Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 377 of 402
Found at i:34324092 original size:26 final size:26
Alignment explanation
Indices: 34324063--34324115 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
34324053 GTTGACTTAG
* *
34324063 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
*
34324089 GCATACGAAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
34324115 G
1 G
34324116 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:34325315 original size:26 final size:26
Alignment explanation
Indices: 34325279--34325331 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
34325269 GTTGACTTAG
34325279 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
34325305 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
34325331 G
1 G
34325332 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:34325595 original size:159 final size:159
Alignment explanation
Indices: 34325397--34325807 Score: 438
Period size: 159 Copynumber: 2.6 Consensus size: 159
34325387 GGCTGATACT
*
34325397 CAGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCACCCGCACGTCCATTTCATGGGTTGGCTTA
1 CAGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCACCCGCACGTCCATTTCGTGGGTTGGCTTA
* * * * ** * *
34325462 GGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACGGGGGGTTATGGCAACGGGACCGGC
66 GGCATACGGAGTTCATTCCATGTCTAAGCCCAAACCGGACCGAGGGTTACAGCAACAGGACCGAC
*
34325527 AGCACGCAGAGG-GGGA-CAGAGCCGATCCC
131 AGCACACAG-GGAGGGATCAG-GCCGATCCC
** * * * * * * * *
34325556 TGGTTTGCGCATTATGCCTCTCCGACTGGCTCAGCACCCGCACAT-TATTTTTGTGGGTTGACTT
1 CAGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCACCCGCACGTCCA-TTTCGTGGGTTGGCTT
** ** ** **
34325620 AGGCATACGGAGTTCATTTCCA-GTCTAAGATCAAATTGGACCGAGGGTTACAGCAGTAGGATTG
65 AGGCATACGGAGTTCA-TTCCATGTCTAAGCCCAAACCGGACCGAGGGTTACAGCAACAGGACCG
**
34325684 ACAGCACATTGGGAGGGATCAGGCCGATCCC
129 ACAGCACACAGGGAGGGATCAGGCCGATCCC
* **
34325715 CAGCTTACGCATTCTGCCTCTCCGACCGGCTGAGTGCCCGCACG-CTCATTTCGTGGGTTGGCTT
1 CAGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCACCCGCACGTC-CATTTCGTGGGTTGGCTT
34325779 AGGCATACGGAGTT-ATTCCATGTCTAAGC
65 AGGCATACGGAGTTCATTCCATGTCTAAGC
34325808 ATACGGAGTT
Statistics
Matches: 201, Mismatches: 44, Indels: 15
0.77 0.17 0.06
Matches are distributed among these distances:
157 5 0.02
158 11 0.05
159 176 0.88
160 9 0.04
ACGTcount: A:0.20, C:0.28, G:0.28, T:0.24
Consensus pattern (159 bp):
CAGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCACCCGCACGTCCATTTCGTGGGTTGGCTTA
GGCATACGGAGTTCATTCCATGTCTAAGCCCAAACCGGACCGAGGGTTACAGCAACAGGACCGAC
AGCACACAGGGAGGGATCAGGCCGATCCC
Found at i:34325815 original size:25 final size:26
Alignment explanation
Indices: 34325781--34325832 Score: 81
Period size: 25 Copynumber: 2.0 Consensus size: 26
34325771 GTTGGCTTAG
34325781 GCATACGGAGTT-ATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
34325806 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
34325832 G
1 G
34325833 ATCGGATTGG
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 12 0.48
26 12 0.48
27 1 0.04
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:34325969 original size:185 final size:185
Alignment explanation
Indices: 34325622--34325993 Score: 441
Period size: 185 Copynumber: 2.0 Consensus size: 185
34325612 GTTGACTTAG
* *
34325622 GCATACGGAGTTCATTTCCAGTCTAAGATCAAATTGGACCGAGGGTTACAGCAGTAGGATTGACA
1 GCATACGGAGTTCATTTCCAGTCTAAGATCAAATTGGACCAAGGGTTACAGCAGTAGGATCGACA
** * * *
34325687 GCACATTGGGAGGGATCAGGCCGATCCCCAGCTTACGCATTCTGCCTCTCCGACCGGCTGAGTGC
66 GCACACAGGGAGGGATCAGGCCGATCCCCAGCTTACGCACTCTGCCTCTCCGACCAGATGAGTGC
* *
34325752 CCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTT-ATTCCATGTCTAA
131 CCGCACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
** * * *
34325806 GCATACGGAGTTCA-TTCCTAGTCTAAGATCGGATTGGATCAAGGGTTGC-GACAGTAGGATCGG
1 GCATACGGAGTTCATTTCC-AGTCTAAGATCAAATTGGACCAAGGGTTACAG-CAGTAGGATCGA
* * * * * * *
34325869 TAGCACGCAGGG-GGGATC-GGTCCGATCCCCCCGGCTTATGCACTCTGCCTCTCTGGCTAGATG
64 CAGCACACAGGGAGGGATCAGG-CCGAT--CCCCAGCTTACGCACTCTGCCTCTCCGACCAGATG
* *
34325932 AGTGCCCAG-ATGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
126 AGTGCCC-GCACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
34325992 GC
1 GC
34325994 CCCAACTGGA
Statistics
Matches: 158, Mismatches: 23, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
182 2 0.01
183 16 0.10
184 57 0.36
185 67 0.42
186 16 0.10
ACGTcount: A:0.21, C:0.25, G:0.28, T:0.26
Consensus pattern (185 bp):
GCATACGGAGTTCATTTCCAGTCTAAGATCAAATTGGACCAAGGGTTACAGCAGTAGGATCGACA
GCACACAGGGAGGGATCAGGCCGATCCCCAGCTTACGCACTCTGCCTCTCCGACCAGATGAGTGC
CCGCACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
Found at i:34327423 original size:26 final size:26
Alignment explanation
Indices: 34327373--34327425 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34327363 GTTGACTTAG
*
34327373 GCATACGGAGTTCATCTCCATTCTAA
1 GCATACGGAGTTCATCTCCAGTCTAA
34327399 GCATACGGAGTTCAT-TCCCAGTCTAA
1 GCATACGGAGTTCATCT-CCAGTCTAA
34327425 G
1 G
34327426 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCTCCAGTCTAA
Found at i:34327782 original size:159 final size:158
Alignment explanation
Indices: 34327399--34327793 Score: 456
Period size: 159 Copynumber: 2.5 Consensus size: 158
34327389 TCCATTCTAA
*
34327399 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCA-TAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCA-ACCAGACCGAGGGTTGTGGCAGCAGGATCGACA
* * * * * **
34327463 ACACGCA-AGGGGGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGCCGATTGAGGGC
65 GCACGCAGAGGGGGACCAGGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGGCCGATTGAGCAC
* *
34327527 CCGCACGCCCGTTTCTTGGGTTGGCTTAG
130 CCGCACGCCCGTTTCGTGGGTTGACTTAG
* ** * * * *
34327556 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCGGGACCGGC
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAACCAGACCGAGGGTTGTGGCAGCAGGATCGAC
* * * * *
34327620 AGCACGCAGAGGGGGACCAGGTCGATCCCCAGCTTGTGCATTATGCCTTTCCGGTCGGTTGAGCA
64 AGCACGCAGAGGGGGACCAGGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGGCCGATTGAGCA
* *
34327685 CCCGTACGCTCGTTTCGTGGGTTGACTTAG
129 CCCGCACGCCCGTTTCGTGGGTTGACTTAG
* * ** *
34327715 TCATACAGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCAGCAGCAGGATCAACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATC-AACCAGACCGAGGGTTGTGGCAGCAGGATCGACA
*
34327780 GCAGGCAG-GGGGGA
65 GCACGCAGAGGGGGA
34327794 TCAGACTGGT
Statistics
Matches: 195, Mismatches: 37, Indels: 11
0.80 0.15 0.05
Matches are distributed among these distances:
156 3 0.02
157 42 0.22
158 22 0.11
159 125 0.64
160 3 0.02
ACGTcount: A:0.21, C:0.28, G:0.32, T:0.20
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAACCAGACCGAGGGTTGTGGCAGCAGGATCGACAG
CACGCAGAGGGGGACCAGGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGGCCGATTGAGCACC
CGCACGCCCGTTTCGTGGGTTGACTTAG
Found at i:34327915 original size:26 final size:26
Alignment explanation
Indices: 34327873--34327925 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
34327863 GTTGGCTTAG
**
34327873 GCATACGGAGTTTATT-CCATGTCTAA
1 GCATACGGAGTACATTCCCA-GTCTAA
34327899 GCATACGGAGTACATTCCCAGTCTAA
1 GCATACGGAGTACATTCCCAGTCTAA
34327925 G
1 G
34327926 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTACATTCCCAGTCTAA
Found at i:34328060 original size:185 final size:184
Alignment explanation
Indices: 34327707--34328085 Score: 465
Period size: 185 Copynumber: 2.0 Consensus size: 184
34327697 TTTCGTGGGT
* *
34327707 TGACTTAGTCATACAGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCAGCAGCAG
1 TGACTAAG-CATACAGAGTACATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCAGCAGCAG
* * ** *
34327772 GATCAACAGCAGGCAGGGGGGATCAGACTGGTCCCTGACTTACGTATTCTGCCTCTCTGACCAGC
65 GATCAACAGCACGCAGGGGGGATCAGACTGATCCCTGACTTACACATTCTGCCTCTCCGACCAGC
* ** *
34327837 TAAACGGCCGCACGCTCATTTTTTGGGTTGGCTTAGGCATACGGAGTTTATTCCA
130 TAAACGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCA
* * * *
34327892 TGTCTAAGCATACGGAGTACATTCCCAGTCTAAGATC-AGACCAGACTGAGGGTTGCGGCAGCAG
1 TGACTAAGCATACAGAGTACATTCCCAGTCTAAGATCGA-ACCAGACCGAGGGTTGCAGCAGCAG
*** * * * * * *
34327956 GATTGGCAGCACGCAAGGGGGGAT-AGAGTCGATCCTTGGCTTGCACATTCTGCCTCTCCGGCCG
65 GATCAACAGCACGC-AGGGGGGATCAGACT-GATCCCTGACTTACACATTCTGCCTCTCCGACCA
* * *
34328020 GCTGAGCGCCCGCACGTTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCA
128 GCTAAACGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCA
34328077 TGACTAAGC
1 TGACTAAGC
34328086 CCAAGTCAAA
Statistics
Matches: 163, Mismatches: 28, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
183 1 0.01
184 64 0.39
185 98 0.60
ACGTcount: A:0.23, C:0.26, G:0.28, T:0.24
Consensus pattern (184 bp):
TGACTAAGCATACAGAGTACATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCAGCAGCAGG
ATCAACAGCACGCAGGGGGGATCAGACTGATCCCTGACTTACACATTCTGCCTCTCCGACCAGCT
AAACGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCA
Found at i:34328271 original size:26 final size:26
Alignment explanation
Indices: 34328242--34328294 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
34328232 GTTGACTTAG
* *
34328242 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGGTCATCCCCAGTCTAA
*
34328268 GCATACAGAGGTCATTCCCAGTCTAA
1 GCATACAGAGGTCATCCCCAGTCTAA
34328294 G
1 G
34328295 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACAGAGGTCATCCCCAGTCTAA
Found at i:34328754 original size:26 final size:26
Alignment explanation
Indices: 34328718--34328770 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34328708 GTTGGCTTAG
34328718 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
34328744 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
34328770 G
1 G
34328771 ATTGGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:34329145 original size:26 final size:26
Alignment explanation
Indices: 34329109--34329161 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34329099 GTTGACTTAG
34329109 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
34329135 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
34329161 G
1 G
34329162 ATTAGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:34329867 original size:26 final size:26
Alignment explanation
Indices: 34329831--34329932 Score: 159
Period size: 26 Copynumber: 3.9 Consensus size: 26
34329821 GACTTAGGCA
34329831 TACGGAGTTCATCCCCAGTCTAAGCG
1 TACGGAGTTCATCCCCAGTCTAAGCG
*
34329857 TACGGAGTTCATCCCCAGTCTAAACG
1 TACGGAGTTCATCCCCAGTCTAAGCG
* *
34329883 TACGGAGTTCATCCCTAGTCTAAGTG
1 TACGGAGTTCATCCCCAGTCTAAGCG
* *
34329909 TACAGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATCCCCAGTCTAAG
34329933 ATCGGATCGG
Statistics
Matches: 69, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 69 1.00
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.26
Consensus pattern (26 bp):
TACGGAGTTCATCCCCAGTCTAAGCG
Found at i:34330406 original size:158 final size:158
Alignment explanation
Indices: 34329913--34330407 Score: 483
Period size: 158 Copynumber: 3.1 Consensus size: 158
34329903 TAAGTGTACA
* * * * * **
34329913 GAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGCTACGACAGTAGAATCGGCAGCATACA
1 GAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGCTGCGGCAGTAGGATCGACAGCACGCA
** * * * * **
34329978 GAAGGAACCGGGCTGATCCCTGGCTTGTGCATTCTACCTCTCTGACCGGCTTAGCACCCGCACGC
66 GGGGGGACCGAGCTGATCCCTGGCTTGTGCATTCTGCCTCTCTGACCGGCTCAGTGCCCGCACGC
* * * * * *
34330043 CCGGTTCGTTGGTTTGCTTAGGCATAAG
131 TCGTTTCATGGGTTGGCTTAGGCATATG
* * ** * * * * *
34330071 GAGTTC-TTTCCATGTCTAAG-CCCCAGTCAGATCGAGGGTTGTGGCAGTGGGACCGACAGCACG
1 GAGTTCATTCCCA-GTCTAAGATCGGA-TCAGACCGAGGGCTGCGGCAGTAGGATCGACAGCACG
* ** * * **
34330134 TAGAGGGGGACCGAGCCAATCCCCGGCTTGTGCATTATGCCTCTCCAACCGGCTCAGTGCCCGCA
64 CAG-GGGGGACCGAGCTGATCCCTGGCTTGTGCATTCTGCCTCTCTGACCGGCTCAGTGCCCGCA
* *
34330199 CGCTCATTTCATGGGTTGACTTAGGCATATG
128 CGCTCGTTTCATGGGTTGGCTTAGGCATATG
* * *
34330230 GAGTTCATTCCCAATCTAAGATCGGATCAGACCAAGGGCTGCGGCAGTAGGATCGATAGCACGCA
1 GAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGCTGCGGCAGTAGGATCGACAGCACGCA
* ** * * * * *
34330295 GGGGGGACCGAGCTGATCCCTGACTTGCACATTCTGCCTCTTTGGCCGGCTGAGTGCCCGTAAGC
66 GGGGGGACCGAGCTGATCCCTGGCTTGTGCATTCTGCCTCTCTGACCGGCTCAGTGCCCGCACGC
34330360 TCGTTTCATGGGTTGGCTTAGGCATATG
131 TCGTTTCATGGGTTGGCTTAGGCATATG
34330388 GAGTTCATT-CCATGTCTAAG
1 GAGTTCATTCCCA-GTCTAAG
34330408 CATGCGGAAT
Statistics
Matches: 262, Mismatches: 69, Indels: 12
0.76 0.20 0.03
Matches are distributed among these distances:
157 10 0.04
158 131 0.50
159 114 0.44
160 7 0.03
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.24
Consensus pattern (158 bp):
GAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGCTGCGGCAGTAGGATCGACAGCACGCA
GGGGGGACCGAGCTGATCCCTGGCTTGTGCATTCTGCCTCTCTGACCGGCTCAGTGCCCGCACGC
TCGTTTCATGGGTTGGCTTAGGCATATG
Found at i:34330791 original size:26 final size:26
Alignment explanation
Indices: 34330761--34330813 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
34330751 GTTGACTTAG
* *
34330761 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCACAGTCTAA
*
34330787 GCATACAGAGTTCATTCACAGTCTAA
1 GCATACAGAGTTCATCCACAGTCTAA
34330813 G
1 G
34330814 ATCGGATCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCACAGTCTAA
Found at i:34331266 original size:158 final size:159
Alignment explanation
Indices: 34330787--34331460 Score: 500
Period size: 158 Copynumber: 4.2 Consensus size: 159
34330777 CCCAGTCTAA
* * ** * * *
34330787 GCATACAGAGTTCATTCACAGTCTAAGATCG-GATCGAAATGAGGGTTACGATAGCAGGATC-GT
1 GCATACGGAGTTCATTCCCAGTCTAAGCCCGAG-CCGAACTGAGGGTTACAATAGCAGGATCAG-
* * * * ** *
34330850 TAGCATGC-GGGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGGCTAAGC
64 CAGCACGCAGAGGGGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGACCGGCTGAGC
* * * *
34330914 GCCCGCACGCCCATTTTGTGGGCTGGCTTAG
129 GCCCGCACGCTCATTTCGTGGGTTGACTTAG
* * * * ***** * **
34330945 GCATAGGGAGTTCATT-CCATGTCTAAGCCCTAGCCGGACAGAGGGTTGTGGCAGCGGGATGGGC
1 GCATACGGAGTTCATTCCCA-GTCTAAGCCCGAGCCGAACTGAGGGTTACAATAGCAGGATCAGC
* * * * * * * *
34331009 AGCACACAGAGGGGGACCGGGCCAATCCCTGGCTTGCGCATTATGCCTCTTCTG-TCGGATCAGC
65 AGCACGCAGAGGGGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTC-TCCGACCGGCTGAGC
* * * * ** *
34331073 GGCTGTACACTTGTTTCGTGGGTTGACTTAT
129 GCCCGCACGCTCATTTCGTGGGTTGACTTAG
** * *
34331104 GCATACGGAGTTCATTCCCAGTCTAAGATCG-GATCGAACTGAGGGTTACAATAGCAGGATCAGT
1 GCATACGGAGTTCATTCCCAGTCTAAGCCCGAG-CCGAACTGAGGGTTACAATAGCAGGATCAGC
* * * * * *
34331168 AGCACGCAG-GGGGGACCGAGCCGATCCCCGGCTTGCGTATTTTTCCTCTCCGACCGGCTGAGCA
65 AGCACGCAGAGGGGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGACCGGCTGAGCG
* *
34331232 CCCGCACGCTCATTTTGTGGGTTGGCTTAG
130 CCCGCACGCTCATTTCGTGGGTTGACTTAG
* * *
34331262 GCATACGGAGTTCATT-CCATGTCTAAGCCCTAGCCGGACTGAGGGTTGTGGTAGCAGGACTGGC
1 GCATACGGAGTTCATTCCCA-GTCTAAGCCCGAGCCGAACTGA-GG--GT--TA-CA--A-TAGC
* * * * * * *
34331326 AGCGAGATCAACATCACGCAGAGGGGGACTGCGCTGATCCTCGACTTGCGTATTATGCCTCTCCG
56 A--G-GATCAGCAGCACGCAGAGGGGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCG
*
34331391 ACCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAA
118 ACCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAG
* *
34331433 GCATACGGAGTTCATCCCCAATCTAAGC
1 GCATACGGAGTTCATTCCCAGTCTAAGC
34331461 ACACGGAGTT
Statistics
Matches: 395, Mismatches: 97, Indels: 35
0.75 0.18 0.07
Matches are distributed among these distances:
157 8 0.02
158 138 0.35
159 119 0.30
160 6 0.02
161 2 0.01
163 2 0.01
164 2 0.01
166 1 0.00
167 4 0.01
169 1 0.00
170 13 0.03
171 96 0.24
172 3 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCCAGTCTAAGCCCGAGCCGAACTGAGGGTTACAATAGCAGGATCAGCA
GCACGCAGAGGGGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGACCGGCTGAGCGC
CCGCACGCTCATTTCGTGGGTTGACTTAG
Found at i:34331466 original size:26 final size:26
Alignment explanation
Indices: 34331430--34331485 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
34331420 TGGGTTGACT
*
34331430 TAAGCATACGGAGTTCATCCCCAATC
1 TAAGCACACGGAGTTCATCCCCAATC
* *
34331456 TAAGCACACGGAGTTCATTCCCAGTC
1 TAAGCACACGGAGTTCATCCCCAATC
34331482 TAAG
1 TAAG
34331486 ATCAAACCGG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.29, G:0.18, T:0.23
Consensus pattern (26 bp):
TAAGCACACGGAGTTCATCCCCAATC
Found at i:34331782 original size:672 final size:671
Alignment explanation
Indices: 34330718--34331960 Score: 1682
Period size: 672 Copynumber: 1.9 Consensus size: 671
34330708 CGGCCGCTCG
* * * *
34330718 GACCGGCTGAGCGCCCGCATGCTCGTCTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGT
1 GACCGGCTGAGCGCCCGCACGCTCATCTCATGGGTTGACTTAAGCATACGGAGTTCATCCCCAAT
* ** * * *
34330783 CTAAGCATACAGAGTTCATTCACAGTCTAAGATCGGATCGAAATGAGGGTTACGATAGCAGGATC
66 CTAAGCACACAGAGTTCATTCACAGTCTAAGATCAAACCGAAACGAGGGTTACGACAGCAGGATC
* * * * *
34330848 GTTAGCATGCGGGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGGCTAAG
131 GTCAGCACGCAGGGGGAACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGATCGGCTAAG
* * *
34330913 CGCCCGCACGCCCATTTTGTGGGCTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAG
196 CGCCCGCACGCCCATTTCGTGCGCTGGCGTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAG
* * ** * * *
34330978 CCGGACAGAGGGTTGTGGCAGCGGGATGGGCAGCACACAGAGGGGGACCGGGCCAATCCCTGGCT
261 CCGGACAGAGGGATGTGGCAGCGAGACCGACAGCACACAGAGAGGGACCGAGCCAATCCCTGGCT
** * * * * *** * *
34331043 TGCGCATTATGCCTCTTCTGTCGGATCAGCGGCTGTACACTTGTTTCGTGGGTTGACTTATGCAT
326 TAAGCATTATGCCTCTCCTGCCGGATCAACGCCCACACACTCGTTTCGTGGGTTGACTTAGGCAT
* * * * *
34331108 ACGGAGTTCATTCCCAGTCTAAGATCGGATCGAACTGAGGGTTACAATAGCAGGATC-AGTAGCA
391 ACGGAGTTCATTCCCAGTCTAAGATCAGACCGAAATGAGGGTTACAACAGCAAGATCGA-TAGCA
* * * * *
34331172 CGCAGGGGGGACCGAGCCGATCCCCGGCTTGCGTATTTTTCCTCTCCGACCGGCTGAGCACCCGC
455 CGCA-GGGGGACCGAGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGACTGAGCACCCGC
*
34331237 ACGCTCATTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCTAGCCGGACT
519 ACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCTAGCCGGACT
34331302 GAGGGTTGTGGTAGCAGGACTGGCAGCGAGATCAACATCACGCAGAGGGGGACTGCGCTGATCCT
584 GAGGGTTGTGGTAGCAGGACTGGCAGCGAGATCAACATCACGCAGAGGGGGACTGCGCTGATCCT
34331367 CGACTTGCGTATTATGCCTCTCC
649 CGACTTGCGTATTATGCCTCTCC
* *
34331390 GACCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAAGCATACGGAGTTCATCCCCAAT
1 GACCGGCTGAGCGCCCGCACGCTCATCTCATGGGTTGACTTAAGCATACGGAGTTCATCCCCAAT
* * * * *
34331455 CTAAGCACACGGAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTGCGACAGCAGGATC
66 CTAAGCACACAGAGTTCATTCACAGTCTAAGATCAAACCGAAACGAGGGTTACGACAGCAGGATC
* * * * * *
34331520 AG-CAGTACGCAGGGGGAATCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTTCGATCGGCTTA
131 -GTCAGCACGCAGGGGGAACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGATCGGCTAA
* * * *
34331584 GCGCCCGCACGCCCGA-TTCGTTCGTTTGCGTAGGCATAGGGAGTTCATTCGATGTCTAAGCCCT
195 GCGCCCGCACGCCC-ATTTCGTGCGCTGGCGTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCT
* * * * *
34331648 AGCCGGACTGAGGGATGTGGCAGCGAGACCGATAGCACGCAGAGAGGGACTGAGCTAATCCCTGG
259 AGCCGGACAGAGGGATGTGGCAGCGAGACCGACAGCACACAGAGAGGGACCGAGCCAATCCCTGG
* *
34331713 CTTAAGCATTTTGCCTCTCCTGCCGGCTCAACGCCCACACACTCGTTTCGTGGGTTGACTTAGGC
324 CTTAAGCATTATGCCTCTCCTGCCGGATCAACGCCCACACACTCGTTTCGTGGGTTGACTTAGGC
* * *
34331778 ATACGGAGTTCTTTCCCAGTCTAAGATCAGACCGAAATGAGGGTTGCGACAGCAAGATCGATAGC
389 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAAATGAGGGTTACAACAGCAAGATCGATAGC
* * * * * *
34331843 ACGCAGGGGGATCGGGCCGATCCTCGACTTGCGCATTCTGCCTTTTCGACCGACTGAGTACCCGC
454 ACGCAGGGGGACCGAGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGACTGAGCACCCGC
* * *
34331908 AGGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTTTAAGC
519 ACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
34331961 ATACGGAGTT
Statistics
Matches: 485, Mismatches: 83, Indels: 7
0.84 0.14 0.01
Matches are distributed among these distances:
671 98 0.20
672 384 0.79
673 3 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (671 bp):
GACCGGCTGAGCGCCCGCACGCTCATCTCATGGGTTGACTTAAGCATACGGAGTTCATCCCCAAT
CTAAGCACACAGAGTTCATTCACAGTCTAAGATCAAACCGAAACGAGGGTTACGACAGCAGGATC
GTCAGCACGCAGGGGGAACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGATCGGCTAAG
CGCCCGCACGCCCATTTCGTGCGCTGGCGTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAG
CCGGACAGAGGGATGTGGCAGCGAGACCGACAGCACACAGAGAGGGACCGAGCCAATCCCTGGCT
TAAGCATTATGCCTCTCCTGCCGGATCAACGCCCACACACTCGTTTCGTGGGTTGACTTAGGCAT
ACGGAGTTCATTCCCAGTCTAAGATCAGACCGAAATGAGGGTTACAACAGCAAGATCGATAGCAC
GCAGGGGGACCGAGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGACTGAGCACCCGCAC
GCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCTAGCCGGACTGA
GGGTTGTGGTAGCAGGACTGGCAGCGAGATCAACATCACGCAGAGGGGGACTGCGCTGATCCTCG
ACTTGCGTATTATGCCTCTCC
Found at i:34332814 original size:26 final size:26
Alignment explanation
Indices: 34332778--34332828 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
34332768 TTGGCTTAGG
*
34332778 CATAGGGAGTTCATT-CCATGTCTAAA
1 CATAAGGAGTTCATTCCCA-GTCTAAA
34332804 CATAAGGAGTTCATTCCCAGTCTAA
1 CATAAGGAGTTCATTCCCAGTCTAA
34332829 GATTCTGAGC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.31, C:0.22, G:0.18, T:0.29
Consensus pattern (26 bp):
CATAAGGAGTTCATTCCCAGTCTAAA
Found at i:34333828 original size:159 final size:158
Alignment explanation
Indices: 34333514--34334008 Score: 460
Period size: 159 Copynumber: 3.1 Consensus size: 158
34333504 TAAGCATATA
* ** * ** ** * *
34333514 GAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTACGATAGTAGGATCGACAGCACGCA
1 GAGTTCATTCCCAGTCTAAGACCCAACCGGACCGAGGGTTACGGCAACAAGACCGACAGCACGCA
* * * * * * * * ** * *
34333579 AGGGGGATCGGGACGATCCTCGGCTTGCGCATTCTGCCTCTCCAGCCGATTGAGCTCCCGTACGC
66 GGGGGGACCGAGCCGATCCTTGGCTTGCGCATTATGCCTCTTCGGCCGGCTGAGCACCCGCACGC
* * *
34333644 CCGTTTCATGGGTTGGCTTAGGCATAGG
131 TCGTTTCGTGGGTTGGCTTAGGCATACG
* * **
34333672 GAGTTCATT-CCATGTCTAA-ACCCCAACCGGACCGAGGGTTATGGCAACAGGACCGGTAGCACG
1 GAGTTCATTCCCA-GTCTAAGA-CCCAACCGGACCGAGGGTTACGGCAACAAGACCGACAGCACG
* * * *
34333735 CAGAGTGGGACC-ATGTCGATCCTTAGCTTGCGCATTATGCCTCTTCGGCCGGCTCAGCACCCGC
64 CAG-GGGGGACCGA-GCCGATCCTTGGCTTGCGCATTATGCCTCTTCGGCCGGCTGAGCACCCGC
* *
34333799 ACGCTCGTTTCGTGGGTTGACTTATGCATACG
127 ACGCTCGTTTCGTGGGTTGGCTTAGGCATACG
* ** * * * * *
34333831 GAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGTAGCAAGATCGACAGCACGCA
1 GAGTTCATTCCCAGTCTAAGACCCAACCGGACCGAGGGTTACGGCAACAAGACCGACAGCACGCA
* * * * * *
34333896 GGGGGGACCGAGCCAATCCCTGGCTTGTGCATTTTGCCTC-TCTGGTCGGCTGAGCGCCC-CACG
66 GGGGGGACCGAGCCGATCCTTGGCTTGCGCATTATGCCTCTTC-GGCCGGCTGAGCACCCGCACG
*
34333959 CTTGTTTCGTGGGTTGGCTTAGGCATACG
130 CTCGTTTCGTGGGTTGGCTTAGGCATACG
34333988 GAGTTCATTCCCAGTCTAAGA
1 GAGTTCATTCCCAGTCTAAGA
34334009 TTTTGAGCAA
Statistics
Matches: 272, Mismatches: 57, Indels: 17
0.79 0.16 0.05
Matches are distributed among these distances:
157 57 0.21
158 90 0.33
159 121 0.44
160 4 0.01
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (158 bp):
GAGTTCATTCCCAGTCTAAGACCCAACCGGACCGAGGGTTACGGCAACAAGACCGACAGCACGCA
GGGGGGACCGAGCCGATCCTTGGCTTGCGCATTATGCCTCTTCGGCCGGCTGAGCACCCGCACGC
TCGTTTCGTGGGTTGGCTTAGGCATACG
Found at i:34334985 original size:159 final size:158
Alignment explanation
Indices: 34334770--34335178 Score: 507
Period size: 159 Copynumber: 2.6 Consensus size: 158
34334760 CCAATCCTTG
* * ** *
34334770 GCTTGTGCATTCTGCCTCTCCGATCGACTGAACGCCTGCACGCCTGTTTCACGGGTTGGCTTAGG
1 GCTTGTGCATTATGCCTCTCCGATCGACTGAGCGCCTGCACGCCCATTTCATGGGTTGGCTTAGG
* * *
34334835 CATAGGGAGTTGATTCCATGTCTAAGCCCTAGTCAGACCGAGTGTTGTGGTAGCGAGATCGGCAG
66 CATAGGGAGTTCATTCCATGTCTAAGCCCTAGTCAGACCGAGTGTTGTGGCAGCGAGACCGGCAG
* *
34334900 CATGGAGAGGGGGACTGGG-CTGATCCCC
131 CACGGAGAGGGGGACTGGGCCAG-TCCCC
* * *
34334928 AGCTTGTGCATTATGCCTCTCCGACCGACTGAGCGCCTGCACACCCATATCATGGGTTGGCTTAG
1 -GCTTGTGCATTATGCCTCTCCGATCGACTGAGCGCCTGCACGCCCATTTCATGGGTTGGCTTAG
* * * *
34334993 TCATAGGGAGTTCATTCCATGTCTAAGCCCTAGTCGGACTGAGTGTTGTGGCAGCGGGACCGGCA
65 GCATAGGGAGTTCATTCCATGTCTAAGCCCTAGTCAGACCGAGTGTTGTGGCAGCGAGACCGGCA
*
34335058 GCACGTAGAGGGGGACTGGGCCAGTCCCC
130 GCACGGAGAGGGGGACTGGGCCAGTCCCC
* * * * * * * * *
34335087 GACTTATGCATTATGCCTCTTCGGTCGGCTCAGCGCCTGGACGCTCATTTCATGGGTTGACTTAT
1 G-CTTGTGCATTATGCCTCTCCGATCGACTGAGCGCCTGCACGCCCATTTCATGGGTTGGCTTAG
* *
34335152 GCATACGAAGTTCATTCC-TAGTCTAAG
65 GCATAGGGAGTTCATTCCAT-GTCTAAG
34335179 ATCAAACCGG
Statistics
Matches: 214, Mismatches: 33, Indels: 6
0.85 0.13 0.02
Matches are distributed among these distances:
158 2 0.01
159 210 0.98
160 2 0.01
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.26
Consensus pattern (158 bp):
GCTTGTGCATTATGCCTCTCCGATCGACTGAGCGCCTGCACGCCCATTTCATGGGTTGGCTTAGG
CATAGGGAGTTCATTCCATGTCTAAGCCCTAGTCAGACCGAGTGTTGTGGCAGCGAGACCGGCAG
CACGGAGAGGGGGACTGGGCCAGTCCCC
Found at i:34336407 original size:26 final size:26
Alignment explanation
Indices: 34336378--34336430 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
34336368 GATGGCTTAG
*
34336378 GCATACGGAGTTCACT-CCATGTCTAA
1 GCATACAGAGTTCACTCCCA-GTCTAA
*
34336404 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCACTCCCAGTCTAA
34336430 G
1 G
34336431 ATCAGGCCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCACTCCCAGTCTAA
Found at i:34336924 original size:26 final size:26
Alignment explanation
Indices: 34336890--34336942 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34336880 GTTGGCTTAG
34336890 GCATACAGAGTTCATTC-CATGTCTAA
1 GCATACAGAGTTCATTCGCA-GTCTAA
*
34336916 GCATGCAGAGTTCATTCGCAGTCTAA
1 GCATACAGAGTTCATTCGCAGTCTAA
34336942 G
1 G
34336943 AATTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCGCAGTCTAA
Found at i:34337986 original size:159 final size:160
Alignment explanation
Indices: 34337572--34337994 Score: 406
Period size: 159 Copynumber: 2.7 Consensus size: 160
34337562 CCTCTCTGGT
* * * * *
34337572 CGGCTCAGCACCCGTACGTCCGTTTCATGGGTTGGCTTAGGTATAGGGAGTTCATTCCATGTCTA
1 CGGCTCAGCGCCCGTACGTTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
* * * * * * * *
34337637 AGCCCCA-ACTGGACTAAGGGTTGTGGCAGCAGGA-CCAGTAGCACGCAGAGGGGGATCGGGTCG
66 AGCCCCAGACTAGACTGAGGGTTGTGGCAGCAGGATCGA-CAGCACACAGAGGGGGACCGGGCCA
* * * * *
34337700 ATCCCCGGCTTGTGCATTATGCCTCTTCGAT
130 ATCCACGGCTTGCGCATTATGCCTCTCCAAC
* * * * * ** * *
34337731 CGGTTTAGCGCCCGCACGCTCATTTCGTGGGTTAACTTCGACATACGGAGTTCATTCC-TAGTCT
1 CGGCTCAGCGCCCGTACGTTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCT
** * * * * * *
34337795 AAG-ATCGGACTAGACTGAGAGATGCGGTAGCAGGATCGACAGCACACAGGGGGGGACCGGGCCA
65 AAGCCCCAGACTAGACTGAGGGTTGTGGCAGCAGGATCGACAGCACACAGAGGGGGACCGGGCCA
* *
34337859 ATCCACGGCTTGCGTATTTTGCCTCTCCAAC
130 ATCCACGGCTTGCGCATTATGCCTCTCCAAC
* * *
34337890 CGGCTGAGCGCCCGTACGTTTGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
1 CGGCTCAGCGCCCGTACGTTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
* * *
34337955 TGCCCCAGTC-AGACCGAGGGTTGTGGCAGCAGGATCGACA
66 AGCCCCAGACTAGACTGAGGGTTGTGGCAGCAGGATCGACA
34337995 ATGGTATCTT
Statistics
Matches: 201, Mismatches: 58, Indels: 10
0.75 0.22 0.04
Matches are distributed among these distances:
158 2 0.01
159 193 0.96
160 6 0.03
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (160 bp):
CGGCTCAGCGCCCGTACGTTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
AGCCCCAGACTAGACTGAGGGTTGTGGCAGCAGGATCGACAGCACACAGAGGGGGACCGGGCCAA
TCCACGGCTTGCGCATTATGCCTCTCCAAC
Found at i:34338644 original size:163 final size:160
Alignment explanation
Indices: 34338238--34338644 Score: 369
Period size: 163 Copynumber: 2.5 Consensus size: 160
34338228 CCCCAACTTC
* * * * * *
34338238 CGCATTCTGCCTCTCCAATCGGTTGAGCTCCCGCACGCCCGTTTTGTGGGTTTGCTTAGGCATAG
1 CGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCGTTTTGTGGGTTGGCTTAGGCATAC
* * * * ***
34338303 GGACTTCATTCCATGTCT-A-ACCCCAGTCGGACCAAGGGTTGTGGCAATGGGACCGACAGCACA
66 GGAGTTCATTCCATGTCTAAGACACCAGTCAGACCAAGGGTTGTGACAACAAGACCGACAGCACA
* *
34338366 CAGAGGGGCACAAGGTCGATCCCTGGCTTG
131 CAGAGGGGCACAAGCTCGATCCCTGGCTTA
* ** * * ** ** * *
34338396 CGCATTATGCCTCTTGGACCGGCTCAGCGCCCGCACGCTTATTTCATGGGTTGAG-ATATGCATA
1 CGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCGTTTTGTGGGTTG-GCTTAGGCATA
* * * *
34338460 CAGAGTTCATTCCCA-GTCTAAGATCGGATCGGATCAGACCAAGGGTTGTGACAACAAGATCGAC
65 CGGAGTTCATT-CCATGTCTAAGA-C--ACCAG-TCAGACCAAGGGTTGTGACAACAAGACCGAC
* * * *
34338524 AGCGCGCAG-GGGGGATCGAGCT-GAT-CCTCGGCTTA
125 AGCACACAGAGGGGCA-CAAGCTCGATCCCT-GGCTTA
*
34338559 CGCATTCTGCCTCTCCGATCAGCTGAGCGCCCGCACGCTCGTTTTGTGGGTTGGCTTAGGCATAC
1 CGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCGTTTTGTGGGTTGGCTTAGGCATAC
*
34338624 GGAGTTCATTCAATGTCTAAG
66 GGAGTTCATTCCATGTCTAAG
34338645 CATACGGAGT
Statistics
Matches: 189, Mismatches: 48, Indels: 19
0.74 0.19 0.07
Matches are distributed among these distances:
158 58 0.31
159 5 0.03
160 1 0.01
161 1 0.01
162 6 0.03
163 82 0.43
164 36 0.19
ACGTcount: A:0.20, C:0.28, G:0.28, T:0.24
Consensus pattern (160 bp):
CGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCGTTTTGTGGGTTGGCTTAGGCATAC
GGAGTTCATTCCATGTCTAAGACACCAGTCAGACCAAGGGTTGTGACAACAAGACCGACAGCACA
CAGAGGGGCACAAGCTCGATCCCTGGCTTA
Found at i:34339386 original size:26 final size:26
Alignment explanation
Indices: 34339350--34339400 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
34339340 GTTGACTTAG
34339350 GCATACGGAGTTCATCCCCAGTCTAT
1 GCATACGGAGTTCATCCCCAGTCTAT
*
34339376 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATCCCCAGTCTA
34339401 AGATCAGACT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAT
Found at i:34339771 original size:159 final size:157
Alignment explanation
Indices: 34339376--34339881 Score: 457
Period size: 159 Copynumber: 3.2 Consensus size: 157
34339366 CCCAGTCTAT
* * ** *
34339376 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGACTGGACCGAGGGTTGCGGCAATAGGATCAAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGAC
* * * * *
34339440 AGCACGCAGGGGAGACCGGGTCGATCCCCGGCTTGCGCATTCTACCTCTCTGACCGACTGAGTGC
65 AGCACGCGGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTACCTCTCCGGCCGACTGAGCGC
* * *
34339505 CCGCACG-TC-TATTTCATGGTTTTGCTTAG
130 CTGTACGCTCGT-TTT-ATGG-GTTGCTTAG
* * ** * * * *
34339534 GCATAGGGAGTTCATTCTATGTCTAAGCCCTAG-CCAGACCGAGGATTGTGGCAGCGGGATCGGC
1 GCATACGGAGTTCATTCCATGTCTAAGATC-AGACCGGACCGAGGGTTGTGGCAGCAGGATCGAC
* * * * * * * *
34339598 AGCACGTAGAGGGGGATCGGGTCGATCCCCGGATTGCGCATTATGCCTCTCCGGTCGACTTAGCG
65 AGCACG-CGGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTACCTCTCCGGCCGACTGAGCG
*
34339663 CCTGTACGCTCGTTTTGTGGGTTGACTTAG
129 CCTGTACGCTCGTTTTATGGGTTG-CTTAG
* * *
34339693 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGACCGGACCGAGGGTTGTGGTAGCAGGATTGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGAC
* * * * * * *
34339757 AGCACGCGGGGGGGGGGGGCTGGGCCGATCCCTGGCTTGCACATTCTACCTCTCCTGCCGGCTGA
65 AGCACGC----GGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTACCTCTCCGGCCGACTGA
* *
34339822 GCGCTTGTACGCTCGTTTCATGGGTTGGCTT-G
126 GCGCCTGTACGCTCGTTTTATGGGTT-GCTTAG
*
34339854 GTCATACGGTGTTCATTCCATGTCTAAG
1 G-CATACGGAGTTCATTCCATGTCTAAG
34339882 CATATGGAGT
Statistics
Matches: 273, Mismatches: 60, Indels: 26
0.76 0.17 0.07
Matches are distributed among these distances:
157 2 0.01
158 55 0.20
159 115 0.42
160 7 0.03
161 6 0.02
162 87 0.32
163 1 0.00
ACGTcount: A:0.18, C:0.26, G:0.31, T:0.25
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGACA
GCACGCGGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTACCTCTCCGGCCGACTGAGCGCC
TGTACGCTCGTTTTATGGGTTGCTTAG
Found at i:34341100 original size:157 final size:157
Alignment explanation
Indices: 34340608--34341091 Score: 481
Period size: 159 Copynumber: 3.1 Consensus size: 157
34340598 AAGCATACAA
* * ** *
34340608 AGTTCATTCCCAATCTAAGATTAGACTGGATCGAGGGTTGTGGCAGCAGGATCAACAGCACACGG
1 AGTTCATTCCCAATCTAAGATCAGACTGGACCGAGGGTTGTGGCAGCAGGATTGACAGCACGCGG
* * *
34340673 GGGGGACCGAGTAGATCCCTGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGTGCCCGCACG-T
66 GGGGGTCAG-GTAGATCCCTGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGTGCCCGTACGCT
* * *
34340737 CCGTTTCATGGTTTTG-CTTAGGCATAGGG
130 -CGTTTCGTGG-GTTGACTTAGGCATACGG
* * ** * * * * * **
34340766 AGTTCATT-CTATGTCTAAGCCCTAG-CTAGTCTGAGGATTGTGGCAGCGGGATTGGTAGCACGC
1 AGTTCATTCCCA-ATCTAAGATC-AGACTGGACCGAGGGTTGTGGCAGCAGGATTGACAGCACGC
* ** * * * ** *
34340829 AGAGGGGGATTGGGTTGATCCCCGGCTTGCGCATTATGCCTCTCCGGTCGGCTCAGTGCCCGTAC
64 -G-GGGGGGTCAGGTAGATCCCTGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGTGCCCGTAC
*
34340894 GCTCGTTTGGTGGGTTGACTTAGGCATACGG
127 GCTCGTTTCGTGGGTTGACTTAGGCATACGG
* *
34340925 AGTTCTTTCCCAATCTAAGATCAGACTGGACCGAGGGTTGTGGTAGCAGGATTGACAGCACGCGG
1 AGTTCATTCCCAATCTAAGATCAGACTGGACCGAGGGTTGTGGCAGCAGGATTGACAGCACGCGG
** * * ** * *
34340990 GGGGGTCAGGCCGATCCCTGGCTTGCACATTCTGCCTCTTCGACCGATTGAGCGCCTGTACGCTC
66 GGGGGTCAGGTAGATCCCTGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGTGCCCGTACGCTC
* *
34341055 GTTTTGTGGGTTGACTTAGTCATACGG
131 GTTTCGTGGGTTGACTTAGGCATACGG
34341082 AGTTCATTCC
1 AGTTCATTCC
34341092 ATGTCTAAGC
Statistics
Matches: 255, Mismatches: 63, Indels: 17
0.76 0.19 0.05
Matches are distributed among these distances:
157 86 0.34
158 47 0.18
159 113 0.44
160 9 0.04
ACGTcount: A:0.18, C:0.25, G:0.31, T:0.26
Consensus pattern (157 bp):
AGTTCATTCCCAATCTAAGATCAGACTGGACCGAGGGTTGTGGCAGCAGGATTGACAGCACGCGG
GGGGGTCAGGTAGATCCCTGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGTGCCCGTACGCTC
GTTTCGTGGGTTGACTTAGGCATACGG
Found at i:34341300 original size:26 final size:26
Alignment explanation
Indices: 34341271--34341322 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
34341261 TTGGCTTAGT
34341271 CATACGAAGTTCATTCC-ATGTCTAAG
1 CATACGAAGTTCATTCCTAT-TCTAAG
*
34341297 CATACGGAGTTCATTCCTATTCTAAG
1 CATACGAAGTTCATTCCTATTCTAAG
34341323 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.29, C:0.23, G:0.15, T:0.33
Consensus pattern (26 bp):
CATACGAAGTTCATTCCTATTCTAAG
Found at i:34341353 original size:196 final size:195
Alignment explanation
Indices: 34340971--34341528 Score: 681
Period size: 196 Copynumber: 2.8 Consensus size: 195
34340961 GTTGTGGTAG
* * ** * * * *
34340971 CAGGATTGACAGCACGC-GGGGGGGTCAGGCCGATCCCTGGCTTGCACATTCTGCCTCTTCGACC
1 CAGGATCGACAGCATGCAGGGGGGACCGGGCCTATCCCTGGCTTGCGCATTCTGCCTCTCCGACC
* * * * *
34341035 GATTGAGCGCCTGTACGCTCGTTTTGTGGGTTGACTTAGTCATACGGAGTTCATTCCATGTCTAA
66 GATTGAGCGCCTATACACTCGTTTCGTGGGTTGGCTTAGTCATACGAAGTTCATTCCATGTCTAA
* * * *
34341100 GCATACGGAGTTCAATCCCATTTTAAGATCGGACCAGACCAAGGGTTATGGTAGCATGACCAGCA
131 GCATACGGAGTTC-ATTCCATTCTAAGATCGGACCAGACCAAGGGTTACGATAGCATGACCAGCA
*
34341165 G
195 A
* * * * * **
34341166 TAGGATCGATAGCATGCAGGGTGGACCGGGCCTATCCCTAGCTTGCGCCTTCTGCCTCTCCGGTC
1 CAGGATCGACAGCATGCAGGGGGGACCGGGCCTATCCCTGGCTTGCGCATTCTGCCTCTCCGACC
34341231 GATTGAGCGCCTATACACTCGTTTCGTGGGTTGGCTTAGTCATACGAAGTTCATTCCATGTCTAA
66 GATTGAGCGCCTATACACTCGTTTCGTGGGTTGGCTTAGTCATACGAAGTTCATTCCATGTCTAA
34341296 GCATACGGAGTTCATTCCTATTCTAAGATCGGACCAGACCAAGGGTTACGATAGCATGACCAGCA
131 GCATACGGAGTTCATTCC-ATTCTAAGATCGGACCAGACCAAGGGTTACGATAGCATGACCAGCA
34341361 A
195 A
* *
34341362 CAGGATCGACAGCATGTAGGGGGGACCGAGCCTAT-CCTCGGCTTGCGCATTCTGCCTCTCCGAC
1 CAGGATCGACAGCATGCAGGGGGGACCGGGCCTATCCCT-GGCTTGCGCATTCTGCCTCTCCGAC
* * * *
34341426 CGGTTGAGCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAC-AGAGTTCATT
65 CGATTGAGCGCCT-A-TA----CA--CTCGTTTCGTGGGTTGGCTTAGTCATACGA-AGTTCATT
* *
34341490 CCATGTCTAAGCATACGGAGTTAATTTCCAGTCTAAGAT
121 CCATGTCTAAGCATACGGAGTTCA-TTCCATTCTAAGAT
34341529 TTTGAGCCAC
Statistics
Matches: 310, Mismatches: 40, Indels: 17
0.84 0.11 0.05
Matches are distributed among these distances:
195 20 0.06
196 214 0.69
197 1 0.00
198 1 0.00
202 2 0.01
203 1 0.00
204 67 0.22
205 4 0.01
ACGTcount: A:0.21, C:0.26, G:0.27, T:0.26
Consensus pattern (195 bp):
CAGGATCGACAGCATGCAGGGGGGACCGGGCCTATCCCTGGCTTGCGCATTCTGCCTCTCCGACC
GATTGAGCGCCTATACACTCGTTTCGTGGGTTGGCTTAGTCATACGAAGTTCATTCCATGTCTAA
GCATACGGAGTTCATTCCATTCTAAGATCGGACCAGACCAAGGGTTACGATAGCATGACCAGCAA
Found at i:34341510 original size:26 final size:26
Alignment explanation
Indices: 34341474--34341526 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
34341464 GTTGGCTTAG
*
34341474 GCATACAGAGTTCA-TTCCATGTCTAA
1 GCATACAGAGTTAATTTCCA-GTCTAA
*
34341500 GCATACGGAGTTAATTTCCAGTCTAA
1 GCATACAGAGTTAATTTCCAGTCTAA
34341526 G
1 G
34341527 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTAATTTCCAGTCTAA
Found at i:34342220 original size:26 final size:26
Alignment explanation
Indices: 34342191--34342244 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
34342181 TGGGTTGACA
34342191 TAGGCATACT-GAGCTCATCCCCAGTC
1 TAGGCATA-TGGAGCTCATCCCCAGTC
* *
34342217 TAGGCATATGGAGTTCATTCCCAGTC
1 TAGGCATATGGAGCTCATCCCCAGTC
34342243 TA
1 TA
34342245 AGATCGAACA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (26 bp):
TAGGCATATGGAGCTCATCCCCAGTC
Found at i:34342616 original size:171 final size:170
Alignment explanation
Indices: 34342217--34342618 Score: 411
Period size: 171 Copynumber: 2.4 Consensus size: 170
34342207 ATCCCCAGTC
* * * *
34342217 TAGGCATATGGAGTTCATTCCCAGTCTAAGATC-GAACAAGAA-TGAGGGTTC-GATAGTAGGAC
1 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCTGGAC-AGAACTGAGGGTTCTG-CAGCAGGAC
* * * * *
34342279 CAGCAGCAGGATCGACAGCATAAAGAGGGGATCGGGCCGATCCCTGGCCTGCGCATTTTGCCTTT
64 CAGCAGCAGGATCGACAGCACAAAGAGGGGATCGGGCCGATCCCTGACCTACGCATTATGCCTCT
* * * * *
34342344 CTAGCCGGTTGAGTGCCCGCATGCTCATTTCATGGGTTGGCT
129 CCAGCCGGCTCAGTGCCCGCACGCTCATTTCATGGGTTGACT
** * * * * *
34342386 TAGGCATACGGAGTTCATT-CCATGTCTAAGCCCTAGTCAGATC-AAGGGTTATGGCAGCAGGAC
1 TAGGCATACGGAGTTCATTCCCA-GTCTAAGATCTGGACAGAACTGAGGGTTCT-GCAGCAGGAC
** ** ** * *
34342449 TGGCAGTGGGATCGACAGCACGCAGAGGGGGATCGGGCTGATCCCTGACTTACGCATTATGCCTC
64 CAGCAGCAGGATCGACAGCACAAAGA-GGGGATCGGGCCGATCCCTGACCTACGCATTATGCCTC
* **
34342514 TCCAGCTGGCTCAGTGCCCGCACGCTCATTTTGTGGGTTGACT
128 TCCAGCCGGCTCAGTGCCCGCACGCTCATTTCATGGGTTGACT
*
34342557 TAGGCATACGGAGTTCATTCCCAGTCTAAG-TCTGGACCGAACTGAGGGTTGCTGCAGCAGGA
1 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCTGGACAGAACTGAGGGTT-CTGCAGCAGGA
34342619 TAGACAGCAC
Statistics
Matches: 185, Mismatches: 39, Indels: 16
0.77 0.16 0.07
Matches are distributed among these distances:
168 3 0.02
169 35 0.19
170 34 0.18
171 109 0.59
172 4 0.02
ACGTcount: A:0.22, C:0.24, G:0.30, T:0.24
Consensus pattern (170 bp):
TAGGCATACGGAGTTCATTCCCAGTCTAAGATCTGGACAGAACTGAGGGTTCTGCAGCAGGACCA
GCAGCAGGATCGACAGCACAAAGAGGGGATCGGGCCGATCCCTGACCTACGCATTATGCCTCTCC
AGCCGGCTCAGTGCCCGCACGCTCATTTCATGGGTTGACT
Found at i:34342753 original size:26 final size:26
Alignment explanation
Indices: 34342717--34342769 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
34342707 GTTGGCTTAG
* *
34342717 GCATATGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
*
34342743 GCATACGGAGTTCATTCCCTATCTAA
1 GCATACGGAGTTCATTCCATATCTAA
34342769 G
1 G
34342770 ATCAGACCAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:34343134 original size:26 final size:26
Alignment explanation
Indices: 34343098--34343150 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
34343088 GTTGACTTAG
34343098 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
34343124 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
34343150 G
1 G
34343151 ATCGAACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:34343505 original size:159 final size:158
Alignment explanation
Indices: 34343124--34343532 Score: 381
Period size: 159 Copynumber: 2.6 Consensus size: 158
34343114 CCCAGTCTAA
* * * * *
34343124 GCATACAGAGTTCATTCCCAGTCTAAGATCGAACCGGATCGAGGGTTGCAGTAGCAAGATCGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGTAGCAGGATCGATA
* * * * * * *
34343189 GCATGTAGGGGGGACCGAGCCGATCCCCAGCTTGTGGATTTTGCCTCTCTAATCGGTTGAGTGCC
66 GCACGCAGGGGGGACCGAGCCGATCCCCAGCTTGTAGATTATGCCTCTCTAATCAGCTCAGTGCC
* * * *
34343254 CGTACACCCATTTCGTTGGTTGGCTTAG
131 CGCACACCCATTTCATGGGTTGACTTAG
* ** * ** * * * *
34343282 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAGTCAGACCGAGGGTTGTGGTAGCGGGACCGAT
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCGAACCGGACCGAGGGTTGCGGTAGCAGGATCGAT
* * * ** * **
34343346 AGCACGCAGAGGGGTATCGGGTTGATCCTC-GACTTGTAGATTATGCCTCTCTGGTCAGCTCAGT
65 AGCACGCAG-GGGGGACCGAGCCGATCCCCAG-CTTGTAGATTATGCCTCTCTAATCAGCTCAGT
* * * * *
34343410 TCTCGCACGCTCGTTTCATGGGTTGACTTAG
128 GCCCGCACACCCATTTCATGGGTTGACTTAG
* *
34343441 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGTAGCAGGATCGATA
* * *
34343506 GCACGCAGGGAGGACCGCGTCGATCCC
66 GCACGCAGGGGGGACCGAGCCGATCCC
34343533 TGGCTTGTGT
Statistics
Matches: 190, Mismatches: 57, Indels: 8
0.75 0.22 0.03
Matches are distributed among these distances:
157 3 0.02
158 66 0.35
159 118 0.62
160 3 0.02
ACGTcount: A:0.21, C:0.25, G:0.31, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGTAGCAGGATCGATA
GCACGCAGGGGGGACCGAGCCGATCCCCAGCTTGTAGATTATGCCTCTCTAATCAGCTCAGTGCC
CGCACACCCATTTCATGGGTTGACTTAG
Found at i:34343628 original size:26 final size:26
Alignment explanation
Indices: 34343599--34343651 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
34343589 GTTGGCTTAG
34343599 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
34343625 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
34343651 G
1 G
34343652 ATCGGACCAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:34343766 original size:184 final size:184
Alignment explanation
Indices: 34343441--34343810 Score: 485
Period size: 184 Copynumber: 2.0 Consensus size: 184
34343431 GTTGACTTAG
** *
34343441 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAAACCGAGGGTTGCGGCAGCAGGATCGACA
* * * * * * * *
34343506 GCACGCAGGGAGGACCGCGTCGATCCCTGGCTTGTGTGTTCTACCTCTCCAGATGACTGAGCGCC
66 GCACGCAGGGAGGACAGCGCCAATCCCTAGCTTGCGTATTCTACCTCTCCAGACGACTGAGCACC
* * * *
34343571 CGTACGCTCGTTTTGA-GGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
131 CGTACGCTCG-TTTCATGGGTTCGCCTAGGCATACAGAGTTCATTCCATGTCTAA
* *
34343625 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAAATCGAGGGTTGCGGCAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAAACCGAGGGTTGCGGCAGCAGGATCGACA
* * * **
34343690 GCACGCAGGGGGGATCAG-GCCAAT-CCTCAGCTTGCGTATTCTGCCTCTCCAGCCGGTTGAGCA
66 GCACGCAGGGAGGA-CAGCGCCAATCCCT-AGCTTGCGTATTCTACCTCTCCAGACGACTGAGCA
*
34343753 CCCGTATGCTCGTTTCATGGGTTCGCCTAGGCATACAGAGTTCATTCCATGTCTAA
129 CCCGTACGCTCGTTTCATGGGTTCGCCTAGGCATACAGAGTTCATTCCATGTCTAA
34343809 GC
1 GC
34343811 CCCAGTCGAA
Statistics
Matches: 160, Mismatches: 23, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
183 7 0.04
184 151 0.94
185 2 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.24
Consensus pattern (184 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAAACCGAGGGTTGCGGCAGCAGGATCGACA
GCACGCAGGGAGGACAGCGCCAATCCCTAGCTTGCGTATTCTACCTCTCCAGACGACTGAGCACC
CGTACGCTCGTTTCATGGGTTCGCCTAGGCATACAGAGTTCATTCCATGTCTAA
Found at i:34344425 original size:159 final size:158
Alignment explanation
Indices: 34344216--34344636 Score: 439
Period size: 159 Copynumber: 2.7 Consensus size: 158
34344206 GAGGGGGACT
* * * * * * * * *
34344216 GGGCCGATCCTCGACTTACGCGTTATGCCTTTTCGGCTAGCTCAGTGCCCGCACGCTCGTTTCGT
1 GGGCCGATCCCCAACTTACACATTATGCCTCTCCGACCAGCTCAGTGCCCGCACACTCGTTTCGT
* * *
34344281 GGGTTGACTTAGGCATGCGAAGTTCATTCCTAGTCTAAGATCGGATCAGACCGAGGGTTGCAGCA
66 GGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGATCAGACCGAGGGTTGCAGCA
* * *
34344346 ATAGGATTGATAGCACGCAAAAAGGGATC
131 ATAGGATCGACAACACGC-AAAAGGGATC
* * * * * *
34344375 GGGCCGATCCCCAACTTACGCATTATGCCTCTCCGATCGGCTCAGTGCCCGTACACTTGTTTCAT
1 GGGCCGATCCCCAACTTACACATTATGCCTCTCCGACCAGCTCAGTGCCCGCACACTCGTTTCGT
* * * * *
34344440 GGGTTGACTTAGGCATATGGAGTTCATTCCTAATTTGAGATCAGATCAGACCGAGGGTTGCGGCA
66 GGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGATCAGACCGAGGGTTGCAGCA
* ***
34344505 ATAGGATCGACAACATGCAGGGGGGATC
131 ATAGGATCGACAACACGCAAAAGGGATC
* * * * * * * * * *
34344533 GGGCCGATCCTCAGCTTGCACATTCTGCCTCTTCGACCAACTGAGCGGCCGCACACTCGTTTCGA
1 GGGCCGATCCCCAACTTACACATTATGCCTCTCCGACCAGCTCAGTGCCCGCACACTCGTTTCGT
* *
34344598 GGGTTGGCTTAGACATACGGAGTTCATTCC-ATGTCTAAG
66 GGGTTGACTTAGGCATACGGAGTTCATTCCTA-GTCTAAG
34344637 CATATGGAGT
Statistics
Matches: 211, Mismatches: 50, Indels: 3
0.80 0.19 0.01
Matches are distributed among these distances:
157 1 0.00
158 87 0.41
159 123 0.58
ACGTcount: A:0.22, C:0.26, G:0.27, T:0.25
Consensus pattern (158 bp):
GGGCCGATCCCCAACTTACACATTATGCCTCTCCGACCAGCTCAGTGCCCGCACACTCGTTTCGT
GGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGATCAGACCGAGGGTTGCAGCA
ATAGGATCGACAACACGCAAAAGGGATC
Found at i:34344647 original size:26 final size:26
Alignment explanation
Indices: 34344611--34344662 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
34344601 TTGGCTTAGA
34344611 CATACGGAGTTCATTCC-ATGTCTAAG
1 CATACGGAGTTCATTCCTA-GTCTAAG
*
34344637 CATATGGAGTTCATTCCTAGTCTAAG
1 CATACGGAGTTCATTCCTAGTCTAAG
34344663 ATCAGACTAG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.33
Consensus pattern (26 bp):
CATACGGAGTTCATTCCTAGTCTAAG
Found at i:34345503 original size:26 final size:26
Alignment explanation
Indices: 34345469--34345521 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34345459 GTTGGCTTAG
34345469 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
34345495 GCATTCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
34345521 G
1 G
34345522 ATCGAACTAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:34345817 original size:26 final size:25
Alignment explanation
Indices: 34345779--34345830 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
34345769 GTTGACTTAG
34345779 GCATACGAGTTCATCCCCAGTCTAA
1 GCATACGAGTTCATCCCCAGTCTAA
*
34345804 GCATACGGAGTTCATCCTCAGTCTAA
1 GCATAC-GAGTTCATCCCCAGTCTAA
34345830 G
1 G
34345831 ATCGAATCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 6 0.24
26 19 0.76
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (25 bp):
GCATACGAGTTCATCCCCAGTCTAA
Found at i:34346181 original size:159 final size:159
Alignment explanation
Indices: 34346018--34346305 Score: 355
Period size: 159 Copynumber: 1.8 Consensus size: 159
34346008 TTTGGCAGCG
** * * *
34346018 GGATCGACAGCACGTAGAGGGGGA-CTGGACAGATCCCTAACTTGCGTATTATGCCTCTTCGACT
1 GGATCGACAGCACACAGAGGGGGATC-GGACAGATCCCCAACTTACGTATTATGCCTCTCCG-CT
* *
34346082 -GGCTCAATGCCCGCACGCTCATTTCATGGGTTGACTTATGCATACGGAGTTCATTCCAAGTCTA
64 AGGCTCAACGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCAAGTCTA
34346146 AAATTGCACCGGACCAAGGGTTGTGATAGTA
129 AAATTGCACCGGACCAAGGGTTGTGATAGTA
* * * ** * *
34346177 GGATCGACAGCACACAGGGGGGGATCGGGCCGATCCCCGGCTTACGTATTCTGCCTCTCCGGTAG
1 GGATCGACAGCACACAGAGGGGGATCGGACAGATCCCCAACTTACGTATTATGCCTCTCCGCTAG
* * * * * * *
34346242 GCTGAGCGCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
66 GCTCAACGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCAAGTCTAA
34346306 GCATACGGAG
Statistics
Matches: 106, Mismatches: 21, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
158 1 0.01
159 104 0.98
160 1 0.01
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.25
Consensus pattern (159 bp):
GGATCGACAGCACACAGAGGGGGATCGGACAGATCCCCAACTTACGTATTATGCCTCTCCGCTAG
GCTCAACGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCAAGTCTAAA
ATTGCACCGGACCAAGGGTTGTGATAGTA
Found at i:34346309 original size:26 final size:26
Alignment explanation
Indices: 34346280--34346332 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
34346270 GTTGGCTTAG
34346280 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
34346306 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
34346332 G
1 G
34346333 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:34347031 original size:26 final size:26
Alignment explanation
Indices: 34347001--34347053 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
34346991 GTTGACTTAG
34347001 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
34347027 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
34347053 G
1 G
34347054 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:34347581 original size:26 final size:26
Alignment explanation
Indices: 34347552--34347604 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
34347542 GTTACCTTAG
*
34347552 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
34347578 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
34347604 G
1 G
34347605 AGCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:34347765 original size:26 final size:26
Alignment explanation
Indices: 34347736--34347788 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
34347726 GTTAACTTAC
*
34347736 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTAATCCCCAGTCTAA
* *
34347762 GCATATGGAGTTAATTCCCAGTCTAA
1 GCATACGGAGTTAATCCCCAGTCTAA
34347788 G
1 G
34347789 ATAAGACTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTAATCCCCAGTCTAA
Found at i:34348662 original size:26 final size:26
Alignment explanation
Indices: 34348617--34348668 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
34348607 TTGACTTAGT
*
34348617 CATACGGAGTTCATCGCCAGTCTAAG
1 CATACGGAGTTCATCGCCAGTATAAG
*
34348643 CATATGGAGTTCATTC-CCAGTATAAG
1 CATACGGAGTTCA-TCGCCAGTATAAG
34348669 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATCGCCAGTATAAG
Found at i:34349363 original size:286 final size:275
Alignment explanation
Indices: 34348776--34349555 Score: 852
Period size: 286 Copynumber: 2.8 Consensus size: 275
34348766 AGCACCCGTT
* * *
34348776 CGCCTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCGCTAGCCAGACCG
1 CGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCG
* * * * *
34348841 AGGGTTCTGGCAAT-GGGACCGGTAGCACACAGAGAGGGACCAAACTGGTAGCACACACATTTTA
66 AGGGTTCTGGCAATGGGGACCGGTAGCACACAGAGAGGGACCAGACCGGTAGCACACTCGTTTCA
* * *
34348905 TGGGTTGACTTAGGCATACAGAGTTCATT-CCAGTCTAAGATCGAATCGGATCGAGGGTTGTGGC
131 TGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCG-ATCGGA-CCAAGGTTGCGGC
* * * * *
34348969 AGCAGGATCGACAATACGCAGGGGGGATCGAGCCGATCCCCGGCTTACGCATTCTGCCTCTCTAA
194 AGCAAGATCGACAACACGCAGAGGGGATCGAGCCGATCCCCGGCTTACACATTCTGCCTCTCCAA
* *
34349034 CCAGCTGAACGCCCGTA
259 CCAGCTGAACACCCGCA
* * *
34349051 TGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCTTGTTTAAGCCCCAGCCAGACCG
1 CGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACC-
* * * * *
34349116 AGCAATGGGATCGATAGCACATAGAGAGGACTGATAGCACACAGAGAGGGACCGGACCGGTAGCA
65 -G--A-GGGTTC--TGGCA-AT-G-G-GGACCGGTAGCACACAGAGAGGGACCAGACCGGTAGCA
* * * *
34349181 CGCTCGTTTCATGGGTTGAATTTGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCA
120 CACTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATC-GATCGGACCA
* ** * * * * *
34349246 AGGTTGCGGTAGCAAGATCGGTAGCACGTA-AGGGGATCGGGCCGATCCTCGGCTTGCACATTCT
184 AGGTTGCGGCAGCAAGATCGACAACACGCAGAGGGGATCGAGCCGATCCCCGGCTTACACATTCT
*** * * * *
34349310 GCCTCTCCGGTCGGTTGAGCACCTGCA
249 GCCTCTCCAACCAGCTGAACACCCGCA
* * *
34349337 CGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG-CCCAGCTACACCG
1 CGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCG
*
34349401 AGGGTTCTGGTAATGGGGACCGGTAGCACACAGAGAGGGACCAGACCGGTAGCA-ATCTCGTTTC
66 AGGGTTCTGGCAATGGGGACCGGTAGCACACAGAGAGGGACCAGACCGGTAGCACA-CTCGTTTC
* ** ** *
34349465 GTCAGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGTGTGTTACGG
130 ATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATC-GATCGGACCAAG-GTTGCGG
* *
34349530 CAACAAGATCGACAGCACGCA-AGGGG
193 CAGCAAGATCGACAACACGCAGAGGGG
34349556 GACCGGACTG
Statistics
Matches: 416, Mismatches: 73, Indels: 32
0.80 0.14 0.06
Matches are distributed among these distances:
274 91 0.22
275 86 0.21
276 1 0.00
277 3 0.01
278 3 0.01
279 1 0.00
280 10 0.02
281 1 0.00
282 4 0.01
283 3 0.01
285 10 0.02
286 94 0.23
287 89 0.21
288 19 0.05
289 1 0.00
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.22
Consensus pattern (275 bp):
CGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCG
AGGGTTCTGGCAATGGGGACCGGTAGCACACAGAGAGGGACCAGACCGGTAGCACACTCGTTTCA
TGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGATCGGACCAAGGTTGCGGCAG
CAAGATCGACAACACGCAGAGGGGATCGAGCCGATCCCCGGCTTACACATTCTGCCTCTCCAACC
AGCTGAACACCCGCA
Found at i:34350062 original size:184 final size:182
Alignment explanation
Indices: 34349737--34350083 Score: 435
Period size: 184 Copynumber: 1.9 Consensus size: 182
34349727 ATGCATATGG
* * *
34349737 AGTTCATTCCCAATCCAAGATCAGATCAGATCGAGGGTTGCGGTAGCAGGATCGATAGCGCAGGG
1 AGTTCATTCCCAATCCAAGATCAGACCAGATCGAGGGTTACGGCAGCAGGATCGATAGCGCAGGG
* ** *
34349802 GGGACCAAGCTGATCCCTGGCTTGTGCATTCTACCTCTCCGGCCGGTTGAGCGCCCACACGCTCA
66 GGGACCAAGCTGATCCCTGGCTTGCGCATTCTACCTCTCCGGCCGACTCAGCGCCCACACGCTCA
*
34349867 TTTCATGGGTTGGGTTAGCCATATAAAGTTCATCCCTAGTCTAAGCATACGA
131 TTTCATGGGTTGAGTTAGCCATATAAAGTTCATCCCTAGTCTAAGCATACGA
* * * * *
34349919 AGTTCATTGCCAGTCTAAGATCAGACCGGATCGAGGGTTACGGCAGCAGGATCGGTAGCACGCAG
1 AGTTCATTCCCAATCCAAGATCAGACCAGATCGAGGGTTACGGCAGCAGGATCGATAG--CGCAG
** * * * *
34349984 GGGGGACCGGGCTGATCCCTGGCTTGCGCATTCTGCCTCTTCGGCTGACTCAGCGCCCGTC-CGC
64 GGGGGACCAAGCTGATCCCTGGCTTGCGCATTCTACCTCTCCGGCCGACTCAGCGCCC-ACACGC
* ** * **
34350048 TCGTTTTGTGGGTTGAGTTAGGCATATGGAGTTCAT
128 TCATTTCATGGGTTGAGTTAGCCATATAAAGTTCAT
34350084 TCCCAATCTA
Statistics
Matches: 137, Mismatches: 25, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
182 50 0.36
184 86 0.63
185 1 0.01
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.24
Consensus pattern (182 bp):
AGTTCATTCCCAATCCAAGATCAGACCAGATCGAGGGTTACGGCAGCAGGATCGATAGCGCAGGG
GGGACCAAGCTGATCCCTGGCTTGCGCATTCTACCTCTCCGGCCGACTCAGCGCCCACACGCTCA
TTTCATGGGTTGAGTTAGCCATATAAAGTTCATCCCTAGTCTAAGCATACGA
Found at i:34350276 original size:26 final size:26
Alignment explanation
Indices: 34350240--34350292 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
34350230 GTTGATTTAG
34350240 GCATATGGAGTTAATCCCCAGTCTAA
1 GCATATGGAGTTAATCCCCAGTCTAA
* * *
34350266 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATATGGAGTTAATCCCCAGTCTAA
34350292 G
1 G
34350293 ATTGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTAATCCCCAGTCTAA
Found at i:34350569 original size:159 final size:153
Alignment explanation
Indices: 34350341--34350799 Score: 434
Period size: 159 Copynumber: 3.0 Consensus size: 153
34350331 GCATGTAGGG
* * *
34350341 GGGACCAGGCTGATCCTTGGCTTACGT-ATTCTGCCTC-TCTGATCGACTGAGTGCCCGTACGCT
1 GGGACCAGGCTGATCCCTGGCTTGC-TCATTCTGCCTCTTC-GATCGGCTGAGTGCCCGTA-GCT
* * * *
34350404 CGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCTTGTCTAAGCCCCAGTCGGATCGAGGG
63 CATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGACGGATCGAGGG
*
34350469 TTGTGGCAGCGGGACTGACAGCACGCAAAGA
128 TTGTGGCAGCAGGACTG-CAGCA--C--AGA
* * *
34350500 GGGACCAGGCTGATCCCTGGCTTGCTCATTATGCCTCTTCGGTCGGCTCAGTGCCCGTATGCTCA
1 GGGACCAGGCTGATCCCTGGCTTGCTCATTCTGCCTCTTCGATCGGCTGAGTGCCCGTA-GCTCA
* * * * ** * *
34350565 TTTCGTGGGTTGACTTATGCATACGAAGTTCATTCCCA-ATCTAAG-ATCGGACTGAAGT-GAGG
65 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAGAC-GGA-TCGAGG
** *
34350627 GTTACGGCAGCAGGA-T-C-G-ACAGG
127 GTTGTGGCAGCAGGACTGCAGCACAGA
* * * *
34350650 GGGACCAAG-TCGATCCCTGGCATGCACATTCTGCCTCTCCGATCGGCTGAGTGCCCGTAGCTCA
1 GGGACCAGGCT-GATCCCTGGCTTGCTCATTCTGCCTCTTCGATCGGCTGAGTGCCCGTAGCTCA
* * * * *
34350714 TTTTGTGAGTTGGCTTAGGCATGCGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTT
65 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGACGGATCGAGGGTT
*
34350779 GTGGTAGCAGGACTGGCAGCA
130 GTGGCAGCAGGACT-GCAGCA
34350800 AGATCAGCCG
Statistics
Matches: 240, Mismatches: 46, Indels: 33
0.75 0.14 0.10
Matches are distributed among these distances:
148 3 0.01
149 58 0.24
150 56 0.23
152 2 0.01
153 1 0.00
154 2 0.01
155 1 0.00
156 1 0.00
158 5 0.02
159 106 0.44
160 5 0.02
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.25
Consensus pattern (153 bp):
GGGACCAGGCTGATCCCTGGCTTGCTCATTCTGCCTCTTCGATCGGCTGAGTGCCCGTAGCTCAT
TTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGACGGATCGAGGGTTG
TGGCAGCAGGACTGCAGCACAGA
Found at i:34350968 original size:26 final size:26
Alignment explanation
Indices: 34350916--34350968 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
34350906 GTTGACTTAG
*
34350916 GCATACAGAGTACATCCCTAGTCTAA
1 GCATACAGAGTACATCCCTAGTATAA
* *
34350942 GCATACGGAGTTCATTCCC-AGTATAA
1 GCATACAGAGTACA-TCCCTAGTATAA
34350968 G
1 G
34350969 ATCGGATCCG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTACATCCCTAGTATAA
Found at i:34351441 original size:158 final size:158
Alignment explanation
Indices: 34350942--34351901 Score: 583
Period size: 159 Copynumber: 6.1 Consensus size: 158
34350932 CCTAGTCTAA
* * ** * * * * *
34350942 GCATACGGAGTTCATTCCCAGTATAAGATCGGA-TCCGACCGAGGGTTGCGACAGTAGGATCGAC
1 GCATACGGAGTTCATTCCCAATCTAAGATTAGACT-GGACCGAGGGTTGTGGCAGCAGGATCGGC
* * * * * * * * * **
34351006 ATCACGCAGGG-GGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTC-TCTGGTCGGCTGAGTG
65 AGCACGTAGGGTGGACCGGGCCGATCCTCGACTTACGCATTCTGCCTCTTC-GATCGGCTCAGCA
* * *
34351069 CCCGCACGCCCGTTTCATGGGTTGGCTTAG
129 CCCGCACGCTCGTTTCATGGGTTGACTTAT
* * *** * * * * *
34351099 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CTAGATCGAGGGTGGTAGCAGC-GGCACCG
1 GCATACGGAGTTCATTCCCA-ATCTAAG-ATTAGACTGGACCGAGGGTTGTGGCAGCAGG-ATCG
* * * * * * * * ** *
34351161 ACAGCACGTAGAGGGGGATCGGGCTGATCCCCGACTTGCGCATTATGCCTCTTTGGCCAGCTCAG
63 GCAGCACGTAG-GGTGGACCGGGCCGATCCTCGACTTACGCATTCTGCCTCTTCGATCGGCTCAG
* *
34351226 CACCCGCACGTTCATTTCATGGGTTGACTTAT
127 CACCCGCACGCTCGTTTCATGGGTTGACTTAT
* ** * * * *
34351258 GCATACAGAGTTCATTCATAGTCTAAGATTGGACTAGACCGAGGGTTTTGGCAGCAGGATCGGCA
1 GCATACGGAGTTCATTCCCAATCTAAGATTAGACTGGACCGAGGGTTGTGGCAGCAGGATCGGCA
* * * *
34351323 GCACGTAGGGTGGACAGGGCCGATCCTCGACTTGCACATTCTACCTCTTCGATCGGCTCAGCACC
66 GCACGTAGGGTGGACCGGGCCGATCCTCGACTTACGCATTCTGCCTCTTCGATCGGCTCAGCACC
*
34351388 CGCA-GACTCGTTTCGTGGGTTGACTTAT
131 CGCACG-CTCGTTTCATGGGTTGACTTAT
* * *
34351416 GCATACGGAGTTCATTCCCAATCTAAGATTAGA-TCGGATCGAGGGTTGCGACAGCAGGATC-G-
1 GCATACGGAGTTCATTCCCAATCTAAGATTAGACT-GGACCGAGGGTTGTGGCAGCAGGATCGGC
** * * * * * * ** **
34351478 A-CA-G--GGG-GGACCGGATCGATCC-CTGGCTTACTCATCCTGCCTCTCCGACCGACAGAGTG
65 AGCACGTAGGGTGGACCGGGCCGATCCTC-GACTTACGCATTCTGCCTCTTCGATCGGCTCAGCA
* ** *
34351537 CCTGCACG-TCCGTTTCATGGGTTGGTTTAG
129 CCCGCACGCT-CGTTTCATGGGTTGACTTAT
* * ** * * * * ** * * *
34351567 GCATAGGGAGTTCATT-CCATGTCTAAGCCCTAGTC-GGATCAAAGGTTGTGGCAGTTGTACCAG
1 GCATACGGAGTTCATTCCCA-ATCTAAG-ATTAGACTGGACCGAGGGTTGTGGCAGCAGGATCGG
* * * * * *
34351630 TAACACGTAGAGATGGACCGGGCTGATCCTCGACTTACGCATTATGCCTCTTCGATCAGCTCAGC
64 CAGCACGTAG-GGTGGACCGGGCCGATCCTCGACTTACGCATTCTGCCTCTTCGATCGGCTCAGC
* * *
34351695 ACCCGTACGTTCGTTTCGTGGGTTGACTTAT
128 ACCCGCACGCTCGTTTCATGGGTTGACTTAT
** * ** * * * *
34351726 GCATAAAGAGTTCATTCCCAATCTAAGATCAGACCCGACCGAGGGTTCTAGTAGCAGGATCGGTA
1 GCATACGGAGTTCATTCCCAATCTAAGATTAGACTGGACCGAGGGTTGTGGCAGCAGGATCGGCA
* * * * * * *
34351791 GCACGCAGGGTGGACCTGGCCAATCCTC-AGCTTACGCATTCTGCCTCTCCGGTCGGCTAAGCGC
66 GCACGTAGGGTGGACCGGGCCGATCCTCGA-CTTACGCATTCTGCCTCTTCGATCGGCTCAGCAC
* * * *
34351855 CTGCACACTCGTTTCATGGGTTGGCTTAG
130 CCGCACGCTCGTTTCATGGGTTGACTTAT
34351884 GCATACGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
34351902 ATGTCTAAGC
Statistics
Matches: 608, Mismatches: 164, Indels: 61
0.73 0.20 0.07
Matches are distributed among these distances:
150 5 0.01
151 95 0.16
152 8 0.01
153 1 0.00
154 3 0.00
155 3 0.00
156 6 0.01
157 51 0.08
158 209 0.34
159 218 0.36
160 9 0.01
ACGTcount: A:0.20, C:0.27, G:0.28, T:0.25
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAATCTAAGATTAGACTGGACCGAGGGTTGTGGCAGCAGGATCGGCA
GCACGTAGGGTGGACCGGGCCGATCCTCGACTTACGCATTCTGCCTCTTCGATCGGCTCAGCACC
CGCACGCTCGTTTCATGGGTTGACTTAT
Found at i:34351712 original size:310 final size:315
Alignment explanation
Indices: 34351324--34351938 Score: 770
Period size: 310 Copynumber: 2.0 Consensus size: 315
34351314 GGATCGGCAG
* * * *
34351324 CACGTAGGGTGGACAGGGCCGATCCTCGACTTGCACATTCTACCTCTTCGATCGGCTCAGCACCC
1 CACGTAGGATGGACAGGGCCGATCCTCGACTTACACATTATACCTCTTCGATCAGCTCAGCACCC
** * * *
34351389 GCAGACTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCAATCTAAGATTAGATCGGA
66 GCAGACTCGTTTCGTGGGTTGACTTATGCATAAAGAGTTCATTCCCAATCTAAGATCAGACCCGA
* * * * *
34351454 TCGAGGGTTGCGA-CAGCAGGATC-G-A-CA-G-GGG-GGACC-GGATCGATCC-CTGGCTTACT
131 CCGAGGGTT-CGAGCAGCAGGATCGGTAGCACGAGGGTGGACCTGG-CCAATCCTC-AGCTTACG
* * * *
34351510 CATCCTGCCTCTCCGACCGAC-AGAGTGCCTGCAC-GTCCGTTTCATGGGTTGGTTTAGGCATAG
193 CATCCTGCCTCTCCGACCGACTA-AGCGCCTGCACACT-CGTTTCATGGGTTGGCTTAGGCATAC
*
34351573 GGAGTTCATTCCATGTCTAAGCCCTAG-TCGGATCAAAGGTTGTGGCAGTTGTACCAGTAA
256 GGAGTTCATTCCATGTCTAAGCCCCAGCT-GGATCAAAGGTTGTGGCAGTTGTACCAGTAA
* * * *
34351633 CACGTAGAGATGGACCGGGCTGATCCTCGACTTACGCATTATGCCTCTTCGATCAGCTCAGCACC
1 CACGTAG-GATGGACAGGGCCGATCCTCGACTTACACATTATACCTCTTCGATCAGCTCAGCACC
* *
34351698 CGTACG-TTCGTTTCGTGGGTTGACTTATGCATAAAGAGTTCATTCCCAATCTAAGATCAGACCC
65 CGCA-GACTCGTTTCGTGGGTTGACTTATGCATAAAGAGTTCATTCCCAATCTAAGATCAGACCC
* *
34351762 GACCGAGGGTTCTAGTAGCAGGATCGGTAGCACGCAGGGTGGACCTGGCCAATCCTCAGCTTACG
129 GACCGAGGGTTCGAGCAGCAGGATCGGTAGCACG-AGGGTGGACCTGGCCAATCCTCAGCTTACG
* ** *
34351827 CATTCTGCCTCTCCGGTCGGCTAAGCGCCTGCACACTCGTTTCATGGGTTGGCTTAGGCATACGG
193 CATCCTGCCTCTCCGACCGACTAAGCGCCTGCACACTCGTTTCATGGGTTGGCTTAGGCATACGG
*
34351892 AGTTCATTCCATGTCTAAGCCCCAGCTGGATCAAGGGTTGTGGCAGT
258 AGTTCATTCCATGTCTAAGCCCCAGCTGGATCAAAGGTTGTGGCAGT
34351939 CGGAACGGTA
Statistics
Matches: 259, Mismatches: 32, Indels: 22
0.83 0.10 0.07
Matches are distributed among these distances:
309 9 0.03
310 123 0.47
311 2 0.01
312 1 0.00
313 2 0.01
314 1 0.00
316 3 0.01
317 112 0.43
318 6 0.02
ACGTcount: A:0.21, C:0.27, G:0.27, T:0.25
Consensus pattern (315 bp):
CACGTAGGATGGACAGGGCCGATCCTCGACTTACACATTATACCTCTTCGATCAGCTCAGCACCC
GCAGACTCGTTTCGTGGGTTGACTTATGCATAAAGAGTTCATTCCCAATCTAAGATCAGACCCGA
CCGAGGGTTCGAGCAGCAGGATCGGTAGCACGAGGGTGGACCTGGCCAATCCTCAGCTTACGCAT
CCTGCCTCTCCGACCGACTAAGCGCCTGCACACTCGTTTCATGGGTTGGCTTAGGCATACGGAGT
TCATTCCATGTCTAAGCCCCAGCTGGATCAAAGGTTGTGGCAGTTGTACCAGTAA
Found at i:34351901 original size:468 final size:472
Alignment explanation
Indices: 34350942--34351901 Score: 1189
Period size: 468 Copynumber: 2.0 Consensus size: 472
34350932 CCTAGTCTAA
* * *
34350942 GCATACGGAGTTCATTCCCAGTATAAGATCGGATCCGACCGAGGGTTGCGACAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAATATAAGATCAGATCCGACCGAGGGTTGCGACAGCAGGATCGA-A
* * * * * ** * *
34351007 TCACGCAGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCTGGTCGGCTGAGTGCCC
65 TCACG-AGGGGGACCGGATCGATCCCCGGCTTACGCATCCTGCCTCTCCGACCGACAGAGTGCCC
34351072 GCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTAGA
129 GCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTAGA
* * * * *
34351137 TCGAGGGTGGTAGCAGCGGCACCGACAGCACGTAGAGGGGGATCGGGCTGATCCCCGACTTGCGC
194 TCAAAGGTGGTAGCAGCGGCACCGACAGCACGTAGAGAGGGACCGGGCTGATCCCCGACTTACGC
* * *
34351202 ATTATGCCTCTTTGGCCAGCTCAGCACCCGCACGTTCATTTCATGGGTTGACTTATGCATACAGA
259 ATTATGCCTCTTCGACCAGCTCAGCACCCGCACGTTCATTTCATGGGTTGACTTATGCATAAAGA
* * ** * * * *
34351267 GTTCATTCATAGTCTAAGATTGGACTAGACCGAGGGTTTTGGCAGCAGGATCGGCAGCACGTAGG
324 GTTCATTCACAATCTAAGATCAGACCAGACCGAGGGTTCTAGCAGCAGGATCGGCAGCACGCAGG
* * * * *
34351332 GTGGACAGGGCCGATCCTCGACTTGCACATTCTACCTCTTCGATCGGCTCAGCACCCGCAGACTC
389 GTGGACAGGGCCAATCCTCGACTTACACATTCTACCTCTCCGATCGGCTAAGCACCCGCACACTC
* *
34351397 GTTTCGTGGGTTGACTTAT
454 GTTTCATGGGTTGACTTAG
* * * *
34351416 GCATACGGAGTTCATTCCCAATCTAAGATTAGATCGGATCGAGGGTTGCGACAGCAGGATCG-A-
1 GCATACGGAGTTCATTCCCAATATAAGATCAGATCCGACCGAGGGTTGCGACAGCAGGATCGAAT
* * *
34351479 CA-G-GGGGGACCGGATCGATCCCTGGCTTACTCATCCTGCCTCTCCGACCGACAGAGTGCCTGC
66 CACGAGGGGGACCGGATCGATCCCCGGCTTACGCATCCTGCCTCTCCGACCGACAGAGTGCCCGC
* * * *
34351542 ACGTCCGTTTCATGGGTTGGTTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAG-TCGGAT
131 ACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCT-AGAT
* * ** * * *
34351606 CAAAGGTTGTGGCAGTTGTACCAGTA-A-CACGTAGAGATGGACCGGGCTGATCCTCGACTTACG
195 CAAAGGTGGTAGCAGCGGCACC-G-ACAGCACGTAGAGAGGGACCGGGCTGATCCCCGACTTACG
* * * *
34351669 CATTATGCCTCTTCGATCAGCTCAGCACCCGTACGTTCGTTTCGTGGGTTGACTTATGCATAAAG
258 CATTATGCCTCTTCGACCAGCTCAGCACCCGCACGTTCATTTCATGGGTTGACTTATGCATAAAG
* * * *
34351734 AGTTCATTCCCAATCTAAGATCAGACCCGACCGAGGGTTCTAGTAGCAGGATCGGTAGCACGCAG
323 AGTTCATTCACAATCTAAGATCAGACCAGACCGAGGGTTCTAGCAGCAGGATCGGCAGCACGCAG
** * * * * *
34351799 GGTGGACCTGGCCAATCCTC-AGCTTACGCATTCTGCCTCTCCGGTCGGCTAAGCGCCTGCACAC
388 GGTGGACAGGGCCAATCCTCGA-CTTACACATTCTACCTCTCCGATCGGCTAAGCACCCGCACAC
*
34351863 TCGTTTCATGGGTTGGCTTAG
452 TCGTTTCATGGGTTGACTTAG
34351884 GCATACGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
34351902 ATGTCTAAGC
Statistics
Matches: 413, Mismatches: 69, Indels: 14
0.83 0.14 0.03
Matches are distributed among these distances:
467 2 0.00
468 349 0.85
469 2 0.00
470 2 0.00
471 2 0.00
472 1 0.00
474 55 0.13
ACGTcount: A:0.20, C:0.27, G:0.28, T:0.25
Consensus pattern (472 bp):
GCATACGGAGTTCATTCCCAATATAAGATCAGATCCGACCGAGGGTTGCGACAGCAGGATCGAAT
CACGAGGGGGACCGGATCGATCCCCGGCTTACGCATCCTGCCTCTCCGACCGACAGAGTGCCCGC
ACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTAGATC
AAAGGTGGTAGCAGCGGCACCGACAGCACGTAGAGAGGGACCGGGCTGATCCCCGACTTACGCAT
TATGCCTCTTCGACCAGCTCAGCACCCGCACGTTCATTTCATGGGTTGACTTATGCATAAAGAGT
TCATTCACAATCTAAGATCAGACCAGACCGAGGGTTCTAGCAGCAGGATCGGCAGCACGCAGGGT
GGACAGGGCCAATCCTCGACTTACACATTCTACCTCTCCGATCGGCTAAGCACCCGCACACTCGT
TTCATGGGTTGACTTAG
Found at i:34351948 original size:158 final size:157
Alignment explanation
Indices: 34351326--34351950 Score: 416
Period size: 158 Copynumber: 4.0 Consensus size: 157
34351316 ATCGGCAGCA
* * * * *
34351326 CGTAGGGTGGACAGGGCCGATCCTCGACTTGCACATTCTACCTCTTCGATCGGCTCAGCACCCGC
1 CGTAGGGTGGACCGGGCCGATCCTCGACTTACGCATTCTGCCTCTCCGATCGGCTCAGCACCCGC
* * * ** *
34351391 A-GACTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCA-ATCTAAGATTAGATCGGA
66 ACG-CTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAAGACCAGCT-GGA
* *
34351454 TCGAGGGTTGCGACAGCAGGATC-G-A-CA
128 TCGAGGGTTGTGGCAGCAGGATCGGTAGCA
** * * * * * ** ** *
34351481 -G--GGG-GGACCGGATCGATCC-CTGGCTTACTCATCCTGCCTCTCCGACCGACAGAGTGCCTG
1 CGTAGGGTGGACCGGGCCGATCCTC-GACTTACGCATTCTGCCTCTCCGATCGGCTCAGCACCCG
** * *
34351541 CACG-TCCGTTTCATGGGTTGGTTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAG-TCGG
65 CACGCT-CGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGACC-AGCT-GG
* * ** * * * *
34351604 ATCAAAGGTTGTGGCAGTTGTACCAGTAACA
127 ATCGAGGGTTGTGGCAGCAGGATCGGTAGCA
* * * * *
34351635 CGTAGAGATGGACCGGGCTGATCCTCGACTTACGCATTATGCCTCTTCGATCAGCTCAGCACCCG
1 CGTAG-GGTGGACCGGGCCGATCCTCGACTTACGCATTCTGCCTCTCCGATCGGCTCAGCACCCG
* * * * ** * * **
34351700 TACGTTCGTTTCGTGGGTTGACTTATGCATAAAGAGTTCATTCCCA-ATCTAAGATCAGACCCGA
65 CACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAAGACCAG-CTGGA
* * * *
34351764 CCGAGGGTTCTAGTAGCAGGATCGGTAGCA
128 TCGAGGGTTGTGGCAGCAGGATCGGTAGCA
* * * * * * *
34351794 CGCAGGGTGGACCTGGCCAATCCTC-AGCTTACGCATTCTGCCTCTCCGGTCGGCTAAGCGCCTG
1 CGTAGGGTGGACCGGGCCGATCCTCGA-CTTACGCATTCTGCCTCTCCGATCGGCTCAGCACCCG
* * *
34351858 CACACTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCTGGAT
65 CACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAG-ACCAGCTGGAT
* *
34351923 CAAGGGTTGTGGCAGTC-GGAACGGTAGC
129 CGAGGGTTGTGGCAG-CAGGATCGGTAGC
34351951 GGGATCGATA
Statistics
Matches: 343, Mismatches: 105, Indels: 41
0.70 0.21 0.08
Matches are distributed among these distances:
150 5 0.01
151 97 0.28
152 7 0.02
153 1 0.00
154 3 0.01
155 1 0.00
157 5 0.01
158 113 0.33
159 106 0.31
160 5 0.01
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.25
Consensus pattern (157 bp):
CGTAGGGTGGACCGGGCCGATCCTCGACTTACGCATTCTGCCTCTCCGATCGGCTCAGCACCCGC
ACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGACCAGCTGGATCG
AGGGTTGTGGCAGCAGGATCGGTAGCA
Found at i:34352146 original size:26 final size:26
Alignment explanation
Indices: 34352075--34352134 Score: 120
Period size: 26 Copynumber: 2.3 Consensus size: 26
34352065 TAGGCATACA
34352075 GAGTTCATCCTCGGTCTAAGCTTATG
1 GAGTTCATCCTCGGTCTAAGCTTATG
34352101 GAGTTCATCCTCGGTCTAAGCTTATG
1 GAGTTCATCCTCGGTCTAAGCTTATG
34352127 GAGTTCAT
1 GAGTTCAT
34352135 TCCCAGTCTA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 34 1.00
ACGTcount: A:0.20, C:0.22, G:0.23, T:0.35
Consensus pattern (26 bp):
GAGTTCATCCTCGGTCTAAGCTTATG
Found at i:34352801 original size:26 final size:26
Alignment explanation
Indices: 34352772--34352824 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
34352762 GTTGACTTAG
* *
34352772 GCATACGGAGTTCATCCCCCGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
34352798 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
34352824 G
1 G
34352825 ATTGGATTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:34353303 original size:26 final size:25
Alignment explanation
Indices: 34353267--34353315 Score: 89
Period size: 26 Copynumber: 1.9 Consensus size: 25
34353257 GGCTTAGGCA
34353267 TACGGAGTTCATTCCATGTCTAAGCT
1 TACGGAGTTCATTCCA-GTCTAAGCT
34353293 TACGGAGTTCATTCCAGTCTAAG
1 TACGGAGTTCATTCCAGTCTAAG
34353316 ATCAGACCGA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.24, C:0.22, G:0.20, T:0.33
Consensus pattern (25 bp):
TACGGAGTTCATTCCAGTCTAAGCT
Found at i:34353669 original size:26 final size:26
Alignment explanation
Indices: 34353627--34353682 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
34353617 TGGGTTGACT
34353627 TAAGCATACGACATTCATCCCCAGTC
1 TAAGCATACGACATTCATCCCCAGTC
* * *
34353653 TAAGCATATGA-AGTTCATTCCCATTC
1 TAAGCATACGACA-TTCATCCCCAGTC
34353679 TAAG
1 TAAG
34353683 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.32, C:0.27, G:0.12, T:0.29
Consensus pattern (26 bp):
TAAGCATACGACATTCATCCCCAGTC
Found at i:34354181 original size:26 final size:26
Alignment explanation
Indices: 34354132--34354184 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
34354122 GTTGTCTTAG
* *
34354132 GCATACGGAGTTCATTGCATGTCTAA
1 GCATACGAAGTTCATTCCATGTCTAA
34354158 GCATACGAAGTTCATTCCCA-GTCTAA
1 GCATACGAAGTTCATT-CCATGTCTAA
34354184 G
1 G
34354185 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATGTCTAA
Found at i:34354893 original size:26 final size:26
Alignment explanation
Indices: 34354853--34354906 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
34354843 TTTCTTAACT
*
34354853 TAGGCATACGGAGTTCATCCCCAGTC
1 TAGGCATACGAAGTTCATCCCCAGTC
* *
34354879 TAGGCCTACGAAGTTCATTCCCAGTC
1 TAGGCATACGAAGTTCATCCCCAGTC
34354905 TA
1 TA
34354907 AGATCAGACT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (26 bp):
TAGGCATACGAAGTTCATCCCCAGTC
Found at i:34356622 original size:26 final size:26
Alignment explanation
Indices: 34356592--34356644 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
34356582 GTTGACTTAG
*
34356592 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
34356618 GCATACAGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
34356644 G
1 G
34356645 ATCAAACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:34356926 original size:159 final size:159
Alignment explanation
Indices: 34356703--34356989 Score: 423
Period size: 159 Copynumber: 1.8 Consensus size: 159
34356693 GGGATCGGAT
* * * * *
34356703 CGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGACGGATCACCCGTACGCCCGTTTCATGGGT
1 CGATCCCCGACTTGCGCATTATGCCTCTCCGATCGACGCAGCACCCGTACGCCCGTTTCATGGGT
* *
34356768 TGGCTTAGGCATA-GAGAGTTCATTCCATGTCTAAGCCCTAGCCAGATGGAGGGTTGTGGTAGCG
66 TGGCTTAGGCATACG-GAGTTCATTCCATGTCTAAGCCCCAGCCAGATCGAGGGTTGTGGTAGCG
34356832 GGATCGACAGCACGTAGAAGGGCACCAGGC
130 GGATCGACAGCACGTAGAAGGGCACCAGGC
* * * * * * *
34356862 CGATCCCCGATTTGCGCATTATGCCTCTCCGATCGGCTCAGCGCCCGTATGCTCGTTTCGTGGGT
1 CGATCCCCGACTTGCGCATTATGCCTCTCCGATCGACGCAGCACCCGTACGCCCGTTTCATGGGT
*
34356927 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAGGGTTGTGGTAGC
66 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGATCGAGGGTTGTGGTAGC
34356990 AAGATTAGTA
Statistics
Matches: 112, Mismatches: 15, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
159 111 0.99
160 1 0.01
ACGTcount: A:0.17, C:0.29, G:0.30, T:0.24
Consensus pattern (159 bp):
CGATCCCCGACTTGCGCATTATGCCTCTCCGATCGACGCAGCACCCGTACGCCCGTTTCATGGGT
TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGATCGAGGGTTGTGGTAGCGG
GATCGACAGCACGTAGAAGGGCACCAGGC
Found at i:34357148 original size:26 final size:26
Alignment explanation
Indices: 34357119--34357168 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
34357109 GTTGACTTAG
34357119 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
34357145 GCATATGGAGTTCATTCCCAGTCT
1 GCATACGGAGTTCATCCCCAGTCT
34357169 GAGATTGGAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:34358116 original size:159 final size:158
Alignment explanation
Indices: 34357960--34358397 Score: 429
Period size: 158 Copynumber: 2.8 Consensus size: 158
34357950 GGCAGCACTT
* *
34357960 ATAGGGGGACCAGGCCGATCCCTGGCTTGCGCATTATGCCTCTCTGATCGACTCAGGGCCCGCAC
1 ATAGGGGGACCAGGCCGATCCCTGGCTTGCGCATTATGCCTCTCTGATCGGCTCAGCGCCCGCAC
* * * ****
34358025 ACTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATTGGACCAGA-C
66 GCTCATTTCGTTGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAG-CCAGATC
* *
34358087 TAAGGGTTGCAATAGCAGGATCGATAGCACGC
129 -AAGGGTTGCAATAGCAGGACCGACAGCAC-C
* * * * * * *
34358119 -T-GGAGGGACCAGGTCGATCCCCGACTTGCTCATTCTGCCTCT-TCGACCGGCTGAGCGCCCGC
1 ATAGG-GGGACCAGGCCGATCCCTGGCTTGCGCATTATGCCTCTCT-GATCGGCTCAGCGCCCGC
* * * * * * *
34358181 ATGCCCGTTTCATTGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGATC
64 ACGCTCATTTCGTTGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGATC
* *** *
34358246 GAGGGTTGTGGTAGCGGGACCGACAGCACGC
129 AAGGGTTGCAATAGCAGGACCGACAGCAC-C
* * * * * * * *
34358277 AGAGGGGGACCGGGCTGATCCCTGGCTTGCGCATTATGCCTTTCCGGTCGGCTCAGCACCCGTAC
1 ATAGGGGGACCAGGCCGATCCCTGGCTTGCGCATTATGCCTCTCTGATCGGCTCAGCGCCCGCAC
34358342 GCTCATTTCGTTGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAG
66 GCTCATTTCGTTGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAG
34358398 TCGGACCGAG
Statistics
Matches: 221, Mismatches: 50, Indels: 16
0.77 0.17 0.06
Matches are distributed among these distances:
157 6 0.03
158 115 0.52
159 98 0.44
160 2 0.01
ACGTcount: A:0.18, C:0.28, G:0.29, T:0.24
Consensus pattern (158 bp):
ATAGGGGGACCAGGCCGATCCCTGGCTTGCGCATTATGCCTCTCTGATCGGCTCAGCGCCCGCAC
GCTCATTTCGTTGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGATCAA
GGGTTGCAATAGCAGGACCGACAGCACC
Found at i:34358306 original size:317 final size:310
Alignment explanation
Indices: 34357820--34358391 Score: 770
Period size: 317 Copynumber: 1.8 Consensus size: 310
34357810 AGGGGGGACG
* * **
34357820 GGTCGATCCCCGGTTGTGCATTCTGCCTCTCCGATCAGCTGAACGCCCACATGCTTGTTTCATGG
1 GGTCGATCCCCGCTTGTGCATTCTGCCTCTCCGACCAGCTGAACGCCCACATGCCCGTTTCATGG
* * *
34357885 GTTGGCTTAGGCAGTTCATTCCATGTCTAAGCCTCGGTCGGACCGAGGGTTGTGGCAGCGAGACT
66 GTTGGCTTAGGCAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCGAGACC
* ** * *
34357950 GGCAGCACTTATAGGGGGACCAGGCCGATCCCTGGCTTGCGCATTATGCCTCTCTGATCGACTCA
131 GACAGCACGCAGAGGGGGACCAGGCCGATCCCTGGCTTGCGCATTATGCCTCTCCGATCGACTCA
**
34358015 GGGCCCGCACACTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATTG
196 GCACCCGCACACTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAAGATTG
34358079 GACCAGACTAAGGGTTGCAATAGCAGGATCGATAGCACGCTGGAGGGACCA
260 GACCAGACTAAGGGTTGCAATAGCAGGATCGATAGCACGCTGGAGGGACCA
* * * *
34358130 GGTCGATCCCCGACTTGCT-CATTCTGCCTCTTCGACCGGCTGAGCGCCCGCATGCCCGTTTCAT
1 GGTCGATCCCCG-CTTG-TGCATTCTGCCTCTCCGACCAGCTGAACGCCCACATGCCCGTTTCAT
* * *
34358194 TGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGATCGAGGGTTGTGGTA
64 GGGTTGGCTTAGGC------AGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCA
* * * * *
34358259 GCGGGACCGACAGCACGCAGAGGGGGACCGGGCTGATCCCTGGCTTGCGCATTATGCCTTTCCGG
123 GCGAGACCGACAGCACGCAGAGGGGGACCAGGCCGATCCCTGGCTTGCGCATTATGCCTCTCCGA
* * * * *
34358324 TCGGCTCAGCACCCGTACGCTCATTTCGTTGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
188 TCGACTCAGCACCCGCACACTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCT
34358389 AAG
253 AAG
34358392 CCCCAGTCGG
Statistics
Matches: 222, Mismatches: 31, Indels: 11
0.84 0.12 0.04
Matches are distributed among these distances:
310 12 0.05
311 54 0.24
312 1 0.00
316 3 0.01
317 152 0.68
ACGTcount: A:0.18, C:0.28, G:0.29, T:0.25
Consensus pattern (310 bp):
GGTCGATCCCCGCTTGTGCATTCTGCCTCTCCGACCAGCTGAACGCCCACATGCCCGTTTCATGG
GTTGGCTTAGGCAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCGAGACC
GACAGCACGCAGAGGGGGACCAGGCCGATCCCTGGCTTGCGCATTATGCCTCTCCGATCGACTCA
GCACCCGCACACTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGATTGG
ACCAGACTAAGGGTTGCAATAGCAGGATCGATAGCACGCTGGAGGGACCA
Found at i:34358412 original size:159 final size:159
Alignment explanation
Indices: 34357897--34358430 Score: 529
Period size: 159 Copynumber: 3.4 Consensus size: 159
34357887 TGGCTTAGGC
* * * * * ** *
34357897 AGTTCATTCCATGTCTAAGCCTCGGTCGGACCGAGGGTTGTGGCAGCGAGACTGGCAGCACTTAT
1 AGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCAAGACCGACAGCACGCAG
* * * * * *
34357962 AGGGGGACCAGGCCGATCCCTGGCTTGCGCATTATGCCTCTCTGATCGACTCAGGGCCCGCACAC
66 AGGGGGACCAGGCTGATCCCTGGCTTGCGCATTATGCCTTTCCGATCGGCTCAGCGCCCGCACGC
* *
34358027 TCATTTCGTGGGTTGACTTAGGCATACGG
131 TCATTTCGTTGGTTGGCTTAGGCATACGG
**** * * ** **** * * *
34358056 AGTTCATTCCCA-GTCTAAG-ATTGGACCAGACTAAGGGTTGCAATAGCAGGATCGATAGCACGC
1 AGTTCATT-CCATGTCTAAGCCCCAG-TCGGACCGAGGGTTGTGGCAGCAAGACCGACAGCACGC
* * * * * * * *
34358119 TG-GAGGGACCAGG-TCGATCCCCGACTTGCTCATTCTGCCTCTT-CGACCGGCTGAGCGCCCGC
64 AGAGGGGGACCAGGCT-GATCCCTGGCTTGCGCATTATGCCT-TTCCGATCGGCTCAGCGCCCGC
* * * * *
34358181 ATGCCCGTTTCATTGGTTGGCTTAGGCATAGGG
127 ACGCTCATTTCGTTGGTTGGCTTAGGCATACGG
* * **
34358214 AGTTCATTCCATGTCTAAGCCCCAGTCGGATCGAGGGTTGTGGTAGCGGGACCGACAGCACGCAG
1 AGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCAAGACCGACAGCACGCAG
* * * *
34358279 AGGGGGACCGGGCTGATCCCTGGCTTGCGCATTATGCCTTTCCGGTCGGCTCAGCACCCGTACGC
66 AGGGGGACCAGGCTGATCCCTGGCTTGCGCATTATGCCTTTCCGATCGGCTCAGCGCCCGCACGC
34358344 TCATTTCGTTGGTTGGCTTAGGCATACGG
131 TCATTTCGTTGGTTGGCTTAGGCATACGG
34358373 AGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCAAGACCGACAG
1 AGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCAAGACCGACAG
34358431 TGGGATCGGC
Statistics
Matches: 290, Mismatches: 76, Indels: 18
0.76 0.20 0.05
Matches are distributed among these distances:
157 3 0.01
158 118 0.41
159 165 0.57
160 4 0.01
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (159 bp):
AGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCAAGACCGACAGCACGCAG
AGGGGGACCAGGCTGATCCCTGGCTTGCGCATTATGCCTTTCCGATCGGCTCAGCGCCCGCACGC
TCATTTCGTTGGTTGGCTTAGGCATACGG
Found at i:34358579 original size:26 final size:26
Alignment explanation
Indices: 34358549--34358600 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
34358539 GTTGACTTAG
34358549 GCATATAGAGTTCA-TCCCTAGTCTAA
1 GCATATAGAGTTCATTCCC-AGTCTAA
*
34358575 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATAGAGTTCATTCCCAGTCTAA
34358601 AATCAGACTG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (26 bp):
GCATATAGAGTTCATTCCCAGTCTAA
Found at i:34359082 original size:26 final size:26
Alignment explanation
Indices: 34359033--34359082 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
34359023 GGCTTAGGCA
*
34359033 TACGGAGTTCATTCCATGTCTAAGCG
1 TACGGAGTTCATTCCATGTATAAGCG
34359059 TACGGAGTTCATTCCCA-GTATAAG
1 TACGGAGTTCATT-CCATGTATAAG
34359083 AGTTTGAGTC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCATGTATAAGCG
Found at i:34359762 original size:26 final size:26
Alignment explanation
Indices: 34359733--34359785 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34359723 GTTGACTTAG
34359733 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
34359759 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
34359785 G
1 G
34359786 ATCAGATCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:34360245 original size:26 final size:26
Alignment explanation
Indices: 34360209--34360261 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
34360199 GTTGGTTTAG
34360209 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
* *
34360235 GCATATGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
34360261 G
1 G
34360262 ATCAGACAAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:34361091 original size:158 final size:160
Alignment explanation
Indices: 34360890--34361274 Score: 402
Period size: 158 Copynumber: 2.4 Consensus size: 160
34360880 CCTCTCTAGC
* * * * * *
34360890 CGACTGAACGCCCACATGCCCGCTTTATGGGTTGGCTTAGGCATAGGGAGTTCAATCCATATCTA
1 CGACTCAACGCCCGCATGCTCGTTTTATGGGTTGGCTTAGGCATACGGAGTTCATTCCATATCTA
* ** * ** * * *
34360955 AGCCTC-AGTCGGACTGAGGGTTGTGGTAGCAGGATCGACAGCACGTAGG-GGGGACCGGGCCGA
66 AGCATCAAACCAGACCAAGGGTTGTGATAGCAGGATCGACAGCACGCAGGAGGGGACCGAGCCGA
34361018 TCCCCGACTTGCACATTAGGCCTCTCC-AGT
131 TCCCCGACTTGCACATTAGGCCTCTCCGA-T
* * * * * *
34361048 TGGCTCAACGCCCGCATGCTCGTTTTGTGAGTTGACTTAGGCATACAGAGTTCATTCTCA-ATCT
1 CGACTCAACGCCCGCATGCTCGTTTTATGGGTTGGCTTAGGCATACGGAGTTCATTC-CATATCT
* *
34361112 AAG-ATCAAACCAGACCAAGGGTTGTGATAGCAGGATCGACAGCATGCAGGAGGGGATCGAGCCG
65 AAGCATCAAACCAGACCAAGGGTTGTGATAGCAGGATCGACAGCACGCAGGAGGGGACCGAGCCG
* * * **
34361176 ATCCCTGGCTTGCGCATTCTGCCTCTCCGAT
130 ATCCCCGACTTGCACATTAGGCCTCTCCGAT
* * * * * * *
34361207 CGACTGAGCACCTGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
1 CGACTCAACGCCCGCATGCTCGTTTTATGGGTTGGCTTAGGCATACGGAGTTCATTCCATATCTA
34361272 AGC
66 AGC
34361275 GTATGGAATT
Statistics
Matches: 180, Mismatches: 41, Indels: 10
0.78 0.18 0.04
Matches are distributed among these distances:
157 2 0.01
158 89 0.49
159 88 0.49
160 1 0.01
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.24
Consensus pattern (160 bp):
CGACTCAACGCCCGCATGCTCGTTTTATGGGTTGGCTTAGGCATACGGAGTTCATTCCATATCTA
AGCATCAAACCAGACCAAGGGTTGTGATAGCAGGATCGACAGCACGCAGGAGGGGACCGAGCCGA
TCCCCGACTTGCACATTAGGCCTCTCCGAT
Found at i:34361102 original size:341 final size:342
Alignment explanation
Indices: 34360375--34361104 Score: 742
Period size: 342 Copynumber: 2.1 Consensus size: 342
34360365 CAGCTGAGCA
* * * * *
34360375 CCCGCACACTCGTTTCGTGGGTTGTCTTAGGCATGCAGAGTTCATT-CCATGTCTAAGAATACGG
1 CCCGCACGCTCGTTTTGT-GGTTGACTTAGGCATACAGAGTTCATTCCCATGCCTAAGAATACGG
* * *
34360439 AGTTCATTCCCAGTCTAAGATTAGACTGGACCGAGGGTTGCGACAGCAGGATCGATAGCATGCAG
65 AGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTACGACAGCAGGATCGATAGCACGCAG
* * * * * **
34360504 GGGGGATCGGGCCGATCCTCGACTTGTGCATTCTGCCTCTCCAGTCGGCTGAGCGCCCACACGTT
130 GGGGGATCAGGCCGATCCTCGACTTGTGCATTCTACCTCTCCAGCCGACTGAACGCCCACACGCC
* * * * * * *
34360569 CATTTCGTGGGTGGCTTAGGCATATGTAGTTTATTTCATGTCTAAGCCCCAGTCAGACCAAGGGT
195 CATTTCATGGGTGGCTTAGGCATAGGGAGTTCAATCCATATCTAAGCCCCAGTCAGACCAAGGGT
** * * * * * *
34360634 GGTGGCAGTGGGACCAGCAGCGCATAGAAGGGGATCAGGTCGATCCCCGTCTTACGCATTATGCC
260 GGTGGCAGCAGGACCAGCAGCACATAGAAGGGGACCAGGCCGATCCCCGACTTACACATTAGGCC
34360699 TCTCCGACCGGCTCAACG
325 TCTCCGACCGGCTCAACG
* * ** * * *
34360717 CCCGTACGCTCATTTCAT-TGGTTGACTTAGGTGTA-GGAAGTTCATTCCCA-GCCTAAGCATAT
1 CCCGCACGCTCGTTT--TGTGGTTGACTTAGGCATACAG-AGTTCATTCCCATGCCTAAGAATAC
* * * ** * *
34360779 GGAGTTCATTTCCAGTCTACGATCAGATTGGACCGAGGGTTACGGTAGTAGGATCGATAGCACGT
63 GGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTACGACAGCAGGATCGATAGCACGC
* * *
34360844 A-GGGGGATCAGGTCGATCC-CTGACTTGTGCATTCTACCTCTCTAGCCGACTGAACGCCCACAT
128 AGGGGGGATCAGGCCGATCCTC-GACTTGTGCATTCTACCTCTCCAGCCGACTGAACGCCCACAC
* * * **
34360907 GCCCGCTTT-ATGGGTTGGCTTAGGCATAGGGAGTTCAATCCATATCTAAGCCTCAGTCGGACTG
192 GCCC-ATTTCATGGG-TGGCTTAGGCATAGGGAGTTCAATCCATATCTAAGCCCCAGTCAGACCA
* * * * * * *
34360971 AGGGTTGTGGTAGCAGGATC-GACAGCACGTAG-GGGGGACCGGGCCGATCCCCGACTTGCACAT
255 AGGGTGGTGGCAGCAGGACCAG-CAGCACATAGAAGGGGACCAGGCCGATCCCCGACTTACACAT
**
34361034 TAGGCCTCTCC-AGTTGGCTCAACG
319 TAGGCCTCTCCGA-CCGGCTCAACG
*
34361058 CCCGCATGCTCGTTTTGTGAGTTGACTTAGGCATACAGAGTTCATTC
1 CCCGCACGCTCGTTTTGTG-GTTGACTTAGGCATACAGAGTTCATTC
34361105 TCAATCTAAG
Statistics
Matches: 309, Mismatches: 67, Indels: 25
0.77 0.17 0.06
Matches are distributed among these distances:
339 1 0.00
340 4 0.01
341 137 0.44
342 163 0.53
343 4 0.01
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.25
Consensus pattern (342 bp):
CCCGCACGCTCGTTTTGTGGTTGACTTAGGCATACAGAGTTCATTCCCATGCCTAAGAATACGGA
GTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTACGACAGCAGGATCGATAGCACGCAGG
GGGGATCAGGCCGATCCTCGACTTGTGCATTCTACCTCTCCAGCCGACTGAACGCCCACACGCCC
ATTTCATGGGTGGCTTAGGCATAGGGAGTTCAATCCATATCTAAGCCCCAGTCAGACCAAGGGTG
GTGGCAGCAGGACCAGCAGCACATAGAAGGGGACCAGGCCGATCCCCGACTTACACATTAGGCCT
CTCCGACCGGCTCAACG
Found at i:34361272 original size:159 final size:158
Alignment explanation
Indices: 34360916--34361274 Score: 382
Period size: 159 Copynumber: 2.3 Consensus size: 158
34360906 TGCCCGCTTT
* * * ** * ** *
34360916 ATGGGTTGGCTTAGGCATAGGGAGTTCAATCCATATCTAAGCCTCAGTCGGACTGAGGGTTGTGG
1 ATGGGTTGGCTTAGGCATACGGAGTTCATTCCATATCTAAGCATCAACCAGACCAAGGGTTGTGA
* *
34360981 TAGCAGGATCGACAGCACGTAGGGGGGACCGGGCCGATCCCCGACTTGCACATTAGGCCTCTCCA
66 TAGCAGGATCGACAGCACGCAGGGGGGACCGAGCCGATCCCCGACTTGCACATTAGGCCTCTCCA
* * * * *
34361046 GTTGGCTCAACGCCCGCATGCTCGTTTT
131 GTCGACTCAACACCCGCACGCTCGTTTC
* * * *
34361074 GTGAGTTGACTTAGGCATACAGAGTTCATTCTCA-ATCTAAG-ATCAAACCAGACCAAGGGTTGT
1 ATGGGTTGGCTTAGGCATACGGAGTTCATTC-CATATCTAAGCATC-AACCAGACCAAGGGTTGT
* * * * * **
34361137 GATAGCAGGATCGACAGCATGCAGGAGGGGATCGAGCCGATCCCTGGCTTGCGCATTCTGCCTCT
64 GATAGCAGGATCGACAGCACGCAGG-GGGGACCGAGCCGATCCCCGACTTGCACATTAGGCCTCT
* * *
34361202 CC-GATCGACTGAGCACCTGCACGCTCGTTTC
128 CCAG-TCGACTCAACACCCGCACGCTCGTTTC
*
34361233 ATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
1 ATGGGTTGGCTTAGGCATACGGAGTTCATTCCATATCTAAGC
34361275 GTATGGAATT
Statistics
Matches: 160, Mismatches: 35, Indels: 10
0.78 0.17 0.05
Matches are distributed among these distances:
157 2 0.01
158 70 0.44
159 88 0.55
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (158 bp):
ATGGGTTGGCTTAGGCATACGGAGTTCATTCCATATCTAAGCATCAACCAGACCAAGGGTTGTGA
TAGCAGGATCGACAGCACGCAGGGGGGACCGAGCCGATCCCCGACTTGCACATTAGGCCTCTCCA
GTCGACTCAACACCCGCACGCTCGTTTC
Found at i:34362105 original size:158 final size:158
Alignment explanation
Indices: 34361701--34362129 Score: 402
Period size: 159 Copynumber: 2.7 Consensus size: 158
34361691 TAGTATGCAG
* * * * * * * * *
34361701 GGGGGATCGGGCCAATCCCTGACTTGCGCATTCTGCCTCTCTGACTGGCTGAGCACCCACACGC-
1 GGGGGATCGAGTCGATCCCCGACTTGCGCATTCTGCCTCTCTGGCCGACTGAGCGCCCGCACGCT
* * *
34361765 CAATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGG
66 C-ATTTCGTGGGTTGGCTTAGGCATA-CGAGTTCATTCCATGTCTAAGACCCAACCAGACCGAGG
* *
34361830 GTTGTGGCAGTGGGATCGATAGTACATAGA
129 GTTGTGGCAGTAGGATCGACAGTACATAGA
* * * * * * *
34361860 GGGGGATCGAGTCGATCCTCGACTTACGCATTATGCCTCTCCGGTC-AGCTCAGCGCCCGCATGC
1 GGGGGATCGAGTCGATCCCCGACTTGCGCATTCTGCCTCTCTGGCCGA-CTGAGCGCCCGCACGC
* * ** * * ** * *
34361924 TCGTTTCATGGGTTTACTTAGGCATATGCAGTTCATTCCCA-GTCTAAGATCGGATCAGACTGAG
65 TCATTTCGTGGGTTGGCTTAGGCATACG-AGTTCATT-CCATGTCTAAGACCCAACCAGACCGAG
**
34361988 GGTTGTGGCAGTAGGATCGACAGCT-TGTAG-
128 GGTTGTGGCAGTAGGATCGACAG-TACATAGA
* * *
34362018 GGGGGA-CAGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCTGGCCGACTGAGTGCCCGCACAC
1 GGGGGATC-GAGTCGATCCCCGACTTGCGCATTCTGCCTCTCTGGCCGACTGAGCGCCCGCACGC
* *
34362082 TCATTTCGTAGGCTGGCTTAGGCATACGAGGTTCATTCCATGTCTAAG
65 TCATTTCGTGGGTTGGCTTAGGCATACGA-GTTCATTCCATGTCTAAG
34362130 CATACGGAGT
Statistics
Matches: 212, Mismatches: 49, Indels: 19
0.76 0.17 0.07
Matches are distributed among these distances:
157 5 0.02
158 86 0.41
159 116 0.55
160 5 0.02
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.25
Consensus pattern (158 bp):
GGGGGATCGAGTCGATCCCCGACTTGCGCATTCTGCCTCTCTGGCCGACTGAGCGCCCGCACGCT
CATTTCGTGGGTTGGCTTAGGCATACGAGTTCATTCCATGTCTAAGACCCAACCAGACCGAGGGT
TGTGGCAGTAGGATCGACAGTACATAGA
Found at i:34362141 original size:26 final size:26
Alignment explanation
Indices: 34362103--34362155 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
34362093 GCTGGCTTAG
34362103 GCATACGAGGTTCATT-CCATGTCTAA
1 GCATACGAGGTTCATTCCCA-GTCTAA
34362129 GCATACG-GAGTTCATTCCCAGTCTAA
1 GCATACGAG-GTTCATTCCCAGTCTAA
34362155 G
1 G
34362156 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 1 0.04
26 21 0.84
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGAGGTTCATTCCCAGTCTAA
Found at i:34362347 original size:195 final size:196
Alignment explanation
Indices: 34362016--34362370 Score: 482
Period size: 195 Copynumber: 1.8 Consensus size: 196
34362006 GACAGCTTGT
* * * *
34362016 AGGGGGGACAGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCTGGCCGACTGAGTGCCCGCACA
1 AGGGGGGACAGGGTCGATCCCCAACTTACGCATTCTGCCTCACTGGCCGACTGAGCGCCCGCACA
*
34362081 CTCATTTCGTAGGCTGGCTTAGGCATACGAGGTTCATTCCATGTCTAAGCATACGGAGTTCATTC
66 CTCATTTCGTAGGCTGGCTTAGGCATACGAGGTTCATTCCATGTCTAAGCATACGAAGTTCATTC
** *
34362146 CCAGTCTAAGATTGGACCGGATCGAAGGTTACGGTAGTAGGACCAGTAGCAGGATCGATAGCACG
131 CCAGTCTAAGATCAGACCGGACCGAAGGTTACGGTAGTAGGACCAGTAGCAGGATCGATAGCACG
34362211 C
196 C
* * * * * *
34362212 AGGGGGGACCGGGTCGATCCCTAACTTATGCATTCTGCCTCACTGGTCGGCTGAGCGCCCGCACG
1 AGGGGGGACAGGGTCGATCCCCAACTTACGCATTCTGCCTCACTGGCCGACTGAGCGCCCGCACA
* * ** *
34362277 CTC-TTT-TTATGGGTTTCTTAGGCATAC-AGAGTTCATTCCATGTCTAAGCATATGAAGTTCAT
66 CTCATTTCGTA-GGCTGGCTTAGGCATACGAG-GTTCATTCCATGTCTAAGCATACGAAGTTCAT
* *
34362339 TTCCAGTCTAAGATCAGACCGGACCGAGGGTT
129 TCCCAGTCTAAGATCAGACCGGACCGAAGGTT
34362371 GTGGCAGCAG
Statistics
Matches: 136, Mismatches: 21, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
194 4 0.03
195 74 0.54
196 58 0.43
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.25
Consensus pattern (196 bp):
AGGGGGGACAGGGTCGATCCCCAACTTACGCATTCTGCCTCACTGGCCGACTGAGCGCCCGCACA
CTCATTTCGTAGGCTGGCTTAGGCATACGAGGTTCATTCCATGTCTAAGCATACGAAGTTCATTC
CCAGTCTAAGATCAGACCGGACCGAAGGTTACGGTAGTAGGACCAGTAGCAGGATCGATAGCACG
C
Found at i:34362680 original size:25 final size:26
Alignment explanation
Indices: 34362645--34362696 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
34362635 GTTGACTTCG
*
34362645 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGCCTAA
*
34362671 GCATA-GGAGTTCATTCCCAGCCTAA
1 GCATATGGAGTTCATCCCCAGCCTAA
34362696 G
1 G
34362697 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 19 0.79
26 5 0.21
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATATGGAGTTCATCCCCAGCCTAA
Found at i:34362971 original size:159 final size:159
Alignment explanation
Indices: 34362776--34363173 Score: 417
Period size: 159 Copynumber: 2.5 Consensus size: 159
34362766 TTGCGTATTC
* * * *
34362776 TGCCTCTTCGGCCGGCTGAGCACCCGCACACCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTC
1 TGCCTCTTCGGCTGGCTGAGCACCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
* * * *
34362841 ATTCCATGTCTAAGCCCCAG-CCAGACCGAGGGTTGTGGTAGTGGGACCGACAACACGCAGAGGG
66 ATTCCATGTCTAAGCACCAGACCAGACCGAGGGTTATGGTAATAGGACCGACAACACGCA-AGGG
*
34362905 GGACCGGGCCGATCCCCGACTTACGCACCA
130 GGACCGGGCCAATCCCCGACTTACGCACCA
* * * * * *
34362935 TGCCTCTTTGGCTGGCTCAGCACCCGCACGCTCGTTTCGTGGGTTGACTTATGAATACGGACTTC
1 TGCCTCTTCGGCTGGCTGAGCACCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
* * * * * ** * *
34363000 ATTCCCA-GTGTAAG-ATCAGACCGGATCGAGGGTTATGGTAATAGGATCGACAGTATGTAAGGG
66 ATT-CCATGTCTAAGCACCAGACCAGACCGAGGGTTATGGTAATAGGACCGACAACACGCAAGGG
* * ***
34363063 GGACCGGGTCAATCCCTGACTTACGCATTT
130 GGACCGGGCCAATCCCCGACTTACGCACCA
* * * * * * *
34363093 TGCCTC-TCCGATCGGTTGAGCACCAGTACACTCGTTTCATGGGTCGACTTAGGCATACGGAGTT
1 TGCCTCTTCGGCT-GGCTGAGCACCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
34363157 CATTCCATGTCTAAGCA
65 CATTCCATGTCTAAGCA
34363174 TACAGACTTC
Statistics
Matches: 191, Mismatches: 43, Indels: 10
0.78 0.18 0.04
Matches are distributed among these distances:
157 6 0.03
158 88 0.46
159 94 0.49
160 3 0.02
ACGTcount: A:0.20, C:0.27, G:0.28, T:0.24
Consensus pattern (159 bp):
TGCCTCTTCGGCTGGCTGAGCACCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
ATTCCATGTCTAAGCACCAGACCAGACCGAGGGTTATGGTAATAGGACCGACAACACGCAAGGGG
GACCGGGCCAATCCCCGACTTACGCACCA
Found at i:34363127 original size:158 final size:157
Alignment explanation
Indices: 34362671--34363180 Score: 488
Period size: 158 Copynumber: 3.2 Consensus size: 157
34362661 CCCAGTCTAA
* * * **
34362671 GCATA-GGAGTTCATTCCCAGCCTAAGATCAGACTGGACCGAGGGTTGCGACAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGTAGTAGGATCGACA
* * * * * *
34362735 GTACATAGGGGGGATCGGGTCGATCCCTGACTTGCGTATTCTGCCTCTTCGGCCGGCTGAGCACC
66 GTACGTAAGGGGGACCGGGTCGATCCCTGACTTACGCATTATGCCTCTTC-GCCGGCTGAGCACC
* *
34362800 CGCACACCCGTTTCGTGGGTTGGCTTAG
130 CGCACACTCGTTTCGTGGGTTGACTTAG
* ** * * *
34362828 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCAGACCGAGGGTTGTGGTAGTGGGACCGA
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTGTGGTAGTAGGATCGA
** * * * ** * * *
34362891 CAACACGCAGAGGGGGACCGGGCCGATCCCCGACTTACGCACCATGCCTCTTTGGCTGGCTCAGC
64 CAGTACGTA-AGGGGGACCGGGTCGATCCCTGACTTACGCATTATGCCTC-TTCGCCGGCTGAGC
* *
34362956 ACCCGCACGCTCGTTTCGTGGGTTGACTTAT
127 ACCCGCACACTCGTTTCGTGGGTTGACTTAG
* * * * * *
34362987 GAATACGGACTTCATTCCCAGTGTAAGATCAGACCGGATCGAGGGTTATGGTAATAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGTAGTAGGATCGACA
* * * * * *
34363052 GTATGTAAGGGGGACCGGGTCAATCCCTGACTTACGCATTTTGCCTCTCCGATCGGTTGAGCACC
66 GTACGTAAGGGGGACCGGGTCGATCCCTGACTTACGCATTATGCCTCTTCG-CCGGCTGAGCACC
* * * *
34363117 AGTACACTCGTTTCATGGGTCGACTTAG
130 CGCACACTCGTTTCGTGGGTTGACTTAG
34363145 GCATACGGAGTTCATT-CCATGTCTAAGCATACAGAC
1 GCATACGGAGTTCATTCCCA-GTCTAAG-AT-CAGAC
34363181 TTCATTTCTA
Statistics
Matches: 275, Mismatches: 67, Indels: 19
0.76 0.19 0.05
Matches are distributed among these distances:
157 13 0.05
158 132 0.48
159 120 0.44
160 10 0.04
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGTAGTAGGATCGACA
GTACGTAAGGGGGACCGGGTCGATCCCTGACTTACGCATTATGCCTCTTCGCCGGCTGAGCACCC
GCACACTCGTTTCGTGGGTTGACTTAG
Found at i:34364501 original size:302 final size:303
Alignment explanation
Indices: 34363949--34364561 Score: 800
Period size: 302 Copynumber: 2.0 Consensus size: 303
34363939 AATAGGATCC
* * * *
34363949 GCAGCACGGAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTACCTCTTCGGCCGGCTGAGC
1 GCAGCACGCAGGGGGGACCGGGTCGATCCCCGGCTTGCACATTCTACCTCTCCGGCCAGCTGAGC
* *
34364014 TCCCGTACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGC
66 ACCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGC
* * * * * * *
34364079 TGAACCGAGGGTTGTGGCAGCAGAACCGGCAGCACGCAGAGAGGGATCGGGTTGATCCCTAGCTT
131 CGAACCAAGGGTTGTGGCAACAGAACCGGCAGCACGCAAAGAGGGACCGGGTTAAACCCTAGCTT
* * * *
34364144 ACGCATTATGCCTCTTCGACTGGGTCACCGCCCACACATTCGTTTCGTAGGTTGGCTTAGGC-CG
196 ACGCATTATGCCTCTTAGACTGGCTCACCGCCCACACATTCATTTCATAGGTTGGCTTAGGCACG
*
34364208 AAGTTCATTCCATGTCTAAGCCCCAGCTGGATCGAGGGATGTG
261 AAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAGGGATGTG
* * *
34364251 GCAGCACGCAGGGGGGACCGGGTCGATCCCCGGCTTGCACATTTTGCCTCTCCGGTCAGCTGAGC
1 GCAGCACGCAGGGGGGACCGGGTCGATCCCCGGCTTGCACATTCTACCTCTCCGGCCAGCTGAGC
** *
34364316 ACCCGCACGCCTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGC
66 ACCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGC
* * * * * * * *
34364381 CGGACCAAGGGTTGTGGCAACGGGATCGGTAGCACGTAAAGGGGGACCGGGTTAAACTCTAGCTT
131 CGAACCAAGGGTTGTGGCAACAGAACCGGCAGCACGCAAAGAGGGACCGGGTTAAACCCTAGCTT
* * * *
34364446 TCGCATTATGCCTCTCTAGCCT-GCTCAGCGCCCACAC-TCTCATTTCATGGGTTGGCTTAGGCA
196 ACGCATTATGCCTCT-TAGACTGGCTCACCGCCCACACAT-TCATTTCATAGGTTGGCTTAGGC-
* * * *
34364509 TACGGAGTTTATTCCATGTCTAAGCCCCTGCCGGATCGAGGGTTGTG
258 -ACGAAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAGGGATGTG
*
34364556 GTAGCA
1 GCAGCA
34364562 TGATCGACAG
Statistics
Matches: 265, Mismatches: 41, Indels: 7
0.85 0.13 0.02
Matches are distributed among these distances:
301 1 0.00
302 215 0.81
303 4 0.02
305 45 0.17
ACGTcount: A:0.18, C:0.28, G:0.30, T:0.23
Consensus pattern (303 bp):
GCAGCACGCAGGGGGGACCGGGTCGATCCCCGGCTTGCACATTCTACCTCTCCGGCCAGCTGAGC
ACCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGC
CGAACCAAGGGTTGTGGCAACAGAACCGGCAGCACGCAAAGAGGGACCGGGTTAAACCCTAGCTT
ACGCATTATGCCTCTTAGACTGGCTCACCGCCCACACATTCATTTCATAGGTTGGCTTAGGCACG
AAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAGGGATGTG
Found at i:34364613 original size:159 final size:159
Alignment explanation
Indices: 34364329--34364621 Score: 390
Period size: 159 Copynumber: 1.8 Consensus size: 159
34364319 CGCACGCCTG
* *
34364329 TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCAAGGGTT
1 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCAAGGGTT
* ** * *
34364394 GTGGCAACGGGATCGGTAGCACGTAAAGGGGGACCGGGTTAAACTCTAGCTTTCGCATTATGCCT
66 GTGGCAACAGGATCGACAGCACGTAAAGGGGGACCGGGCTAAACCCTAGCTTTCGCATTATGCCT
34364459 CTCTAGCCTGCTCAGCGCCCACACTCTCA
131 CTCTAGCCTGCTCAGCGCCCACACTCTCA
* * * *
34364488 TTTCATGGGTTGGCTTAGGCATACGGAGTTTATTCCATGTCTAAGCCCCTGCCGGATCGAGGGTT
1 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCAAGGGTT
* * * * * * * * *
34364553 GTGGTAGCATGATCGACAGCACGTAGAGGGGGACTGGGCTGATCCCTGGCTTGT-GTATTATGCC
66 GTGGCAACAGGATCGACAGCACGTAAAGGGGGACCGGGCTAAACCCTAGCTT-TCGCATTATGCC
34364617 TCTCT
130 TCTCT
34364622 GGCCGGTCTC
Statistics
Matches: 113, Mismatches: 20, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
159 112 0.99
160 1 0.01
ACGTcount: A:0.19, C:0.25, G:0.30, T:0.27
Consensus pattern (159 bp):
TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCAAGGGTT
GTGGCAACAGGATCGACAGCACGTAAAGGGGGACCGGGCTAAACCCTAGCTTTCGCATTATGCCT
CTCTAGCCTGCTCAGCGCCCACACTCTCA
Found at i:34364730 original size:26 final size:26
Alignment explanation
Indices: 34364681--34364730 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
34364671 GACTTAGGCA
* *
34364681 TACAGAGTTCATTCCCATTTTAAGCG
1 TACAGAGTTCATTCCCAGTCTAAGCG
*
34364707 TACAGAGTTCATTCCTAGTCTAAG
1 TACAGAGTTCATTCCCAGTCTAAG
34364731 ATTGGACCGG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.28, C:0.22, G:0.16, T:0.34
Consensus pattern (26 bp):
TACAGAGTTCATTCCCAGTCTAAGCG
Found at i:34364924 original size:26 final size:26
Alignment explanation
Indices: 34364876--34364926 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
34364866 TGGGTTAGGC
* *
34364876 ATACGGAGTTCATTCCATGTCTAAGT
1 ATACGAAGTTCATTCCATATCTAAGT
34364902 ATACGAAGTTCATTTCCA-ATCTAAG
1 ATACGAAGTTCA-TTCCATATCTAAG
34364927 ATTAGACCGG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 17 0.77
27 5 0.23
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.33
Consensus pattern (26 bp):
ATACGAAGTTCATTCCATATCTAAGT
Found at i:34364927 original size:196 final size:197
Alignment explanation
Indices: 34364641--34365149 Score: 632
Period size: 197 Copynumber: 2.6 Consensus size: 197
34364631 CTCTAGTCGT
* * * ** * *
34364641 TTGAGGGCCCGTACACTCGTTTCGCGGGTTGACTTAGGCATACAGAGTTCATTCCCAT-TTTAAG
1 TTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATT-CCATGTCTAAG
* * * * ** * * *
34364705 CGTAC-AGAGTTCA-TTCCTAGTCTAAGATTGGACCGGACCGAGGGTTACGGTAGTAGGACCAGT
65 CATACGA-AGTTCATTTCC-AGTCTAAGATTAGACCGGATCGAGGGTTACGGCAACAAGAACAGC
* ** * *
34364768 AGTAGGATCGACAGCATGCA-GGGGGGACCGGGTCGATCCTCGACTTACGTATTCTGCCTCTCCG
128 AGTAGGATCGACAGAACACAGGGGGGGACCGGATCGATCCTCGACTTACGCATTCTGCCTCTCCG
34364832 ATCGG
193 ATCGG
* * * *
34364837 TTGAGCGCCCGCATGCTCGTTTCATGGGTTGGGTTAGGCATACGGAGTTCATTCCATGTCTAAGT
1 TTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGC
*
34364902 ATACGAAGTTCATTTCCAATCTAAGATTAGACCGGATCGAGGGTT-CTGGCAACAAGAACAGCAG
66 ATACGAAGTTCATTTCCAGTCTAAGATTAGACCGGATCGAGGGTTAC-GGCAACAAGAACAGCAG
* *
34364966 TAGGATCGACAGAACACAGGGGGGGACCGGATCGATCCTCGACTTGCGCATTCTGCCTCTCCGGT
130 TAGGATCGACAGAACACAGGGGGGGACCGGATCGATCCTCGACTTACGCATTCTGCCTCTCCGAT
34365031 CGG
195 CGG
* * * *
34365034 TTGAGCGTCCGCACGCTCATTTCATTGGTTGGTTTAGGCATACAGAGTTCATTCCATGTCTAAGC
1 TTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGC
* * *
34365099 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTACGGCA
66 ATACGAAGTTCATTTCCAGTCTAAGATTAGACCGGATCGAGGGTTACGGCA
34365150 GCAGGATCGA
Statistics
Matches: 268, Mismatches: 39, Indels: 11
0.84 0.12 0.03
Matches are distributed among these distances:
195 5 0.02
196 109 0.41
197 153 0.57
198 1 0.00
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.26
Consensus pattern (197 bp):
TTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGC
ATACGAAGTTCATTTCCAGTCTAAGATTAGACCGGATCGAGGGTTACGGCAACAAGAACAGCAGT
AGGATCGACAGAACACAGGGGGGGACCGGATCGATCCTCGACTTACGCATTCTGCCTCTCCGATC
GG
Found at i:34365102 original size:26 final size:26
Alignment explanation
Indices: 34365071--34365123 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34365061 GTTGGTTTAG
34365071 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
34365097 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
34365123 G
1 G
34365124 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:34367353 original size:26 final size:26
Alignment explanation
Indices: 34367323--34367373 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
34367313 TGACTTAGGC
34367323 ATACGGAGTTCATCCCCAGTCTAAGT
1 ATACGGAGTTCATCCCCAGTCTAAGT
*
34367349 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATCCCCAGTCTAAG
34367374 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATCCCCAGTCTAAGT
Found at i:34369635 original size:25 final size:21
Alignment explanation
Indices: 34369584--34369627 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
34369574 CCAGCCCGGG
*
34369584 TGTCCCGCCCATAGTGTGTCA
1 TGTCCCACCCATAGTGTGTCA
34369605 TGTCCCACCCATAGTGTGTCA
1 TGTCCCACCCATAGTGTGTCA
34369626 TG
1 TG
34369628 ACATTCCCTC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.16, C:0.32, G:0.23, T:0.30
Consensus pattern (21 bp):
TGTCCCACCCATAGTGTGTCA
Found at i:34373534 original size:26 final size:27
Alignment explanation
Indices: 34373483--34373536 Score: 67
Period size: 26 Copynumber: 2.0 Consensus size: 27
34373473 TTTGGCTTAG
* *
34373483 GCATACAGGAGTTCATTCCATGTCTAA
1 GCATACAGAAGTTCATTCCATATCTAA
34373510 GCATAC-GAAGTTCATTCC-TAATCTAA
1 GCATACAGAAGTTCATTCCAT-ATCTAA
34373536 G
1 G
34373537 ATTGGAGTTG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
25 1 0.04
26 17 0.71
27 6 0.25
ACGTcount: A:0.31, C:0.22, G:0.17, T:0.30
Consensus pattern (27 bp):
GCATACAGAAGTTCATTCCATATCTAA
Found at i:34374105 original size:26 final size:26
Alignment explanation
Indices: 34374060--34374112 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
34374050 GTTGACTTAG
*
34374060 GCATATGGACTTGATCCCCAGTCTAA
1 GCATATGGACTTCATCCCCAGTCTAA
* *
34374086 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGACTTCATCCCCAGTCTAA
34374112 G
1 G
34374113 ATCAAACTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATATGGACTTCATCCCCAGTCTAA
Found at i:34378533 original size:26 final size:26
Alignment explanation
Indices: 34378496--34378548 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34378486 GTTGGCTTAG
* *
34378496 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCAAGTCTAA
34378522 GCATACGAAGTTCATTCCAAGTCTAA
1 GCATACGAAGTTCATTCCAAGTCTAA
34378548 G
1 G
34378549 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCAAGTCTAA
Found at i:34378906 original size:26 final size:26
Alignment explanation
Indices: 34378877--34378929 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34378867 GTTGACTTAG
34378877 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
34378903 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
34378929 G
1 G
34378930 ATTGGGCCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:34379188 original size:355 final size:356
Alignment explanation
Indices: 34378765--34379529 Score: 934
Period size: 355 Copynumber: 2.2 Consensus size: 356
34378755 ACAGCGGGAT
* * *
34378765 CGACAGCACGCAGAGGGTGATCGGGCTGATCCCCAGCTTACGCATTATGCCTCTCCGTCCAGCCT
1 CGACAGCACACAGAGGGGGATCGGGCTGATCCCCAGCTTACACATTATGCCTCTCCGTCCAGCCT
* * * * *
34378830 CTCTGGTCAGTTGAGCGACC-GTACGCACGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCC
66 CTCTGGTCAGCTGAGCG-CCTGCACGCACGTTTCATGGGTTGACTTAGGCAAACGGAGTTAATCC
* * ** *
34378894 CCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATTGGGCCAGACTGAAGCTTATGACAGCA
130 CCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGCACCAGACTGAAGCTTACGACAGCA
**
34378959 AGATCGACAGCACGCA-GGGAGACCAGGTCGATCCCCGGCTTGTGCATTCTGCCTCTCCAACCGG
195 AGATCGACAGCACGCAGGGGAGACCAGGTCGATCCCCGGCTTACGCATTCTGCCTCTCCAACCGG
* **
34379023 CTT-AGCGCCCATATGCCCGTTTTGTGGGTTGGCTTAGGAATAGAGAGTTCATTCCATGTCTAAG
260 -TTGAGCGCCCACATGCCCGTTTCATGGGTTGGCTTAGGAATAGAGAGTTCATTCCATGTCTAAG
**
34379087 CCCCAACC-GAACCGAGGGTTCTAGCAGTGGGAC
324 CCCCAACCAG-ACCGAGGGTTCTAGCAGTAAGAC
** * *
34379120 CTG-CAGCACACAGAGGGGGATCGGGCTGATCCCTGGCTTACACATTATGCCTCTCTGATCGA-C
1 C-GACAGCACACAGAGGGGGATCGGGCTGATCCCCAGCTTACACATTATGCCTCTCCG-TCCAGC
* * *
34379183 CTCTCTGGTCGGCTGAGCGCCTGCACGCTCGTTTCATGGGTTGACTTAGGCAAATGGAGTTAATC
64 CTCTCTGGTCAGCTGAGCGCCTGCACGCACGTTTCATGGGTTGACTTAGGCAAACGGAGTTAATC
* * * * * * *
34379248 CCCAATCTAAGCATATGGAGTTCATTCCCAGTCTAAGATTGCACCTGATTGAGGGTTGCGATAGC
129 CCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGCACCAGACTGAAGCTTACGACAGC
* * * * ***
34379313 AGGATCGACAGCATGCAGGGGGGACCAGGTCGATCCCCGGCTTACGCATTCTGCCTCTTCGGTCG
194 AAGATCGACAGCACGCAGGGGAGACCAGGTCGATCCCCGGCTTACGCATTCTGCCTCTCCAACCG
* * * * *
34379378 GTTGAGCGCCCGCATGCTCGTTTCATGGGTTGGCTTAGGCATAGGGGGTTCATTCCATGTCTAAG
259 GTTGAGCGCCCACATGCCCGTTTCATGGGTTGGCTTAGGAATAGAGAGTTCATTCCATGTCTAAG
* * *
34379443 CCCCAACCAGACTGAGGGTTGTGGCAGTAAGAC
324 CCCCAACCAGACCGAGGGTTCTAGCAGTAAGAC
* * * *
34379476 CGACAACACACAGAGGGGG-TGCAGG-TCGATCCCCAGCTTGCGCATTATGCCTCT
1 CGACAGCACACAGAGGGGGAT-CGGGCT-GATCCCCAGCTTACACATTATGCCTCT
34379530 TCGACCGGCT
Statistics
Matches: 346, Mismatches: 55, Indels: 17
0.83 0.13 0.04
Matches are distributed among these distances:
354 2 0.01
355 177 0.51
356 166 0.48
357 1 0.00
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (356 bp):
CGACAGCACACAGAGGGGGATCGGGCTGATCCCCAGCTTACACATTATGCCTCTCCGTCCAGCCT
CTCTGGTCAGCTGAGCGCCTGCACGCACGTTTCATGGGTTGACTTAGGCAAACGGAGTTAATCCC
CAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGCACCAGACTGAAGCTTACGACAGCAA
GATCGACAGCACGCAGGGGAGACCAGGTCGATCCCCGGCTTACGCATTCTGCCTCTCCAACCGGT
TGAGCGCCCACATGCCCGTTTCATGGGTTGGCTTAGGAATAGAGAGTTCATTCCATGTCTAAGCC
CCAACCAGACCGAGGGTTCTAGCAGTAAGAC
Found at i:34379524 original size:356 final size:355
Alignment explanation
Indices: 34378654--34379529 Score: 978
Period size: 356 Copynumber: 2.4 Consensus size: 355
34378644 GTCTTCGACT
* * * *
34378654 GGTTGAGCACCCACA-GACTCGTTTCGTGGGTTGGCTTAGCCATACGTAGTTCATTCCATGTCTA
1 GGTTGAGCGCCCACATG-CTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTA
* * *
34378718 AGCCCCAGCCGGACCGAGGGTTGTGGTAGTAGGACCGACAGCGGGATCGACAGCACGCAGAGGGT
65 AGCCCCAACC-GACCGAGGGTTGTGGCAGTAGGACCGACA-----A-C-ACA-CA-G-AGGGGGT
*
34378783 G-ATCGGGCTGATCCCCAGCTTACGCATTATGCCTCTCCGTCCAGCCTCTCTGGTCAGTTGAGCG
119 GCA--GGGCTGATCCCCAGCTTACGCATTATGCCTCTCCGTCCAGCCTCTCTGGTCAGCTGAGCG
* * * * *
34378847 ACCGTACGCACGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGA
182 ACCGCACGCACGTTTCATGGGTTGACTTAGGCAAACGGAGTTAATCCCCAATCTAAGCATACGGA
* ** *
34378912 GTTCATTCCTAGTCTAAGATTGGGCCAGACTGAAGCTTATGACAGCAAGATCGACAGCACGCAGG
247 GTTCATTCCCAGTCTAAGATTGCACCAGACTGAAGCTTACGACAGCAAGATCGACAGCACGCAGG
**
34378977 GAGACCAGGTCGATCCCCGGCTTGTGCATTCTGCCTCTCCAACC
312 GAGACCAGGTCGATCCCCGGCTTACGCATTCTGCCTCTCCAACC
* * * * *
34379021 GGCTT-AGCGCCCATATGCCCGTTTTGTGGGTTGGCTTAGGAATAGAGAGTTCATTCCATGTCTA
1 GG-TTGAGCGCCCACATGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTA
* * * *
34379085 AGCCCCAACCGAACCGAGGGTTCTAGCAGTGGGACCTG-CAGCACACAGAGGGGGAT-C-GGGCT
65 AGCCCCAACCG-ACCGAGGGTTGTGGCAGTAGGACC-GACAACACACAGAGGGGG-TGCAGGGCT
** * * * *
34379147 GATCCCTGGCTTACACATTATGCCTCTCTGATCGA-CCTCTCTGGTCGGCTGAGCG-CCTGCACG
127 GATCCCCAGCTTACGCATTATGCCTCTCCG-TCCAGCCTCTCTGGTCAGCTGAGCGACC-GCACG
* * *
34379210 CTCGTTTCATGGGTTGACTTAGGCAAATGGAGTTAATCCCCAATCTAAGCATATGGAGTTCATTC
190 CACGTTTCATGGGTTGACTTAGGCAAACGGAGTTAATCCCCAATCTAAGCATACGGAGTTCATTC
* * * * * * * * *
34379275 CCAGTCTAAGATTGCACCTGATTGAGGGTTGCGATAGCAGGATCGACAGCATGCAGGGGGGACCA
255 CCAGTCTAAGATTGCACCAGACTGAAGCTTACGACAGCAAGATCGACAGCACGCA-GGGAGACCA
* ***
34379340 GGTCGATCCCCGGCTTACGCATTCTGCCTCTTCGGTC
319 GGTCGATCCCCGGCTTACGCATTCTGCCTCTCCAACC
* * *
34379377 GGTTGAGCGCCCGCATGCTCGTTTCATGGGTTGGCTTAGGCATAGGGGGTTCATTCCATGTCTAA
1 GGTTGAGCGCCCACATGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
* * *
34379442 GCCCCAACCAGACTGAGGGTTGTGGCAGTAAGACCGACAACACACAGAGGGGGTGCAGGTC-GAT
66 GCCCCAACC-GACCGAGGGTTGTGGCAGTAGGACCGACAACACACAGAGGGGGTGCAGGGCTGAT
*
34379506 CCCCAGCTTGCGCATTATGCCTCT
130 CCCCAGCTTACGCATTATGCCTCT
34379530 TCGACCGGCT
Statistics
Matches: 426, Mismatches: 69, Indels: 39
0.80 0.13 0.07
Matches are distributed among these distances:
354 2 0.00
355 158 0.37
356 163 0.38
357 9 0.02
358 2 0.00
359 2 0.00
360 3 0.01
361 1 0.00
366 1 0.00
367 81 0.19
368 4 0.01
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (355 bp):
GGTTGAGCGCCCACATGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
GCCCCAACCGACCGAGGGTTGTGGCAGTAGGACCGACAACACACAGAGGGGGTGCAGGGCTGATC
CCCAGCTTACGCATTATGCCTCTCCGTCCAGCCTCTCTGGTCAGCTGAGCGACCGCACGCACGTT
TCATGGGTTGACTTAGGCAAACGGAGTTAATCCCCAATCTAAGCATACGGAGTTCATTCCCAGTC
TAAGATTGCACCAGACTGAAGCTTACGACAGCAAGATCGACAGCACGCAGGGAGACCAGGTCGAT
CCCCGGCTTACGCATTCTGCCTCTCCAACC
Found at i:34379762 original size:26 final size:26
Alignment explanation
Indices: 34379732--34379788 Score: 71
Period size: 26 Copynumber: 2.2 Consensus size: 26
34379722 GTTGGCTTAG
* *
34379732 GCATACGTAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCAT-TATAA
*
34379758 GCATATGGAGTTCATTCCCATTATAA
1 GCATACGGAGTTCATTCCCATTATAA
34379784 GCATA
1 GCATA
34379789 ATGTGCAACC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
26 23 0.85
27 4 0.15
ACGTcount: A:0.30, C:0.21, G:0.16, T:0.33
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCATTATAA
Found at i:34380390 original size:26 final size:26
Alignment explanation
Indices: 34380353--34380406 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
34380343 TTCAGTCTGA
34380353 GCTTAGACTGGGAATGAACTCCATAT
1 GCTTAGACTGGGAATGAACTCCATAT
* * *
34380379 GCTTAGATTGGGGATGAACTCCGTAT
1 GCTTAGACTGGGAATGAACTCCATAT
34380405 GC
1 GC
34380407 CTCAGTCAAC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
GCTTAGACTGGGAATGAACTCCATAT
Found at i:34380886 original size:196 final size:196
Alignment explanation
Indices: 34380552--34381001 Score: 539
Period size: 196 Copynumber: 2.3 Consensus size: 196
34380542 CCAGCTTGGT
* * *
34380552 CTTAGACATAAAATGAACT-CAGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACCCAG
1 CTTAGACATAGAATGAACTCCA-TATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACCCAA
* * * * * * *
34380616 CCGGTCGGAGAGGCAGAATGCGTAAGTCGGGGATCAGCCCGGCCCCCCCTGCATGTTGTCGATCC
65 CCGATCGGAGAGACAGAATGCGTAAGCCGAGGATCAGCCCGGCACCCACTGCATGTTGCCGATCC
* * * *
34380681 TGCTACTGGTCCTGCTA-TCGCAACCCTCGGTCCGATCTGATATTAGACTGGGAATGAATTCCAT
130 TACTACTGGTCCTGCTACT-GCAACCCTCAGTCCGATCTGATATTAGACTAGGAATGAACTCCAT
34380745 ATG
194 ATG
* * * * * **
34380748 CTTAGACATCGAATGAACTCCATATGCTTAAGCCAACCCATGAAATGAGTGTTCGGGCATTCAAC
1 CTTAGACATAGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACCCAAC
* *
34380813 CGATCGG-GAGATAGAATGCGTAAGCCGAGGATC-GACCCGGTCACCCACTGCGTGTTGCCGATC
66 CGATCGGAGAGACAGAATGCGTAAGCCGAGGATCAG-CCCGG-CACCCACTGCATGTTGCCGATC
* * * * *
34380876 CTACTACTGGTCCTGCTACTGCAACCCTCAGTCTGATTTGATCTTAGATTAGGAATGAACTCCGT
129 CTACTACTGGTCCTGCTACTGCAACCCTCAGTCCGATCTGATATTAGACTAGGAATGAACTCCAT
34380941 ATG
194 ATG
* * * * *
34380944 CTTAGACATGGAATGAACTCCGTATGCCTAGGCTAACCCATGAAACAAGCGTGCGGGC
1 CTTAGACATAGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGC
34381002 GCTTAACCAA
Statistics
Matches: 213, Mismatches: 37, Indels: 8
0.83 0.14 0.03
Matches are distributed among these distances:
194 1 0.00
195 27 0.13
196 182 0.85
197 3 0.01
ACGTcount: A:0.26, C:0.27, G:0.25, T:0.22
Consensus pattern (196 bp):
CTTAGACATAGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACCCAAC
CGATCGGAGAGACAGAATGCGTAAGCCGAGGATCAGCCCGGCACCCACTGCATGTTGCCGATCCT
ACTACTGGTCCTGCTACTGCAACCCTCAGTCCGATCTGATATTAGACTAGGAATGAACTCCATAT
G
Found at i:34381371 original size:159 final size:159
Alignment explanation
Indices: 34381079--34381435 Score: 395
Period size: 159 Copynumber: 2.3 Consensus size: 159
34381069 ATCCTGCTGT
* *
34381079 ACAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGA
1 ACAACCCTCGGTCCGATCTGAGCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCACGA
* * * * * * * * *
34381144 AACGAGCGTGCGTGTGTTGAGCCGACTGGAGAGGCATAATGCGCAAGTCAGGGATCGGCTCGGTC
66 AACGAGCGTGCGGGCGCTCAGCCAACTGGAGAGGCAGAATGCGCAACTCAGGGATCGCCCCGGTC
34381209 CCCCTCTACGTGCTATCGATCTCGCAGCC
131 CCCCTCTACGTGCTATCGATCTCGCAGCC
* *
34381238 ACAACCCTCGGTCCGA-CTAGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCAC
1 ACAACCCTCGGTCCGATCT-GAGCTTAGAC-TGGGAATGAACTCCATATGCCTAAGCCAACCCAC
* * *
34381301 GAAATGGGCGTGCGGGCGCTCAGCCAA-TCGGAGAGGCAGAATGCGCAACTCGGGGAT-GCCCCG
64 GAAACGAGCGTGCGGGCGCTCAGCCAACT-GGAGAGGCAGAATGCGCAACTCAGGGATCGCCCCG
** * * *
34381364 GTCCCCC-CTGTGTGCTGTCGATC-CTGCTGTC
128 GTCCCCCTCTACGTGCTATCGATCTC-GCAGCC
* * * *
34381395 ACAATCCTCGGTCTGAT-TCAATCTTAGACTGGGAATGAACT
1 ACAACCCTCGGTCCGATCT-GAGCTTAGACTGGGAATGAACT
34381436 TCGTATGCTT
Statistics
Matches: 165, Mismatches: 27, Indels: 14
0.80 0.13 0.07
Matches are distributed among these distances:
156 2 0.01
157 49 0.30
158 14 0.08
159 99 0.60
160 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (159 bp):
ACAACCCTCGGTCCGATCTGAGCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCACGA
AACGAGCGTGCGGGCGCTCAGCCAACTGGAGAGGCAGAATGCGCAACTCAGGGATCGCCCCGGTC
CCCCTCTACGTGCTATCGATCTCGCAGCC
Found at i:34382183 original size:26 final size:26
Alignment explanation
Indices: 34382140--34382192 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
34382130 GGCTCAAAAT
*
34382140 CTTAGACTGGTAATGAACTCCGTATG
1 CTTAGACTGGTAAAGAACTCCGTATG
*
34382166 CTTAGACGTGG-AAAGAACTTCGTATG
1 CTTAGAC-TGGTAAAGAACTCCGTATG
34382192 C
1 C
34382193 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGTAAAGAACTCCGTATG
Found at i:34382678 original size:26 final size:26
Alignment explanation
Indices: 34382642--34382694 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
34382632 CCGATCCGAT
*
34382642 CTTAGATTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
*
34382668 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
34382694 C
1 C
34382695 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:34383551 original size:26 final size:26
Alignment explanation
Indices: 34383522--34383574 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
34383512 CCAGTCTGAT
34383522 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
* * *
34383548 CTTAGGCTGGGGATGAATTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
34383574 C
1 C
34383575 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.23, C:0.15, G:0.30, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:34384283 original size:26 final size:26
Alignment explanation
Indices: 34384233--34384285 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
34384223 GGCTCAAAAT
*
34384233 CTTAGACTGGGAATGAACTATGTATG
1 CTTAGACTGGGAATGAACTACGTATG
*
34384259 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTACGTATG
34384285 C
1 C
34384286 CTAAGCTAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:34384699 original size:158 final size:158
Alignment explanation
Indices: 34384361--34384704 Score: 379
Period size: 158 Copynumber: 2.2 Consensus size: 158
34384351 GGGACCAGCG
* * ** *
34384361 CAAGCTGGGGATAGGCCCGGTCTCCCTATGCGTGCTGTCGGTCCCGCAGCCACAACCCTCGGTTT
1 CAAGCT-GGGATAGGCCCGATCCCCCTATGCGTGCTACCGGTCCCGCAGCCACAACCCTCGGTTC
* ** *
34384426 AGTTGGGGCTTAGACATGGAATGAACTCCCTATGTTTAAGCCAACCCACGAAACGGGCGTGCGGG
65 AGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGACGTGCGGG
** *
34384491 TGCTCAGCTGATCGAAGAGGCAAAATGCA
130 CACTCAGCTGATAGAAGAGGCAAAATGCA
* * * * *
34384520 CAAGCCTGGGATCA-GCTCGATCCCCCTCTGCGTTCTACCGGTCCTGCTGCCACAACCCTCGG-T
1 CAAG-CTGGGAT-AGGCCCGATCCCCCTATGCGTGCTACCGGTCCCGCAGCCACAACCCTCGGTT
* * *
34384583 CGGCTGGGGCTTAGACATGGAATTAACTCCCTATGCCTAAGCCAACCCATGAAACGGACGTGCGG
64 CAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGACGTGCGG
* * * * *
34384648 GCACTTAGCTAGCTAG-AGAGGTAGAATGCG
129 GCACTCAGCT-GATAGAAGAGGCAAAATGCA
* *
34384678 TAAGCTGAGGATTGGCCCGATCCCCCT
1 CAAGCTG-GGATAGGCCCGATCCCCCT
34384705 TACATGCTGT
Statistics
Matches: 152, Mismatches: 28, Indels: 11
0.80 0.15 0.06
Matches are distributed among these distances:
157 3 0.02
158 95 0.62
159 51 0.34
160 3 0.02
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (158 bp):
CAAGCTGGGATAGGCCCGATCCCCCTATGCGTGCTACCGGTCCCGCAGCCACAACCCTCGGTTCA
GCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGACGTGCGGGC
ACTCAGCTGATAGAAGAGGCAAAATGCA
Found at i:34385148 original size:26 final size:26
Alignment explanation
Indices: 34385119--34385171 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
34385109 CCGATCTACT
34385119 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
34385145 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
34385171 C
1 C
34385172 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:34385475 original size:185 final size:180
Alignment explanation
Indices: 34384959--34385515 Score: 576
Period size: 185 Copynumber: 3.0 Consensus size: 180
34384949 TCCAGTTGGG
* * * * *
34384959 GCTTAGACATGGAATGAACTCAGTATGCCTAAGCCAACCCATGAAACGAACGTACGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTC-A
* * * * * *
34385024 CCCGTCGAAGGGGCAGAATGTGCAAGCCGGGGATCGACCCAGTCCCCCCCTGCGTGCTGCTGATC
65 GCCGTCGAAGAGGCAGAATGCGCAAG-CAGGGATCGACCCGGT-CCCCCCTGCGTGCTTC-GATC
* * * ** * *
34385089 CTACTACTGCAACCCTTAGTCCGATCTACTCTTAGACTGGGAATGAACTCCGTAT
127 CTGCTTC-GCAACCCTCAGTTTGATCCACTCTTAGACTGGGAATGAACTCCATAT
* * * *
34385144 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACTCACGAAATGAGTGTGCAGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * * * * *
34385209 TCGATCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCCTTGCGTGCTGTTGGTC
66 CCG-TCGAAGAGGCAGAATGCGCAAGCAG-GGATCGACCCGGTCCCCCC-TGCGTGCT-TCGATC
* * *
34385274 CTGCTATCGCAACCCTCGGTTTGATCCGA-TCTTAGACTGGGAATGAACTCTATCT
127 CTGCT-TCGCAACCCTCAGTTTGATCC-ACTCTTAGACTGGGAATGAACTCCATAT
*
34385329 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * * * * *
34385394 CCAGTCGAAGAGGCAGAATGCACAAGTTAGGGATCGACCCGGTGCACCTCTGTGTCCTATCGATC
66 CC-GTCGAAGAGGCAGAATGCGCAAG-CAGGGATCGACCCGGT-CCCCCCTGCGTGCT-TCGATC
* * * * *
34385459 ATGCTGTCGTAACCCTCAGTTTGATCCATTCTTAGATTGGGAATGAACTCCGTAT
127 CTGCT-TCGCAACCCTCAGTTTGATCCACTCTTAGACTGGGAATGAACTCCATAT
34385514 GC
1 GC
34385516 CAAAGTCAAC
Statistics
Matches: 306, Mismatches: 56, Indels: 20
0.80 0.15 0.05
Matches are distributed among these distances:
184 12 0.04
185 286 0.93
186 8 0.03
ACGTcount: A:0.25, C:0.28, G:0.25, T:0.22
Consensus pattern (180 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
CCGTCGAAGAGGCAGAATGCGCAAGCAGGGATCGACCCGGTCCCCCCTGCGTGCTTCGATCCTGC
TTCGCAACCCTCAGTTTGATCCACTCTTAGACTGGGAATGAACTCCATAT
Found at i:34385857 original size:26 final size:26
Alignment explanation
Indices: 34385806--34385858 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
34385796 CTGGTTCAAT
*
34385806 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
34385832 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCATATG
34385858 C
1 C
34385859 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:34386557 original size:26 final size:26
Alignment explanation
Indices: 34386519--34386571 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
34386509 GGCTCAAAAT
34386519 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
34386545 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
34386571 C
1 C
34386572 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:34386928 original size:159 final size:159
Alignment explanation
Indices: 34386544--34386928 Score: 431
Period size: 159 Copynumber: 2.4 Consensus size: 159
34386534 AACTCCGTAT
*
34386544 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACG-AACGAGCGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAG
* * * * * *
34386608 CCGACCGGAGAGGCAGAATGCGCAAGCAAGGGATCAACCCGGTCCCCCCCTGTATGCTGTCAATC
66 CCGACCGAAAAGGCAGAAGGCACAAGCAAGGGATCAACCCGATCCCCCCCTGTATGCTATCAATC
*
34386673 CTGCTGCCACAACCCTCGATCCGGTCTGA
131 CTGCTGCCACAACCCTCGATCCGGTCCGA
* * * * * *
34386702 TCTTAGAC-TGGGAATGAACTCCGTAAGCATAAGTCAACCCATGAAACGAGCGTACGAGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCA
* * *** *
34386766 GCCGACCGAAAAGGCATAAGGCACAAGCCTA-GGATTGGCCCGATCCCCCTCTGCT-TGCTATCA
65 GCCGACCGAAAAGGCAGAAGGCACAAG-CAAGGGATCAACCCGATCCCCCCCTG-TATGCTATCA
* * *
34386829 GT-CTCGTTGCCACAACCCTCTATCCGG-CCGA
128 ATCCT-GCTGCCACAACCCTCGATCCGGTCCGA
* * * * *
34386860 GGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCACTTA
1 -GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCA
34386925 GCCG
65 GCCG
34386929 GCCGGAGAGG
Statistics
Matches: 187, Mismatches: 33, Indels: 13
0.80 0.14 0.06
Matches are distributed among these distances:
157 1 0.01
158 41 0.22
159 141 0.75
160 4 0.02
ACGTcount: A:0.26, C:0.32, G:0.25, T:0.17
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAG
CCGACCGAAAAGGCAGAAGGCACAAGCAAGGGATCAACCCGATCCCCCCCTGTATGCTATCAATC
CTGCTGCCACAACCCTCGATCCGGTCCGA
Found at i:34388884 original size:158 final size:157
Alignment explanation
Indices: 34388642--34389098 Score: 497
Period size: 158 Copynumber: 2.9 Consensus size: 157
34388632 TTAGACATGG
* * *
34388642 AATGAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAGTCGGGGATCGACTCGGTC
1 AATGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGGTC
* ** * *
34388707 CCCCCTACGTGCTTTCGATCTTGCTGTTGCAACCCTTGATCCGATCCAATCTTAGACTGGGAATG
66 CCCCCTGCGTGC-TTCGATCTTGCTGCCGCAACCCTTGGTCCGATCCGATCTTAGACTGGGAATG
* *
34388772 AACTCCGTATGCATAAGTCAACCCACGA
130 AACTCCATATGCATAAGCCAACCCACGA
* * * * *
34388800 AATGAGCGTGCGGGCGCTGAGCTGGCCGAAGAGGCATAATGCGCAAGCCAGGGATCGGCTCGGTC
1 AATGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGGTC
* * * * * ** **
34388865 CCCCTCTGCGTGCTGCGATCTCGCTGCCACAACCCTCGGTCTGATTGGGGCTTAGACAT-GGAAT
66 CCCC-CTGCGTGCTTCGATCTTGCTGCCGCAACCCTTGGTCCGATCCGATCTTAGAC-TGGGAAT
* * *
34388929 GAACTCCCTATGCCTAAGCCAACCCATGA
129 GAACTCCATATGCATAAGCCAACCCACGA
* * * * * * *
34388958 AACGAGCGTACGGGCGCTCAG-GGGCCGGAGAGGCAGAATGCGCATGCGGGGGATCGGCCCGATC
1 AATGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGGTC
* * * * *
34389022 CCCCCTGTGTGCTTCTAATCCTGCTACCGCAACCCTTGGT-CTAGTCCGATCTTAGACTGGGAAT
66 CCCCCTGCGTGCTTC-GATCTTGCTGCCGCAACCCTTGGTCCGA-TCCGATCTTAGACTGGGAAT
34389086 GAACTCCATATGC
129 GAACTCCATATGC
34389099 TTGACTGGGG
Statistics
Matches: 242, Mismatches: 52, Indels: 11
0.79 0.17 0.04
Matches are distributed among these distances:
156 11 0.05
157 83 0.34
158 140 0.58
159 8 0.03
ACGTcount: A:0.21, C:0.30, G:0.29, T:0.20
Consensus pattern (157 bp):
AATGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGGTC
CCCCCTGCGTGCTTCGATCTTGCTGCCGCAACCCTTGGTCCGATCCGATCTTAGACTGGGAATGA
ACTCCATATGCATAAGCCAACCCACGA
Found at i:34390699 original size:26 final size:26
Alignment explanation
Indices: 34390661--34390713 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
34390651 TCGGTCTGAT
** *
34390661 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACAAGGAATGAACTCCGTATG
34390687 CTTAGACAAGGAATGAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
34390713 C
1 C
34390714 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACAAGGAATGAACTCCGTATG
Found at i:34391176 original size:158 final size:154
Alignment explanation
Indices: 34390687--34391180 Score: 436
Period size: 158 Copynumber: 3.1 Consensus size: 154
34390677 ACTCCTTATG
* * * * * *
34390687 CTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGCCACTCAGT
1 CTTAGAC-TGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGG-CACTCAGC
* * * *
34390752 CGCCCAGAGAGGCAGAATGTGCAAGCCGAGGATCCACCCAGTCCCCCCTGCGTGCTGTCGATCCT
64 CGCCCGGAGAGGCAGAATGCGCAAGCAG-GGAT-CACCCGGTCCCCCCTGCGTGCTGTCGATCCT
34390817 AC-AGTCGCAACCCTCAGTCTGGTCTGAT
127 ACTA-TCGCAACCCTCAGTCTGGTCTGAT
* * *
34390845 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCACTGAAC
1 CTTAGACT-GGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGC-GGCACTCAGC
* * * * * * *
34390910 TGCCCGAAAAGGCATAATGCGCACGTCAGGGATCAGCCCGGTCCCCCTATGCGTGCTGCCGATCC
64 CGCCCGGAGAGGCAGAATGCGCAAG-CAGGGATCA-CCCGGTCCCCC-CTGCGTGCTGTCGATCC
* ** * * * **
34390975 CACTGCCACAACCCTC-GATC-CGACTGGG
126 TACTATCGCAACCCTCAG-TCTGGTCTGAT
* * * * *
34391003 GTTATACATGGAATGAACTCCCTATGCCTAAGTCAACCCACGAAACGGGCGTGCAGGCACTTAGC
1 CTTAGAC-TGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGC-GGCACTCAGC
** * * ** *
34391068 CAACCGGAGAGGCAGAATGCACAAGCTGTGGATCGACCCGGTCCCCCCTGTATGGTGTCGATCCT
64 CGCCCGGAGAGGCAGAATGCGCAAGCAG-GGATC-ACCCGGTCCCCCCTGCGTGCTGTCGATCCT
* *
34391133 ACTATCGCAACCATCAGTCTGGTCCGAT
127 ACTATCGCAACCCTCAGTCTGGTCTGAT
*
34391161 CTTAGACTGAAAATGAACTC
1 CTTAGACTG-GAATGAACTC
34391181 TGTATGGTTA
Statistics
Matches: 260, Mismatches: 63, Indels: 26
0.74 0.18 0.07
Matches are distributed among these distances:
157 31 0.12
158 195 0.75
159 34 0.13
ACGTcount: A:0.26, C:0.32, G:0.24, T:0.18
Consensus pattern (154 bp):
CTTAGACTGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGCACTCAGCCG
CCCGGAGAGGCAGAATGCGCAAGCAGGGATCACCCGGTCCCCCCTGCGTGCTGTCGATCCTACTA
TCGCAACCCTCAGTCTGGTCTGAT
Found at i:34392064 original size:159 final size:158
Alignment explanation
Indices: 34391880--34392824 Score: 704
Period size: 159 Copynumber: 6.0 Consensus size: 158
34391870 TGGTCCAATA
* * * * *
34391880 TTAGAC-TGGGAATGAACTCTGTATGCATAAGTCAACCCATGAAACGAGCGTCCAGGCGCTAAGC
1 TTAGACAT-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGC
* * * *
34391944 CAGCCGAAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGGTGCACCTCTGCGTGCTGTCGGTCC
65 CAGCCGGAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGGT-CCCCCCTGCGTGCTATCGGTCC
* *
34392009 GGCTGAGACAACCCTCGGTCCGGCTGGGGC
129 TGCTGCGACAACCCTCGGTCCGGCTGGGGC
* * * * * *
34392039 TTTGACATGAAATGAACTCCCTATGCCTAAG-CAAACCCACGAAACAAGCGTGCGGGCGGTCAGC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGTC-AACCCACGAAACGAGCGTGCAGGCGCTCAGC
* * * * * * *
34392103 CAGCCAGAGAGGTAGAATGCACAAGCCGGGGATCGGCCCGATCCCCCCCTGCGTGCTATTGATCC
65 CAGCCGGAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGGT-CCCCCCTGCGTGCTATCGGTCC
* * * **
34392168 TGCTGCCG-CAACCCTCAGTCCGGTTCGATC
129 TGCTG-CGACAACCCTCGGTCCGGCTGGGGC
* * * * *
34392198 TCAGAC-TAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACAGGTGCTGAGC
1 TTAGACAT-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGC
* * * *** *
34392262 C-GATCGGAGTGGCATAATGCGCAAGCCGAGGATCTATCCGGTCCCCTACTGCGTGCTATCGGTC
65 CAG-CCGGAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGGTCCCC-CCTGCGTGCTATCGGTC
* * * * *
34392326 CTGCTGCCATAACCCTCGGTCTGACTAGGGC
128 CTGCTGCGACAACCCTCGGTCCGGCTGGGGC
* * * * ** *
34392357 TTAGACAAGGAATGAGCTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGGGGGCTCTCAGCC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGCC
* * * * * * * * * * *
34392422 GGCCGGAGAGGCAGAATGTGCAAGCCGTGGATTGGCCTGATCACCCCTACGTGCTATCGATCCTA
66 AGCCGGAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTATCGGTCCTG
* * * ***
34392487 CTACCG-TAACCCTCGGTCTGGTCT-AATC
131 CT-GCGACAACCCTCGGTCCGG-CTGGGGC
* * * * *
34392515 TTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACACACGAAATGAGCATG-AGGGCACTTAG
1 TTAGACAT-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCA-GGCGCTCAG
* * * * * * *
34392578 CCGGTCGGAGAGGCATAATGCGCAAGCTGGGGATCGGCCCAGTTCCCCACTACGTGCTACCGGTC
64 CCAGCCGGAGAGGCATAATGCGCAAGCCGGGGATCGGCCC-GGTCCCCCCTGCGTGCTATCGGTC
** * * *
34392643 CCACTGCCAGAACCCTCGGTCCGACTGGGGC
128 CTGCTGCGACAACCCTCGGTCCGGCTGGGGC
* * * * * * * * *
34392674 TTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCATGAAATGGGTGCGCATGCACTCAGCC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGCC
* * * * * * * * * * * *
34392739 GGTCGGAGAGGCAGAATGCGCAAGCTGGAGATCGGCCTGATGCCCCCTGCATGCTGTCGATCCTA
66 AGCCGGAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTATCGGTCCTG
* *
34392804 CTACTG-CAACCCTCGATCCGG
131 CTGC-GACAACCCTCGGTCCGG
34392825 TCCAATCTTA
Statistics
Matches: 610, Mismatches: 156, Indels: 41
0.76 0.19 0.05
Matches are distributed among these distances:
158 161 0.26
159 443 0.73
160 6 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (158 bp):
TTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGCC
AGCCGGAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTATCGGTCCTG
CTGCGACAACCCTCGGTCCGGCTGGGGC
Found at i:34392596 original size:317 final size:316
Alignment explanation
Indices: 34391776--34392853 Score: 1128
Period size: 317 Copynumber: 3.4 Consensus size: 316
34391766 ATGAACTACA
* ** * ** * *
34391776 GGCACTCAGTCGGCTAGAGAGGC-GAAATGCGCAAGTCGGGGAAAGGCTTGATCCCTCCTGCGTG
1 GGCACTCAGCCGGCCGGAGAGGCAG-AATGCGCAAG-CCGGGATCGGCCTGATCCCCCCTGCGTG
* * ** * ** * * *
34391840 CTGTCGATCCTGCTGTCGCAACACTCGGTTTGGTCCAATATTAGACTGGGAATGAACTCTGTATG
64 CTATCGATCCTACTACCGCAACCCTCGGTCCGGTCCAATCTTAGACTAGGAATGAACTCCGTATG
* * * * * * *
34391905 CATAAGTCAACCCATGAAACGAGCGTCCA-GGCGCTAAGCCAGCCGAAGAGGCATAATGCGCAAG
129 CCTAAGTCAACCCACGAAATGAGCGTACAGGGC-CTAAGCCGGTCGGAGAGGCATAATGCGCAAG
* * * ** *
34391969 CCGGGGATCGGCCCGGTGCACCT-CTGCGTGCTGTCGGTCCGGCTGAGACAACCCTCGGTCCGGC
193 CCGGGGATCGGCCCGGT-CCCCTACTGCGTGCTATCGGTCCCGCTGCCACAACCCTCGGTCCGAC
* * * * * *
34392033 TGGGGCTTTGACATGAAATGAACTCCCTATGCCTAAGCAAACCCACGAAACAAGCGTGCG
257 TGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGGG
** * * * * *
34392093 GGCGGTCAGCCAGCCAGAGAGGTAGAATGCACAAGCCGGGGATCGGCCCGATCCCCCCCTGCGTG
1 GGCACTCAGCCGGCCGGAGAGGCAGAATGCGCAAGCC-GGGATCGGCCTGAT-CCCCCCTGCGTG
* * * * * * *
34392158 CTATTGATCCTGCTGCCGCAACCCTCAGTCCGGTTCGATCTCAGACTAGGAATGAACTCCGTATG
64 CTATCGATCCTACTACCGCAACCCTCGGTCCGGTCCAATCTTAGACTAGGAATGAACTCCGTATG
* * *
34392223 CCTAAGTCAACCCACGAAATGAGCGTACAGGTG-CTGAGCCGATCGGAGTGGCATAATGCGCAAG
129 CCTAAGTCAACCCACGAAATGAGCGTACAGG-GCCTAAGCCGGTCGGAGAGGCATAATGCGCAAG
* *** * * *
34392287 CCGAGGATCTATCCGGTCCCCTACTGCGTGCTATCGGTCCTGCTGCCATAACCCTCGGTCTGACT
193 CCGGGGATCGGCCCGGTCCCCTACTGCGTGCTATCGGTCCCGCTGCCACAACCCTCGGTCCGACT
* * * *
34392352 AGGGCTTAGACAAGGAATGAGCTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGGG
258 GGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGGG
* * * * *
34392411 GGCTCTCAGCCGGCCGGAGAGGCAGAATGTGCAAGCCGTGGATTGGCCTGATCACCCCTACGTGC
1 GGCACTCAGCCGGCCGGAGAGGCAGAATGCGCAAGCCG-GGATCGGCCTGATCCCCCCTGCGTGC
* * * *
34392476 TATCGATCCTACTACCGTAACCCTCGGTCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGC
65 TATCGATCCTACTACCGCAACCCTCGGTCCGGTCCAATCTTAGACTAGGAATGAACTCCGTATGC
* * * *
34392541 CTAAGTCAACACACGAAATGAGCAT-GAGGGCACTTAGCCGGTCGGAGAGGCATAATGCGCAAGC
130 CTAAGTCAACCCACGAAATGAGCGTACAGGGC-CTAAGCCGGTCGGAGAGGCATAATGCGCAAGC
* * * * * *
34392605 TGGGGATCGGCCCAGTTCCCC-ACTACGTGCTACCGGTCCCACTGCCAGAACCCTCGGTCCGACT
194 CGGGGATCGGCCC-GGTCCCCTACTGCGTGCTATCGGTCCCGCTGCCACAACCCTCGGTCCGACT
* * *
34392669 GGGGCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCATGAAATG-G-GTGCGCA
258 GGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTG-G-G
* * * * *
34392728 TGCACTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCTGGAGATCGGCCTGATGCCCCCTGCATGC
1 GGCACTCAGCCGGCCGGAGAGGCAGAATGCGCAAGCCGG-GATCGGCCTGATCCCCCCTGCGTGC
* * *
34392793 TGTCGATCCTACTACTGCAACCCTCGATCCGGTCCAATCTTAGACTAGGAATGAACTCCGT
65 TATCGATCCTACTACCGCAACCCTCGGTCCGGTCCAATCTTAGACTAGGAATGAACTCCGT
34392854 TTGCTTAGAC
Statistics
Matches: 627, Mismatches: 121, Indels: 26
0.81 0.16 0.03
Matches are distributed among these distances:
315 4 0.01
316 7 0.01
317 356 0.57
318 258 0.41
319 1 0.00
320 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.19
Consensus pattern (316 bp):
GGCACTCAGCCGGCCGGAGAGGCAGAATGCGCAAGCCGGGATCGGCCTGATCCCCCCTGCGTGCT
ATCGATCCTACTACCGCAACCCTCGGTCCGGTCCAATCTTAGACTAGGAATGAACTCCGTATGCC
TAAGTCAACCCACGAAATGAGCGTACAGGGCCTAAGCCGGTCGGAGAGGCATAATGCGCAAGCCG
GGGATCGGCCCGGTCCCCTACTGCGTGCTATCGGTCCCGCTGCCACAACCCTCGGTCCGACTGGG
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGGG
Found at i:34393152 original size:277 final size:277
Alignment explanation
Indices: 34392647--34393191 Score: 946
Period size: 277 Copynumber: 2.0 Consensus size: 277
34392637 CCGGTCCCAC
*
34392647 TGCCAGAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCC
1 TGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCC
* ** *
34392712 ATGAAATGGGTGCGCATGCACTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCTGGAGATCGGCCT
66 ACGAAATGCATGCGCATGCACTCAGCCGGTCAGAGAGGCAGAATGCGCAAGCTGGAGATCGGCCT
34392777 GATGCCCCCTGCATGCTGTCGATCCTACTACTGCAACCCTCGATCCGGTCCAATCTTAGACTAGG
131 GATGCCCCCTGCATGCTGTCGATCCTACTACTGCAACCCTCGATCCGGTCCAATCTTAGACTAGG
* *
34392842 AATGAACTCCGTTTGCTTAGACTAGGGATGAACTCCGGTGCCTAAGTCAACCCACGAAACGAGTG
196 AATGAACTCCGTTTACTTAGACTAGGAATGAACTCCGGTGCCTAAGTCAACCCACGAAACGAGTG
34392907 TGCGGGTGAGGTCCTGT
261 TGCGGGTGAGGTCCTGT
*
34392924 TGCCACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCC
1 TGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCC
* * *
34392989 ACGAAATGCATGGGCGTGCACTCAGCCGGTCAGAGAGGCAGAATGCGCAAGCTGGAGATTGGCCT
66 ACGAAATGCATGCGCATGCACTCAGCCGGTCAGAGAGGCAGAATGCGCAAGCTGGAGATCGGCCT
* * * *
34393054 GATGCCCCCTGCGTGCTGTCGATCCTGCTGCTGCAACCCTCGATCCGGTCCCATCTTAGACTAGG
131 GATGCCCCCTGCATGCTGTCGATCCTACTACTGCAACCCTCGATCCGGTCCAATCTTAGACTAGG
*
34393119 AATGAACTCCGTTTACTTAGACTAGGAATGAACTCCGGTGCCTAAGTCAACCCATGAAACGAGTG
196 AATGAACTCCGTTTACTTAGACTAGGAATGAACTCCGGTGCCTAAGTCAACCCACGAAACGAGTG
34393184 TGCGGGTG
261 TGCGGGTG
34393192 CTCAGCCAGT
Statistics
Matches: 252, Mismatches: 16, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
277 252 1.00
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.21
Consensus pattern (277 bp):
TGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCC
ACGAAATGCATGCGCATGCACTCAGCCGGTCAGAGAGGCAGAATGCGCAAGCTGGAGATCGGCCT
GATGCCCCCTGCATGCTGTCGATCCTACTACTGCAACCCTCGATCCGGTCCAATCTTAGACTAGG
AATGAACTCCGTTTACTTAGACTAGGAATGAACTCCGGTGCCTAAGTCAACCCACGAAACGAGTG
TGCGGGTGAGGTCCTGT
Found at i:34394023 original size:26 final size:26
Alignment explanation
Indices: 34393985--34394037 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34393975 GGCTCAAAAT
*
34393985 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
34394011 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
34394037 C
1 C
34394038 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34394221 original size:26 final size:26
Alignment explanation
Indices: 34394169--34394221 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
34394159 CTGATCCGAT
* **
34394169 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCACATG
*
34394195 CTTAGACTGGGGATGAACTCCACATG
1 CTTAGACTGGGAATGAACTCCACATG
34394221 C
1 C
34394222 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCACATG
Found at i:34395273 original size:26 final size:26
Alignment explanation
Indices: 34395222--34395274 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
34395212 GGCTCAGAAT
*
34395222 CTTAGACTGGGAATGAACTGCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
34395248 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
34395274 C
1 C
34395275 CTAATCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:34395549 original size:159 final size:158
Alignment explanation
Indices: 34395248--34395743 Score: 448
Period size: 159 Copynumber: 3.1 Consensus size: 158
34395238 ACTGCATATG
* * * ** * * *
34395248 CTTAGAC-ATGGAATGAACTCCGTATGCCTAATCCAACCCACAAAACGAGCATGCGGGCGCTCAG
1 CTTAGACTA-GGAATGAACTCCATATGCATAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAA
* * * * * * ** * *
34395312 TCGACCGGAGAGGCAGAATGCGCAAG-CTTGGGATCAACCTGAAACCCCCTTGTGTGCTGTCGAT
65 CCGGCCAGAGAGGCAAAATGCGCAAGCCGT-GGATCAGCCTG-GTCCCCCCTGCGTGCTGTCGAT
* * *
34395376 CCTGCTACCGCAACCCTCGGTCCGGTCCAAT
128 CCTACTGCCGCAACCCTCGGTCCGGTCCGAT
* * * *
34395407 CTTCA-ACTAGGAATGAACTCCATATGCATAAGTCAACCCATGAAACGAGCGTGCGGGTGTTGAG
1 CTT-AGACTAGGAATGAACTCCATATGCATAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAA
** * * *
34395471 CCGG-TTGAAGAGGCATAATGCGCAAGCCG-GTGATC-GACCTGGTCCCACTCTGCGTGCTGTTG
65 CCGGCCAG-AGAGGCAAAATGCGCAAGCCGTG-GATCAG-CCTGGTCCC-CCCTGCGTGCTGTCG
* ** ** **
34395533 ATCCTACTGCCACAACCCTCGGTTTGGTTGGGG
126 ATCCTACTGCCGCAACCCTCGGTCCGGTCCGAT
* * * * *
34395566 CTTAGAC-ATGGAATTAACTCCCTATGCTTAAGCCAACCCATGAAACGGGCGTGTGGGTGCTCAA
1 CTTAGACTA-GGAATGAACTCCATATGCATAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAA
* *
34395630 CTGGCCAGAGGGGCAAAATGCGCAAGCCGTGGATCAGCCTGGTCCCCCCTGCGTGCTGTCGATCC
65 CCGGCCAGAGAGGCAAAATGCGCAAGCCGTGGATCAGCCTGGTCCCCCCTGCGTGCTGTCGATCC
34395695 TACTGCCGCAACCCTCGGTCCGGTCCGAT
130 TACTGCCGCAACCCTCGGTCCGGTCCGAT
* *
34395724 ATTAGACTGGGAATGAACTC
1 CTTAGACTAGGAATGAACTC
34395744 GATTTGCTTA
Statistics
Matches: 265, Mismatches: 59, Indels: 27
0.75 0.17 0.08
Matches are distributed among these distances:
158 62 0.23
159 197 0.74
160 6 0.02
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (158 bp):
CTTAGACTAGGAATGAACTCCATATGCATAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAAC
CGGCCAGAGAGGCAAAATGCGCAAGCCGTGGATCAGCCTGGTCCCCCCTGCGTGCTGTCGATCCT
ACTGCCGCAACCCTCGGTCCGGTCCGAT
Done.