACCGAGCCGATCCCTAGCTTGCACATTCTGCCTCTCCGAC
TGACTCAGCGCCCGCACACTCATCTCG
Found at i:34169252 original size:26 final size:26
Alignment explanation
Indices: 34169216--34169268 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34169206 GTTAGGTTAG
34169216 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
34169242 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
34169268 G
1 G
34169269 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:34169975 original size:26 final size:26
Alignment explanation
Indices: 34169939--34169991 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
34169929 GTTGACTTAG
34169939 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
*
34169965 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
34169991 G
1 G
34169992 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGTCTAA
Found at i:34170391 original size:146 final size:147
Alignment explanation
Indices: 34170158--34170429 Score: 359
Period size: 146 Copynumber: 1.9 Consensus size: 147
34170148 GCAGTGGGAC
* * * * *
34170158 CGACAGCACACAGAGGGGGATCAAGCCGATCCCCGACTTGCGCATTATGCCTCTCCGATCGGCTC
1 CGACAGCACACAGAGGGGGACCAAGCCGATCCCCGACTTACGCATTAGGCCTCTCCGACCGACTC
* * * *
34170223 AGCACTTGCACGCTCGTTTCATGGGTTGACTTAGGGATACAGAGTTCATTCCCAGTCTAAGATCG
66 AGCACTCGCACGCTCGTTTCATGGGTTGACTTAGGCAAACAGAGTTCATTCCAAGTCTAAGATCG
34170288 GATCGTACCGAGGGTTG
131 GATCGTACCGAGGGTTG
* * * * * * *
34170305 CGACAGCACGCAG-GGGGGACCAGGCCGATCCCTGACTTACGTATTCGGCCTCTCCGGCCGACTG
1 CGACAGCACACAGAGGGGGACCAAGCCGATCCCCGACTTACGCATTAGGCCTCTCCGACCGACTC
* *
34170369 AGCA-TCCGCACGCTCGTTTCATGGGTTGGCTTAGGCAAACAGAGTTCATTCCAAGTTTAAG
66 AGCACT-CGCACGCTCGTTTCATGGGTTGACTTAGGCAAACAGAGTTCATTCCAAGTCTAAG
34170430 CATACGGAGT
Statistics
Matches: 106, Mismatches: 18, Indels: 3
0.83 0.14 0.02
Matches are distributed among these distances:
145 1 0.01
146 93 0.88
147 12 0.11
ACGTcount: A:0.21, C:0.29, G:0.28, T:0.22
Consensus pattern (147 bp):
CGACAGCACACAGAGGGGGACCAAGCCGATCCCCGACTTACGCATTAGGCCTCTCCGACCGACTC
AGCACTCGCACGCTCGTTTCATGGGTTGACTTAGGCAAACAGAGTTCATTCCAAGTCTAAGATCG
GATCGTACCGAGGGTTG
Found at i:34170817 original size:26 final size:26
Alignment explanation
Indices: 34170787--34170839 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
34170777 GTTGACTTAG
34170787 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* * *
34170813 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
34170839 G
1 G
34170840 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:34171576 original size:25 final size:26
Alignment explanation
Indices: 34171548--34171598 Score: 86
Period size: 25 Copynumber: 2.0 Consensus size: 26
34171538 TTGACTTAGC
*
34171548 CATACAGAGTTCA-TCCCAGTCTAAG
1 CATACAGAGTTCATTCCCAATCTAAG
34171573 CATACAGAGTTCATTCCCAATCTAAG
1 CATACAGAGTTCATTCCCAATCTAAG
34171599 ATCAGACTGA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 13 0.54
26 11 0.46
ACGTcount: A:0.33, C:0.27, G:0.14, T:0.25
Consensus pattern (26 bp):
CATACAGAGTTCATTCCCAATCTAAG
Found at i:34171979 original size:159 final size:159
Alignment explanation
Indices: 34171701--34171990 Score: 332
Period size: 159 Copynumber: 1.8 Consensus size: 159
34171691 GCTAACTGCC
* *
34171701 CGCACACCCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAATCGA
1 CGCACACCCGTTTCGTGGGTTGGCTGAGGCATAAGGAGTTCATTACATGTCTAAGCCCCAATCGA
* * * * ** * *
34171766 ACCGAGGGTTGTGGCAACGGGACCGGCAGCACGCAAAGGGGGACCGAGCTGATCCTCGGCTTGCA
66 ACCGAGGGTTATGGCAACGAGACCGACAGCACACAAAGGAAGACCGAGCTGATCCCCGACTTGCA
34171831 CATTTTGCCTCTTGGGCCGGCTGAGCACT
131 CATTTTGCCTCTTGGGCCGGCTGAGCACT
* * * * *
34171860 CGCACGCCTGTTTTGTGGGTTGGCTGAGGCATAGGGAGTTCATTACATGTCTAAGCCCC-AGCTG
1 CGCACACCCGTTTCGTGGGTTGGCTGAGGCATAAGGAGTTCATTACATGTCTAAGCCCCAATC-G
* * ** ** * * *
34171924 GATCGAGGGTTATGGCAGTGAGATTGATAGCACACAGAGGAAGACCG-GGTCGATCCCCGACTTG
65 AACCGAGGGTTATGGCAACGAGACCGACAGCACACAAAGGAAGACCGAGCT-GATCCCCGACTTG
34171988 CAC
129 CAC
34171991 CGATCCCCAT
Statistics
Matches: 105, Mismatches: 24, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
158 4 0.04
159 101 0.96
ACGTcount: A:0.21, C:0.26, G:0.31, T:0.22
Consensus pattern (159 bp):
CGCACACCCGTTTCGTGGGTTGGCTGAGGCATAAGGAGTTCATTACATGTCTAAGCCCCAATCGA
ACCGAGGGTTATGGCAACGAGACCGACAGCACACAAAGGAAGACCGAGCTGATCCCCGACTTGCA
CATTTTGCCTCTTGGGCCGGCTGAGCACT
Found at i:34173086 original size:26 final size:25
Alignment explanation
Indices: 34173056--34173107 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
34173046 GTTGGCTTAG
34173056 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCA-GTCTAA
*
34173082 GCATATGGAGTTCATTCCAGTCTAA
1 GCATACGGAGTTCATTCCAGTCTAA
34173107 G
1 G
34173108 ATCAAATTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCAGTCTAA
Found at i:34173472 original size:26 final size:26
Alignment explanation
Indices: 34173436--34173488 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
34173426 GTTGACTTAG
34173436 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
*
34173462 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
34173488 G
1 G
34173489 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATATGGAGTTCATCCCCAGTCTAA
Found at i:34173802 original size:158 final size:158
Alignment explanation
Indices: 34173500--34173962 Score: 380
Period size: 158 Copynumber: 2.9 Consensus size: 158
34173490 TCAGACTGGG
* * * *
34173500 CCGAGGGTTGCGACAGTAGGATTGACAGCACGCAGGGGGGACAAGGTCGATCCCCGGCTTGTGCA
1 CCGAGGGTTGCGACAGCAGGATCGACAGCACACAGGGGGGACAAGGTCGATCCCCGGCTTGCGCA
* * **
34173565 TTCTGCCTCTCCGGTCGGCTAAGCGCCCGCACGCCCATTTGATGGGTTCGCTTAGGCATAGGGAG
66 TTATGCCTCTCCGATCGGCTAAGCGCCCGCACGCCCATTTGATGGGTTCGCTTAGGCATACAGAG
* *
34173630 TTCATTTCATGTCTAAGCCCCAGCCAGA
131 TGCATTCCATGTCTAAGCCCCAGCCAGA
* * * ** *
34173658 CCGAGGGTTGTGTCAGCGGGATCGACAGCACACAGAGGGGGACCGGGTCGAT-CCTGGCTTGCGC
1 CCGAGGGTTGCGACAGCAGGATCGACAGCACACAG-GGGGGACAAGGTCGATCCCCGGCTTGCGC
* * * *
34173722 ATTATGCCTCTCCGATCGGCTCAGTGCCCGCATGCTCATTTCG-TGGGTT-GACTTAGGCATACA
65 ATTATGCCTCTCCGATCGGCTAAGCGCCCGCACGCCCATTT-GATGGGTTCG-CTTAGGCATACA
**** * *
34173785 GAGTGCATTCCCA-GTCTAAGATTGAACTAGA
128 GAGTGCATT-CCATGTCTAAGCCCCAGCCAGA
* * * * * * ** * * * * ** *
34173816 CCGAGGTTTACG-TAGTAGGATCAACAGTATGCAGGGTGGACCAGGTGGGTCCCCGATTTGTGCA
1 CCGAGGGTTGCGACAGCAGGATCGACAGCACACAGGGGGGACAAGGTCGATCCCCGGCTTGCGCA
* * * * * * * *
34173880 TTTTGCCTCTCCGATCGACTGAGCGCCCGCACGCTCGTTTCG-TTGGTTGGCTTAGGCATACGGA
66 TTATGCCTCTCCGATCGGCTAAGCGCCCGCACGCCCATTT-GATGGGTTCGCTTAGGCATACAGA
* *
34173944 GTTCATTCCATGTGTAAGC
130 GTGCATTCCATGTCTAAGC
34173963 ATACGAAGTT
Statistics
Matches: 243, Mismatches: 55, Indels: 15
0.78 0.18 0.05
Matches are distributed among these distances:
156 15 0.06
157 91 0.37
158 120 0.49
159 17 0.07
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.24
Consensus pattern (158 bp):
CCGAGGGTTGCGACAGCAGGATCGACAGCACACAGGGGGGACAAGGTCGATCCCCGGCTTGCGCA
TTATGCCTCTCCGATCGGCTAAGCGCCCGCACGCCCATTTGATGGGTTCGCTTAGGCATACAGAG
TGCATTCCATGTCTAAGCCCCAGCCAGA
Found at i:34173972 original size:26 final size:26
Alignment explanation
Indices: 34173935--34173993 Score: 109
Period size: 26 Copynumber: 2.3 Consensus size: 26
34173925 GTTGGCTTAG
*
34173935 GCATACGGAGTTCATTCCATGTGTAA
1 GCATACGAAGTTCATTCCATGTGTAA
34173961 GCATACGAAGTTCATTCCATGTGTAA
1 GCATACGAAGTTCATTCCATGTGTAA
34173987 GCATACG
1 GCATACG
34173994 GACCGAGGGT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 32 1.00
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATGTGTAA
Found at i:34174163 original size:26 final size:26
Alignment explanation
Indices: 34174127--34174179 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34174117 GTTGGCTTAG
*
34174127 GCATAGGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
34174153 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
34174179 G
1 G
34174180 ATCGAACTGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:34174521 original size:171 final size:170
Alignment explanation
Indices: 34174153--34174521 Score: 366
Period size: 171 Copynumber: 2.2 Consensus size: 170
34174143 CCATGTCTAA
*
34174153 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACTGAATCGAGGGTTGTGGTAAGAGGACCAGCA
1 GCATACGGAGTTCA-TCCCAGTCTAAGACCGAACTGAATCGAGGGTTGTGGTAAGAGGACCAGCA
* * * * * * *
34174218 TCAGGATCGGTAGCACGCAGTGGGGGATCAGGCTGATCCCCGGCTTGCACATTCTACCTCTCCGG
65 TCAGGATCGGCAGCACACAGAGGGGGACCAGGCTAATCCCCGGCTTGCACATTATACCTCTCCAG
* * * * * * * *
34174283 TCGGTTGGGCACCCGTATGTTCCTTTCGTGGGTTGGCTTAG
130 CCGGCTGAGCACCCGCACGCTCCTTTCATGGGTTGACTTAG
* *** * * *
34174324 GCATACAGAGTTCATTTTATGTCTAAGACCTAGCTGGATCGAGGGTTGTGG-AAGCAGGACC-GA
1 GCATACGGAGTTCATCCCA-GTCTAAGACCGAACTGAATCGAGGGTTGTGGTAAG-AGGACCAG-
* * * ** *
34174387 CAGT-GGGATTGGCAGCACACAGAGGGGGACCAGGCTAATCCCCTGCTTGTGCATTATGCCTCTC
63 CA-TCAGGATCGGCAGCACACAGAGGGGGACCAGGCTAATCCCCGGCTTGCACATTATACCTCTC
* * * *
34174451 CAGCCTGCTGAGCGCTCGCACGCTCGTTTCATGGGTTGACTTAG
127 CAGCCGGCTGAGCACCCGCACGCTCCTTTCATGGGTTGACTTAG
34174495 GCATACGGAGTTCATCCCCAGTCTAAG
1 GCATACGGAGTTCAT-CCCAGTCTAAG
34174522 CATCTGTAGT
Statistics
Matches: 156, Mismatches: 37, Indels: 10
0.77 0.18 0.05
Matches are distributed among these distances:
170 6 0.04
171 148 0.95
172 2 0.01
ACGTcount: A:0.21, C:0.25, G:0.30, T:0.25
Consensus pattern (170 bp):
GCATACGGAGTTCATCCCAGTCTAAGACCGAACTGAATCGAGGGTTGTGGTAAGAGGACCAGCAT
CAGGATCGGCAGCACACAGAGGGGGACCAGGCTAATCCCCGGCTTGCACATTATACCTCTCCAGC
CGGCTGAGCACCCGCACGCTCCTTTCATGGGTTGACTTAG
Found at i:34174828 original size:95 final size:95
Alignment explanation
Indices: 34174659--34174849 Score: 355
Period size: 95 Copynumber: 2.0 Consensus size: 95
34174649 CAACCCGTTT
34174659 CATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATATCTAAGCCCCAGCCAGACTGAGGGTTGCG
1 CATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATATCTAAGCCCCAGCCAGACTGAGGGTTGCG
* *
34174724 ACAGTAGGACCGATAGCATGCAGAGGGGGA
66 ACAGCAGGACCGATAGCACGCAGAGGGGGA
34174754 CATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATATCTAAGCCCCAGCCAGACTGAGGGTTGCG
1 CATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATATCTAAGCCCCAGCCAGACTGAGGGTTGCG
*
34174819 GCAGCAGGACCGATAGCACGCAGAGGGGGA
66 ACAGCAGGACCGATAGCACGCAGAGGGGGA
34174849 C
1 C
34174850 CAGGTCGATC
Statistics
Matches: 93, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
95 93 1.00
ACGTcount: A:0.25, C:0.23, G:0.34, T:0.19
Consensus pattern (95 bp):
CATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATATCTAAGCCCCAGCCAGACTGAGGGTTGCG
ACAGCAGGACCGATAGCACGCAGAGGGGGA
Found at i:34175043 original size:159 final size:159
Alignment explanation
Indices: 34174754--34175113 Score: 373
Period size: 159 Copynumber: 2.3 Consensus size: 159
34174744 CAGAGGGGGA
* * * ** * * ** *
34174754 CATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATATCTAAGCCCCAGCCAGA-CTGAGGGTTGC
1 CATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGATCGAACTGGATC-AAGGGTTGC
* * * * * *
34174818 GGCAGCAGGACCGATAGCACGCAGAGGGGGACCAGGTCGATCCCCAGCTTGCGTATTATGCCTCT
65 GGCAGCAAGACCGACAGCACGCAGAGGGGGACCAGGCCAATCCCCAGCTTGCGCATTATACCTCT
* *
34174883 TCGGCCAGCTCAGCGCCCGCACGCTCGTTT
130 TCGGCCAGCTCAGCGCCCGCACACTCATTT
* * *
34174913 CATGGGTTGACTTATGCATACGGAGTTTATTCCCAT-TCTAAGATCGAACTGGATCAAGGGTTGT
1 CATGGGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAAGATCGAACTGGATCAAGGGTTGC
* * * * * * *
34174977 GGTAGCAAGATCGACAGCACGCAGTGGGGGATCGGGCCAATTCCCAGCTTGCGCATTCTACCTCT
65 GGCAGCAAGACCGACAGCACGCAGAGGGGGACCAGGCCAATCCCCAGCTTGCGCATTATACCTCT
* * * *
34175042 TCGGTCGGCTGAGCGCCCGCACATTCATTT
130 TCGGCCAGCTCAGCGCCCGCACACTCATTT
* * *
34175072 CGTGGGTTGCCTTAGGCATATGGAGTTCATTCCATGTCTAAG
1 CATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAG
34175114 CATACGGAGT
Statistics
Matches: 162, Mismatches: 36, Indels: 6
0.79 0.18 0.03
Matches are distributed among these distances:
158 4 0.02
159 153 0.94
160 5 0.03
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (159 bp):
CATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGATCGAACTGGATCAAGGGTTGCG
GCAGCAAGACCGACAGCACGCAGAGGGGGACCAGGCCAATCCCCAGCTTGCGCATTATACCTCTT
CGGCCAGCTCAGCGCCCGCACACTCATTT
Found at i:34175123 original size:26 final size:26
Alignment explanation
Indices: 34175087--34175139 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34175077 GTTGCCTTAG
*
34175087 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
34175113 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
34175139 G
1 G
34175140 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:34177229 original size:26 final size:26
Alignment explanation
Indices: 34177200--34177251 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
34177190 CAGTTCGATA
34177200 TTAGACTGGGAATGAACT-TCGTATGC
1 TTAGACTGGGAATGAACTCT-GTATGC
*
34177226 TTAGACTGGGGATGAACTCTGTATGC
1 TTAGACTGGGAATGAACTCTGTATGC
34177252 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.15, G:0.29, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCTGTATGC
Found at i:34177970 original size:26 final size:26
Alignment explanation
Indices: 34177932--34177984 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
34177922 GGCTCAAAAT
34177932 CTTAGACTGGGAAAGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
* *
34177958 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAAAGAACTCCGTATG
34177984 C
1 C
34177985 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCGTATG
Found at i:34178355 original size:160 final size:157
Alignment explanation
Indices: 34177957--34178389 Score: 399
Period size: 159 Copynumber: 2.7 Consensus size: 157
34177947 AACTCCGTAT
* **
34177957 GCTTAGACATGGAATGAACT-CTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGCCGCTCA
1 GCTTAGACATGGAATGAACTCCT-TATGCCAAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCA
* * * * * * *
34178021 GCCAGCCGGAGAGGCAGAACGTGTAAACCGGGGATCGGCCTAGTCCCCCCATGCATGCTATCGAT
65 GCGA-TCGGAGAGGCAGAATGCGTAAACCGGGGATCGCCCGA-TCCCCCCATACATGCTATCGAT
* *
34178086 CCTGCTGCCACAACCCTCGGTCTAGTCCGA
128 CCTGCTGCCACAACCCTCGGTCCAGTCAGA
* * * * * ** *
34178116 TCTTAGAC-TGGGAATGAACTCCGTATG-CATAAGTCAACCCACGAAATGAGCGTATGGGTGCTG
1 GCTTAGACAT-GGAATGAACTCCTTATGCCA-AAGCCAACCCATGAAACGAGCGTGCGGGTGCTC
* * * ** * *
34178179 AGCCGATCGAAGAGGCATAATGCGCAAACCGGGGATCAGCCCGATCCCCCTTTACGTGCTGTC-A
64 AG-CGATCGGAGAGGCAGAATGCGTAAACCGGGGATC-GCCCGATCCCCCCATACATGCTATCGA
* * * *
34178243 GTCTTGCTGCCACAACCCTCGATTCC-GGCTAGG
127 -TCCTGCTGCCACAACCCTCG-GTCCAGTC-AGA
* *
34178276 GCTTAGACATGGAATGAACTCCTTATGCCAAAGCCAACCCATGAAACGGGCCTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCTTATGCCAAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAG
***
34178341 CTGATCGGAGAGGCAGAATGCGTAAGTTGGGGATCGGCCCGATCCCCCC
66 C-GATCGGAGAGGCAGAATGCGTAAACCGGGGATC-GCCCGATCCCCCC
34178390 TGCGTGCTGC
Statistics
Matches: 214, Mismatches: 49, Indels: 21
0.75 0.17 0.07
Matches are distributed among these distances:
158 3 0.01
159 109 0.51
160 99 0.46
161 3 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCTTATGCCAAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAG
CGATCGGAGAGGCAGAATGCGTAAACCGGGGATCGCCCGATCCCCCCATACATGCTATCGATCCT
GCTGCCACAACCCTCGGTCCAGTCAGA
Found at i:34179365 original size:26 final size:26
Alignment explanation
Indices: 34179336--34179388 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
34179326 CCAGTCCAAT
*
34179336 CTTAGAC-TGGGAATGAACTCCATATG
1 CTTAGACAT-GGAATAAACTCCATATG
*
34179362 CTTAGACATGGAATAAACTCCGTATG
1 CTTAGACATGGAATAAACTCCATATG
34179388 C
1 C
34179389 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATAAACTCCATATG
Found at i:34179491 original size:184 final size:184
Alignment explanation
Indices: 34179177--34179539 Score: 483
Period size: 184 Copynumber: 2.0 Consensus size: 184
34179167 TTCGGTTGGG
* * * *
34179177 GCTTAGACATGGAATGAACTATGTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGACGCTCAG
1 GCTTAGACATGGAATAAACTACGTATGCCTAAGCCAACCCATGAAACAAGCATGCGGACACTCAG
* * * *
34179242 CCGGACAGAGAGGTAGAATGCGCAAGCCAAGAATCGGCCCGGTCCCCCCTGTGTGCTACCGATCC
66 CCGGACAGAGAGGCAGAATGCGCAAGCCAAGAATCAGCCCGATCCCCCCTGCGTGCTACCGATCC
34179307 TACTGCCGCAACCCTCGATCCAGTCCAATCTTAGACTGGGAATGAACTCCATAT
131 TACTGCCGCAACCCTCGATCCAGTCCAATCTTAGACTGGGAATGAACTCCATAT
* ** * *
34179361 GCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCATGCGGGCATTCAG
1 GCTTAGACATGGAATAAACTACGTATGCCTAAGCCAACCCATGAAACAAGCATGCGGACACTCAG
* *** * * **
34179426 CCGGTCAGAGAGGCAGAATGCGCAAGCTGGGGATCAGCCCGATCCCCTCTGCGTGCTGTCGATCC
66 CCGGACAGAGAGGCAGAATGCGCAAGCCAAGAATCAGCCCGATCCCCCCTGCGTGCTACCGATCC
* * * ** *
34179491 TACTGTCGCAACCCTTGGTCTGGTCCGATCTTAGACTGGGAATGAACTC
131 TACTGCCGCAACCCTCGATCCAGTCCAATCTTAGACTGGGAATGAACTC
34179540 TGTATGCCTA
Statistics
Matches: 152, Mismatches: 27, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
184 152 1.00
ACGTcount: A:0.26, C:0.29, G:0.25, T:0.20
Consensus pattern (184 bp):
GCTTAGACATGGAATAAACTACGTATGCCTAAGCCAACCCATGAAACAAGCATGCGGACACTCAG
CCGGACAGAGAGGCAGAATGCGCAAGCCAAGAATCAGCCCGATCCCCCCTGCGTGCTACCGATCC
TACTGCCGCAACCCTCGATCCAGTCCAATCTTAGACTGGGAATGAACTCCATAT
Found at i:34180131 original size:159 final size:159
Alignment explanation
Indices: 34179840--34180132 Score: 331
Period size: 159 Copynumber: 1.8 Consensus size: 159
34179830 AACTCCGTAT
* * * * * *
34179840 GCTTAGACATGGAATTAACTCTGTATGCCTAAGCCAACCCACGAAACGAGGGTGCGGGTGCTGAG
1 GCTTAGACATGGAATGAACTCTGTACGCCTAAACCAACCCACAAAACGAGGGTGCGGGCGCTCAG
* * * * * *
34179905 CCGGTCGGAGAGGCATAATAAGCAAGCCGAGGATCGACCCGATCCCTCTCTGTGAGCTATCGGTC
66 CCGGTCGAAGAGGCAGAATAAGCAAGCCGAGGATCGACCCGATCCCTCCCTGCGACCTATCGATC
34179970 CTGCCGCCACAACCCTAGGTCTGGCTAGG
131 CTGCCGCCACAACCCTAGGTCTGGCTAGG
* *
34179999 GCTTAGAGATGGAATGAACT-TCGTACGCCTAAACCAACCCACAAAACGAGTGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCT-GTACGCCTAAACCAACCCACAAAACGAGGGTGCGGGCGCTCA
* * ** * * * * *
34180063 GCTGGTCGAAGAGGTAGAATGCGCAAGCCGGGGATC-AGCTCGGTCTCC-CCCTGCGTCCTGTCG
65 GCCGGTCGAAGAGGCAGAATAAGCAAGCCGAGGATCGA-CCCGATC-CCTCCCTGCGACCTATCG
34180126 ATCCTGC
128 ATCCTGC
34180133 TGCTGGTCCT
Statistics
Matches: 108, Mismatches: 23, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
158 2 0.02
159 104 0.96
160 2 0.02
ACGTcount: A:0.24, C:0.29, G:0.29, T:0.19
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCTGTACGCCTAAACCAACCCACAAAACGAGGGTGCGGGCGCTCAG
CCGGTCGAAGAGGCAGAATAAGCAAGCCGAGGATCGACCCGATCCCTCCCTGCGACCTATCGATC
CTGCCGCCACAACCCTAGGTCTGGCTAGG
Found at i:34180201 original size:26 final size:26
Alignment explanation
Indices: 34180172--34180222 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
34180162 CGGTCCGATC
*
34180172 TTAGAC-TGGGAATGAACTCCGTATGA
1 TTAGACAT-GGAATGAACTCCATATGA
*
34180198 TTAGACATGGAATGCACTCCATATG
1 TTAGACATGGAATGAACTCCATATG
34180223 CCTAAGACAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (26 bp):
TTAGACATGGAATGAACTCCATATGA
Found at i:34180454 original size:356 final size:356
Alignment explanation
Indices: 34179783--34180454 Score: 818
Period size: 356 Copynumber: 1.9 Consensus size: 356
34179773 GTGCTGTCGA
* * *
34179783 TCCTGCTGTCGTAACCCTCGGTTCGATCTGATCTTACACTAGGAATGAACTCCGTATGCTTAGAC
1 TCCTGCTGTCGTAACCCTCGGTCCGATCCGATCTTACACTAGGAATGAACTCCGTATGATTAGAC
* ** * * * * * *
34179848 ATGGAATTAACTCTGTATGCCTAAGCCAACCCACGAAACGAGGGTGCGGGTGCTGAGCCGGTCGG
66 ATGGAATGAACTCCATATGCCTAAGACAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGATCGG
* * ** * *
34179913 AGAGGCATAATAAGCAAGCCGAGGATCGACCCGATCCCTCTCTGTGAGCTATCGGTCCTGCCGCC
131 AGAGGCAGAATAAGCAAGCCGAGGATCGACCCGATCCCCCTCTACGAGCTATCGATCCTGCCACC
* *
34179978 ACAACCCTAGGTCTGGCTAGGGCTTAGAGATGGAATGAACTTCGTACGCCTAAACCAACCCACAA
196 ACAACCCTAGGTCTGGCTAGAGCTTAGAGATGGAATGAACTCCGTACGCCTAAACCAACCCACAA
* * *
34180043 AACGAGTGTGCGGGCGCTCAGCTGGTCGAAGAGGTAGAATGCGCAAGCCGGGGATCAGCTCGGTC
261 AACGAGCGTGCGGGCGCTCAGCCGGTCGAAGAGGTAGAATGCACAAGCCGGGGATCAGCTCGGTC
34180108 TCCCCCTGCGTCCTGTCGATCCTGCTGCTGG
326 TCCCCCTGCGTCCTGTCGATCCTGCTGCTGG
* * * *
34180139 TCCTGCTGTCGTAACCCTTGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGATTAGAC
1 TCCTGCTGTCGTAACCCTCGGTCCGATCCGATCTTACACTAGGAATGAACTCCGTATGATTAGAC
*
34180204 ATGGAATGCACTCCATATGCCTAAGACAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGATCGG
66 ATGGAATGAACTCCATATGCCTAAGACAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGATCGG
* * *
34180269 AGAGGCAGAATGCA-CAAGCC-AGGGA-CTGACCCGATCGCCCCT-TACGTGCTGTCGATCCTGC
131 AGAGGCAGAAT-AAGCAAGCCGA-GGATC-GACCCGATC-CCCCTCTACGAGCTATCGATCCTGC
* ** * * * * **
34180330 TACCGTAACCCTCGGT-TCGGTCTA-ATCTTAGA-CTGGGAATGAACTCCGTATGCCTAAGTCAA
192 CACCACAACCCTAGGTCT-GG-CTAGAGCTTAGAGAT-GGAATGAACTCCGTACGCCTAAACCAA
** * * * *
34180392 CCCATGAAACGAGCGTGCGGGCGCTGAGCCGGTCGGAGAGGTATAATGCACAAGCTGGGGATC
254 CCCACAAAACGAGCGTGCGGGCGCTCAGCCGGTCGAAGAGGTAGAATGCACAAGCCGGGGATC
34180455 GGCCCGATTG
Statistics
Matches: 263, Mismatches: 46, Indels: 14
0.81 0.14 0.04
Matches are distributed among these distances:
355 4 0.02
356 251 0.95
357 8 0.03
ACGTcount: A:0.24, C:0.28, G:0.28, T:0.21
Consensus pattern (356 bp):
TCCTGCTGTCGTAACCCTCGGTCCGATCCGATCTTACACTAGGAATGAACTCCGTATGATTAGAC
ATGGAATGAACTCCATATGCCTAAGACAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGATCGG
AGAGGCAGAATAAGCAAGCCGAGGATCGACCCGATCCCCCTCTACGAGCTATCGATCCTGCCACC
ACAACCCTAGGTCTGGCTAGAGCTTAGAGATGGAATGAACTCCGTACGCCTAAACCAACCCACAA
AACGAGCGTGCGGGCGCTCAGCCGGTCGAAGAGGTAGAATGCACAAGCCGGGGATCAGCTCGGTC
TCCCCCTGCGTCCTGTCGATCCTGCTGCTGG
Found at i:34180582 original size:159 final size:159
Alignment explanation
Indices: 34180198--34180584 Score: 397
Period size: 159 Copynumber: 2.4 Consensus size: 159
34180188 CTCCGTATGA
*
34180198 TTAGACATGGAATGCACTCCATATGCCTAAGACAACCCACGAAACGAGCGTGCAGGCGCTCAGCC
1 TTAGACATGGAATGAACTCCATATGCCTAAGACAACCCACGAAACGAGCGTGCAGGCGCTCAGCC
* ** *
34180263 GATCGGAGAGGCAGAATGCACAAGCCAGGGACTGACCCGATCGCCCCTTACGTGCTGTCGATCCT
66 GGTCGGAGAGGCAGAATGCACAAGCCAGGGACTGACCCGATCGCCCCTTACGTGCTACCGATCCC
** * * *
34180328 GCTACCGTAACCCTCGGTTCGGTCTAATC
131 GCTACCACAACCCTCGGTTCCGACTAAGC
* * * * *
34180357 TTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTGAGC
1 TTAGACAT-GGAATGAACTCCATATGCCTAAGACAACCCACGAAACGAGCGTGCAGGCGCTCAGC
* * ** * * *
34180421 CGGTCGGAGAGGTATAATGCACAAGCTGGGGA-TCGGCCCGATTG-CCCTCTGCGTGCTACC-AG
65 CGGTCGGAGAGGCAGAATGCACAAGCCAGGGACT-GACCCGATCGCCCCT-TACGTGCTACCGA-
* * **
34180483 TCCCGCTGCCACAACCCTTGG-TCCGACTGGGGC
127 TCCCGCTACCACAACCCTCGGTTCCGACT-AAGC
* * * * * * *
34180516 TTAGACATGGAATGAACTCCCTATGTCTAAGCCAACCCACGAAACGGGCATGTAGGCACTCAGCC
1 TTAGACATGGAATGAACTCCATATGCCTAAGACAACCCACGAAACGAGCGTGCAGGCGCTCAGCC
34180581 GGTC
66 GGTC
34180585 CTGCTGCCAA
Statistics
Matches: 186, Mismatches: 36, Indels: 12
0.79 0.15 0.05
Matches are distributed among these distances:
158 12 0.06
159 173 0.93
160 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (159 bp):
TTAGACATGGAATGAACTCCATATGCCTAAGACAACCCACGAAACGAGCGTGCAGGCGCTCAGCC
GGTCGGAGAGGCAGAATGCACAAGCCAGGGACTGACCCGATCGCCCCTTACGTGCTACCGATCCC
GCTACCACAACCCTCGGTTCCGACTAAGC
Found at i:34180660 original size:100 final size:100
Alignment explanation
Indices: 34180482--34180661 Score: 288
Period size: 100 Copynumber: 1.8 Consensus size: 100
34180472 CGTGCTACCA
* * * *
34180482 GTCCCGCTGCCACAACCCTTGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGTCTAAG
1 GTCCCGCTGCCAAAACCCTCGGTCCGACTGGGGCTTAGACATGAAATGAACTCCCTATGCCTAAG
34180547 CCAACCCACGAAACGGGCATGTAGGCACTCAGCCG
66 CCAACCCACGAAACGGGCATGTAGGCACTCAGCCG
* * *
34180582 GTCCTGCTGCCAAAACCCTCGGTTCGACTGGGGCTTAGACATGAAATGAACTCCGTATGCCTAAG
1 GTCCCGCTGCCAAAACCCTCGGTCCGACTGGGGCTTAGACATGAAATGAACTCCCTATGCCTAAG
*
34180647 CCAACCCATGAAACG
66 CCAACCCACGAAACG
34180662 AGTGTGCGGG
Statistics
Matches: 72, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
100 72 1.00
ACGTcount: A:0.26, C:0.32, G:0.24, T:0.19
Consensus pattern (100 bp):
GTCCCGCTGCCAAAACCCTCGGTCCGACTGGGGCTTAGACATGAAATGAACTCCCTATGCCTAAG
CCAACCCACGAAACGGGCATGTAGGCACTCAGCCG
Found at i:34180674 original size:100 final size:100
Alignment explanation
Indices: 34180482--34180682 Score: 285
Period size: 100 Copynumber: 2.0 Consensus size: 100
34180472 CGTGCTACCA
* * * *
34180482 GTCCCGCTGCCACAACCCTTGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGTCTAAG
1 GTCCCGCTGCCAAAACCCTCGGTCCGACTGGGGCTTAGACATGAAATGAACTCCCTATGCCTAAG
* *
34180547 CCAACCCACGAAACGGGCATGTAGGCACTCAGCCG
66 CCAACCCACGAAACGAGCATGCAGGCACTCAGCCG
* * *
34180582 GTCCTGCTGCCAAAACCCTCGGTTCGACTGGGGCTTAGACATGAAATGAACTCCGTATGCCTAAG
1 GTCCCGCTGCCAAAACCCTCGGTCCGACTGGGGCTTAGACATGAAATGAACTCCCTATGCCTAAG
* ** *
34180647 CCAACCCATGAAACGAGTGTGCGGGCACTCAGCCG
66 CCAACCCACGAAACGAGCATGCAGGCACTCAGCCG
34180682 G
1 G
34180683 CCGGAGAGGT
Statistics
Matches: 88, Mismatches: 13, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
100 88 1.00
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.18
Consensus pattern (100 bp):
GTCCCGCTGCCAAAACCCTCGGTCCGACTGGGGCTTAGACATGAAATGAACTCCCTATGCCTAAG
CCAACCCACGAAACGAGCATGCAGGCACTCAGCCG
Found at i:34180809 original size:26 final size:26
Alignment explanation
Indices: 34180773--34180825 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
34180763 CTGGTTAGAT
34180773 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
34180799 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
34180825 C
1 C
34180826 CTAAGTCAAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34181547 original size:26 final size:26
Alignment explanation
Indices: 34181506--34181558 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34181496 CTAGTCTGAT
34181506 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
34181532 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
34181558 C
1 C
34181559 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:34181816 original size:368 final size:367
Alignment explanation
Indices: 34180578--34181975 Score: 1502
Period size: 368 Copynumber: 3.8 Consensus size: 367
34180568 TAGGCACTCA
* * * * * *
34180578 GCCGGTCCTGCTGCCAAAACCCTCGGTTCGACTGGGGCTTAGACATGAAATGAACTCCGTATGCC
1 GCCGGTCCTGCTACCACAACCCTCGATCCGACTGGGGCTTAAACATGGAATGAACTCCGTATGCC
* * *
34180643 TAAGCCAACCCATGAAACGAGTGTGCGGGCACTCAGCCGGCCGGAGAGGTAGAATCCGCAAGTCG
66 TAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGCCGG-CGGAGAGGCAGAATGCGCAAGTCG
* * * * *
34180708 GGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCCTGCTGCTGTAACCCTCGATCTGGT-TAGA
130 GGGATCGACCCGATCCCCCCTGCATGCTGCCGATCCTGCTGCCGTAACCCTCGGTCTGGTCT-GA
* *
34180772 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAAGC
194 TCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACC
* * * * * * *
34180837 CACGAAACGAGTGTACGAGCGCTCAGTCGGCCGGAAAGGCCGATCGGAGAGGCATAATGCGTAAG
259 CATGAAATGAGCGTGCGAGCGCTCAGTCGGCCGGAAAGGCTGGTCGAAGAGGCATAATGCGTAAG
* * * * *
34180902 CCGGAGATCAG-GTCGGTCCCCCTCTACGTGCTGTCGATCCCGCT
324 TCGGGGATCAGCCT-GATCCCCCTCTACGTGTTGTCGATCCCGCT
* * * **
34180946 GCCGATCCTGCTACCATAAACCTCGATCCGGTTGGGGCTTAAACATGGAATGAACTCCGTATGCC
1 GCCGGTCCTGCTACCACAACCCTCGATCCGACTGGGGCTTAAACATGGAATGAACTCCGTATGCC
* * **
34181011 TAAGCCAACCCATGAAA-GAGCATGTGGGCACTCAGCCGATTGGAGAGGCAGAATGCGCAAGAT-
66 TAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGCCG-GCGGAGAGGCAGAATGCGCAAG-TC
* * * * * * *
34181074 GGGGGTCGGCCCGATCCCCCCTGCGTGCTACCAAT-CTGCTGCCGTAA-CCTCGGTTTGGTCCGA
129 GGGGATCGACCCGATCCCCCCTGCATGCTGCCGATCCTGCTGCCGTAACCCTCGGTCTGGTCTGA
* ** * * *
34181137 TCTTAGAGTAGGAATGAACTCAATATGCTTCGACTGGGGATGAACTCCGTATGCCTAAGTGAACT
194 TCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACC
* *
34181202 CATGAAATGAGCGTGCGGGCGCTCAGTCGACCGGAAAGG-TCGGTCGAAGAGGCATAATGCGTAA
259 CATGAAATGAGCGTGCGAGCGCTCAGTCGGCCGGAAAGGCT-GGTCGAAGAGGCATAATGCGTAA
* * ** *
34181266 GTTGGGGATCTA-CCCGATCCCCCTCTGTGTGTTGTCGATCCTGCT
323 GTCGGGGATC-AGCCTGATCCCCCTCTACGTGTTGTCGATCCCGCT
* * * * *
34181311 GCCAGTCCTGCTACTACAACCCTCGGTCCGACTGGGGCTTAGACCTGGAATGAACTCCGTATGCC
1 GCCGGTCCTGCTACCACAACCCTCGATCCGACTGGGGCTTAAACATGGAATGAACTCCGTATGCC
* * * * * * *
34181376 TAAGCCAACCCATGAAACGAACGTGCGGGCACTCAGTCAGCTAGAGAGACAGAATGAGCAAGCCG
66 TAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGCCGGC-GGAGAGGCAGAATGCGCAAGTCG
* * * * *
34181441 GGGATCGACTCGATCCCCCTTGCATGCTGCCGATCCTGCTACCGCAACCCTCGGTCTAGTCTGAT
130 GGGATCGACCCGATCCCCCCTGCATGCTGCCGATCCTGCTGCCGTAACCCTCGGTCTGGTCTGAT
34181506 CTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCC
195 CTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCC
* ** * * * *
34181571 ATGAAATGAGCATGCGAGCGCTCAGTCGGTTGGAGAGGCTGGCCGAAGAGGCAAAATGTGTAAGT
260 ATGAAATGAGCGTGCGAGCGCTCAGTCGGCCGGAAAGGCTGGTCGAAGAGGCATAATGCGTAAGT
* *
34181636 CGGGGATCAGCCTGATCCCCCTCTACATGTTATCGATCCCGCT
325 CGGGGATCAGCCTGATCCCCCTCTACGTGTTGTCGATCCCGCT
** * * *
34181679 ATCGGTCCTACTACCACAACCCTCGATTCGATTGGGGCTTAAACATGGAATGAACTCCGTATGCC
1 GCCGGTCCTGCTACCACAACCCTCGATCCGACTGGGGCTTAAACATGGAATGAACTCCGTATGCC
* * ** * * * **
34181744 TAAGCCAACCCACGAAACGAGTGTGCGGGCGTTTAGCCGGCGAGAAAGGTAGAATGTTCAAGTCG
66 TAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGCCGGCG-GAGAGGCAGAATGCGCAAGTCG
* * *
34181809 AGGATCGACCC-AGTCCCCCCTGCATGCTGTCGATCCTACTATTGGTCATGCTACCGTAACCTTC
130 GGGATCGACCCGA-TCCCCCCTGCATGCTGCCGAT-C--C---T-G-C-TG---CCGTAACCCTC
* * * * * * *
34181873 GGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAT-GGAATAAACTCCATAT
182 GGTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGAC-TGGGGATGAACTCCGTAT
* * ** * *
34181937 GCCTAAGCCAACCCACGAAACAAGCGTGCGGGTGCTCAG
246 GCCTAAGTCAACCCATGAAATGAGCGTGCGAGCGCTCAG
34181976 CCGATCGAAG
Statistics
Matches: 848, Mismatches: 154, Indels: 44
0.81 0.15 0.04
Matches are distributed among these distances:
365 227 0.27
366 73 0.09
367 79 0.09
368 366 0.43
369 2 0.00
371 1 0.00
374 1 0.00
375 1 0.00
376 1 0.00
377 1 0.00
380 95 0.11
381 1 0.00
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (367 bp):
GCCGGTCCTGCTACCACAACCCTCGATCCGACTGGGGCTTAAACATGGAATGAACTCCGTATGCC
TAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGCCGGCGGAGAGGCAGAATGCGCAAGTCGG
GGATCGACCCGATCCCCCCTGCATGCTGCCGATCCTGCTGCCGTAACCCTCGGTCTGGTCTGATC
TTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCA
TGAAATGAGCGTGCGAGCGCTCAGTCGGCCGGAAAGGCTGGTCGAAGAGGCATAATGCGTAAGTC
GGGGATCAGCCTGATCCCCCTCTACGTGTTGTCGATCCCGCT
Found at i:34181915 original size:26 final size:26
Alignment explanation
Indices: 34181886--34181938 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
34181876 CCGATCCGAT
* *
34181886 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATAAACTCCATATG
34181912 CTTAGACATGGAATAAACTCCATATG
1 CTTAGACATGGAATAAACTCCATATG
34181938 C
1 C
34181939 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATAAACTCCATATG
Found at i:34184045 original size:26 final size:26
Alignment explanation
Indices: 34184007--34184059 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
34183997 GGCTCAAAAT
34184007 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCTGTATG
34184033 CTTAGAC-ATGGAATGAACTCTGTATG
1 CTTAGACTA-GGAATGAACTCTGTATG
34184059 C
1 C
34184060 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCTGTATG
Found at i:34184903 original size:26 final size:26
Alignment explanation
Indices: 34184874--34184926 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
34184864 CTGATCGGAT
34184874 CTTAGACAGGGAATAAAC-TCTGTATG
1 CTTAGACAGGGAATAAACGTC-GTATG
* *
34184900 CTTAGACATGGAATGAACGTCGTATG
1 CTTAGACAGGGAATAAACGTCGTATG
34184926 C
1 C
34184927 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.32, C:0.17, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACAGGGAATAAACGTCGTATG
Found at i:34185721 original size:26 final size:26
Alignment explanation
Indices: 34185692--34185741 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
34185682 CCGATCCGAT
34185692 CTTAGACTGGGAATGAACTCCGTACG
1 CTTAGACTGGGAATGAACTCCGTACG
* *
34185718 CTTAGACTGGGGATGAACTTCGTA
1 CTTAGACTGGGAATGAACTCCGTA
34185742 TGCCTAAGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTACG
Found at i:34186721 original size:26 final size:26
Alignment explanation
Indices: 34186680--34186732 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34186670 CCGGTCTGAT
*
34186680 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
34186706 CTTAGACTAGGG-ATGAACTCTGTATG
1 CTTAGACT-GGGAATGAACTCTGTATG
34186732 C
1 C
34186733 CTATGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:34187416 original size:26 final size:26
Alignment explanation
Indices: 34187386--34187437 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
34187376 GCTCAAAATA
34187386 TTAGAC-TGGGAATGAACTCCATATGC
1 TTAGACAT-GGAATGAACTCCATATGC
*
34187412 TTAGACATGGAATGAACTCCGTATGC
1 TTAGACATGGAATGAACTCCATATGC
34187438 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (26 bp):
TTAGACATGGAATGAACTCCATATGC
Found at i:34188055 original size:184 final size:184
Alignment explanation
Indices: 34187727--34188096 Score: 481
Period size: 184 Copynumber: 2.0 Consensus size: 184
34187717 TTTAGCTGGG
* * * * *
34187727 GCTTATACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCATACGGGCGCTCAG
** * *
34187792 TTGGCCGAAGAGGCAGAATGCGTAAGCCGGGGATTGGCCCGACCCCCCCTACGTGCTGTCGATCC
66 CCGGCCGAAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCGACCCCCCCTACGTGCTGCCGATCC
* * * *
34187857 TACTGTCGCAACCCTCGATCC-ACTTTGATCTTAGACTGGGAATGAACTTCGTAT
131 TACTGCCACAACCCTCGATCCGA-TCTGATCTTAGACTGGAAATGAACTTCGTAT
* * * * *
34187911 GCTTAGACATGGAATGAACTCTCTATGTCTAAGCCAACCCATAAAACGAGCATGCGTGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCATACGGGCGCTCAG
* * * * * **
34187976 CCGGCCGGAGAGGTAGAATGCGTATGCTGGGGATCGGCCCGATCCCCCCTGTGTGCTGCCGATCC
66 CCGGCCGAAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCGACCCCCCCTACGTGCTGCCGATCC
* *
34188041 TGCTGCCACAACCCTCGGTCCGATCTGATCTTAGACTGGAAATGAACTTCGTAT
131 TACTGCCACAACCCTCGATCCGATCTGATCTTAGACTGGAAATGAACTTCGTAT
34188095 GC
1 GC
34188097 CTAAGCCAAC
Statistics
Matches: 158, Mismatches: 27, Indels: 2
0.84 0.14 0.01
Matches are distributed among these distances:
184 157 0.99
185 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.26, T:0.22
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCATACGGGCGCTCAG
CCGGCCGAAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCGACCCCCCCTACGTGCTGCCGATCC
TACTGCCACAACCCTCGATCCGATCTGATCTTAGACTGGAAATGAACTTCGTAT
Found at i:34188254 original size:159 final size:158
Alignment explanation
Indices: 34187912--34188260 Score: 465
Period size: 158 Copynumber: 2.2 Consensus size: 158
34187902 ACTTCGTATG
* * * *
34187912 CTTAGACAT-GGAATGAACTCTCTATGTCTAAGCCAACCCATAAAACGAGCATGCGTGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCTGTATGCCTAAGCCAACCCATAAAACGACCATACGTGCGCTCAG
* * ** *
34187976 CCGGCCGGAGAGGTAGAATGCGTATGCTGGGGATCGGCCCGATCCCCCCTGTGTGCTGCCGATCC
65 CCGGCCAGAGAGCTAGAATGCACAAGCTGGGGATCGGCCCGATCCCCCCTGTGTGCTGCCGATCC
*
34188041 TGCTGCCACAACCCTCGGTCCGATCTGAT
130 TACTGCCACAACCCTCGGTCCGATCTGAT
* *
34188070 CTTAGACTGGAAATGAACT-TCGTATGCCTAAGCCAACCCA-AGAAACGACCATACAG-GTGCTC
1 CTTAGACTGGGAATGAACTCT-GTATGCCTAAGCCAACCCATA-AAACGACCATAC-GTGCGCTC
* * **
34188132 AGCCGGCCAGAGAGCTAGAATGCACAAGCTGGGGATCGGCCTGGTCCCCCCCTGTGTGCTGTTGA
63 AGCCGGCCAGAGAGCTAGAATGCACAAGCTGGGGATCGGCCCGAT-CCCCCCTGTGTGCTGCCGA
34188197 TCCTACTG-CAGCAACCCTCGGTCCGATCTGAT
127 TCCTACTGCCA-CAACCCTCGGTCCGATCTGAT
34188229 CTTAGACTGGGAATGAACTCTGTATGCCTAAG
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAG
34188261 TCAAATAAAG
Statistics
Matches: 167, Mismatches: 17, Indels: 13
0.85 0.09 0.07
Matches are distributed among these distances:
157 3 0.02
158 88 0.53
159 75 0.45
160 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.21
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCCATAAAACGACCATACGTGCGCTCAGC
CGGCCAGAGAGCTAGAATGCACAAGCTGGGGATCGGCCCGATCCCCCCTGTGTGCTGCCGATCCT
ACTGCCACAACCCTCGGTCCGATCTGAT
Found at i:34188272 original size:159 final size:158
Alignment explanation
Indices: 34187970--34188276 Score: 438
Period size: 159 Copynumber: 1.9 Consensus size: 158
34187960 GCATGCGTGC
* * ** *
34187970 GCTCAGCCGGCCGGAGAGGTAGAATGCGTATGCTGGGGATCGGCCCGATCCCCCCTGTGTGCTGC
1 GCTCAGCCGGCCAGAGAGCTAGAATGCACAAGCTGGGGATCGGCCCGATCCCCCCTGTGTGCTGC
*
34188035 CGATCCTGCTGCCACAACCCTCGGTCCGATCTGATCTTAGACTGGAAATGAACTTCGTATGCCTA
66 CGATCCTACTGCCACAACCCTCGGTCCGATCTGATCTTAGACTGGAAATGAACTTCGTATGCCTA
* *
34188100 AGCCAACCCAAGAAACGACCATACAGGT
131 AGCCAAACAAAGAAACGACCATACAGGT
* *
34188128 GCTCAGCCGGCCAGAGAGCTAGAATGCACAAGCTGGGGATCGGCCTGGTCCCCCCCTGTGTGCTG
1 GCTCAGCCGGCCAGAGAGCTAGAATGCACAAGCTGGGGATCGGCCCGAT-CCCCCCTGTGTGCTG
** *
34188193 TTGATCCTACTG-CAGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAAC-TCTGTATGC
65 CCGATCCTACTGCCA-CAACCCTCGGTCCGATCTGATCTTAGACTGGAAATGAACTTC-GTATGC
* *
34188256 CTAAGTCAAATAAAGAAACGA
128 CTAAGCCAAACAAAGAAACGA
34188277 GCGTGCAGGC
Statistics
Matches: 131, Mismatches: 15, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
158 46 0.35
159 85 0.65
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (158 bp):
GCTCAGCCGGCCAGAGAGCTAGAATGCACAAGCTGGGGATCGGCCCGATCCCCCCTGTGTGCTGC
CGATCCTACTGCCACAACCCTCGGTCCGATCTGATCTTAGACTGGAAATGAACTTCGTATGCCTA
AGCCAAACAAAGAAACGACCATACAGGT
Found at i:34188295 original size:159 final size:158
Alignment explanation
Indices: 34187912--34188422 Score: 423
Period size: 158 Copynumber: 3.2 Consensus size: 158
34187902 ACTTCGTATG
* * * * * *
34187912 CTTAGACATGG-AATGAACTCTC-TATGTCTAAGCCAACCCATA-AAACGAGCATGC-GTGCGCT
1 CTTAGAC-TGGAAATGAACT-TCGTATGCCTAAGCCAA-ACAAAGAAACGACCATACAG-GCACT
* * ** *
34187973 CAGCCGGCCGGAGAGGTAGAATGCGTATGCTGGGGATCGGCCCGATCCCCCCTGTGTGCTGCCGA
62 CAGCCGGCCAGAGAGCTAGAATGCACAAGCTGGGGATCGGCCCGATCCCCCCTGTGTGCTGCCGA
*
34188038 TCCTGCTGCCACAACCCTCGGTCCGATCTGAT
127 TCCTACTGCCACAACCCTCGGTCCGATCTGAT
* * **
34188070 CTTAGACTGGAAATGAACTTCGTATGCCTAAGCCAACCCAAGAAACGACCATACAGGTGCTCAGC
1 CTTAGACTGGAAATGAACTTCGTATGCCTAAGCCAAACAAAGAAACGACCATACAGGCACTCAGC
* * **
34188135 CGGCCAGAGAGCTAGAATGCACAAGCTGGGGATCGGCCTGGTCCCCCCCTGTGTGCTGTTGATCC
66 CGGCCAGAGAGCTAGAATGCACAAGCTGGGGATCGGCCCGAT-CCCCCCTGTGTGCTGCCGATCC
34188200 TACTG-CAGCAACCCTCGGTCCGATCTGAT
130 TACTGCCA-CAACCCTCGGTCCGATCTGAT
* * * * * * * *
34188229 CTTAGACTGGGAATGAAC-TCTGTATGCCTAAGTCAAATAAAGAAACGAGCGTGCAGGCATTGAG
1 CTTAGACTGGAAATGAACTTC-GTATGCCTAAGCCAAACAAAGAAACGACCATACAGGCACTCAG
** * ** ** * * * *
34188293 CCGATC-GAAGAGGC-ATAATGCGTAAGCCAGAGATCGACCCTG-TCCCCTCTGTGTGCTACCGA
65 CCGGCCAG-AGA-GCTAGAATGCACAAGCTGGGGATCGGCCC-GATCCCCCCTGTGTGCTGCCGA
* * **
34188355 TCCTGCTGCCACAACCCTTGGTCCGAT-TGGGG
127 TCCTACTGCCACAACCCTCGGTCCGATCT-GAT
** *
34188387 CTTAGACATGG-AATGAACAACCTATGCCTAAGCCAA
1 CTTAGAC-TGGAAATGAACTTCGTATGCCTAAGCCAA
34188423 CCCACGAAAC
Statistics
Matches: 290, Mismatches: 49, Indels: 28
0.79 0.13 0.08
Matches are distributed among these distances:
157 9 0.03
158 151 0.52
159 127 0.44
160 3 0.01
ACGTcount: A:0.25, C:0.29, G:0.25, T:0.21
Consensus pattern (158 bp):
CTTAGACTGGAAATGAACTTCGTATGCCTAAGCCAAACAAAGAAACGACCATACAGGCACTCAGC
CGGCCAGAGAGCTAGAATGCACAAGCTGGGGATCGGCCCGATCCCCCCTGTGTGCTGCCGATCCT
ACTGCCACAACCCTCGGTCCGATCTGAT
Found at i:34188962 original size:11 final size:11
Alignment explanation
Indices: 34188946--34188976 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
34188936 CGGTTAGGCT
*
34188946 CTCCGATGATG
1 CTCCGACGATG
34188957 CTCCGACGATG
1 CTCCGACGATG
34188968 CTCCGACGA
1 CTCCGACGA
34188977 AGGTGCCCCG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.19, C:0.35, G:0.26, T:0.19
Consensus pattern (11 bp):
CTCCGACGATG
Found at i:34190067 original size:158 final size:158
Alignment explanation
Indices: 34189773--34190146 Score: 401
Period size: 158 Copynumber: 2.4 Consensus size: 158
34189763 AACTCTGTAT
* *** * *
34189773 GCTTAGACATAGAATGAACTGTGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGGGCTCAA
* * * ** *
34189838 CCGATCGAAGAGGCAGAATGCGCAATCCGAGGATCGGCCCGGTCCCCCCTATATGCTGTTGATCT
66 CCGACCGAAAAGGCAGAATGCGCAAGCCGAGGATCGGCCCGGTCCCCCCTATATGCTGCCGATCC
** * *
34189903 TGCTGCCGCAACCCTCGGTCCGGTCT-GA
131 CACTGCCACAACCCTCGGTCCAG-CTGGA
* * * * *
34189931 TCTTAGAC-TGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGGGCTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGGGCTCA
* * * * * * *
34189995 GCCGGCCGAAAAGGCATAATGCGCAAGCCGGGGATCGGCCCTGTCCCCTCTATGTGCTGCCGATC
65 ACCGACCGAAAAGGCAGAATGCGCAAGCCGAGGATCGGCCCGGTCCCCCCTATATGCTGCCGATC
* * * *
34190060 CCACTGCCACAACCTTTGGTTCAGCTGGG
130 CCACTGCCACAACCCTCGGTCCAGCTGGA
* * *
34190089 GCTTAGACATGGAATGAACTCCCTATTCCTAAGCCAACCCATGAAACGGGCGTGCGGG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGG
34190147 CACTCAGTTG
Statistics
Matches: 174, Mismatches: 39, Indels: 6
0.79 0.18 0.03
Matches are distributed among these distances:
157 3 0.02
158 170 0.98
159 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGGGCTCAA
CCGACCGAAAAGGCAGAATGCGCAAGCCGAGGATCGGCCCGGTCCCCCCTATATGCTGCCGATCC
CACTGCCACAACCCTCGGTCCAGCTGGA
Found at i:34191387 original size:159 final size:158
Alignment explanation
Indices: 34190986--34191424 Score: 440
Period size: 158 Copynumber: 2.8 Consensus size: 158
34190976 AACTCCATAT
* *
34190986 GCTTAGACATGGAATAAACTCCGTATGCCCAAGCCAACCCACGAAACGAGCGTGCGGGGGCTCAG
1 GCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * *
34191051 CCAGTCAGAGAGGCAGAATGCACAAGCTGGGGATCGACCCGGTCCCCCCTGCGTGCTGTTGATCT
66 CCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGTGTGCTGTAGATCC
* ** * * * *
34191116 TGCTGCTGCAACTCTGGATCTGGTGTGA
131 CGCTGCCACAACCCTGCATCCGCTGTGA
* * * * * * * * *
34191144 TCTTACAC-TGGGAATGAACTCTGTAT-CATAAGTCAACACACGAAATGAGCGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATAAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * *
34191207 GCCGGTCGAAGAGGCATAATGCGCAAGCCGGGGATC-AGCCAGGTCCCCCTCTATGTGCTGTCAG
65 GCCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGA-CCCGGTCCCCC-CTGTGTGCTGT-AG
* *
34191271 -TCCCGCTGCCACAACCCTTCATCCGACTG-GG
127 ATCCCGCTGCCACAACCCTGCATCCG-CTGTGA
* * *
34191302 GCTTAGACATGGAATCAACTCCCTATGCCTAAGCCAACCCACGAAACG-GACGTGCGGGTGCTCA
1 GCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACGAAACGAG-CGTGCGGGCGCTCA
* * * *
34191366 GCTGGCCGGAGAGGCAGAATGCGCAAGTCAGGGATCGACCCGGTCCCCCCTGTGTGCTG
65 GCCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGTGTGCTG
34191425 CCTATCTTGC
Statistics
Matches: 222, Mismatches: 50, Indels: 18
0.77 0.17 0.06
Matches are distributed among these distances:
156 1 0.00
157 71 0.32
158 76 0.34
159 73 0.33
160 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.29, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGTGTGCTGTAGATCC
CGCTGCCACAACCCTGCATCCGCTGTGA
Found at i:34192010 original size:26 final size:26
Alignment explanation
Indices: 34191974--34192026 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34191964 CTGGTCTGAT
34191974 CTTAGACTGGGAATGAACCCCGTATG
1 CTTAGACTGGGAATGAACCCCGTATG
* *
34192000 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACCCCGTATG
34192026 C
1 C
34192027 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACCCCGTATG
Found at i:34192734 original size:26 final size:26
Alignment explanation
Indices: 34192696--34192748 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34192686 GTCTCAAAAT
*
34192696 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAAAGAACTCTGTATG
34192722 CTTAGACAT-GGAAAGAACTCTGTATG
1 CTTAGAC-TGGGAAAGAACTCTGTATG
34192748 C
1 C
34192749 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCTGTATG
Found at i:34193711 original size:26 final size:26
Alignment explanation
Indices: 34193675--34193727 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
34193665 TCGGTCTGAT
34193675 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
34193701 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
34193727 C
1 C
34193728 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34200140 original size:26 final size:26
Alignment explanation
Indices: 34200092--34200141 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
34200082 ATTCGATCTA
*
34200092 AGACTGGGAATGAACTCCTTATGCTT
1 AGACTGGGAATGAACTCCGTATGCTT
* *
34200118 AGACTGGGGATGAACTTCGTATGC
1 AGACTGGGAATGAACTCCGTATGC
34200142 CTAAGTCAAC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.28
Consensus pattern (26 bp):
AGACTGGGAATGAACTCCGTATGCTT
Found at i:34200848 original size:26 final size:26
Alignment explanation
Indices: 34200810--34200862 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34200800 GGCTCAAAAT
34200810 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
34200836 CTTAGACAT-GGAATGAACTCCTTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
34200862 C
1 C
34200863 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34201521 original size:355 final size:355
Alignment explanation
Indices: 34201003--34201753 Score: 860
Period size: 355 Copynumber: 2.1 Consensus size: 355
34200993 TCCTACACTG
* * * ** * * * * ** * * *
34201003 GGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGGGTACGGGCGCTGAGCCAACCGAAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCACTCAACCGGCTGGAT
* * * *** *
34201068 AGGCATAATGCGCAAGCTGAGGATCGACCTGATCCCCCTCTGAATGCTGTTGATCCCGCTGCCGA
66 AGGCATAATGCGCAAGCCGAGGATCAACCCGATCCCCCTCTGAATGCTACCGATCCCGCTACCGA
** * * *
34201133 TCCCATTACCACAACCCTCGGTCCGGTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAATC
131 TCCCATTACCACAACCCTCGGTCCGACTGGGGCTTAAACATGGAATGAACTCCATATGCCTAAGC
* * * ** * *
34201198 CAACCCACGAAATGGGTGTGCGGGTGCTCAGCCAATTGGAGAGGCAGAATGCACAAGCCGGGGAT
196 CAACCCACAAAATGAGCGTGCGGGTGCTCAGCCAACCGAAGAGGCAGAATGCACAAGCCGAGGAT
* * * * * *
34201263 CGGCCCGATCCCCCCTGCTTAATACC-AGTCCTGCTGTCGCAACCCTCGATCCAGTCTGATCTTA
261 CGACCCGATCCCCCCTACGTAATACCGA-TCCTACTGCCGCAACCCTCAATCCAGTCTGATCTTA
34201327 GACTGGGAATGAACTT-CGTATGCTTAGAC-T
325 GACTGGGAATGAA-TTCCGTATGCTTAGACAT
* * * * * *
34201357 GGGGATGAACTCTGTGTGCCTAAGTCAATCCATGAAACGAGCATGCGGGCACTCAACCGGCTGGA
1 -GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCACTCAACCGGCTGGA
* * *
34201422 TAGGCATAATGCGTAAGCCGAGGATCAACCCGGTCCCCCTCTGCATGCTACCGATCCCGCTACCG
65 TAGGCATAATGCGCAAGCCGAGGATCAACCCGATCCCCCTCTGAATGCTACCGATCCCGCTACCG
* * * *
34201487 GTCCTATTGCCACAACCCTCGGTCTGACTGGGGCTTAAACATGGAATGAACTCCATATGCCTAAG
130 ATCCCATTACCACAACCCTCGGTCCGACTGGGGCTTAAACATGGAATGAACTCCATATGCCTAAG
* **
34201552 CCAACCCACAAAATGAGCGTGCGGGTGCTCAGCCGACCGAAGAGGCAGAATGTGCAAGCCGAGGA
195 CCAACCCACAAAATGAGCGTGCGGGTGCTCAGCCAACCGAAGAGGCAGAATGCACAAGCCGAGGA
* * ** ** ** *
34201617 TCGACCCGATCCCTCTTACGTGCTGTCGATCCTACTGCCGCAACCCTCAATCTGGTTTGATCTTA
260 TCGACCCGATCCCCCCTACGTAATACCGATCCTACTGCCGCAACCCTCAATCCAGTCTGATCTTA
* *
34201682 GATTGGGAGTGAATTCCGTATGCTTAGACAT
325 GACTGGGAATGAATTCCGTATGCTTAGACAT
34201713 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGC
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGC
34201754 GTACGGGTGC
Statistics
Matches: 325, Mismatches: 68, Indels: 6
0.81 0.17 0.02
Matches are distributed among these distances:
354 2 0.01
355 321 0.99
356 2 0.01
ACGTcount: A:0.25, C:0.29, G:0.25, T:0.21
Consensus pattern (355 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCACTCAACCGGCTGGAT
AGGCATAATGCGCAAGCCGAGGATCAACCCGATCCCCCTCTGAATGCTACCGATCCCGCTACCGA
TCCCATTACCACAACCCTCGGTCCGACTGGGGCTTAAACATGGAATGAACTCCATATGCCTAAGC
CAACCCACAAAATGAGCGTGCGGGTGCTCAGCCAACCGAAGAGGCAGAATGCACAAGCCGAGGAT
CGACCCGATCCCCCCTACGTAATACCGATCCTACTGCCGCAACCCTCAATCCAGTCTGATCTTAG
ACTGGGAATGAATTCCGTATGCTTAGACAT
Found at i:34201813 original size:355 final size:352
Alignment explanation
Indices: 34200999--34201841 Score: 849
Period size: 355 Copynumber: 2.4 Consensus size: 352
34200989 CTGATCCTAC
* * * *
34200999 ACTGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGGGTACGGGCGCTGAGCCAACC
1 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGG-GCTCAGTCAACC
** * * * ***
34201064 GAAGAGGCAT--AATGCGCAAGCTGAGGATCGACCTGATCCCCCTCTGAATGCTGTTGATCCCGC
65 G--GAGG-ATAGAATATGCAAGCCGAGGATCGACC-GGTCCCCCTCTGCATGCTACCGATCCCGC
* ** * *
34201127 TGCCGATCCCATTACCACAACCCTCGGTCCGGTTGGGGCTTAGACATGGAATGAACTCCCTATGC
126 TACCGATCCCATTACCACAACCCTCGGTCCGACTGGGGCTTAAACATGGAATGAACTCCATATGC
* * * * ** *
34201192 CTAATCCAACCCACGAAATGGGTGTGCGGGTGCTCAGCCAATTGGAGAGGCAGAATGCACAAGCC
191 CTAAGCCAACCCACAAAATGAGCGTGCGGGTGCTCAGCCAACCGAAGAGGCAGAATGCACAAGCC
* * * * * * *
34201257 GGGGATCGGCCCGATCCCCCCTGCTTAATACCAGTCCTGCTGTCGCAACCCTCGATCCAGTCTGA
256 GAGGATCGACCCGATCCCCCCTACGTAATACCAGTCCTACTGCCGCAACCCTCAATCCAGTCTGA
34201322 TCTTAGACTGGGAATGAACTTCGTATGCTTAG
321 TCTTAGACTGGGAATGAACTTCGTATGCTTAG
* * * * * * *
34201354 ACTGGGGATGAACTCTGTGTGCCTAAGTCAATCCATGAAACGAGCATGC-GGG--CACTCAACCG
1 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGGCTCAGTCAACCG
* * *
34201416 GCTGGATAGGCATAATGCGTAAGCCGAGGATCAACCCGGTCCCCCTCTGCATGCTACCGATCCCG
66 G-AGGATA-GAAT-ATGC--AAGCCGAGGATCGA-CCGGTCCCCCTCTGCATGCTACCGATCCCG
* * * *
34201481 CTACCGGTCCTATTGCCACAACCCTCGGTCTGACTGGGGCTTAAACATGGAATGAACTCCATATG
125 CTACCGATCCCATTACCACAACCCTCGGTCCGACTGGGGCTTAAACATGGAATGAACTCCATATG
* **
34201546 CCTAAGCCAACCCACAAAATGAGCGTGCGGGTGCTCAGCCGACCGAAGAGGCAGAATGTGCAAGC
190 CCTAAGCCAACCCACAAAATGAGCGTGCGGGTGCTCAGCCAACCGAAGAGGCAGAATGCACAAGC
* * ** ** ** *
34201611 CGAGGATCGACCCGATCCCTCTTACGTGCTGTC-GATCCTACTGCCGCAACCCTCAATCTGGTTT
255 CGAGGATCGACCCGATCCCCCCTACGTAATACCAG-TCCTACTGCCGCAACCCTCAATCCAGTCT
* *
34201675 GATCTTAGATTGGGAGTGAA-TTCCGTATGCTTAG
319 GATCTTAGACTGGGAATGAACTT-CGTATGCTTAG
* * *
34201709 ACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCAGTCGAC
1 AC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGG-GCTCAGTCAAC
* * * * * *
34201773 CGGAGCGATAGAATTTGCAAGCCGGGGATCGATGCGGT-CCCCTCCTACATGCTAGCGATCCTGC
64 CGGAG-GATAGAATATGCAAGCCGAGGATCGA-CCGGTCCCCCT-CTGCATGCTACCGATCCCGC
34201837 TACCG
126 TACCG
34201842 CAACCTTCGA
Statistics
Matches: 392, Mismatches: 79, Indels: 34
0.78 0.16 0.07
Matches are distributed among these distances:
349 3 0.01
350 2 0.01
351 7 0.02
352 2 0.01
353 3 0.01
354 10 0.03
355 339 0.86
356 5 0.01
357 4 0.01
358 4 0.01
359 13 0.03
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (352 bp):
ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGGCTCAGTCAACCG
GAGGATAGAATATGCAAGCCGAGGATCGACCGGTCCCCCTCTGCATGCTACCGATCCCGCTACCG
ATCCCATTACCACAACCCTCGGTCCGACTGGGGCTTAAACATGGAATGAACTCCATATGCCTAAG
CCAACCCACAAAATGAGCGTGCGGGTGCTCAGCCAACCGAAGAGGCAGAATGCACAAGCCGAGGA
TCGACCCGATCCCCCCTACGTAATACCAGTCCTACTGCCGCAACCCTCAATCCAGTCTGATCTTA
GACTGGGAATGAACTTCGTATGCTTAG
Found at i:34201911 original size:185 final size:184
Alignment explanation
Indices: 34201519--34202018 Score: 554
Period size: 185 Copynumber: 2.7 Consensus size: 184
34201509 TCTGACTGGG
* * * * *
34201519 GCTTAAACATGGAATGAACTCCATATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCAG
* * *
34201584 CCGACCGAAGAGGCAGAATGTGCAAGCCGAGGATCGACCCGATCCCTCTTACGTGCTGTCGATCC
66 CCGACCGAAGAGACAGAATGTGCAAGCCGAGGATCGACCCGATCCCTCCTACATGCTGTCGATCC
* * * *** * * * *
34201649 TACTGCCGCAACCCTCAATCTGGTTTGATCTTAGATTGGGAGTGAATTCCGTAT
131 TACTACCGCAACCCTCAATCCGATCCAATCTGAGACTGGGAATGAACTCCGTAT
34201703 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCAG
* * * * * * ** *
34201768 TCGACCGGAGCGATAGAATTTGCAAGCCGGGGATCGATGCGGTCCCCTCCTACATGCTAG-CGAT
66 CCGACCGAAGAGACAGAATGTGCAAGCCGAGGATCGACCCGAT-CCCTCCTACATGCT-GTCGAT
* * *
34201832 CCTGCTACCGCAACCTTCGATCCGATCCAATCTGAGACTGGGAATGAACTCCGTAT
129 CCTACTACCGCAACCCTCAATCCGATCCAATCTGAGACTGGGAATGAACTCCGTAT
* * * * *
34201888 GCTTAGACATGGAATGAACTCCGTATGCCAAAGCCAACCCACGAAACGAGCGTATGGGCGTTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCAG
* * * * * * * * * *
34201953 CCGATCGGAGAGGCAGAATGCGTAAGCCGAGGATTGGCCCGGTCTCC-CCTGCGTGCTGTCGATC
66 CCGACCGAAGAGACAGAATGTGCAAGCCGAGGATCGACCCGATC-CCTCCTACATGCTGTCGATC
34202017 CT
130 CT
34202019 GTTGTCGCAA
Statistics
Matches: 262, Mismatches: 50, Indels: 8
0.82 0.16 0.03
Matches are distributed among these distances:
183 1 0.00
184 109 0.42
185 151 0.58
186 1 0.00
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.20
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCAG
CCGACCGAAGAGACAGAATGTGCAAGCCGAGGATCGACCCGATCCCTCCTACATGCTGTCGATCC
TACTACCGCAACCCTCAATCCGATCCAATCTGAGACTGGGAATGAACTCCGTAT
Found at i:34203121 original size:26 final size:26
Alignment explanation
Indices: 34203083--34203135 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34203073 GGCTCAAAAT
34203083 CTTAGACTGGGAATGAACTCCCTATG
1 CTTAGACTGGGAATGAACTCCCTATG
*
34203109 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCCTATG
34203135 C
1 C
34203136 CTAAGCTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCCTATG
Found at i:34203634 original size:26 final size:26
Alignment explanation
Indices: 34203583--34203635 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
34203573 CCTATTCGAT
*
34203583 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCATATG
* *
34203609 CTTAGACTGGGGATGAACTTTATATG
1 CTTAGACTGGGAATGAACTTCATATG
34203635 C
1 C
34203636 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCATATG
Found at i:34203986 original size:159 final size:159
Alignment explanation
Indices: 34203697--34203990 Score: 457
Period size: 159 Copynumber: 1.8 Consensus size: 159
34203687 CGACCAGAGT
* * * * *
34203697 GGCATAATGCACAAGCTGGGGACCAGCCTAGTCCCTCTCTGCATGCTGCCGATCCTGCTGCCACA
1 GGCATAATGCACAAGCTGGGGACCAGCCTAGTCCCCCTCCGCATGCTGCAGACCCCGCTGCCACA
* *
34203762 ACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAACCATGAAAT
66 ACCCTCGGTCCGACAGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAACCATGAAAT
34203827 GAGCGAGTAGGTGCTGAGCCGGCTGGAGA
131 GAGCGAGTAGGTGCTGAGCCGGCTGGAGA
*
34203856 GGCATAATGCACAAG-TCGGGGATCAGCCTAGTCCCCCTCCGCATGCTGCTAG-CCCCGCTGCCA
1 GGCATAATGCACAAGCT-GGGGACCAGCCTAGTCCCCCTCCGCATGCTGC-AGACCCCGCTGCCA
* * *
34203919 CAACCCTCGGTCTGACAGGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAA
64 CAACCCTCGGTCCGACAGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAACCATGAA
34203984 ATGAGCG
129 ATGAGCG
34203991 TGCAGGCGCT
Statistics
Matches: 122, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
158 1 0.01
159 120 0.98
160 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (159 bp):
GGCATAATGCACAAGCTGGGGACCAGCCTAGTCCCCCTCCGCATGCTGCAGACCCCGCTGCCACA
ACCCTCGGTCCGACAGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAACCATGAAAT
GAGCGAGTAGGTGCTGAGCCGGCTGGAGA
Found at i:34204015 original size:159 final size:159
Alignment explanation
Indices: 34203689--34204052 Score: 453
Period size: 159 Copynumber: 2.3 Consensus size: 159
34203679 GGAGAGGCCG
* * * * * * *
34203689 ACCAGAGTGGCATAATGCACAAGCTGGGGACCAGCCTAGTCCCTCTCTGCATGCTGCCGATCCTG
1 ACCAGAGAGGCATAATGCACAAGCTGGGGATCAGCCTAGTCCCCCTCCGCATGCTGCAGACCCCG
* *
34203754 CTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAAC
66 CTGCCACAACCCTCGGTCCGACAGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAAC
* * * *
34203819 CATGAAATGAGCGAGTAGGTGCTGAGCCG
131 CATGAAATGAGCGAGCAGGCGCTCAGCCA
* **
34203848 GCTGGAGAGGCATAATGCACAAG-TCGGGGATCAGCCTAGTCCCCCTCCGCATGCTGCTAG-CCC
1 ACCAGAGAGGCATAATGCACAAGCT-GGGGATCAGCCTAGTCCCCCTCCGCATGCTGC-AGACCC
* *
34203911 CGCTGCCACAACCCTCGGTCTGACAGGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAA
64 CGCTGCCACAACCCTCGGTCCGACAGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
* * *
34203976 CCCATGAAATGAGCGTGCAGGCGCTCAGTCA
129 ACCATGAAATGAGCGAGCAGGCGCTCAGCCA
* * ** **
34204007 ACCAGAGAGGTAGAATGCGTAAGCTGGGGATCAGCCCGGTCCCCCT
1 ACCAGAGAGGCATAATGCACAAGCTGGGGATCAGCCTAGTCCCCCT
34204053 TGTGTGCTAC
Statistics
Matches: 172, Mismatches: 30, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
158 1 0.01
159 169 0.98
160 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.18
Consensus pattern (159 bp):
ACCAGAGAGGCATAATGCACAAGCTGGGGATCAGCCTAGTCCCCCTCCGCATGCTGCAGACCCCG
CTGCCACAACCCTCGGTCCGACAGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAAC
CATGAAATGAGCGAGCAGGCGCTCAGCCA
Found at i:34204134 original size:26 final size:26
Alignment explanation
Indices: 34204098--34204150 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
34204088 CCGATCCGAT
* *
34204098 CTTAGACTGGGAATGAACTCTATATG
1 CTTACACTGGGAATGAACTCCATATG
*
34204124 CTTACACTGGGGATGAACTCCATATG
1 CTTACACTGGGAATGAACTCCATATG
34204150 C
1 C
34204151 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCATATG
Found at i:34205111 original size:159 final size:158
Alignment explanation
Indices: 34204774--34205158 Score: 402
Period size: 159 Copynumber: 2.4 Consensus size: 158
34204764 TACTTAGATA
* * * * *
34204774 AGGAATGAACTCTGTATGCCTATGCCAACCCACGAAACGAGCGTGCGGGCACTCAGTCGATCGAA
1 AGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGAA
* * * * * * *
34204839 GAGGCAGAATGCGCAAGTCAGGGATTGACCTGGTCTCCCCTGCGTGCTATCGATCCTACTGCCGC
66 GAGACAGAATGCACAAGCCAGGGATAGACCCGGTCTCCCCTGCGTGCTATCGATCCCACTGCCAC
* * *
34204904 AACCCTCGGTCTGATTCGATCTTACACT
131 AACCCTCAGTCCGATGCGATCTTACACT
* * *
34204932 AGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAGCC-AGCCGA
1 AGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGA-CCGA
* * * * * *
34204996 AGAGACATAATGCACAAGCCGGGGATCAG-CCCGGTCCTCCTCTGCGTGTTGTCGATCCCGCTGC
65 AGAGACAGAATGCACAAGCCAGGGAT-AGACCCGGT-CTCCCCTGCGTGCTATCGATCCCACTGC
* * *
34205060 CACAACCCTCAGTCCGACTGGGGT-TTAGAC-
128 CACAACCCTCAGTCCGA-TGCGATCTTACACT
* * **
34205090 ATGGAATGAACTCCCTATGCCTAAGCCAATCCATTAAACG-GACGTGCGGGCGCTCAGCCGACCG
1 A-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAG-CGTGCGGGCGCTCAGCCGACCG
34205154 AAGAG
64 AAGAG
34205159 GTAACTTCCT
Statistics
Matches: 186, Mismatches: 34, Indels: 13
0.80 0.15 0.06
Matches are distributed among these distances:
157 1 0.01
158 82 0.44
159 99 0.53
160 4 0.02
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.19
Consensus pattern (158 bp):
AGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGAA
GAGACAGAATGCACAAGCCAGGGATAGACCCGGTCTCCCCTGCGTGCTATCGATCCCACTGCCAC
AACCCTCAGTCCGATGCGATCTTACACT
Found at i:34205871 original size:183 final size:182
Alignment explanation
Indices: 34205513--34205879 Score: 436
Period size: 183 Copynumber: 2.0 Consensus size: 182
34205503 TCTAGCTGGG
* * *
34205513 GCTTAGATATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTGAG
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * *
34205578 CCGACCGTAGAGGCAGAATGCGTAACTCAGGATCAGCCTGATCCCCCTTGCGTGCTGCGATCCTG
66 CCGACCGGAGAGGCAGAATGCGTAACTCAGGATCAGCCTGATCCCCCCTGCGTGCTGCGATCCTA
* * * *
34205643 CTGCTGCAACCCTCGGTCCGGTCCGATCTTAGACTAAAAAATGAACTCCGTAT
131 CAGCTACAACCCTCAGTCCGCTCCGATCTTAGACTAAAAAATGAACT-CGTAT
* ** * *
34205696 GCTTAGACATGGAATGAACTCTGTGTGCCTAAGCCAACCCACGAAACGAGTTTTCGGGCGTTCAG
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * *
34205761 CC-AGCCGGAGAGGTAGAATGCGTAAGTCGGGATC-GGCTCGATCCCCCCTGCGTGCTGTGGATC
66 CCGA-CCGGAGAGGCAGAATGCGTAACTCAGGATCAGCCT-GATCCCCCCTGCGTGCTG-CGATC
* * ***
34205824 CTACAG-TCACAACCCTCAGTCTGCTCTGATCTTAGACT-GGGAATGAACTCGTAT
128 CTACAGCT-ACAACCCTCAGTCCGCTCCGATCTTAGACTAAAAAATGAACTCGTAT
34205878 GC
1 GC
34205880 CTAAGTCAAC
Statistics
Matches: 155, Mismatches: 25, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
182 11 0.07
183 111 0.72
184 33 0.21
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.22
Consensus pattern (182 bp):
GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGACCGGAGAGGCAGAATGCGTAACTCAGGATCAGCCTGATCCCCCCTGCGTGCTGCGATCCTA
CAGCTACAACCCTCAGTCCGCTCCGATCTTAGACTAAAAAATGAACTCGTAT
Found at i:34206187 original size:157 final size:155
Alignment explanation
Indices: 34205697--34206195 Score: 396
Period size: 157 Copynumber: 3.2 Consensus size: 155
34205687 ACTCCGTATG
* * * * *
34205697 CTTAGACATGGAATGAACTCTGTGTGCCTAAGCCAACCCACGAAACGAGTTTTCGGGCGTTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTACGGGCGCTCAG-
* * * * * * * *
34205762 CAGCCGGAGAGGTAGAATGCGTAAGTC-GGGATCGGCTCGATCCCCCCTGCGTGCTGTGGATCCT
65 CAGTC-GAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCTCTGCGTGCTGTCGATCCT
* * *
34205826 ACAGTCACAACCCTC-AGTCTGCTCTGAT
129 GCTGTCACAACCCTCGA-TCCG-TCTGAT
* * * * **
34205854 CTTAGAC-TGGGAATGAACT-CGTATGCCTAAGTCAACCCAAGAAACGAGTGTACAGGCACTGGG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTACGGGCGCTCAG
* * ** * * * * * ** *
34205917 CCGATCGAAGAGTCTTAATGCACAAGCTGGGGATCGACCTGGACCCCCTCTATGTGCTGTCGGTC
65 CAG-TCG-AGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGG-TCCCCTCTGCGTGCTGTCGATC
* * * * * * **
34205982 CCGCTGCCAAAACCCTCGGTTCGGCTGGG
127 CTGCTGTCACAACCCTCGATCCGTCTGAT
* * * * *
34206011 GTTCAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAG
1 CTT-AGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTACGGGCGCTCAG
* *
34206076 CTAGTCGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCTTTGCGTGCTGCCGATCCT
65 C-AGTCGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCTCTGCGTGCTGTCGATCCT
*
34206141 GCTGTCGCAACCCTCGATCCGATCTGAT
129 GCTGTCACAACCCTCGATCCG-TCTGAT
*
34206169 CTTAGAC-TGGGAATGAACTCCTTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
34206196 TTAGACTGGG
Statistics
Matches: 252, Mismatches: 78, Indels: 24
0.71 0.22 0.07
Matches are distributed among these distances:
155 3 0.01
156 48 0.19
157 85 0.34
158 76 0.30
159 39 0.15
160 1 0.00
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.21
Consensus pattern (155 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTACGGGCGCTCAGC
AGTCGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCTCTGCGTGCTGTCGATCCTGC
TGTCACAACCCTCGATCCGTCTGAT
Found at i:34206205 original size:26 final size:26
Alignment explanation
Indices: 34206169--34206224 Score: 96
Period size: 26 Copynumber: 2.2 Consensus size: 26
34206159 CCGATCTGAT
34206169 CTTAGACTGGGAATGAACTCCT-TATG
1 CTTAGACTGGGAATGAACT-CTGTATG
34206195 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
34206221 CTTA
1 CTTA
34206225 AGTCAACACA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
25 2 0.07
26 27 0.93
ACGTcount: A:0.27, C:0.18, G:0.23, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:34207197 original size:26 final size:26
Alignment explanation
Indices: 34207168--34207223 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
34207158 TCGGTCCGAT
34207168 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
* *
34207194 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
34207220 CTTA
1 CTTA
34207224 AGTCAACCCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:34207538 original size:26 final size:26
Alignment explanation
Indices: 34207509--34207561 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
34207499 TCGGTCTGAT
34207509 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
34207535 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
34207561 C
1 C
34207562 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:34207612 original size:341 final size:340
Alignment explanation
Indices: 34206852--34207613 Score: 888
Period size: 341 Copynumber: 2.2 Consensus size: 340
34206842 CCGGTTCGAT
* * * * *
34206852 CTTAGACTGGGAATGAACTC-GTATGCCATAAGTCCCACTCACGAAACGAGCGTGCGGGTGCTGA
1 CTTAGACTGGGAATGAACTCTGTATGCC-TAAGT-CAACCCACGAAACGAGCGTGCGAGCGCTCA
* * * ** * * ** * * * *
34206916 GCTATCCAAAGAGGCATAATGCACAAGCCGGGGATCAGTTCGATCCCCCTCTGCGTGCTG-TCAG
64 GCCAACCAGAGAGGCATAATGTGCAAGTCAGGGATCAGCCCGGT-CCTCTCTGTGTGCTGCT-GG
* * * * *
34206980 TCCCGCTGCCACAACCCTCGGTTCGGCTGGGGCTCAGACGTGGAATGAACTCCTATGCCTAAGCC
127 TCCCGCTACCACAACCCTCGGTCCGGCTGAGACTCAGACATGGAATGAACTCCTATGCCTAAGCC
* * * ** * *
34207045 AACCCACGAAATGGACGAGCGGGCGCTCAGTCGGTCGAAGAGGTAGAATGCGCAAGCCGGGGATC
192 AACCCACGAAAAGGACGAGCAGGCCCTCAGTCGACCGAAGAGGCAGAATGAGCAAGCCGGGGATC
* * * * * * *
34207110 AGCTCGATCCCCCCTGCGTGCTGTCGATCCTACTGCTGTACCCCTGATTCGGTCCGATCTTAGAC
257 AGCTCGATCCCCCCTGCGTACTATCAATCCTACTACCGCAACCCTGATTCGGTCCGATCTTAGAC
34207175 TGGGAATAAACTCCGTATG
322 TGGGAATAAACTCCGTATG
* * *
34207194 CTTAGACTGGGAATGAACTCTGTATGCTTAAGTCAACCCACGAAATGAGCGTGCGAGCGCTGAGC
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGCGCTCAGC
* **
34207259 CGACTGGAGAGGCATAATGTGCAAGTCAGGGATCAGCCCGGTCCTCTCTGTGTGCTGCTGGTCCC
66 CAACCAGAGAGGCATAATGTGCAAGTCAGGGATCAGCCCGGTCCTCTCTGTGTGCTGCTGGTCCC
* *
34207324 GCTACCACAACCCTCGGTCCGGCTGAGACTTAGACATGGAATGATCTCCCTATGCCTAAGCCAAC
131 GCTACCACAACCCTCGGTCCGGCTGAGACTCAGACATGGAATGAACT-CCTATGCCTAAGCCAAC
* *
34207389 CCACGAAACAGG-CGTGCAGGCCCTCAG-CTGACCGGAGAGGCAGAATGAGCAAGCCGGGGATC-
195 CCACGAAA-AGGACGAGCAGGCCCTCAGTC-GACCGAAGAGGCAGAATGAGCAAGCCGGGGATCA
* * *
34207451 GGTCTGATCCCCCCTGCGTACTATCAATCCTGCTACCGCAACCCTCG-TTCGGTCTGATCTTAGA
258 GCTC-GATCCCCCCTGCGTACTATCAATCCTACTACCGCAACCCT-GATTCGGTCCGATCTTAGA
* *
34207515 CTGGGAATGAACTCTGTATG
321 CTGGGAATAAACTCCGTATG
* * * * *
34207535 CTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGTGTGCGGGCGTTCAGC
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGCGCTCAGC
34207600 CAACCAGAGAGGCA
66 CAACCAGAGAGGCA
34207614 GGATGCNNNN
Statistics
Matches: 352, Mismatches: 61, Indels: 15
0.82 0.14 0.04
Matches are distributed among these distances:
340 62 0.18
341 256 0.73
342 28 0.08
343 6 0.02
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (340 bp):
CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGCGCTCAGC
CAACCAGAGAGGCATAATGTGCAAGTCAGGGATCAGCCCGGTCCTCTCTGTGTGCTGCTGGTCCC
GCTACCACAACCCTCGGTCCGGCTGAGACTCAGACATGGAATGAACTCCTATGCCTAAGCCAACC
CACGAAAAGGACGAGCAGGCCCTCAGTCGACCGAAGAGGCAGAATGAGCAAGCCGGGGATCAGCT
CGATCCCCCCTGCGTACTATCAATCCTACTACCGCAACCCTGATTCGGTCCGATCTTAGACTGGG
AATAAACTCCGTATG
Found at i:34210759 original size:159 final size:159
Alignment explanation
Indices: 34210482--34210775 Score: 430
Period size: 159 Copynumber: 1.8 Consensus size: 159
34210472 CGACCAGAGT
* * * *
34210482 GGCATAATGCACAAGCTGGGGATCAGCCTAGTCCCTCTCTGTATGCTGCCGATCCTGCTGCCACA
1 GGCATAATGCACAAGCTGGGGATCAGCCTAGTCCCCCTCCGCATGCTGCAGATCCTGCTGCCACA
* * *** * *
34210547 ACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAAACCATGAAAT
66 ACCCTCAGTACGAAAGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAACCATGAAAT
34210612 GAGCGAGTAGGTGCTGAGCCGACTGGAGA
131 GAGCGAGTAGGTGCTGAGCCGACTGGAGA
*
34210641 GGCATAATGCACAAG-TCGGGGATCAGCCTAGTCCCCCTCCGCGTGCTGCTAG-TCCTGCTGCCA
1 GGCATAATGCACAAGCT-GGGGATCAGCCTAGTCCCCCTCCGCATGCTGC-AGATCCTGCTGCCA
* *
34210704 CAACCCTCAGTATGAAAGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAA
64 CAACCCTCAGTACGAAAGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAACCATGAA
34210769 ATGAGCG
129 ATGAGCG
34210776 TGCAGGCGCT
Statistics
Matches: 119, Mismatches: 14, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
158 1 0.01
159 117 0.98
160 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.20
Consensus pattern (159 bp):
GGCATAATGCACAAGCTGGGGATCAGCCTAGTCCCCCTCCGCATGCTGCAGATCCTGCTGCCACA
ACCCTCAGTACGAAAGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAACCATGAAAT
GAGCGAGTAGGTGCTGAGCCGACTGGAGA
Found at i:34210800 original size:159 final size:159
Alignment explanation
Indices: 34210473--34210827 Score: 419
Period size: 159 Copynumber: 2.2 Consensus size: 159
34210463 CGGAGAGGCC
* * * * *
34210473 GACCAGAGTGGCATAATGCACAAG-CTGGGGATCAGCCTAGTCCCTCTCTGTATGCTGCCGATCC
1 GACCAGAGAGGCATAATGCACAAGTC-GGGGATCAGCCTAGTCCCCCTCCGCATGCTGCAGATCC
* * *** * *
34210537 TGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAA
65 TGCTGCCACAACCCTCAGTACGAAAGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
* * * *
34210602 ACCATGAAATGAGCGAGTAGGTGCTGAGCC
130 ACCATGAAATGAGCGAGCAGGCGCTCAGCA
** *
34210632 GACTGGAGAGGCATAATGCACAAGTCGGGGATCAGCCTAGTCCCCCTCCGCGTGCTGCTAG-TCC
1 GACCAGAGAGGCATAATGCACAAGTCGGGGATCAGCCTAGTCCCCCTCCGCATGCTGC-AGATCC
*
34210696 TGCTGCCACAACCCTCAGTATGAAAGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
65 TGCTGCCACAACCCTCAGTACGAAAGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
* *
34210761 CCCATGAAATGAGCGTGCAGGCGCTCAGTCA
130 ACCATGAAATGAGCGAGCAGGCGCTCAG-CA
* * ** *
34210792 G-CCAGAGAGGTAGAATGCGTAAGTTGGGGATCAGCC
1 GACCAGAGAGGCATAATGCACAAGTCGGGGATCAGCC
34210828 CGATCCCTCT
Statistics
Matches: 164, Mismatches: 29, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
159 160 0.98
160 4 0.02
ACGTcount: A:0.25, C:0.27, G:0.28, T:0.19
Consensus pattern (159 bp):
GACCAGAGAGGCATAATGCACAAGTCGGGGATCAGCCTAGTCCCCCTCCGCATGCTGCAGATCCT
GCTGCCACAACCCTCAGTACGAAAGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAA
CCATGAAATGAGCGAGCAGGCGCTCAGCA
Found at i:34210919 original size:26 final size:26
Alignment explanation
Indices: 34210883--34210935 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
34210873 CCGGTTCGAT
34210883 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCTATATG
*
34210909 CTTAGACTGGGGATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCTATATG
34210935 C
1 C
34210936 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTATATG
Found at i:34211913 original size:159 final size:159
Alignment explanation
Indices: 34211573--34211981 Score: 414
Period size: 159 Copynumber: 2.6 Consensus size: 159
34211563 ATAAACTCTG
* * * *
34211573 TATGCCTATGCCAACCCACGAAATGAGCGTGCGGGCACTCAGTCGACCGAAGAGGCAGAATGCAC
1 TATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGAAGAGGCAGAATGCAC
* * * * * * * *
34211638 AAGTCAGGGAT-TGACCTGGT-CTCCCCTGCGTGCTATCGATCCTACTGCCGCAACCCTCAGTCT
66 AAGCCAGGGATCAG-CCCGGTCCTCCTCTGCGTGCTACCGATCCCACTGCCACAACCCTCAGTCC
* * *
34211701 GGTTCGATCTTACACTGGGAATGAACTTCG
130 GGTGCGATCTTACACTGGGAATGAACTCCC
* * * * *
34211731 TATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAGCCGACCGAAGAGACATAATGCAC
1 TATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGAAGAGGCAGAATGCAC
* * * *
34211796 AAGCCAGGGATCAGCCCGGTCCTCCTCTGCGTGTTGCCGATCCCGCTGCCACAACCCTCGGTCCG
66 AAGCCAGGGATCAGCCCGGTCCTCCTCTGCGTGCTACCGATCCCACTGCCACAACCCTCAGTCCG
* * *
34211861 GCTGGGGT-TTAGACAT-GGAATGAACTCCC
131 G-TGCGATCTTACAC-TGGGAATGAACTCCC
* * * * * *
34211890 TATGCCTAAGCCAATCCATGAAACG-GACGTGCGGGTGCTCAGCCGGCCGAAGAGGTAGGATGCA
1 TATGCCTAAGCCAACCCACGAAACGAG-CGTGCGGGCGCTCAGCCGACCGAAGAGGCAGAATGCA
* * *
34211954 CAAGCCGGGGATCGGCCCGATCCCTCCT
65 CAAGCCAGGGATCAGCCCGGT-CCTCCT
34211982 GTGTGCTACT
Statistics
Matches: 204, Mismatches: 41, Indels: 10
0.80 0.16 0.04
Matches are distributed among these distances:
158 72 0.35
159 122 0.60
160 10 0.05
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.18
Consensus pattern (159 bp):
TATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGAAGAGGCAGAATGCAC
AAGCCAGGGATCAGCCCGGTCCTCCTCTGCGTGCTACCGATCCCACTGCCACAACCCTCAGTCCG
GTGCGATCTTACACTGGGAATGAACTCCC
Found at i:34212375 original size:26 final size:26
Alignment explanation
Indices: 34212346--34212396 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
34212336 TCGATCCGAT
34212346 CTTAGACTGGGAATGAA-TTTCGTATA
1 CTTAGACTGGGAATGAACTTT-GTATA
*
34212372 CTTAGACTGGGGATGAACTTTGTAT
1 CTTAGACTGGGAATGAACTTTGTAT
34212397 GCCTACGTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.27, C:0.12, G:0.25, T:0.35
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTTGTATA
Found at i:34213927 original size:26 final size:26
Alignment explanation
Indices: 34213875--34213927 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
34213865 CCAGCCTGAT
* *
34213875 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGCATG
*
34213901 CTTAGACTAGGGATGAACTCCGCATG
1 CTTAGACTAGGAATGAACTCCGCATG
34213927 C
1 C
34213928 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGCATG
Found at i:34214429 original size:26 final size:26
Alignment explanation
Indices: 34214400--34214452 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
34214390 CCGGTCCAAT
34214400 CTTAGACTGGGCATGAACTCCGTATG
1 CTTAGACTGGGCATGAACTCCGTATG
* * *
34214426 CTTAGACTGGGGATGAATTTCGTATG
1 CTTAGACTGGGCATGAACTCCGTATG
34214452 C
1 C
34214453 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGCATGAACTCCGTATG
Found at i:34214896 original size:155 final size:155
Alignment explanation
Indices: 34214593--34214873 Score: 363
Period size: 155 Copynumber: 1.8 Consensus size: 155
34214583 CAGTCCGACT
* *
34214593 GGGGCTTAAACATAGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGTGTACGGGTGCT
1 GGGGCTTAAACATAGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCT
* * * * *
34214658 GAACCGACTGGAGAGGCATAATGCACAAGCCAGGGATCGACTCGATCCCCCTCTGTGTGCTGCCA
66 CAACCGACTGGAGAAGCAGAATGCACAAGCCAGGGATCGACCCGATCCCCCTCTGCGTGCTGCCA
34214723 GTCCCATGCCACAACCCTCGATCTG
131 GTCCCATGCCACAACCCTCGATCTG
* * * * *
34214748 GGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTAC-GGTCGT
1 GGGGCTTAAACATAGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACGGGT-GC
*** *
34214812 TCAGTTGA-TCGGAGAAGCAGAATGCGCAAGCC-GAGGATCGACCCGATCCCCC-CTGCGTGCTG
65 TCAACCGACT-GGAGAAGCAGAATGCACAAGCCAG-GGATCGACCCGATCCCCCTCTGCGTGCTG
34214874 TTGATCCTAC
Statistics
Matches: 107, Mismatches: 16, Indels: 7
0.82 0.12 0.05
Matches are distributed among these distances:
154 14 0.13
155 93 0.87
ACGTcount: A:0.26, C:0.30, G:0.27, T:0.18
Consensus pattern (155 bp):
GGGGCTTAAACATAGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCT
CAACCGACTGGAGAAGCAGAATGCACAAGCCAGGGATCGACCCGATCCCCCTCTGCGTGCTGCCA
GTCCCATGCCACAACCCTCGATCTG
Found at i:34215095 original size:26 final size:26
Alignment explanation
Indices: 34215066--34215118 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
34215056 CCGGTCTGAT
34215066 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
34215092 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
34215118 C
1 C
34215119 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34215470 original size:26 final size:26
Alignment explanation
Indices: 34215434--34215486 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34215424 TTGGTTAAAT
34215434 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
* *
34215460 CTTAGACTGGGGATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
34215486 C
1 C
34215487 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:34222025 original size:26 final size:26
Alignment explanation
Indices: 34221995--34222047 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34221985 GGCTCAAAAT
*
34221995 CTTAGAC-TGAGAATGAACTTCGTATG
1 CTTAGACATG-GAATGAACTCCGTATG
34222021 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
34222047 C
1 C
34222048 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:34222739 original size:182 final size:182
Alignment explanation
Indices: 34222526--34222891 Score: 477
Period size: 182 Copynumber: 2.0 Consensus size: 182
34222516 TCTAGCTGGG
* * * *
34222526 GCTTAGATATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGTTGAG
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGTTCAG
* * *
34222591 CC-GACCGTAGAGGCAGAATGCGTAAGTCAGGATCAGCCTGATCCCCCCTGCGTGCTG-CGATCC
66 CCAG-CCGGAGAGGCAGAATGCATAAGTCAGGATCAGCCCGATCCCCCCTGCGTGCTGTCGATCC
* * *
34222654 TACTG-CTGCAACCCTCGGTCCGGTCCGATCTTAGACTGAAAATGAACTCCGTAT
130 TACAGTC-ACAACCCTCGGTCCGCTCCGATCTTAGACTGAAAATGAACT-CGTAT
* ** *
34222708 GCTTAGACATGGAATGAACTCTGTGTGCCTAAGCCAACCCACGAAACGAGTTTTCGGGCGTTCAG
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGTTCAG
* * * * *
34222773 CCAGCCGGAGAGGTAGAATGCATAAGTCGGGATCGGCCCGGTCCCCCCTGCGTGCTGTGGATCCT
66 CCAGCCGGAGAGGCAGAATGCATAAGTCAGGATCAGCCCGATCCCCCCTGCGTGCTGTCGATCCT
* * **
34222838 ACAGTCACAACCCTCGGTCTGCTCTGATCTTAGACTGGGAATGAACTCGTAT
131 ACAGTCACAACCCTCGGTCCGCTCCGATCTTAGACTGAAAATGAACTCGTAT
34222890 GC
1 GC
34222892 CTAAGTCAAC
Statistics
Matches: 158, Mismatches: 23, Indels: 6
0.84 0.12 0.03
Matches are distributed among these distances:
182 112 0.71
183 45 0.28
184 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.22
Consensus pattern (182 bp):
GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGTTCAG
CCAGCCGGAGAGGCAGAATGCATAAGTCAGGATCAGCCCGATCCCCCCTGCGTGCTGTCGATCCT
ACAGTCACAACCCTCGGTCCGCTCCGATCTTAGACTGAAAATGAACTCGTAT
Found at i:34223220 original size:26 final size:26
Alignment explanation
Indices: 34223182--34223237 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
34223172 CCGATCTGAT
34223182 CTTAGACTAGGAATGAACTCCT-TATG
1 CTTAGACTAGGAATGAACT-CTGTATG
*
34223208 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCTGTATG
34223234 CTTA
1 CTTA
34223238 AGTCAACACA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
25 2 0.07
26 26 0.93
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.32
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCTGTATG
Found at i:34223973 original size:157 final size:153
Alignment explanation
Indices: 34223686--34224206 Score: 465
Period size: 157 Copynumber: 3.3 Consensus size: 153
34223676 CCTACTGTTC
* * * *
34223686 CAACCCTCAGTCCGATTTGATTTTAGACTTGGAATGAACTCTATATGCCTAAGCCAACCCACGAA
1 CAACCCTCGGTCCGGTTCGATCTTAGAC-TGGAATGAACTC-ATATGCCTAAGCCAACCCACGAA
* * * * * ** * *
34223751 ATGAGCGTTCGGGCACTCAGCCGACTAGAGAGGCAGAACACACAAGCTGGGGATCAGCCCGGTCC
64 ATGAGCGTGCGGGCGCTCAGCTGACCAAAGAGGCAGAATGCACAAGCCGGGGATCAGCTC-GTCC
* *
34223816 CTCCTGCGTACTGTCGATCCTGGAGCTG
128 CCCCTGCGTGCTGTCGATCCT--AGCTG
* * *
34223844 CAACCCTCGGTCCGGTTCGATCTTAGACTAGGAATGAACTCGTATGCATAAGTCAACCCACGAAA
1 CAACCCTCGGTCCGGTTCGATCTTAGACT-GGAATGAACTCATATGCCTAAGCCAACCCACGAAA
* * * * *
34223909 CGAGCGTGCGGGTGCTGAGCTGACCAAAGAGGCATAATGCACAAGCCGGGGATCAGTTCAGTCCC
65 TGAGCGTGCGGGCGCTCAGCTGACCAAAGAGGCAGAATGCACAAGCCGGGGATCAGCTC-GTCCC
*
34223974 CCTCTGCGTGCTGTC-AGTCC-CGCTG
129 CC-CTGCGTGCTGTCGA-TCCTAGCTG
* * * ** * *
34223999 CCACACCCTCGGTTCGGCTGGGGCTCAGACGTGGAATGAACTCCTATGCCTAAGCCAACCCACGA
1 -CA-ACCCTCGGTCCGGTTCGATCTTAGAC-TGGAATGAACTCATATGCCTAAGCCAACCCACGA
* ** * * *
34224064 AATG-GACGAGCGGGCGCTCAG-TCGGTCGAAGAGGTAGAATGCGCAAGCCGGGGATCAGCTCGA
63 AATGAG-CGTGCGGGCGCTCAGCT-GACCAAAGAGGCAGAATGCACAAGCCGGGGATCAGCTCG-
34224127 TCCCCCCCTGCGTGCTGTCGATCCTACTGCTG
125 T-CCCCCCTGCGTGCTGTCGATCCTA--GCTG
* * * *
34224159 TAACCCCCGGTTCGGTCCGATCTTAGACTGGGAATGAACTCCATATGC
1 CAACCCTCGGTCCGGTTCGATCTTAGACT-GGAATGAACT-CATATGC
34224207 TTAGACTGGG
Statistics
Matches: 292, Mismatches: 55, Indels: 31
0.77 0.15 0.08
Matches are distributed among these distances:
155 4 0.01
156 5 0.02
157 187 0.64
158 85 0.29
159 7 0.02
160 4 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (153 bp):
CAACCCTCGGTCCGGTTCGATCTTAGACTGGAATGAACTCATATGCCTAAGCCAACCCACGAAAT
GAGCGTGCGGGCGCTCAGCTGACCAAAGAGGCAGAATGCACAAGCCGGGGATCAGCTCGTCCCCC
CTGCGTGCTGTCGATCCTAGCTG
Found at i:34224216 original size:26 final size:26
Alignment explanation
Indices: 34224180--34224236 Score: 96
Period size: 26 Copynumber: 2.2 Consensus size: 26
34224170 TCGGTCCGAT
34224180 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
**
34224206 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
34224232 CTTAG
1 CTTAG
34224237 TCAACCCATG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:34224224 original size:499 final size:495
Alignment explanation
Indices: 34222520--34224462 Score: 1526
Period size: 499 Copynumber: 3.9 Consensus size: 495
34222510 CCTCAGTCTA
* * * *
34222520 GCTGGGGCTTAGATATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGC
1 GCTGGGGCTCAGACATGGAATGAACTC-CTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGC
* * * * * * *
34222585 GTTGAGCCGACCGTAGAGGCAGAATGCGTAAGTC-AGGATCAGCCTGATCCCCCCTGCGTGCTGC
65 GCTCAGCCGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCAGCC-GATCCCCCCTGCGTGCTGC
* ** *
34222649 GATCCTACTGCT-GCAACCCTCGGTCCGGTCCGATCTTAGACTGAAAATGAACTCCGTATGCTTA
129 GATCCTACTGCTCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCATATGCTTA
* ** * *
34222713 GACAT-GGAATGAACTCTGTGTGCCTAAGCCAACCCACGAAACGAGTTTTCGGGCGTTCAGCCAG
194 GAC-TGGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTTCGAGCGCTCAGCCAG
* * * * * *
34222777 CCGGAGAGGTAGAATGCATAAGTCGGGATCGGCCCGGTCCCCCCTGCGTGCTGTGGATCCTACAG
258 CTGGAGAGGCAGAATGCATAAGTGGGGATCAGCCCGGTCCCCCCTGCGTGCTGTCGATCCTGCAG
* * *
34222842 -TCACAACCCTCGGT-CTGCTCTGATCTTAGACTGGGAATGAACTCGTATGCCTAAGTCAACCTA
323 CT-ACAACCCTCGGTCCGGCTC-GATCTTAGACTAGGAATGAACTCGTATGCCTAAGTCAACCCA
* * * * * * * * * * *
34222905 AGAAACGAGTGTACAGGCACTGGGCCGACCGAAGAGTCTTAATGCGCAAGCCGGGGATCGACCCG
386 CGAAACGAGCGTGCGGGCGCTGAGCCGACCGAAGAGGCATAATGCACAAGCCGGGGATC-AGCCA
* **
34222970 GACCCCCTCTATGTGCTGTCAGTCCCGCTGCCAAAACCCTCGGTTCG
450 GTCCCCCTCTGCGTGCTGTCAGTCCCGCTGCC-AAACCCTCGGTTCG
* * * * * *
34223017 ACTGGGGTTCAAACATGGAATGAACTCCCTATGCCTAAGCGAACCCACGAAACGGGCGTGCGGGC
1 GCTGGGGCTCAGACATGGAATGAACT-CCTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGC
* * * *
34223082 GCTCAGCCAGTCGAAGAGGCAGAA-GTTGCAAGCCGGGGAT-AGGCCCGATCCCCTCTGCGTGCT
65 GCTCAGCCGGCCGAAGAGGCAGAATG-CGCAAGCCGGGGATCA-G-CCGATCCCCCCTGCGTGCT
* * * * * * * *
34223145 ACCGATCCTGCT-ATCGCAACCCTTGATCCGATCTGATCTTAGACTAGGAATGAACTCCTTATGC
127 -GCGATCCTACTGCTCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCATATGC
* * * * *
34223209 TTAGACTGGGAATGAACTCTGTATGCTTAAGTCAACACACGAAACGAGCATGT-GAGCGCTAAGC
191 TTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGT-TCGAGCGCTCAGC
* * * * **
34223273 CAGTTGGAGAGGC-GTAATGCGTAAGTCGGGGATCAGCCCGATCCCCCTCTGTGTGCTACCGAT-
255 CAGCTGGAGAGGCAG-AATGCATAAGT-GGGGATCAGCCCGGTCCCCC-CTGCGTGCTGTCGATC
* * * *** * *
34223336 CTCGCTA-CCACAACCCTTGGTCTGGCT-GGGGTTAGAC-ATGGAATGATCTCCCTATGCCTAAG
317 CT-GC-AGCTACAACCCTCGGTCCGGCTCGATCTTAGACTA-GGAATGAACT-CGTATGCCTAAG
* * * * * * * *
34223398 CCAACCCACGAAACGGGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAAAAT-AAGCAAGTCAGGG
378 TCAACCCACGAAACGAGCGTGCGGGCGCTGAGCCGACCGAAGAGGCATAATGCA-CAAGCCGGGG
* * * ***
34223462 ATCAGCCCGATCCCCCTCTGCATGCTGTCGATCCCGGTACCACTCCTGTTGCCATAACCCT-TAA
442 ATCAGCCAG-TCCCCCTCTGCGTGCTGTC-A-----GT----C-CC-GCTGCCA-AACCCTCGGT
*
34223526 TCTA
493 TC-G
* * *
34223530 GCTGGGGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGC
1 GCTGGGGCTCAGACATGGAATGAAC-TCCTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGC
* * * * * * *
34223595 TCTCAACCGGCCGGAGAGGCAGAATGCGCAAGTCGGGGATCAACCCAGTCCCCCCTGCATGCTGC
65 GCTCAGCCGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCAGCCGA-TCCCCCCTGCGTGCTGC
* * * * * ** **
34223660 TGATCCTGCTACTGGTC-CTA--CT-GTTCC-AACC---CTCAG--TCCG-AT----TTGAT-T-
129 -GAT-C--CTACTGCTCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCATATG
* * * * *
34223708 -TTAGACTTGGAATGAACTCTATATGCCTAAGCCAACCCACGAAATGAGCGTTCGGGCACTCAGC
190 CTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTTCGAGCGCTCAGC
* ** * * *
34223772 C-GACTAGAGAGGCAGAACACACAAGCTGGGGATCAGCCCGGTCCCTCCTGCGTACTGTCGATCC
255 CAG-CTGGAGAGGCAGAATGCATAAG-TGGGGATCAGCCCGGTCCCCCCTGCGTGCTGTCGATCC
* * * *
34223836 TGGAGCTGCAACCCTCGGTCCGGTTCGATCTTAGACTAGGAATGAACTCGTATGCATAAGTCAAC
318 TGCAGCTACAACCCTCGGTCCGGCTCGATCTTAGACTAGGAATGAACTCGTATGCCTAAGTCAAC
* * *
34223901 CCACGAAACGAGCGTGCGGGTGCTGAGCTGACCAAAGAGGCATAATGCACAAGCCGGGGATCAGT
383 CCACGAAACGAGCGTGCGGGCGCTGAGCCGACCGAAGAGGCATAATGCACAAGCCGGGGATCAG-
* *
34223966 TCAGTCCCCCTCTGCGTGCTGTCAGTCCCGCTGCCACACCCTCGGTTCG
447 CCAGTCCCCCTCTGCGTGCTGTCAGTCCCGCTGCCAAACCCTCGGTTCG
* *
34224015 GCTGGGGCTCAGACGTGGAATGAACTCCTATGCCTAAGCCAACCCACGAAATG-GACGAGCGGGC
1 GCTGGGGCTCAGACATGGAATGAACTCCTATGCCTAAGCCAACCCACGAAATGAG-CGTGCGGGC
* * *
34224079 GCTCAGTCGGTCGAAGAGGTAGAATGCGCAAGCCGGGGATCAGCTCGATCCCCCCCTGCGTGCTG
65 GCTCAGCCGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCAGC-CGAT-CCCCCCTGCGTGCTG
* * * *
34224144 TCGATCCTACTGCT-GTAACCCCCGGTTCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCT
128 -CGATCCTACTGCTCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCATATGCT
* * * * * *
34224208 TAGACTGGGAATGAACTCTGTATG-CTTAGTCAACCCATGAAATGAGCGTGCGAGCGCTGAGCC-
192 TAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTTCGAGCGCTCAGCCA
* *** * * *
34224271 GACTGGAGAGGCATAATGTGCAAGTCAGGGATCAGCCCGGTCCCCCTCTGTGTGCTG-CTGGTCC
257 G-CTGGAGAGGCAGAATGCATAAGT-GGGGATCAGCCCGGTCCCCC-CTGCGTGCTGTC-GATCC
* * * * * *
34224335 CGCTA-CCACAACCCTCGGTCCGGCT-GAGACTTAGAC-ATGGAATGATCTCCCTATGCCTAAGC
318 TGC-AGCTACAACCCTCGGTCCGGCTCGA-TCTTAGACTA-GGAATGAACT-CGTATGCCTAAGT
* * * * * * * *
34224397 CAACCCACGAAAGGGGCGTGCGGGCCCTCAGCTGACCGGAGAGGCAGAATG-AGCAAGTCGGGGA
379 CAACCCACGAAACGAGCGTGCGGGCGCTGAGCCGACCGAAGAGGCATAATGCA-CAAGCCGGGGA
34224461 TC
443 TC
34224463 GGTCTGATCC
Statistics
Matches: 1116, Mismatches: 246, Indels: 165
0.73 0.16 0.11
Matches are distributed among these distances:
482 8 0.01
483 1 0.00
484 73 0.07
485 50 0.04
486 11 0.01
487 2 0.00
488 1 0.00
489 4 0.00
491 2 0.00
492 4 0.00
496 4 0.00
497 81 0.07
498 210 0.19
499 299 0.27
500 109 0.10
501 98 0.09
502 7 0.01
506 2 0.00
507 4 0.00
509 4 0.00
511 1 0.00
512 11 0.01
513 116 0.10
514 6 0.01
516 6 0.01
517 2 0.00
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.20
Consensus pattern (495 bp):
GCTGGGGCTCAGACATGGAATGAACTCCTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCG
CTCAGCCGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCAGCCGATCCCCCCTGCGTGCTGCGA
TCCTACTGCTCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGA
CTGGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTTCGAGCGCTCAGCCAGCTG
GAGAGGCAGAATGCATAAGTGGGGATCAGCCCGGTCCCCCCTGCGTGCTGTCGATCCTGCAGCTA
CAACCCTCGGTCCGGCTCGATCTTAGACTAGGAATGAACTCGTATGCCTAAGTCAACCCACGAAA
CGAGCGTGCGGGCGCTGAGCCGACCGAAGAGGCATAATGCACAAGCCGGGGATCAGCCAGTCCCC
CTCTGCGTGCTGTCAGTCCCGCTGCCAAACCCTCGGTTCG
Found at i:34224474 original size:159 final size:158
Alignment explanation
Indices: 34224206--34224548 Score: 361
Period size: 158 Copynumber: 2.2 Consensus size: 158
34224196 ACTCCATATG
** * * * * * *
34224206 CTTAGACTGGGAATGAACTCTGTATG-CTTAGTCAACCCATGAAATGAGCGTGCGAGCGCTGAGC
1 CTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAGGAGCGTGCGAGCCCTCAGC
* * * * * * *
34224270 CGACTGGAGAGGCATAATGTGCAAGTCAGGGATCAGCCCGGTCCCCCTCTGTGTGCTG-CTGGTC
66 CGACCGGAGAGGCAGAATGAGCAAGTCAGGGATCAGCCCGATCCCCC-CTGCGTACTGTC-GATC
34224334 CCGCTACCACAACCCTCGGTCCGG-CTGAGA
129 CCGCTACCACAACCCTCGGTCCGGTCTG-GA
* * *
34224364 CTTAGACAT-GGAATGATCTCCCTATGCCTAAGCCAACCCACGAAAGGGGCGTGCGGGCCCTCAG
1 CTTAGAC-TGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAGGAGCGTGCGAGCCCTCAG
* * * * * *
34224428 CTGACCGGAGAGGCAGAATGAGCAAGTCGGGGATCGGTCTGATCCCCCCTGCGTATTGTCGATCC
65 CCGACCGGAGAGGCAGAATGAGCAAGTCAGGGATCAGCCCGATCCCCCCTGCGTACTGTCGATCC
* * * *
34224493 TGCTATCGCAACCCTCGGTCCGGTCTGGT
130 CGCTACCACAACCCTCGGTCCGGTCTGGA
*
34224522 CTTAGACTGGGAATGAACTCCGTATGC
1 CTTAGACTGGGAATGAACTCCCTATGC
34224549 TTAGACTGGG
Statistics
Matches: 150, Mismatches: 30, Indels: 10
0.79 0.16 0.05
Matches are distributed among these distances:
157 1 0.01
158 76 0.51
159 73 0.49
ACGTcount: A:0.21, C:0.29, G:0.29, T:0.21
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAGGAGCGTGCGAGCCCTCAGC
CGACCGGAGAGGCAGAATGAGCAAGTCAGGGATCAGCCCGATCCCCCCTGCGTACTGTCGATCCC
GCTACCACAACCCTCGGTCCGGTCTGGA
Found at i:34224551 original size:26 final size:26
Alignment explanation
Indices: 34224522--34224574 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34224512 CCGGTCTGGT
34224522 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
34224548 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
34224574 C
1 C
34224575 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34224566 original size:342 final size:342
Alignment explanation
Indices: 34223865--34224647 Score: 968
Period size: 342 Copynumber: 2.3 Consensus size: 342
34223855 CCGGTTCGAT
* * * *
34223865 CTTAGACTAGGAATGAACTC-GTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGTGCTGAGC
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGTGCTGAGC
* * * ** **
34223929 TGACCAAAGAGGCATAATGCACAAGCCGGGGATCAGTTCAGTCCCCCTCTGCGTGCTGTCAGTCC
66 CGACTAGAGAGGCATAATGTGCAAGCCGGGGATCAGCCCAGTCCCCCTCTGCGTGCTGTCAGTCC
* * * * *
34223994 CGCTGCCACACCCTCGGTTCGGCTGGGGCTCAGACGTGGAATGAACTCCTATGCCTAAGCCAACC
131 CGCTACCACACCCTCGGTCCGGCTGAGACTCAGACATGGAATGAACTCCTATGCCTAAGCCAACC
* * ** * *
34224059 CACGAAATGGACGAGCGGGCGCTCAGTCGGTCGAAGAGGTAGAATGCGCAAGCCGGGGATCAGCT
196 CACGAAAGGGACGAGCGGGCCCTCAGTCGACCGAAGAGGCAGAATGAGCAAGCCGGGGATCAGCT
* * *
34224124 CGATCCCCCCCTGCGTGCTGTCGATCCTACTGCTGTAACCCCCGGTTCGGTCCGATCTTAGACTG
261 CGATCCCCCCCTGCGTACTGTCGATCCTACTGCTGCAACCCCCGGTCCGGTCCGATCTTAGACTG
34224189 GGAATGAACTCCATATG
326 GGAATGAACTCCATATG
* * *
34224206 CTTAGACTGGGAATGAACTCTGTATG-CTTAGTCAACCCATGAAATGAGCGTGCGAGCGCTGAGC
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGTGCTGAGC
* * * * * *
34224270 CGACTGGAGAGGCATAATGTGCAAGTCAGGGATCAGCCCGGTCCCCCTCTGTGTGCTG-CTGGTC
66 CGACTAGAGAGGCATAATGTGCAAGCCGGGGATCAGCCCAGTCCCCCTCTGCGTGCTGTC-AGTC
* *
34224334 CCGCTACCACAACCCTCGGTCCGGCTGAGACTTAGACATGGAATGATCTCCCTATGCCTAAGCCA
130 CCGCTACCAC-ACCCTCGGTCCGGCTGAGACTCAGACATGGAATGAACT-CCTATGCCTAAGCCA
* * * *
34224399 ACCCACGAAAGGGGCGTGCGGGCCCTCAG-CTGACCGGAGAGGCAGAATGAGCAAGTCGGGGATC
193 ACCCACGAAAGGGACGAGCGGGCCCTCAGTC-GACCGAAGAGGCAGAATGAGCAAGCCGGGGATC
* * * * * * *
34224463 -GGTCTGAT-CCCCCCTGCGTATTGTCGATCCTGCT-ATCGCAACCCTCGGTCCGGTCTGGTCTT
257 AGCTC-GATCCCCCCCTGCGTACTGTCGATCCTACTGCT-GCAACCCCCGGTCCGGTCCGATCTT
*
34224525 AGACTGGGAATGAACTCCGTATG
320 AGACTGGGAATGAACTCCATATG
* * *
34224548 CTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCATGAAATGAGTGTGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGTGCTGAGC
* * **
34224613 CAACTAGAGACGCAGGATGTGCAAGCCGGGGATCA
66 CGACTAGAGAGGCATAATGTGCAAGCCGGGGATCA
34224648 AACGGGTGGT
Statistics
Matches: 373, Mismatches: 61, Indels: 14
0.83 0.14 0.03
Matches are distributed among these distances:
340 1 0.00
341 110 0.29
342 131 0.35
343 131 0.35
ACGTcount: A:0.23, C:0.28, G:0.29, T:0.20
Consensus pattern (342 bp):
CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGTGCTGAGC
CGACTAGAGAGGCATAATGTGCAAGCCGGGGATCAGCCCAGTCCCCCTCTGCGTGCTGTCAGTCC
CGCTACCACACCCTCGGTCCGGCTGAGACTCAGACATGGAATGAACTCCTATGCCTAAGCCAACC
CACGAAAGGGACGAGCGGGCCCTCAGTCGACCGAAGAGGCAGAATGAGCAAGCCGGGGATCAGCT
CGATCCCCCCCTGCGTACTGTCGATCCTACTGCTGCAACCCCCGGTCCGGTCCGATCTTAGACTG
GGAATGAACTCCATATG
Found at i:34225255 original size:26 final size:26
Alignment explanation
Indices: 34225219--34225268 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
34225209 TCAAAATCTA
*
34225219 AGACTTGGAATGAACTCCATATGCTT
1 AGACATGGAATGAACTCCATATGCTT
*
34225245 AGACATGGAATGAACTCCGTATGC
1 AGACATGGAATGAACTCCATATGC
34225269 CTAAGCCAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.26
Consensus pattern (26 bp):
AGACATGGAATGAACTCCATATGCTT
Found at i:34225758 original size:158 final size:157
Alignment explanation
Indices: 34225242--34226059 Score: 655
Period size: 158 Copynumber: 5.2 Consensus size: 157
34225232 ACTCCATATG
* *
34225242 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCAGGCGCTCAAC
1 CTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACAAGCGTGCAGGCGCTCAGC
* * * * * *
34225307 CGATCGGAGAGGCAGAATGTGCAAGCTGGGGATCAGCCCGATCCCCCCCTATGTGCTGTCAATCC
65 CGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGT-CCCCCCTACGTGCTGTCGATCC
* * * * *
34225372 TACTATCGTAACCCTCGGTCTGGTCTGAT
129 TGCTACCGCAACCCTCGGTCCGATCTGAT
* * * * * * * **
34225401 CTTAGACTAGGAAAGAACT-CGTATGTCTAGGTCAACCCACGAAACAAGTGTGTAGGCGCTGGGC
1 CTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACAAGCGTGCAGGCGCTCAGC
* * ** * * * * *
34225465 CGACCGGAGAGTCTTAATGCGCAAGCTGGGGATTGGCCCGGACCCCCTCTATGTGCTGTCGGTCC
65 CGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCC-CTACGTGCTGTCGATCC
** * * * * *
34225530 CACTGCCAG-AACCCTCAGTTCG-GCTGGGGT
129 TGCTACC-GCAACCCTCGGTCCGATCT--GAT
* * **
34225560 -TTAGATATGGAATGAACTCCCTATGCCTGAA-CCAACCCACAAAACGGGCGTGC-GAGCGCTCA
1 CTTAGA-CTGGAATGAACTCCGTATGCCT-AAGCCAACCCACAAAACAAGCGTGCAG-GCGCTCA
* * *
34225622 GCCGATCGAAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGGTCCCCCCTACGTGCTGCCGATC
63 GCCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTACGTGCTGTCGATC
* *
34225687 CTGCTACCGCAACCCTTGGTCTGATCTGAT
128 CTGCTACCGCAACCCTCGGTCCGATCTGAT
* ** * * * *
34225717 CTTAGACTGAGAATGAACTCCGTAAGCCTAAGTAAACCCACAAAATAAGCGTGCAGGTGTTGAGC
1 CTTAGACTG-GAATGAACTCCGTATGCCTAAGCCAACCCACAAAACAAGCGTGCAGGCGCTCAGC
* * * * * * *
34225782 CGACCGGAGAGGCATAATGCACAAGCCGGGGATTGGCCC-GTCCTCCTCTGCGTGCTGTCGGTTC
65 CGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCC-CCCCTACGTGCTGTC-GATC
* * **
34225846 C-GCTACCACAACCCTCGGTCCCA-CTGGGG
128 CTGCTACCGCAACCCTCGGTCCGATCT-GAT
* * * ** ** * * *
34225875 CTTAGATATGGAATGAACTCCCTATGCATAAGCCAACCCATGAAACGGGTGCGCAGGCGCTCAGT
1 CTTAGA-CTGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACAAGCGTGCAGGCGCTCAGC
* * * * * * **
34225940 CGGTTGGAGAGGCAAAAAGCACAAGCCGAGGATCGGTTCGGTCCCCCCTACGTGCTGTCGATCCT
65 CGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTACGTGCTGTCGATCCT
* * *
34226005 GCTGCCGCAACCCTTGGTCCGGTCTGAT
130 GCTACCGCAACCCTCGGTCCGATCTGAT
34226033 CTTAGACTGAGAATGAACTCCGTATGC
1 CTTAGACTG-GAATGAACTCCGTATGC
34226060 TTAGACTGGG
Statistics
Matches: 507, Mismatches: 129, Indels: 47
0.74 0.19 0.07
Matches are distributed among these distances:
157 26 0.05
158 377 0.74
159 103 0.20
160 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (157 bp):
CTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACAAGCGTGCAGGCGCTCAGCC
GATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTACGTGCTGTCGATCCTG
CTACCGCAACCCTCGGTCCGATCTGAT
Found at i:34225923 original size:316 final size:318
Alignment explanation
Indices: 34225241--34226056 Score: 1000
Period size: 316 Copynumber: 2.6 Consensus size: 318
34225231 AACTCCATAT
* * *
34225241 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGC-AGGCGCTCA
1 GCTTAGATATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCGAGGCGCTCA
* * * * * * * *
34225305 ACCGATCGGAGAGGCAGAATGTGCAAGCTGGGGATCAGCCCGATCCCCCCCTATGTGCTGTCAAT
66 GCCGATCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGGT-CCCCCCTACGTGCTGTCGAT
* * * * * * * *
34225370 CCTACTATCGTAACCCTCGGTCTGGTCTGATCTTAGACT-AGGAAAGAACT-CGTATGTCTAGGT
130 CCTGCTACCGCAACCCTTGGTCTGGTCTGATCTTAGACTGA-GAATGAACTCCGTAAGCCTAAGT
* * * * * * * * *
34225433 CAACCCACGAAACAAGTGTGTAGGCGCTGGGCCGACCGGAGAGTCTTAATGCGCAAGCTGGGGAT
194 AAACCCACAAAACAAGCGTGCAGGCGCTGAGCCGACCGGAGAGGCATAATGCACAAGCCGGGGAT
* * * * **
34225498 TGGCCCGGACCCCCTCTATGTGCTGTCGGTCCCACTGCCAGAACCCTCAGTTCGGCTGGG
259 TGGCCCGGACCCCCTCTACGTGCTGTCGGTCCCACTACCACAACCCTCAGTCCCACTGGG
*
34225558 GTTTAGATATGGAATGAACTCCCTATGCCTGAA-CCAACCCACAAAACGGGCGTGCGA-GCGCTC
1 GCTTAGATATGGAATGAACTCCCTATGCCT-AAGCCAACCCACAAAACGGGCGTGCGAGGCGCTC
* *
34225621 AGCCGATCGAAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGGTCCCCCCTACGTGCTGCCGAT
65 AGCCGATCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGGTCCCCCCTACGTGCTGTCGAT
*
34225686 CCTGCTACCGCAACCCTTGGTCTGATCTGATCTTAGACTGAGAATGAACTCCGTAAGCCTAAGTA
130 CCTGCTACCGCAACCCTTGGTCTGGTCTGATCTTAGACTGAGAATGAACTCCGTAAGCCTAAGTA
* * *
34225751 AACCCACAAAATAAGCGTGCAGGTGTTGAGCCGACCGGAGAGGCATAATGCACAAGCCGGGGATT
195 AACCCACAAAACAAGCGTGCAGGCGCTGAGCCGACCGGAGAGGCATAATGCACAAGCCGGGGATT
* * * * * *
34225816 GGCCC-GTCCTCCTCTGCGTGCTGTCGGTTCCGCTACCACAACCCTCGGTCCCACTGGG
260 GGCCCGGACCCCCTCTACGTGCTGTCGGTCCCACTACCACAACCCTCAGTCCCACTGGG
* **
34225874 GCTTAGATATGGAATGAACTCCCTATGCATAAGCCAACCCATGAAAC-GG-GTGCGCAGGCGCTC
1 GCTTAGATATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCG-AGGCGCTC
* * * * * * **
34225937 AGTCGGTTGGAGAGGCAAAAAGCACAAGCCGAGGATCGGTTCGGTCCCCCCTACGTGCTGTCGAT
65 AGCCGATCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGGTCCCCCCTACGTGCTGTCGAT
* *
34226002 CCTGCTGCCGCAACCCTTGGTCCGGTCTGATCTTAGACTGAGAATGAACTCCGTA
130 CCTGCTACCGCAACCCTTGGTCTGGTCTGATCTTAGACTGAGAATGAACTCCGTA
34226057 TGCTTAGACT
Statistics
Matches: 428, Mismatches: 64, Indels: 15
0.84 0.13 0.03
Matches are distributed among these distances:
314 5 0.01
315 5 0.01
316 253 0.59
317 162 0.38
318 3 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (318 bp):
GCTTAGATATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCGAGGCGCTCA
GCCGATCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGGTCCCCCCTACGTGCTGTCGATC
CTGCTACCGCAACCCTTGGTCTGGTCTGATCTTAGACTGAGAATGAACTCCGTAAGCCTAAGTAA
ACCCACAAAACAAGCGTGCAGGCGCTGAGCCGACCGGAGAGGCATAATGCACAAGCCGGGGATTG
GCCCGGACCCCCTCTACGTGCTGTCGGTCCCACTACCACAACCCTCAGTCCCACTGGG
Found at i:34226062 original size:26 final size:26
Alignment explanation
Indices: 34226033--34226085 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
34226023 CCGGTCTGAT
34226033 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
* * *
34226059 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
34226085 C
1 C
34226086 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:34226931 original size:26 final size:26
Alignment explanation
Indices: 34226902--34226954 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
34226892 CTGGTTCGAT
*
34226902 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATAAACTCTGTATG
* *
34226928 CTTAGATTGGGGATAAACTCTGTATG
1 CTTAGACTGGGAATAAACTCTGTATG
34226954 C
1 C
34226955 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCTGTATG
Found at i:34227662 original size:26 final size:26
Alignment explanation
Indices: 34227624--34227676 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34227614 GGCTCAAAAT
34227624 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
34227650 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
34227676 C
1 C
34227677 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:34228013 original size:159 final size:159
Alignment explanation
Indices: 34227649--34228014 Score: 353
Period size: 159 Copynumber: 2.3 Consensus size: 159
34227639 AACTCCATAT
* *
34227649 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTTAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATGCGGGCGCTTAA
* * * * * * * *
34227714 CGGACCGGAGAGGTAGAATGTGCAAGCCGGGGATTGGCCTGGTCCCCCCCTGTGTGCTATCGATC
66 CCGACCGAAGAGGCAGAAAGCGCAAGCCGGGGATCGGCCTGATCCCCCCCTGTGTGCTACCGATC
* *
34227779 CTACTACCGCAACCCTCAGTCTGATTCGA
131 CTACTACCACAACCCTCAGTCGGATTCGA
* * ** * ** ** * *
34227808 TCTTAGAC-TAAGAATGAACTTTGAATGCAAAAGTTAACCTATGAAATGAGCATGCGGGCG-TTG
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATGCGGGCGCTT-
* * * * * *
34227871 AACCGACCGAAGAGGCATAAAGCGCAAGTCGGGGATCGGCTTGATCCCCCTCTGTGTGCTGCCGG
64 AACCGACCGAAGAGGCAGAAAGCGCAAGCCGGGGATCGGCCTGATCCCCCCCTGTGTGCTACCGA
* * * *
34227936 TCTTGCTACCACAACCCTC-GATCCGGA-TGGG
129 TCCTACTACCACAACCCTCAG-T-CGGATTCGA
* *
34227967 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCGACGAAATG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATG
34228015 GATGTGTGGG
Statistics
Matches: 157, Mismatches: 45, Indels: 10
0.74 0.21 0.05
Matches are distributed among these distances:
158 4 0.03
159 149 0.95
160 4 0.03
ACGTcount: A:0.26, C:0.27, G:0.27, T:0.20
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATGCGGGCGCTTAA
CCGACCGAAGAGGCAGAAAGCGCAAGCCGGGGATCGGCCTGATCCCCCCCTGTGTGCTACCGATC
CTACTACCACAACCCTCAGTCGGATTCGA
Found at i:34228155 original size:26 final size:26
Alignment explanation
Indices: 34228126--34228181 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
34228116 CCGGTCCTAT
*
34228126 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
34228152 CTTAGACTGGGGATGACCTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
34228178 CTTA
1 CTTA
34228182 AGTCAACCCA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:34229671 original size:26 final size:26
Alignment explanation
Indices: 34229633--34229685 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34229623 GGCTCAAAAT
*
34229633 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
34229659 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
34229685 C
1 C
34229686 CTAAACCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:34229987 original size:159 final size:154
Alignment explanation
Indices: 34229658--34230157 Score: 470
Period size: 159 Copynumber: 3.2 Consensus size: 154
34229648 AACTCCGTAT
* * * * *
34229658 GCTTAGACATGGAATGAACTCCATATGCCTAAACCAACCCATGGAACGAGCGTGCGGG-TCAACC
1 GCTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTCCGGGCTCAGCC
* * * * * *
34229722 GGTCGGAGAGGCAGAATGCGCAAGTCGAGGATCGGCCCGATCCCCCCTACGTGCTGTCGATCTTG
65 GGTCGAAGAGGCAGAATGCGCAAGCCG-GGATCGGCCCGATCCCCCCTGCGTGCTATCGATCCTA
* * *
34229787 CTGTCGCAACCCTTGGTCCGATCTGA
129 CTGCCGTAACCCTCGGTCCGATCTGA
* * * * *
34229813 TCTTAGACTGCGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTACCGGCGCTGAG
1 GCTTAGACTG-GAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGT-CCGG-GCTCAG
* * * *
34229878 CCGGCCGAAGAGGCATAATGCGCAAGCCAGGGATCGACCCGATCCCCCTCTGCGTGCTACCGATC
63 CCGGTCGAAGAGGCAGAATGCGCAAGCC-GGGATCGGCCCGATCCCCC-CTGCGTGCTATCGATC
* * * *
34229943 CCACTGCCATAACCCTCGGTCC-AGCTTGG
126 CTACTGCCGTAACCCTCGGTCCGATC-TGA
* * * * *
34229972 GCTTAGACATGGAATGAACTCCCTATGCCTACGCCAACCCATGAAAC-AGGGGTGCAGGTGCTTA
1 GCTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGA-GCGT-CCGG-GCTCA
* *
34230036 GCCGGTC-AGAGAGGCAGAATGCGTAAGCCTGGGATCGGTCC-ATCCCCCCCTGCGTGCTATCGA
62 GCCGGTCGA-AGAGGCAGAATGCGCAAGCC-GGGATCGGCCCGAT-CCCCCCTGCGTGCTATCGA
* * *
34230099 TCCTACTACCGTAACCCTCAGTCCGGTCTGA
124 TCCTACTGCCGTAACCCTCGGTCCGATCTGA
* *
34230130 TCTTAGACTAGGATTGAACTCCGTATGC
1 GCTTAGACT-GGAATGAACTCCGTATGC
34230158 TTAGACTGGG
Statistics
Matches: 277, Mismatches: 55, Indels: 23
0.78 0.15 0.06
Matches are distributed among these distances:
154 2 0.01
155 43 0.16
156 3 0.01
157 2 0.01
158 107 0.39
159 118 0.43
160 2 0.01
ACGTcount: A:0.23, C:0.31, G:0.26, T:0.20
Consensus pattern (154 bp):
GCTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTCCGGGCTCAGCCG
GTCGAAGAGGCAGAATGCGCAAGCCGGGATCGGCCCGATCCCCCCTGCGTGCTATCGATCCTACT
GCCGTAACCCTCGGTCCGATCTGA
Found at i:34230160 original size:26 final size:26
Alignment explanation
Indices: 34230131--34230196 Score: 98
Period size: 26 Copynumber: 2.5 Consensus size: 26
34230121 CCGGTCTGAT
34230131 CTTAGACT-AGGATTGAACTCCGTATG
1 CTTAGACTGAGGA-TGAACTCCGTATG
*
34230157 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGAGGATGAACTCCGTATG
*
34230183 CTTAGACTGGGGAT
1 CTTAGACTGAGGAT
34230197 ATGCCTAAGT
Statistics
Matches: 38, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
26 35 0.92
27 3 0.08
ACGTcount: A:0.24, C:0.18, G:0.29, T:0.29
Consensus pattern (26 bp):
CTTAGACTGAGGATGAACTCCGTATG
Found at i:34230553 original size:26 final size:26
Alignment explanation
Indices: 34230524--34230593 Score: 140
Period size: 26 Copynumber: 2.7 Consensus size: 26
34230514 TCTTAGATTG
34230524 GGAATGAACTCCGTATGCTTAGACAT
1 GGAATGAACTCCGTATGCTTAGACAT
34230550 GGAATGAACTCCGTATGCTTAGACAT
1 GGAATGAACTCCGTATGCTTAGACAT
34230576 GGAATGAACTCCGTATGC
1 GGAATGAACTCCGTATGC
34230594 CTAAGCCAAC
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 44 1.00
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (26 bp):
GGAATGAACTCCGTATGCTTAGACAT
Found at i:34232293 original size:26 final size:26
Alignment explanation
Indices: 34232264--34232316 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
34232254 CCGGTTTGAT
*
34232264 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
34232290 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
34232316 C
1 C
34232317 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:34233324 original size:159 final size:156
Alignment explanation
Indices: 34232852--34233346 Score: 467
Period size: 159 Copynumber: 3.1 Consensus size: 156
34232842 GCTAAGACAT
* * **
34232852 GGAATTAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCAT-GCGGGTGCTCAGTCGGTCGGA
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAG--TGGCGGGTGCTCAGTCGACCGGA
* * ** ** * * *
34232916 GAGGCAGAATGCACAAGCCGGGGATTGGCCCAGTCCCCCCCTGCGTACTGTCGATCCTACTACCA
64 GAGGCAGAATGCGCAAGTCGGGGATCAGCCTGGT--CCCCCTTCGTACTGCCGATCCTGCTACCA
* **
34232981 CAACCATCGGTCCAGTCCAATCTTAGACTG
127 CAACCATCGGTCTAGTCTGATCTTAGACTG
* * * *
34233011 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATAAGTGCGCGGGTGCTGAGCCGACCGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGTG-GCGGGTGCTCAGTCGACCGGAG
* * * * *
34233076 AGGCATAATGCGCAAGTCGGGGATCAGCCTGGTCCCCCTCTACGTGCTGCAGCT-CTCGCTGCCA
65 AGGCAGAATGCGCAAGTCGGGGATCAGCCTGGTCCCCCT-T-CGTACTGCCGATCCT-GCTACCA
* * * * **
34233140 CAACCCTTGGT-TCGGCTGGGGCTTAGACAT-
127 CAACCATCGGTCTAGTCT-GATCTTAGAC-TG
* * *
34233170 GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATTGGAGTGGAGGGCGCTCAGTCGACCGGA
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA-T-GAGTGGCGGGTGCTCAGTCGACCGGA
* * * * * *
34233235 GAGGCAGAATGCGTAAGTCGAGGATCAGCCTGGTCCGCACTTTGTACTACCGATCCTGCTACCGC
64 GAGGCAGAATGCGCAAGTCGGGGATCAGCCTGGTCC-CCCTTCGTACTGCCGATCCTGCTACCAC
*
34233300 AACAATCGGTCTAGTCTGATCTTAGACTG
128 AACCATCGGTCTAGTCTGATCTTAGACTG
*
34233329 GGAATGAACTCTGTATGC
1 GGAATGAACTCCGTATGC
34233347 TTAGATTGGG
Statistics
Matches: 265, Mismatches: 58, Indels: 26
0.76 0.17 0.07
Matches are distributed among these distances:
157 7 0.03
158 5 0.02
159 187 0.71
160 59 0.22
161 7 0.03
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (156 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGTGGCGGGTGCTCAGTCGACCGGAGA
GGCAGAATGCGCAAGTCGGGGATCAGCCTGGTCCCCCTTCGTACTGCCGATCCTGCTACCACAAC
CATCGGTCTAGTCTGATCTTAGACTG
Found at i:34233349 original size:26 final size:26
Alignment explanation
Indices: 34233320--34233372 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
34233310 CTAGTCTGAT
34233320 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
* *
34233346 CTTAGATTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
34233372 C
1 C
34233373 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:34233750 original size:26 final size:26
Alignment explanation
Indices: 34233699--34233751 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
34233689 CCGATCTGAT
**
34233699 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
34233725 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
34233751 C
1 C
34233752 CTAGGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:34234023 original size:159 final size:157
Alignment explanation
Indices: 34233725--34234219 Score: 501
Period size: 159 Copynumber: 3.1 Consensus size: 157
34233715 ACTCTGTATG
* * * * *
34233725 CTTAGACATGGAATGAACTCCATATGCCTAGGCCAACCCACAAAATAAGTGTGCAGGCGCTTAGC
1 CTTAGACATGGAATGAACTCC-TATGCCTAAGCCAACCCACGAAATGAGTGTGCGGGCGCTCAGC
* * * ** **
34233790 CGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCAATCCTCCCCTACGTGCTGTTGATCC
65 CGACCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCTGATCC-CCCCTACGTGCTGCCGATCC
* * *
34233855 TACTACCACAACCCTTAGTCCGATCCGAT
129 TGCTGCCACAACCCTTGGTCCGATCCGAT
* * * *
34233884 CTTAGAC-TGGGAATGAACTCCGTTTGCCTAAGTCAACCCACGAAATGAGTGTGCGGGCCCTGAG
1 CTTAGACAT-GGAATGAACTCC-TATGCCTAAGCCAACCCACGAAATGAGTGTGCGGGCGCTCAG
* * * * * *
34233948 CCGACCAGAGAGGCATAATGTGCAAGTCGGGGATCGGCCTGGTCCCCCTCTATGTGCTACCGATC
64 CCGACCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCTGATCCCCC-CTACGTGCTGCCGATC
* * * **
34234013 CCGCTGCCACAACCCTTGGTCC-AGCTAGGG
128 CTGCTGCCACAACCCTTGGTCCGATC-CGAT
* * * * *
34234043 CTTGGACATGGAATGAACTCTCTATGCCTAAGCCAACCCTCGAAACGGGCGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTC-CTATGCCTAAGCCAACCCACGAAATGAGTGTGCGGGCGCTCAGC
* * *
34234108 CGGCCGGAGAGGCAGAATGCGCAAGTCGGGGATTGGCCTGATCCCCCCTACGTGCTGCCGATCTT
65 CGACCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCTGATCCCCCCTACGTGCTGCCGATCCT
* * * * *
34234173 GCTGTCGCAACCCTCGGTCTGGTCCGAT
130 GCTGCCACAACCCTTGGTCCGATCCGAT
*
34234201 CCTAGAC-TGGGAATGAACT
1 CTTAGACAT-GGAATGAACT
34234220 TTGTATGCTT
Statistics
Matches: 269, Mismatches: 60, Indels: 15
0.78 0.17 0.04
Matches are distributed among these distances:
157 1 0.00
158 52 0.19
159 214 0.80
160 2 0.01
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.20
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCTATGCCTAAGCCAACCCACGAAATGAGTGTGCGGGCGCTCAGCC
GACCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCTGATCCCCCCTACGTGCTGCCGATCCTG
CTGCCACAACCCTTGGTCCGATCCGAT
Found at i:34234251 original size:26 final size:26
Alignment explanation
Indices: 34234203--34234253 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
34234193 GGTCCGATCC
**
34234203 TAGACTGGGAATGAACTTTGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
*
34234229 TAGACTGGGGATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
34234254 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.16, G:0.29, T:0.29
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:34235574 original size:26 final size:26
Alignment explanation
Indices: 34235536--34235588 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34235526 GGCTCAAAAT
34235536 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
34235562 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
34235588 C
1 C
34235589 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:34236805 original size:26 final size:26
Alignment explanation
Indices: 34236769--34236821 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
34236759 CTAGTCCGAT
*
34236769 CTTAGA-TTGGGATTGAAC-TCTGTATG
1 CTTAGACTGGGGA-TGAACTTC-GTATG
34236795 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGGATGAACTTCGTATG
34236821 C
1 C
34236822 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
26 17 0.71
27 7 0.29
ACGTcount: A:0.23, C:0.15, G:0.28, T:0.34
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTTCGTATG
Found at i:34237420 original size:11 final size:11
Alignment explanation
Indices: 34237400--34237432 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
34237390 CGGTTAGGCT
*
34237400 CTCCGGCGATG
1 CTCCGACGATG
34237411 CTCCGACGATG
1 CTCCGACGATG
34237422 CTCCGACGATG
1 CTCCGACGATG
34237433 GGGCCCTGAG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.15, C:0.36, G:0.30, T:0.18
Consensus pattern (11 bp):
CTCCGACGATG
Found at i:34237540 original size:26 final size:26
Alignment explanation
Indices: 34237502--34237554 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34237492 GGCTTAAACT
34237502 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
34237528 CTTAGACAT-GGAATGAACTTCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
34237554 C
1 C
34237555 ATAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34238176 original size:196 final size:195
Alignment explanation
Indices: 34237823--34238765 Score: 667
Period size: 196 Copynumber: 4.8 Consensus size: 195
34237813 CATGCTGCTC
* * * * *
34237823 CAACCCTCGGTCTGGTTCAATCTTAGACTGGGAATGAACTCCGCATGCTTAGACTGGGGATAAAC
1 CAACCCTCTGTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAAC
* * * * * **
34237888 TCTGTATGCCTAAGTAAACCCATGAAACGAGCGTACGGGCGCTCAGCCGATCGGAGAGGTGGAAT
66 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGATCGGAGAGGCAGAAT
* * * * * *
34237953 GCGCAAGCCGGGGATTCACCCGATCCCCCCTACGTGCTATTGATCCTGCTGCTGGTCTTGCTGCC
131 GCGTAAGCCGGGGACTGACCCGATCCCCCCTACGTGCTATCGA-CCTGCTGCTGGTCCTACTGCC
*
34238018 G
195 A
* * * *
34238019 CAACCCCCTGTCCGGTTCGATCTTAGATTGGGAATGAACTCCGTATACTTAGACAT-GGAATGAA
1 CAACCCTCTGTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC-TGGGGATGAA
34238083 CTCCGTATGCCTAAG-CTAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGATCGGAGAGGCAGA
65 CTCCGTATGCCTAAGTC-AACCCACGAAACGAGCGTGCGGGTGCTCAGCCGATCGGAGAGGCAGA
*
34238147 ATGCGTAAGCCGGGGACTGACCCGATCCCCCCTGCGTGCTATCGA--T-CT--T-G--CTACTGC
129 ATGCGTAAGCCGGGGACTGACCCGATCCCCCCTACGTGCTATCGACCTGCTGCTGGTCCTACTGC
*
34238204 AA
194 CA
* * * * *
34238206 CAA---TC-GATTCGATCCGATCTTGGACTGGGAATGAACTCCGTATGCTTAAACTGGGGATGAA
1 CAACCCTCTG-TCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAA
* * * * *
34238267 CTCCGTATGCCTAAGTCAACCCAC-AGAATGAGTGTGCGGGCGCTCAGCCGACCGGACAGGCCGA
65 CTCCGTATGCCTAAGTCAACCCACGA-AACGAGCGTGCGGGTGCTCAGCCGATCGGAGAGG-C-A
* * ** * ** * * * * * * *
34238331 CCGAAAAGGCATAATG-C-GTAAGCTGA--GGAT-CGACCT-GGTCCT-CCTACGTGCTGCCGAT
127 --G--AATGCGTAA-GCCGGGGA-CTGACCCGATCCCCCCTACGTGCTATCGACCTGCTGCTGGT
*
34238389 CCTATTGCCA
186 CCTACTGCCA
* * * * *
34238399 TAACCCTCAGTCTGGTTCGATCTTAGACTGGGAATGAATTCCGTATGCTTAGATTGGGGATGAAC
1 CAACCCTCTGTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAAC
* * * *
34238464 TCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGTGGGTGCTCAACCGATCGAAAAAACTGGTC
66 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTC-A--G--C-------C-GATC
** * * * * * *
34238529 GGAGAGGCAGAATGCACAAGTCGGGGACCGGCCCGATCCCCCCTACGTGCTGTCGATCCTACTAC
118 GGAGAGGCAGAATGCGTAAGCCGGGGACTGACCCGATCCCCCCTACGTGCTATCGA-CCTGCTGC
* * *
34238594 TGGTCCTGCTACCG
182 TGGTCCTACTGCCA
* * * * *
34238608 CAACCCTC-GATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAT-AGAATAA
1 CAACCCTCTG-TCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC-TGGGGATGA
* * * * * * * *
34238671 ACTCCGTATGCCTAAGCCAACCTAAGAAACGAGTGTACGGGTGATCAGTCGATCAGAGAGGCAGA
64 ACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGATCGGAGAGGCAGA
* **
34238736 ATACGTAAGCCAAGGA-TCGACCCGATCCCC
129 ATGCGTAAGCCGGGGACT-GACCCGATCCCC
34238766 TCTGTGTGCT
Statistics
Matches: 576, Mismatches: 120, Indels: 102
0.72 0.15 0.13
Matches are distributed among these distances:
183 3 0.01
184 96 0.17
185 4 0.01
186 5 0.01
187 13 0.02
188 6 0.01
189 3 0.01
190 13 0.02
191 1 0.00
192 2 0.00
193 10 0.02
196 268 0.47
197 5 0.01
199 1 0.00
201 1 0.00
202 1 0.00
203 10 0.02
204 2 0.00
205 4 0.01
206 5 0.01
207 5 0.01
208 6 0.01
209 111 0.19
210 1 0.00
ACGTcount: A:0.25, C:0.27, G:0.26, T:0.21
Consensus pattern (195 bp):
CAACCCTCTGTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAAC
TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGATCGGAGAGGCAGAAT
GCGTAAGCCGGGGACTGACCCGATCCCCCCTACGTGCTATCGACCTGCTGCTGGTCCTACTGCCA
Found at i:34238456 original size:26 final size:26
Alignment explanation
Indices: 34238420--34238472 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
34238410 CTGGTTCGAT
*
34238420 CTTAGACTGGGAATGAATTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
34238446 CTTAGATTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
34238472 C
1 C
34238473 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Done.