Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 376 of 402
Found at i:34240051 original size:26 final size:26
Alignment explanation
Indices: 34239999--34240051 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
34239989 CCAGTCCGAT
**
34239999 CTTAGACTAGGAATGAACTTTGCATG
1 CTTAGACTAGGAATGAACTCCGCATG
* *
34240025 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGCATG
34240051 C
1 C
34240052 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGCATG
Found at i:34241147 original size:159 final size:159
Alignment explanation
Indices: 34240783--34241147 Score: 359
Period size: 159 Copynumber: 2.3 Consensus size: 159
34240773 TGCTACCCGT
* * * *
34240783 AACCCTCAGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
1 AACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA
* ** * * * ** * *
34240848 CGAGCGTGCGGGCGCTAAGCCGACCGGAGAGGCATAATGTGCAAGCTGGGGATCGGCCCGGTCCC
66 CAAGCAAGCGGGCACTAAGCCGACCAGAGAGGCAGAATGCACAAGCCGGGGATCGACCCGGTCCC
34240913 CCTCTGCATCCTGCTGATCCCGCTGCCAC
131 CCTCTGCATCCTGCTGATCCCGCTGCCAC
** * * *
34240942 AACCCTCGGTCTGG-CTGGGGCTAAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGA
1 AACCCTCGGTCTGGTCT-GATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGA
* **
34241005 AACAAGTAAGCGGGCACTCAA-CCGGTCAGAGAGGCAGAATGCACAAGCCGGGGATCGACCCGGT
64 AACAAGCAAGCGGGCACT-AAGCCGACCAGAGAGGCAGAATGCACAAGCCGGGGATCGACCCGGT
* * *
34241069 CCCCC-C-G-A-CCGTGCTACCGATCCTGCTGTCGC
128 CCCCCTCTGCATCC-TGCT---GATCCCGCTGCCAC
* *
34241101 AACCCTTGGT-TCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGC
1 AACCCTCGGTCT-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
34241148 TTATACTGGA
Statistics
Matches: 165, Mismatches: 31, Indels: 20
0.76 0.14 0.09
Matches are distributed among these distances:
155 2 0.01
156 5 0.03
157 1 0.01
158 5 0.03
159 147 0.89
160 5 0.03
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (159 bp):
AACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA
CAAGCAAGCGGGCACTAAGCCGACCAGAGAGGCAGAATGCACAAGCCGGGGATCGACCCGGTCCC
CCTCTGCATCCTGCTGATCCCGCTGCCAC
Found at i:34241150 original size:26 final size:26
Alignment explanation
Indices: 34241121--34241199 Score: 104
Period size: 26 Copynumber: 3.0 Consensus size: 26
34241111 TCGGTCTGAT
*
34241121 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
34241147 CTTATACTGGAAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
34241173 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
34241199 C
1 C
34241200 CTAAGTCAAC
Statistics
Matches: 44, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 44 1.00
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34243437 original size:26 final size:26
Alignment explanation
Indices: 34243408--34243463 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
34243398 TTGGTCCGAT
*
34243408 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
34243434 CTTAGATTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
34243460 CTTA
1 CTTA
34243464 AGTCAACCCA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:34244322 original size:26 final size:26
Alignment explanation
Indices: 34244286--34244338 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34244276 CTGGTCTGAT
*
34244286 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
34244312 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
34244338 C
1 C
34244339 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:34244927 original size:880 final size:870
Alignment explanation
Indices: 34243101--34244928 Score: 2144
Period size: 878 Copynumber: 2.1 Consensus size: 870
34243091 GCTTAGGCAT
* * * * * *
34243101 GGAATGAACTCCGTATGCATATGTCAACCAACGAAATGAGCGTGCTGGCGTTGAGCTGGCCGAAG
1 GGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAGC-CGCCGAAG
* **** *
34243166 AGGCATAATGTGCAAGCCGGGGATCGGCTTGGTCCCCCTTTACATGCTGTCAGTCCTACTGCCAC
65 AGGCATAATGAGCAAGCCGGGGATCGGCCCAATCCCCCTCTACATGCTGTCAGTCCTA-TGCCAC
* * *
34243231 AACTCTCGGTCTGGCTTGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA
129 AACCCTCGGTCCGGCTTGGGCTTAGACATGAAATGAACTCCCTATGCCTAAGCCAACCCACGAAA
* * * * * * * * *
34243296 CGGGCATGCTGGTGCTCAGCCGGCCGGAGAGGCAAAATGCACAAGTCGGGGATTGGCCCGGTCCC
194 CAGGCATGCGGGCGCACAGCCGACCGGAGAGGCAAAATGCACAAGCCGGGGATCGACACGGTCCC
* * *
34243361 CCTACGTGCTACCGATCCTACTACCGCAACCCTCAGTTTGGTCCGATCTTAGACTGGGAATGAAC
259 CCTACATGCTACAGATCCTACTACCGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAAC
* * * *
34243426 TCCGTATGCTTAGATTGGGGATGAACTCCATATGCTTAAGTCAACCCACGAAACGAGCATGTGGG
324 TCCGTATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCACGAAACAAGCATGCGGG
* * * * * **
34243491 CTCTTAGCCGACCGAAGAGGCATAATACGCAAGCTGGGGATCAGCCCAGTCCCCCTCTGTATGCT
389 CGCTCAGCCGACAGAAGAGGCATAATACGCAAGCCGGGGATCAACCCAGTCCCCCTCTACATGCT
*
34243556 ATCGATCCCGCTGTCGGTCCTGCTACCATAACCCTCGGTCCGACTAGGGCTTAGACATGGAATGA
454 ATCGATCCCGATGTCGGTCCTGCTACCATAACCCTCGGTCCGACTAGGGCTTAGACATGGAATGA
* * ** *
34243621 ACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGAGTGCTCAGCCAGTCAGAGAGGCAGA
519 ACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCACTCAGCCAGCCAGAGAGGCAGA
** *
34243686 ATGTGCAAGCCGAGGATCGACCCGGTCCCCCTACGTGCTGTCGATCTTGCTACTGGTCCTACTGC
584 ATGCACAAGCCGAGGATCGACCCGGTCCCCC-AC--GCTGTC-A--TTGCTACTGATCCTACTGC
* * * *
34243751 TGGTCTTGCTACTGCAACCCTCGGTCCGGTTCAATCTTAGACTAGGAATGAACTCCGTATACTTT
643 TGGTCCTGCTACCGCAACCCTCGATCCGGTTCAATCTTAGACTAGGAATGAACTCCGTATACTTA
* * * **
34243816 GACATGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAACGAGCGTGCGGGTGCTCAGTCAAT
708 GACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACAAACGTGCGGCCGCTCAGTCAAT
* * * * *
34243881 CGGAGAGGCAGAATATGTAAGTCGGGGATTGGCTCGATCCCCCCTACGTGCTGTCGATCCTGCTA
773 CGGAGAGGCAGAACACGTAAGCCGGGGATTGGCTCCATCCCCCCTACGTGCTGTCGATCCTCCTA
34243946 CCACAACCTTCGATCCGATCTGATCATAGACTG
838 CCACAACCTTCGATCCGATCTGATCATAGACTG
* * * *
34243979 GGAAT-ACACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGAGCGCTGAGTCGCCCGAA
1 GGAATGA-ACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAGCCG-CCGAA
34244043 GAGGCATAATGAGCAAGCCGGGGATCGGCCCAATCCCCCTCTACATGCT-TCCAGTCTCGT-TGC
64 GAGGCATAATGAGCAAGCCGGGGATCGGCCCAATCCCCCTCTACATGCTGT-CAGTC-C-TATGC
34244106 CACAACCCTCGGTCCGG-TTGGGGCTTAGACATGAAATGAACTCCCTATG-CTAAGCCAACCCAC
126 CACAACCCTCGGTCCGGCTT-GGGCTTAGACATGAAATGAACTCCCTATGCCTAAGCCAACCCAC
* * * *
34244169 GAAACAGGCGTGCGGGCGCACAG-CGTACGGGAGAGGCAGAATGTACAAGCCGGGGATCGACACG
190 GAAACAGGCATGCGGGCGCACAGCCG-ACCGGAGAGGCAAAATGCACAAGCCGGGGATCGACACG
** * * * * *
34244233 GTCCCTCCTACATGCTGTAGATCTTGCTATCGTAACCCTCAGTCTGGTCTGATCTTAGACTGGGA
254 GTCCC-CCTACATGCTACAGATCCTACTACCGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGA
* **
34244298 ATGAACTCCGTATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCATGAAACAAGTG
318 ATGAACTCCGTATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCACGAAACAAGCA
** *
34244363 TGCGGGCGCTCAGCCGGCCAGAGAGGCTAGTCAGAGAGGCATAATGTGCAAGCCGGGGATCAACT
383 TGCGGGCGCTCA----GCC---GA--C-AG--A-AGAGGCATAATACGCAAGCCGGGGATCAACC
* * * * *
34244428 C-GATCCCTCTCTACGTGCTGTCGATCCCGATG-CTGGTCCTGCTGCCATAATCCTCGGTCCGAC
435 CAG-TCCCCCTCTACATGCTATCGATCCCGATGTC-GGTCCTGCTACCATAACCCTCGGTCCGAC
*
34244491 TAGGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCAC
498 TAGGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCAC
* * * *
34244556 TCAGCCGGCC-GAAGAGGCAGAATGCACAAGCCGGGGTTCGACTCGG-CCCCC-C-CTGT-A-TG
563 TCAGCCAGCCAG-AGAGGCAGAATGCACAAGCCGAGGATCGACCCGGTCCCCCACGCTGTCATTG
* * ** * *
34244615 CTA-TCGATCCTGCTGCTGGTCCTGCTACCGCAACCGTCGATCCGGTTTGATCTTAGATTGGGAA
627 CTACT-GATCCTACTGCTGGTCCTGCTACCGCAACCCTCGATCCGGTTCAATCTTAGACTAGGAA
* * *
34244679 TGAACTTCGTATACTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACAAACGT
691 TGAACTCCGTATACTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACAAACGT
* * * *
34244744 G-GAGCCGCTCAGT-AGGTCGGAGAGGCAGAACGCGTAAGCCGGGGATTGGCTCCCTCCCCTCTA
756 GCG-GCCGCTCAGTCA-ATCGGAGAGGCAGAACACGTAAGCCGGGGATTGGCTCCATCCCCCCTA
* ** * * * * * *
34244807 CGTGTTGTCGATCCTCCTGTCACAACCATT-GGTTCGGTTTGTTCTTAGACTG
819 CGTGCTGTCGATCCTCCTACCACAACC-TTCGATCCGATCTGATCATAGACTG
* * *
34244859 GGAATGAACTCCGTATGCATAAGTGAACCCACGAAACGAGCGTGCGGGTGCTGAGCCAGCCAAAG
1 GGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAGCC-GCCGAAG
34244924 AGGCA
65 AGGCA
34244929 ATGAACTCCG
Statistics
Matches: 799, Mismatches: 121, Indels: 58
0.82 0.12 0.06
Matches are distributed among these distances:
876 2 0.00
877 72 0.09
878 261 0.33
879 4 0.01
880 260 0.33
881 4 0.01
882 3 0.00
883 1 0.00
885 6 0.01
887 1 0.00
888 2 0.00
890 9 0.01
891 174 0.22
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (870 bp):
GGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAGCCGCCGAAGA
GGCATAATGAGCAAGCCGGGGATCGGCCCAATCCCCCTCTACATGCTGTCAGTCCTATGCCACAA
CCCTCGGTCCGGCTTGGGCTTAGACATGAAATGAACTCCCTATGCCTAAGCCAACCCACGAAACA
GGCATGCGGGCGCACAGCCGACCGGAGAGGCAAAATGCACAAGCCGGGGATCGACACGGTCCCCC
TACATGCTACAGATCCTACTACCGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTC
CGTATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCACGAAACAAGCATGCGGGCG
CTCAGCCGACAGAAGAGGCATAATACGCAAGCCGGGGATCAACCCAGTCCCCCTCTACATGCTAT
CGATCCCGATGTCGGTCCTGCTACCATAACCCTCGGTCCGACTAGGGCTTAGACATGGAATGAAC
TCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCACTCAGCCAGCCAGAGAGGCAGAAT
GCACAAGCCGAGGATCGACCCGGTCCCCCACGCTGTCATTGCTACTGATCCTACTGCTGGTCCTG
CTACCGCAACCCTCGATCCGGTTCAATCTTAGACTAGGAATGAACTCCGTATACTTAGACATGGA
ATGAACTCCGTATGCCTAAGCCAACCCACAAAACAAACGTGCGGCCGCTCAGTCAATCGGAGAGG
CAGAACACGTAAGCCGGGGATTGGCTCCATCCCCCCTACGTGCTGTCGATCCTCCTACCACAACC
TTCGATCCGATCTGATCATAGACTG
Found at i:34246107 original size:159 final size:158
Alignment explanation
Indices: 34245679--34246181 Score: 431
Period size: 158 Copynumber: 3.2 Consensus size: 158
34245669 AACTCTGTAT
* * *
34245679 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTCCAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGGGCGTGCAGGCGCTCAG
* * **
34245744 CCAACCGGAGAGGCAGAATGCATAAGCCAAGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCC
66 CCAACCGGAGAGGCAGAATGCACAAGCCGAGGATCGGCCCGATCCCCCCTGCGTGCTACCGATCC
** * *
34245809 TGCTACTGCAACCCTCGGTCCGGTCTGA
131 TGCTACCACAACCCTCGATCCAGTCTGA
* * * * * * * *
34245837 TCTTAGA-TTGGAAATGAACTCCATATGCCTAAGTCAACCCACGAAATGAGTC-TGCGGGTGTTG
1 GCTTAGACATGG-AATGAACTCCATATGCCTAAGCCAACCCACGAAATG-GGCGTGCAGGCGCTC
* ** * * * ** * * * * ** *
34245900 AGTCGGCCGAAAAGGCATAATGTGCATGCCGGGGATCGACCCGGTCCCCTTTTGCGTGCTACCGG
64 AGCCAACCGGAGAGGCAGAATGCACAAGCCGAGGATCGGCCCGATCCCC-CCTGCGTGCTACCGA
* *
34245965 T-CTCGCTCCCACAACCCTCGATCCAGT-TGGG
128 TCCT-GCTACCACAACCCTCGATCCAGTCT-GA
* ** *
34245996 GCTTAGACATGGAATGGACTCTTTATGCCTAAGCCAACCCACGAAATGGGCGTGCAGACGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGGGCGTGCAGGCGCTCAG
* * * **
34246061 CCTACCGGAGAGGCAGAATGCACAAGCCGAGGATCGGTCCGATCCCCACTGCGTGCTGTCGATCC
66 CCAACCGGAGAGGCAGAATGCACAAGCCGAGGATCGGCCCGATCCCCCCTGCGTGCTACCGATCC
* ** * * *
34246126 TACTGTCGCAACCCTCGGTCCAGTCCGA
131 TGCTACCACAACCCTCGATCCAGTCTGA
* * *
34246154 TCCTAGAC-TGGGAATGAACTTCATATGC
1 GCTTAGACAT-GGAATGAACTCCATATGC
34246182 TCAGACTAGG
Statistics
Matches: 256, Mismatches: 79, Indels: 20
0.72 0.22 0.06
Matches are distributed among these distances:
157 4 0.02
158 136 0.53
159 113 0.44
160 3 0.01
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGGGCGTGCAGGCGCTCAG
CCAACCGGAGAGGCAGAATGCACAAGCCGAGGATCGGCCCGATCCCCCCTGCGTGCTACCGATCC
TGCTACCACAACCCTCGATCCAGTCTGA
Found at i:34247213 original size:26 final size:26
Alignment explanation
Indices: 34247184--34247234 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
34247174 GGTTCGATCT
*
34247184 TAGACTGGGAATGAACTCCGTATGCA
1 TAGACTGGGAATGAACTCCATATGCA
*
34247210 TAGACTGGGGATGAACTCCATATGC
1 TAGACTGGGAATGAACTCCATATGC
34247235 CGAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.24
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCATATGCA
Found at i:34248935 original size:159 final size:159
Alignment explanation
Indices: 34248586--34248936 Score: 398
Period size: 159 Copynumber: 2.2 Consensus size: 159
34248576 CCCCTGCATG
* * *
34248586 CTGTCGATCCTGCTACCGCAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCATATG
1 CTGTCGGTCCCGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCATATG
* * * * * *
34248651 CATAGGTCAACCAACGAAACCAGCGTACGGGCGCTAAGCCGGCCGAAGAGGCATAATGTACAAGA
66 CATAAGTCAACCAACAAAACCAGCATACAGGCGCTAAGCCGACCGAAGAGGCATAATGCACAAGA
* * *
34248716 CGAGGATCGATCCGATCCCCCTCTGCGTG
131 CGAGGATCGATCCGATACCCCTCTACGTA
* * * * * * ***
34248745 CTGCCGGTGCCACTATCGTAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTTTGTATG
1 CTGTCGGTCCCGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCATATG
* ** * * * *
34248810 CATAAGTCAACCCACAAAATGAGCATGCAGGTGCTGAGCCGACCGAAGAGGCATAATGCACAAGC
66 CATAAGTCAACCAACAAAACCAGCATACAGGCGCTAAGCCGACCGAAGAGGCATAATGCACAAGA
*
34248875 CGAGGATCG-GCTCGATACCCCTCTACGTA
131 CGAGGATCGATC-CGATACCCCTCTACGTA
* * *
34248904 CTGTCGGTCCCGCTGCCACAACCCTTGGTCCGG
1 CTGTCGGTCCCGCTACCGCAACCCTCGGTCCGG
34248937 CTAGGGCTTC
Statistics
Matches: 153, Mismatches: 38, Indels: 2
0.79 0.20 0.01
Matches are distributed among these distances:
158 1 0.01
159 152 0.99
ACGTcount: A:0.25, C:0.30, G:0.25, T:0.20
Consensus pattern (159 bp):
CTGTCGGTCCCGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCATATG
CATAAGTCAACCAACAAAACCAGCATACAGGCGCTAAGCCGACCGAAGAGGCATAATGCACAAGA
CGAGGATCGATCCGATACCCCTCTACGTA
Found at i:34249387 original size:183 final size:182
Alignment explanation
Indices: 34248947--34249387 Score: 478
Period size: 184 Copynumber: 2.4 Consensus size: 182
34248937 CTAGGGCTTC
* * * * * *
34248947 GACATGGAATGAACTCCCTATGCCTAGGCCAACCCACGAAACGGACGTACGGGTGCTCAGCCGAT
1 GACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGG-CGTGCGAGCGCTCAG-CGAC
* * * * * * *
34249012 CGGAGAGGTAGAATGTGTAAGCCGGGGATCGACCCGATCCCTCTTACGTGCTATCGATCCTGTTG
64 CGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCCTACGTGCTATCGATCCTGCTG
* * * *
34249077 CCGTAACCCTCGGTCCAGTTCGATCTTAGACTGGGAATTAACTCTGTATACTTA
129 CCATAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATACTTA
* * * * *
34249131 GACATGGAATGAACTTCGTATGCCTAAGCCAACCCCCGAAATGAGCGTGC-AGGCGCTTAGCTGG
1 GACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACG-GCGTGCGA-GCGCTCAGC-GA
* *
34249195 CCAGAGAGGCAGAATGCGCAAGCCAGGGATCCG-CCCGATCCCCCCTACGTGCTGTCGATCCTGC
63 CCGGAGAGGCAGAATGCGCAAGCCAGGGAT-CGACCCGATCCCCCCTACGTGCTATCGATCCTGC
* * *
34249259 TGCCATAACCCT-GGTTC-GATCCGATCTTAGATTGGGAATGAACTCCGTATGCTTA
127 TGCCATAACCCTCGGTCCAG-TCCGATCTTAGACTGGGAATGAACTCCGTATACTTA
* ** *
34249314 GAC-TAGGGATGATGTCCGTATGCCTAAGTCAACCCACGAAACGTGCGTGCGAGCGCTCAGTCGA
1 GACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACG-GCGTGCGAGCGCTCAG-CGA
34249378 CCGGAGAGGC
63 CCGGAGAGGC
34249388 CGACCGGAGA
Statistics
Matches: 211, Mismatches: 38, Indels: 17
0.79 0.14 0.06
Matches are distributed among these distances:
182 2 0.01
183 93 0.44
184 113 0.54
185 3 0.01
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (182 bp):
GACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGCGTGCGAGCGCTCAGCGACCG
GAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCCTACGTGCTATCGATCCTGCTGCC
ATAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATACTTA
Found at i:34249393 original size:13 final size:13
Alignment explanation
Indices: 34249375--34249400 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
34249365 AGCGCTCAGT
34249375 CGACCGGAGAGGC
1 CGACCGGAGAGGC
34249388 CGACCGGAGAGGC
1 CGACCGGAGAGGC
34249401 ATAATGCACA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.31, G:0.46, T:0.00
Consensus pattern (13 bp):
CGACCGGAGAGGC
Found at i:34249765 original size:552 final size:552
Alignment explanation
Indices: 34248908--34249925 Score: 1366
Period size: 552 Copynumber: 1.8 Consensus size: 552
34248898 TACGTACTGT
* * * * *
34248908 CGGTCCCGCTGCCACAACCCTTGGTCCGGCTAGGGCTTCGACATGGAATGAACTCCCTATGCCTA
1 CGGTCCCGCTGCCACAACCCTCGATCCAGCTAGGGCTTAGACATCGAATGAACTCCCTATGCCTA
* * * * * *
34248973 GGCCAACCCACGAAACGGACGTACGGGTGCTCAGCCGATCGGAGAGGTAGAATGTGTAAGCCGGG
66 AGCCAACCAACGAAACGGACGTACGGGCGCTCAGCCGATCGGAGAGGTAGAATGCGCAAGCCAGG
* * * * ** *
34249038 GATCGACCCGATCCCTCTTACGTGCTATCGATCCTGTTGCCGTAACCCTCGGTCCAGTTCGATCT
131 GATCGACCCGATCCCCCCTACATGCTATCGATCCTGCTGCCACAACCCTCGGTCCAGTCCGATCT
* * * * *
34249103 TAGACTGGGAATTAACTCTGTATACTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCCC
196 TAGACTAGGAATGAACTCCGTATACTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAC
* * * * *
34249168 GAAATGAGCGTGCAGGCGCTTAGCTGGCCAGAGAGGCAGAATGCGCAAGCCAG-GGATCCGCCCG
261 AAAACGAGCATGCAGGCGCTTAGCTGGCCAGAGAGGCAAAATGCGCAAG-CAGAGGATCCGCCCA
** * * *
34249232 ATCCCCCCTACGTGCTGTCGATCCTGCTGCCATAACCCT-GGTTC-GATCCGATCTTAGATTGGG
325 ATCCCCCCTACGTGCTACCGATCCTGCTGCCACAACCCTCGGTCCAG-TCCGATCTTAGACTGGG
* ** *
34249295 AATGAACTCCGTATGCTTAGACTAGGGATGATGTCCGTATGCCTAAGTCAACCCACGAAACGTGC
389 AATGAACTCCGTATACTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
34249360 GTGCGAGCGCTCAGTCGACCGGAGAGGCCGACCGGAGAGGCATAATGCACAAGCCGAGGATCAGC
454 GTGCGAGCGCTCAGTCGACCGGAGAGGCCGACCGGAGAGGCATAATGCACAAGCCGAGGATCAGC
34249425 CCGATCTCCGTCTGCGTGCTGCCAATCCCGCTAC
519 CCGATCTCCGTCTGCGTGCTGCCAATCCCGCTAC
* * * *
34249459 CGGTCCTGTTGCCACAACCCTCGATCCAGCT-GGAGCTTAGACATCGAATGAACTTCGTATGCCT
1 CGGTCCCGCTGCCACAACCCTCGATCCAGCTAGG-GCTTAGACATCGAATGAACTCCCTATGCCT
* *
34249523 AAGCCAACCAACGAAA-TGAGCGTGCGGGCGCTCAGCCGATCGGAGAGGTAGAATGCGCAAGCCA
65 AAGCCAACCAACGAAACGGA-CGTACGGGCGCTCAGCCGATCGGAGAGGTAGAATGCGCAAGCCA
* * * *
34249587 GGGATCGGCCCGGTCTCCCCCTGCATGCTGTCGATCCTGCTGCCACAACCCTCGGTCC-GATCCG
129 GGGATCGACCCGATC-CCCCCTACATGCTATCGATCCTGCTGCCACAACCCTCGGTCCAG-TCCG
* *
34249651 ATCTTAGATTAGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
192 ATCTTAGACTAGGAATGAACTCCGTATACTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * *
34249716 CCACAAAACGAGCATGCGGGCGCTTAG-TCGGTCGGAGAGGCAAAATGCGCAAGTAGAGGATCGG
257 CCACAAAACGAGCATGCAGGCGCTTAGCT-GGCCAGAGAGGCAAAATGCGCAAGCAGAGGATCCG
* * *
34249780 CCCAATCCCCCCTACGTGCTACCGATCCTGTTGTCGCAACCCTCGGTCCAGTCCGATCTTAGACT
321 CCCAATCCCCCCTACGTGCTACCGATCCTGCTGCCACAACCCTCGGTCCAGTCCGATCTTAGACT
* * * *
34249845 GGGAATGAACTGCGTATACTTAGACTGGGGATGAACTGCGTATGCCTAAGTGAACCCACGAAACG
386 GGGAATGAACTCCGTATACTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
*
34249910 AGCGTGCGGGCGCTCA
451 AGCGTGCGAGCGCTCA
34249926 ACCGACTAAG
Statistics
Matches: 397, Mismatches: 62, Indels: 14
0.84 0.13 0.03
Matches are distributed among these distances:
550 4 0.01
551 122 0.31
552 181 0.46
553 89 0.22
554 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (552 bp):
CGGTCCCGCTGCCACAACCCTCGATCCAGCTAGGGCTTAGACATCGAATGAACTCCCTATGCCTA
AGCCAACCAACGAAACGGACGTACGGGCGCTCAGCCGATCGGAGAGGTAGAATGCGCAAGCCAGG
GATCGACCCGATCCCCCCTACATGCTATCGATCCTGCTGCCACAACCCTCGGTCCAGTCCGATCT
TAGACTAGGAATGAACTCCGTATACTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAC
AAAACGAGCATGCAGGCGCTTAGCTGGCCAGAGAGGCAAAATGCGCAAGCAGAGGATCCGCCCAA
TCCCCCCTACGTGCTACCGATCCTGCTGCCACAACCCTCGGTCCAGTCCGATCTTAGACTGGGAA
TGAACTCCGTATACTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
GCGAGCGCTCAGTCGACCGGAGAGGCCGACCGGAGAGGCATAATGCACAAGCCGAGGATCAGCCC
GATCTCCGTCTGCGTGCTGCCAATCCCGCTAC
Found at i:34249873 original size:26 final size:26
Alignment explanation
Indices: 34249837--34249887 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
34249827 CCAGTCCGAT
34249837 CTTAGACTGGGAATGAACTGCGTATA
1 CTTAGACTGGGAATGAACTGCGTATA
*
34249863 CTTAGACTGGGGATGAACTGCGTAT
1 CTTAGACTGGGAATGAACTGCGTAT
34249888 GCCTAAGTGA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTGCGTATA
Found at i:34251099 original size:26 final size:26
Alignment explanation
Indices: 34251061--34251113 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34251051 CCGGTTCGAT
34251061 CTTAGATTAGGAATGAACTCCATATG
1 CTTAGATTAGGAATGAACTCCATATG
*
34251087 CTTAGA-TATGGAATGAACTCCGTATG
1 CTTAGATTA-GGAATGAACTCCATATG
34251113 C
1 C
34251114 CTAAACCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 2 0.08
26 23 0.92
ACGTcount: A:0.32, C:0.17, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTAGATTAGGAATGAACTCCATATG
Found at i:34252333 original size:26 final size:26
Alignment explanation
Indices: 34252295--34252347 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34252285 GGCTCAAAAT
*
34252295 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
34252321 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
34252347 C
1 C
34252348 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34252614 original size:26 final size:26
Alignment explanation
Indices: 34252578--34252630 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
34252568 CTGGTCTGAT
*
34252578 CTTAAACTAGGAATGAACTGCATATG
1 CTTAAACTAGGAATGAACTCCATATG
* *
34252604 CTTAGACTAGGGATGAACTCCATATG
1 CTTAAACTAGGAATGAACTCCATATG
34252630 C
1 C
34252631 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAAACTAGGAATGAACTCCATATG
Found at i:34253835 original size:26 final size:26
Alignment explanation
Indices: 34253797--34253852 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
34253787 CCAGTCTGAT
*
34253797 CTTAGACTAGGAATGAACTTCATATG
1 CTTAGACTAGGAATGAACTCCATATG
*
34253823 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCATATG
34253849 CTTA
1 CTTA
34253853 AGGCAACCCA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
25 1 0.04
26 26 0.96
ACGTcount: A:0.32, C:0.18, G:0.20, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:34254567 original size:26 final size:26
Alignment explanation
Indices: 34254529--34254581 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
34254519 GGCTCAAAAT
34254529 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
34254555 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
34254581 C
1 C
34254582 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34255005 original size:158 final size:159
Alignment explanation
Indices: 34254554--34255014 Score: 446
Period size: 158 Copynumber: 2.9 Consensus size: 159
34254544 AACTCCGTAT
* * *
34254554 GCTTAGACATGGAATGAACTC-CGTATGCCTAAGCCAACCCACGAAACGAGCATGTAGGCGCTCA
1 GCTTAGACATGGAATGAACTCTCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGCGCTCA
* * * * * * ** * * * *
34254618 ACTGGTTGAAGAGGTAGAAAGCGCAAGCCATGGATTGACGTGGTCCCCCCCGCGCGCTGTCGATC
66 GCCGGTCGAAGAGGTAGAATGCGCAAGCCAGGGATCGACCCGGTCCCCTCTGCGTGCTGCCGATC
* * *
34254683 CTGCTGCCACAACCCTCGGTCTGATTCGA
131 CTGCTGCCACAACCCTCAGCCCGATTCGA
* * * * * * * *
34254712 TCTTTGAC-TGGGAATGAACT-TCGTATGCATAAGTCAACCTAGGAAATGAG-GTGCGGGCGCTG
1 GCTTAGACAT-GGAATGAACTCTCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGCGCTC
* * * * ** * *
34254774 AGCCGGTCGAAGAGGCATAATGCGCAAGCCAGGGATCGGCCCGATCCTCCTCTATGTGCTACCGG
65 AGCCGGTCGAAGAGGTAGAATGCGCAAGCCAGGGATCGACCCGGTCC-CCTCTGCGTGCTGCCGA
* * * *
34254839 TCCCGCTGCCACAACCCTCAGCCCGGTTGGG
129 TCCTGCTGCCACAACCCTCAGCCCGATTCGA
* * *
34254870 GCTTAAACATTGAATGAACTCTC-TATGCCTAAGCCAACCCACGAAATGGGCGTGCAGGCGCTCA
1 GCTTAGACATGGAATGAACTCTCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGCGCTCA
* * * *
34254934 GCCGGTCGGAGAGGTAGAATGCGCAAGCCGGGGATCAACCCGGTCCCCTCTGCATGCTGCCGATC
66 GCCGGTCGAAGAGGTAGAATGCGCAAGCCAGGGATCGACCCGGTCCCCTCTGCGTGCTGCCGATC
**
34254999 CTGCTGCTGCAACCCT
131 CTGCTGCCACAACCCT
34255015 TGGTTCAATC
Statistics
Matches: 233, Mismatches: 64, Indels: 12
0.75 0.21 0.04
Matches are distributed among these distances:
157 44 0.19
158 136 0.58
159 53 0.23
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCTCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGCGCTCA
GCCGGTCGAAGAGGTAGAATGCGCAAGCCAGGGATCGACCCGGTCCCCTCTGCGTGCTGCCGATC
CTGCTGCCACAACCCTCAGCCCGATTCGA
Found at i:34255081 original size:26 final size:26
Alignment explanation
Indices: 34255030--34255081 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
34255020 CAATCCGATG
*
34255030 TTAGACTGGGAATGAACTCTGTATGC
1 TTAGACTGGGAATGAACTCTGCATGC
* *
34255056 TTAGATTGGGGATGAACT-TCGCATGC
1 TTAGACTGGGAATGAACTCT-GCATGC
34255082 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
25 1 0.05
26 21 0.95
ACGTcount: A:0.25, C:0.15, G:0.29, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCTGCATGC
Found at i:34256127 original size:159 final size:159
Alignment explanation
Indices: 34255771--34256133 Score: 373
Period size: 158 Copynumber: 2.3 Consensus size: 159
34255761 AACTCCATAT
* *
34255771 GCTTAGACATGGAATGAACTCCGTAGGCCTAAGCCAACCCACG-AACTGAGCATACGGGCACTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACTGAGCATACGAGCACTCA
* * * * * *
34255835 ACCGACCGGAGAGGCAGAATGTGCAAGTCAGGGATCGACTCGATCCCCCCTGCGTGCTGTTGATC
66 ACCGACCGAAAAGGCAGAATGCGCAAGTCAGGGATCGACCCGATCCCCCCTCCGTGCTGCTGATC
* *
34255900 CTGCTACCGCAACCCTCGGTCCGATCTGA
131 CTGCTACCGCAACCCTCAGTCCGAGCTGA
* * * * * * * *
34255929 TCTTAGA-TTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAAC-GAGCGTGCGAGCGCTG
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACTGAGCATACGAGCACTC
* * * *
34255992 AACCGATCGAAAAGGCATAATGCGCAAGTCGGGGATC-AGCCCGATCCCCCTTTCCGTGCTGCTG
65 AACCGACCGAAAAGGCAGAATGCGCAAGTCAGGGATCGA-CCCGATCCCCC-CTCCGTGCTGCTG
* * *
34256056 GT-C-GC-ACTGCGACAACCCTCAGT-CTAGCTGGG
128 ATCCTGCTAC--CG-CAACCCTCAGTCCGAGCT-GA
*
34256088 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA
34256134 TGGAAGTGTG
Statistics
Matches: 166, Mismatches: 30, Indels: 17
0.78 0.14 0.08
Matches are distributed among these distances:
156 2 0.01
157 4 0.02
158 95 0.57
159 64 0.39
160 1 0.01
ACGTcount: A:0.26, C:0.30, G:0.25, T:0.18
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACTGAGCATACGAGCACTCA
ACCGACCGAAAAGGCAGAATGCGCAAGTCAGGGATCGACCCGATCCCCCCTCCGTGCTGCTGATC
CTGCTACCGCAACCCTCAGTCCGAGCTGA
Found at i:34256287 original size:26 final size:26
Alignment explanation
Indices: 34256246--34256298 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
34256236 TACGATCGAT
34256246 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
34256272 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
34256298 C
1 C
34256299 ATAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34263782 original size:26 final size:26
Alignment explanation
Indices: 34263731--34263783 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
34263721 TCGATCTGAT
*
34263731 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
* * *
34263757 CTTAGACTGGGGATGAATTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
34263783 C
1 C
34263784 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:34264488 original size:26 final size:26
Alignment explanation
Indices: 34264449--34264498 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
34264439 TGGCTCAAAC
34264449 TCTTAGACTAGGAATGAACTCCGTGA
1 TCTTAGACTAGGAATGAACTCCGTGA
34264475 TCTTAGAC-ATGGAATGAACTCCGT
1 TCTTAGACTA-GGAATGAACTCCGT
34264499 ATGCGTAAGC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (26 bp):
TCTTAGACTAGGAATGAACTCCGTGA
Found at i:34264798 original size:158 final size:158
Alignment explanation
Indices: 34264472--34264976 Score: 398
Period size: 158 Copynumber: 3.2 Consensus size: 158
34264462 ATGAACTCCG
* *
34264472 TGATCTTAGACATGGAATGAACTCCGTATGCGTAAGCTGACCCACGAAACGAGCGTGCGGACACT
1 TGATCTTAGACATGGAATGAACTCCGTATGCATAAGCTAACCCACGAAACGAGCGTGCGGACACT
* * * *
34264537 CAGCCAGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCTGGTCCCCCCTGCGTGCTGTCGA
66 CAGCCAGCCGAAAAGGCAGAATGCGCAAACCGGGGATCAGCCCGGTCCCCCCTGCGTGCTGTCGA
** * ** *
34264602 TCTTGTTGCTGCAACCCTTGGTCCGGTC
131 TCCCGCTGCCACAACCCTCGGTCCGGTC
* *
34264630 TGATCGTAGAC-TGGGAATGAACTCCGTATGCATAAG-TCAACCCACGAAACGAGCGTGCGGGCA
1 TGATCTTAGACAT-GGAATGAACTCCGTATGCATAAGCT-AACCCACGAAACGAGCGTGCGGACA
* * * * * *
34264693 CTGAGTC-GACCGAAAATGCATAATGCGTAAACCGGGGATC-GACCCGGTCCCCTTCTGCGTGCT
64 CTCAGCCAG-CCGAAAAGGCAGAATGCGCAAACCGGGGATCAG-CCCGGTCCCC-CCTGCGTGCT
* *
34264756 GTCGGTCCCGCTGCCACAACCCTCGGT-CTG-C
126 GTCGATCCCGCTGCCACAACCCTCGGTCCGGTC
* * * * ** * * * *
34264787 T-AGTGCTTAGACATGGAATGAACTCCCTATGCCTATGCCAACAAACGAAATGGGCGTGCGGGCG
1 TGA-T-CTTAGACATGGAATGAACTCCGTATGCATAAGCTAACCCACGAAACGAGCGTGCGGACA
* * * * * * * * * **
34264851 CTCAGTCGGCC-AGAGAGGTAGAATGCGTAAGCTGGGGATCGGCCCGGTCCCCCCTACGTGCTAC
64 CTCAGCCAGCCGA-AAAGGCAGAATGCGCAAACCGGGGATCAGCCCGGTCCCCCCTGCGTGCTGT
** * ** * *
34264915 CGATCCTACTGTCGTAACCCTCGATCCAGTC
128 CGATCCCGCTGCCACAACCCTCGGTCCGGTC
* *
34264946 TGATCTAAGAC-TGGGAATGAACTCCATATGC
1 TGATCTTAGACAT-GGAATGAACTCCGTATGC
34264977 TTAGACTGGG
Statistics
Matches: 278, Mismatches: 53, Indels: 32
0.77 0.15 0.09
Matches are distributed among these distances:
156 1 0.00
157 35 0.13
158 206 0.74
159 35 0.13
160 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (158 bp):
TGATCTTAGACATGGAATGAACTCCGTATGCATAAGCTAACCCACGAAACGAGCGTGCGGACACT
CAGCCAGCCGAAAAGGCAGAATGCGCAAACCGGGGATCAGCCCGGTCCCCCCTGCGTGCTGTCGA
TCCCGCTGCCACAACCCTCGGTCCGGTC
Found at i:34265455 original size:368 final size:355
Alignment explanation
Indices: 34264791--34265455 Score: 748
Period size: 368 Copynumber: 1.8 Consensus size: 355
34264781 GTCTGCTAGT
* * * * *
34264791 GCTTAGACATGGAATGAACTCCCTATGCCTATGCCAACAAACGAAATGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCACTATGCCTAAGCCAACAAACGAAACGAGCATGCGGGCGCTCAG
***
34264856 TCGGCCAGAGAGGTAGAATGCGTAAGCTGGGGATCGGCCCGGTCCCCCCTACGTGCTACCGATCC
66 TCGGCCAGAGAGGTAGAATGCGTAAGCCAAGGATCGGCCCGGTCCCCCCTACGTGCTACCGATCC
* * *
34264921 TACTGTCGTAACCCTCGATCCAGTCTGATCTAAGACTGGGAATGAACTCCATATGCTTAGACTGG
131 TACTGTCGTAACCCTCAATCCAGTCTGATCTAAGACTGGGAATGAACTCCATACGCTTAGACTGC
* * * * *
34264986 GGATGAACTCGGTATGCCTATGTCATCCAATGAAACGAGCGTACAAGGGCTCAACCTGCCTGAGA
196 GAATGAACTCCGTATGCCTAAGCCAACCAATGAAACGAGCGTACAAGGGCTCAACCTGCCTGAGA
* * *
34265051 GGCATAATGCGCAAGCTGGGGATCAGCCCAATCCCCCTTTGCGTGCAGCGGATCCCGCTACCGGT
261 GGCAGAATGCACAAGCTGGGGACCAGCCCAATCCCCCTTTGCGTGCAGCGGATCCCGCTACCGGT
34265116 CCTGCTACCACAACCTTTGGTCCGACTGGG
326 CCTGCTACCACAACCTTTGGTCCGACTGGG
* * ** * *
34265146 GCTTAGACATGGAATGAACTCAGTATGCCTAAGCCCACCCATGAAACGAGCATGTGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCACTATGCCTAAGCCAACAAACGAAACGAGCATGCGGGCGCTCAG
* * ** **
34265211 TCGGCTAGAGAGGTAGAATGCGTAAGCCAAGGATCGGCCTGGTCCCTCCCTGTGTGCTGTCGATC
66 TCGGCCAGAGAGGTAGAATGCGTAAGCCAAGGATCGGCCCGGTCCC-CCCTACGTGCTACCGATC
* * *
34265276 CTGTTACTGGTACTACTACCGTAACCCTCAATTCAGTCTGATCTTAGA-TCGGGAATGAACTCCG
130 C---TACT-G------T--CGTAACCCTCAATCCAGTCTGATCTAAGACT-GGGAATGAACTCCA
* * * *
34265340 TACGCTTAGACAT-CGAATGAACTCCGTATGCCTAAGCCAACCCATTAAATGAGCGTAC-GGGCG
182 TACGCTTAGAC-TGCGAATGAACTCCGTATGCCTAAGCCAACCAATGAAACGAGCGTACAAGG-G
* * *
34265403 CTCAGCC-GGCTGGAGAGGCAGAATGCACAAG-TCGGGGACC-GACCCGATCCCCC
245 CTCAACCTGCCT-GAGAGGCAGAATGCACAAGCT-GGGGACCAG-CCCAATCCCCC
34265456 CTGTGTCCTG
Statistics
Matches: 250, Mismatches: 41, Indels: 25
0.79 0.13 0.08
Matches are distributed among these distances:
355 95 0.38
356 15 0.06
359 4 0.02
360 1 0.00
366 1 0.00
367 8 0.03
368 125 0.50
369 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.21
Consensus pattern (355 bp):
GCTTAGACATGGAATGAACTCACTATGCCTAAGCCAACAAACGAAACGAGCATGCGGGCGCTCAG
TCGGCCAGAGAGGTAGAATGCGTAAGCCAAGGATCGGCCCGGTCCCCCCTACGTGCTACCGATCC
TACTGTCGTAACCCTCAATCCAGTCTGATCTAAGACTGGGAATGAACTCCATACGCTTAGACTGC
GAATGAACTCCGTATGCCTAAGCCAACCAATGAAACGAGCGTACAAGGGCTCAACCTGCCTGAGA
GGCAGAATGCACAAGCTGGGGACCAGCCCAATCCCCCTTTGCGTGCAGCGGATCCCGCTACCGGT
CCTGCTACCACAACCTTTGGTCCGACTGGG
Found at i:34265691 original size:159 final size:158
Alignment explanation
Indices: 34265343--34265742 Score: 403
Period size: 159 Copynumber: 2.5 Consensus size: 158
34265333 AACTCCGTAC
* ** * *
34265343 GCTTAGACATCGAATGAACTCCGTATGCCTAAGCCAACCCATTAAATGAGCGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * ** *
34265408 CCGGCTGGAGAGGCAGAATGCACAAGTCGGGGACCGACCCGATCCCCCCTGTGTCCTGTCTATCC
66 CCGGCTGGAGAGGCAGAACGCACAAGTCAGGGACCAACCCGATCCCCCCTGCGTCCTACCGATCC
* **
34265473 TACTGCTGCAACCCTCGATCCAGTCTGA
131 TACTACCACAACCCTCGATCCAGTCTGA
* * *
34265501 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * * *
34265565 GCCGGCTGGAGAGGCATAACGCGCAAG-CTAGGGATCAACCTGGTCCACCTCTGCGTGCTACCGA
65 GCCGGCTGGAGAGGCAGAACGCACAAGTC-AGGGACCAACCCGATCC-CCCCTGCGTCCTACCGA
* * * *
34265629 TCCTGCTACCACAACCCTTGGTCCAG-CTGGG
128 TCCTACTACCACAACCCTCGATCCAGTCT-GA
* * * *
34265660 GCTTAGACATGGAATGAACTCCCTATGCCTAAACCAACCCACGGAAC-AGCCTTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAG-CGTGCGGGCGCTCA
* **
34265724 GCCGACCAGAGAGGCAGAA
65 GCCGGCTGGAGAGGCAGAA
34265743 TGTGCAAGCC
Statistics
Matches: 196, Mismatches: 40, Indels: 11
0.79 0.16 0.04
Matches are distributed among these distances:
157 2 0.01
158 94 0.48
159 99 0.51
160 1 0.01
ACGTcount: A:0.24, C:0.32, G:0.26, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGGCTGGAGAGGCAGAACGCACAAGTCAGGGACCAACCCGATCCCCCCTGCGTCCTACCGATCC
TACTACCACAACCCTCGATCCAGTCTGA
Found at i:34265870 original size:26 final size:26
Alignment explanation
Indices: 34265819--34265871 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
34265809 CTGATCCGAT
**
34265819 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
34265845 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
34265871 C
1 C
34265872 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:34266580 original size:26 final size:26
Alignment explanation
Indices: 34266542--34266594 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34266532 GGCTCAAACT
*
34266542 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
34266568 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
34266594 C
1 C
34266595 CTAAGCTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:34266901 original size:26 final size:26
Alignment explanation
Indices: 34266872--34266924 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34266862 CTTGTCCGAT
34266872 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
34266898 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
34266924 C
1 C
34266925 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34273201 original size:26 final size:26
Alignment explanation
Indices: 34273163--34273241 Score: 133
Period size: 26 Copynumber: 3.0 Consensus size: 26
34273153 CCAGTTCAAT
34273163 CTTAGAC-TAGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
34273189 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
*
34273215 CTTAGCCATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
34273241 C
1 C
34273242 CTAAGCCAAC
Statistics
Matches: 51, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
26 50 0.98
27 1 0.02
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.27
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:34273378 original size:211 final size:211
Alignment explanation
Indices: 34273005--34273392 Score: 505
Period size: 211 Copynumber: 1.8 Consensus size: 211
34272995 CGGCTGGGGT
* * *
34273005 TTAGGCATGGAATGAATGCCGTATGCCAAAGCCAACCCACGAAATGAGTGTGCGGGCAGTCAACC
1 TTAGCCATGGAATGAATGCCGTATGCCAAAGCCAACCCACGAAACGAGCGTGCGGGCAGTCAACC
* * * ** *
34273070 AGCCGGAGAGGTAGAATGCGCAAGCCGAGGATCGGCCTGGTCCCCCCCTGCGTGCGGTCGATCCT
66 AGCCGGAGAGGTAGAATACACAAGCCGAGGACCGGCCCAGTCCCCCCCTGCGCGCGGTCGATCCT
*
34273135 GCTACCGTAACCCTCGGTCCAGTTCAATCTTAGACTAGGAATGAACTCCGTATGCTTAGACATGG
131 GCTACCGTAACCCTCGGTCCAGTCCAATCTTAGACTAGGAATGAACTCCGTATGCTTAGACATGG
34273200 AATGAACTCCGTATGC
196 AATGAACTCCGTATGC
* *
34273216 TTAGCCATGGAATGAACT-CCGTATGCCTAAGCCAACCCACGAAACGAGCGTTGTGGGC-GCTCA
1 TTAGCCATGGAATGAA-TGCCGTATGCCAAAGCCAACCCACGAAACGAGCG-TGCGGGCAG-TCA
* * * * * *
34273279 GCTAGCTGGGGAGGTAGAATACACAAGCC-AGGGACCGGCCCAGT-CCCCCCTGCGCGCTGTTGA
63 ACCAGCCGGAGAGGTAGAATACACAAGCCGA-GGACCGGCCCAGTCCCCCCCTGCGCGCGGTCGA
* ** * *
34273342 TCCTGCTGCCGTAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACT
127 TCCTGCTACCGTAACCCTCGGTCCAGTCCAATCTTAGACTAGGAATGAACT
34273393 TTGTATGCCT
Statistics
Matches: 150, Mismatches: 23, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
211 107 0.71
212 43 0.29
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.20
Consensus pattern (211 bp):
TTAGCCATGGAATGAATGCCGTATGCCAAAGCCAACCCACGAAACGAGCGTGCGGGCAGTCAACC
AGCCGGAGAGGTAGAATACACAAGCCGAGGACCGGCCCAGTCCCCCCCTGCGCGCGGTCGATCCT
GCTACCGTAACCCTCGGTCCAGTCCAATCTTAGACTAGGAATGAACTCCGTATGCTTAGACATGG
AATGAACTCCGTATGC
Found at i:34273517 original size:159 final size:157
Alignment explanation
Indices: 34273354--34273651 Score: 350
Period size: 159 Copynumber: 1.9 Consensus size: 157
34273344 CTGCTGCCGT
* * *** *
34273354 AACCCTCGGTCTGG-TCCGATCTTAGAC-TGGGAATGAACTTTGTATGCCTAAGTTAACCCACGA
1 AACCCTCCGTCTGGCT-CGAGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGTCAACCCAC-A
* * * * * ***
34273417 -AACGAGCGTACGGGTGCTGAGTCGATCGGAGAGGCATAATGCGCAAGCTGGGGATCGGTCCGAT
63 TAACGAGCGTACGGGCG-TGAGCCGATCGGAGAGGCAGAATGCGCAAGCCGAGGATCAACCCGAT
34273481 CCCCCTCTACGTGCTGCCGATCTCGCTGCCAC
127 CCCCCT-TACGTGCTGCCGATCTCGCTGCCAC
* *
34273513 AACCCTCCGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGTCAACCCACATAA
1 AACCCTCCGTCTGGCTCGAGCTTAGACATGGAATGAACTCCCTATGCCTAAGTCAACCCACATAA
* * * *
34273578 CGGGCGTGCGGGCGTTAGCCGATCGGAGAGGTAGAATGCGCAAGCCGAGGATCAACCCGATCCCC
66 CGAGCGTACGGGCGTGAGCCGATCGGAGAGGCAGAATGCGCAAGCCGAGGATCAACCCGATCCCC
34273643 CTTACGTGC
131 CTTACGTGC
34273652 CGTCGATCCT
Statistics
Matches: 116, Mismatches: 20, Indels: 8
0.81 0.14 0.06
Matches are distributed among these distances:
157 7 0.06
158 45 0.39
159 62 0.53
160 2 0.02
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.20
Consensus pattern (157 bp):
AACCCTCCGTCTGGCTCGAGCTTAGACATGGAATGAACTCCCTATGCCTAAGTCAACCCACATAA
CGAGCGTACGGGCGTGAGCCGATCGGAGAGGCAGAATGCGCAAGCCGAGGATCAACCCGATCCCC
CTTACGTGCTGCCGATCTCGCTGCCAC
Found at i:34273719 original size:26 final size:26
Alignment explanation
Indices: 34273690--34273742 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
34273680 TCGGTCTGAT
* *
34273690 CTTAGATTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
34273716 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
34273742 C
1 C
34273743 CTAAATCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:34274775 original size:26 final size:26
Alignment explanation
Indices: 34274734--34274786 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
34274724 CTGATTCGAT
34274734 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
34274760 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
34274786 C
1 C
34274787 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34275139 original size:26 final size:26
Alignment explanation
Indices: 34275110--34275161 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34275100 TCTGATCCGA
34275110 TCTTAGAC-TGGGAATGAACTCTGTAT
1 TCTTAGACAT-GGAATGAACTCTGTAT
34275136 TCTTAGACATGGAATGAACTCTGTAT
1 TCTTAGACATGGAATGAACTCTGTAT
34275162 GCCTAAGCCA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.15, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTTAGACATGGAATGAACTCTGTAT
Found at i:34276030 original size:501 final size:499
Alignment explanation
Indices: 34275115--34276084 Score: 1065
Period size: 501 Copynumber: 1.9 Consensus size: 499
34275105 TCCGATCTTA
* ** * * *
34275115 GACTGGGAATGAACTCTGTATTCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGA
1 GACTAGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGA
* *** * * * * *
34275180 AACGAGTGTGCGGGCGCTTAACCGATCGGAGGGCAGAATGCACAAACCGGGGACTGGCCCAGTCC
66 AACGAGCGTGCAAACGCTCAACCAACCGGAGGGCAGAATGCACAAACCGAGGACTGACCCAGTCC
* * *
34275245 CCCCTGCGTGCTATCGATCCTGCTACCGCAACCCTCATTCCAATCCGATCTTAGGCTGGAAATGA
131 CCCCTGCGTACTATCGATCCTGCTACCGCAACCCTCAGTCCAATCCGATCTTAGACTGGAAATGA
* * * ** *
34275310 ACTCCGTATGCCTAAGTCAACCCATGAAAGTAGCGTACGGGCATTGAGCCAGCTAGAGAGGCATA
196 ACTCCATATGCATAAGTCAACCCACGAAACAAGCGTACGGGCA-TGAGCCAGCGAGAGAGGCAT-
* * * * * *
34275375 ATGTGCAAGCCGGGGATTGACCCGATCCCCCTCTGGGTGCTGTCGGTCCCGCTGCCACAACCCTC
259 ATGCGCAAGCCAGGGATTGACCCGATCCCCCACTGCGTGCTGACGGTCCCGCTACCACAACCCTC
** * * * *
34275440 AGACTGGCTGGGGGTTAGACATGTAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGT
324 AGACCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGT
** ** * * * *
34275505 GCGAGCTCTCAGTCGGTAGGAGAGGCAGAATGCGCATGTC-AGAGATCAACCCGGTCCCCCTCTG
389 GCGAGAACTCAACCGCTAGGAGAGGCAGAATGCGCAAGTCGAG-GATCAACCCGATCCCCC-CTA
*
34275569 CGTGCTATCGATCCTGCTACTGGTCCTACTGCTGCAACACTAGGTCCG
452 CGTGCTACCGATCCTGCTACTGGTCCTACTGCTGCAACACTAGGTCCG
*
34275617 GACTAGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGG
1 GACTAGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGA
* * * **
34275682 AATGAGCGTGCAAACGGTCAGCCAACCGGAGAGGCAGAATGCACAAACCGAGGA-TCGACCTGGT
66 AACGAGCGTGCAAACGCTCAACCAACCGGAG-GGCAGAATGCACAAACCGAGGACT-GACCCAGT
* * * * * * * ** * * *
34275746 CCGCCTTGCGTACTGTCGATCTTGCTGCCGCAACCTTCGGTCCGGTTCTATCTTAGACTGGGAAT
129 CCCCCCTGCGTACTATCGATCCTGCTACCGCAACCCTCAGTCCAATCCGATCTTAGACTGGAAAT
* * *
34275811 GAACTCCATATGCATAAGTCAACCCACGAAACAAGCGTACGAAGGC-TGAGTCGGCCGA-AGGGG
194 GAACTCCATATGCATAAGTCAACCCACGAAACAAGCGTACG--GGCATGAGCCAG-CGAGAGAGG
* * *
34275874 CAT-TGCGCAAGCCAGGGATTGACCCGGTCCCCCACTGCGTGCT-ACAGGTCTCGCTACCATAAC
256 CATATGCGCAAGCCAGGGATTGACCCGATCCCCCACTGCGTGCTGAC-GGTCCCGCTACCACAAC
* * * *
34275937 CCTCTGTCCAGTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCTAACCCACGAAACGT
320 CCTCAGACCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACG-
* * * * **
34276002 A-CGTTCGGGAACTCAACCGACT-GGAGAGGTAGAATGCGTAAGTCGAGGATCGGCCCGATCCCC
384 AGCGTGCGAGAACTCAACCG-CTAGGAGAGGCAGAATGCGCAAGTCGAGGATCAACCCGATCCCC
34276065 CCTACGTGCTACCGATCCTG
448 CCTACGTGCTACCGATCCTG
34276085 TTGCCACAAC
Statistics
Matches: 380, Mismatches: 79, Indels: 20
0.79 0.16 0.04
Matches are distributed among these distances:
500 18 0.05
501 148 0.39
502 84 0.22
503 125 0.33
504 2 0.01
505 3 0.01
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (499 bp):
GACTAGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGA
AACGAGCGTGCAAACGCTCAACCAACCGGAGGGCAGAATGCACAAACCGAGGACTGACCCAGTCC
CCCCTGCGTACTATCGATCCTGCTACCGCAACCCTCAGTCCAATCCGATCTTAGACTGGAAATGA
ACTCCATATGCATAAGTCAACCCACGAAACAAGCGTACGGGCATGAGCCAGCGAGAGAGGCATAT
GCGCAAGCCAGGGATTGACCCGATCCCCCACTGCGTGCTGACGGTCCCGCTACCACAACCCTCAG
ACCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGC
GAGAACTCAACCGCTAGGAGAGGCAGAATGCGCAAGTCGAGGATCAACCCGATCCCCCCTACGTG
CTACCGATCCTGCTACTGGTCCTACTGCTGCAACACTAGGTCCG
Found at i:34276141 original size:26 final size:26
Alignment explanation
Indices: 34276112--34276164 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
34276102 CCGGTCCAAT
34276112 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
34276138 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
34276164 C
1 C
34276165 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34276225 original size:13 final size:13
Alignment explanation
Indices: 34276207--34276233 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
34276197 CTCAGCCAAT
34276207 CGGAGAGGTCCGC
1 CGGAGAGGTCCGC
34276220 CGGAGAGGTCCGC
1 CGGAGAGGTCCGC
34276233 C
1 C
34276234 CGCCAGAGAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.33, G:0.44, T:0.07
Consensus pattern (13 bp):
CGGAGAGGTCCGC
Found at i:34277041 original size:26 final size:26
Alignment explanation
Indices: 34277012--34277064 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
34277002 CCAGTCCGAT
34277012 CTTAGACTA-GGAATGAACTCCATATG
1 CTTAGACTATGG-ATGAACTCCATATG
* *
34277038 CTTAGACTATGGATGAATTCCGTATG
1 CTTAGACTATGGATGAACTCCATATG
34277064 C
1 C
34277065 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTAGACTATGGATGAACTCCATATG
Found at i:34277407 original size:26 final size:26
Alignment explanation
Indices: 34277378--34277430 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34277368 CCGGTTTGAT
34277378 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
34277404 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
34277430 C
1 C
34277431 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:34277480 original size:366 final size:344
Alignment explanation
Indices: 34276704--34277489 Score: 857
Period size: 354 Copynumber: 2.2 Consensus size: 344
34276694 TCATAGATTG
* * * * * *
34276704 GGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGCGTGGG-AGCTGAGTCGGTCGAA
1 GGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCA-CTCAGTCGGTCGGA
* * * * **
34276768 GAGGCATAATGCGTAAGTCAGGGATCGGCCTGATCCCTCTCTGGGTGCTGCCGGTCCCGCTATGA
65 GAGGCATAATGCGCAAGTCAAGGATCAGCCCGATCCCTCTCTGGGTGCTGCCGGTCCCGCTACCA
* * *
34276833 CAACCCTCAATCCAGCTTGGGCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACGAA
130 CAACCCTCAATCCAGCTGGGGCTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCCACGAA
* * * * * *
34276898 ACGAGCGTACGGGCGCTCAGCCGACCGAAGAGGTAGAATGTGCAAGCCGAGGATCGGCCCGATCC
195 ACGAGCGTACAGGCGCTCAACCGACCGAAGAGGGAGAATGCGCAAGCCGAGGATCGACCAGATCC
* *
34276963 CTCCTGCGTGCTGTCGATCCTCCTATCGCAACCCTCGGTCCAGTCCGATCTTAGACTAGGAATGA
260 CCCCAGCGTGCTGTCGATCCTCCTATCGCAACCCTCGGTCCAGTCCGATCTTAGACTAGGAATGA
34277028 ACTCCATATGCTTAGACTAT
325 ACTCCATATGCTTAGACTAT
* * * *
34277048 GG-ATGAA-TTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCAGGCACTCGGTCGGTTGGA
1 GGAATGAACTT-CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGTCGGTCGGA
34277111 GAGGCATAATGCGCAAGTCAAGGATCAGCCCGATCCCCTCTGCGTGCTGTCGATCTCGCTGCCGG
65 GAGGCATAATGCGCAAGTCAAGGATCAGCCCGAT-CCCTCT-C-TG--G--G---T-GCTGCCGG
* * *
34277176 TCCTGCTGCCACAACCCTCAATCC-GACTGGGGCTTAGACATGGAATGAACTTCGTATACCTAAG
119 TCCCGCTACCACAACCCTCAATCCAG-CTGGGGCTTAGACATGGAATGAACTCCGTATACCTAAG
* * * * * *
34277240 CCAACCCATGAAATGAGCGTGCAGGCGCTCAACCGGCCGGAGAGGCGA-AATGCGTAAGCCGAGG
183 CCAACCCACGAAACGAGCGTACAGGCGCTCAACCGACCGAAGAGG-GAGAATGCGCAAGCCGAGG
*
34277304 TTCGACCAG-TCCACCCCAGCGTGCTGTCGATCTTGCTGCTGGTCCTACTGCCGCAACCCTCGGT
247 ATCGACCAGATCC-CCCCAGCGTGCTGTCGA---T-C--C---TCCTA-T--CGCAACCCTCGGT
* ** * *
34277368 CCGGTTTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC-AT
299 CCAGTCCGATCTTAGACTAGGAATGAACTCCATATGCTTAGACTAT
* * *
34277413 GGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCTCTCAGTCGATCGGAG
1 GGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGTCGGTCGGAG
*
34277478 AGGCAGAATGCG
66 AGGCATAATGCG
34277490 TAAGCCGGGG
Statistics
Matches: 362, Mismatches: 50, Indels: 38
0.80 0.11 0.08
Matches are distributed among these distances:
342 1 0.00
343 77 0.21
344 9 0.02
345 1 0.00
346 2 0.01
348 1 0.00
350 1 0.00
353 5 0.01
354 135 0.37
355 1 0.00
357 1 0.00
358 1 0.00
360 1 0.00
363 5 0.01
364 1 0.00
365 4 0.01
366 114 0.31
367 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (344 bp):
GGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGTCGGTCGGAG
AGGCATAATGCGCAAGTCAAGGATCAGCCCGATCCCTCTCTGGGTGCTGCCGGTCCCGCTACCAC
AACCCTCAATCCAGCTGGGGCTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCCACGAAA
CGAGCGTACAGGCGCTCAACCGACCGAAGAGGGAGAATGCGCAAGCCGAGGATCGACCAGATCCC
CCCAGCGTGCTGTCGATCCTCCTATCGCAACCCTCGGTCCAGTCCGATCTTAGACTAGGAATGAA
CTCCATATGCTTAGACTAT
Found at i:34277907 original size:26 final size:26
Alignment explanation
Indices: 34277878--34277956 Score: 124
Period size: 26 Copynumber: 3.0 Consensus size: 26
34277868 TCGATCCGAT
34277878 CTTAGACT-AGGAATGAACTCCGTATG
1 CTTAGACTGAGG-ATGAACTCCGTATG
* *
34277904 CTTAGATTGAGGATGAACTCCGTATA
1 CTTAGACTGAGGATGAACTCCGTATG
34277930 CTTAGACTGAGGATGAACTCCGTATG
1 CTTAGACTGAGGATGAACTCCGTATG
34277956 C
1 C
34277957 CTAAGTCAAC
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
26 45 0.94
27 3 0.06
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGGATGAACTCCGTATG
Found at i:34278578 original size:25 final size:26
Alignment explanation
Indices: 34278550--34278599 Score: 77
Period size: 25 Copynumber: 2.0 Consensus size: 26
34278540 GGCTTAAAAT
34278550 CTTAGAC-TGAGAATGAACT-CTTATG
1 CTTAGACATG-GAATGAACTCCTTATG
34278575 CTTAGACATGGAATGAACTCCTTAT
1 CTTAGACATGGAATGAACTCCTTAT
34278600 ACCTAAGCCA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
25 16 0.70
26 7 0.30
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCTTATG
Found at i:34279176 original size:184 final size:183
Alignment explanation
Indices: 34278863--34279213 Score: 429
Period size: 184 Copynumber: 1.9 Consensus size: 183
34278853 TTCGGCTAGG
* * * * * *
34278863 GCTTAGACATGGAATGAACTCCCTATGCCTAATCTAACCCATAAAATGGGTGTGCGGGCCCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATAAAACGAGCGTGCGGGCCCTCAA
* * * *
34278928 CCGGTCGGAGAGGCAGAATCTACAAGCCGGGGATCGACTCGGTCCCCCTTGCGTGCTGTCGATCC
66 CCGGCCAGAGAGGCAGAATCTA-AAGCCGGGGATCGACTCGGTCCCCCCTGCGTGCTATCGATCC
* * * * * *
34278993 TTCTGTCGTAACCCTCGGTCTGGTCCGATCTTAGACTGCAAATGAACTCCATAT
130 TACTATCGCAACCCTCAGTCTGATCCAATCTTAGACTGCAAATGAACTCCATAT
* * * **
34279047 GCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATAAAACGAGCGTGCGGGCCCTCA
* *
34279111 ACCGGCCAGAGAGGCAGAATGCGT-AAGCCGGGGATCGGC-CTGGTCCCCCCTGCGTGTTATCGA
65 ACCGGCCAGAGAGGCAGAAT-C-TAAAGCCGGGGATCGACTC-GGTCCCCCCTGCGTGCTATCGA
34279174 TCCTACTATCGCAACCCTCAGTCTGATCCAATCTTAGACT
127 TCCTACTATCGCAACCCTCAGTCTGATCCAATCTTAGACT
34279214 AGGAATGAAC
Statistics
Matches: 140, Mismatches: 23, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
183 2 0.01
184 136 0.97
185 1 0.01
186 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.26, T:0.22
Consensus pattern (183 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATAAAACGAGCGTGCGGGCCCTCAA
CCGGCCAGAGAGGCAGAATCTAAAGCCGGGGATCGACTCGGTCCCCCCTGCGTGCTATCGATCCT
ACTATCGCAACCCTCAGTCTGATCCAATCTTAGACTGCAAATGAACTCCATAT
Found at i:34279332 original size:342 final size:342
Alignment explanation
Indices: 34278864--34279574 Score: 1052
Period size: 342 Copynumber: 2.1 Consensus size: 342
34278854 TCGGCTAGGG
* *
34278864 CTTAGAC-ATGGAATGAACTCCC-TATGCCTAATCTAACCCATAAAATGGGTGTGCGGGCCCTCA
1 CTTAGACTA-GGAATGAAC-CCCGTATGCCTAAGCTAACCCATAAAATGGGCGTGCGGGCCCTCA
* *
34278927 GCCGGTCGGAGAGGCAGAATCTACAAGCCGGGGATCGACTCGGTCCCCCTTGCGTGCTGTCGATC
64 ACCGATCGGAGAGGCAGAATCTACAAGCCGGGGATCGACTCGGTCCCCCTTGCGTGCTGTCGATC
* *
34278992 CTTCTGTCGTAACCCTCGGTCTGGTCCGATCTTAGACTGCAAATGAACTCCATATGCTTAGACTG
129 CTACTGTCGTAACCCTCGGTCCGGTCCGATCTTAGACTGCAAATGAACTCCATATGCTTAGACTG
* *
34279057 GGGATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAACCGGCCAGAG
194 GGGATGAACTCCGTATGCCTAAGCCAACCCATAAAACGAGCGTGCGGGTGCTCAACCGACCAGAG
* * * * *
34279122 AGGCAGAATGCGTAAGCCGGGGATCGGCCTGGTCCCCCCTGCGTGTTATCGATCCTACTATCGCA
259 AGGCAAAATGCGCAAGCCGAGGATCGGCCTGGTCCCCCCTGCGTGCTACCGATCCTACTATCGCA
34279187 ACCCT-CAGTCTGATCCAAT
324 ACCCTCCA-TCTGATCCAAT
* *
34279206 CTTAGACTAGGAATGAACCCCGTATGCCTAAGCTAACCCATGAAATGGGCGTGCGGGCCCTCAAT
1 CTTAGACTAGGAATGAACCCCGTATGCCTAAGCTAACCCATAAAATGGGCGTGCGGGCCCTCAAC
* * * * *
34279271 CGATCGGAGAGGCAGAATAC-GCAAGCCGGGGATCGACTCGGTCTCCTTTGCTTGGTGTCGATCC
66 CGATCGGAGAGGCAGAAT-CTACAAGCCGGGGATCGACTCGGTCCCCCTTGCGTGCTGTCGATCC
**
34279335 TACTGTCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGG
130 TACTGTCGTAACCCTCGGTCCGGTCCGATCTTAGACTGCAAATGAACTCCATATGCTTAGACTGG
* ** *
34279400 GGATGAACTCCGTATGCCTAAGCCAACCCATAAAATGAGCGTGCGGGTGCTCAGTCGACCGGAGA
195 GGATGAACTCCGTATGCCTAAGCCAACCCATAAAACGAGCGTGCGGGTGCTCAACCGACCAGAGA
* * *
34279465 GGCAAAATGTGCAAGCCGAGGATCGGCCTGGTCCCCCCTGCGTGCTACCGATCCTGCTGTCGCAA
260 GGCAAAATGCGCAAGCCGAGGATCGGCCTGGTCCCCCCTGCGTGCTACCGATCCTACTATCGCAA
* *
34279530 CCTTCCATCTGGTCCAAT
325 CCCTCCATCTGATCCAAT
* **
34279548 CTTAGACTGGGAATGAACTTCGTATGC
1 CTTAGACTAGGAATGAACCCCGTATGC
34279575 TTAGACTGGG
Statistics
Matches: 331, Mismatches: 34, Indels: 8
0.89 0.09 0.02
Matches are distributed among these distances:
341 3 0.01
342 324 0.98
343 4 0.01
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.22
Consensus pattern (342 bp):
CTTAGACTAGGAATGAACCCCGTATGCCTAAGCTAACCCATAAAATGGGCGTGCGGGCCCTCAAC
CGATCGGAGAGGCAGAATCTACAAGCCGGGGATCGACTCGGTCCCCCTTGCGTGCTGTCGATCCT
ACTGTCGTAACCCTCGGTCCGGTCCGATCTTAGACTGCAAATGAACTCCATATGCTTAGACTGGG
GATGAACTCCGTATGCCTAAGCCAACCCATAAAACGAGCGTGCGGGTGCTCAACCGACCAGAGAG
GCAAAATGCGCAAGCCGAGGATCGGCCTGGTCCCCCCTGCGTGCTACCGATCCTACTATCGCAAC
CCTCCATCTGATCCAAT
Found at i:34279336 original size:158 final size:158
Alignment explanation
Indices: 34279048--34279390 Score: 418
Period size: 158 Copynumber: 2.2 Consensus size: 158
34279038 ACTCCATATG
* **
34279048 CTTAGACTGGGGATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCCCTCAAC
* * * * *
34279113 CGGCCAGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCTGGTCCCCCCTGCGTGTTATCGATCCT
66 CGACCAGAGAGGCAGAATACGCAAGCCGGGGATCGACCTGGTCCCCCCTGCGTGGTATCGATCCT
*
34279178 ACTATCGCAACCCTCAGTCTGATCCAAT
131 ACTATCGCAACCCTCAGTCCGATCCAAT
* * * * * *
34279206 CTTAGACTAGGAATGAACCCCGTATGCCTAAGCTAACCCATGAAATGGGCGTGCGGGCCCTCAAT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCCCTCAAC
* * * ** * *
34279271 CGATCGGAGAGGCAGAATACGCAAGCCGGGGATCGA-CTCGGTCTCCTTTGCTTGGTGTCGATCC
66 CGACCAGAGAGGCAGAATACGCAAGCCGGGGATCGACCT-GGTCCCCCCTGCGTGGTATCGATCC
* * * * *
34279335 TACTGTCGTAACCCTCGGTCCGGTCCGAT
130 TACTATCGCAACCCTCAGTCCGATCCAAT
*
34279364 CTTAGACTGGGAATGAACTCCATATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
34279391 TTAGACTGGG
Statistics
Matches: 154, Mismatches: 30, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
157 2 0.01
158 152 0.99
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCCCTCAAC
CGACCAGAGAGGCAGAATACGCAAGCCGGGGATCGACCTGGTCCCCCCTGCGTGGTATCGATCCT
ACTATCGCAACCCTCAGTCCGATCCAAT
Found at i:34279400 original size:26 final size:26
Alignment explanation
Indices: 34279364--34279416 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34279354 CCGGTCCGAT
34279364 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
34279390 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
34279416 C
1 C
34279417 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:34279519 original size:184 final size:184
Alignment explanation
Indices: 34279206--34279631 Score: 521
Period size: 184 Copynumber: 2.3 Consensus size: 184
34279196 CTGATCCAAT
* * * * * *
34279206 CTTAGACTAGGAATGAACCCCGTATGCCTAAGCTAACCCATGAAATGGGCGTGCGGGCCCTCAAT
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGCCAACCCATAAAATGAGCGTGCGGGCCCTCAAT
* * * * ** * * **
34279271 CGATCGGAGAGGCAGAATACGCAAGCCGGGGATCGACTCGGTCTCCTTTGCTTGGTGTCGATCCT
66 CGACCGGAGAGGCAAAATACGCAAGCCGAGGATCGACTCGGTCCCCCCTGCGTGCTACCGATCCT
* ** *
34279336 ACTGTCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATG
131 ACTGTCGCAACCCTCCATCCGGTCCAATCTTAGACTGGGAATGAACTCCATATG
** *
34279390 CTTAGACTGGGGATGAACTCCGTATGCCTAAGCCAACCCATAAAATGAGCGTGCGGGTGCTCAGT
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGCCAACCCATAAAATGAGCGTGCGGGCCCTCAAT
** *
34279455 CGACCGGAGAGGCAAAATGTGCAAGCCGAGGATCGGC-CTGGTCCCCCCTGCGTGCTACCGATCC
66 CGACCGGAGAGGCAAAATACGCAAGCCGAGGATCGACTC-GGTCCCCCCTGCGTGCTACCGATCC
* * * * *
34279519 TGCTGTCGCAACCTTCCATCTGGTCCAATCTTAGACTGGGAATGAACTTCGTATG
130 TACTGTCGCAACCCTCCATCCGGTCCAATCTTAGACTGGGAATGAACTCCATATG
* * * *
34279574 CTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGCCAACCCATAAAATGAGCGTGCGGGC
34279632 GTTCAATCAG
Statistics
Matches: 205, Mismatches: 36, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
183 1 0.00
184 204 1.00
ACGTcount: A:0.23, C:0.27, G:0.27, T:0.22
Consensus pattern (184 bp):
CTTAGACTGGGGATGAACTCCGTATGCCTAAGCCAACCCATAAAATGAGCGTGCGGGCCCTCAAT
CGACCGGAGAGGCAAAATACGCAAGCCGAGGATCGACTCGGTCCCCCCTGCGTGCTACCGATCCT
ACTGTCGCAACCCTCCATCCGGTCCAATCTTAGACTGGGAATGAACTCCATATG
Found at i:34279584 original size:26 final size:26
Alignment explanation
Indices: 34279548--34279600 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34279538 CTGGTCCAAT
34279548 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
*
34279574 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
34279600 C
1 C
34279601 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:34279967 original size:26 final size:26
Alignment explanation
Indices: 34279916--34279968 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
34279906 CCGGTCTGGT
*
34279916 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
34279942 CTTAGACAT-GGAATGAACTTCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
34279968 C
1 C
34279969 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34281178 original size:26 final size:26
Alignment explanation
Indices: 34281140--34281195 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
34281130 GGCTTAAAAT
34281140 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
**
34281166 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
34281192 CTTA
1 CTTA
34281196 AGCCAACCCA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
26 26 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:34282593 original size:722 final size:723
Alignment explanation
Indices: 34280415--34282674 Score: 3819
Period size: 723 Copynumber: 3.1 Consensus size: 723
34280405 GTCCAGTCTG
* **
34280415 ATCTTAGACTGGGAATGAACTCCATATGCTTAGAC-TGGGGATGAACT-TCGTATGCCTAAGTTA
1 ATCTTAGACTGGGAATGAACTCCATATGCTTAGACAT-GGAATGAACTCT-GTATGCCTAAGCCA
* * * * * * *
34280478 ACCCATGAAACCAGCGTGCGGGCGCTCAGCCGACCAGAGAGGCAGGATGCACAAGCCGGGGATCG
64 ACCCACGAAACGAGCGTGCGGGCGCTCAGTCGATCAGAGAGGTAGGATGCGCAAGTCGGGGATCG
* * *
34280543 AACGAGTGGTAGGTGGGTTCAAGCACATCTTTATATTTCTGCCATGCCAATACCATTTTTATGGC
129 AACGGGTGGTAGGTGGGTTCAAGTACATCTTTATATTTCTGCCATGCCAATGCCATTTTTATGGC
* ** * * *
34280608 TTGTAAATTCGTACAATGGTCCCCTAAGCCTACATGTGAAGTTTCATGGCAAGACGACCCGTTTT
194 TTGTAAATTCATACAATGGTCCCCTAAGCCTTTATATGAAGTTTCGTGGCAAGATGACCCGTTTT
* ** ** * * *
34280673 TTATTTTTCACAATTTTTGAAACTTTTTACGGTTCGACATTTTTTAAAATTATTTTAAAAAGAGT
259 CTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTAGAAAGATT
* ** * * *
34280738 TTTGTCCCCAAATTTTAATAGAGGTGATCCTTGTATTTTTGTAGGCATGCACAAAAAAATTTAGC
324 TTTGTCCCCTAA-TTTGGTAGAGGTGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGC
* * * *
34280803 TAAAAACTCGAAGTGGAGAAGATTTTGTGTCCGTTTGAAAAAAGTGT-CCCATTTTAGACACTTT
388 TAAAAACTTGAAGTGGAGAGGATTTTGTGTCCGTTTGAAAAAGGTGTCCCCATTTTAGACGCTTT
* * *
34280867 AATGGTTACTGGCAGCAAACTTATAAAACTTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
453 GATGGCTACTGGCAGCAAACCTATAAAACTTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
34280932 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
518 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
34280997 ACACTCCCCCGGCCCCCCAATCGCCGAAACCCCCAATGCCGCCAGTTAGGCTCTCCGGCAATGCT
583 ACACTCCCCCGGCCCCCCAATCGCCGAAACCCCCAATGCCGCCAGTTAGGCTCTCCGGCAATGCT
34281062 CCGACGATGGTGCCCTGGGCGAAAAAAATACGATACCAGCACATGCCCGAGCCTAGCATGTGCAC
648 CCGACGATGGTGCCCTGGGCGAAAAAAATACGATACCAGCACATGCCCGAGCCTAGCATGTGCAC
34281127 CATGGCTTAAA
713 CATGGCTTAAA
*
34281138 ATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCTGTATGCTTAAGCCAAC
1 ATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAAC
*
34281203 CCACGAAATGAGCGTGCGGGCGCTCAGTCGATCAGAGAGGTAGGATGCGCAAGTCGGGGATCGAA
66 CCACGAAACGAGCGTGCGGGCGCTCAGTCGATCAGAGAGGTAGGATGCGCAAGTCGGGGATCGAA
34281268 CGGGTGGTAGGTGGGTTCAAGTACATCTTTATATTTCTGCCATGCCAATGCCATTTTTATGGCTT
131 CGGGTGGTAGGTGGGTTCAAGTACATCTTTATATTTCTGCCATGCCAATGCCATTTTTATGGCTT
34281333 GTAAATTCATACAATGGTCCCCTAAGCCTTTATATGAAGTTTCGTGGCAAGATGACCCGTTTTCT
196 GTAAATTCATACAATGGTCCCCTAAGCCTTTATATGAAGTTTCGTGGCAAGATGACCCGTTTTCT
34281398 ATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTAGAAAGATTTT
261 ATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTAGAAAGATTTT
34281463 TGTCCCCTAATTTGGTAGAGGTGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAA
326 TGTCCCCTAATTTGGTAGAGGTGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAA
34281528 AAACTTGAAGTGGAGAGGATTTTGTGTCCGTTTGAAAAAGGTGTCCCCATTTTAGACGCTTTGAT
391 AAACTTGAAGTGGAGAGGATTTTGTGTCCGTTTGAAAAAGGTGTCCCCATTTTAGACGCTTTGAT
34281593 GGCTACTGGCAGCAAA-CTCATAAAACTTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
456 GGCTACTGGCAGCAAACCT-ATAAAACTTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
34281657 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
520 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
34281722 ACTCCCCCGGCCCCCCAATCGCCGAAACCCCCAATGCCGCCAGTTAGGCTCTCCGGCAATGCTCC
585 ACTCCCCCGGCCCCCCAATCGCCGAAACCCCCAATGCCGCCAGTTAGGCTCTCCGGCAATGCTCC
34281787 GACGATGGTGCCCTGGGCGAAAAAAATACGATACCAGCACATGCCCGAGCCTAGCATGTGCACCA
650 GACGATGGTGCCCTGGGCGAAAAAAATACGATACCAGCACATGCCCGAGCCTAGCATGTGCACCA
34281852 TGGCTTAAA
715 TGGCTTAAA
*
34281861 ATCTTAGACTTGGAATGAACTCCATATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAAC
1 ATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAAC
*
34281926 CCACGAAATGAGCGTGCGGGCGCTCAGTCGATCAGAGAGGTAGGATGCGCAAGTCGGGGATCGAA
66 CCACGAAACGAGCGTGCGGGCGCTCAGTCGATCAGAGAGGTAGGATGCGCAAGTCGGGGATCGAA
34281991 CGGGTGGTAGGTGGGTTCAAGTACATCTTTATATTTCTGCCATGCCAATGCCATTTTTATGGCTT
131 CGGGTGGTAGGTGGGTTCAAGTACATCTTTATATTTCTGCCATGCCAATGCCATTTTTATGGCTT
34282056 GTAAATTCATACAATGGTCCCCTAAGCCTTTATATGAAGTTTCGTGGCAAGATGACCCGTTTTCT
196 GTAAATTCATACAATGGTCCCCTAAGCCTTTATATGAAGTTTCGTGGCAAGATGACCCGTTTTCT
34282121 ATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTT-AAATTTTTTTAGAAAGATTTT
261 ATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTAGAAAGATTTT
34282185 TGTCCCCTAATTTGGTAGAGGTGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAA
326 TGTCCCCTAATTTGGTAGAGGTGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAA
34282250 AAACTTGAAGTGGAGAGGATTTTGTGTCCGTTTGAAAAAGGTGTCCCCATTTTAGACGCTTTGAT
391 AAACTTGAAGTGGAGAGGATTTTGTGTCCGTTTGAAAAAGGTGTCCCCATTTTAGACGCTTTGAT
* * *
34282315 GGCTACTGGCAGCAAACCTATAAAACCTCAAATGCTCTTTAAGGGGGTGTGATTTCTTGAGGTTT
456 GGCTACTGGCAGCAAACCTATAAAACTTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
*
34282380 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACA
521 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
* * ** * * * **
34282445 CTCCCCCGACCGCCCAATCGTTGGAACCCCCAATGCCGCCAGTTAGGCTCTCCAGCGATGCTGTG
586 CTCCCCCGGCCCCCCAATCGCCGAAACCCCCAATGCCGCCAGTTAGGCTCTCCGGCAATGCTCCG
* * * ** *
34282510 GCGATGGTGCCCCGGGTGAAAAAAATACGGCACCAGCACATGCCTGAGCCTAGCATGTGCACCAT
651 ACGATGGTGCCCTGGGCGAAAAAAATACGATACCAGCACATGCCCGAGCCTAGCATGTGCACCAT
*
34282575 GGCTCAAA
716 GGCTTAAA
* * * *
34282583 ATCTTAGACTTGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAGC
1 ATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAAC
* *
34282648 CAACGAAACGAGCATGCGGGCGCTCAG
66 CCACGAAACGAGCGTGCGGGCGCTCAG
34282675 CTTGCCGGAG
Statistics
Matches: 1462, Mismatches: 70, Indels: 11
0.95 0.05 0.01
Matches are distributed among these distances:
722 574 0.39
723 886 0.61
724 2 0.00
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.28
Consensus pattern (723 bp):
ATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAAC
CCACGAAACGAGCGTGCGGGCGCTCAGTCGATCAGAGAGGTAGGATGCGCAAGTCGGGGATCGAA
CGGGTGGTAGGTGGGTTCAAGTACATCTTTATATTTCTGCCATGCCAATGCCATTTTTATGGCTT
GTAAATTCATACAATGGTCCCCTAAGCCTTTATATGAAGTTTCGTGGCAAGATGACCCGTTTTCT
ATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTAGAAAGATTTT
TGTCCCCTAATTTGGTAGAGGTGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAA
AAACTTGAAGTGGAGAGGATTTTGTGTCCGTTTGAAAAAGGTGTCCCCATTTTAGACGCTTTGAT
GGCTACTGGCAGCAAACCTATAAAACTTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
CTCCCCCGGCCCCCCAATCGCCGAAACCCCCAATGCCGCCAGTTAGGCTCTCCGGCAATGCTCCG
ACGATGGTGCCCTGGGCGAAAAAAATACGATACCAGCACATGCCCGAGCCTAGCATGTGCACCAT
GGCTTAAA
Found at i:34282622 original size:26 final size:26
Alignment explanation
Indices: 34282585--34282637 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
34282575 GGCTCAAAAT
*
34282585 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
34282611 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
34282637 C
1 C
34282638 CTAAGCCAGC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:34283121 original size:25 final size:26
Alignment explanation
Indices: 34283087--34283138 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34283077 CCGATTCAAT
34283087 CTTAGACT-GGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
34283112 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
34283138 C
1 C
34283139 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 8 0.32
26 17 0.68
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:34283482 original size:26 final size:26
Alignment explanation
Indices: 34283453--34283505 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34283443 CTGGTCTGAT
*
34283453 CTTAGAC-TGGGAATGAAGTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
34283479 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
34283505 C
1 C
34283506 CTAAGGCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:34283857 original size:159 final size:157
Alignment explanation
Indices: 34283524--34284259 Score: 589
Period size: 158 Copynumber: 4.7 Consensus size: 157
34283514 ACCCACGAAA
* * * * * * *
34283524 AGGCAGAATGCACAAGTCGGGGATCGACCCGATCCCCCCTGCGTGCTATCGTTCCTACTATCACA
1 AGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTACCGATCCTGCTACCACA
* * * *
34283589 ACCCTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAT
66 ACCCTCGGTCTGG-CTGATCTTAGACTGGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAA-
* * *
34283654 GAA-CGTGCGGGCACTGAGCCAGTCGAAG
129 CAAGCGTGCGGGCACTCAGCCAGTCGGAG
* * * * *
34283682 AGGCATAATTCGCAAGCCGGGGATCGACCCGGTCCCTCTCTGCGTGCTACCGGTCCTGCTGCCAC
1 AGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCC-CCCTGCGTGCTACCGATCCTGCTACCAC
**
34283747 AACCCTCGGTCTGGCTAGGGCTTAGACAT-GGAATGAACTCCTTATGCCTAAGCCAACCCACGAA
65 AACCCTCGGTCTGGCT-GATCTTAGAC-TGGGAATGAACTCCTTATGCCTAAGCCAACCCACGAA
** * * *
34283811 ATGAGCGTGTGGGCACTCAGTCGGTCGGAG
128 ACAAGCGTGCGGGCACTCAGCCAGTCGGAG
* * * * * * * *
34283841 AGGCAGAATGCACAAGCTGGGGATCGACCCGATCCCCCCTGTGTGCTATCAATCCTGCTATCGCA
1 AGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTACCGATCCTGCTACCACA
* * * *
34283906 ACCCTTGGTCCAGTCTGATCTTAGACTGGGAATGAACT-CTGTATGCCTAAGTCAACCCACGAAA
66 ACCCTCGGT-CTGGCTGATCTTAGACTGGGAATGAACTCCT-TATGCCTAAGCCAACCCACGAAA
* ** * **
34283970 CAAGCGTGGGGGTGCT-GGCCAACCGGAG
129 CAAGCGTGCGGGCACTCAGCCAGTCGGAG
* * * * ** *
34283998 AGGCATAATGCGCAAGCTGAGGG-T-AAGCTCGGTCCCCTTTTGCGTG-T-CGTCGATCCTGCTG
1 AGGCAGAATGCGCAAGCCG-GGGATCGA-CCCGGTCCCC-CCTGCGTGCTAC--CGATCCTGCTA
** * * * * *
34284059 CCACAACTTTCAGT-TCGGCTTTG-GCTTAGACAT-GGAATGAACTCCCTATGCCTAATCCAACT
61 CCACAACCCTCGGTCT-GGC--TGATCTTAGAC-TGGGAATGAACTCCTTATGCCTAAGCCAACC
* * * * *
34284121 CACAAAACAAGCGTACGAGCGCTCAGCCGGTCGGAG
122 CACGAAACAAGCGTGCGGGCACTCAGCCAGTCGGAG
* * * * * * *
34284157 AGGC-GAAATGTGCAAGCCAGGGATCGGCCCGGT-CCTCCTGCGCGCTGCCGATCCTGCTACCGC
1 AGGCAG-AATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTACCGATCCTGCTACCAC
34284220 AACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTC
65 AACCCTCGGTCTGG-CTGATCTTAGACTGGGAATGAACTC
34284260 TGTATGCTTA
Statistics
Matches: 448, Mismatches: 103, Indels: 55
0.74 0.17 0.09
Matches are distributed among these distances:
156 4 0.01
157 84 0.19
158 195 0.44
159 164 0.37
160 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.21
Consensus pattern (157 bp):
AGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTACCGATCCTGCTACCACA
ACCCTCGGTCTGGCTGATCTTAGACTGGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAACA
AGCGTGCGGGCACTCAGCCAGTCGGAG
Found at i:34283962 original size:158 final size:158
Alignment explanation
Indices: 34283519--34283969 Score: 559
Period size: 159 Copynumber: 2.8 Consensus size: 158
34283509 AGGCAACCCA
* * *
34283519 CGAAAAGGCAGAATGCACAAG-TCGGGGATCGACCCGATCCCCCCTGCGTGCTATCGTTCCTACT
1 CGAAGAGGCAGAATGCACAAGCT-GGGGATCGACCCGATCCCCCCTGCGTGCTATCGATCCTGCT
* *
34283583 ATCACAACCCTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
65 ATCACAACCCTTGGTCCAGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCA
*
34283648 CGAAATGAACGTGCGGGCACTGAGCCAGT
130 CGAAATGAACGTGCGGGCACTCAGCCAGT
* * * * * * * *
34283677 CGAAGAGGCATAATTCGCAAGCCGGGGATCGACCCGGTCCCTCTCTGCGTGCTACCGGTCCTGCT
1 CGAAGAGGCAGAATGCACAAGCTGGGGATCGACCCGATCCC-CCCTGCGTGCTATCGATCCTGCT
** * * * ** *
34283742 GCCACAACCCTCGGT-CTGGCTAGGGCTTAGACAT-GGAATGAACTCCT-TATGCCTAAGCCAAC
65 ATCACAACCCTTGGTCCAGTCT-GATCTTAGAC-TGGGAATGAACT-CTGTATGCCTAAGTCAAC
* * * *
34283804 CCACGAAATGAGCGTGTGGGCACTCAGTCGGT
127 CCACGAAATGAACGTGCGGGCACTCAGCCAGT
* * *
34283836 CGGAGAGGCAGAATGCACAAGCTGGGGATCGACCCGATCCCCCCTGTGTGCTATCAATCCTGCTA
1 CGAAGAGGCAGAATGCACAAGCTGGGGATCGACCCGATCCCCCCTGCGTGCTATCGATCCTGCTA
*
34283901 TCGCAACCCTTGGTCCAGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCAC
66 TCACAACCCTTGGTCCAGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCAC
34283966 GAAA
131 GAAA
34283970 CAAGCGTGGG
Statistics
Matches: 241, Mismatches: 44, Indels: 16
0.80 0.15 0.05
Matches are distributed among these distances:
157 3 0.01
158 107 0.44
159 129 0.54
160 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.25, T:0.21
Consensus pattern (158 bp):
CGAAGAGGCAGAATGCACAAGCTGGGGATCGACCCGATCCCCCCTGCGTGCTATCGATCCTGCTA
TCACAACCCTTGGTCCAGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCAC
GAAATGAACGTGCGGGCACTCAGCCAGT
Found at i:34284269 original size:26 final size:26
Alignment explanation
Indices: 34284240--34284292 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
34284230 CTGGTCTGAT
* *
34284240 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
34284266 CTTAGACTGGGGATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
34284292 C
1 C
34284293 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:34285000 original size:26 final size:26
Alignment explanation
Indices: 34284962--34285014 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34284952 GGCTCAAAAT
34284962 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
34284988 CTTAGAC-ATGGAATGAACTCTGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
34285014 C
1 C
34285015 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:34285847 original size:171 final size:171
Alignment explanation
Indices: 34285487--34285856 Score: 433
Period size: 171 Copynumber: 2.2 Consensus size: 171
34285477 AACTTCGCAT
* * * * *
34285487 GCTTAGACTGAGG-ATGAACTCTGTATGCCTAAGTCAACCCATGAAATGAGTGTGTGGGTGCTCA
1 GCTTAGACTG-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGTGTGCGGGCGCTCA
* * * * * *
34285551 GTCAGTCGGAAAGGCATAATGCGCAAGCCGGGGATCAACCCGGTCCCCCTCTATGTGCTGTCGAT
65 GTCAGCCGGAAAGGCAGAATGCACAAGCCGGGGATCAACCCGATCCCCCACTACGTGCTGTCGAT
* * *
34285616 CCCGTTGTCAGTCCTGCTACCACAACCCTCAGTTCGGTCGGG
130 CCCGTTGTCAGTCCTACCACCACAACCCTCAGTTCGGTCGGA
* *
34285658 GCATAGACAT-GTAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGTGTGCGGGCGCTCA
1 GCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGTGTGCGGGCGCTCA
* * *
34285722 G-CTAGCCGGAGAGGTAGAATGCACAAGCCGGGGATCGACCCGATCCCCCACTACGTGCTGTCGA
65 GTC-AGCCGGAAAGGCAGAATGCACAAGCCGGGGATCAACCCGATCCCCCACTACGTGCTGTCGA
* * ** * *
34285786 TCTCGTTG-CTGATCCTACCACCGTAACCCTCGGTTCGGTCTGA
129 TCCCGTTGTCAG-TCCTACCACCACAACCCTCAGTTCGGTCGGA
* *
34285829 TCTTAGACTGGGAATGAACTTCGTATGC
1 GCTTAGACTGGGAATGAACTCCGTATGC
34285857 TTAGACATGG
Statistics
Matches: 165, Mismatches: 29, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
170 5 0.03
171 159 0.96
172 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.22
Consensus pattern (171 bp):
GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGTGTGCGGGCGCTCAG
TCAGCCGGAAAGGCAGAATGCACAAGCCGGGGATCAACCCGATCCCCCACTACGTGCTGTCGATC
CCGTTGTCAGTCCTACCACCACAACCCTCAGTTCGGTCGGA
Found at i:34285859 original size:26 final size:26
Alignment explanation
Indices: 34285830--34285882 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34285820 TCGGTCTGAT
*
34285830 CTTAGAC-TGGGAATGAACTTCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
34285856 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
34285882 C
1 C
34285883 CTAAGCCAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:34285980 original size:368 final size:355
Alignment explanation
Indices: 34285300--34286225 Score: 819
Period size: 368 Copynumber: 2.6 Consensus size: 355
34285290 CGGTCCGACT
* * *
34285300 GGGGCTTAGGCATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTACGGGCGCT
1 GGGGCATAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCGCT
* * * *
34285365 CAACTGGCCGGAGAGGCAGAATGCACAAGCCGAGGATCGGCCCGGTCCCCCCTGCATGCTGCCGA
66 CAACTAGCCGGAGAGGCAGAATGCACAAGCCGAGGATCGACCCGATCCCCCCTACATGCTGCCGA
34285430 TCCTATTGTCGCAACCATCGGTTCGGTCCGATCTTAGACTGGGAATGAACTTCGCATGCTTAGAC
131 TCCTATTGTCGCAACCATCGGTTCGGTCCGATCTTAGACTGGGAATGAACTTCGCATGCTTAGAC
* * * * ** ** ** *
34285495 TGAGGATGAACTCTGTATGCCTAAGTCAACCCATGAAATGAGTGTGTGGGTGCTCAGTCAGTCGG
196 TGAGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGACCGTGTGGGCACTCAACCAGCCGG
* ** * * **
34285560 AAAGGCATAATGCGCAAGCCGGGGATCAACCCGGTCCCCCTCTATGTGCTGTCGATCCCGTTGTC
261 AAAGGCAAAATGCGCAAGCAAGGGATCAACCCGATCCCCCCCTACATGCTGTCGATCCCGTTGTC
34285625 AGTCCTGCTACCACAACCCTCAGTTCGGTC
326 AGTCCTGCTACCACAACCCTCAGTTCGGTC
* * * * * *
34285655 GGGGCATAGACATGTAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGTGTGCGGGCGCT
1 GGGGCATAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCGCT
* * * * *
34285720 CAGCTAGCCGGAGAGGTAGAATGCACAAGCCGGGGATCGACCCGATCCCCCACTACGTGCTGTCG
66 CAACTAGCCGGAGAGGCAGAATGCACAAGCCGAGGATCGACCCGATCCCCC-CTACATGCTGCCG
*
34285785 ATCTCGT-TGCTGATC-CTACCACCGTAACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAAC
130 ATC-C-TAT--TG-TCGC-A--ACC---A---TCGGTTCGGTCCGATCTTAGACTGGGAATGAAC
* *
34285848 TTCGTATGCTTAGACATG-GAATGAACTCCGTATGCCTAAGCCAATCCACGAAATGACCGTGTGG
181 TTCGCATGCTTAGAC-TGAGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGACCGTGTGG
* * * *
34285912 GCACTCAACC-GACCGGAGAGGCAAAATGCGTAAGCAAGGGATCGACCCGATCCCCCCCTGCATG
245 GCACTCAACCAG-CCGGAAAGGCAAAATGCGCAAGCAAGGGATCAACCCGATCCCCCCCTACATG
* * * * * *
34285976 CTGTCGGT-CC--TG---G---TG---CCACACCCCTTA-ATCCGAC
309 CTGTCGATCCCGTTGTCAGTCCTGCTACCACAACCCTCAGTTCGGTC
* ** * * * *
34286010 TGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAGGAAATGGGCGTGCGGGCAC
1 -GGGGCATAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCGC
* * * * * * * *
34286075 TCAA-TCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGGTCCCCCCTGCATGCTGCC
65 TCAACTAG-CCGGAGAGGCAGAATGCACAAGCCGAGGATCGACCCGATCCCCCCTACATGCTGCC
** * * * * * ** * * **
34286139 GATCCTGCTGCCACAACTC-TCGATCCGATTTGATCTTAGACTGGGGATGAACTCCATATGCTTA
129 GATCCTATTGTCGCAAC-CATCGGTTCGGTCCGATCTTAGACTGGGAATGAACTTCGCATGCTTA
* * *
34286203 GATTGAGGATGAACTCTGTATGC
193 GACTGAGAATGAACTCCGTATGC
34286226 TTAGACTGGG
Statistics
Matches: 469, Mismatches: 79, Indels: 58
0.77 0.13 0.10
Matches are distributed among these distances:
342 2 0.00
343 55 0.12
349 2 0.00
350 1 0.00
351 2 0.00
352 3 0.01
353 1 0.00
354 1 0.00
355 120 0.26
356 121 0.26
357 2 0.00
358 1 0.00
359 5 0.01
360 3 0.01
362 4 0.01
365 3 0.01
367 3 0.01
368 138 0.29
369 2 0.00
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (355 bp):
GGGGCATAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCGCT
CAACTAGCCGGAGAGGCAGAATGCACAAGCCGAGGATCGACCCGATCCCCCCTACATGCTGCCGA
TCCTATTGTCGCAACCATCGGTTCGGTCCGATCTTAGACTGGGAATGAACTTCGCATGCTTAGAC
TGAGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGACCGTGTGGGCACTCAACCAGCCGG
AAAGGCAAAATGCGCAAGCAAGGGATCAACCCGATCCCCCCCTACATGCTGTCGATCCCGTTGTC
AGTCCTGCTACCACAACCCTCAGTTCGGTC
Found at i:34286112 original size:159 final size:158
Alignment explanation
Indices: 34285855--34286153 Score: 427
Period size: 159 Copynumber: 1.9 Consensus size: 158
34285845 AACTTCGTAT
* * *
34285855 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAATCCACGAAATGACCGTGTGGGCACTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGACCGTGCGGGCACTCAA
* * *
34285920 CCGACCGGAGAGGCAAAATGCGTAAGCAAGGGATCGACCCGATCCCCCCCTGCATGCTGTCGGTC
66 CCGACCGGAGAGGCAAAATGCGCAAGCAAGGGATCGACCCGAT-CCCCCCTGCATGCTGCCGATC
*
34285985 CTGGTGCCACACCCCTTAATCCGACTGGG
130 CTGCTGCCACACCCCTTAATCCGACTGGG
* **
34286014 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAGGAAATGGGCGTGCGGGCACTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGACCGTGCGGGCACTCAA
* * * ** * * *
34286079 TCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGGTCCCCCCTGCATGCTGCCGATCC
66 CCGACCGGAGAGGCAAAATGCGCAAGCAAGGGATCGACCCGATCCCCCCTGCATGCTGCCGATCC
34286144 TGCTGCCACA
131 TGCTGCCACA
34286154 ACTCTCGATC
Statistics
Matches: 122, Mismatches: 18, Indels: 1
0.87 0.13 0.01
Matches are distributed among these distances:
158 29 0.24
159 93 0.76
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.17
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGACCGTGCGGGCACTCAA
CCGACCGGAGAGGCAAAATGCGCAAGCAAGGGATCGACCCGATCCCCCCTGCATGCTGCCGATCC
TGCTGCCACACCCCTTAATCCGACTGGG
Found at i:34286212 original size:26 final size:26
Alignment explanation
Indices: 34286173--34286241 Score: 102
Period size: 26 Copynumber: 2.7 Consensus size: 26
34286163 CCGATTTGAT
34286173 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGGATGAACTCCATATG
* * **
34286199 CTTAGATTGAGGATGAACTCTGTATG
1 CTTAGACTGGGGATGAACTCCATATG
34286225 CTTAGACTGGGGATGAA
1 CTTAGACTGGGGATGAA
34286242 ATTTTTACGG
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 37 1.00
ACGTcount: A:0.28, C:0.14, G:0.29, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCATATG
Found at i:34287332 original size:26 final size:26
Alignment explanation
Indices: 34287294--34287346 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
34287284 GGCTCAAAGT
34287294 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
34287320 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
34287346 C
1 C
34287347 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34287433 original size:739 final size:738
Alignment explanation
Indices: 34286581--34288156 Score: 2561
Period size: 739 Copynumber: 2.1 Consensus size: 738
34286571 GGCTCAAAGT
34286581 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGGAACGAGCGTGCGGGTGCTCAA
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGGAACGAGCGTGCGGGTGCTCAA
* * *
34286645 CCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCTTGATCCCTCTATGCGTGTTGGCGGTC
65 CCGGCCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCTTGATCCCTCTATGCGTGTTGGCAGTC
34286710 CCGCTGCCACAACCCT-AGATCCGGTTGGGGCTTAGACAAGGAATGAACTCCCTATGCCTAAGCC
130 CCGCTGCCACAACCCTCAG-TCCGGTTGGGGCTTAGACAAGGAATGAACTCCCTATGCCTAAGCC
* * * **
34286774 AACCCACGAAATGGGTGTGCGGGCACTCAGTCGACCGGAAAGGCAGAATGCGTAAGTCAG-GGAT
194 AACCCACGAAACGGGCGTGCGGGCACTCAATCGACCGGAAAGGCAGAATGCACAAG-CAGAGGAT
* * * * *
34286838 CGGCTCGGTCCCCCTGCGTGCTGTTGATCTTGCTGCCGCAACCCTCGGTTCAGTTCGATCTTAGA
258 CGGCTCGGTCCCCCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCGATCCAGTTCGATCTTAGA
* * *
34286903 CTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTTTTTATGGTTCAGGATTTTTTTAATT
323 CTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTTTTTACGGTTCAGGATTTTTTAAAAT
*
34286968 TTTTTTAGAAAATG-TTTTTCCCCAAATTTGGTAGAGGTGATCCTTGTACTTTAATTGCTATTGG
388 TTTTTTAGAAAATGTTTTTTCCCCAAATTTGGTAGAGGTGATCCTTGTACTTTAATGGCTATTGG
* *
34287032 CAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
453 CAACAAACCTATAAAATCTCAAATGCTCATTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
* * *
34287097 TAGGGGACCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGG
518 TAGAGGACCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATATGCGCACA-CCCCCCAG
* * *
34287162 CCCTCCCAAT-TGTCGAAACCCCCAATGCCATCGGTTAGGCTCTCCGACGATGCTTCGATGATGG
582 CCCTCCCAATCT-TCG-AACCCCCAATGCCATCGATTAGGCTCTCCGACGATGCTCCGACGATGG
*
34287226 TGCCCCGAGCAAAAAAAATGCGGCACCAGTACATGCCCGAGTCCAGCATGTGCTCTGTGGCTCAA
645 TGCCCCGAGCAAAAAAAATGCGGCACCAGCACATGCCCGAGTCCAGCATGTGCTCTGTGGCTCAA
34287291 AGTCTTAGACTGGGAATGAACTCCGTATG
710 AGTCTTAGACTGGGAATGAACTCCGTATG
* *
34287320 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAGAACGAGCGTGCCGGTGCTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGGAACGAGCGTGCGGGTGCTCAAC
* *
34287385 CGGCCGGAGAGGCAGAATGCACAAGTCGGGGATCGGCTTGATCCCTCTATGCGTGTTGGCAGTCT
66 CGGCCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCTTGATCCCTCTATGCGTGTTGGCAGTCC
34287450 CGCTGCCACAACCCTCAGTCCGGTTGGGGCTTAGACAAGGAATGAACTCCCTATGCCTAAGCCAA
131 CGCTGCCACAACCCTCAGTCCGGTTGGGGCTTAGACAAGGAATGAACTCCCTATGCCTAAGCCAA
* * *
34287515 CCCACGAAACGGGCGTGCGGGCACTCAATCGATCGGAGAGGCAGAATGCACAAGCCGAGGATCGG
196 CCCACGAAACGGGCGTGCGGGCACTCAATCGACCGGAAAGGCAGAATGCACAAGCAGAGGATCGG
** * * *
34287580 CTCGGTCCCGTTGCGTGCTGTCGATCCTGCTACCGCAACCCTCGATCCGGTTTGATCTTAGATTG
261 CTCGGTCCCCCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCGATCCAGTTCGATCTTAGACTG
* *
34287645 GGAATGAACTCTGTATGCTTAGACTGGGGATGAACTTTTTACGGTTCGGGATTTTTTAAAATTTT
326 GGAATGAACTCCGTATGCTTAGACTGGGGATGAACTTTTTACGGTTCAGGATTTTTTAAAATTTT
*
34287710 TTTAGAAAATGTTTTTTCCCCAAATTTGGTAGAGGTGATCCTTGTACTTTAATGGCTATTGGTAA
391 TTTAGAAAATGTTTTTTCCCCAAATTTGGTAGAGGTGATCCTTGTACTTTAATGGCTATTGGCAA
34287775 CAAACCTATAAAATCTCAAATGCTCATTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
456 CAAACCTATAAAATCTCAAATGCTCATTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
34287840 AGGACCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATATGCGCACACCCCCCAGCCCT
521 AGGACCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATATGCGCACACCCCCCAGCCCT
*
34287905 CCCAATCTTCGAACCCCCAATGCCATCGATTAGGCTCTCTGACGATGCTCCGACGATGGTGCCCC
586 CCCAATCTTCGAACCCCCAATGCCATCGATTAGGCTCTCCGACGATGCTCCGACGATGGTGCCCC
* * *
34287970 GAGCGAAAAAAATGTGGCACCAGCACATGCCCGAGTCCAGCATGTGCTCTGTGGCTTAAAGTCTT
651 GAGCAAAAAAAATGCGGCACCAGCACATGCCCGAGTCCAGCATGTGCTCTGTGGCTCAAAGTCTT
34288035 AGACTGGGAATGAACTCCGTATG
716 AGACTGGGAATGAACTCCGTATG
* * *
34288058 CTTAGACACGG-ATGAGCTCCGTATGCCTAAGCCAACCCACGGAACGAGCGTGCGGGTGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGGAACGAGCGTGCGGGTGCTCAAC
* * * * * * *
34288122 TGGTCGGAAAGACAAAATGCGCAAGCCAGGGATCG
66 CGGCCGGAGAGGCAGAATGCACAAGCCGGGGATCG
34288157 ACCGGGTCCC
Statistics
Matches: 774, Mismatches: 58, Indels: 12
0.92 0.07 0.01
Matches are distributed among these distances:
737 76 0.10
738 146 0.19
739 383 0.49
740 169 0.22
ACGTcount: A:0.25, C:0.26, G:0.26, T:0.23
Consensus pattern (738 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGGAACGAGCGTGCGGGTGCTCAAC
CGGCCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCTTGATCCCTCTATGCGTGTTGGCAGTCC
CGCTGCCACAACCCTCAGTCCGGTTGGGGCTTAGACAAGGAATGAACTCCCTATGCCTAAGCCAA
CCCACGAAACGGGCGTGCGGGCACTCAATCGACCGGAAAGGCAGAATGCACAAGCAGAGGATCGG
CTCGGTCCCCCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCGATCCAGTTCGATCTTAGACTG
GGAATGAACTCCGTATGCTTAGACTGGGGATGAACTTTTTACGGTTCAGGATTTTTTAAAATTTT
TTTAGAAAATGTTTTTTCCCCAAATTTGGTAGAGGTGATCCTTGTACTTTAATGGCTATTGGCAA
CAAACCTATAAAATCTCAAATGCTCATTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
AGGACCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATATGCGCACACCCCCCAGCCCT
CCCAATCTTCGAACCCCCAATGCCATCGATTAGGCTCTCCGACGATGCTCCGACGATGGTGCCCC
GAGCAAAAAAAATGCGGCACCAGCACATGCCCGAGTCCAGCATGTGCTCTGTGGCTCAAAGTCTT
AGACTGGGAATGAACTCCGTATG
Found at i:34288454 original size:26 final size:26
Alignment explanation
Indices: 34288425--34288477 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
34288415 CTGATCCGAT
34288425 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
34288451 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
34288477 C
1 C
34288478 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:34288759 original size:158 final size:159
Alignment explanation
Indices: 34288450--34288812 Score: 419
Period size: 158 Copynumber: 2.3 Consensus size: 159
34288440 AACTCCGTAT
* * *
34288450 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGTGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCGAGCGCTCAG
* * * * **
34288515 CCAGCCAGAGAGGTAGAATGTGCAAGCCGAGGATCGACCTGGTCCCTTTCTACGTGCTGTCGATC
66 CCAGCCAGAGAGGCAGAATGCGCAAGCCGAGGATCCACCCGGTCCCCCTCTACGTGCTGTCGATC
* * * * * *
34288580 CTACTGTCGCAACCTTTGGTCCGGTCT-GA
131 CCACTGCCACAACCCTCGGTCC-GACTGGA
* * * * *
34288609 TCTTAGAC-TGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTTCGAGCGCTGAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCGAGCGCTCAG
* * * *
34288673 CCGATCGA-AGAGGCATAATGCGCAAGCCGGGGATCCACCCGGTCCCCCTCTAAC-TGCTGTCGA
66 CC-AGCCAGAGAGGCAGAATGCGCAAGCCGAGGATCCACCCGGTCCCCCTCT-ACGTGCTGTCGA
* * *
34288736 TCCCGCTGCCATAACCCTCGGTCCGACTGGG
129 TCCCACTGCCACAACCCTCGGTCCGACTGGA
*
34288767 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAA
34288813 TGGGCATAGG
Statistics
Matches: 170, Mismatches: 30, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
157 3 0.02
158 120 0.71
159 47 0.28
ACGTcount: A:0.25, C:0.29, G:0.25, T:0.21
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCGAGCGCTCAG
CCAGCCAGAGAGGCAGAATGCGCAAGCCGAGGATCCACCCGGTCCCCCTCTACGTGCTGTCGATC
CCACTGCCACAACCCTCGGTCCGACTGGA
Found at i:34288980 original size:26 final size:26
Alignment explanation
Indices: 34288944--34288994 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
34288934 CTGATCTTAA
34288944 ACTGGGAATGAACTCCGTATGCCTAG
1 ACTGGGAATGAACTCCGTATGCCTAG
*
34288970 ACTGGGGATGAACTCCGTATGCCTA
1 ACTGGGAATGAACTCCGTATGCCTA
34288995 AGTCAATTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (26 bp):
ACTGGGAATGAACTCCGTATGCCTAG
Found at i:34289348 original size:26 final size:26
Alignment explanation
Indices: 34289319--34289372 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
34289309 TCCGGTCTGA
*
34289319 GCTTAGAC-TGGGAATGAACTCCGTAT
1 GCTTAGACAT-GGAATGAACACCGTAT
34289345 GCTTAGACATGGAATGAACACCGTAT
1 GCTTAGACATGGAATGAACACCGTAT
34289371 GC
1 GC
34289373 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.24
Consensus pattern (26 bp):
GCTTAGACATGGAATGAACACCGTAT
Found at i:34290108 original size:26 final size:26
Alignment explanation
Indices: 34290079--34290132 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
34290069 GGTCAGACCT
*
34290079 TAGAC-TGAGAATGAACTCTATATGCC
1 TAGACATGA-AATGAACTCCATATGCC
*
34290105 TAGACATGAAATGAACTCCGTATGCC
1 TAGACATGAAATGAACTCCATATGCC
34290131 TA
1 TA
34290133 AGCCAACCCA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.35, C:0.20, G:0.19, T:0.26
Consensus pattern (26 bp):
TAGACATGAAATGAACTCCATATGCC
Found at i:34291031 original size:501 final size:500
Alignment explanation
Indices: 34290115--34291240 Score: 1283
Period size: 501 Copynumber: 2.2 Consensus size: 500
34290105 TAGACATGAA
* * ** **
34290115 ATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCACTCAACTGGTTGGAGAGG
1 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC-GGCACTCAGTTGGCCGGAGAGG
* * * * * * * * *
34290180 CAGAATGTGCAAG-CTGGGGACTAGCCCGGTCCCCCCTACGCGCTGTTGATCTTACTGCTGTAAC
65 CATAATGCGCAAGTC-GGGGACCAGCCCGATCCCCCCTGCGTGCTGTCGATCCTATTGCTGTAAC
* * * * *
34290244 CCTCAGTGCGGTCCAATCTTAGACTAGGAATGAACTTCGTATGCCTAACTCGACCCACGAAATGA
129 CCTCAGTCCGATCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAACTCAACCCACAAAATGA
* * * * * * * *
34290309 GCATGCGGATGCTGAGCTAGTCGGAGAGGCATAATGCGTAAGTCGGGGATCGGCCCGATCCCCTT
194 GCATGCGGACGCTGAACCAGCCGGAGAGGCATAATGCGCAAGTCAGGGATCGACCCGATCCCCCT
* *
34290374 CTGCGTGCTGTCGATCCCGCTGCCACAACCTTCGATCCGACTGGGGCTTAGACATGGAATGAACT
259 CTGCATGCTGTCGATCCCGCTGCCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACT
** * * * * * *
34290439 TGCTATGCCTAAGCCAACCCACAAAATGGGCGTGCGGGTGCTCAGCCGTCTGGAGAGGTAGAATG
324 CCCTATCCCTAAGCCAACCCACAAAACGGGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATG
* * * * * * * * *
34290504 CGCAAGTCGGGGAGCGACCTGGTCCCCCCTACGTGCT-GCTGATCCTA-TTGTCGTAACCCTCGA
389 CGCAAGCCGAGGAGCGACCCGGTCCCCCCTACATGCTATC-GAT-CTAGCTGCCGCAAACCTCGA
** ** *
34290567 TCCTGTCTGA-CTTTAGATTGGGAATGAACTCCGTATGCTTAGACTAGGG
452 TCCAATCCAATC-TTAGATTGGAAATGAACTCCGTATGCTTAGACTAGGG
* *
34290616 ATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGTGCGCTCAGTTGGCCGGAGAGG
1 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCG-GCACTCAGTTGGCCGGAGAGG
* * *
34290681 CATAATGCGCAAGTCGGGGACCATCTCGATCCCCCCTGCATGCTGTCGATCCTATTGCTGTAACC
65 CATAATGCGCAAGTCGGGGACCAGCCCGATCCCCCCTGCGTGCTGTCGATCCTATTGCTGTAACC
* ** *
34290746 TTTGGTCCGATCCAATCTTAGAC-AGTGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGA
130 CTCAGTCCGATCCAATCTTAGACTAG-GAATGAACTCCGTATGCCTAACTCAACCCACAAAATGA
* * * * *
34290810 GCATTCGGGCGCTGAACCGGCCGGAGAGGCATAATGCGCAGAG-CAGGGATCGACTCGGTCCCCC
194 GCATGCGGACGCTGAACCAGCCGGAGAGGCATAATGCGCA-AGTCAGGGATCGACCCGATCCCCC
* ** * * **
34290874 TCTGCATGCTGTCGGTCCCGCTGTGACATCCCTCGGTCCGGTTGGGGCTTAGACATGGAATGAAC
258 TCTGCATGCTGTCGATCCCGCTGCCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAAC
**
34290939 TCCCTATCCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAAT
323 TCCCTATCCCTAAGCCAACCCACAAAACGGGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAAT
* * * * *
34291004 GTGCAAGCCGAGGATCGGCCCGGTCCCCCCTTCATGCTATCGATCTAGCTGCCGCAAACCTCGGT
388 GCGCAAGCCGAGGAGCGACCCGGTCCCCCCTACATGCTATCGATCTAGCTGCCGCAAACCTCGAT
*
34291069 CCAATCCAATCTTAGATTGGAAATGAACTCCGTATGCTTAGACTGGGG
453 CCAATCCAATCTTAGATTGGAAATGAACTCCGTATGCTTAGACTAGGG
* * * * * * *
34291117 ATGAACTCCGTATGCCTAAGTCAATCCACAAAACAAGCGTGTGGGCACTCAGTCGGCCTGAAAGG
1 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG-CGGCACTCAGTTGGCCGGAGAGG
* * * * *
34291182 CATAATGCGTAAGTCGGGTATCAGCCCGATCCCTCTCTGCGTGCTGTCGATCCTGTTGC
65 CATAATGCGCAAGTCGGGGACCAGCCCGATCCC-CCCTGCGTGCTGTCGATCCTATTGC
34291241 CGGTCTAGTT
Statistics
Matches: 518, Mismatches: 98, Indels: 17
0.82 0.15 0.03
Matches are distributed among these distances:
500 6 0.01
501 484 0.93
502 28 0.05
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.22
Consensus pattern (500 bp):
ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGCACTCAGTTGGCCGGAGAGGC
ATAATGCGCAAGTCGGGGACCAGCCCGATCCCCCCTGCGTGCTGTCGATCCTATTGCTGTAACCC
TCAGTCCGATCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAACTCAACCCACAAAATGAGC
ATGCGGACGCTGAACCAGCCGGAGAGGCATAATGCGCAAGTCAGGGATCGACCCGATCCCCCTCT
GCATGCTGTCGATCCCGCTGCCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCC
CTATCCCTAAGCCAACCCACAAAACGGGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCG
CAAGCCGAGGAGCGACCCGGTCCCCCCTACATGCTATCGATCTAGCTGCCGCAAACCTCGATCCA
ATCCAATCTTAGATTGGAAATGAACTCCGTATGCTTAGACTAGGG
Found at i:34291496 original size:26 final size:26
Alignment explanation
Indices: 34291446--34291498 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
34291436 CCGGTCCAAT
*
34291446 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAAATTCGTATG
34291472 CTTAGACAT-GGAATGAAA-TCTGTATG
1 CTTAGAC-TGGGAATGAAATTC-GTATG
34291498 C
1 C
34291499 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 2 0.08
26 21 0.88
27 1 0.04
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATTCGTATG
Found at i:34291984 original size:26 final size:26
Alignment explanation
Indices: 34291948--34292000 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
34291938 CCGATCCGAT
*
34291948 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
34291974 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
34292000 C
1 C
34292001 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34292084 original size:184 final size:185
Alignment explanation
Indices: 34291802--34292159 Score: 423
Period size: 184 Copynumber: 1.9 Consensus size: 185
34291792 TAGACATTGA
* * *
34291802 ATGAACTCCCTATGCCTAAGCCAACCCATGGAACGGGCGTGCGGGTGCTCAGTCGGCCGAAGAGG
1 ATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGTCGGCCGAAGAGG
* ** ** * ** *
34291867 CAGAATGCGTAAGCCAGAAATTGGCCCGGTCCCCCC-TGGGTGCTGTCGATCCTGTTGCCGCAAC
66 CAGAATGCATAAGCCAGAAACCGGCCCGGTCCCCCCTTGCATGCTGGCGATCCTACTACCGCAAC
* *
34291931 CCTTGATCCGATCCGATCTTAGACTGGGAATGAACTCCTTATGCTTAGATTGGGG
131 CCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGATTGGGG
* * *
34291986 ATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTTAGTCGGCC-AGAGAG
1 ATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGTCGGCCGA-AGAG
* ** ** * ** *
34292050 GCAGAATGCATAATCTGGGGACCGTCTTGGTCCCCCCTTGCATGCTGGCGATCCTACTATCGCAA
65 GCAGAATGCATAAGCCAGAAACCGGCCCGGTCCCCCCTTGCATGCTGGCGATCCTACTACCGCAA
* * * *
34292115 GCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
130 CCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGC
34292160 CTAAGTCAAC
Statistics
Matches: 142, Mismatches: 30, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
183 1 0.01
184 82 0.58
185 59 0.42
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.22
Consensus pattern (185 bp):
ATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGTCGGCCGAAGAGG
CAGAATGCATAAGCCAGAAACCGGCCCGGTCCCCCCTTGCATGCTGGCGATCCTACTACCGCAAC
CCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGATTGGGG
Found at i:34292210 original size:502 final size:501
Alignment explanation
Indices: 34291426--34293515 Score: 2095
Period size: 502 Copynumber: 4.2 Consensus size: 501
34291416 CTGCTATCGT
* * * *
34291426 AACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTTCGTATGCTTAGACAT-GGAATGAAA
1 AACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC-TGGGGATGAAC
* * *** *
34291490 TCTGTATGCCTAAGCCAACCCACGAAACGAGCATGCGAATGCTCAGTCGGTCGGAGAGGCAGAAT
65 TCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGTCGGTCAGAGAGGCAGAAT
* * * * * *
34291555 GCGTAAG-TCAGGGACCGGCCCAGTCCCCCCCTGTGC--GCTATCGATCCTA-T-TGCAGTAACC
130 GCGCAAGCT-AGGGACCGTCTCGGT-CCCCCCT-TGCATGCTGTCGATCCTACTAT-C-GCAACC
* * *
34291615 TTCGGT-TCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGTAACGA
190 CTCGGTCT-GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
* * * * * *
34291679 GCCTGCGGGCACTGAGCTGGTCGGAGAGGCATAATGCGTAAGCCGGGGATCGAC-CTGGTCCCCC
254 GCGTTCGGGAACTGAGCCGATCAGAGAGGCATAATGCGTAAGCCGGGGATCGACTC-GGTCCCCC
* * * * * *
34291743 TCTGTGTGTTACCGATCCCGCTACCACAACCCTC-GATTCGACTGGGGCTTAGACATTGAATGAA
318 TCTGCGTGCTGCCGATCCCGCTGCCACAACCCTCAG-TCCGACTGGGGCTTAGACATGGAATGAA
* *
34291807 CTCCCTATGCCTAAGCCAACCCATGGAACGGGCGTGCGGGTGCTCAGTCGGCCGAAGAGGCAGAA
382 CTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCAGCCGGCCGAAGAGGCAGAA
* * * * * *
34291872 TGCGTAAGCCAGAAATTGGCCCGGTCCCCCCTGGGTGCTGTCGATCCTGTTGCCGC
447 TGCGCAAGCCAGAGATCGACCCGGTCCCCCCT-CGTGCTGTCGATCCTGCTGCCGC
* * * * *
34291928 AACCCTTGATCCGATCCGATCTTAGACTGGGAATGAACTCCTTATGCTTAGATTGGGGATGAACT
1 AACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACT
* * * *
34291993 CCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTTAGTCGGCCAGAGAGGCAGAATG
66 CCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGTCGGTCAGAGAGGCAGAATG
** * * * * * *
34292058 CATAATCTGGGGACCGTCTTGGTCCCCCCTTGCATGCTGGCGATCCTACTATCGCAAGCCTCGAT
131 CGCAAGCTAGGGACCGTCTCGGTCCCCCCTTGCATGCTGTCGATCCTACTATCGCAACCCTCGGT
*
34292123 CTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTCG
196 CTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTCG
* * *
34292188 GGAACTGAGCCGATCAGAGAGGCATAATGCGCTAA-CCGGGGATCGACTCGGCCCCCCTCTACAT
261 GGAACTGAGCCGATCAGAGAGGCATAATGCG-TAAGCCGGGGATCGACTCGGTCCCCCTCTGCGT
* * *
34292252 GCTGTCGCTCCTGCTGCCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTAT
325 GCTGCCGATCCCGCTGCCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTAT
* ** * **
34292317 GCCTAAGCCAACCCATGAAACGTGATTGCGGGTGCTCAGCCGACCGAAGAGATAGAATGCGCAAG
390 GCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCAGCCGGCCGAAGAGGCAGAATGCGCAAG
** * * * **
34292382 CC-GAGGATCGACCCAATCCCCCCTACATACTGCCGATCCTGCTGCCAT
455 CCAGA-GATCGACCCGGTCCCCCCT-CGTGCTGTCGATCCTGCTGCCGC
* * * * *
34292430 AACCCTCGGTCTGATCCGATCTTAGATTGGGAATGAACTCCGTATACTTAGACTGGGGATGAGCT
1 AACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACT
* * * * *
34292495 CCATATGCCTAAGTCAACCCACAAAACGAGCATGCGGGCACTCAGTCAGTCGGAGAGGCAGAATG
66 CCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGTCGGTCAGAGAGGCAGAATG
* * * * * * * ** *
34292560 CGCAAGCTGGGGACCGACTCGATCCCTCCGTGCATGCTGTCGATCTTGCTGCCGCAACCCTTGGT
131 CGCAAGCTAGGGACCGTCTCGGTCCCCCCTTGCATGCTGTCGATCCTACTATCGCAACCCTCGGT
* * * *
34292625 TTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCGAATTCAACCCATGAAACGAGCGTTC-
196 CTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTCG
** * * * * * * *
34292689 TTACGCTGAGCC-AGCCAGAGAGGCATAATACGTATGCCGGGGATC-AGCCCGATCCCCCTTTGC
261 GGA-ACTGAGCCGA-TCAGAGAGGCATAATGCGTAAGCCGGGGATCGA-CTCGGTCCCCCTCTGC
* * *
34292752 GTG-TTCCCAGTCCTGCTGCCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCC
323 GTGCTGCCGA-TCCCGCTGCCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCC
** * * * *
34292816 TATGCCTAAGCCAACCCACAAAATGGGCGTGCGGGCGCTCAGCCGTCCGGAGAGGCAGAATGCGC
387 TATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCAGCCGGCCGAAGAGGCAGAATGCGC
** * * * * * *
34292881 AAGCTGGGGAGCGGCCTGGT-CTCCC-C-AGC-GT-G---CTG-T--CGC
452 AAGCCAGAGATCGACCCGGTCCCCCCTCGTGCTGTCGATCCTGCTGCCGC
* * * *
34292920 AACCTTCAGTTCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTT-GACTGGGGATGAACT
1 AACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACT
* * * * * * * * *
34292984 CCATATGCTTAAGTGAACCTACGAAATGAGCGTACGGGCGCTCAGTCGGTCAAAGAGGTAGAATG
66 CCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGTCGGTCAGAGAGGCAGAATG
* * * * *
34293049 CGCAAGCCAAGGACCGT-TCCGGTCCTCTCC-TGCATGCTGTCGATCCTGCTATCGTAACCCTCG
131 CGCAAGCTAGGGACCGTCT-CGGTCC-CCCCTTGCATGCTGTCGATCCTACTATCGCAACCCTCG
* * *
34293112 GTCTGGTCCGATCTTAGACTGTGAATGAACTCCGTATGCCTAAGTCAACTCACGAAATGAGCGTT
194 GTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTT
** * * * * *
34293177 CGGGCGCTGAGTCGA-CCGAGGAGGCATAATGC--ACAGACCGGGGATTGACTCAGTCCCTCTCT
259 CGGGAACTGAGCCGATCAGA-GAGGCATAATGCGTA-AG-CCGGGGATCGACTCGGTCCCCCTCT
* * * * * *
34293239 GCGTGCTGCTGGTCTCGCT-CCACAACCCTCGGTTCGGCTGGGGCTTAGACATGGAATGAACTCC
321 GCGTGCTGCCGATCCCGCTGCCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCC
* * * * * * * * * *
34293303 CTATGCCTAAGCCAACTCGTGAAATGGGCATGCGGGTGCTCAGTCGGTCGGAGACGTAGAATACG
386 CTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCAGCCGGCCGAAGAGGCAGAATGCG
* * * ** * * **
34293368 TAAGCCAGGGATCGACTCGGTCCCCTATTCGTGCTATCGATCCTACTATCGC
451 CAAGCCAGAGATCGACCCGGTCCCC-CCTCGTGCTGTCGATCCTGCTGCCGC
* *
34293420 AACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGGATGAACT
1 AACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACT
* *
34293485 CCGTATGCCTAAGTAAACCCACGAAATGAGC
66 CCGTATGCCTAAGTCAACCCACGAAACGAGC
34293516 CTACGAGCGC
Statistics
Matches: 1303, Mismatches: 246, Indels: 79
0.80 0.15 0.05
Matches are distributed among these distances:
487 1 0.00
488 114 0.09
489 219 0.17
490 50 0.04
491 1 0.00
492 3 0.00
493 4 0.00
494 1 0.00
496 1 0.00
497 3 0.00
498 2 0.00
499 1 0.00
500 49 0.04
501 63 0.05
502 780 0.60
503 10 0.01
504 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (501 bp):
AACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACT
CCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGTCGGTCAGAGAGGCAGAATG
CGCAAGCTAGGGACCGTCTCGGTCCCCCCTTGCATGCTGTCGATCCTACTATCGCAACCCTCGGT
CTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTCG
GGAACTGAGCCGATCAGAGAGGCATAATGCGTAAGCCGGGGATCGACTCGGTCCCCCTCTGCGTG
CTGCCGATCCCGCTGCCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATG
CCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCAGCCGGCCGAAGAGGCAGAATGCGCAAGC
CAGAGATCGACCCGGTCCCCCCTCGTGCTGTCGATCCTGCTGCCGC
Found at i:34292296 original size:159 final size:159
Alignment explanation
Indices: 34291973--34292474 Score: 390
Period size: 159 Copynumber: 3.2 Consensus size: 159
34291963 AACTCCTTAT
* * ** *
34291973 GCTTAGATTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTTAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGAACTGAG
* * * * * *
34292038 TCGGCCAGAGAGGCAGAATGCATAATCTGGGGACCGTCTTGGTCCCCCCTTGCATGCTGGCGATC
66 CCGACCAGAGAGGCAGAATGCATAATCCGGGGACCGACTCGGTCCCCCCTTACATGCTGGCGATC
* * * * *
34292103 CTACTATCGCAAGCCTCGATCTGGTCTGA
131 CTACTACCACAACCCTCGATCTCGACTGA
* * *
34292132 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTCGGGAACTGAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGAACTGAG
* * * * * *
34292197 CCGATCAGAGAGGCATAATGCGCTAA-CCGGGGATCGACTCGG-CCCCCCTCTACATGCTGTCGC
66 CCGACCAGAGAGGCAGAATGC-ATAATCCGGGGACCGACTCGGTCCCCCCT-TACATGCTGGCGA
* * *
34292260 TCCTGCTGCCACAACCCTC-AGTC-CGACTGGG
129 TCCTACTACCACAACCCTCGA-TCTCGACT-GA
* * * ** ** *
34292291 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGTGATTGCGGGTGCTCA
1 GCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGAACTGA
** ** * * * * ** * *
34292355 GCCGACC-GAAGAGATAGAATGCGCAAGCCGAGGATCGACCCAATCCCCCC-TACATACTGCCGA
65 GCCGACCAG-AGAGGCAGAATGCATAATCCGGGGACCGACTCGGTCCCCCCTTACATGCTGGCGA
* * * * *
34292418 TCCTGCTGCCATAACCCTCGGTCT-GATCCGA
129 TCCTACTACCACAACCCTCGATCTCGA-CTGA
* *
34292449 TCTTAGATTGGGAATGAACTCCGTAT
1 GCTTAGACTGGGAATGAACTCCGTAT
34292475 ACTTAGACTG
Statistics
Matches: 272, Mismatches: 59, Indels: 25
0.76 0.17 0.07
Matches are distributed among these distances:
157 1 0.00
158 68 0.25
159 193 0.71
160 10 0.04
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.21
Consensus pattern (159 bp):
GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGAACTGAG
CCGACCAGAGAGGCAGAATGCATAATCCGGGGACCGACTCGGTCCCCCCTTACATGCTGGCGATC
CTACTACCACAACCCTCGATCTCGACTGA
Found at i:34292980 original size:25 final size:25
Alignment explanation
Indices: 34292944--34292993 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
34292934 TCCGATCTTA
34292944 GACTGGGAATGAACTCCATATGCTT
1 GACTGGGAATGAACTCCATATGCTT
*
34292969 GACTGGGGATGAACTCCATATGCTT
1 GACTGGGAATGAACTCCATATGCTT
34292994 AAGTGAACCT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28
Consensus pattern (25 bp):
GACTGGGAATGAACTCCATATGCTT
Found at i:34293476 original size:26 final size:26
Alignment explanation
Indices: 34293440--34293492 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34293430 CCGGTCTGAT
*
34293440 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
34293466 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
34293492 C
1 C
34293493 CTAAGTAAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34294547 original size:26 final size:26
Alignment explanation
Indices: 34294518--34294570 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34294508 TCGATCTGAT
*
34294518 CTTAGACT-GGGAATGAACTTCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
34294544 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
34294570 C
1 C
34294571 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:34301934 original size:26 final size:26
Alignment explanation
Indices: 34301905--34301957 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
34301895 CTGGTCCAAT
* *
34301905 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATAAACTCCGTATG
34301931 CTTAGACATGGAATAAACTCCGTATG
1 CTTAGACATGGAATAAACTCCGTATG
34301957 C
1 C
34301958 CTAGGCGAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATAAACTCCGTATG
Found at i:34303423 original size:26 final size:26
Alignment explanation
Indices: 34303393--34303445 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34303383 GTTGGGTTAG
*
34303393 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACAGAGTTCATTCCTA-GTCTAA
34303419 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
34303445 G
1 G
34303446 ATCGGATTAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:34303626 original size:26 final size:26
Alignment explanation
Indices: 34303590--34303642 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34303580 GTTGGCTTAG
*
34303590 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCAAGTCTAA
*
34303616 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATCCCAAGTCTAA
34303642 G
1 G
34303643 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCAAGTCTAA
Found at i:34303673 original size:197 final size:197
Alignment explanation
Indices: 34303317--34303674 Score: 513
Period size: 197 Copynumber: 1.8 Consensus size: 197
34303307 NNNNNGATCG
* **
34303317 GGTCGATCCTCGGCTTACGCATTCTACCTCTCTGATCGGTTGAGCGCCCGTACACTCGTTTCATG
1 GGTCGATCCTCGACTTACGCATTCTACCTCTCTGATCGGTTGAGCGCCCACACACTCGTTTCATG
* * *
34303382 GGTTGGGTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCTAGTCTAAGA
66 GGTTGGCTTAGGCATACGGAGTTCATCCCATGTCTAAGCATACAGAGTTCATTCCAAGTCTAAGA
* ** ** *
34303447 TCGGATTAGTTCGAAGGTTCTGACAGCAGGACCAGCAGCAGGATCGATAGCTCACAGGGGGGGAC
131 TCAGACCAGACCGAAGGTTATGACAGCAGGACCAGCAGCAGGATCGATAGCTCACAGGGGGGGAC
34303512 CA
196 CA
* * **
34303514 GGTCGATCCTCGACTTATGCATTCTGCCTCTCCTG-TCGGTTGAGCGCCCACACACTCGTTTTGT
1 GGTCGATCCTCGACTTACGCATTCTACCTCT-CTGATCGGTTGAGCGCCCACACACTCGTTTCAT
*
34303578 GGGTTGGCTTAGGCATACGGAGTTCATCCCCA-GTCTAAGCATACGGAGTTCATTCCAAGTCTAA
65 GGGTTGGCTTAGGCATACGGAGTTCAT-CCCATGTCTAAGCATACAGAGTTCATTCCAAGTCTAA
* *
34303642 GATCAGACCAGACCGAGGGTTATGGCAGCAGGA
129 GATCAGACCAGACCGAAGGTTATGACAGCAGGA
34303675 TCGACAGCAC
Statistics
Matches: 140, Mismatches: 19, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
197 134 0.96
198 6 0.04
ACGTcount: A:0.22, C:0.25, G:0.27, T:0.26
Consensus pattern (197 bp):
GGTCGATCCTCGACTTACGCATTCTACCTCTCTGATCGGTTGAGCGCCCACACACTCGTTTCATG
GGTTGGCTTAGGCATACGGAGTTCATCCCATGTCTAAGCATACAGAGTTCATTCCAAGTCTAAGA
TCAGACCAGACCGAAGGTTATGACAGCAGGACCAGCAGCAGGATCGATAGCTCACAGGGGGGGAC
CA
Found at i:34304671 original size:26 final size:26
Alignment explanation
Indices: 34304635--34304687 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
34304625 GTTGACTTAG
34304635 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
34304661 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
34304687 G
1 G
34304688 ATCAGACTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:34305056 original size:159 final size:156
Alignment explanation
Indices: 34304661--34305161 Score: 442
Period size: 158 Copynumber: 3.2 Consensus size: 156
34304651 CCCAGTCTAA
* * *
34304661 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGACTAGACCGAGGGTTGTGACAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGAC--GAACGAGGGTTGTGACAGTAGGATCGAT
* * * *
34304725 AGCACGCAGG-GGGGACTGGG-TCGATCCCCGGCTTGTGCATTCTGCCTCTCCGACCGACTGAGC
63 AGCACGTAGGAGGGGACCGGGCT-GATCCCCGGCTTGCGCATTCTGCCTCTCCGA-CGGCTGAGC
* ** * *
34304788 ACCCGCACACCCGTTT-TGTGGGTTGGCTTA-
126 ACCCACATGCTCATTTCT-TGGGTTGGCTTAG
* * ** * * * * * *
34304818 ACATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACTGAGGGTTGTGGCAGTGGGACCGGTA
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGACGAAC-GAGGGTTGTGACAGTAGGATCGATA
* * * * * *
34304883 GCACGCT-GAAGGGGACCGGGCTGATCCTCGACTTACGCATTATGCCTCTCCGATCGGCTCAGCA
64 GCACG-TAGGAGGGGACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGA-CGGCTGAGCA
*
34304947 CCCACATGCTCATTTCTTGGGTTGACTTAG
127 CCCACATGCTCATTTCTTGGGTTGGCTTAG
* * * *
34304977 GCATACGGAGTTCATTCCCA-GTCTAAGATCTGGCCGAATCGAGGGTTGCGATAGTAGGATCGAT
1 GCATACGGAGTTCATT-CCATGTCTAAGATC-AGACGAA-CGAGGGTTGTGACAGTAGGATCGAT
** * * * *
34305041 AGCACGTAGGAGGGGACACGATC-GATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGTTGAACG
63 AGCACGTAGGAGGGGAC-CGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGACGGCTGAGCA
* * *
34305105 CCCACATGCTCATTTCGTAGGCTGGCTTAG
127 CCCACATGCTCATTTCTTGGGTTGGCTTAG
34305135 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
34305162 CATACGGAGT
Statistics
Matches: 271, Mismatches: 59, Indels: 27
0.76 0.17 0.08
Matches are distributed among these distances:
156 5 0.02
157 49 0.18
158 124 0.46
159 86 0.32
160 7 0.03
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACGAACGAGGGTTGTGACAGTAGGATCGATAGC
ACGTAGGAGGGGACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGACGGCTGAGCACCCA
CATGCTCATTTCTTGGGTTGGCTTAG
Found at i:34305171 original size:26 final size:26
Alignment explanation
Indices: 34305135--34305187 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34305125 GCTGGCTTAG
34305135 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
34305161 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
34305187 G
1 G
34305188 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:34305367 original size:26 final size:26
Alignment explanation
Indices: 34305331--34305383 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
34305321 GTTGGCTTAG
*
34305331 GCATACGGAGTTC-ATTCCACGTCTAA
1 GCATACGGAGTTCAATCCCA-GTCTAA
*
34305357 GCATATGGAGTTCAATCCCAGTCTAA
1 GCATACGGAGTTCAATCCCAGTCTAA
34305383 G
1 G
34305384 ATCAAACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCAATCCCAGTCTAA
Found at i:34305378 original size:196 final size:196
Alignment explanation
Indices: 34305028--34305415 Score: 492
Period size: 196 Copynumber: 2.0 Consensus size: 196
34305018 AGGGTTGCGA
* * * * * * *
34305028 TAGTAGGATCGATAGCACGTAGGAGGGGACACGATCGATCCCCGGCTTGCGCATTCTGCCTCTCC
1 TAGTAGGATCAACAGCACGGAGGAGGGGACACGATCGATCCCCGACTTACGCATTCTACCTCACC
* *
34305093 GACCGTTGAACGCCCACATGCTCATTTCGTAGGCTGGCTTAGGCATACGGAGTTCATTCCATGTC
66 GACCGTTGAACGCCCACACGCTCATTTCGTAGGCTGGCTTAGGCATACGGAGTTCATTCCACGTC
* * * * * *
34305158 TAAGCATACGGAGTTTATTCCCAGTCTAAGATCAGACTGGACTGAGAGTTACGGTAGCAGGACCA
131 TAAGCATACGGAGTTCAATCCCAGTCTAAGATCAAACCGGAATGAGAGTTACAGTAGCAGGACCA
34305223 G
196 G
* *
34305224 TAGTAGGATCAACAGCACGGA-GAGGGGACCATG-TCGATCCCCGACTTACGTATTCTACCTCAC
1 TAGTAGGATCAACAGCACGGAGGAGGGGA-CACGATCGATCCCCGACTTACGCATTCTACCTCAC
* ** * * * * *
34305287 CGATCGGTTGAGTGCCCGCACGCTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCACG
65 CGA-CCGTTGAACGCCCACACGCTCATTTCGTAGGCTGGCTTAGGCATACGGAGTTCATTCCACG
* * *
34305352 TCTAAGCATATGGAGTTCAATCCCAGTCTAAGATCAAACCGGAATGAGGGTTGCAGTAGCAGGA
129 TCTAAGCATACGGAGTTCAATCCCAGTCTAAGATCAAACCGGAATGAGAGTTACAGTAGCAGGA
34305416 TCAGCAGCAC
Statistics
Matches: 162, Mismatches: 28, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
195 35 0.22
196 127 0.78
ACGTcount: A:0.24, C:0.25, G:0.27, T:0.24
Consensus pattern (196 bp):
TAGTAGGATCAACAGCACGGAGGAGGGGACACGATCGATCCCCGACTTACGCATTCTACCTCACC
GACCGTTGAACGCCCACACGCTCATTTCGTAGGCTGGCTTAGGCATACGGAGTTCATTCCACGTC
TAAGCATACGGAGTTCAATCCCAGTCTAAGATCAAACCGGAATGAGAGTTACAGTAGCAGGACCA
G
Found at i:34305701 original size:146 final size:146
Alignment explanation
Indices: 34305487--34306019 Score: 476
Period size: 146 Copynumber: 3.6 Consensus size: 146
34305477 GCTAAGCGCT
* * ** *
34305487 CGCACG-CTCATTTCGTGGGTTGGCTTGGGCATACGAAGTTCATTCCATGTCTAAGCCCCAGTCA
1 CGCACGTC-CATTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAACCCCAACCG
* * *
34305551 GACCGAGGGTTGTGGCAGTACGCAGGGGGGACCGGGCCGATCCTTGGCTTACGTGTTCTACCTCT
65 GACCGAGGGTTGTGGCAGTACGCAGGAGGGACCGGGCCGATCCTCGGCTTACGTATTCTACCTCT
*
34305616 TCGGTCGACTGAGCATT
130 TCGGTCGACTGAGCATC
* * * * * *
34305633 CGTACGTCCATTTCATGGGTTGACTTAGGCATAGGGAGTTCATTCCATGTCTAAACCACAACCGG
1 CGCACGTCCATTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAACCCCAACCGG
* * * * * *
34305698 ACCGAGGGTCGTGGCCGCGGGATCGACAGCAACCAGAGAGGGATCGGGCCTATCCCCGGCTTGCG
66 ACCGAGGGTTGT-G--GC-AG-T--AC-G----CAG-GAGGGACCGGGCCGATCCTCGGCTTACG
* * * * **
34305763 TATTATCCCTCTCCGGTCGACTCAGTGTC
118 TATTCTACCTCTTCGGTCGACTGAGCATC
* * **
34305792 CACACG-CTCATTTCGTGGGTTGGCTTTGGCATACGAAGTTCATTCCACATCTAAACCCCAACCG
1 CGCACGTC-CATTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAACCCCAACCG
* * * * * * * *
34305856 GACTGAGGGTTATGGCAGCATGCAGGTGGGACCGGGCCGATCCTCGACTTACGCATTCTGCCTCT
65 GACCGAGGGTTGTGGCAGTACGCAGGAGGGACCGGGCCGATCCTCGGCTTACGTATTCTACCTCT
*
34305921 TCGGTCGACTGAGCACC
130 TCGGTCGACTGAGCATC
* * ** * * *
34305938 CGCACGTCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCACATCTAAGCCCCAGCCAG
1 CGCACGTCCATTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAACCCCAACCGG
* *
34306003 ACCCAGGGTTGTCGCAG
66 ACCGAGGGTTGTGGCAG
34306020 CAGGACCGGC
Statistics
Matches: 303, Mismatches: 68, Indels: 32
0.75 0.17 0.08
Matches are distributed among these distances:
146 175 0.58
147 6 0.02
149 2 0.01
150 1 0.00
151 2 0.01
152 1 0.00
153 2 0.01
154 1 0.00
155 1 0.00
156 2 0.01
158 5 0.02
159 105 0.35
ACGTcount: A:0.19, C:0.29, G:0.28, T:0.24
Consensus pattern (146 bp):
CGCACGTCCATTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAACCCCAACCGG
ACCGAGGGTTGTGGCAGTACGCAGGAGGGACCGGGCCGATCCTCGGCTTACGTATTCTACCTCTT
CGGTCGACTGAGCATC
Found at i:34306060 original size:305 final size:305
Alignment explanation
Indices: 34305489--34306080 Score: 774
Period size: 305 Copynumber: 1.9 Consensus size: 305
34305479 TAAGCGCTCG
** * **
34305489 CACGCTCATTTCGTGGGTTGGCTTGGGCATACGAAGTTCATTCCATGTCTAAGCCCCAGTCAGAC
1 CACGCTCATTTCGTGGGTTGGCTTGGGCATACGAAGTTCATTCCACATCTAAACCCCAACCAGAC
* * * * **
34305554 CGAGGGTTGTGGCAGTACGCAGGGGGGACCGGGCCGATCCTTGGCTTACGTGTTCTACCTCTTCG
66 CGAGGGTTATGGCAGCACGCAGGGGGGACCGGGCCGATCCTCGACTTACGCATTCTACCTCTTCG
** * **
34305619 GTCGACTGAGCATTCGTACGTCCATTTCATGGGTTGACTTAGGCATAGGGAGTTCATTCCATGTC
131 GTCGACTGAGCACCCGCACGTCCATTTCATGGGTTGACTTAGGCATAGGGAGTTCATTCCACATC
* * * * * * *
34305684 TAAACCACAACCGGACCGAGGGTCGTGGCCGCGGGATCGACAGCAACCAGAGAGGGATCGGGCCT
196 TAAACCACAACCAGACCCAGGGTCGTCGCAGCAGGACCGACAGCAACCAGAGAGGGACCGGGCCT
* * *
34305749 ATCCCCGGCTTGCGTATTATCCCTCTCCGGTCGACTCAGTGTCCA
261 ATCCCCGACTTACGCATTATCCCTCTCCGGTCGACTCAGTGTCCA
* *
34305794 CACGCTCATTTCGTGGGTTGGCTTTGGCATACGAAGTTCATTCCACATCTAAACCCCAACCGGAC
1 CACGCTCATTTCGTGGGTTGGCTTGGGCATACGAAGTTCATTCCACATCTAAACCCCAACCAGAC
* * * *
34305859 TGAGGGTTATGGCAGCATGCAGGTGGGACCGGGCCGATCCTCGACTTACGCATTCTGCCTCTTCG
66 CGAGGGTTATGGCAGCACGCAGGGGGGACCGGGCCGATCCTCGACTTACGCATTCTACCTCTTCG
* *
34305924 GTCGACTGAGCACCCGCACGTCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCACATC
131 GTCGACTGAGCACCCGCACGTCCATTTCATGGGTTGACTTAGGCATAGGGAGTTCATTCCACATC
* * * * * * *
34305989 TAAGCCCCAGCCAGACCCAGGGTTGTCGCAGCAGGACCGGCAGC-ACGCAGAGGGGGACCGGG-T
196 TAAACCACAACCAGACCCAGGGTCGTCGCAGCAGGACCGACAGCAAC-CAGAGAGGGACCGGGCC
*
34306052 TGATCCCCGACTTACGCATTATGCCTCTC
260 T-ATCCCCGACTTACGCATTATCCCTCTC
34306081 TGACTGACTG
Statistics
Matches: 243, Mismatches: 42, Indels: 4
0.84 0.15 0.01
Matches are distributed among these distances:
304 3 0.01
305 240 0.99
ACGTcount: A:0.19, C:0.29, G:0.29, T:0.23
Consensus pattern (305 bp):
CACGCTCATTTCGTGGGTTGGCTTGGGCATACGAAGTTCATTCCACATCTAAACCCCAACCAGAC
CGAGGGTTATGGCAGCACGCAGGGGGGACCGGGCCGATCCTCGACTTACGCATTCTACCTCTTCG
GTCGACTGAGCACCCGCACGTCCATTTCATGGGTTGACTTAGGCATAGGGAGTTCATTCCACATC
TAAACCACAACCAGACCCAGGGTCGTCGCAGCAGGACCGACAGCAACCAGAGAGGGACCGGGCCT
ATCCCCGACTTACGCATTATCCCTCTCCGGTCGACTCAGTGTCCA
Found at i:34306157 original size:26 final size:26
Alignment explanation
Indices: 34306127--34306177 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
34306117 TGGGTTAGGC
*
34306127 ATACGGAGTTCGTTC-CATGTCTAAGT
1 ATACGGAGTTCATTCACA-GTCTAAGT
34306153 ATACGGAGTTCATTCACAGTCTAAG
1 ATACGGAGTTCATTCACAGTCTAAG
34306178 ATCAGATCGG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.31
Consensus pattern (26 bp):
ATACGGAGTTCATTCACAGTCTAAGT
Found at i:34306358 original size:26 final size:26
Alignment explanation
Indices: 34306321--34306373 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34306311 GTTGGTTTAG
*
34306321 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
34306347 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
34306373 G
1 G
34306374 ATTGAATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:34306580 original size:12 final size:12
Alignment explanation
Indices: 34306565--34306595 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
34306555 GCAGCAGGAC
34306565 CGACAGCGGGAT
1 CGACAGCGGGAT
34306577 CGACAGCGGGAT
1 CGACAGCGGGAT
34306589 CGACAGC
1 CGACAGC
34306596 ATGCGGAGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.26, C:0.29, G:0.39, T:0.06
Consensus pattern (12 bp):
CGACAGCGGGAT
Found at i:34308562 original size:26 final size:26
Alignment explanation
Indices: 34308525--34308577 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34308515 GTTGACTTAG
34308525 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
34308551 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
34308577 G
1 G
34308578 ATCAGATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:34308932 original size:159 final size:159
Alignment explanation
Indices: 34308551--34308945 Score: 431
Period size: 159 Copynumber: 2.5 Consensus size: 159
34308541 CCCAGTCTAA
* * *
34308551 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATTGGA-TCGAGGGTTGCGGCAGCACGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACT-GAGGGTTGTGGCAGCAGGATCGAC
* * * * * *
34308615 AGCACGCAG-GAGGGATCGGACCGATCCCCGGCTTACGCATTTTGCCTCTCTGATCGGTTGAGCA
65 AGCACGCAGAGGGGGATCGGACCGATCCCCAGCTTACGCATTATGCCTCTCCGATCGGCTCAGCA
* *
34308679 CCTGCACACCCGTTTCATGGGTTGGCTTAG
130 CCTGCACACCCATTTCATGGGTTGACTTAG
** ** * * * *
34308709 GCATGGGGAGTTCATT-CCATGTCTAAGCCCCAG-TCAGACCGAGGGTTGTGGCAGCGGGACCGA
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGATCGGACTGAGGGTTGTGGCAGCAGGATCGA
* ** *
34308772 CAGCACACAGAGGGGGA-CTGGGTCGATCCCCAGTTTACGCATTATGCCTCTCCGATCGGCTCAG
64 CAGCACGCAGAGGGGGATC-GGACCGATCCCCAGCTTACGCATTATGCCTCTCCGATCGGCTCAG
** * *
34308836 TGCCTGCACGCTCATTTCATGGGTTGACTTAG
128 CACCTGCACACCCATTTCATGGGTTGACTTAG
* ** *
34308868 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACTGAGGGTTGTGATAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTGTGGCAGCAGGATCGACA
*
34308933 GCACGTAGAGGGG
66 GCACGCAGAGGGG
34308946 ACCAGGCCGA
Statistics
Matches: 189, Mismatches: 41, Indels: 13
0.78 0.17 0.05
Matches are distributed among these distances:
157 3 0.02
158 55 0.29
159 128 0.68
160 3 0.02
ACGTcount: A:0.21, C:0.26, G:0.31, T:0.23
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTGTGGCAGCAGGATCGACA
GCACGCAGAGGGGGATCGGACCGATCCCCAGCTTACGCATTATGCCTCTCCGATCGGCTCAGCAC
CTGCACACCCATTTCATGGGTTGACTTAG
Found at i:34314737 original size:26 final size:26
Alignment explanation
Indices: 34314701--34314753 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
34314691 GTTGGCTTAG
34314701 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATATGGAGTTCATTCCCA-GTCTAA
34314727 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
34314753 G
1 G
34314754 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:34314927 original size:26 final size:26
Alignment explanation
Indices: 34314897--34314949 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34314887 GTTGGCTTAG
*
34314897 GCATATTGAGTTCATT-CCATGTCTAA
1 GCATATGGAGTTCATTCCCA-GTCTAA
34314923 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
34314949 G
1 G
34314950 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.34
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:34315302 original size:26 final size:26
Alignment explanation
Indices: 34315266--34315318 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
34315256 ATTGACTTAG
34315266 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* * * *
34315292 GCATATGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
34315318 G
1 G
34315319 ATCAAACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:34315795 original size:26 final size:26
Alignment explanation
Indices: 34315766--34315818 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
34315756 GTTGGCTGAG
*
34315766 GCATACAGAGTTTATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
34315792 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
34315818 G
1 G
34315819 ATTGGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:34315877 original size:24 final size:24
Alignment explanation
Indices: 34315845--34315894 Score: 73
Period size: 24 Copynumber: 2.1 Consensus size: 24
34315835 CCGAAGGTTA
* *
34315845 CGGTAGCAGGACTAGTAGCAAGAT
1 CGGTAGCAGGACCAGCAGCAAGAT
*
34315869 CGGTAGCAGGACCAGCAGCAGGAT
1 CGGTAGCAGGACCAGCAGCAAGAT
34315893 CG
1 CG
34315895 ACAGCATGCA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.30, C:0.22, G:0.36, T:0.12
Consensus pattern (24 bp):
CGGTAGCAGGACCAGCAGCAAGAT
Found at i:34315900 original size:24 final size:24
Alignment explanation
Indices: 34315849--34315900 Score: 59
Period size: 24 Copynumber: 2.2 Consensus size: 24
34315839 AGGTTACGGT
* * **
34315849 AGCAGGACTAGTAGCAAGATCGGT
1 AGCAGGACCAGCAGCAAGATCGAC
*
34315873 AGCAGGACCAGCAGCAGGATCGAC
1 AGCAGGACCAGCAGCAAGATCGAC
34315897 AGCA
1 AGCA
34315901 TGCAGGGGGG
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.35, C:0.23, G:0.33, T:0.10
Consensus pattern (24 bp):
AGCAGGACCAGCAGCAAGATCGAC
Found at i:34316830 original size:158 final size:154
Alignment explanation
Indices: 34316425--34316858 Score: 418
Period size: 158 Copynumber: 2.8 Consensus size: 154
34316415 GTTGTGGTAG
* * **
34316425 CAGGATCGACAGCACGCAGGGGCGATCAAG-TCGATCCTCGGCTTGCGCAGTTTGCCTCTCCGGT
1 CAGGATCGACAGCACGCAGGGGGGACCGGGCT-GATCCTCGG-TTGCGCA-TTTGCCTCTCCGGT
* * * * * *
34316489 TGGTTAAGTGCCCGCACGC-C-TCTTCCTGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTC
63 CGGTTAAGTGCCCGCACGCTCGT-TTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCATATA
* *
34316551 TAAGCCCTAGTCAGACCGAGGGTCACAG
127 TAAGACCTAGTCAGACCGAGGGTCACAA
* * * * *
34316579 CAGGACCGACAGCACGCAGAGGGGGACCGGGCCGATCCTCGACTTGCAG-A--TGCCTCTTCGAT
1 CAGGATCGACAGCACGCAG-GGGGGACCGGGCTGATCCTCG-GTTGC-GCATTTGCCTCTCCGGT
* * * *
34316641 CGGCTCAGTGCCCGCACGCTCGTTTCATGGGTTAACTTATGCATACGGAGTTCATTCCCA-ATAT
63 CGGTTAAGTGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCATATAT
* * *
34316705 AAGATC-AGATCGGACCGAGAGTTGCAGCAA
128 AAGACCTAG-TCAGACCGAG-GGT-CA-CAA
*
34316735 CAGGATCGACAGCACGCAGGGGGGACCGGGCTGATCCCCTGGTTGCGCATTCTGCCTCTCCGGTC
1 CAGGATCGACAGCACGCAGGGGGGACCGGGCTGATCCTC-GGTTGCGCATT-TGCCTCTCCGGTC
* * * * *
34316800 GGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCA
64 GGTTAAGTGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA
34316859 GTCTAAGCAT
Statistics
Matches: 226, Mismatches: 38, Indels: 28
0.77 0.13 0.10
Matches are distributed among these distances:
152 28 0.12
153 44 0.19
154 25 0.11
155 45 0.20
156 22 0.10
158 62 0.27
ACGTcount: A:0.19, C:0.29, G:0.29, T:0.22
Consensus pattern (154 bp):
CAGGATCGACAGCACGCAGGGGGGACCGGGCTGATCCTCGGTTGCGCATTTGCCTCTCCGGTCGG
TTAAGTGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCATATATAAG
ACCTAGTCAGACCGAGGGTCACAA
Found at i:34316996 original size:184 final size:184
Alignment explanation
Indices: 34316681--34317050 Score: 494
Period size: 184 Copynumber: 2.0 Consensus size: 184
34316671 GTTAACTTAT
* *
34316681 GCATACGGAGTTCATTCCCAATATAAGATCAGATCGGACCGAGAGTTGCAGCAACAGGATCGACA
1 GCATACGGAGTTCATTCCCAATATAAGATCAGATCGGACCGAGAGTTACAGCAACAGAATCGACA
* * *
34316746 GCACGCAGGGGGGACCGGGCTGATCCCCTGGTTGCGCATTCTGCCTCTCCGGTCGGTTGAGCGCC
66 GCACGCAGGGGGGACCGGGCTAATCCCCTGGTTGCGCATCCTGCCTCTCCGGCCGGTTGAGCGCC
*
34316811 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCA-GTCTAA
131 CGCACGCCCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCAT-CCCATGTCTAA
* * * * * * *
34316865 GCATATGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTACGGCAGCAGAATCGATA
1 GCATACGGAGTTCATTCCCAATATAAGATCAGATCGGACCGAGAGTTACAGCAACAGAATCGACA
* * **
34316930 GCACGCAGGGGGGATCGGG-TCAATCCTC-GGCTTGCGCATCCTTTCTCTCCGGCCGGTTGAGCG
66 GCACGCAGGGGGGACCGGGCT-AATCCCCTGG-TTGCGCATCCTGCCTCTCCGGCCGGTTGAGCG
* * ** *
34316993 CCCGTACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
129 CCCGCACGCCCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCATGTCTAA
34317049 GC
1 GC
34317051 CCCAACCAGA
Statistics
Matches: 161, Mismatches: 22, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
183 6 0.04
184 155 0.96
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (184 bp):
GCATACGGAGTTCATTCCCAATATAAGATCAGATCGGACCGAGAGTTACAGCAACAGAATCGACA
GCACGCAGGGGGGACCGGGCTAATCCCCTGGTTGCGCATCCTGCCTCTCCGGCCGGTTGAGCGCC
CGCACGCCCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCATGTCTAA
Found at i:34317295 original size:501 final size:493
Alignment explanation
Indices: 34316308--34317394 Score: 1334
Period size: 501 Copynumber: 2.2 Consensus size: 493
34316298 CTTCGGCCGA
* * * * *
34316308 CTGAGCACCCACACACTCGTTTTGTGGATTGACTTAGGCATACGGAGTTCATATCCAGTCTAAGC
1 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT-TCCAGTCTAAGC
* * ** * *
34316373 ATATGGAGTTCATTCCCAGTGTAAGATCGGACCAGACTGAAGGTTGTGGTAGCAGGATCGACAGC
65 ATATGGAGTTCATTCCCAGTGTAAGATCAGACCAGACCGAAGGTTACGGCAGCAGAATCGACAGC
* ** *
34316438 ACGCAGGGGCGATCAAGTCGATCCTCGGCTTGCGCAGTTTGCCTCTCCGGTTGGTTAAGTGCCCG
130 ACGCAGGGGCGATCAAGTCAATCCTCGGCTTGCGCAGTTTGCCTCTCCGGCCGGTTAAGCGCCCG
* **
34316503 CACGCCTCTTCCTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGTCAGACC
195 CACGCCTCTTCCTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCAGACC
* * * *
34316568 GAGGGTCACAGCAGGACCGACAGCACGCAGAGGGGGACCGGGCCGATCCTCGACTTGCAGATGCC
260 GAGGGTCACAGCAGGACCAACAGCACACAGAGGGGGACCAGGCCGATCCCCGACTTGCAGATGCC
* * * * *
34316633 TCTTCGATCGGCTCAGTGCCCGCACGCTCGTTTCATGGGTTAACTTATGCATACGGAGTTCATTC
325 TCTCCGACCGGCTCAGCGCCCGCACGCTCGTTCCATGGGTTAACTTAGGCATACGGAGTTCATTC
* * *
34316698 CCAATATAAGATCAGATCGGACCGAGAGTTGCAGCAACAGGATCGACAGCACGCAGGGGGGACCG
390 CCAATATAAGATCAGACCAGACCGAGAGTTGCAGCAACAAGATCGACAGCACGCAGGGGGGACCG
* * * **
34316763 GGCTGATCCCCTGGTTGCGCATTCTGCCTCTCCGGTCGG
455 GGCTGATCCCCAGCTTACGCATTCTGCCTCTCCAATCGG
* * *
34316802 TTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGC
1 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT-TCCAGTCTAAGC
* * * * *
34316867 ATATGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTACGGCAGCAGAATCGATAGC
65 ATATGGAGTTCATTCCCAGTGTAAGATCAGACCAGACCGAAGGTTACGGCAGCAGAATCGACAGC
* ** * *
34316932 ACGCAGGGGGGATCGGGTCAATCCTCGGCTTGCGCA-TCCTT-TCTCTCCGGCCGGTTGAGCGCC
130 ACGCAGGGGCGATCAAGTCAATCCTCGGCTTGCGCAGT--TTGCCTCTCCGGCCGGTTAAGCGCC
* *
34316995 CGTACGCC-CGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCA
193 CGCACGCCTC--TTCCTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCA
* **** * * * * *
34317059 GACTGAGGGTTGTGGCAGTGGCATAAGCAGCACATAGAGTGGGACCAGGCCGATCCCCGGCTTGC
256 GACCGAGGGTCACAGCAG-GAC-CAA-CAGCACACAGAGGGGGACCAGGCCGATCCCCGACTT--
* * *
34317124 GCATTATGCCTCTCCGACCGGCTCAGCGCCCGCACGCTCGTTCCGTGGGTTGACTTAGGCATACG
316 GCA-GATGCCTCTCCGACCGGCTCAGCGCCCGCACGCTCGTTCCATGGGTTAACTTAGGCATACG
* * * * * *
34317189 GAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCAGGAACAAGATTGATAGCATGCA
380 GAGTTCATTCCCAATATAAGATCAGACCAGACCGAGAGTTGCAGCAACAAGATCGACAGCACGCA
* *
34317254 GGGGGGACCTGGCTGGTCCCCAGCTTACGCATTCTGCCTCTCCAATCGG
445 GGGGGGACCGGGCTGATCCCCAGCTTACGCATTCTGCCTCTCCAATCGG
** * * * *
34317303 CTGAGCGCTGGCACGTTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCGATGTCTAAGT
1 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCA-GTCTAAGC
*
34317368 ATACGGAGTTCATTCCCAGTGTAAGAT
65 ATATGGAGTTCATTCCCAGTGTAAGAT
34317395 TTTGAGCCAC
Statistics
Matches: 499, Mismatches: 83, Indels: 15
0.84 0.14 0.03
Matches are distributed among these distances:
493 2 0.00
494 166 0.33
495 64 0.13
496 2 0.00
497 1 0.00
498 30 0.06
500 5 0.01
501 229 0.46
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (493 bp):
CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCAGTCTAAGCA
TATGGAGTTCATTCCCAGTGTAAGATCAGACCAGACCGAAGGTTACGGCAGCAGAATCGACAGCA
CGCAGGGGCGATCAAGTCAATCCTCGGCTTGCGCAGTTTGCCTCTCCGGCCGGTTAAGCGCCCGC
ACGCCTCTTCCTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCAGACCG
AGGGTCACAGCAGGACCAACAGCACACAGAGGGGGACCAGGCCGATCCCCGACTTGCAGATGCCT
CTCCGACCGGCTCAGCGCCCGCACGCTCGTTCCATGGGTTAACTTAGGCATACGGAGTTCATTCC
CAATATAAGATCAGACCAGACCGAGAGTTGCAGCAACAAGATCGACAGCACGCAGGGGGGACCGG
GCTGATCCCCAGCTTACGCATTCTGCCTCTCCAATCGG
Found at i:34318103 original size:26 final size:26
Alignment explanation
Indices: 34318073--34318125 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34318063 GTTGACTTAG
34318073 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
34318099 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
34318125 G
1 G
34318126 ACTGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:34318462 original size:159 final size:158
Alignment explanation
Indices: 34318163--34318463 Score: 336
Period size: 159 Copynumber: 1.9 Consensus size: 158
34318153 TAGGATCAAC
* * * * * * * *
34318163 AGCACGTAGGGGGGACCGAGTCGATCCCCGACTTGCGCATTCTACCTCTTCGGCCGGCTGAGTGC
1 AGCACGCAGGGGGGACCGAGTCGATCCCCGACGTGCACATTATACCACTTCGACCGGATCAGTGC
* * * ** * * *
34318228 CCGCACGCCCGTTTCATGGGTTGGCTTATGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCG
66 CCACACGCCCGTTTCATGGGTTGACTCATGCATACAGAGTTCATTCCATGTCTAAGACCCAACCA
* *
34318293 GACCGGGGGTTGTGGCAGCGGGATCAGT
131 AACCGAGGGTTGTGGCAGCGGGATCAGT
* *
34318321 AGCACGCAGAGGGGGACCGAG-CTGATCCCCGACGTGCACATTATGCCACTTTGACCGGATCAGT
1 AGCACGCAG-GGGGGACCGAGTC-GATCCCCGACGTGCACATTATACCACTTCGACCGGATCAGT
* * * * *
34318385 GCCCACACGCTCGTTTCGTGGGTTGACTCATGCATACATAGTTCATTCCCA-GTCTAAGATCGAA
64 GCCCACACGCCCGTTTCATGGGTTGACTCATGCATACAGAGTTCATT-CCATGTCTAAGACCCAA
34318449 CCAAACCGAGGGTTG
128 CCAAACCGAGGGTTG
34318464 CGATAGTAGG
Statistics
Matches: 115, Mismatches: 25, Indels: 5
0.79 0.17 0.03
Matches are distributed among these distances:
158 9 0.08
159 103 0.90
160 3 0.03
ACGTcount: A:0.20, C:0.29, G:0.30, T:0.22
Consensus pattern (158 bp):
AGCACGCAGGGGGGACCGAGTCGATCCCCGACGTGCACATTATACCACTTCGACCGGATCAGTGC
CCACACGCCCGTTTCATGGGTTGACTCATGCATACAGAGTTCATTCCATGTCTAAGACCCAACCA
AACCGAGGGTTGTGGCAGCGGGATCAGT
Found at i:34318579 original size:158 final size:157
Alignment explanation
Indices: 34318390--34318758 Score: 427
Period size: 158 Copynumber: 2.3 Consensus size: 157
34318380 TCAGTGCCCA
* * * * *
34318390 CACGCTCGTTTCGTGGGTTGACTCATGCATACATAGTTCATTCCCAGTCTAAGATC-GAACCAAA
1 CACGCTCGTTTCATGGGTTGGCT-AGGCATACAGAGTTCATTCCCAGTCTAAGACCAG-ACCAAA
* * * *
34318454 CCGAGGGTTGCGATAGTAGGATCGATAGCATGTAGAGGGGACCGGGCCGATCCACAACTTGCGCA
64 CCGAGGGTTGCGATAATAGGATCGATAGCACGCAGAGGGGACCGGGCCGATCCACAACTTACGCA
* * *
34318519 TTCTATCTCTCCGACCGACTGAGCACCTG
129 TTCTACCTCCCCAACCGACTGAGCACCTG
* * *
34318548 CACGCTTGTTTCTTGGGTTGGCATAGGCATACAGAGTTCATT-CCATGTCTAAGACCAGACCAGA
1 CACGCTCGTTTCATGGGTTGGC-TAGGCATACAGAGTTCATTCCCA-GTCTAAGACCAGACCAAA
* * * *
34318612 CCTAGGGTTGCGATAATAGGATCGATAGCACGCAGGGGGGACCGGGCCGATCCTCGACTTACGCA
64 CCGAGGGTTGCGATAATAGGATCGATAGCACGCAGAGGGGACCGGGCCGATCCACAACTTACGCA
* * ** **
34318677 TTCTGCCTCCCCAATCGGTTGAGTGCCTG
129 TTCTACCTCCCCAACCGACTGAGCACCTG
* **
34318706 CACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCTTGTCTAAG
1 CACGCTCGTTTCATGGGTTGGC-TAGGCATACAGAGTTCATTCCCAGTCTAAG
34318759 CATAGGGAGT
Statistics
Matches: 177, Mismatches: 30, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
157 3 0.02
158 171 0.97
159 3 0.02
ACGTcount: A:0.22, C:0.26, G:0.27, T:0.25
Consensus pattern (157 bp):
CACGCTCGTTTCATGGGTTGGCTAGGCATACAGAGTTCATTCCCAGTCTAAGACCAGACCAAACC
GAGGGTTGCGATAATAGGATCGATAGCACGCAGAGGGGACCGGGCCGATCCACAACTTACGCATT
CTACCTCCCCAACCGACTGAGCACCTG
Found at i:34318781 original size:26 final size:26
Alignment explanation
Indices: 34318732--34318784 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
34318722 GTTGGCTTAG
*
34318732 GCATACGGAGTTCATTCCTTGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
*
34318758 GCATAGGGAGTTCATTTCC-AGTCTAA
1 GCATACGGAGTTCA-TTCCTAGTCTAA
34318784 G
1 G
34318785 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:34319240 original size:157 final size:157
Alignment explanation
Indices: 34318812--34319262 Score: 530
Period size: 159 Copynumber: 2.8 Consensus size: 157
34318802 GTTACGGCAG
* * * *
34318812 CGACAGCACGTAGGAGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGTCGACTGA
1 CGACAGCACGCAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGCCGACTGA
* * * * **
34318877 GCACCCGCATGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG-CCCA
66 GCGCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATA-CGAGTTCATTCCATGTCTAAGATCGG
*
34318941 AGCTGGACCGAGGGTTGTGGCAGCAGGAC
130 AG-TAGACCGAGGGTTGTGGCAGCAGGAC
* * * * * *
34318970 CGGCAGCACGCAGAGGGGGATCGAGTCGATCCCCGACTTGCGCATTATGCCTCTTCGGCCTACTC
1 CGACAGCACGCAG-GGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGCCGACTG
* * * * *
34319035 AGTGCCCGTATGCTCGTTTCATGGGTTGACTTATGCATACAGAGTTCATTCCCA-GTCTAAGATC
65 AGCGCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATAC-GAGTTCATT-CCATGTCTAAGATC
*
34319099 GGAGTAGACCGAGGGTTGTGGCAGCAGGAT
128 GGAGTAGACCGAGGGTTGTGGCAGCAGGAC
* * * *
34319129 CGACAGCACGCAGGGGGGATCGGGTCGAT-CTCGGCTTGTGCATTCTGCCTCTCCGGCCGGCTGA
1 CGACAGCACGCAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGCCGACTGA
* ** *
34319193 GCGTCCGCACACTCGTTTCGTGGGTTGGCTTGGGCATACGTAGTTCATTCCATGTCTAAGCATAC
66 GCGCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACG-AGTTCATTCCATGTCTAAG-AT-C
34319258 GGAGT
128 GGAGT
34319263 TTGTTCCTAG
Statistics
Matches: 243, Mismatches: 42, Indels: 15
0.81 0.14 0.05
Matches are distributed among these distances:
156 4 0.02
157 72 0.30
158 28 0.12
159 133 0.55
160 6 0.02
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.24
Consensus pattern (157 bp):
CGACAGCACGCAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGCCGACTGA
GCGCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGAGTTCATTCCATGTCTAAGATCGGA
GTAGACCGAGGGTTGTGGCAGCAGGAC
Found at i:34319269 original size:26 final size:26
Alignment explanation
Indices: 34319226--34319278 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
34319216 GTTGGCTTGG
*
34319226 GCATACGTAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
**
34319252 GCATACGGAGTTTGTTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
34319278 G
1 G
34319279 ATTTTGAGCC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.21, G:0.21, T:0.34
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:34320283 original size:159 final size:159
Alignment explanation
Indices: 34320099--34320478 Score: 410
Period size: 159 Copynumber: 2.4 Consensus size: 159
34320089 TGACCGACTG
* * * *
34320099 AGCACCCACACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCT
1 AGCACCCGCACACTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCC-
* * * *
34320164 AG-CCGAA-TCGAGGGTTGTGGTAACG-GGACCCACAGCACGTAGAGGGGGATCGGGCCGAT-CT
65 AGACCGAACT-GAAGGTTGCGGT-ACGAGGACCCACAGCACGCAGAGGGGGACCGGGCCGATCCT
* * *
34320225 CTAGCTTGTGCATTATGCCTCTCCGACTAGCTC
128 -TAGCTCGTGCATTATACCTCTCCAACTAGCTC
** * * **
34320258 AGTGCTCGCACACTCGTTTCATGGGTTGACTTAGGCATAGGGAGTTCATTCCCA-GTCTAAGATC
1 AGCACCCGCACACTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCC
* * * * * *
34320322 AGACCGAACTGAAGGTTGCGGTAGGAGGATCGACAGCACGCAGGGGGGGACCGGGCCGGTCCTTG
65 AGACCGAACTGAAGGTTGCGGTACGAGGACCCACAGCACGCAGAGGGGGACCGGGCCGATCCTTA
* * *
34320387 GCTCGTGCATTCTACCTTTCCAACTAGCTG
130 GCTCGTGCATTATACCTCTCCAACTAGCTC
** * *
34320417 AGCACCCGCATGCTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGC
1 AGCACCCGCACACTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
34320479 ATAAGGAGTT
Statistics
Matches: 180, Mismatches: 35, Indels: 12
0.79 0.15 0.05
Matches are distributed among these distances:
158 7 0.04
159 167 0.93
160 6 0.03
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.24
Consensus pattern (159 bp):
AGCACCCGCACACTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCA
GACCGAACTGAAGGTTGCGGTACGAGGACCCACAGCACGCAGAGGGGGACCGGGCCGATCCTTAG
CTCGTGCATTATACCTCTCCAACTAGCTC
Found at i:34320481 original size:26 final size:26
Alignment explanation
Indices: 34320451--34320503 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
34320441 GTTGGCTTAG
*
34320451 GCATACGAAGTTCATTCCATGTCTAA
1 GCATAAGAAGTTCATTCCATGTCTAA
* *
34320477 GCATAAGGAGTTCATTCCCTGTCTAA
1 GCATAAGAAGTTCATTCCATGTCTAA
34320503 G
1 G
34320504 ATCGAACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATAAGAAGTTCATTCCATGTCTAA
Found at i:34322536 original size:26 final size:26
Alignment explanation
Indices: 34322506--34322558 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
34322496 GTTGGCTTAG
* *
34322506 GCATACGGAGTTCGTT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
34322532 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
34322558 G
1 G
34322559 ATCGGATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:34322720 original size:26 final size:26
Alignment explanation
Indices: 34322691--34322743 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34322681 GTTGACTTAG
34322691 GCATAC-GATGTTCATCCCCAGTCTAA
1 GCATACAGA-GTTCATCCCCAGTCTAA
*
34322717 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
34322743 G
1 G
34322744 ATCAGATCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:34323100 original size:159 final size:159
Alignment explanation
Indices: 34322717--34323210 Score: 496
Period size: 159 Copynumber: 3.1 Consensus size: 159
34322707 CCCAGTCTAA
*
34322717 GCATAC-AGAGTTCATTCCCAGTCTAAGATCAGATCGAACCGAGGGTTGCGACAGTAGGATCGAC
1 GCATACGA-AGTTCATTCCCAGTCTAAGATCAGATCGAACCGAGGGTTGCGACAGCAGGATCGAC
* * * * *
34322781 AGCATGCAG-GGGGGACCGAGATGATCCCCGGCTTGCGCATTCTACCTC-TCCGATCGGTTGAGT
65 AGCACGCAGAGGGGGACCGGGATGATCCCCGGCTTGCGCATTCTACCTCTTCGGCT-GGTTGAGC
* *
34322844 GCCCGTACGCCCGTTTCGTGGGTTGGCTTAG
129 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * ** * ** * * * *
34322875 GCATAGGGAGTTCATT-GCATGTCTAAGCCCCAG-TCGGACCGAGGGTTATGGCAGCGGGACCCA
1 GCATACGAAGTTCATTCCCA-GTCTAAG-ATCAGATCGAACCGAGGGTTGCGACAGCAGGATCGA
* * * ** * * * *
34322938 CAGCACGTAGAGGGGGACTGGGCTGATCAGCGGCTTGCGCATTATACCTCTTTGGCTGGCTCAGC
64 CAGCACGCAGAGGGGGACCGGGATGATCCCCGGCTTGCGCATTCTACCTCTTCGGCTGGTTGAGC
* * ** *
34323003 GCCCGCATGCTCATTTCGTGGGTTGATTTAC
129 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * *
34323034 GCATACGAAGTTCATTCCCAGTCTAAGTTCAGACCAAACCGATGGTTGCGACAGCAGGATCGACA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGATCGAACCGAGGGTTGCGACAGCAGGATCGACA
* * * *
34323099 GCACACA-AGGGGTGACCGGGATGATCCCCGACTTACGCATTCTACCTCTTCGGCCGGTTGAGCG
66 GCACGCAGAGGGG-GACCGGGATGATCCCCGGCTTGCGCATTCTACCTCTTCGGCTGGTTGAGCG
* *
34323163 CCAGCACGCTCGTTTCATGGGTTGGCTTAG
130 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
*
34323193 GCATACGAATTTCATTCC
1 GCATACGAAGTTCATTCC
34323211 ATTTCTAAGC
Statistics
Matches: 258, Mismatches: 70, Indels: 15
0.75 0.20 0.04
Matches are distributed among these distances:
157 2 0.01
158 58 0.22
159 193 0.75
160 5 0.02
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (159 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCAGATCGAACCGAGGGTTGCGACAGCAGGATCGACA
GCACGCAGAGGGGGACCGGGATGATCCCCGGCTTGCGCATTCTACCTCTTCGGCTGGTTGAGCGC
CCGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:34323243 original size:26 final size:26
Alignment explanation
Indices: 34323193--34323245 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
34323183 GTTGGCTTAG
* **
34323193 GCATACGAATTTCATTCCATTTCTAA
1 GCATACGAAGTTCATTCCAAGTCTAA
*
34323219 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGAAGTTCATTCCAAGTCTAA
34323245 G
1 G
34323246 ATTAGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.23, G:0.15, T:0.32
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCAAGTCTAA
Found at i:34323400 original size:687 final size:685
Alignment explanation
Indices: 34322170--34323404 Score: 1591
Period size: 687 Copynumber: 1.8 Consensus size: 685
34322160 CCTGCATGCT
*
34322170 CGTTTCATGGGTTGGCTTAGGCATAGGGAGTTAATTCCATGTCTAAGCCCCAGTCGGATCGAGGG
1 CGTTTCATGGGTTGGCTTAGGCATAGGGAGTTAATTCCATGTCTAAGCCCCAGTCGGACCGAGGG
* * * * ** ** *
34322235 TTGTGGTAGCGGGATCGACAGCACGCAGAGGGGGACTGGGTCGATCCTCGGCTTTTGCATTTGCC
66 TTATGGCAGCGGGACCCACAGCACGCAGAGGGGGACTGGGTCGATCAGCGGCTTGCGCATTTACC
* * *
34322300 TCTCCGACTGACTCAGCACCTGCACACTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTC
131 TCTCCGACTGACTCAGCACCCGCACACTCATTTCATGGGTTGACTTACGCATACAGAGTTCATTC
** * * ** *
34322365 CCAATCTAAGATCAGACCGGACTGAGGGTTGCGATAGCAGGATCGACAGCATGCAAGGGGGATCA
196 CCAATCTAAGATCAGACCAAACCGAGGGTTGCGACAGCAGGATCGACAGCACACAAGGGGGACCA
* * * * * * *
34322430 GACCGATCCCTAACGTACACATTCTGCCTCTCCGACTGGCTGTGCGTCTGCACGCTCGCTTCGTG
261 GACCGATCCCCAACGTACACATTCTACCTCTCCGACCGGCTGAGCGCCAGCACGCTCGCTTCATG
* * *
34322495 AGTTGGCTTAGGCATACGGAGTTCGTTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGA
326 AGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCAAGTCTAAGA
* * * * * * * *
34322560 TCGGATCAGACCGAGGGTTGCGGCAGCAAGATTGGTAGCACGCAGAGGGGGACCGGGTCGATTCT
391 TCAGACCAGACCGAGGGTTGCGGCAGCAAGATCGGTAGCACACAGAGGGGGACCAGGCCGATCCC
** * * * ***
34322625 TGGCTTACGTATTATGCCTCTCCGATCGGCTCAGTGCCTACACGCTCGTTTTGTTGGTTGACTTA
456 CAGCTTACGGATTATGCCTCCCCGATCAGCTCAACACCTACACGCTCGTTTTGTTGGTTGACTTA
34322690 GGCATACGATGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGATCGAA
521 GGCATACGATGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGATCGAA
34322755 CCGAGGGTTGCGACAGTAGGATCGACAGCATGCAGGGGGGACCGAGATGATCCCCGGCTTGCGCA
586 CCGAGGGTTGCGACAGTAGGATCGACAGCATGCAGGGGGGACCGAGATGATCCCCGGCTTGCGCA
34322820 TTCTACCTCTCCGATCGGTTGAGTGCCCGTACGCC
651 TTCTACCTCTCCGATCGGTTGAGTGCCCGTACGCC
* * *
34322855 CGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTGCATGTCTAAGCCCCAGTCGGACCGAGGG
1 CGTTTCATGGGTTGGCTTAGGCATAGGGAGTTAATTCCATGTCTAAGCCCCAGTCGGACCGAGGG
*
34322920 TTATGGCAGCGGGACCCACAGCACGTAGAGGGGGACTGGG-CTGATCAGCGGCTTGCGCATTATA
66 TTATGGCAGCGGGACCCACAGCACGCAGAGGGGGACTGGGTC-GATCAGCGGCTTGCGCATT-TA
** * * * ** * *
34322984 CCTCTTTGGCTGGCTCAGCGCCCGCATGCTCATTTCGTGGGTTGATTTACGCATAC-GAAGTTCA
129 CCTCTCCGACTGACTCAGCACCCGCACACTCATTTCATGGGTTGACTTACGCATACAG-AGTTCA
* * *
34323048 TTCCCAGTCTAAGTTCAGACCAAACCGATGGTTGCGACAGCAGGATCGACAGCACACAAGGGGTG
193 TTCCCAATCTAAGATCAGACCAAACCGAGGGTTGCGACAGCAGGATCGACAGCACACAAGGGG-G
* * * * * * * * *
34323113 ACCGGGA-TGATCCCCGACTTACGCATTCTACCTCTTCGGCCGGTTGAGCGCCAGCACGCTCGTT
257 ACC-AGACCGATCCCCAACGTACACATTCTACCTCTCCGACCGGCTGAGCGCCAGCACGCTCGCT
* * * *
34323177 TCATGGGTTGGCTTAGGCATACGAATTTCATTCCATTTCTAAGCATACGGAGTTCATTCCAAGTC
321 TCATGAGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCAAGTC
* * * * *
34323242 TAAGATTAGACCGGACCGAGGGTTGCGGTAGCAGGATCGGTAGCACACAGTGGGGGACCAGGCCG
386 TAAGATCAGACCAGACCGAGGGTTGCGGCAGCAAGATCGGTAGCACACAGAGGGGGACCAGGCCG
** *
34323307 ATCCCCAGCTTGTGGATTATGCCTCCCCGA-CTAGCTCAACACCTGCACGCTCGTTTTG-TGTGT
451 ATCCCCAGCTTACGGATTATGCCTCCCCGATC-AGCTCAACACCTACACGCTCGTTTTGTTG-GT
* *
34323370 TGACTTAGGCATGCGGA-GTTCATTCCCAGTCTAAG
514 TGACTTAGGCATAC-GATGTTCATCCCCAGTCTAAG
34323405 ATTGGATTGG
Statistics
Matches: 457, Mismatches: 85, Indels: 14
0.82 0.15 0.03
Matches are distributed among these distances:
684 1 0.00
685 112 0.25
686 108 0.24
687 232 0.51
688 4 0.01
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.25
Consensus pattern (685 bp):
CGTTTCATGGGTTGGCTTAGGCATAGGGAGTTAATTCCATGTCTAAGCCCCAGTCGGACCGAGGG
TTATGGCAGCGGGACCCACAGCACGCAGAGGGGGACTGGGTCGATCAGCGGCTTGCGCATTTACC
TCTCCGACTGACTCAGCACCCGCACACTCATTTCATGGGTTGACTTACGCATACAGAGTTCATTC
CCAATCTAAGATCAGACCAAACCGAGGGTTGCGACAGCAGGATCGACAGCACACAAGGGGGACCA
GACCGATCCCCAACGTACACATTCTACCTCTCCGACCGGCTGAGCGCCAGCACGCTCGCTTCATG
AGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCAAGTCTAAGA
TCAGACCAGACCGAGGGTTGCGGCAGCAAGATCGGTAGCACACAGAGGGGGACCAGGCCGATCCC
CAGCTTACGGATTATGCCTCCCCGATCAGCTCAACACCTACACGCTCGTTTTGTTGGTTGACTTA
GGCATACGATGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGATCGAA
CCGAGGGTTGCGACAGTAGGATCGACAGCATGCAGGGGGGACCGAGATGATCCCCGGCTTGCGCA
TTCTACCTCTCCGATCGGTTGAGTGCCCGTACGCC
Found at i:34323514 original size:159 final size:156
Alignment explanation
Indices: 34323219--34323711 Score: 549
Period size: 159 Copynumber: 3.1 Consensus size: 156
34323209 CCATTTCTAA
* * *
34323219 GCATACGGAGTTCATTCCAAGTCTAAGATTAGACCGGACCGAGGGTTGCGGTAGCAGGATCGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATTAGACCGGACCGAGGGTTGTGGTAGCAGGATCGATA
* * * * * * * * *
34323284 GCACACAGTGGGGGACC-AGGCCGATCCCCAGCTTGTGGATTATGCCTCCCCGACTAGCTCAACA
66 GCACGCA-TGGGGGACCGA-GCCGATCCCCGGCTTGTGCATTATGCCTCTCCGGC-CGGTCGACG
*
34323348 CCTGCACGCTCGTTTTGTGTGTTGACTTAG
128 CCTGCACGCTCGTTTCGTG-GTTGACTTAG
* * ** **
34323378 GCATGCGGAGTTCATTCCCAGTCTAAGATTGGATTGGACCGAATGTTGTGGTAGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATTAGACCGGACCGAGGGTTGTGGTAGCAGGATCGATA
**
34323443 GCACGCATAGGGGGACCGAGCCGATCATCGGCTTGTGCATTATGCCTCTCCGGCCGGGTCGACGC
66 GCACGCAT-GGGGGACCGAGCCGATCCCCGGCTTGTGCATTATGCCTCTCCGGCC-GGTCGACGC
* *
34323508 CCGCACGCTCGTTTCATGGGTTGACTTAG
129 CTGCACGCTCGTTTCGT-GGTTGACTTAG
* * *
34323537 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATTAGACCGGACCGAGGGTTGTGGTAGCAGGATCGATA
* * * * * * * * *
34323602 GCAAG-TTGGGGGGATCGAGCCGGTCCCCGACTTGCGCATTTTGCCTCTCCGGTCGGTTGAGCGC
66 GCACGCAT-GGGGGACCGAGCCGATCCCCGGCTTGTGCATTATGCCTCTCCGGCCGGTCGA-CGC
* *
34323666 CTGCATGCTCGTTTCGTGGATTGGCTTAG
129 CTGCACGCTCGTTTCGTGG-TTGACTTAG
34323695 GCATACGGAGTTCATTC
1 GCATACGGAGTTCATTC
34323712 AATGTCTAAG
Statistics
Matches: 280, Mismatches: 48, Indels: 13
0.82 0.14 0.04
Matches are distributed among these distances:
157 7 0.03
158 82 0.29
159 189 0.68
160 2 0.01
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATTAGACCGGACCGAGGGTTGTGGTAGCAGGATCGATA
GCACGCATGGGGGACCGAGCCGATCCCCGGCTTGTGCATTATGCCTCTCCGGCCGGTCGACGCCT
GCACGCTCGTTTCGTGGTTGACTTAG
Done.