Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 378 of 402
Found at i:34396120 original size:26 final size:26
Alignment explanation
Indices: 34396081--34396134 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
34396071 GATCTGATCT
34396081 TAGATTGGGAATGAACTCCGTATGCC
1 TAGATTGGGAATGAACTCCGTATGCC
*
34396107 TAGATTGGGGATGAACTCCGTATGCC
1 TAGATTGGGAATGAACTCCGTATGCC
34396133 TA
1 TA
34396135 AGTCAACCCT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
TAGATTGGGAATGAACTCCGTATGCC
Found at i:34396202 original size:355 final size:355
Alignment explanation
Indices: 34395534--34396203 Score: 846
Period size: 355 Copynumber: 1.9 Consensus size: 355
34395524 GTGCTGTTGA
* ** * *
34395534 TCCTACTGCCACAACCCTCGGTTTGGTTGGGGCTTAGACATGGAATTAACTCCCTATGCTTAAGC
1 TCCTACTGCCACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGC
* * * ** * * * *
34395599 CAACCCATGAAACGGGCGTGTGGGTGCTCAACTGGCCAGAGGGGCAAAATGCGCAAGCCGTGGAT
66 CAACCCACGAAACGAGCGTGCGGCCGCTCAACCGGCCAGAGAGGCAAAAAGCGCAAGCCGGGGAT
* * * * *
34395664 CAGCCTGGTCCCCCCTGCGTGCTGTCGATCCTACTGCCGCAACCCTCGGTCCGGTCCGATATTAG
131 CAGCCCGATCCCCCCTGCGTGCTGCCGATCCTACTGCCGCAACCCTCGATCCGATCCGATATTAG
* * *
34395729 ACTGGGAATGAACTCGATTTGCTTAGACTGGTGATGAACTCCGTATGCCTAAGTCAACCCATGAA
196 ACTGGGAATGAACTCGATATGCCTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAA
* ** * *
34395794 ATGAGCGTGCGGGTGCTCAACCGGTCGAAAAGGCATAATACGCAAGTCGGGGATCAGCCCGATCC
261 ATGAGCGTGCGGGAGCTCAACCGACCGAAAAGGCAGAATACGCAAGCCGGGGATCAGCCCGATCC
34395859 ACCTCTGCGTGCTGCAGATCTCGCTGTCAG
326 ACCTCTGCGTGCTGCAGATCTCGCTGTCAG
* * * *
34395889 TCCTGCTGCCACAACCGTCGGTCTGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGG
1 TCCTACTGCCACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGC
* * *
34395954 CAACCCACGAAACGAGCGTGCGGCCGCTCAGCCGGTC-GAAGAGGCAAAAAGTGCAAGCCGGGGA
66 CAACCCACGAAACGAGCGTGCGGCCGCTCAACCGGCCAG-AGAGGCAAAAAGCGCAAGCCGGGGA
* * * * * * *
34396018 TCGGCCCGATCCTCCCTGCGTGCTGCCGATCCTGCTGTCGCAACCCTCGATCTGATCTGATCTTA
130 TCAGCCCGATCCCCCCTGCGTGCTGCCGATCCTACTGCCGCAACCCTCGATCCGATCCGATATTA
* *
34396083 GATTGGGAATGAACTCCG-TATGCCTAGATTGGGGATGAACTCCGTATGCCTAAGTCAACCC-TC
195 GACTGGGAATGAACT-CGATATGCCTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCAT-
* * *
34396146 GAAATGAGCGT-CTGGGAGCTCAACCGACC-AGAGAGGCAGGATGCGCAAGCCGGGGATC
258 GAAATGAGCGTGC-GGGAGCTCAACCGACCGA-AAAGGCAGAATACGCAAGCCGGGGATC
34396204 GGACGGGTGG
Statistics
Matches: 264, Mismatches: 46, Indels: 10
0.82 0.14 0.03
Matches are distributed among these distances:
354 4 0.02
355 258 0.98
356 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (355 bp):
TCCTACTGCCACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGC
CAACCCACGAAACGAGCGTGCGGCCGCTCAACCGGCCAGAGAGGCAAAAAGCGCAAGCCGGGGAT
CAGCCCGATCCCCCCTGCGTGCTGCCGATCCTACTGCCGCAACCCTCGATCCGATCCGATATTAG
ACTGGGAATGAACTCGATATGCCTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAA
ATGAGCGTGCGGGAGCTCAACCGACCGAAAAGGCAGAATACGCAAGCCGGGGATCAGCCCGATCC
ACCTCTGCGTGCTGCAGATCTCGCTGTCAG
Found at i:34397561 original size:11 final size:11
Alignment explanation
Indices: 34397547--34397572 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
34397537 GCTCTCCAAT
34397547 GATGCTCCGAC
1 GATGCTCCGAC
34397558 GATGCTCCGAC
1 GATGCTCCGAC
34397569 GATG
1 GATG
34397573 GTGCCCCGGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.19, C:0.31, G:0.31, T:0.19
Consensus pattern (11 bp):
GATGCTCCGAC
Found at i:34398545 original size:26 final size:26
Alignment explanation
Indices: 34398509--34398561 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
34398499 CCAGTCCGAT
34398509 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
34398535 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
34398561 C
1 C
34398562 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:34405607 original size:26 final size:26
Alignment explanation
Indices: 34405571--34405621 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
34405561 CCAGTCTGAT
*
34405571 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
34405597 CTTAGACTGGGGATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
34405622 ACCTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34406212 original size:317 final size:314
Alignment explanation
Indices: 34405735--34406585 Score: 874
Period size: 317 Copynumber: 2.7 Consensus size: 314
34405725 CCCCCTGCCG
* * * *
34405735 GTCCTTCTGCCAC-AACCTTCAGTCCGGTTGGGGCTTAGACATGGAATGAACTCCGTATA-CCTA
1 GTCCTGCTGCCACAAACC-TCAGTTCGGATGGGGCTTAGACATGGAATGAACTCCCTA-AGCCTA
* * * * * * * * *
34405798 AGCCAACCAACGAAATGAGCGTGCGGGCACTCAACCGGCCGGAGAGGCATAATGCGCAAGCCGGG
64 AGCCAACCCACGAAACGGGCGTGCGGGCGCTC-AGCAGCCGGAGAGGCAAAATGCGTAAG-CGAG
* * * * * * *
34405863 GTTCGACCCGGTCCCCCCTATGTGCTGTCGATCCTACTACAGCAACCCTCGGTCCGGTCTAATCT
127 GATCGGCTCGGT-CCCCCTACGTGCTGTCGATCCTACTGCCGCAACCCTCGGTCCGGTCTGATCT
* *
34405928 GAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACAAAAC-AAGCGTGCGGACGCTGAGCC
191 TAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACAAAACGAA-CGTGCGGACACTGAGCC
* * * * * * *
34405992 GA-TCGAAGAGGTATAATGCGCAAG-CTGAGGACCGGCTCGGTCCCCCTCTACGTGTTG-CTA
255 GACT-GAAGAGGCATAATGCGCAAGCCAG-GGACCGACCCGATCCCCCTCTACATGCTGTC-A
*
34406052 GTCCTGCTGCCACAAACCTCAGTTCGGATGGGGCCTAGACATGGAATGAACTCCCTAAGCCTAAG
1 GTCCTGCTGCCACAAACCTCAGTTCGGATGGGGCTTAGACATGGAATGAACTCCCTAAGCCTAAG
* * * * *
34406117 CCAACCCATGAAACGGGCGTGCGGGCGCTCAGCTGCCCGAAGAGGTAGAATGCGTAAGTCGAGGA
66 CCAACCCACGAAACGGGCGTGCGGGCGCTCAGCAG-CCGGAGAGGCAAAATGCGTAAG-CGAGGA
* * * * *
34406182 TCGGCTCGATCTCCCCTGCGTGTTGTCGATCCTACTGCCGTAACCCTCGGTCCAGTCTGATCTTA
129 TCGGCTCGGTC-CCCCTACGTGCTGTCGATCCTACTGCCGCAACCCTCGGTCCGGTCTGATCTTA
* *** *
34406247 GACTGGGAATGAACTCTGTATGCATAAGTCAACCCATGGAACGAACGTGCGGGCACTGAGCCGAC
193 GACTGGGAATGAACTCCGTATGCATAAGTCAACCCACAAAACGAACGTGCGGACACTGAGCCGAC
* * *
34406312 TGAAGAGGCATAATGCGCAAGCCAGGGATCGACCCGATCCCCCTCTTCATGCTGTCG
258 TGAAGAGGCATAATGCGCAAGCCAGGGACCGACCCGATCCCCCTCTACATGCTGTCA
* * ** * * * *
34406369 GTCCCGCTGCC-CAACCCTCAG-TCCAACTAGTGCTTAGACATGGAATGAACTGCCTATGCCTAA
1 GTCCTGCTGCCACAAACCTCAGTTCGGA-TGGGGCTTAGACATGGAATGAACTCCCTAAGCCTAA
* * * * * * *
34406432 GCCAATCCACGAAACAGACGTGCGGGTGCTTAGTCAGTCGGGGAGGCAAAATGCGTAAGCTGAGG
65 GCCAACCCACGAAACGGGCGTGCGGGCGCTCAG-CAGCCGGAGAGGCAAAATGCGTAAGC-GAGG
* * *
34406497 ATCGGCTCGGTCCCCACTACGTGCTG-CTGATCCTTCTGCCGCCACCCTCGGTCTGGTCTGATCT
128 ATCGGCTCGGTCCCC-CTACGTGCTGTC-GATCCTACTGCCGCAACCCTCGGTCCGGTCTGATCT
* *
34406561 TAGAATGGGAATGAACTCCTTATGC
191 TAGACTGGGAATGAACTCCGTATGC
34406586 TTACACTGGG
Statistics
Matches: 442, Mismatches: 79, Indels: 27
0.81 0.14 0.05
Matches are distributed among these distances:
315 8 0.02
316 165 0.37
317 259 0.59
318 10 0.02
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (314 bp):
GTCCTGCTGCCACAAACCTCAGTTCGGATGGGGCTTAGACATGGAATGAACTCCCTAAGCCTAAG
CCAACCCACGAAACGGGCGTGCGGGCGCTCAGCAGCCGGAGAGGCAAAATGCGTAAGCGAGGATC
GGCTCGGTCCCCCTACGTGCTGTCGATCCTACTGCCGCAACCCTCGGTCCGGTCTGATCTTAGAC
TGGGAATGAACTCCGTATGCATAAGTCAACCCACAAAACGAACGTGCGGACACTGAGCCGACTGA
AGAGGCATAATGCGCAAGCCAGGGACCGACCCGATCCCCCTCTACATGCTGTCA
Found at i:34406341 original size:158 final size:158
Alignment explanation
Indices: 34405768--34406585 Score: 557
Period size: 158 Copynumber: 5.2 Consensus size: 158
34405758 CCGGTTGGGG
* * * * * *
34405768 CTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCAACGAAATGAGCGTGCGGGCACTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAACGTGCGGGCACTCAGC
* * * * * * *
34405833 CGGCCGGAGAGGCATAATGCGCAAGCCGGGGTTCGACCCGGTCCCCCCTATGTGCTGTCGATCCT
66 CGACCGAAGAGGCATAATGCGCAAGCCGAGGATCGACCCGATCCCCCCTACGTGTTGTCGATCCT
* * *
34405898 ACTACAGCAACCCTCGGTCCGGTCTAAT
131 ACTGCCGCAACCCTCGGTCCGGTCTGAT
* * * * * *
34405926 CTGAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACAAAAC-AAGCGTGCGGACGCTGA
1 CTTAGACAT-GGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAA-CGTGCGGGCACTCA
* * * * * * * *
34405989 GCCGATCGAAGAGGTATAATGCGCAAGCTGAGGACCGGCTCGGTCCCCCTCTACGTGTTG-CTAG
64 GCCGACCGAAGAGGCATAATGCGCAAGCCGAGGATCGACCCGATCCCCC-CTACGTGTTGTCGA-
* * * * * * **
34406053 TCCTGCTGCCACAAACCTCAGTTCGGAT-GGGG
127 TCCTACTGCCGCAACCCTCGGTCCGG-TCTGAT
* * * * * ** *
34406085 CCTAGACATGGAATGAACTCCCTAAGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAACGTGCGGGCACTCAGC
* * * * * * * * * *
34406150 TGCCCGAAGAGGTAGAATGCGTAAGTCGAGGATCGGCTCGATCTCCCCTGCGTGTTGTCGATCCT
66 CGACCGAAGAGGCATAATGCGCAAGCCGAGGATCGACCCGATCCCCCCTACGTGTTGTCGATCCT
* *
34406215 ACTGCCGTAACCCTCGGTCCAGTCTGAT
131 ACTGCCGCAACCCTCGGTCCGGTCTGAT
* * * * *
34406243 CTTAGAC-TGGGAATGAACTCTGTATGCATAAGTCAACCCATGGAACGAACGTGCGGGCACTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAACGTGCGGGCACTCAG
* * * * *
34406307 CCGACTGAAGAGGCATAATGCGCAAGCC-AGGGATCGACCCGATCCCCCTCTTCATGCTGTCGGT
65 CCGACCGAAGAGGCATAATGCGCAAGCCGA-GGATCGACCCGATCCCCC-CTACGTGTTGTCGAT
** * **
34406371 CCCGCTGCC-CAACCCTCAGTCC-AACT-AGT
128 CCTACTGCCGCAACCCTCGGTCCGGTCTGA-T
* * ** *
34406400 GCTTAGACATGGAATGAACTGCC-TATGCCTAAGCCAATCCACGAAAC-AGACGTGCGGGTGCTT
1 -CTTAGACATGGAATGAACT-CCGTATGCATAAGCCAACCCACGAAACGA-ACGTGCGGGCACTC
* * ** * * * * * * * *
34406463 AGTC-AGTCGGGGAGGCAAAATGCGTAAGCTGAGGATCGGCTCGGTCCCCACTACGTGCTG-CTG
63 AGCCGA-CCGAAGAGGCATAATGCGCAAGCCGAGGATCGACCCGATCCCCCCTACGTGTTGTC-G
* * *
34406526 ATCCTTCTGCCGCCACCCTCGGTCTGGTCTGAT
126 ATCCTACTGCCGCAACCCTCGGTCCGGTCTGAT
*
34406559 CTTAGA-ATGGGAATGAACTCCTTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
34406586 TTACACTGGG
Statistics
Matches: 503, Mismatches: 132, Indels: 50
0.73 0.19 0.07
Matches are distributed among these distances:
156 2 0.00
157 31 0.06
158 327 0.65
159 140 0.28
160 3 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAACGTGCGGGCACTCAGC
CGACCGAAGAGGCATAATGCGCAAGCCGAGGATCGACCCGATCCCCCCTACGTGTTGTCGATCCT
ACTGCCGCAACCCTCGGTCCGGTCTGAT
Found at i:34406929 original size:342 final size:342
Alignment explanation
Indices: 34406302--34406972 Score: 787
Period size: 342 Copynumber: 2.0 Consensus size: 342
34406292 CGTGCGGGCA
* * **
34406302 CTGAGCCGACTGAAGAGGCATAATGCGCAAGCCAGGGATCGACCCGATCCCCCTCTTCATGCTGT
1 CTGAGCCGACCGAAGAGGCATAATGCGCAAGCCAGGGATCGACCCGATCCCCCTCTGCATGCTAC
* * *
34406367 CGGTCCCGCTGCCCAACCCTCAGTCCAACTAGTGCTTAGACATGGAATGAACTGCCTATGCCTAA
66 CGGTCCCGCTGCCCAACCCTCAGTCCAACTAGGGCTTAGACATGGAATGAACTCCCTATACCTAA
* ** * * * * **
34406432 GCCAATCCACGAAACAGACGTGCGGGTGCTTAGTCAGTCGGGGAGGCAAAATGCGTAAGCTGAGG
131 GCCAATCCACGAAACAGACGAGCGGGCACTCAGCCAGCCGGAGAGGCAAAATGCACAAGCTGAGG
* * * * * *
34406497 ATCGGCTCGGTCCCCACTACGTGCTGCTGATCCTTCTGCCGCCACCCTCGGTCTGGTCTGATCTT
196 ATCGACTCGATCCCCACTACGTGCTACCGATCCTACTGCCGCAACCCTCGGTCTGGTCTGATCTT
* * *
34406562 AGAATGGGAATGAACTCCTTATGCTTACACT-GGGATAAACTCCGTATGCCTAAGTAAACCCATG
261 AGAATAGGAATGAACTCCTTATGCTTACACTGGGGATAAACTCCATACGCCTAAGTAAACCCATG
34406626 AAACAAGCATACAGGTG
326 AAACAAGCATACAGGTG
* * * * * *
34406643 CTGAGCCGACCGAAGGGGCATAATGTGCAAGTC-GAGGATCGGCCC-AGTCCCTCTCTGCGTGCT
1 CTGAGCCGACCGAAGAGGCATAATGCGCAAGCCAG-GGATCGACCCGA-TCCCCCTCTGCATGCT
** ** *
34406706 ACCGGTCTTGCTGCCACAACCCTCAGTCTGACTGGGGCTTAGACATGGAATGAACTCCCTATACC
64 ACCGGTCCCGCTGCC-CAACCCTCAGTCCAACTAGGGCTTAGACATGGAATGAACTCCCTATACC
* * * * *
34406771 TAAGCCAA-CCGATGAAACGGGCGAGTGGGCACTCAGCCAGCCGGAGAGGCAGAATGCACAAG-T
128 TAAGCCAATCC-ACGAAACAGACGAGCGGGCACTCAGCCAGCCGGAGAGGCAAAATGCACAAGCT
* * * * *
34406834 CGGGGATCGATTCGATCCCCCCTGCGTGCTACCGATCCTACTGCTGCAACCCTCGGTCTGGTCTG
192 -GAGGATCGACTCGATCCCCACTACGTGCTACCGATCCTACTGCCGCAACCCTCGGTCTGGTCTG
* * * * *
34406899 ATCTTAGACTAGGAATGAACT-CTGTATGCTTAGACTGGGGATGAACTTCATACGCCTAAGTCAA
256 ATCTTAGAATAGGAATGAACTCCT-TATGCTTACACTGGGGATAAACTCCATACGCCTAAGTAAA
34406963 CCCATGAAAC
320 CCCATGAAAC
34406973 GTGCGTGCGG
Statistics
Matches: 272, Mismatches: 51, Indels: 12
0.81 0.15 0.04
Matches are distributed among these distances:
340 2 0.01
341 67 0.25
342 171 0.63
343 32 0.12
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (342 bp):
CTGAGCCGACCGAAGAGGCATAATGCGCAAGCCAGGGATCGACCCGATCCCCCTCTGCATGCTAC
CGGTCCCGCTGCCCAACCCTCAGTCCAACTAGGGCTTAGACATGGAATGAACTCCCTATACCTAA
GCCAATCCACGAAACAGACGAGCGGGCACTCAGCCAGCCGGAGAGGCAAAATGCACAAGCTGAGG
ATCGACTCGATCCCCACTACGTGCTACCGATCCTACTGCCGCAACCCTCGGTCTGGTCTGATCTT
AGAATAGGAATGAACTCCTTATGCTTACACTGGGGATAAACTCCATACGCCTAAGTAAACCCATG
AAACAAGCATACAGGTG
Found at i:34409432 original size:26 final size:26
Alignment explanation
Indices: 34409395--34409446 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34409385 GCTCAAAATG
34409395 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
34409421 TTAGACAT-GGAATGAACTCCGTATGC
1 TTAGAC-TGGGAATGAACTCCGTATGC
34409447 CTAAGCTAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:34410079 original size:159 final size:158
Alignment explanation
Indices: 34409916--34410258 Score: 354
Period size: 159 Copynumber: 2.2 Consensus size: 158
34409906 CTGCTATCGT
* * *
34409916 AACCCTCGGTCTGGTCTGATCTTAGAC-TGAGAAGGAACTTCGTATGCATAAGTCAACCCACGAA
1 AACCCTCGGTCTGGTCTGATCTTAGACATG-GAAGGAACTCCCTATGCATAAGCCAACCCACGAA
* * * * *
34409980 ATGAGCGTGCGGGCACTGAGCCCGCCGAAGAGGCATAAT-CTGCAAGCTGGGGATTGGCCCTG-T
65 ACGAGCGTGCGGGCACTCAGCCCGCCGAAGAGGCAGAATGC-GCAAGCCGGGGATGGGCCC-GAT
* *
34410043 CCCCCTCTGCGTGTTATCGGTCCCACTGCCAC
128 CCCCC-CTGCGTGCTATCGATCCCACTGCCAC
* * ** * *
34410075 AACCCTTGGT-TCAG-CTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGA
1 AACCCTCGGTCT-GGTCT-GATCTTAGACATGGAAGGAACTCCCTATGCATAAGCCAACCCACGA
* ** * *
34410138 AACGAGCGTGCGGGCGCTCAGCTGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATGGGCTCGATC
64 AACGAGCGTGCGGGCACTCAGCCCGCCGAAGAGGCAGAATGCGCAAGCCGGGGATGGGCCCGATC
* * **
34410203 CCCCCTGCGTGCTGTCGATCCTACTGCCGT
129 CCCCCTGCGTGCTATCGATCCCACTGCCAC
* *
34410233 AACCCTCAGTCCGGTCTGATCTTAGA
1 AACCCTCGGTCTGGTCTGATCTTAGA
34410259 TTGGGAATGA
Statistics
Matches: 146, Mismatches: 31, Indels: 15
0.76 0.16 0.08
Matches are distributed among these distances:
158 40 0.27
159 103 0.71
160 3 0.02
ACGTcount: A:0.21, C:0.30, G:0.28, T:0.20
Consensus pattern (158 bp):
AACCCTCGGTCTGGTCTGATCTTAGACATGGAAGGAACTCCCTATGCATAAGCCAACCCACGAAA
CGAGCGTGCGGGCACTCAGCCCGCCGAAGAGGCAGAATGCGCAAGCCGGGGATGGGCCCGATCCC
CCCTGCGTGCTATCGATCCCACTGCCAC
Found at i:34410698 original size:26 final size:26
Alignment explanation
Indices: 34410621--34410699 Score: 124
Period size: 26 Copynumber: 3.0 Consensus size: 26
34410611 CCGGTCCAAT
* *
34410621 CTTAGAC-TGGGAATGAACTCTGTATC
1 CTTAGACAT-GGAATGAACTCCGTATG
34410647 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
34410673 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
34410699 C
1 C
34410700 CTAAGCCAAC
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
26 49 0.98
27 1 0.02
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:34411125 original size:158 final size:158
Alignment explanation
Indices: 34410672--34411134 Score: 445
Period size: 158 Copynumber: 2.9 Consensus size: 158
34410662 AACTCCGTAT
* * * *
34410672 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGGGTGTGCGGGTGCTCAG
* * *
34410737 TCAGCCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCTCGATCCCCCCCTGCGTGCTATCGATC
66 TCAGCCGAAGAGGCAGAATGCGCAAGTCGGGGATCGGCTCGGT-CCCTCCTGCGTGCTATCGATC
* * * ** *
34410802 CTGCTGCCGCAACCTTCGGTCCGGTTTGA
130 CAGCTGCCGCAACCCTCAGTCCGACTGGA
* * * ** * *
34410831 TCTTAGAC-TGGGAATAAACTTCATATGAATAAGTCAACCCATGAAAC-GATCGTGC-GGTCGCT
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGGGT-GTGCGGGT-GCT
* ** * * * *
34410893 GAG-CAGCAAAAGAGGCATAATGCGCAAG-CTGGGGATCGGCTCGGTCCCTCTTTGCATGCTGTC
63 CAGTCAGCCGAAGAGGCAGAATGCGCAAGTC-GGGGATCGGCTCGGTCCCTC-CTGCGTGCTATC
* *
34410956 GGTCCCA-CTGCCGCAACCCTCAGTCCGACTGGG
126 GAT-CCAGCTGCCGCAACCCTCAGTCCGACTGGA
* *
34410989 GCTTAGACATGGAATGAACTCCCTATGCCTAAACCAACCCATGAAACGGGTGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGGGTGTGCGGGTGCTCAG
* * ** * * * *
34411054 TC-GACCGAAGAGGTAGAATGCACAAGTCGAAGATTGGCCCGGTCCTTCCTACGTGCTATCGATC
66 TCAG-CCGAAGAGGCAGAATGCGCAAGTCGGGGATCGGCTCGGTCCCTCCTGCGTGCTATCGATC
*
34411118 CAGCTGCCGCAATCCTC
130 CAGCTGCCGCAACCCTC
34411135 GATCCGGTTT
Statistics
Matches: 236, Mismatches: 55, Indels: 27
0.74 0.17 0.08
Matches are distributed among these distances:
157 8 0.03
158 140 0.59
159 87 0.37
160 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.21
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGGGTGTGCGGGTGCTCAG
TCAGCCGAAGAGGCAGAATGCGCAAGTCGGGGATCGGCTCGGTCCCTCCTGCGTGCTATCGATCC
AGCTGCCGCAACCCTCAGTCCGACTGGA
Found at i:34411183 original size:26 final size:26
Alignment explanation
Indices: 34411147--34411198 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
34411137 TCCGGTTTGA
*
34411147 TCTTACACTGGGAATGAACTCTGTAT
1 TCTTACACTGGGAATGAACTCCGTAT
* *
34411173 TCTTAGACTGGGGATGAACTCCGTAT
1 TCTTACACTGGGAATGAACTCCGTAT
34411199 GCCTAAGTCA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.19, G:0.23, T:0.33
Consensus pattern (26 bp):
TCTTACACTGGGAATGAACTCCGTAT
Found at i:34412289 original size:159 final size:157
Alignment explanation
Indices: 34411893--34412394 Score: 463
Period size: 158 Copynumber: 3.2 Consensus size: 157
34411883 AACTCCGCTT
* * *
34411893 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGATCGTACGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAG
* ** * * *
34411958 CCAGTCGGAGAGGCAGAATGCGCAAGCGGGGGATCGACCC-AGTCCCCCCTGCGTTCTGTCGATC
66 CCGGTC-GAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGA-TCCCCCCTACGTGCTGTCGATC
* * *
34412022 CTGCTACCGCAACCCTCGGTCCGGTCTGA
129 CCGCTACCACAACCCTCGGTCCGATCTGA
* * * * * * *
34412051 TCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCAGGCGCTAA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCA
* * * *
34412115 GCCGGTCGAAAAGGCATAATGCGCAAGCCAGGGATCGGCCCGATCACCCTCTACGTGCTGTCGGT
65 GCCGGTCG-AGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATC-CCCCCTACGTGCTGTCGAT
* * *
34412180 CCCGTTGCCACAACCCTCGGTCCGAT-TGGG
128 CCCGCTACCACAACCCTCGGTCCGATCT-GA
* * * * * *
34412210 GCTTAGACATGGAAAGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTATGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAG
* * ** * * * ** *
34412275 TCGGCCAGAGAGGCAGAATGCATAAGCCAGGGATCTGCCCGATGCCCCCTCCGTGCTACCGATCT
66 CCGGTC-GAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCCCTACGTGCTGTCGATCC
* ** * *
34412340 TGCTGTCACAACCCTCGGTCCAATCCGA
130 CGCTACCACAACCCTCGGTCCGATCTGA
* *
34412368 TCTTAGAC-TGGGAATGAACTCCATATG
1 GCTTAGACAT-GGAATGAACTCCGTATG
34412395 ATTAGACTGG
Statistics
Matches: 273, Mismatches: 62, Indels: 18
0.77 0.18 0.05
Matches are distributed among these distances:
157 3 0.01
158 146 0.53
159 122 0.45
160 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAG
CCGGTCGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCCCTACGTGCTGTCGATCCC
GCTACCACAACCCTCGGTCCGATCTGA
Found at i:34413471 original size:26 final size:26
Alignment explanation
Indices: 34413442--34413494 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
34413432 CCGGTCTGAT
34413442 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* * *
34413468 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
34413494 C
1 C
34413495 CAAGTCAACC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:34414683 original size:26 final size:26
Alignment explanation
Indices: 34414654--34414706 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34414644 ACGGTCCGAT
34414654 CTTAGACT-GGGAAAGAACTCCGTATG
1 CTTAGACTAGGG-AAGAACTCCGTATG
*
34414680 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGAAGAACTCCGTATG
34414706 C
1 C
34414707 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTAGGGAAGAACTCCGTATG
Found at i:34415913 original size:26 final size:26
Alignment explanation
Indices: 34415875--34415927 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34415865 GGCTCAAAAT
*
34415875 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
34415901 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
34415927 C
1 C
34415928 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:34416741 original size:159 final size:158
Alignment explanation
Indices: 34416402--34416890 Score: 419
Period size: 158 Copynumber: 3.1 Consensus size: 158
34416392 ATATGCTCTG
* * * ** *
34416402 ACTGGGGATGAACTCCGTATGCCTCAGTCAACCCATGGAACAAGCGTACAGGCACTCAGCTAGCC
1 ACTGGGAATGAACTCCATATGCCTAAGTCAACCCATAAAACAAGCGTACAGGCACTCAGCCAGCC
* *
34416467 GGAGAGGCAGAATGCGTAAGCTGGGGACCGGCCCGATCCCCCCTGCGTGCTATCGATCCTGCTAC
66 GGAGAGGCAGAATACGCAAGCTGGGGACCGGCCCGATCCCCCCTGCGTGCTATCGATCCTGCTAC
* * *
34416532 CGCAACCCTCAGTCCAGTCTGATCTTAC
131 CACAACCCTCAGTCCAGGCTGAGCTTAC
* * * ** *
34416560 ACTGGGAATGAACTCCATATGCCTAAGTCAACCCATAAAACGAGTGTACGGGCGTTGAGCCAGCC
1 ACTGGGAATGAACTCCATATGCCTAAGTCAACCCATAAAACAAGCGTACAGGCACTCAGCCAGCC
* * * * * *
34416625 TGAGAGGCATAATACGCAAGCTGGGGATCGGCTCGGTCCCCCTCTGCGTGCTGTCGATGCC-GCT
66 GGAGAGGCAGAATACGCAAGCTGGGGACCGGCCCGATCCCCC-CTGCGTGCTATCGAT-CCTGCT
* * * *
34416689 GCCACAACCCTCGGT-CTGGCTGGAGCTTAG
129 ACCACAACCCTCAGTCCAGGCT-GAGCTTAC
* * * * ** * * ** * *
34416719 ACAT-GGAATGAACTCCTTATGCCTAAGCCAACCCATGAATCGGGCGTGCGGGTGCTCAGCCGGT
1 AC-TGGGAATGAACTCCATATGCCTAAGTCAACCCATAAAACAAGCGTACAGGCACTCAGCCAGC
** * * * * * * * *
34416783 CAAAGAGGTAGAATGCACAAGCCGAGGATCGGCCTGATCCCCCTTGCGTGCTATCGATCCTGCTA
65 CGGAGAGGCAGAATACGCAAGCTGGGGACCGGCCCGATCCCCCCTGCGTGCTATCGATCCTGCTA
* * * * *
34416848 TCGCAACCCTCGGTCC-GGTCTGATCTTAG
130 CCACAACCCTCAGTCCAGG-CTGAGCTTAC
34416877 ACTGGGAATGAACT
1 ACTGGGAATGAACT
34416891 TGTATGCTTA
Statistics
Matches: 267, Mismatches: 56, Indels: 16
0.79 0.17 0.05
Matches are distributed among these distances:
157 3 0.01
158 141 0.53
159 120 0.45
160 3 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (158 bp):
ACTGGGAATGAACTCCATATGCCTAAGTCAACCCATAAAACAAGCGTACAGGCACTCAGCCAGCC
GGAGAGGCAGAATACGCAAGCTGGGGACCGGCCCGATCCCCCCTGCGTGCTATCGATCCTGCTAC
CACAACCCTCAGTCCAGGCTGAGCTTAC
Found at i:34416814 original size:501 final size:495
Alignment explanation
Indices: 34415873--34416948 Score: 1326
Period size: 501 Copynumber: 2.2 Consensus size: 495
34415863 GTGGCTCAAA
* * * *
34415873 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAA
1 ATCTTAGACTGGGAATGAACTTCGTATGCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAA
* * * * * * *
34415937 CCCACGAAACAAGCGTGCGGGCGCTCAGTCGGTCGAAGAGGTAGAATGCGCAAGCTGGGACCCAG
65 CCCATGAAACAAGCGTACAGGCACTCAGTCAGCCGAAGAGGCAGAATGCGCAAGCTGGGACCCAG
* * * * * *
34416002 TCCCCCCTGCGTGCTGTCGATCCTATTGCCGTAACCCTCAGTCCAGTCTGATCTTAGATTGCGAA
130 TCCCCCCTGCGTGCTATCGATCCTACTACCGCAACCCTCAGTCCAGTCTGATCTTACACTGCGAA
* *
34416067 TGAACTACATATGCATAAGTCAACCCATGAAATGAGCGTACGGGCGTTGAGCCGACCGAAGAGCC
195 TGAACTACATATGCATAAGTCAACCCATAAAACGAGCGTACGGGCGTTGAGCCGACCGAAGAGCC
*
34416132 ATAATGCGCAAGCCAAGGATCGGCCCGATCCCCCTCTGCATGCCGCCAGTCCCGCTACCACAACC
260 ATAATACGCAAGCCAAGGATCGGCCCGATCCCCCTCTGCATGCCGCCAGTCCCGCTACCACAACC
*
34416197 CTCGGTCCGGCTGGGGCCTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACAGC
325 CTCGGTCCGGCTGGAGCCTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACAGC
* ** ** * *
34416262 CGTGCGGGCGCTCAGTCAACCGGAGAGGCTAAATGCACAAGTTGGGGATCGGCCCGGTCCCTCCT
390 CGTGCGGGCGCTCAGCCAACCAAAGAGGCTAAATGCACAAGCCGAGGATCGGCCCGATCCC-CCT
* * *
34416327 AT-GTGCTGTCAATCCTGCT-GCTGCAACCCTTGGTCCGGTCTG
454 -TCGTGCTATCAATCCTGCTATC-GCAACCCTCGGTCCGGTCTG
* *
34416369 ATCTTAGACTGGGAATGAACTTCATATGCTCT-GACTGGGGATGAACTCCGTATGCCTCAGTCAA
1 ATCTTAGACTGGGAATGAACTTCGTATGCT-TAGACTGGGGATGAACTCCGTATGCCTAAGTCAA
* * *
34416433 CCCATGGAACAAGCGTACAGGCACTCAG-CTAGCCGGAGAGGCAGAATGCGTAAGCTGGGGACCG
65 CCCATGAAACAAGCGTACAGGCACTCAGTC-AGCCGAAGAGGCAGAATGCGCAAGCT-GGGA-C-
* *
34416497 GCCCGATCCCCCCTGCGTGCTATCGATCCTGCTACCGCAACCCTCAGTCCAGTCTGATCTTACAC
126 -CCAG-TCCCCCCTGCGTGCTATCGATCCTACTACCGCAACCCTCAGTCCAGTCTGATCTTACAC
* * * *
34416562 TGGGAATGAACTCCATATGCCTAAGTCAACCCATAAAACGAGTGTACGGGCGTTGAGCC-AGCCT
189 TGCGAATGAACTACATATGCATAAGTCAACCCATAAAACGAGCGTACGGGCGTTGAGCCGA-CC-
* *** * * * * * *
34416626 G-AGAGGCATAATACGCAAGCTGGGGATCGGCTCGGTCCCCCTCTGCGTGCTGTC-GATGCCGCT
252 GAAGAGCCATAATACGCAAGCCAAGGATCGGCCCGATCCCCCTCTGCATGCCGCCAG-TCCCGCT
* * * *
34416689 GCCACAACCCTCGGTCTGGCTGGAGCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCA
316 ACCACAACCCTCGGTCCGGCTGGAGCCTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCA
* * * * * *** *
34416754 TGAATCGGGCGTGCGGGTGCTCAGCCGGTCAAAGAGG-TAGAATGCACAAGCCGAGGATCGGCCT
381 CGAAACAGCCGTGCGGGCGCTCAGCCAACCAAAGAGGCTA-AATGCACAAGCCGAGGATCGGCCC
*
34416818 GATCCCCCTTGCGTGCTATCGATCCTGCTATCGCAACCCTCGGTCCGGTCTG
445 GATCCCCCTT-CGTGCTATCAATCCTGCTATCGCAACCCTCGGTCCGGTCTG
*
34416870 ATCTTAGACTGGGAATGAACTT-GTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAATCAAC
1 ATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAAC
*
34416934 CCATGAAACGAGCGT
66 CCATGAAACAAGCGT
34416949 GTGAGCGCTC
Statistics
Matches: 493, Mismatches: 71, Indels: 28
0.83 0.12 0.05
Matches are distributed among these distances:
495 2 0.00
496 98 0.20
497 5 0.01
498 1 0.00
499 2 0.00
500 60 0.12
501 323 0.66
502 2 0.00
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (495 bp):
ATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAAC
CCATGAAACAAGCGTACAGGCACTCAGTCAGCCGAAGAGGCAGAATGCGCAAGCTGGGACCCAGT
CCCCCCTGCGTGCTATCGATCCTACTACCGCAACCCTCAGTCCAGTCTGATCTTACACTGCGAAT
GAACTACATATGCATAAGTCAACCCATAAAACGAGCGTACGGGCGTTGAGCCGACCGAAGAGCCA
TAATACGCAAGCCAAGGATCGGCCCGATCCCCCTCTGCATGCCGCCAGTCCCGCTACCACAACCC
TCGGTCCGGCTGGAGCCTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACAGCC
GTGCGGGCGCTCAGCCAACCAAAGAGGCTAAATGCACAAGCCGAGGATCGGCCCGATCCCCCTTC
GTGCTATCAATCCTGCTATCGCAACCCTCGGTCCGGTCTG
Found at i:34416921 original size:26 final size:25
Alignment explanation
Indices: 34416872--34416923 Score: 77
Period size: 25 Copynumber: 2.0 Consensus size: 25
34416862 CCGGTCTGAT
*
34416872 CTTAGACTGGGAATGAACTTGTATG
1 CTTAGACTGGGAATGAACTCGTATG
*
34416897 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACT-CGTATG
34416923 C
1 C
34416924 CTAAATCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 18 0.75
26 6 0.25
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (25 bp):
CTTAGACTGGGAATGAACTCGTATG
Found at i:34417621 original size:26 final size:26
Alignment explanation
Indices: 34417583--34417633 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
34417573 GGCTCAAAAT
*
34417583 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
34417609 CTTAGACAT-GGAATGAACTCCGTAT
1 CTTAGAC-TGGGAATGAACTCCGTAT
34417634 ACCTAAGCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34419776 original size:159 final size:158
Alignment explanation
Indices: 34419412--34419828 Score: 437
Period size: 159 Copynumber: 2.6 Consensus size: 158
34419402 AACTCTGTAT
* * * *
34419412 GCTTAGGCATGGAATTAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAG
* * * * * *
34419477 TCGGCCGAAG-GTGTAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCCACGTGCTGTCGATC
66 CCGACCGAAGAG-GCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCCCCACATGCTGTCAATC
* **
34419541 CTGCTACCACAACCCTCAGTCTGGTCTGA
130 CCGCTACCACAACCCTCAGTCCAGTCTGA
* * * * *
34419570 TCTTAGAC-TGGGAATGAACTCCATATGCATAAGTCAACCCACAAAACGAGCGTGCGAGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCA
* * * **
34419634 GCCGACCGAAGAGGCATAATGCGCAAGCTAGGGATCGGCCTGATCCCCCTCTGCATGCTG-CAAG
65 GCCGACCGAAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCC-CCACATGCTGTCAA-
* * * *
34419698 TCCCGTTGCCACAACCCTCGGTCCAGT-TAGG
128 TCCCGCTACCACAACCCTCAGTCCAGTCT-GA
* * * * *
34419729 GCTTAGACATGGAATGAACTCCCTATGCCTAAACCAACCCACTAAACGGGCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAG
* ** *
34419794 CCGACCGGAGAGGCAGAATATGCAAGCCGGGGATC
66 CCGACCGAAGAGGCAGAATGCGCAAGCCAGGGATC
34419829 AGTACGGTCC
Statistics
Matches: 210, Mismatches: 43, Indels: 11
0.80 0.16 0.04
Matches are distributed among these distances:
157 1 0.00
158 96 0.46
159 112 0.53
160 1 0.00
ACGTcount: A:0.25, C:0.31, G:0.27, T:0.17
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAG
CCGACCGAAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCCCCACATGCTGTCAATCC
CGCTACCACAACCCTCAGTCCAGTCTGA
Found at i:34422379 original size:26 final size:26
Alignment explanation
Indices: 34422343--34422395 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34422333 CCGATCTAAT
*
34422343 CTTAGGCTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
34422369 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
34422395 C
1 C
34422396 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:34423259 original size:524 final size:511
Alignment explanation
Indices: 34422037--34423466 Score: 1476
Period size: 524 Copynumber: 2.8 Consensus size: 511
34422027 CTTACATTGG
** * ** * * * ** *
34422037 GAATGAACTCTGTATGCATAAGTCAACCCACGAAACGAGTGTACAGGTGCTGAGCCAGA-TAAAG
1 GAATGAACTCCATATGCCTAAACCAACCCACAAAACGAGCGTGCAGGCACTGAG-CAGACCAAAG
** * * ** * * * * *
34422101 AGGCATAATGTGCAAGCCAGGGATCAGCCTGATCCCCCTTTGCGTGCTGTC-GATCCCACTACCA
65 AGGCATAA-GCACAAGCCGGGGATCGGCCTGGCCCCCCTCTACGTGCTGCCAG-TCCCTCTGCCA
* * * *
34422165 CAACCCTCGATCCGACTGGGGCTTACACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAA
128 CAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAA
* ** * *
34422230 ATGGGCGTGCGGGCGCTCAGTCAGC-TAGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATC
193 ATGGGCGTACGGGCGCTCAGTCAGCGTA-A-AGGCAGAATGCGCAAGCTGGGGATCGACCCGGTC
* * * *
34422294 CCCCCTGCGTGCTATCGATCCTGCTGT-GCAACCCTCGATCCGATCTAATCTTAGGCTGGGAATG
256 CCCCTTGCGTGCTATCGATCCTGCTGTCGCAACCCTCGATCAG-TCTGATCTTAGACTGGGAATG
* * * *
34422358 AACTCTGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCAAGAAATGAGTGTAC
320 AACTCCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTAC
* ** * * *** * * * * *
34422423 GGGCGCTCAACTGACCGGAGAGGCATAATACGTAAGCTGGGGATCAGCCTGGTCCCTCTCTACGT
385 GGGCGCCCAACCAACCGAAGAGGCATAATACGCAAGCCAAGAATCAACCCGATCACTCTCTACGT
* *
34422488 GCTGCTGAGCCCGCTGCTGGTCCTGCTACCACAACCCTCGGTCCAGCTGGGGCTTAGACATG
450 GCTGCTGAGCCCGCTGCTGGTCCTACTACCACAACCCTCGGTCCAGCTGGGGCTTAGACATA
* * ** * ***
34422550 GAATTAACTCCATATGCCTAAATCAACCCATGAAACGAGCGTGCAGGCACTGAGCCGACTGGAGA
1 GAATGAACTCCATATGCCTAAACCAACCCACAAAACGAGCGTGCAGGCACTGAGCAGACCAAAGA
* * *
34422615 GGCATAATGCACAAGCCGGGGATCGGCCTGGCCCCCCTCTGCGTGCTGCCGGTCGCTCTGCCACA
66 GGCATAA-GCACAAGCCGGGGATCGGCCTGGCCCCCCTCTACGTGCTGCCAGTCCCTCTGCCACA
* * **
34422680 ACCCTCGGT-TCGGTTGGGGCTTAGACATGGAATGAACTCCTTATTTCTAAGCCAACCCATGAAA
130 ACCCTCGGTCT-GGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAA
* * *
34422744 TGGGCGTACGGGCGCTCAGTCGATCGTAAAGGCAGAATGCGTAAGCTGGGGATCGACTCGGTCCC
194 TGGGCGTACGGGCGCTCAGTC-AGCGTAAAGGCAGAATGCGCAAGCTGGGGATCGACCCGGTCCC
* * * ** * * *
34422809 TCTTACATGCTGCCAATCTTGCTGTCGCGACCCTCGATCTAGTCTGATCTTAGACTGGGAATGAA
258 CCTTGCGTGCTATCGATCCTGCTGTCGCAACCCTCGATC-AGTCTGATCTTAGACTGGGAATGAA
** **
34422874 CTCCGTGGGCTTAGACTGGGGACAAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTACGG
322 CTCCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTACGG
**
34422939 GCACTTAGTCGACCGAAGAGGCCAACCGAAGAGGCATAATGTGCAAGCCAAGAATCAACCCGATC
387 G--C---G-C--CC--A-A--CCAACCGAAGAGGCATAATACGCAAGCCAAGAATCAACCCGATC
* * ** * * * *
34423004 ACTCTCTGCGTGCTGCTGATCTTGCTG-TCGGTCCTACTGCCACAACCTTCGGTCCAGTTGTGGC
439 ACTCTCTACGTGCTGCTGAGCCCGCTGCT-GGTCCTACTACCACAACCCTCGGTCCAGCTGGGGC
34423068 TTAGACATA
503 TTAGACATA
* * * * * * *
34423077 GAATGAACTTCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGTACTGAGTAGGCCAAAGA
1 GAATGAACTCCATATGCCTAAACCAACCCACAAAACGAGCGTGCAGGCACTGAGCAGACCAAAGA
* *
34423142 GGCAT-A-CGCAAGCTGGGGATCGGCCTGGCCCCCCTCTACGTGCTGCCAGTCCCTCTGCCACAA
66 GGCATAAGCACAAGCCGGGGATCGGCCTGGCCCCCCTCTACGTGCTGCCAGTCCCTCTGCCACAA
* *
34423205 CCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCAACGAAATG
131 CCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATG
* * * * *
34423270 GGCCTACGGGCGCTCAGCCAGCTGGAGAGGCAGAATGTGCAAG-TCGGGGATCGACCCGGTCCCC
196 GGCGTACGGGCGCTCAGTCAGC-GTAAAGGCAGAATGCGCAAGCT-GGGGATCGACCCGGTCCCC
* * * * *
34423334 CTTGCGTGCTATCGATCCTACTGCCGTAAGCCTC-AGTCCGGTCTGATCTTAGACTGGGAATGAA
259 CTTGCGTGCTATCGATCCTGCTGTCGCAACCCTCGA-T-CAGTCTGATCTTAGACTGGGAATGAA
* * *
34423398 CTCCTTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGA
322 CTCCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTACGG
34423463 GCGC
387 GCGC
34423467 TCAGCCGACC
Statistics
Matches: 752, Mismatches: 139, Indels: 47
0.80 0.15 0.05
Matches are distributed among these distances:
512 3 0.00
513 222 0.30
514 95 0.13
515 3 0.00
516 1 0.00
518 1 0.00
519 2 0.00
520 1 0.00
522 2 0.00
523 4 0.01
524 267 0.36
525 3 0.00
526 2 0.00
527 146 0.19
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.21
Consensus pattern (511 bp):
GAATGAACTCCATATGCCTAAACCAACCCACAAAACGAGCGTGCAGGCACTGAGCAGACCAAAGA
GGCATAAGCACAAGCCGGGGATCGGCCTGGCCCCCCTCTACGTGCTGCCAGTCCCTCTGCCACAA
CCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATG
GGCGTACGGGCGCTCAGTCAGCGTAAAGGCAGAATGCGCAAGCTGGGGATCGACCCGGTCCCCCT
TGCGTGCTATCGATCCTGCTGTCGCAACCCTCGATCAGTCTGATCTTAGACTGGGAATGAACTCC
GTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCGC
CCAACCAACCGAAGAGGCATAATACGCAAGCCAAGAATCAACCCGATCACTCTCTACGTGCTGCT
GAGCCCGCTGCTGGTCCTACTACCACAACCCTCGGTCCAGCTGGGGCTTAGACATA
Found at i:34423417 original size:26 final size:26
Alignment explanation
Indices: 34423381--34423433 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34423371 CCGGTCTGAT
*
34423381 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
34423407 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
34423433 C
1 C
34423434 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34429955 original size:26 final size:26
Alignment explanation
Indices: 34429914--34429965 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
34429904 CTGGTCTAAT
*
34429914 CTTAGACTGAGAATGAACTTCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
* *
34429940 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
34429966 TCTAAGTCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:34430240 original size:355 final size:343
Alignment explanation
Indices: 34429597--34430688 Score: 1004
Period size: 355 Copynumber: 3.1 Consensus size: 343
34429587 CCGATCCAAT
* ** * *** **
34429597 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTGTGGGTGCTTC-G
1 CTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCATAAAACGAGCGTACAGACGC-TCAG
* ** * * ** * * *
34429661 GCAGTCAGAGAGGCATAATG-AGCAAGCCGGGGATCAATCCGGTCCCCCTCTGCGTGCTGTCGGT
65 CCAACCAGAGAGGCAAAATGCA-CAAGCCGAGGATCAGCCCGATCCCCCTCTGCGTGTTGCCGGT
** * *
34429725 CCCGCTGCCACAACCCTCGGTCTAGCCAGGGCTTAAACATGGAATGAAATCCCTATGCCTAAGCC
129 CCCGCTGCCACAACCCTCGGTCTAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCC
* * * * *
34429790 AACCCACGAAACGGGCATGA-GTGTGTTC-GACCGATCGAAGAGGTAGAATGTGCAAGCTGGGGA
194 AACCCACGAAACGAGCAT-ACGGGTGTTCAG-CCGGTCGGAGAGGTAGAATGCGCAAGCTGGGGA
* * *
34429853 TCGACCCGATCCCCCCTACATGCTACCGATCCTGCTGCTGCAACCCTCGGTCTGGTCTAATCTTA
257 TCGACCCGATCCCCCCTACGTGCTATCGATCCTGCTGCTGCAACCCTCGGTCTGGTCTGATCTTA
*
34429918 GACTGAGAATGAACTTCGTATG
322 GACTGGGAATGAACTTCGTATG
* * * * *
34429940 CTTAGACTGGGGATGAACTCCGTATGTCTAAGTCAACCCATAAAATGAGCGTGCAGGCGCTCAGC
1 CTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCATAAAACGAGCGTACAGACGCTCAGC
* * **
34430005 CAATCGGAGAGGCAAAATGTGCAAGCC-AGGGATCAGCCC-AGTCCCCTTCTGCGTGCTACCGAT
66 CAACCAGAGAGGCAAAATGCACAAGCCGA-GGATCAGCCCGA-TCCCC--CT-C-TG----CG--
* ***
34430068 CCTGTTGCCGGTCCTGCTGCCACAACCCTCGGTCTAGCTGGGGCTTAGACATGGAATGAACTTTG
119 --TGTTGCCGGTCCCGCTGCCACAACCCTCGGTCTAGCTGGGGCTTAGACATGGAATGAACTCCC
* * * * *
34430133 TATGCCTAAGCCAACCCACGAAACAAGCGTACGGGCGTTCAGCAGGTCGGAGA-GTCAGAATGCC
182 TATGCCTAAGCCAACCCACGAAACGAGCATACGGGTGTTCAGCCGGTCGGAGAGGT-AGAATGCG
* * * *
34430197 CAAGCTGAGGATCGGTCCTG-TCCCCCCTACGTGCTGTCGATCCTGCTACTGGTCCTCCTACCGC
246 CAAGCTGGGGATC-GACCCGATCCCCCCTACGTGCTATCGATCCTG---CT-G-----CT---GC
*
34430261 AACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAAC-TC-TATACG
298 AACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTTCGTAT--G
* * * * * *
34430307 CTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTACCGATGCTGAG
1 CTTAGAC-TGGGGATGAACTCTGTATGCCTAAGTCAACCCATAAAACGAGCGTACAGACGCTCAG
* * * *
34430371 CCAGCCAGAGAGGCATAATGCATAAGCCGAGGATCAGCCCGATCCCCCTCTGCGTGTTGTCGGTC
65 CCAACCAGAGAGGCAAAATGCACAAGCCGAGGATCAGCCCGATCCCCCTCTGCGTGTTGCCGGTC
* ** * * *
34430436 CCGCTGCCACAACCCTC-ATCCGGTTGGGGCTTAGACATGGAATGAACACCCTATGCCTGAGCCA
130 CCGCTGCCACAACCCTCGGTCTAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
** ** * * * *
34430500 ACCCGTGAAACGATTATGCGGGTGCTCAACCGGTCGGAGAGGTAGAATGCGTAAG-TCGGGGATC
195 ACCCACGAAACGAGCATACGGGTGTTCAGCCGGTCGGAGAGGTAGAATGCGCAAGCT-GGGGATC
* * * *
34430564 GACCCGATCCCCCCTGCGTGCTATCGATCCTGCTGCCGCAACCCTCTGTCTGGTTTGATCTTAGA
259 GACCCGATCCCCCCTACGTGCTATCGATCCTGCTGCTGCAACCCTCGGTCTGGTCTGATCTTAGA
*
34430629 CTGGGAATGAACTCCGTATG
324 CTGGGAATGAACTTCGTATG
*
34430649 CTTAGACTGGGGATGAACTCTGTACGCCTAAGTCAACCCA
1 CTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCA
34430689 GGAAACGAAC
Statistics
Matches: 605, Mismatches: 101, Indels: 87
0.76 0.13 0.11
Matches are distributed among these distances:
341 1 0.00
342 75 0.12
343 89 0.15
344 3 0.00
345 3 0.00
346 1 0.00
347 2 0.00
350 1 0.00
351 4 0.01
353 5 0.01
354 109 0.18
355 162 0.27
356 5 0.01
358 2 0.00
359 3 0.00
363 2 0.00
364 3 0.00
365 5 0.01
366 2 0.00
367 125 0.21
368 3 0.00
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (343 bp):
CTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCATAAAACGAGCGTACAGACGCTCAGC
CAACCAGAGAGGCAAAATGCACAAGCCGAGGATCAGCCCGATCCCCCTCTGCGTGTTGCCGGTCC
CGCTGCCACAACCCTCGGTCTAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
CCCACGAAACGAGCATACGGGTGTTCAGCCGGTCGGAGAGGTAGAATGCGCAAGCTGGGGATCGA
CCCGATCCCCCCTACGTGCTATCGATCCTGCTGCTGCAACCCTCGGTCTGGTCTGATCTTAGACT
GGGAATGAACTTCGTATG
Found at i:34431382 original size:26 final size:26
Alignment explanation
Indices: 34431343--34431395 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
34431333 GGCTCAAAAT
34431343 CTTAGACTGCGAATGAACTCCGTATG
1 CTTAGACTGCGAATGAACTCCGTATG
34431369 CTTAGACATG-GAATGAACTCCGTATG
1 CTTAGAC-TGCGAATGAACTCCGTATG
34431395 C
1 C
34431396 CTAAACCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGCGAATGAACTCCGTATG
Found at i:34431556 original size:26 final size:26
Alignment explanation
Indices: 34431527--34431579 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34431517 CTGGTCTGAT
34431527 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
34431553 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
34431579 C
1 C
34431580 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34431650 original size:184 final size:185
Alignment explanation
Indices: 34431341--34431674 Score: 476
Period size: 184 Copynumber: 1.8 Consensus size: 185
34431331 ATGGCTCAAA
34431341 ATCTTAGACTGCGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAACCAAC
1 ATCTTAGACTGCGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAACCAAC
* * * *
34431406 CCAATAAACGAGCGTACAGGCGCTCAGCCGACCAGAGAGGCAGAATGCGCAAATCGGGGATCGGC
66 CCAAGAAACGAGCGTACAGACGCTCAGCCGACCAGAGAGGCAAAATGCGCAAATCGGGGATCAGC
34431471 CCGGTCCCCCT-TGTGTGCTATCGATCCTGCTACCACAACCCTCACTCTGGTCTG
131 CCGGTCCCCCTCTGTGTGCTATCGATCCTGCTACCACAACCCTCACTCTGGTCTG
* * * **
34431525 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC-TGGGGATGAACTTCGTATGCCTAAGTCAA
1 ATCTTAGACTGCGAATGAACTCCGTATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAACCAA
* * * ** *
34431589 CCCACGAAACGAGTGTGC-GAACGCTCAGCCGGTCAGAGAGGCAAAATGCGCAAGTCGGGGATCA
65 CCCAAGAAACGAGCGTACAG-ACGCTCAGCCGACCAGAGAGGCAAAATGCGCAAATCGGGGATCA
**
34431653 GCTTGGTCCCCCTCTGTGTGCT
129 GCCCGGTCCCCCTCTGTGTGCT
34431675 GCCAGTCTCA
Statistics
Matches: 130, Mismatches: 17, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
183 2 0.02
184 120 0.92
185 8 0.06
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.21
Consensus pattern (185 bp):
ATCTTAGACTGCGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAACCAAC
CCAAGAAACGAGCGTACAGACGCTCAGCCGACCAGAGAGGCAAAATGCGCAAATCGGGGATCAGC
CCGGTCCCCCTCTGTGTGCTATCGATCCTGCTACCACAACCCTCACTCTGGTCTG
Found at i:34432189 original size:158 final size:158
Alignment explanation
Indices: 34431892--34432197 Score: 346
Period size: 158 Copynumber: 1.9 Consensus size: 158
34431882 TCGTATGCTT
* * *
34431892 AGACTGGAGATGAACTCCGTATACCTAAGTCAACCCACGAAACAAGCATGCGGGCGCTCAGCCGA
1 AGACTGGAGATGAACTCCCTATACCTAAGCCAACCCACGAAACAAGCATACGGGCGCTCAGCCGA
* * * ** * * *
34431957 TCGGAGAGGCAAAATGCACAGGCCGGGGATCGACTTGGTCCCCCTCTGCGTGCTCCGGCCCCGCT
66 CCGAAGAGGCAAAATGCACAAGCCGGGGATCGACCCGATCCCCCTCTGCATGCTCCGACCCCGCT
*
34432022 GCCACAACCCTCGGTCCGACTGGGGCTC
131 ACCACAACCCTCGGTCCGACTGGGGCTC
* * * * *
34432050 AGACATGGA-ATGAACTCCCTATGCCTAAGCCAACCCATGAAACAGGCGTACGGGTGCTCAGCCG
1 AGAC-TGGAGATGAACTCCCTATACCTAAGCCAACCCACGAAACAAGCATACGGGCGCTCAGCCG
* * * * * * * *
34432114 GCCGAAGAGGCAGAATGCACAAGCTGGGGATCGGCCCGATCCCTC-CTGCATGCTATCGATCCTG
65 ACCGAAGAGGCAAAATGCACAAGCCGGGGATCGACCCGATCCCCCTCTGCATGCT-CCGACCCCG
*
34432178 CTACCATAACCCTCGGTCCG
129 CTACCACAACCCTCGGTCCG
34432198 GTCCAATCTT
Statistics
Matches: 120, Mismatches: 26, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
157 8 0.07
158 108 0.90
159 4 0.03
ACGTcount: A:0.24, C:0.33, G:0.27, T:0.16
Consensus pattern (158 bp):
AGACTGGAGATGAACTCCCTATACCTAAGCCAACCCACGAAACAAGCATACGGGCGCTCAGCCGA
CCGAAGAGGCAAAATGCACAAGCCGGGGATCGACCCGATCCCCCTCTGCATGCTCCGACCCCGCT
ACCACAACCCTCGGTCCGACTGGGGCTC
Found at i:34432221 original size:342 final size:338
Alignment explanation
Indices: 34431368--34432956 Score: 1388
Period size: 342 Copynumber: 4.7 Consensus size: 338
34431358 AACTCCGTAT
* * *
34431368 GCTTAGACATGGAATGAACTCCGTATGCCTAAACCAACCCAAT-AAACGAGCGTACAGGCGCTCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCC-ATGAAACG-GCGTGCAGGCGCTCA
** * * * *
34431432 GCCGACCAGAGAGGCAGAATGCGCAA-ATCGGGGATCGGCCCGGTCCCCCTTGTGTGCTATCGAT
64 GCCGGTCGGAGAGGCAGAATGCGCAAGCT-GGGGATCGGCCCGGTCCCCC-TGCGTGCTACCGAT
* ** * * *
34431496 CCTGCTACCACAACCCTCACTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
127 CCTGCTGCCACAACCCTCGGTCCGGTCTAATCTTAGA-TTGGAATGAACTCCGTATGCTTAGACT
* * * * **
34431561 GGGGATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGAACGCTCAGCCGGTCAGA
191 GGAGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGGTCAGA
* ** * * * *
34431626 GAGGCAAAATGCGCAAGTCGGGGATC-AGCTTGGTCCCCCTCTGTGTGCTGCCAGTCTCACTGCC
256 GAGGCAAAATGCGCAAGCCGGGGATCGA-CCCGGTCCCCCTCTGCGTGCTGCCGGTCCCGCTGCC
34431690 ACAACCCTCGGT--CTGGTG
320 ACAACCCTCGGTCGCTGG-G
* * *
34431708 G---AG-GATGGAATGAACTCCTTATGCCTAAGCCAACCCATGAAATGGGCGTGCAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAA-CGGCGTGCAGGCGCTCAG
* * * *
34431769 CCGGTCGGAGAGGCATAATGCGCAAGCTGAGGATCGGCCTGGTCCCCCCTGCGTGCCACCGATCC
65 CCGGTCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGGT-CCCCCTGCGTGCTACCGATCC
* * ** ** ** *
34431834 TACTGTCGTAACCCTTTGTCTAGTCTAATCTTAGATTGAGAATGAACTTCGTATGCTTAGACTGG
129 TGCTGCCACAACCCTCGGTCCGGTCTAATCTTAGATTG-GAATGAACTCCGTATGCTTAGACTGG
* * * *
34431899 AGATGAACTCCGTATACCTAAGTCAACCCACGAAACAAGCATGCGGGCGCTCAGCCGATCGGAGA
193 AGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGGTCAGAGA
* * ** *
34431964 GGCAAAATGCACAGGCCGGGGATCGACTTGGTCCCCCTCTGCGTGCT-CCGGCCCCGCTGCCACA
258 GGCAAAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTCTGCGTGCTGCCGGTCCCGCTGCCACA
34432028 ACCCTCGGTCCGACTGGG
323 ACCCTCGGT-CG-CTGGG
* * * *
34432046 GCTCAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAGGCGTACGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAC-GGCGTGCAGGCGCTCAG
* * * * * *
34432111 CCGGCCGAAGAGGCAGAATGCACAAGCTGGGGATCGGCCCGATCCCTCCTGCATGCTATCGATCC
65 CCGGTCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGGTCCC-CCTGCGTGCTACCGATCC
* * * * *
34432176 TGCTACCATAACCCTCGGTCCGGTCCAATCTTAAATTAGGAATGAACTCCGTATGCTTAAACATG
129 TGCTGCCACAACCCTCGGTCCGGTCTAATCTTAGATT-GGAATGAACTCCGTATGCTTAGAC-TG
* * * *
34432241 GA-ATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCATGCGGGCGCTCAGCCGGCCAAAG
192 GAGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGGTCAGAG
* * * * * * * * * *
34432305 AGGCAGAATGTGCAAGCCAGGGATCGGCCCGGTCCCCC-CTGCGTGCTGTCGATCCTGTTACCGC
257 AGGCAAAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTCTGCGTGCTGCCGGTCCCGCTGCCAC
* *
34432369 AACCTTCGGTCTGGTCT-GA
322 AACCCTCGGTC--G-CTGGG
* * ** * *
34432388 TCTTAGAC-TAGGAATGAACTCCGTATGCCTAA-CTCAACCCATGAAACGAGCGTGTGGGCACTG
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGC-CAACCCATGAAACG-GCGTGCAGGCGCTC
* * * * * * *
34432451 AGCCGGTCGGAGAGGCATAATGCGTAAGCCGGGGATCGACCCGATCCCCCTTTGCGTGCTGCCGG
63 AGCCGGTCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGGTCCCCC--TGCGTGCTACCGA
* *
34432516 TCCCGCTGCCACAA-CC-C--T-C-G----ATC-T-GACT-G---G------G---GCTTAGACA
126 TCCTGCTGCCACAACCCTCGGTCCGGTCTAATCTTAGATTGGAATGAACTCCGTATGCTTAGAC-
* * * * *
34432556 TGGA-ATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCAGGTGCTCAGCTGGTCGG
190 TGGAGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGGTCAG
* * * * * ** *
34432620 AGAGGCAGAATGCGCAAGCCGGGGATCGACCCAGTCCCCATCTACGTGCTGTCGGTATCGCTGTC
255 AGAGGCAAAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTCTGCGTGCTGCCGGTCCCGCTGCC
* * **
34432685 AAAACCATCGGTCTGGCTAAG
320 ACAACCCTCGGTC--GCTGGG
* *
34432706 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCTAACCCATGAAACAGGCGTGCAGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAC-GGCGTGCAGGCGCTCAG
* * * * * * *
34432771 CCAGTCGGAGAGGCAGAATACGAAAGCCGAGGATCGACTCGGTCTCCCCTGCGTGCTACCGATCC
65 CCGGTCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGGTC-CCCCTGCGTGCTACCGATCC
* * * * * *
34432836 TGCTGCCGCAACCCTCGATGCGGTCTGATCTTAGATGGGGAATGAACTCCATATGCTTAGACTGG
129 TGCTGCCACAACCCTCGGTCCGGTCTAATCTTAGAT-TGGAATGAACTCCGTATGCTTAGACTGG
* * * * **
34432901 GGATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGATGCTCAGCC
193 AGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGCC
34432957 CACCAGAGAG
Statistics
Matches: 1013, Mismatches: 177, Indels: 115
0.78 0.14 0.09
Matches are distributed among these distances:
317 125 0.12
318 119 0.12
319 8 0.01
320 1 0.00
321 1 0.00
322 1 0.00
323 1 0.00
326 1 0.00
327 3 0.00
328 1 0.00
329 3 0.00
331 3 0.00
332 1 0.00
333 3 0.00
334 1 0.00
335 26 0.03
336 241 0.24
337 11 0.01
338 3 0.00
339 5 0.00
340 1 0.00
341 21 0.02
342 350 0.35
343 83 0.08
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (338 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGCGTGCAGGCGCTCAGC
CGGTCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGGTCCCCCTGCGTGCTACCGATCCTG
CTGCCACAACCCTCGGTCCGGTCTAATCTTAGATTGGAATGAACTCCGTATGCTTAGACTGGAGA
TGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGGTCAGAGAGGC
AAAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTCTGCGTGCTGCCGGTCCCGCTGCCACAACC
CTCGGTCGCTGGG
Found at i:34432361 original size:184 final size:184
Alignment explanation
Indices: 34432052--34432415 Score: 512
Period size: 184 Copynumber: 2.0 Consensus size: 184
34432042 TGGGGCTCAG
* * * *
34432052 ACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAGGCGTACGGGTGCTCAGCCGGCC
1 ACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAAGCATACGGGCGCTCAGCCGGCC
* ** *
34432117 GAAGAGGCAGAATGCACAAGCTGGGGATCGGCCCGATCCCTCCTGCATGCTATCGATCCTGCTAC
66 AAAGAGGCAGAATGCACAAGCCAGGGATCGGCCCGATCCCCCCTGCATGCTATCGATCCTGCTAC
* *
34432182 CATAACCCTCGGTCCGGTCCAATCTTAAATTAGGAATGAACTCCGTATGCTTAA
131 CACAACCCTCGGTCCGGTCCAATCTTAAACTAGGAATGAACTCCGTATGCTTAA
* *
34432236 ACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCATGCGGGCGCTCAGCCGGCC
1 ACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAAGCATACGGGCGCTCAGCCGGCC
** * * * *
34432301 AAAGAGGCAGAATGTGCAAGCCAGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCTGTTAC
66 AAAGAGGCAGAATGCACAAGCCAGGGATCGGCCCGATCCCCCCTGCATGCTATCGATCCTGCTAC
* * * ** *
34432366 CGCAACCTTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGC
131 CACAACCCTCGGTCCGGTCCAATCTTAAACTAGGAATGAACTCCGTATGC
34432416 CTAACTCAAC
Statistics
Matches: 156, Mismatches: 24, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
184 156 1.00
ACGTcount: A:0.25, C:0.30, G:0.25, T:0.20
Consensus pattern (184 bp):
ACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAAGCATACGGGCGCTCAGCCGGCC
AAAGAGGCAGAATGCACAAGCCAGGGATCGGCCCGATCCCCCCTGCATGCTATCGATCCTGCTAC
CACAACCCTCGGTCCGGTCCAATCTTAAACTAGGAATGAACTCCGTATGCTTAA
Found at i:34432578 original size:159 final size:157
Alignment explanation
Indices: 34432230--34432854 Score: 626
Period size: 159 Copynumber: 3.9 Consensus size: 157
34432220 AACTCCGTAT
* * *
34432230 GCTTAAACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCATGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCAGGCGCTCAG
* ** * * * * *
34432295 CCGGCCAAAGAGGCAGAATGTGCAAGCCAGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCC
66 CCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTGCCGATCC
* * * * * * * *
34432360 TGTTACCGCAACCTTCGGTCTGGTCTGA
131 CGCTGCCACAACCCTCGATCT-GACTGG
* * * ** * *
34432388 TCTTAGAC-TAGGAATGAACTCCGTATGCCTAA-CTCAACCCATGAAACGAGCGTGTGGGCACTG
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGC-CAACCCACGAAACAAGCGTGCAGGCGCTC
* * * *
34432451 AGCCGGTCGGAGAGGCATAATGCGTAAGCCGGGGATCGACCCGATCCCCCTTTGCGTGCTGCCGG
64 AGCCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCC-CTGCGTGCTGCCGA
34432516 TCCCGCTGCCACAACCCTCGATCTGACTGGG
128 TCCCGCTGCCACAACCCTCGATCTGACT-GG
*
34432547 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCAGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCAGGCGCTCAG
* * * * *
34432612 CTGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCC-AGTCCCCATCTACGTGCTGTCGGT
66 CCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGA-TCCCC-CCTGCGTGCTGCCGAT
** * * * * * *
34432676 ATCGCTGTCAAAACCATCGGTCTGGCTAAG
129 CCCGCTGCCACAACCCTCGATCTGACT-GG
* * * * *
34432706 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCTAACCCATGAAACAGGCGTGCAGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCAGGCGCTCAG
* * * * * * * *
34432771 CCAGTCGGAGAGGCAGAATACGAAAGCCGAGGATCGACTCGGTCTCCCCTGCGTGCTACCGATCC
66 CCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTGCCGATCC
* *
34432836 TGCTGCCGCAACCCTCGAT
131 CGCTGCCACAACCCTCGAT
34432855 GCGGTCTGAT
Statistics
Matches: 381, Mismatches: 77, Indels: 18
0.80 0.16 0.04
Matches are distributed among these distances:
157 2 0.01
158 120 0.31
159 257 0.67
160 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.18
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCAGGCGCTCAG
CCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTGCCGATCC
CGCTGCCACAACCCTCGATCTGACTGG
Found at i:34432826 original size:317 final size:315
Alignment explanation
Indices: 34432230--34432854 Score: 778
Period size: 317 Copynumber: 2.0 Consensus size: 315
34432220 AACTCCGTAT
*
34432230 GCTTAAACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCATGCGGGCGCTCAG
1 GCTTAAACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCATGCAGGCGCTCAG
* * * *
34432295 CCGGCCAAAGAGGCAGAATGTGCAAGCCAGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCC
66 CCGGCCAAAGAGGCAGAATGCGCAAGCCAGGGATCGACCCAGTCCCCCCTACGTGCTGTCGATCC
** * * * *
34432360 TGTTACCGCAACCTTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAACTCAA
131 TGTTA-CAAAACCATCGGTCTGGTCTAAGCTTAGACTAGGAATGAACTCCCTATGCCTAACTCAA
** * * * * * *
34432425 CCCATGAAACGAGCGTGTGGGCACTGAGCCGGTCGGAGAGGCATAATGCGTAAGCCGGGGATCGA
195 CCCATGAAACGAGCGTGCAGGCACTCAGCCAGTCGGAGAGGCAGAATACGAAAGCCGAGGATCGA
* *
34432490 CCCGATCCCCCTTTGCGTGCTGCCGGTCCCGCTGCCACAACCCTCGATCTGACTGGG
260 CCCGATCCCCC-TTGCGTGCTACCGATCCCGCTGCCACAACCCTCGATCTGACTGGG
* * *
34432547 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCAGGTGCTCAG
1 GCTTAAACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCATGCAGGCGCTCAG
* * ** * *
34432612 CTGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCAGTCCCCATCTACGTGCTGTCGGTA
66 CCGGCCAAAGAGGCAGAATGCGCAAGCCAGGGATCGACCCAGTCCCC-CCTACGTGCTGTC-G-A
34432677 TCGCTG-T-CAAAACCATCGGTCTGG-CTAAGGCTTAGAC-ATGGAATGAACTCCCTATGCCTAA
128 TC-CTGTTACAAAACCATCGGTCTGGTCTAA-GCTTAGACTA-GGAATGAACTCCCTATGCCTAA
**
34432738 GCT-AACCCATGAAAC-AGGCGTGCAGGTGCTCAGCCAGTCGGAGAGGCAGAATACGAAAGCCGA
190 -CTCAACCCATGAAACGA-GCGTGCAGGCACTCAGCCAGTCGGAGAGGCAGAATACGAAAGCCGA
* * * *
34432801 GGATCGACTCGGTCTCCCC-TGCGTGCTACCGATCCTGCTGCCGCAACCCTCGAT
253 GGATCGACCCGATC-CCCCTTGCGTGCTACCGATCCCGCTGCCACAACCCTCGAT
34432855 GCGGTCTGAT
Statistics
Matches: 263, Mismatches: 36, Indels: 18
0.83 0.11 0.06
Matches are distributed among these distances:
317 136 0.52
318 113 0.43
319 7 0.03
320 4 0.02
321 3 0.01
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.18
Consensus pattern (315 bp):
GCTTAAACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCATGCAGGCGCTCAG
CCGGCCAAAGAGGCAGAATGCGCAAGCCAGGGATCGACCCAGTCCCCCCTACGTGCTGTCGATCC
TGTTACAAAACCATCGGTCTGGTCTAAGCTTAGACTAGGAATGAACTCCCTATGCCTAACTCAAC
CCATGAAACGAGCGTGCAGGCACTCAGCCAGTCGGAGAGGCAGAATACGAAAGCCGAGGATCGAC
CCGATCCCCCTTGCGTGCTACCGATCCCGCTGCCACAACCCTCGATCTGACTGGG
Found at i:34433636 original size:26 final size:26
Alignment explanation
Indices: 34433598--34433650 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34433588 GGCTCAAACT
*
34433598 CTTAGACCAGGAATGAACTCCGTATG
1 CTTAGACCAGGAATGAACTCCATATG
34433624 CTTAGA-CATGGAATGAACTCCATATG
1 CTTAGACCA-GGAATGAACTCCATATG
34433650 C
1 C
34433651 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 2 0.08
26 23 0.92
ACGTcount: A:0.32, C:0.23, G:0.21, T:0.25
Consensus pattern (26 bp):
CTTAGACCAGGAATGAACTCCATATG
Found at i:34434561 original size:159 final size:155
Alignment explanation
Indices: 34434174--34434618 Score: 401
Period size: 159 Copynumber: 2.8 Consensus size: 155
34434164 AACTCCGTAT
* ** * * *
34434174 GCTTAGACATGGAATGAACTCCGTATGTCTAAGCCAACCCGTGAAATGAGCGTGCGAGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAG-CAACCCACGAAAAGAGCGTGCGGGCGCTCAG
* * * * *
34434239 CCGATCGGATAGGTAGAATGCGCAAGCTGGGGATCAGCCCGATCCCCCCTGCGTGCTGTCGATCC
65 -CGATCGGAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCGATCCCCCCTACGTGCTGTCGATCC
* ** * *
34434304 TGCTGTACAACCCTCAGTTCGGTCCAA
129 CGCTCCACAACCCTCAATCCGGTCCAA
* * * * *
34434331 TCTTAGAC-TGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAAGAGCCCT-CAGGAGCTAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAG-CAACCCACGAAAAGAG-CGTGCGGGCGCTCA
* * * * * *
34434394 GCTAATCGGAGAGGCATAATGCGTAAGCCGAGGAT-TGACCCGATCCCCCTCTATGTGCTGTCGG
64 GC-GATCGGAGAGGCAGAATGCGCAAGCCGAGGATCAG-CCCGATCCCCC-CTACGTGCTGTCGA
****
34434458 TCCCGCTACCACAACCCTCAATCCGGTTGGG
126 TCCCGCT-CCACAACCCTCAATCCGGTCCAA
* *
34434489 GCTTAGACATTGAATGAACTCCGTATGCCTAAGCAAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGC-AACCCACGAAAAGAGCGTGCGGGCGCTCAG
* * * * * * ** *
34434554 TCGATCGGAGAGGCAGAATACGCAAGTCGGGGATCGGCCTGATCCCTCCTGTGTACTGTCGATCC
65 -CGATCGGAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCGATCCCCCCTACGTGCTGTCGATCC
34434619 TGCTGCTGGT
Statistics
Matches: 227, Mismatches: 51, Indels: 19
0.76 0.17 0.06
Matches are distributed among these distances:
155 2 0.01
156 78 0.34
157 26 0.11
158 39 0.17
159 80 0.35
160 2 0.01
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (155 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCAACCCACGAAAAGAGCGTGCGGGCGCTCAGC
GATCGGAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCGATCCCCCCTACGTGCTGTCGATCCCG
CTCCACAACCCTCAATCCGGTCCAA
Found at i:34434698 original size:26 final size:26
Alignment explanation
Indices: 34434660--34434712 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
34434650 CCGGTCCGAT
34434660 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
34434686 CTTAGACAT-GGAATGAACTTCGTATG
1 CTTAGAC-TGGGAATGAACTTCGTATG
34434712 C
1 C
34434713 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:34435067 original size:514 final size:504
Alignment explanation
Indices: 34434102--34435280 Score: 1326
Period size: 514 Copynumber: 2.3 Consensus size: 504
34434092 TACGTGCTGC
** * ** *
34434102 CGATCCTGCTGCTGGTCCTGCTACCGCAACCCTCAATTCGGTCTAATCTTAGATTGGGAATGAAC
1 CGATCCTGCTGCTGGTCCTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAAC
* * * ** *
34434167 TCCGTATGCTTAGACATGGAATGAACTCCGTATGTCTAAGCCAACCCGTGAAATGAGCGTGCGAG
66 TCTGTATGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGG
* * * * * * * * * * *
34434232 CACTCAGCCGATCGGATAGGTAGAATGCGCAAGCTGGGGATCAGCCCGATCCCCCCTGCGTGCTG
131 CGCTCAGTCGACCGGAGAGGCAAAATGCACAAGCCGCGGATCAGCCCGATCCCCCCTACGTGCTA
*
34434297 TCGATCCTGCTGTACAACCCTCAGTTCGGTCCAATCTTAGACTGGAATGAACTCCGTATGCCTAA
196 TCGATCCTGCTCTACAACCCTCAGTTCGGTCCAATCTTAGACTGGAATGAACTCCGTATGCCTAA
* * *
34434362 GTCAACCCACGAAAAGAGCCCTCAGGAGCTAAGCTAATCGGAGAGGCATAATGCGTAAGCCGAGG
261 GTCAACCCACGAAAAGAGCCCTCAGGAGCTAAGCCAACCGGAGAGGCATAATGCGCAAGCCGAGG
* * * * *
34434427 ATTGACCCGATCCCCCTCTATGTGCTGTCGGTCCCGCTACCACAACCCTCAATCCGGTTGGGGCT
326 ATCGACCCGATCCCCCTCTACGTGCTGCCGGTCCCGCTACCACAACACTCAATCCGGCTGGGGCT
* * * *
34434492 TAGACATTGAATGAACTCCGTATGCCTAAGCAAACCCACGAAACGAGCGTGCGGGCGCTCAGTCG
391 TAGACATGGAATGAACTCCCTATGCCTAAGCAAACCCACGAAACGAGCGTGCGGCCGCTCAGCCG
* *
34434557 ATCGGAGAGGCAGAATA-CGCAAGTCGGGGATCGGCCTGATCCCTCCTGTGTACTGT
456 ATCGGAGAGGCAGAA-AGCGCAAGACGGGGATCGGCCCGAT-CCT-C--T-T--TGT
* **
34434613 CGATCCTGCTGCTGGTCCTACTACCATAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAAC
1 CGATCCTGCTGCTGGTCCTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAAC
*
34434678 TCTGTATGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAATGAGTGTGCGGG
66 TCTGTATGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGG
* * * **
34434743 GGCTCAGTCGGCCTGAGAGGCAAAATGCACAAGCCGCGGATTGGCCCGATCCTCCCCTACGTGCT
131 CGCTCAGTCGACCGGAGAGGCAAAATGCACAAGCCGCGGATCAGCCCGATCC-CCCCTACGTGCT
* ** *
34434808 ATTGATCCTGCTACTACAACCCTCAG-TCTGGTCTGATCTTAGACTGGGAATGATCTCCGTATGC
195 ATCGATCCTGCT-CTACAACCCTCAGTTC-GGTCCAATCTTAGACT-GGAATGAACTCCGTATGC
* * * ** *
34434872 CTAAGTGAACCCA-TAAAATGAG-CGTGC-GG-GC-ACAGAACCGGCCGGAGAGTCATAATGCGC
257 CTAAGTCAACCCACGAAAA-GAGCCCT-CAGGAGCTA-AG--CCAACCGGAGAGGCATAATGCGC
* *** * * ***
34434932 AAGCTG-GAGATCGTTTCGGTCCCCCTCTACGTGCTGCCGG-CCGTGCTACCACAACACTTGGTC
317 AAGCCGAG-GATCGACCCGATCCCCCTCTACGTGCTGCCGGTCC-CGCTACCACAACACTCAATC
* * *
34434995 CGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCTAACCCATGAAACGGGCGTGCGG
380 CGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCAAACCCACGAAACGAGCGTGCGG
* * *
34435060 CCGCTCAGCCGGTTGGAGAGGCAGAAAGCGTAAGACGGGGATCGGCCCGATCCTCTTTGT
445 CCGCTCAGCCGATCGGAGAGGCAGAAAGCGCAAGACGGGGATCGGCCCGATCCTCTTTGT
* * *
34435120 -G-TGCTG-T-C-GATCCTGCTACCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAAC
1 CGATCCTGCTGCTGGTCCTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAAC
* * *
34435180 TCTGTATGCTTAGAC-TGGGGATGAACTTCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCAG
66 TCTGTATGCTTAGACAT-GGAATGAACTTCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGG
** ** *
34435244 GCGCTCAGTCGACAAGAGAGGCAGGATGCGCAAGCCG
130 GCGCTCAGTCGACCGGAGAGGCAAAATGCACAAGCCG
34435281 AAGATCGAAC
Statistics
Matches: 566, Mismatches: 89, Indels: 35
0.82 0.13 0.05
Matches are distributed among these distances:
501 1 0.00
502 135 0.24
503 1 0.00
504 1 0.00
505 4 0.01
506 1 0.00
507 3 0.01
509 1 0.00
510 1 0.00
511 153 0.27
512 28 0.05
513 41 0.07
514 196 0.35
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (504 bp):
CGATCCTGCTGCTGGTCCTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAAC
TCTGTATGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGG
CGCTCAGTCGACCGGAGAGGCAAAATGCACAAGCCGCGGATCAGCCCGATCCCCCCTACGTGCTA
TCGATCCTGCTCTACAACCCTCAGTTCGGTCCAATCTTAGACTGGAATGAACTCCGTATGCCTAA
GTCAACCCACGAAAAGAGCCCTCAGGAGCTAAGCCAACCGGAGAGGCATAATGCGCAAGCCGAGG
ATCGACCCGATCCCCCTCTACGTGCTGCCGGTCCCGCTACCACAACACTCAATCCGGCTGGGGCT
TAGACATGGAATGAACTCCCTATGCCTAAGCAAACCCACGAAACGAGCGTGCGGCCGCTCAGCCG
ATCGGAGAGGCAGAAAGCGCAAGACGGGGATCGGCCCGATCCTCTTTGT
Found at i:34435198 original size:26 final size:26
Alignment explanation
Indices: 34435162--34435214 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34435152 CCGATCCGAT
34435162 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
*
34435188 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
34435214 C
1 C
34435215 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:34435811 original size:11 final size:11
Alignment explanation
Indices: 34435795--34435838 Score: 79
Period size: 11 Copynumber: 4.0 Consensus size: 11
34435785 CGGTTATGCT
34435795 CTCCGACGATG
1 CTCCGACGATG
*
34435806 CTCCGATGATG
1 CTCCGACGATG
34435817 CTCCGACGATG
1 CTCCGACGATG
34435828 CTCCGACGATG
1 CTCCGACGATG
34435839 ATTCCCTAGG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
11 31 1.00
ACGTcount: A:0.18, C:0.34, G:0.27, T:0.20
Consensus pattern (11 bp):
CTCCGACGATG
Found at i:34436451 original size:26 final size:26
Alignment explanation
Indices: 34436410--34436465 Score: 96
Period size: 26 Copynumber: 2.2 Consensus size: 26
34436400 CTGATCTGAT
34436410 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCTATATG
34436436 CTTAGACTAGGG-ATGAACTCTATATG
1 CTTAGACT-GGGAATGAACTCTATATG
34436462 CTTA
1 CTTA
34436466 AGTCAACCCA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
26 26 0.90
27 3 0.10
ACGTcount: A:0.30, C:0.16, G:0.21, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTATATG
Found at i:34437106 original size:184 final size:184
Alignment explanation
Indices: 34436797--34437163 Score: 481
Period size: 184 Copynumber: 2.0 Consensus size: 184
34436787 GGGGCTTAGG
* * * * *
34436797 CATGGAATGAACTCCGTATGCCTAAGCTAACACACGAAACGAGCGTGCGAGGGCTCAACCGGCCG
1 CATGGAATGAACTCCGTATGCCTAAGCCAACACACGAAACGAGCATGCGAGGACTCAACAGGCAG
** * * * *
34436862 AAGAGGCAGAATGTGCAAGATGGGGATCGGCTCGGTCCCCCCTGCGTGCTGTCCATCCTGCTGCC
66 AAGAGGCAGAATGCACAAGATGAGGATCGGCCCGATCCCCCCTGCGTGCTATCCATCCTGCTGCC
* * *
34436927 GCAACCCTTGATCCAG-TCTGATTTTAGACTGGGAATGAACTCTGTATG-CTAAGA
131 GC-ACCCTTGAT-CAGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGA
* * *
34436981 CATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCG-GGCACTCAGCAAGTC
1 CATGGAATGAACTCCGTATGCCTAAGCCAACACACGAAACGAGCATGCGAGG-ACTCAAC-AGGC
* *
34437045 AG-AGAGGCAGAATGCACAAGCTGAGGATCGGCCCGATCCCCCCTGCGTGCTATCGATCCTGCTG
64 AGAAGAGGCAGAATGCACAAGATGAGGATCGGCCCGATCCCCCCTGCGTGCTATCCATCCTGCTG
* *
34437109 CCGCACCCTTGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
129 CCGCACCCTTGATCAGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
34437164 TCAAACCATA
Statistics
Matches: 158, Mismatches: 21, Indels: 8
0.84 0.11 0.04
Matches are distributed among these distances:
182 2 0.01
183 39 0.25
184 114 0.72
185 3 0.02
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.20
Consensus pattern (184 bp):
CATGGAATGAACTCCGTATGCCTAAGCCAACACACGAAACGAGCATGCGAGGACTCAACAGGCAG
AAGAGGCAGAATGCACAAGATGAGGATCGGCCCGATCCCCCCTGCGTGCTATCCATCCTGCTGCC
GCACCCTTGATCAGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGA
Found at i:34437492 original size:26 final size:26
Alignment explanation
Indices: 34437449--34437501 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
34437439 CTGATTCAAT
* *
34437449 CTTAGATTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAACGAACTTC-GTATG
*
34437475 CTTAGACTGGGGACGAACTTCGTATG
1 CTTAGACTGGGAACGAACTTCGTATG
34437501 C
1 C
34437502 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAACGAACTTCGTATG
Found at i:34438185 original size:880 final size:875
Alignment explanation
Indices: 34436950--34438916 Score: 2265
Period size: 880 Copynumber: 2.2 Consensus size: 875
34436940 CAGTCTGATT
* *
34436950 TTAGACTGGGAATGAACTCTGTATGCTAAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA
1 TTAGACTGGGAATGAATTCCGTATGCT-AGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA
* * * * * * *
34437015 CGAAACGAGCATGCGGGCACTCAGCAAGTCAGAGAGGCAGAATGCACAAGCTGAGGATCGGCCCG
65 TGAAACGAGCGTGCGGGCACTCAGC-GGTCGGAGAGGCAGAATGCACAAGCCGGGGATC-GCCAG
* * * * * * *
34437080 ATCCCCCCTGCGTGCTATCGATCCTGCTGCCG-CACCCTTGGTCTGATCCGATCTTAGACTGGGA
128 -TCCCCCCTACGTGCTATCGATCCTGCTGTCGTAACCCTCGATCCGATCTGATCTTAGACTGGGA
* *
34437144 ATGAACTCCGTATGCCTAAGTCAAACCATAAAACAAGCGTGCGAGCGCTAAGCTGGTCGAAGAGG
192 ATGAACTCCGTATGCCTAAGTCAAACCACAAAACAAGCGTGCGAGCACTAAGCTGGTCGAAGAGG
* * * *
34437209 CATAATACGCAAGTCGGGGATCGACTCGGTCGCCCTCTACATGCTGTCGGTCTCGCTACCACAAC
257 CATAATACGCAAGTCAGGGATCGACCCGATCGCCCTCTACATGCTGTCGGTCTCGCTACCAAAAC
* * * ** *
34437274 CTTCGGTTCGGCTGGGGCTTAGACGTGGAATGAACTCCCTATGCCTAAGCCAACTTACGAAATAG
322 CCTCGGTTCGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAG
* * * * * *
34437339 GCGTGCGGGTGCTCAACCGGTCGGAGAGGCAGAATGAGCAAGCCGAGGATC-GACCCGATCCTCT
387 GCGTACGGGTGCTCAACCAGCCAGAGAGGCAGAATGAGCAAGCCGAGGATCAG-CCCGATCCCCC
* * * * * * * *
34437403 CTGCGTGCTA-CTGATCTTGCTGTCGTAACCCT-CGATCTGAT-TCAATCTTAGATTGGGAATGA
451 CTACGTGCTACCT-ATCCTACAGTCGCAACCCTCCGATC-GGTCT-AATCTTAGACTAGGAATGA
* * * *
34437465 ACTCTGTATGCTTAGACTGGGGACGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTACA
513 ACTCCGTATGCTTAGACTGGGGACGAACTCCGTATGCCTAAGTCAACCCATAAAACAAGCGTACA
* * * * * * *
34437530 AGTGCTTAACC-GATCGAAGAGGCTGACTGGAGAGGCATAATACGCAAGCC-GAGGATAAATCCG
578 AGTGCTCAACCAG-CCGAAGAGGCCGACCGGAGAGGCATAATACACAAGCCAG-GGATAAACCCC
* * * * *
34437593 ATCCCCCTCAGTGTGCTATCGATCTCACTGTCGGTCCTACTAACACAGCCCTCGATCTGGTTGGG
641 ATCCCCCTCAGCGTGCTATCAATCTCACTGTCGGTCCTACTAACACAGCCCTCGACCCGGCTGGG
* * * *
34437658 GCTTAGACATGGAATGAACTCTGTATGCCTACGCCAACCCACGAAACGAGCGTACAGGCGCTCAG
706 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCAAACCCACGAAACAAGCGTACAGGCGCCCAG
* * * *
34437723 CCAGTTGGAAAGGCAGAATGCACAAGCCGGGGATCAGCCCGATGCCCCCTACGTGCTACT-GATC
771 CC-GGTCGAAACGCAGAATGCACAAGCCGGGGATCAGCCCGA-ACCCCCTACGTGCT-CTCGATC
* * ** * *
34437787 TTGTTACTGGTCCTGCTGTCGCAACCCTCAGTCTGGTCCGATC
833 CTGCTACTAATCCTGCTGCCACAACCCTCAGTCTGGTCCGATC
* *
34437830 TTAGACTGGGAATGAATTCCGTATGCATAGACATGGATTGAACTTCGTATGCCTAAGCCAACCCA
1 TTAGACTGGGAATGAATTCCGTATGC-TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA
* *
34437895 TGAAACGAGCGTGCAGGCACTCAGTCGGTCGGAGAGGCAGAATGCATAAGCCGGGGATCGACCTA
65 TGAAACGAGCGTGCGGGCACTCAG-CGGTCGGAGAGGCAGAATGCACAAGCCGGGGATCG-CC-A
* *
34437960 GTCCCCCCTACGTGCTATCGATCCTACTGTCGTAACCCTCGATCCGGTCTGATCTTAGACTGGGA
127 GTCCCCCCTACGTGCTATCGATCCTGCTGTCGTAACCCTCGATCCGATCTGATCTTAGACTGGGA
* * * ** * * * *
34438025 ATGAACTCCCTATGCCTAAGTCAACCCACGAAATGAGTGTGCGGGCACTGAGCTGG-CTGGAGAG
192 ATGAACTCCGTATGCCTAAGTCAAACCACAAAACAAGCGTGCGAGCACTAAGCTGGTC-GAAGAG
* * *
34438089 GCATAATACGCAAGTCAGGGATCGGCCCGATC-CTCTCCTGCATGCTGTCGGTC-CTGCTACCAA
256 GCATAATACGCAAGTCAGGGATCGACCCGATCGCCCT-CTACATGCTGTCGGTCTC-GCTACCAA
34438152 AACCCTCGG-TCTGGCTAGGG-TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAA
319 AACCCTCGGTTC-GGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAA
* * * * * *
34438215 ACGGGCGTACGGGTGCTCAGCCAGCCAGAGAGGCAGAATGCGCAAGCTGGGGATCAGCTCGATCC
383 ACAGGCGTACGGGTGCTCAACCAGCCAGAGAGGCAGAATGAGCAAGCCGAGGATCAGCCCGATCC
* *
34438280 CCCCTACGTGCTACCTATCCTACAGTCGCAACCCTCCGTTCGGTCTGATCTTAGACTAGGAATGA
448 CCCCTACGTGCTACCTATCCTACAGTCGCAACCCTCCGATCGGTCTAATCTTAGACTAGGAATGA
* * * *
34438345 ACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTTAACCCATAAAACAAGCGTGCG
513 ACTCCGTATGCTTAGACTGGGGACGAACTCCGTATGCCTAAGTCAACCCATAAAACAAGCGTACA
* * * * * *
34438410 GGTGCTCAGCCAGCCGGAGAGGCCGACCGGAGAGGCATAATGCACAAGCCAGGGATCAGCCCCAT
578 AGTGCTCAACCAGCCGAAGAGGCCGACCGGAGAGGCATAATACACAAGCCAGGGATAAACCCCAT
* * ** * * * * *
34438475 CCCCCTCTGCGTGCTGTCAATCTTGCTTTCGGTCCTGCTACCACAGCCCTTGGCCCGGCTGGGGC
643 CCCCCTCAGCGTGCTATCAATCTCACTGTCGGTCCTACTAACACAGCCCTCGACCCGGCTGGGGC
* *** * *
34438540 TTAGACATGGAATGAACTCTGTATGCCTAAGCAAACCCATGAAACAAGCGTGTGGGTGCCCAGTC
708 TTAGACATGGAATGAACTCTGTATGCCTAAGCAAACCCACGAAACAAGCGTACAGGCGCCCAGCC
* * ** *
34438605 GGTCGAGACGTAGAATGCACAAGCCGGGGATTGGCCCGAACCCCCTACGTGCTGTCGATCCTGCT
773 GGTCGAAACGCAGAATGCACAAGCCGGGGATCAGCCCGAACCCCCTACGTGCTCTCGATCCTGCT
* ** *
34438670 GCTAATCCTGCTGCCACAACCCTTGGTCTGGTTCGATC
838 ACTAATCCTGCTGCCACAACCCTCAGTCTGGTCCGATC
* *
34438708 TTAGACTGGGAATGAACTT-CGCATGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCC
1 TTAGACTGGGAATGAA-TTCCGTATGC-TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCC
* ** * * * *
34438772 ATGAAACGGGCGTG-GGGTGCTCAGCCGATCGGAGAGGC-GAAATGCACAAGTCAGGGACCCGCC
64 ATGAAACGAGCGTGCGGGCACTCAG-CGGTCGGAGAGGCAG-AATGCACAAGCCGGGGA-TCG-C
** * *
34438835 CAGTCCTTCCTACGTGCTACCGATCCTGCTATCGTAACCCTCGATCCGATCTGATCTTAGACTGG
125 CAGTCCCCCCTACGTGCTATCGATCCTGCTGTCGTAACCCTCGATCCGATCTGATCTTAGACTGG
*
34438900 AAATGAACTCCGTATGC
190 GAATGAACTCCGTATGC
34438917 TTAGACTGGG
Statistics
Matches: 912, Mismatches: 156, Indels: 41
0.82 0.14 0.04
Matches are distributed among these distances:
876 1 0.00
877 107 0.12
878 123 0.13
879 35 0.04
880 491 0.54
881 155 0.17
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.21
Consensus pattern (875 bp):
TTAGACTGGGAATGAATTCCGTATGCTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAT
GAAACGAGCGTGCGGGCACTCAGCGGTCGGAGAGGCAGAATGCACAAGCCGGGGATCGCCAGTCC
CCCCTACGTGCTATCGATCCTGCTGTCGTAACCCTCGATCCGATCTGATCTTAGACTGGGAATGA
ACTCCGTATGCCTAAGTCAAACCACAAAACAAGCGTGCGAGCACTAAGCTGGTCGAAGAGGCATA
ATACGCAAGTCAGGGATCGACCCGATCGCCCTCTACATGCTGTCGGTCTCGCTACCAAAACCCTC
GGTTCGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGCGT
ACGGGTGCTCAACCAGCCAGAGAGGCAGAATGAGCAAGCCGAGGATCAGCCCGATCCCCCCTACG
TGCTACCTATCCTACAGTCGCAACCCTCCGATCGGTCTAATCTTAGACTAGGAATGAACTCCGTA
TGCTTAGACTGGGGACGAACTCCGTATGCCTAAGTCAACCCATAAAACAAGCGTACAAGTGCTCA
ACCAGCCGAAGAGGCCGACCGGAGAGGCATAATACACAAGCCAGGGATAAACCCCATCCCCCTCA
GCGTGCTATCAATCTCACTGTCGGTCCTACTAACACAGCCCTCGACCCGGCTGGGGCTTAGACAT
GGAATGAACTCTGTATGCCTAAGCAAACCCACGAAACAAGCGTACAGGCGCCCAGCCGGTCGAAA
CGCAGAATGCACAAGCCGGGGATCAGCCCGAACCCCCTACGTGCTCTCGATCCTGCTACTAATCC
TGCTGCCACAACCCTCAGTCTGGTCCGATC
Found at i:34438334 original size:158 final size:157
Alignment explanation
Indices: 34437868--34438355 Score: 430
Period size: 158 Copynumber: 3.1 Consensus size: 157
34437858 AGACATGGAT
* * * * * *
34437868 TGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCACTCAGTCGGTCGGAGAGGC
1 TGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCGGAGAGGC
** * * * * *
34437933 AGAATGCATAAGCCGGGGATCGACCTAG-TCCCCCCTACGTGCTATCGATCCTACTGTCGTAACC
66 AGAATGCGCAAGCTGGGGATC-AGCTCGATCCCCCCTACGTGCTATCGATCCTACAGTCGAAACC
* *
34437997 CTCGATCCGGTCTGATCTTAGACTGGGAA
130 CTCG-TTCGGTCTGATCTTAGACTAGGAA
* * * * * *
34438026 TGAACTCCCTATGCCTAAGTCAACCCACGAAATGAGTGTGCGGGCACTGAGCTGGCTGGAGAGGC
1 TGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCGGAGAGGC
* * * * * * * * * * * * *
34438091 ATAATACGCAAG-TCAGGGATCGGCCCGATCCTCTCCTGCATGCTGTCGGTCCTGCTA-CCAAAA
66 AGAATGCGCAAGCT-GGGGATCAGCTCGATCC-CCCCTACGTGCTATCGATCCTAC-AGTCGAAA
* **
34438154 CCCTCGGTCTGG-CT-AGGGTTAGAC-ATGGAA
128 CCCTCGTTC-GGTCTGA-TCTTAGACTA-GGAA
* * ** * *
34438184 TGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTACGGGTGCTCAGCCAGCCAGAGAGGC
1 TGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCGGAGAGGC
* * *
34438249 AGAATGCGCAAGCTGGGGATCAGCTCGATCCCCCCTACGTGCTACCTATCCTACAGTCGCAACCC
66 AGAATGCGCAAGCTGGGGATCAGCTCGATCCCCCCTACGTGCTATCGATCCTACAGTCGAAACCC
34438314 TCCGTTCGGTCTGATCTTAGACTAGGAA
131 T-CGTTCGGTCTGATCTTAGACTAGGAA
*
34438342 TGAACTCCGTATGC
1 TGAACTCCCTATGC
34438356 TTAGACTGGG
Statistics
Matches: 248, Mismatches: 69, Indels: 26
0.72 0.20 0.08
Matches are distributed among these distances:
156 1 0.00
157 27 0.11
158 189 0.76
159 31 0.12
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (157 bp):
TGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCGGAGAGGC
AGAATGCGCAAGCTGGGGATCAGCTCGATCCCCCCTACGTGCTATCGATCCTACAGTCGAAACCC
TCGTTCGGTCTGATCTTAGACTAGGAA
Found at i:34438370 original size:26 final size:26
Alignment explanation
Indices: 34438329--34438381 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34438319 TCGGTCTGAT
34438329 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
34438355 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
34438381 C
1 C
34438382 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:34438759 original size:26 final size:26
Alignment explanation
Indices: 34438707--34438759 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
34438697 CTGGTTCGAT
*
34438707 CTTAGACTGGGAATGAACTTCGCATG
1 CTTAGACTGGGAATGAACTTCCCATG
34438733 CTTAGACAT-GGAATGAAC-TCCCTATG
1 CTTAGAC-TGGGAATGAACTTCCC-ATG
34438759 C
1 C
34438760 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 3 0.12
26 20 0.83
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCCCATG
Found at i:34438919 original size:26 final size:26
Alignment explanation
Indices: 34438890--34438942 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34438880 CCGATCTGAT
34438890 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
**
34438916 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
34438942 C
1 C
34438943 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:34439652 original size:26 final size:26
Alignment explanation
Indices: 34439616--34439666 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
34439606 CTCAAAATCT
*
34439616 TAGACTGGGAATGAACTCCGTATGCA
1 TAGACAGGGAATGAACTCCGTATGCA
34439642 TAGACAGGGAATGAACTCCGTATGC
1 TAGACAGGGAATGAACTCCGTATGC
34439667 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.20, G:0.27, T:0.22
Consensus pattern (26 bp):
TAGACAGGGAATGAACTCCGTATGCA
Found at i:34440144 original size:26 final size:26
Alignment explanation
Indices: 34440115--34440167 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
34440105 CTGGTCCGAT
34440115 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
34440141 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
34440167 C
1 C
34440168 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34442047 original size:26 final size:26
Alignment explanation
Indices: 34442011--34442063 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
34442001 CTAGTCCGAT
34442011 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
34442037 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
34442063 C
1 C
34442064 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:34443264 original size:26 final size:26
Alignment explanation
Indices: 34443242--34443296 Score: 69
Period size: 24 Copynumber: 2.2 Consensus size: 26
34443232 TTTTTCACGA
34443242 TTTTTGAAACTTTTTGTGGTTCAAGAG
1 TTTTTGAAA-TTTTTGTGGTTCAAGAG
* *
34443269 TTTTTTAAATTTTTTTGG-T-AAGAG
1 TTTTTGAAATTTTTGTGGTTCAAGAG
34443293 TTTT
1 TTTT
34443297 GTCCCCAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
24 9 0.35
25 1 0.04
26 8 0.31
27 8 0.31
ACGTcount: A:0.22, C:0.04, G:0.18, T:0.56
Consensus pattern (26 bp):
TTTTTGAAATTTTTGTGGTTCAAGAG
Found at i:34444458 original size:26 final size:26
Alignment explanation
Indices: 34444420--34444472 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34444410 GTTTCAAAAT
34444420 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
34444446 CTTAGACAT-GGAATGAACTTCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
34444472 C
1 C
34444473 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34445171 original size:26 final size:26
Alignment explanation
Indices: 34445142--34445194 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
34445132 CCGATCCAAA
34445142 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
34445168 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
34445194 C
1 C
34445195 CTAAGGCAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:34445501 original size:159 final size:158
Alignment explanation
Indices: 34445243--34445619 Score: 391
Period size: 159 Copynumber: 2.4 Consensus size: 158
34445233 AGGCCGGAGC
* * * * * * * * * *
34445243 GGCAAAATGTGCAAGCC-AGGATCAGCCTGATCCCCCTTGCGTGCTGTCGATCCTGTTGCCGCAA
1 GGCAGAATGCGCAAGCCGAGGATCGGCCCGGTCCCCCCTACGTGCTGTCGATCCCGCTGCCACAA
* * * **** * *
34445307 CCCTCGGTCTGGTTCAATCTTAGACTGGGAATGAACTCCGTATGCCAAAGTCAACCCACGAAACG
66 GCCTCAGTCTGGCTGGGGCTTAGACTGGGAATGAACTCCCTATGCCAAAGCCAACCCACGAAACG
* *
34445372 AGCATACGGGCACTGAGCC-GATCAGAGA
131 AGCATACGGGCACTCAGCCGGCT-AGAGA
* ** *
34445400 GGCATAATGCGCAAGCCGAGGATCGGCCCGGTCACCCTTTACGTGTTGTCGATCCCGCTGCCACA
1 GGCAGAATGCGCAAGCCGAGGATCGGCCCGGTC-CCCCCTACGTGCTGTCGATCCCGCTGCCACA
* *
34445465 AGCCTCAGTCTGGCTGGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACTCACGAAA
65 AGCCTCAGTCTGGCTGGGGCTTAGAC-TGGGAATGAACTCCCTATGCCAAAGCCAACCCACGAAA
* * * *
34445529 CGAGCATGCGGGCGCTCAGTCGGCTGGAGA
129 CGAGCATACGGGCACTCAGCCGGCTAGAGA
* * * *
34445559 GGCAGAATGTGCAAGCCGAGGATCTGCCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGCC
1 GGCAGAATGCGCAAGCCGAGGATCGGCCCGGTCCCCCCTACGTGCTGTCGATCCCGCTGCC
34445620 GTAACCCTCG
Statistics
Matches: 180, Mismatches: 36, Indels: 7
0.81 0.16 0.03
Matches are distributed among these distances:
157 15 0.08
158 35 0.19
159 127 0.71
160 3 0.02
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.19
Consensus pattern (158 bp):
GGCAGAATGCGCAAGCCGAGGATCGGCCCGGTCCCCCCTACGTGCTGTCGATCCCGCTGCCACAA
GCCTCAGTCTGGCTGGGGCTTAGACTGGGAATGAACTCCCTATGCCAAAGCCAACCCACGAAACG
AGCATACGGGCACTCAGCCGGCTAGAGA
Found at i:34445671 original size:26 final size:26
Alignment explanation
Indices: 34445642--34445694 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
34445632 CCGATTAGAT
34445642 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
34445668 CTTATACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
34445694 C
1 C
34445695 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34456486 original size:159 final size:158
Alignment explanation
Indices: 34455901--34456478 Score: 560
Period size: 159 Copynumber: 3.6 Consensus size: 158
34455891 GGCTCAAAAT
* * *
34455901 CTTAGACTGGGAATGAACTCCGTATGCCTATGCCAACCCATGAAACGAGCATGCGGGCACTCAG-
1 CTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCACTCAGC
* * * * *
34455965 CTGGCCGGAGAGGCAGAATGCACAAGCCGGGGATCGACTCAGTCCCCC-CTGTGTTCTGTCGATC
66 CT-GCCGAAGAGGCATAATGCACAAGCCGAGGATCGACCCAGTCCCCCTCTGTGTGCTGTCGATC
* * * **
34456029 CTGCTGCCGCAACCCTCAATCTGGTCTGAT
130 CCGCTGCCACAACCCTCAGTCTGG-CTGGG
** * * * * * *
34456059 CTTAGACTGGGAATGAACTCTGTATGCATAAGTCAACCCACGAAATGAGCATGCGGGCGCTGAGT
1 CTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCACTCAGC
* ** * * * * **
34456124 C-GACTGAAGAGGCATAATGTGCAAGCCGAAGATTGGCCCGGTCCCCCTCTGTGTGCTACCGATC
66 CTG-CCGAAGAGGCATAATGCACAAGCCGAGGATCGACCCAGTCCCCCTCTGTGTGCTGTCGATC
* *
34456188 CCGCTGCCACAACCCTCGGTCTGGTTGGGG
130 CCGCTGCCACAACCCTCAGTCTGGCT-GGG
* * * * *
34456218 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCACTAAG
1 CTTAGAC-TGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCACTCAG
* * * * ** *
34456282 CCGGCCGAAGAGGCATAATGCGCAAGTC-AGGGAT-TAGCCCAGTCCCCCTCTACGTGCTGTCGG
65 CCTGCCGAAGAGGCATAATGCACAAGCCGA-GGATCGA-CCCAGTCCCCCTCTGTGTGCTGTCGA
*
34456345 TCCCACTGCCACAACCCTCAGTCTGGCTAGGG
128 TCCCGCTGCCACAACCCTCAGTCTGGCT-GGG
* * **
34456377 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGTGCTCAG
1 CTTAGAC-TGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCACTCAG
*
34456441 CCTGCC-AGAGAGGCAAAATGCACAAGCCGAGGATCGAC
65 CCTGCCGA-AGAGGCATAATGCACAAGCCGAGGATCGAC
34456479 TCGGTCCCTC
Statistics
Matches: 342, Mismatches: 67, Indels: 21
0.80 0.16 0.05
Matches are distributed among these distances:
157 1 0.00
158 92 0.27
159 245 0.72
160 4 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCACTCAGC
CTGCCGAAGAGGCATAATGCACAAGCCGAGGATCGACCCAGTCCCCCTCTGTGTGCTGTCGATCC
CGCTGCCACAACCCTCAGTCTGGCTGGG
Found at i:34456522 original size:317 final size:317
Alignment explanation
Indices: 34455901--34456497 Score: 684
Period size: 318 Copynumber: 1.9 Consensus size: 317
34455891 GGCTCAAAAT
* * *
34455901 CTTAGACTGGGAATGAACTCCGTATGCCTATGCCAACCCATGAAACGAGCATGCGGGCACTCAGC
1 CTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCACTAAGC
* * * * * ** * *
34455966 TGGCCGGAGAGGCAGAATGCACAAGCCGGGGATCGACTCAGTCCCCCCTGTGTTCTGTCGATCCT
66 CGGCCGAAGAGGCAGAATGCACAAGCCAGGGATAGACCCAGTCCCCCCTACGTGCTGTCGATCCC
* * * ** *
34456031 GCTGCCGCAACCCTCAATCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCATAAGTCAAC
131 ACTGCCACAACCCTCAATCTGGTCTGAGCTTAGACTGGGAATGAACTCCCTATGCATAAGCCAAC
* * * * * * ** * *
34456096 CCACGAAATGAGCATGCGGGCGCTGAGTCGACTGAAGAGGCATAATGTGCAAGCCGAAGATTGGC
196 CCACGAAACGAGCATGCAGGCGCTCAGCCGACAGAAGAGGCAAAATGCACAAGCCGAAGATCGAC
**
34456161 CCGGTCCCCCTCTGTGTGCTACCGATCCCGCTGCCACAACCCTCGGTCTGGTTGGGG
261 CCGGTCCCCCTCTGCATGCTACCGATCCCGCTGCCACAACCCTCGGTCTGGTTGGGG
* * *
34456218 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCACTAAG
1 CTTAGAC-TGGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCACTAAG
* * * *
34456282 CCGGCCGAAGAGGCATAATGCGCAAGTCAGGGATTAG-CCCAGTCCCCCTCTACGTGCTGTCGGT
65 CCGGCCGAAGAGGCAGAATGCACAAGCCAGGGA-TAGACCCAGTCCCCC-CTACGTGCTGTCGAT
* * *
34456346 CCCACTGCCACAACCCTCAGTCTGG-CTAGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAG
128 CCCACTGCCACAACCCTCAATCTGGTCT-GAGCTTAGAC-TGGGAATGAACTCCCTATGCATAAG
* * * *
34456409 CCAACCCACGAAACGAGCGTGCAGGTGCTCAGCCTGCCAG-AGAGGCAAAATGCACAAGCCGAGG
191 CCAACCCACGAAACGAGCATGCAGGCGCTCAGCC-GACAGAAGAGGCAAAATGCACAAGCCGAAG
* *
34456473 ATCGACTCGGTCCCTC-CTGCATGCT
255 ATCGACCCGGTCCCCCTCTGCATGCT
34456498 GTTGATCCTG
Statistics
Matches: 228, Mismatches: 46, Indels: 12
0.80 0.16 0.04
Matches are distributed among these distances:
317 102 0.45
318 122 0.54
319 4 0.02
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (317 bp):
CTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCACTAAGC
CGGCCGAAGAGGCAGAATGCACAAGCCAGGGATAGACCCAGTCCCCCCTACGTGCTGTCGATCCC
ACTGCCACAACCCTCAATCTGGTCTGAGCTTAGACTGGGAATGAACTCCCTATGCATAAGCCAAC
CCACGAAACGAGCATGCAGGCGCTCAGCCGACAGAAGAGGCAAAATGCACAAGCCGAAGATCGAC
CCGGTCCCCCTCTGCATGCTACCGATCCCGCTGCCACAACCCTCGGTCTGGTTGGGG
Found at i:34456541 original size:317 final size:316
Alignment explanation
Indices: 34455899--34456561 Score: 681
Period size: 317 Copynumber: 2.1 Consensus size: 316
34455889 TTGGCTCAAA
* *
34455899 ATCTTAGACTGGGAATGAACTCCGTATGCCTATGCCAACCCATGAAACGAGCATGCGGGCACTCA
1 ATCTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCACTAA
* * * * * ** *
34455964 GCTGGCCGGAGAGGCAGAATGCACAAGCCGGGGATCGACTCAGTCCCCCCTGTGTTCTGTCGATC
65 GCCGGCCGAAGAGGCAGAATGCACAAGCCAGGGATAGACCCAGTCCCCCCTACGTGCTGTCGATC
** * * ** *
34456029 CTGCTGCCGCAACCCTCAATCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCATAAGTCA
130 CCACTGCCACAACCCTCAATCTGGTCTGAGCTTAGACTGGGAATGAACTCCCTATGCATAAGCCA
* * * * * * ** *
34456094 ACCCACGAAATGAGCATGCGGGCGCTGAGTCGACTGAAGAGGCATAATGTGCAAGCCGAAGATTG
195 ACCCACGAAACGAGCATGCAGGCGCTCAGCCGACAGAAGAGGCAAAATGCACAAGCCGAAGATCG
* ** * **
34456159 GCCCGGTCCCCCTCTGTGTGCTACCGATCCCGCTGCCACAACCCTCGGTCTGGTTGG
260 ACCCGGTCCCCCTCTGCATGCTACCGATCCCGCTGCCACAACCCTCGATCCAGTTGG
** * * * *
34456216 GGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCACTAA
1 ATCTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCACTAA
* * * *
34456281 GCCGGCCGAAGAGGCATAATGCGCAAGTCAGGGATTAG-CCCAGTCCCCCTCTACGTGCTGTCGG
65 GCCGGCCGAAGAGGCAGAATGCACAAGCCAGGGA-TAGACCCAGTCCCCC-CTACGTGCTGTCGA
* * *
34456345 TCCCACTGCCACAACCCTCAGTCTGG-CTAGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAA
128 TCCCACTGCCACAACCCTCAATCTGGTCT-GAGCTTAGAC-TGGGAATGAACTCCCTATGCATAA
* * * *
34456408 GCCAACCCACGAAACGAGCGTGCAGGTGCTCAGCCTGCCAG-AGAGGCAAAATGCACAAGCCGAG
191 GCCAACCCACGAAACGAGCATGCAGGCGCTCAGCC-GACAGAAGAGGCAAAATGCACAAGCCGAA
* * *** * * **
34456472 GATCGACTCGGTCCCTC-CTGCATGCTGTTGATCCTGCTGTCGTAACCCTCGATCCAGTCT-G
255 GATCGACCCGGTCCCCCTCTGCATGCTACCGATCCCGCTGCCACAACCCTCGATCCAGT-TGG
34456533 ATCTTAGACTGAGAATGAACTCCGTATGC
1 ATCTTAGACTG-GAATGAACTCCGTATGC
34456562 TTAGACTGGG
Statistics
Matches: 277, Mismatches: 61, Indels: 16
0.78 0.17 0.05
Matches are distributed among these distances:
316 2 0.01
317 148 0.53
318 123 0.44
319 4 0.01
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (316 bp):
ATCTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCACTAAG
CCGGCCGAAGAGGCAGAATGCACAAGCCAGGGATAGACCCAGTCCCCCCTACGTGCTGTCGATCC
CACTGCCACAACCCTCAATCTGGTCTGAGCTTAGACTGGGAATGAACTCCCTATGCATAAGCCAA
CCCACGAAACGAGCATGCAGGCGCTCAGCCGACAGAAGAGGCAAAATGCACAAGCCGAAGATCGA
CCCGGTCCCCCTCTGCATGCTACCGATCCCGCTGCCACAACCCTCGATCCAGTTGG
Found at i:34456576 original size:26 final size:26
Alignment explanation
Indices: 34456535--34456590 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
34456525 CCAGTCTGAT
34456535 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
* *
34456561 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
34456587 CTTA
1 CTTA
34456591 AGTGAACCCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:34456954 original size:26 final size:26
Alignment explanation
Indices: 34456917--34456968 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
34456907 CGATCCAATT
*
34456917 TTAGACTGGTAATGAACTCTGTATGC
1 TTAGACTGGTAATGAACTCCGTATGC
34456943 TTAGACAT-GTAATGAACTCCGTATGC
1 TTAGAC-TGGTAATGAACTCCGTATGC
34456969 CTAAGCTAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.33
Consensus pattern (26 bp):
TTAGACTGGTAATGAACTCCGTATGC
Found at i:34457674 original size:196 final size:193
Alignment explanation
Indices: 34457270--34457979 Score: 771
Period size: 196 Copynumber: 3.7 Consensus size: 193
34457260 TCCGGTTAGG
* * * * **
34457270 GCTTAGACATGGAATGAACTCCATATGCCTAGGTCAACCCATGAAACGAGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
* * * * * * * * *
34457335 TCGGC-CG-GAGGCAAAATGTGCAAGCCGGGGCTCGGCTCGATCCCCCCTGCGTGTTGCCGATCC
66 CCGGCTGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCT-GGTCCCCCCTGCGTGCTACCGATCC
* * * * * * * *
34457398 TGCTACTGGTCCTACTACCGTAACCTTCGGTCTGGTCTGATCTTAGATTAGGAATGAACTCCATA
130 TGCT-GTGGT-CTGCTACCGTAACCCTCGGTCCGGTCCGATATTAGACTGGGAATGAACTCCATA
34457463 T
193 T
* *
34457464 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
* * *
34457529 CCGGCTGGAGAGGCAGAATGCGTAAGCCGAGGATCGGCCTAGTCCCCCCTACGTGCTACCGATCC
66 CCGGCTGGAGAGGCAGAATGCGCAAGCCGAGGATCGG-CTGGTCCCCCCTGCGTGCTACCGATCC
* * * *
34457594 TGCTGTTGGTGCTGCTACCGCAACCCTCGATCCGATCCGATATTAGACTGGGAATGAACTCTATA
130 TGCTG-TGGT-CTGCTACCGTAACCCTCGGTCCGGTCCGATATTAGACTGGGAATGAACTCCATA
34457659 T
193 T
* * *
34457660 GCTTGGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
* * * * * * *
34457725 CCGACCGGAGGGGTAGAATGCGTAAGTCGAGGATCGACCTGGTCCCCCCCTGCGTGCTACCGA--
66 CCGGCTGGAGAGGCAGAATGCGCAAGCCGAGGATCG-GCTGGT-CCCCCCTGCGTGCTACCGATC
* *
34457788 -T-C-----T-TGCTACCGTAACCCTTGGTCCGGTCCGATATTAGACTGGGAATGAACTCCGTAT
129 CTGCTGTGGTCTGCTACCGTAACCCTCGGTCCGGTCCGATATTAGACTGGGAATGAACTCCATAT
* *
34457845 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAT
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
* * * * * *
34457910 CC-GATCAGAGAGGCAGAATGCACAAGCTGGGGATCGGCTCGGTCCCCCCTGCGTGCTATCGATC
66 CCGGCT-GGAGAGGCAGAATGCGCAAGCCGAGGATCGGCT-GGTCCCCCCTGCGTGCTACCGATC
34457974 CTGCTG
129 CTGCTG
34457980 CCGTAACCCT
Statistics
Matches: 432, Mismatches: 70, Indels: 32
0.81 0.13 0.06
Matches are distributed among these distances:
184 20 0.05
185 135 0.31
187 2 0.00
188 1 0.00
193 1 0.00
194 62 0.14
195 1 0.00
196 190 0.44
197 20 0.05
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.21
Consensus pattern (193 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
CCGGCTGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCTGGTCCCCCCTGCGTGCTACCGATCCT
GCTGTGGTCTGCTACCGTAACCCTCGGTCCGGTCCGATATTAGACTGGGAATGAACTCCATAT
Found at i:34457850 original size:26 final size:26
Alignment explanation
Indices: 34457821--34457872 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
34457811 CGGTCCGATA
34457821 TTAGAC-TGGGAATGAACTCCGTATGC
1 TTAGACAT-GGAATGAACTCCGTATGC
*
34457847 TTAGACATGGAATGAACTCTGTATGC
1 TTAGACATGGAATGAACTCCGTATGC
34457873 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (26 bp):
TTAGACATGGAATGAACTCCGTATGC
Found at i:34457930 original size:185 final size:184
Alignment explanation
Indices: 34457605--34458022 Score: 572
Period size: 185 Copynumber: 2.3 Consensus size: 184
34457595 GCTGTTGGTG
* * * * *
34457605 CTGCTACCGCAACCCTCGATCCGATCCGATATTAGACTGGGAATGAACTCTATATGCTTGGACAT
1 CTGCTACCGTAACCCTTGGTCCGATCCGATATTAGACTGGGAATGAACTCCATATGCTTAGACAT
* *
34457670 GGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCGACCGGAG
66 GGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGACCAGAG
* * **
34457735 GGGTAGAATGCGTAAG-TCGAGGATCGACCT-GGTCCCCCCCTGCGTGCTACCGATC
131 AGGCAGAATGCACAAGCT-GAGGATCG-CCTCGGT-CCCCCCTGCGTGCTACCGATC
* * *
34457790 TTGCTACCGTAACCCTTGGTCCGGTCCGATATTAGACTGGGAATGAACTCCGTATGCTTAGACAT
1 CTGCTACCGTAACCCTTGGTCCGATCCGATATTAGACTGGGAATGAACTCCATATGCTTAGACAT
* *
34457855 GGAATGAAC-TCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCATCCGATCAGA
66 GGAATGAACTTC-GTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGACCAGA
* * *
34457919 GAGGCAGAATGCACAAGCTGGGGATCGGCTCGGTCCCCCCTGCGTGCTATCGATC
130 GAGGCAGAATGCACAAGCTGAGGATCGCCTCGGTCCCCCCTGCGTGCTACCGATC
* * * *
34457974 CTGCTGCCGTAACCCTTGGTCCCATCCGATCTTAGATTGGGAATGAACT
1 CTGCTACCGTAACCCTTGGTCCGATCCGATATTAGACTGGGAATGAACT
34458023 TTGTATGCCT
Statistics
Matches: 205, Mismatches: 25, Indels: 7
0.86 0.11 0.03
Matches are distributed among these distances:
184 67 0.33
185 137 0.67
186 1 0.00
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.22
Consensus pattern (184 bp):
CTGCTACCGTAACCCTTGGTCCGATCCGATATTAGACTGGGAATGAACTCCATATGCTTAGACAT
GGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGACCAGAG
AGGCAGAATGCACAAGCTGAGGATCGCCTCGGTCCCCCCTGCGTGCTACCGATC
Found at i:34465003 original size:26 final size:26
Alignment explanation
Indices: 34464965--34465017 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
34464955 GGCTCAAAAT
34464965 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
34464991 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
34465017 C
1 C
34465018 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34465506 original size:26 final size:26
Alignment explanation
Indices: 34465466--34465517 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
34465456 CGATCCAATT
*
34465466 TTAGACTAGGAATGAACTTCGTATGC
1 TTAGACTAGGAATGAACTCCGTATGC
* * *
34465492 TTAGACTGGGGATGAGCTCCGTATGC
1 TTAGACTAGGAATGAACTCCGTATGC
34465518 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTCCGTATGC
Found at i:34465861 original size:26 final size:26
Alignment explanation
Indices: 34465832--34465884 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
34465822 CTGATCTGAT
34465832 CTTAGAC-TAGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCTGTATG
34465858 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCTGTATG
34465884 C
1 C
34465885 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCTGTATG
Found at i:34466221 original size:159 final size:158
Alignment explanation
Indices: 34465857--34466357 Score: 386
Period size: 158 Copynumber: 3.2 Consensus size: 158
34465847 AACTCTGTAT
* * **
34465857 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACAAAACAAGCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCAAGCGCTCAA
* * * * *
34465922 CCGGCTGGAGAGGCAGAATGCACAAGTTGGGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCC
66 CCGGCTGAAAAGGCAGAATGCACAAGCTAGGGATCGACCCGATCCCCCCTACGTGCTGTCGATCC
**
34465987 TGCCACCACAACCCTCGGTCTGATCTAA
131 CACCACCACAACCCTCGGTCTGATCTAA
* * ** * *
34466015 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAAGCGTTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCAAGCGCTCA
* * ** * * * *
34466079 GCCGG-TCGAAAAGGCATAATGCGTAAGCTAGGGATCGTCCTGGTCCCCCTCTACGTGCTGTCGG
65 ACCGGCT-GAAAAGGCAGAATGCACAAGCTAGGGATCGACCCGATCCCCC-CTACGTGCTGTCGA
** * **
34466143 TCCCACTGCCACAACCCTCGAT-TCGA-CTGGG
128 TCCCACCACCACAACCCTCGGTCT-GATCT-AA
* * ** *
34466174 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAAC--GCATGCGGGCACTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCAAGCGCTCAA
* * * * * * * ** * * * *
34466237 CCGACCGGAGAGGCTGAATGCGCAAGCTGGGGATCGACTGGGTCCCCCCTGCATGCTGTCAATCC
66 CCGGCTGAAAAGGCAGAATGCACAAGCTAGGGATCGACCCGATCCCCCCTACGTGCTGTCGATCC
* ** ** *
34466302 TACTGCCGTAACCCTCGGTCTGATCTGA
131 CACCACCACAACCCTCGGTCTGATCTAA
* * *
34466330 TCTTAGAC-TAGGAATGAAGTTCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
34466358 TTAAACTGGG
Statistics
Matches: 267, Mismatches: 66, Indels: 22
0.75 0.19 0.06
Matches are distributed among these distances:
155 1 0.00
156 53 0.20
157 50 0.19
158 91 0.34
159 71 0.27
160 1 0.00
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCAAGCGCTCAA
CCGGCTGAAAAGGCAGAATGCACAAGCTAGGGATCGACCCGATCCCCCCTACGTGCTGTCGATCC
CACCACCACAACCCTCGGTCTGATCTAA
Found at i:34467019 original size:26 final size:26
Alignment explanation
Indices: 34466990--34467042 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34466980 GTTGACTTAG
34466990 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
34467016 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
34467042 G
1 G
34467043 ATCAGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:34467527 original size:26 final size:26
Alignment explanation
Indices: 34467491--34467543 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
34467481 CTTGGCTTAG
34467491 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
34467517 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
34467543 G
1 G
34467544 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:34469554 original size:26 final size:26
Alignment explanation
Indices: 34469515--34469567 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
34469505 GTTGACTTAG
*
34469515 GCATACGGAATTCATCCCCAGTCTAA
1 GCATACAGAATTCATCCCCAGTCTAA
* * *
34469541 GCATACAGAGTTCATTCTCAGTCTAA
1 GCATACAGAATTCATCCCCAGTCTAA
34469567 G
1 G
34469568 ATCAGACCGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAATTCATCCCCAGTCTAA
Found at i:34469983 original size:159 final size:159
Alignment explanation
Indices: 34469616--34469985 Score: 348
Period size: 159 Copynumber: 2.3 Consensus size: 159
34469606 GCACGAAGGG
* * * ** *
34469616 GGGACCGGGCCGATCCCCAGCTTGGGCATTCTGCCTC-TCTGGTCGGCTGAGTGCCCGCATGCCC
1 GGGACCAGACCGATCCCCAGCTTGCGCATTCTGCCTCTTC-GGTCGGCTGAGCACCCGCACGCCC
* * * * ** *
34469680 ATTTCGTGGGTTGGCTTAGGCATAGATAGTTCATTCCATGTGTAAGCCACAATTGGACTGAGGGT
65 ATTTCGTGGGTTAGCTTAGACATAGAGAGTTCATTCCATGTCTAAGCCACAACCGAACTGAGGGT
* * * * *
34469745 TGTAGCAGTGGGATTGACAGCATGTAGAGG
130 TGTAGCAGCGGGACTGACAGCACGTAAAGA
* ** ** * ** * * * * *
34469775 GGGATCAGGTCGATCCCTGGCTTGTGCATTCTATCTCTCCGGCCAGCTGAGCACCTGCACGCCCG
1 GGGACCAGACCGATCCCCAGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGCACCCGCACGCCCA
* * * *
34469840 TTTTGTGGGTTAGCTTAGACATAGCGAGTTCATTCCATGTCTAAGCCCCAGCCGAACTGAGGGTT
66 TTTCGTGGGTTAGCTTAGACATAGAGAGTTCATTCCATGTCTAAGCCACAACCGAACTGAGGGTT
* * *
34469905 GTGGCAGCGGGACTGGCCGCACGTAAAGA
131 GTAGCAGCGGGACTGACAGCACGTAAAGA
* *
34469934 GGTACC-GAACCGATCCCCAGCTTGCGCATTATGCCTCTTCGGTCGGCTGAGC
1 GGGACCAG-ACCGATCCCCAGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGC
34469986 GCTCGTTTCG
Statistics
Matches: 161, Mismatches: 48, Indels: 4
0.76 0.23 0.02
Matches are distributed among these distances:
158 1 0.01
159 159 0.99
160 1 0.01
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.25
Consensus pattern (159 bp):
GGGACCAGACCGATCCCCAGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGCACCCGCACGCCCA
TTTCGTGGGTTAGCTTAGACATAGAGAGTTCATTCCATGTCTAAGCCACAACCGAACTGAGGGTT
GTAGCAGCGGGACTGACAGCACGTAAAGA
Found at i:34470045 original size:26 final size:26
Alignment explanation
Indices: 34470009--34470061 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
34469999 GTTGGCGTAG
34470009 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
34470035 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
34470061 G
1 G
34470062 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:34470589 original size:13 final size:13
Alignment explanation
Indices: 34470571--34470596 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
34470561 GGATGCTAAC
34470571 TCCTGATTTTCAG
1 TCCTGATTTTCAG
34470584 TCCTGATTTTCAG
1 TCCTGATTTTCAG
34470597 GGTCAACCAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.23, G:0.15, T:0.46
Consensus pattern (13 bp):
TCCTGATTTTCAG
Found at i:34475907 original size:159 final size:159
Alignment explanation
Indices: 34475632--34475929 Score: 339
Period size: 159 Copynumber: 1.9 Consensus size: 159
34475622 GATCGAGCCA
* * * * *
34475632 ATCCCTGGCTTGCGCATTCTACCTCTCCAGCCAGCTGAGCGCCCGCACGCTCGTTTCATGGGTTG
1 ATCCCAGGCTTGCACATTATACCTCTCCAGCCAGCTCAGCGCCCGCACGCTCATTTCATGGGTTG
* ** * * * *** ***
34475697 GCTTAGGTGTAGGGAGTTAATTCCATGTTTAAGTCCCAGTTAGACCAAGGGTTGTGGCAGCAGGA
66 ACTTAGGCATACGGAGTTAATTCCATGTCTAAGTCCAAACCAGACCAAGGGTTACAGCAGCAGGA
34475762 TCGACAGCAGATAGAGGGGGACCGGGCAG
131 TCGACAGCAGATAGAGGGGGACCGGGCAG
* * *
34475791 ATCCCAGGCTTGCACATTATGCCTCTCCAGTCGGCTCAGCGCCCGCACGCTCATTTCATGGGTTG
1 ATCCCAGGCTTGCACATTATACCTCTCCAGCCAGCTCAGCGCCCGCACGCTCATTTCATGGGTTG
* * ** *
34475856 ACTTAGGCATACGGAGTTCATTCCCA-GTCTCAGAT-CAAACCAGACTGAGGGTTACAGCAGTAG
66 ACTTAGGCATACGGAGTTAATT-CCATGTCTAAG-TCCAAACCAGACCAAGGGTTACAGCAGCAG
34475919 GATCGACAGCA
129 GATCGACAGCA
34475930 CACAAGCGGG
Statistics
Matches: 112, Mismatches: 25, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
159 108 0.96
160 4 0.04
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.23
Consensus pattern (159 bp):
ATCCCAGGCTTGCACATTATACCTCTCCAGCCAGCTCAGCGCCCGCACGCTCATTTCATGGGTTG
ACTTAGGCATACGGAGTTAATTCCATGTCTAAGTCCAAACCAGACCAAGGGTTACAGCAGCAGGA
TCGACAGCAGATAGAGGGGGACCGGGCAG
Found at i:34476424 original size:26 final size:26
Alignment explanation
Indices: 34476388--34476440 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34476378 GTTGACTTAG
34476388 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
34476414 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
34476440 G
1 G
34476441 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:34476722 original size:159 final size:159
Alignment explanation
Indices: 34476510--34476916 Score: 473
Period size: 159 Copynumber: 2.6 Consensus size: 159
34476500 GATCTTCGAT
* * * *
34476510 TTGCGCATTCTGCCTCTCCGGCCGACTGAGCGCCCGTATGCCCGTTTTATGGGTTGGCTTGGGCA
1 TTGCGCATTCTGCCTCTCCGGCCGACTGAGCGCCCGTACGCTCGTTTCATGGGTTGGCTTAGGCA
* ** ** * * * *
34476575 TACAGAGTTCATTCCATGTCTAAGACCCA-ATCGGAATGAGGGTTGTGTCAGCGGGACCGGCAGC
66 TACAGAGTTCATTCCATGTCTAAGA-CCAGACCGGAACAAGGGTTACGGCAGCAGGACCGACAAC
* *
34476639 ACGCA-GAGGGGGACTGGGCCGGTCCCTGGC
130 ACGCAGGA-GGGGACTGGGCCGATCCCCGGC
* * * * *
34476669 TTGCGCATTATGCCTCTTCGGCCGACTCAGCACCCGTACGCTCGTTTCATGGGTTGACTTATGG-
1 TTGCGCATTCTGCCTCTCCGGCCGACTGAGCGCCCGTACGCTCGTTTCATGGGTTGGCTTA-GGC
* * *
34476733 ATAC-GAAGTTCATTCCCA-GTCTAAGATCAGACCGGACCAAGGGTTACGGCAGCAGGATCGACA
65 ATACAG-AGTTCATT-CCATGTCTAAGACCAGACCGGAACAAGGGTTACGGCAGCAGGACCGACA
*
34476796 ACACGTAGGAGGGGACTGGGCCGATCCCCGGC
128 ACACGCAGGAGGGGACTGGGCCGATCCCCGGC
* * ** *
34476828 TTGCGCATTCTGGCTCTCCGACCGACTGAGCGCCCGTACATTCGTTTCATGGGTTAGCTTAGGCA
1 TTGCGCATTCTGCCTCTCCGGCCGACTGAGCGCCCGTACGCTCGTTTCATGGGTTGGCTTAGGCA
34476893 TACAGAGTTCATTCCATGTCTAAG
66 TACAGAGTTCATTCCATGTCTAAG
34476917 CATACGGAGT
Statistics
Matches: 206, Mismatches: 34, Indels: 16
0.80 0.13 0.06
Matches are distributed among these distances:
158 8 0.04
159 190 0.92
160 8 0.04
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.24
Consensus pattern (159 bp):
TTGCGCATTCTGCCTCTCCGGCCGACTGAGCGCCCGTACGCTCGTTTCATGGGTTGGCTTAGGCA
TACAGAGTTCATTCCATGTCTAAGACCAGACCGGAACAAGGGTTACGGCAGCAGGACCGACAACA
CGCAGGAGGGGACTGGGCCGATCCCCGGC
Found at i:34476920 original size:26 final size:26
Alignment explanation
Indices: 34476890--34476942 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34476880 GTTAGCTTAG
34476890 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
34476916 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
34476942 G
1 G
34476943 TTTTGAGTCA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:34477636 original size:26 final size:26
Alignment explanation
Indices: 34477600--34477652 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34477590 GTTCGCCTAG
34477600 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
34477626 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
34477652 G
1 G
34477653 ATCGAACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:34478175 original size:26 final size:26
Alignment explanation
Indices: 34478139--34478191 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
34478129 GTTGGCTTAG
34478139 GCATATGGAGTTCATT-CCAGGTCTAA
1 GCATATGGAGTTCATTCCCA-GTCTAA
34478165 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
34478191 G
1 G
34478192 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:34478899 original size:26 final size:26
Alignment explanation
Indices: 34478870--34478922 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34478860 GTTGACTTAG
34478870 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
34478896 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
34478922 G
1 G
34478923 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:34479592 original size:26 final size:26
Alignment explanation
Indices: 34479555--34479607 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34479545 GTTGACTTAG
*
34479555 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
*
34479581 GCATACAAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
34479607 G
1 G
34479608 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACAAAGTTCATCCCCAGTCTAA
Found at i:34480083 original size:25 final size:25
Alignment explanation
Indices: 34480054--34480102 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
34480044 GTTGGCTTAG
*
34480054 GCATACGGAGTTCATTCCATGTCTT
1 GCATACAGAGTTCATTCCATGTCTT
*
34480079 GCATACAGAGTTCATTCCCTGTCT
1 GCATACAGAGTTCATTCCATGTCT
34480103 AAGATTGAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.20, C:0.27, G:0.18, T:0.35
Consensus pattern (25 bp):
GCATACAGAGTTCATTCCATGTCTT
Found at i:34480279 original size:26 final size:26
Alignment explanation
Indices: 34480249--34480301 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
34480239 GATGACTTAG
*
34480249 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
34480275 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
34480301 G
1 G
34480302 ATCGAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:34481277 original size:26 final size:26
Alignment explanation
Indices: 34481247--34481299 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
34481237 GTTGACTTAG
*
34481247 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTATAA
* *
34481273 GCATATGGAGTTCATTCCCAGTATAA
1 GCATACGGAGTTCATCCCCAGTATAA
34481299 G
1 G
34481300 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTATAA
Found at i:34481774 original size:25 final size:26
Alignment explanation
Indices: 34481740--34481791 Score: 81
Period size: 25 Copynumber: 2.0 Consensus size: 26
34481730 GTTGGCTTAG
34481740 GCATACGGAGTTC-TT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCAT-TCTAA
34481765 GCATACGGAGTTCATTCCCATTCTAA
1 GCATACGGAGTTCATTCCCATTCTAA
34481791 G
1 G
34481792 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 13 0.52
26 8 0.32
27 4 0.16
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCATTCTAA
Found at i:34483523 original size:26 final size:26
Alignment explanation
Indices: 34483485--34483537 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
34483475 GGCTCAAAAT
34483485 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
34483511 CTTAGACAT-GGAATGACCTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
34483537 C
1 C
34483538 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:34485065 original size:26 final size:26
Alignment explanation
Indices: 34485027--34485079 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
34485017 CCGGTTTGAT
*
34485027 CTTATACTAGGAATGAAC-TCTGTATG
1 CTTAGACTAGGAATGAACTTC-GTATG
*
34485053 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTTCGTATG
34485079 C
1 C
34485080 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.32
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTTCGTATG
Found at i:34485477 original size:486 final size:488
Alignment explanation
Indices: 34484834--34485760 Score: 1218
Period size: 486 Copynumber: 1.9 Consensus size: 488
34484824 TGCGTGCTAC
* * *
34484834 CGATCTCGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTAGGCATA
1 CGATCCCGCTACCACAACCCTCGGTCCAACTGGGGCTTAGACATGGAATGAACTCCCTAGGCATA
* * * *
34484899 AGCCAACCCACAAAACGGGCATGCGGGCACTCAACCGGTCGGAGAGGTAGAATGCGTAAGTCGGG
66 AGCCAACCCACAAAACGGGCATACGGGCACTCAACCAGTCGGAGAGGCAGAATGCGCAAGTCGGG
* * * *
34484964 GATCGACCCGATCCCTCCTATGTGCTGTCGATCCTGCTG-CTGCAACCCCCAGTCCGGTTTGATC
131 GATCGACCCGATCCCCCCTACGTGCTGTCGATCCTACTGTC-GCAACCCCCAGTCCGATTTGATC
* * *
34485028 TTATACTAGGAATGAACTCTGTATGCTT-AGACTGGGAATGAACTTCGTATGCCTAAG-TCAACC
195 TTAGACTAGGAATGAACTCCGTATGATTGA-ACTGGGAATGAACTTCGTATGCCTAAGCT-AACC
* * * * * * * * * *
34485091 CATGAAATGAGCGTACGGGCGCTCAATCGACTGGAGAGGCTGATCGAAGAGGCATAATGAGAAAG
258 AACGAAATAAGCATACAGGCGCTCAACCGACCGGAGAGGCCGACCGAAAAGGCATAATGAGAAAG
* * * * * * *
34485156 TCGGGGATCAA-CCC-CTGCGTGTTGTCGATCCCGCTGCCGCTCTTGCTGCCACAACCCTCGGTC
323 CCGGGGATCAACCCCTCTGCGTGCTATCGATCCCACTGCCGATCCTGCTACCACAACCCTCGGTC
*
34485219 C-GACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTGAGCCAACCGGAGAGGCATAATGCGT
388 CAG-CTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCGGAGAGGCATAATGCGT
34485283 AAGTCAGGGATCGGCTCGGTCCCCTTCCATGTGCTGT
452 AAGTCAGGGATCGGCTCGGTCCCCTTCCATGTGCTGT
* *
34485320 CGATCCCGCTACCACAACCCTCGGTCCAACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTA
1 CGATCCCGCTACCACAACCCTCGGTCCAACTGGGGCTTAGACATGGAATGAACTCCCTAGGCATA
* * * ** *
34485385 AGCCAACCCACGAAATGGGCGTACGGGCACTCAGTCAGTTGGAGAGGCAGAATGCGCAAGTCGGG
66 AGCCAACCCACAAAACGGGCATACGGGCACTCAACCAGTCGGAGAGGCAGAATGCGCAAGTCGGG
* * * * * * *
34485450 GATTGACCCGGTCCCCCCTGCGTGCTGTCGATCCTACTGTCGCAAGCCTCGGTCTGATTTGATCT
131 GATCGACCCGATCCCCCCTACGTGCTGTCGATCCTACTGTCGCAACCCCCAGTCCGATTTGATCT
* * *
34485515 TAGACTGGGGATGAACTCCGTATGATTGAACTGGGGATGAACTTCGTATGCCTAAGCTAACCAAC
196 TAGACTAGGAATGAACTCCGTATGATTGAACTGGGAATGAACTTCGTATGCCTAAGCTAACCAAC
* * * *
34485580 GAAATAAGCATACAGGCGCTCAACCGGCCGGAGAGGCCGGCCGAAAAGGCATAATGCGCAAGCCG
261 GAAATAAGCATACAGGCGCTCAACCGACCGGAGAGGCCGACCGAAAAGGCATAATGAGAAAGCCG
34485645 GGGATCAATCTGGTCCCCCTCTGCGTGCTATCGATCCCACTGCCGATCCTGCTACCACAACCCTC
326 GGGATCAA-------CCCCTCTGCGTGCTATCGATCCCACTGCCGATCCTGCTACCACAACCCTC
*
34485710 GGTCCAGCTGGGGCTTTGACATGGAATGAACTCCGTATGCCTAAGCCAACC
384 GGTCCAGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
34485761 CACAAAATGA
Statistics
Matches: 373, Mismatches: 55, Indels: 17
0.84 0.12 0.04
Matches are distributed among these distances:
486 280 0.75
487 3 0.01
494 3 0.01
495 86 0.23
496 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (488 bp):
CGATCCCGCTACCACAACCCTCGGTCCAACTGGGGCTTAGACATGGAATGAACTCCCTAGGCATA
AGCCAACCCACAAAACGGGCATACGGGCACTCAACCAGTCGGAGAGGCAGAATGCGCAAGTCGGG
GATCGACCCGATCCCCCCTACGTGCTGTCGATCCTACTGTCGCAACCCCCAGTCCGATTTGATCT
TAGACTAGGAATGAACTCCGTATGATTGAACTGGGAATGAACTTCGTATGCCTAAGCTAACCAAC
GAAATAAGCATACAGGCGCTCAACCGACCGGAGAGGCCGACCGAAAAGGCATAATGAGAAAGCCG
GGGATCAACCCCTCTGCGTGCTATCGATCCCACTGCCGATCCTGCTACCACAACCCTCGGTCCAG
CTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCGGAGAGGCATAATGCGTAAGT
CAGGGATCGGCTCGGTCCCCTTCCATGTGCTGT
Found at i:34486260 original size:527 final size:526
Alignment explanation
Indices: 34485313--34486903 Score: 1638
Period size: 527 Copynumber: 3.1 Consensus size: 526
34485303 CCCCTTCCAT
* *
34485313 GTGCTGTCGATCCCGCTACCACAACCCTCGGTCCAACTGGGGCTTAGACATGGAATGAACTCCCT
1 GTGCTGTCGGTCCCGCTACCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCT
* * * *
34485378 ATGCCTAAGCCAACCCACGAAATGGGCGTACGGGCACTCAG-TCAGTTGGAGAGGCAGAATGCGC
66 ATGCCTAAGCCAACCCATGAAACGGGCGTACGGGCACTCAGCT-GGTCGGAGAGGCAGAATGCGC
* * *
34485442 AAGTCGGGGATTGACCCGGTCCCCCCTGCGTGCTGTCGATCCTACTGTCGCAAGCCTCGG-TCTG
130 AAGTCGGGGATCGACCCGGT-CCCCCTGCGTGCTGTCGATCCTACTGTCGCAACCCTCGGTTCAG
* * * * *
34485506 ATTTGATCTTAGACTGGGGATGAACTCCGTATGATT-GAACTGGGGATGAACTTCGTATGCCTAA
194 -TCTGATCTTAGATTGGGAATGAACTCCGTATGCTTAG-ACTGGGGATGAACTCCGTATGCCTAA
* * ** * * *
34485570 G-CTAACCAACGAAATAAGCATACAGGCGCTCAACCGGCCGGAGAGGCCGGCCGAAAAGGCATAA
257 GTC-AACCCACGAAACAAGCATACAGGCGCTCAACCAACCAGAGAGGCCGACCGAAAAGGAATAA
* * ** * *
34485634 TGCGCAAGCCGGGGATCAATCTGGTCCCCCTCTGCGTGCTATCGATCCCACTGCCGATCCTGCTA
321 TACGCAAGCCGGGGATCAACCCAGTCCCCCTCTACGTGCTATAGATCCCACTGCCGATCCTGCTA
*
34485699 CCACAACCCTCGGTCCAGCTGGGGCTTTGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAC
386 CCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAC
* * *** *
34485764 AAAATGAGCGTTCGGGTGCTCAGCCTG-CCGGAGAGGCAGAATGCACAAGCTGGGGATCAGCCCG
451 AAAATGAGCGTACCGACACTCAGCC-GACCGGAGAGGCAGAATGCACAAGCTGGGGATCAGCCAG
*
34485828 GTCCCCCTCTGC
515 GTCCCCCTCTAC
* *
34485840 GTGCTGTCGGTCCCGCTACCACAACCATCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCT
1 GTGCTGTCGGTCCCGCTACCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCT
* * *
34485905 ATGCCTAAGCCAACCCATGAAACGGGTGTACGGGCACTCAGCTGGTCGGAGAGGCAGAATCCCCA
66 ATGCCTAAGCCAACCCATGAAACGGGCGTACGGGCACTCAGCTGGTCGGAGAGGCAGAATGCGCA
* * * *** * *
34485970 AGACGAGGATCGACCCAGTCCGTTTGCATGCTGTCGATCCTACTGTCGTAACCCTCGGTTCAGTC
131 AGTCGGGGATCGACCCGGTCCCCCTGCGTGCTGTCGATCCTACTGTCGCAACCCTCGGTTCAGTC
*
34486035 TGATCTTAGATTGGGAATGAACTCCGTATGCTTAGGCTGGGGATGAACTCCGTAAT-CCTAAGTC
196 TGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGT-ATGCCTAAGTC
* ** ** * * *
34486099 AACCCACGAAACGAGTGTATGGGCGCTCAGCCAATCAGAGAGGCCGACCGAAGAGGAATAATACG
260 AACCCACGAAACAAGCATACAGGCGCTCAACCAACCAGAGAGGCCGACCGAAAAGGAATAATACG
* * * *** * * * *
34486164 CAAGCCGGGGATTAACCCAGTCCCCCTGTACGTGCTGTAGATCCTGTTCGTCGGTCTTGCTGCCA
325 CAAGCCGGGGATCAACCCAGTCCCCCTCTACGTGCTATAGATCCCACT-GCCGATCCTGCTACCA
** * * * * *
34486229 CAACCCTTTGTTCGGTTGGGGCTTAGACATGGAATGTACTCCGTATGCCTAAGCCAACCCACGAA
389 CAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAA
* * * * ** *
34486294 ATGAGCGTACCGACACTGAGTCGATCGGAGAGGCATAATGCGTAAGCTGGGGATCGGCCAGGTCC
454 ATGAGCGTACCGACACTCAGCCGACCGGAGAGGCAGAATGCACAAGCTGGGGATCAGCCAGGTCC
34486359 CCCTCTAC
519 CCCTCTAC
* **
34486367 GTGCTGTCAGTCCCGCTACCACAACCCTCGGTTTGACTGGGGCTTAGACATGGAATGAACTCCCT
1 GTGCTGTCGGTCCCGCTACCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCT
* * * * *
34486432 ATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAGCCGATCGAAGAGGCAGAATGCGCA
66 ATGCCTAAGCCAACCCATGAAACGGGCGTACGGGCACTCAGCTGGTCGGAGAGGCAGAATGCGCA
* * * * * * *
34486497 AGTCGGGGATCGGCCTGGTTCCCCCTGCGTGCTGTCGATCCTGCTATCGCAACCCTCGATGCGGT
131 AGTCGGGGATCGACCCGG-TCCCCCTGCGTGCTGTCGATCCTACTGTCGCAACCCTCGGTTCAGT
* *
34486562 CCGATCTTAGATTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTC
195 CTGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTC
* ** * * * *
34486627 AACCCACAAAATGAGCGTAC-GG-G--C-ACTCAACC------GCC--CGGAAAA-GCATAATTC
260 AACCCACGAAACAAGCATACAGGCGCTCAAC-CAACCAGAGAGGCCGACCGAAAAGGAATAATAC
* * * * * * * ** * * * *
34486678 GCAAGCCAGGGATCAGCCCGGTCCCCCTCTGCATGCTGTTGATCCTGCTACCGGTCTTGCTGCCA
324 GCAAGCCGGGGATCAACCCAGTCCCCCTCTACGTGCTATAGATCCCACTGCCGATCCTGCTACCA
* * * * *
34486743 CAACCCTCGAT-CTGACTAGGGTTTAGAAATGGAATGAACTCCGTATGCCTAAGCCAACCCAC--
389 CAACCCTCGGTCCAG-CTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAA
** *** * * * *
34486805 AA--A-CGTATGGGGGCTCAGCCGACCGAAGAGGTAGAATGCATAAG-TCGGGGATCGATCC-GG
453 AATGAGCGTACCGACACTCAGCCGACCGGAGAGGCAGAATGCACAAGCT-GGGGATC-AGCCAGG
*
34486865 TCCCCCT-TGC
516 TCCCCCTCTAC
* * *
34486875 GTGCTGTCGATCCTGCTACCGCAACCCTC
1 GTGCTGTCGGTCCCGCTACCACAACCCTC
34486904 AATCCGGTCC
Statistics
Matches: 890, Mismatches: 161, Indels: 45
0.81 0.15 0.04
Matches are distributed among these distances:
508 28 0.03
509 45 0.05
510 3 0.00
512 2 0.00
513 2 0.00
514 64 0.07
515 47 0.05
516 5 0.01
518 3 0.00
523 1 0.00
524 5 0.01
526 174 0.20
527 399 0.45
528 112 0.13
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.20
Consensus pattern (526 bp):
GTGCTGTCGGTCCCGCTACCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCT
ATGCCTAAGCCAACCCATGAAACGGGCGTACGGGCACTCAGCTGGTCGGAGAGGCAGAATGCGCA
AGTCGGGGATCGACCCGGTCCCCCTGCGTGCTGTCGATCCTACTGTCGCAACCCTCGGTTCAGTC
TGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCA
ACCCACGAAACAAGCATACAGGCGCTCAACCAACCAGAGAGGCCGACCGAAAAGGAATAATACGC
AAGCCGGGGATCAACCCAGTCCCCCTCTACGTGCTATAGATCCCACTGCCGATCCTGCTACCACA
ACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAAT
GAGCGTACCGACACTCAGCCGACCGGAGAGGCAGAATGCACAAGCTGGGGATCAGCCAGGTCCCC
CTCTAC
Found at i:34486603 original size:26 final size:26
Alignment explanation
Indices: 34486567--34486619 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
34486557 GCGGTCCGAT
*
34486567 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
34486593 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
34486619 C
1 C
34486620 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:34486707 original size:343 final size:345
Alignment explanation
Indices: 34486249--34486992 Score: 905
Period size: 350 Copynumber: 2.1 Consensus size: 345
34486239 TTCGGTTGGG
* * * *
34486249 GCTTAGACAT-GGAATGTACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACCGACACTGA
1 GCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACCGACACTCA
** * * * * ** *
34486313 GTCGATCGGAGAGGCATAATGCGTAAGCTGGGGATCGGCCAGGTCCCCCTCT-A-C-G-TG-CTG
65 ACCGACCGGAAAAGCATAATGCGCAAGCCAGGGATCAGCCAGGTCCCCCTCTCAGCTGTTGACTG
* * * *
34486373 -T-CAGTCCCGCTACCACAACCCTCGGTTTGACTGGGGCTTAGACATGGAATGAACTCCCTATGC
130 CTACAGTCCCGCTACCACAACCCTCGATCTGACTAGGGCTTAGAAATGGAATGAACTCCCTATGC
* * * *
34486436 CTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAGCCGATCGAAGAGGCAGAATGCGCAAGTC
195 CTAAGCCAACCCA-CAAAC--GCATG-GGG-GCTCAGCCGACCGAAGAGGCAGAATGCACAAGTC
* * *
34486501 GGGGATCG-GCCTGGTTCCCCC-TGCGTGCTGTCGATCCTGCTATCGCAACCCTCGATGCGGTCC
255 GGGGATCGAGCC-GG-TCCCCCTTGCGTGCTGTCGATCCTGCTACCGCAACCCTCAATCCGGTCC
*
34486564 GATCTTAGATTGGGAATGAACTCCATAT
318 GATCTTAGATTGGGAATGAACTCCACAT
* * *
34486592 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTACGGGCACTCAA
1 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACCGACACTCAA
* * *
34486657 CCGCCCGGAAAAGCATAATTCGCAAGCCAGGGATCAGCCCGGTCCCCCTCTGCATGCTGTTGATC
66 CCGACCGGAAAAGCATAATGCGCAAGCCAGGGATCAGCCAGGTCCCCCTCT-CA-GCTGTTGA--
* ** * * *
34486722 CTGCTACCGGTCTTGCTGCCACAACCCTCGATCTGACTAGGGTTTAGAAATGGAATGAACTCCGT
127 CTGCTA-CAGTCCCGCTACCACAACCCTCGATCTGACTAGGGCTTAGAAATGGAATGAACTCCCT
* * *
34486787 ATGCCTAAGCCAACCCACAAACGTATGGGGGCTCAGCCGACCGAAGAGGTAGAATGCATAAGTCG
191 ATGCCTAAGCCAACCCACAAACGCATGGGGGCTCAGCCGACCGAAGAGGCAGAATGCACAAGTCG
*
34486852 GGGATCGATCCGGTCCCCCTTGCGTGCTGTCGATCCTGCTACCGCAACCCTCAATCCGGTCCGAT
256 GGGATCGAGCCGGTCCCCCTTGCGTGCTGTCGATCCTGCTACCGCAACCCTCAATCCGGTCCGAT
*
34486917 CTTAGATTGGGAATGAACTCCGCAT
321 CTTAGATTGGGAATGAACTCCACAT
* *
34486942 GCTTAGATTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
1 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGC
34486993 ATGCAGGGCG
Statistics
Matches: 341, Mismatches: 45, Indels: 23
0.83 0.11 0.06
Matches are distributed among these distances:
342 1 0.00
343 95 0.28
345 1 0.00
347 1 0.00
348 1 0.00
349 8 0.02
350 153 0.45
351 5 0.01
352 6 0.02
353 1 0.00
354 4 0.01
355 65 0.19
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.20
Consensus pattern (345 bp):
GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACCGACACTCAA
CCGACCGGAAAAGCATAATGCGCAAGCCAGGGATCAGCCAGGTCCCCCTCTCAGCTGTTGACTGC
TACAGTCCCGCTACCACAACCCTCGATCTGACTAGGGCTTAGAAATGGAATGAACTCCCTATGCC
TAAGCCAACCCACAAACGCATGGGGGCTCAGCCGACCGAAGAGGCAGAATGCACAAGTCGGGGAT
CGAGCCGGTCCCCCTTGCGTGCTGTCGATCCTGCTACCGCAACCCTCAATCCGGTCCGATCTTAG
ATTGGGAATGAACTCCACAT
Found at i:34486946 original size:26 final size:26
Alignment explanation
Indices: 34486917--34486969 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34486907 CCGGTCCGAT
34486917 CTTAGATTGGGAATGAACTCCGCATG
1 CTTAGATTGGGAATGAACTCCGCATG
* *
34486943 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGATTGGGAATGAACTCCGCATG
34486969 C
1 C
34486970 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTCCGCATG
Found at i:34488060 original size:159 final size:158
Alignment explanation
Indices: 34487647--34488085 Score: 450
Period size: 159 Copynumber: 2.8 Consensus size: 158
34487637 CACAACGTAT
* * * * *
34487647 GCTTAGACATGAAATGAACTCCATATGCTTAAGCCAACCCACGAAACAAGCGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCATAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCAG
** * * * * **
34487712 CCGATCAGAGAGGTAGAATGCGCAAGCCGAGGATCGACCCAATCCCCCCTACGTGCTGTCGATCA
66 CCGGCCGGAGAGGTAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTACCGATCA
* ** *
34487777 TGTTGCTGCAACCCTCGGTCTGGTCCAA
131 TGTTACCACAACCCTCGGTCTGCTCCAA
* * * * *
34487805 TCTCAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGTGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCATAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCA
* * * * * * * * * *
34487869 GCCGGCTGAAGAGGCATAATGCACAAGACGGGGATCGGCTCGGTCCCCCTCTGCGTGCTACCGGT
65 GCCGGCCGGAGAGGTAGAATGCGCAAGCCGGGGATCGACCCGATCCCCC-CTGCGTGCTACCGAT
* ***
34487934 CATGTTACCACAACCCTCGGTTTGACT-GGG
129 CATGTTACCACAACCCTCGGTCTG-CTCCAA
* * * * *
34487964 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCATATGCATAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCAG
**
34488029 CCGGCCGGAGAGGTAGAATTTGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCT
66 CCGGCCGGAGAGGTAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCT
34488086 GTCGATCCTG
Statistics
Matches: 221, Mismatches: 56, Indels: 8
0.78 0.20 0.03
Matches are distributed among these distances:
157 1 0.00
158 96 0.43
159 122 0.55
160 2 0.01
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCATATGCATAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCAG
CCGGCCGGAGAGGTAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTACCGATCA
TGTTACCACAACCCTCGGTCTGCTCCAA
Found at i:34488164 original size:26 final size:26
Alignment explanation
Indices: 34488123--34488175 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34488113 TCAGTCTGAT
34488123 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
34488149 CTTAGACTAGGG-ATGAACTCTGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
34488175 C
1 C
34488176 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34488506 original size:170 final size:170
Alignment explanation
Indices: 34488148--34488590 Score: 475
Period size: 170 Copynumber: 2.6 Consensus size: 170
34488138 AACTCCGTAT
* *
34488148 GCTTAGACTAGGG-ATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCA
1 GCTTAGACT-GGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCA
* * * * * * *
34488212 GTCGGTTGGAGAGGCATAATGCGTAAGCCGAGGATCAGCCCAGTCCCCTCAGCATGCTGTCGATC
65 GCCGATCGGAGAGGCATAATGCGCAAGCTGAGGATCGGCCCAGTCCCCCCAGCATGCTGTCGATC
* * *
34488277 ACACTACCAGTCCTGCTACCACAACGCTCAGTCCGGCTGGG
130 ACACTACCAGTCCTGCTACAACAACCCTCAGTCCGGCTGGA
* * * *
34488318 GCGTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGTGTGC-GGCGCTCA
1 GCTTAGAC-TGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCA
* * *
34488381 GCCGATCGGAGAGGCAGAATGCGCAAGCTGAGGATCGGCCCAGTCCCACCCTGTATGCTG-CAGA
65 GCCGATCGGAGAGGCATAATGCGCAAGCTGAGGATCGGCCCAGTCCC-CCCAGCATGCTGTC-GA
* *** * * * *
34488445 TC-CTGCTACTTTTCTTGCTACAACAACCCTCGGTTCGATCT-GA
128 TCAC-ACTACCAGTCCTGCTACAACAACCCTCAGTCCG-GCTGGA
* * * *
34488488 TCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACTCACAAAATGAGCGTGCGGGCGCTGAG
1 GCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* * * *
34488553 CCAACCGGAGAGGCATAATGCGCAAGTTGGGGATCGGC
66 CCGATCGGAGAGGCATAATGCGCAAGCTGAGGATCGGC
34488591 TCGGTTCGCC
Statistics
Matches: 225, Mismatches: 40, Indels: 15
0.80 0.14 0.05
Matches are distributed among these distances:
169 53 0.24
170 128 0.57
171 44 0.20
ACGTcount: A:0.25, C:0.28, G:0.28, T:0.20
Consensus pattern (170 bp):
GCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAG
CCGATCGGAGAGGCATAATGCGCAAGCTGAGGATCGGCCCAGTCCCCCCAGCATGCTGTCGATCA
CACTACCAGTCCTGCTACAACAACCCTCAGTCCGGCTGGA
Found at i:34488842 original size:26 final size:26
Alignment explanation
Indices: 34488806--34488858 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
34488796 CCGATTCGAT
34488806 CTTAGACTGGGAATGAACTACGTATG
1 CTTAGACTGGGAATGAACTACGTATG
** *
34488832 CTTAGACTGGGGTTGAACTCCGTATG
1 CTTAGACTGGGAATGAACTACGTATG
34488858 C
1 C
34488859 CTAAGTCCAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:34489284 original size:159 final size:159
Alignment explanation
Indices: 34488992--34489517 Score: 464
Period size: 159 Copynumber: 3.3 Consensus size: 159
34488982 GGTCCTGTTG
*
34488992 CCACAACCCTCGGTCC-G-ACTGGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCC
1 CCACAACCCTCGGTCCGGTAC--GAGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCC
* * * * * * *
34489055 ACAAAACAAGCGTGTGGGTGCTCAACCGGCCGAAAAGGCAGAATGTGCAAGTC-GAGGATCAACT
64 ACAAAACGAGCGTGCGGGTGCTCAGCCGGCCGGAGAGGCAGAATGCGCAAGCCAG-GGATCAACT
** **
34489119 CAGTCCCCC-CTTGCGTGCTGTTGATCTTGCTA
128 CAGTCCCCCTC-TGCGTGCTGCCGATCCCGCTA
* * * *
34489151 CCACAACCCTCGGTTCGGTCCGATCTTA-A-ATTGGGAATGAACTCTGTATGCCTAAGTCAACCC
1 CCACAACCCTCGGTCCGGTACGAGCTTAGACA-T-GGAATGAACTCTGTATGCCTAAGCCAACCC
* * * * * * * *
34489214 TCGAAACGAGCGTGCGGGCGCTGAGCCAGCCGGAGAGGCATAATGCGTAAGCCAGGGATC-AGTC
64 ACAAAACGAGCGTGCGGGTGCTCAGCCGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCAACTC
* * * *
34489278 TGGTCCCTCTCTGCGTGCTGCCGGTCCCGCTG
129 -AGTCCCCCTCTGCGTGCTGCCGATCCCGCTA
* * ** *
34489310 CCACAACCCTCGGTCCGGTAGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACTCAC
1 CCACAACCCTCGGTCCGGTACGAGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCAC
* * * * *
34489375 AAAACGGGCGTGCGGGTGCTCAGTCGGCCAGAGAGGCAGAATGCGCAAGCCAAGGATCGA-TC-G
66 AAAACGAGCGTGCGGGTGCTCAGCCGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCAACTCAG
* * ** *
34489438 ATCCCCC-CAGCATGCTGCCGATCCTACTG
131 -TCCCCCTCTGCGTGCTGCCGATCCCGCTA
* * *
34489467 CCACAACCTTCAGTCCGGT-CTGATGC-TAGACTTGGAATGAACTCTGTATGC
1 CCACAACCCTCGGTCCGGTAC-GA-GCTTAGACATGGAATGAACTCTGTATGC
34489518 TTAGACTGGG
Statistics
Matches: 293, Mismatches: 61, Indels: 28
0.77 0.16 0.07
Matches are distributed among these distances:
157 59 0.20
158 12 0.04
159 214 0.73
160 6 0.02
161 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (159 bp):
CCACAACCCTCGGTCCGGTACGAGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCAC
AAAACGAGCGTGCGGGTGCTCAGCCGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCAACTCAG
TCCCCCTCTGCGTGCTGCCGATCCCGCTA
Found at i:34489518 original size:25 final size:26
Alignment explanation
Indices: 34489485--34489541 Score: 73
Period size: 26 Copynumber: 2.3 Consensus size: 26
34489475 TTCAGTCCGG
*
34489485 TCTG-ATGC-TAGACTTGGAATGAAC
1 TCTGTATGCTTAGACTGGGAATGAAC
*
34489509 TCTGTATGCTTAGACTGGGGATGAAC
1 TCTGTATGCTTAGACTGGGAATGAAC
*
34489535 TCCGTAT
1 TCTGTAT
34489542 CCGTAAGTCA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
24 4 0.14
25 4 0.14
26 20 0.71
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.32
Consensus pattern (26 bp):
TCTGTATGCTTAGACTGGGAATGAAC
Found at i:34490150 original size:26 final size:26
Alignment explanation
Indices: 34490114--34490166 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34490104 TTCAGTCGAT
34490114 CTTAGACTGGGAATGAACTCCGGATG
1 CTTAGACTGGGAATGAACTCCGGATG
* *
34490140 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGGATG
34490166 C
1 C
34490167 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.21, G:0.30, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGGATG
Found at i:34490486 original size:26 final size:26
Alignment explanation
Indices: 34490448--34490500 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34490438 CCGGTCCGAT
*
34490448 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
34490474 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
34490500 C
1 C
34490501 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34490867 original size:159 final size:159
Alignment explanation
Indices: 34490473--34490891 Score: 434
Period size: 159 Copynumber: 2.6 Consensus size: 159
34490463 AACTCTGTAT
34490473 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCGCTCAG
* * * * * * * * * *
34490538 TCGGTCGGAGAGGTAGAATGCACAAGCTGGGGATCGGCCTGGTCCCACCCTACGTGCTGTCGGTC
66 CCGGTCGAAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGATCCCACCCTACGTGCTGCCGATC
* * **
34490603 CTGCTATCGTAACCCTCGATCTGGTCCGA
131 CCGCTACCACAACCCTCGATCTGGTCCGA
* * * * * * *
34490632 TCTTAGAC-TGAGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGCATGCGGGCGTTGA
1 GCTTAGACATG-GAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCGCTCA
* * * * * ** **
34490696 GCC-ATCCAAAGAGGCATAATGTGCAAGCCGAGAATCGGCCCGATCCC-CTTTTGTGTGCTGCCG
65 GCCGGT-CGAAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGATCCCAC-CCTACGTGCTGCCG
* * *
34490759 ATCCCGCTACCACAACCCTCGGTCTGG-CTGGG
128 ATCCCGCTACCACAACCCTCGATCTGGTC-CGA
* *
34490791 GCTTAGACATGGAATGAACTTCC-TATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAAC-TCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCGCTCA
*
34490855 GCCGGTCGAAGAGGCAGAATGCGTAAGCCGAGGATCG
65 GCCGGTCGAAGAGGCAGAATGCGCAAGCCGAGGATCG
34490892 ACCGGTTTCC
Statistics
Matches: 205, Mismatches: 48, Indels: 14
0.77 0.18 0.05
Matches are distributed among these distances:
158 5 0.02
159 194 0.95
160 6 0.03
ACGTcount: A:0.24, C:0.28, G:0.28, T:0.19
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCGCTCAG
CCGGTCGAAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGATCCCACCCTACGTGCTGCCGATC
CCGCTACCACAACCCTCGATCTGGTCCGA
Found at i:34491718 original size:26 final size:26
Alignment explanation
Indices: 34491667--34491719 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
34491657 GGCTCAAAAT
* *
34491667 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
34491693 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
34491719 C
1 C
34491720 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:34492852 original size:26 final size:26
Alignment explanation
Indices: 34492816--34492868 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34492806 TCAGTCTGAT
34492816 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
34492842 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
34492868 C
1 C
34492869 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34493346 original size:26 final size:26
Alignment explanation
Indices: 34493317--34493369 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
34493307 CCGGTTTGAT
34493317 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
34493343 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
34493369 C
1 C
34493370 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34493639 original size:355 final size:342
Alignment explanation
Indices: 34493000--34493981 Score: 964
Period size: 355 Copynumber: 2.8 Consensus size: 342
34492990 CCAGTCCGAT
* * * * *
34493000 CTTAGACTGGAAATGAACTCCGTATGCATAAGTCAACCCATGAAATGAGCGTACGGGTGCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTG-TTAGC
* * * *
34493065 CGACCGAAGAGGCATAATGTGCAAGACGAGGATCAGCCCGGTCCCCCTCTGCTTGCTGTCGATCC
65 TGACCGGAGAGGCATAATATGCAAGACGAGGATCAGCCCGATCCCCCTCTGCTTGCTGTCGATCC
* *
34493130 CGCTGCCATAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCTTACGCCTAAGCCAA
130 CGCTGCCATAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCGTACGCCTAAGCCAA
* * * * * *
34493195 CCCACGAAACGGGCGTGCGGGTGCTCAGCCGATCAGAGAGACAGAATGCACAAGCTGGGGATCGG
195 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGATCAGAAAGACAGAATACACAAGCCGGGGATCGA
* * * * **
34493260 CCCGATCCCCACTGCGTGCTGTCGATCCTGCTGCCGCAAACCTCGATCCGGTTTGATCTTAGACT
260 CCCGATCCCCACTGCATGCTGTCGATCCTACTACCGCAAACCTCGATCCGATCCGATCTTAGACT
34493325 GGGAATGAACTCCGTATG
325 GGGAATGAACTCCGTATG
* * * *
34493343 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCGACGAAACGAGCGTGCGGGCGTTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGTT-AGC
*
34493408 TGACCGGAGAGGCATAATATGCAAG-CTGGGGATCAGCCCGATCCCCCTCTGTATGCTGTCGATC
65 TGACCGGAGAGGCATAATATGCAAGAC-GAGGATCAGCCCGATCCCCCTC----TGC--T---T-
* * * ** *
34493472 CCGCTGTCGATCCTGCTGCCATGACCTTCGATTTGGCTGGGGCTTAGACATGGAATGAACTCCGT
119 --GCTGTCGATCCCGCTGCCATAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCGT
* * * **
34493537 ATGCCTAAGCTAAGCCACGAAACGAGCGTGCGGGCGCTCAGCC-AGTC-GAAAAGGTAGAATACA
182 ACGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGA-TCAG-AAAGACAGAATACA
* * * * *
34493600 CAAGCCGGGGATCGATCCGGTCCCCCCTGCATGCTGTCGATCCTACTACCGCAACCCTCGGTCCG
245 CAAGCCGGGGATCGACCCGATCCCCACTGCATGCTGTCGATCCTACTACCGCAAACCTCGATCCG
*
34493665 ATCCGATCTTAGACTGGGAATGAACTCTGTATG
310 ATCCGATCTTAGACTGGGAATGAACTCCGTATG
*
34493698 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTTAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTG-TTAG
* * * * * * * *
34493762 CTGACCGGAGAGGTAGAATGCT-CAAG-CAGGGGATC-GACCTGATCCCCC-CTACGTGCTATCG
64 CTGACCGGAGAGGCATAAT-ATGCAAGAC-GAGGATCAG-CCCGATCCCCCTCTGCTTGCTGTCG
* * * ** * * *
34493823 ATCCTGCTGCCGTAACCCTC-AGTCCGA-TCCGATCATAGA-TTGGGAATGAACTCCGTATGCCT
126 ATCCCGCTGCCATAACCCTCGA-TCCGACT-GGGGCTTAGACAT-GGAATGAACTCCGTACGCCT
* * * * * * * * * *
34493885 AAGTCAACCCATGAAACTAGCTTGCGGGCGTTGAGCCGATC-GAAGAGGCATAATGCGCAAGCCG
188 AAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGATCAGAA-AGACAGAATACACAAGCCG
*
34493949 GGGATC-ACCCCGATCCCCCTCTGCATGCTGTCG
252 GGGATCGA-CCCGAT-CCCCACTGCATGCTGTCG
34493982 GTGCCACTAC
Statistics
Matches: 528, Mismatches: 84, Indels: 54
0.79 0.13 0.08
Matches are distributed among these distances:
341 6 0.01
342 110 0.21
343 114 0.22
345 1 0.00
347 3 0.01
349 1 0.00
350 2 0.00
352 1 0.00
354 4 0.01
355 282 0.53
356 4 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (342 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGTTAGCT
GACCGGAGAGGCATAATATGCAAGACGAGGATCAGCCCGATCCCCCTCTGCTTGCTGTCGATCCC
GCTGCCATAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCGTACGCCTAAGCCAAC
CCACGAAACGAGCGTGCGGGCGCTCAGCCGATCAGAAAGACAGAATACACAAGCCGGGGATCGAC
CCGATCCCCACTGCATGCTGTCGATCCTACTACCGCAAACCTCGATCCGATCCGATCTTAGACTG
GGAATGAACTCCGTATG
Found at i:34493710 original size:26 final size:26
Alignment explanation
Indices: 34493672--34493724 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34493662 CCGATCCGAT
*
34493672 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
34493698 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
34493724 C
1 C
34493725 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34493826 original size:184 final size:184
Alignment explanation
Indices: 34493513--34493882 Score: 501
Period size: 184 Copynumber: 2.0 Consensus size: 184
34493503 TTTGGCTGGG
* *
34493513 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAAGCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * *
34493578 CCAGTCGAAAAGGTAGAATACACAAGCCGGGGATCGATCCGGTCCCCCCTGCATGCTGTCGATCC
66 CCAGCCGAAAAGGTAGAATACACAAGCAGGGGATCGATCCGATCCCCCCTACATGCTATCGATCC
* * *
34493643 TACTACCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCTGTAT
131 TACTACCGCAACCCTCAGTCCGATCCGATCATAGACTGGGAATGAACTCCGTAT
* * *
34493697 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTTAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * *
34493762 -CTGACCGGAGAGGTAGAATGCTCAAGCAGGGGATCGA-CCTGATCCCCCCTACGTGCTATCGAT
66 CCAG-CCGAAAAGGTAGAATACACAAGCAGGGGATCGATCC-GATCCCCCCTACATGCTATCGAT
* * * *
34493825 CCTGCTGCCGTAACCCTCAGTCCGATCCGATCATAGATTGGGAATGAACTCCGTAT
129 CCTACTACCGCAACCCTCAGTCCGATCCGATCATAGACTGGGAATGAACTCCGTAT
34493881 GC
1 GC
34493883 CTAAGTCAAC
Statistics
Matches: 161, Mismatches: 23, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
183 4 0.02
184 157 0.98
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCAGCCGAAAAGGTAGAATACACAAGCAGGGGATCGATCCGATCCCCCCTACATGCTATCGATCC
TACTACCGCAACCCTCAGTCCGATCCGATCATAGACTGGGAATGAACTCCGTAT
Found at i:34494177 original size:501 final size:505
Alignment explanation
Indices: 34493345--34494298 Score: 1147
Period size: 501 Copynumber: 1.9 Consensus size: 505
34493335 TCCGTATGCT
* * *
34493345 TAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCGACGAAACGAGCGTGCGGGCGTTCAGCTG
1 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGTTCAGCCG
* * * * *
34493410 ACCGGAGAGGCATAATATGCAAGCTGGGGATCAGCCCGATCCCCCTCTGTATGCTGTCGATCCCG
66 ACCGAAGAGGCATAATACGCAAGCCGGGGATCACCCCGATCCCCCTCTGCATGCTGTCG----CG
* * * * *
34493475 CTGTCGATCCTGCTGCCATGACCTTCGATTTGGCTGGGGCTTAGACATGGAATGAACTCCGTATG
127 CTGTCCA-CCTAC-GCCA-GACCCTCGATCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATG
* * * * * *
34493540 CCTAAGCTAAGCCACGAAACGAGCGTGCGGGCGCTCAGCCAGTCGAAAAGGTAGAATACACAAGC
189 CCTAAGCCAACCCACGAAACAAACGTGCGGGCGCTCAGCCAGGCCAAAAGGTAGAATACACAAGC
* * * ** * *
34493605 CGGGGATCGATCCGGTCCCCCCTGCATGCTGTCGATCCTACTACCGCAACCCTCGGTCCGATCCG
254 CGGGGATCGACCCGATCCCCCCTACATGCTGTCGATCCTACTACCAAAACCCTCGATCAGATCCG
**
34493670 ATCTTAGACTGGGAATGAACTCTGTATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAA
319 ATCTTAGACTGGGAATGAACTCCATATGCTTAGAC-TGGGAATGAACTCCGTATGCC-AAGCCAA
* * * * * * *
34493734 CCCACGAAATGAGCGTGCGGGTGCTT-AGCTGACCGGAGAGGTA-GAATGCTCAAGCAGGGGATC
382 CACACGAAACGAGCGTGCGGGCG-TTCAGCCGACCAGAGAGGCATG-ATGCGCAAGCAGGGGATC
34493797 GACCTGATCCCCCCTACGTGCTATCGATCCTGCTGCCGTAACCCTCAGTCCGATCCGATCA
445 GACCTGATCCCCCCTACGTGCTATCGATCCTGCTGCCGTAACCCTCAGTCCGATCCGATCA
* * * * *
34493858 TAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACTAGCTTGCGGGCGTTGAGCCG
1 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGTTCAGCCG
* *
34493923 ATCGAAGAGGCATAATGCGCAAGCCGGGGATCACCCCGATCCCCCTCTGCATGCTGTCG-G-TG-
66 ACCGAAGAGGCATAATACGCAAGCCGGGGATCACCCCGATCCCCCTCTGCATGCTGTCGCGCTGT
*
34493985 CCA-CTAC-CACA-ACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAG
131 CCACCTACGC-CAGACCCTCGATCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAG
* * * * * *
34494047 CCAACCCATGAAACAAACGTGCGGGTGCTCAG-TAGGCCAGAGAGGTAGAATGCACAAGCTGGGG
195 CCAACCCACGAAACAAACGTGCGGGCGCTCAGCCAGGCCA-AAAGGTAGAATACACAAGCCGGGG
* * * * * *
34494111 ATCGACCCGATCCCCCTTACGTGCTGTCGATCTTGCTGCTAAAACCCTCGATCTAG-TCCGATCT
259 ATCGACCCGATCCCCCCTACATGCTGTCGATCCTACTACCAAAACCCTCGATC-AGATCCGATCT
* * * * * *
34494175 TAGATTGGGAATGAACTCCATATGTTTAGACTGGGGATGAACTCCGTTTGCCAAGTCAACACATG
323 TAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCAAGCCAACACACG
*
34494240 AAACGAGCGTGCGGGCGTTCAGCCGACCAGAGAGGCATGATGCGCAAGCCGGGGATCGA
388 AAACGAGCGTGCGGGCGTTCAGCCGACCAGAGAGGCATGATGCGCAAGCAGGGGATCGA
34494299 ACGGGTGGTA
Statistics
Matches: 373, Mismatches: 62, Indels: 25
0.81 0.13 0.05
Matches are distributed among these distances:
499 2 0.01
500 62 0.17
501 188 0.50
502 2 0.01
503 2 0.01
504 3 0.01
506 2 0.01
507 2 0.01
508 1 0.00
513 109 0.29
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.20
Consensus pattern (505 bp):
TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGTTCAGCCG
ACCGAAGAGGCATAATACGCAAGCCGGGGATCACCCCGATCCCCCTCTGCATGCTGTCGCGCTGT
CCACCTACGCCAGACCCTCGATCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGC
CAACCCACGAAACAAACGTGCGGGCGCTCAGCCAGGCCAAAAGGTAGAATACACAAGCCGGGGAT
CGACCCGATCCCCCCTACATGCTGTCGATCCTACTACCAAAACCCTCGATCAGATCCGATCTTAG
ACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCAAGCCAACACACGAAA
CGAGCGTGCGGGCGTTCAGCCGACCAGAGAGGCATGATGCGCAAGCAGGGGATCGACCTGATCCC
CCCTACGTGCTATCGATCCTGCTGCCGTAACCCTCAGTCCGATCCGATCA
Found at i:34494933 original size:26 final size:26
Alignment explanation
Indices: 34494896--34494947 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
34494886 GCTCAAAATA
34494896 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
*
34494922 TTAGACAT-GGAATGAACTCTGTATGC
1 TTAGAC-TGGGAATGAACTCCGTATGC
34494948 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:34495381 original size:159 final size:158
Alignment explanation
Indices: 34494920--34495382 Score: 508
Period size: 159 Copynumber: 2.9 Consensus size: 158
34494910 AACTCCGTAT
* * * *
34494920 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCGTTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAA
* * * *
34494985 CCGACCGGAGAGGTAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCCTGCGTGCTTTCAATCC
66 CCGATCGGAGAGGTAGAATGCACAAGCCGGGGATCGGCCCGGTCCCCCTTGCGTGC-TTCAATCC
*
34495050 TGCTTG-TGT-AACCCTCAGTCCGATCTGA
130 TGC-TGCTGTAAACCCTCAGTCCGAGCTGA
* * * *
34495078 TCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * *
34495142 ACCGATC-GATGAGGCATAACGCACAAGCCGGGGATCGACCCGGTCCCCCTCTGCGTGCTACCAG
65 ACCGATCGGA-GAGGTAGAATGCACAAGCCGGGGATCGGCCCGGTCCCCCT-TGCGTGCT-TCAA
* * *
34495206 TCCTGCTGC--CACAACCCTCAGTCTG-GCTGGG
127 TCCTGCTGCTGTA-AACCCTCAGTCCGAGCT-GA
* * * * ** *
34495237 GCTTAGACATGGAATGAACTCCCTATGCCTAAGTCAACCCATGAAACGGGCATGTAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAA
* * *
34495302 CCGATCGGAGAGGTAGAATGCATAAGCCGGGGATCGGCCCGGTCCCCCTTGCATGCTGTCGATCC
66 CCGATCGGAGAGGTAGAATGCACAAGCCGGGGATCGGCCCGGTCCCCCTTGCGTGCT-TCAATCC
34495367 TGCTGCTGTAAACCCT
130 TGCTGCTGTAAACCCT
34495383 TTGATCCAGT
Statistics
Matches: 249, Mismatches: 44, Indels: 23
0.79 0.14 0.07
Matches are distributed among these distances:
157 3 0.01
158 115 0.46
159 127 0.51
160 4 0.02
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAA
CCGATCGGAGAGGTAGAATGCACAAGCCGGGGATCGGCCCGGTCCCCCTTGCGTGCTTCAATCCT
GCTGCTGTAAACCCTCAGTCCGAGCTGA
Found at i:34496099 original size:316 final size:316
Alignment explanation
Indices: 34495526--34496256 Score: 1013
Period size: 316 Copynumber: 2.3 Consensus size: 316
34495516 GCATAATGCA
* * * * * *
34495526 CAAGTCGAGGATCGGCCCGATCACCCCTACGTGCTGTCGATCCTG-TTGATGCAACCCTCGGTCT
1 CAAGTCGGGGATCGGCCCGGTC-CCCCTGCGTGCTATCGATCCTGCTTGATGTAACCCTCGGTCC
* * * * ** * *
34495590 GATCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAGGTTAACCCACGAAATGAGTGTGTGGG
65 GATCTGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACAAGCGTGCGGG
* * * * * *
34495655 TGCTGAGTCGATCGAAGATGCATAATGCGCAAGCTGGGGATCGACCCGATCCCCCTCTGCGTGCT
130 TGCTGAATCGACCGAACAGGCATAATGCGCAAGCCGGGGATCGACCCGATCCCCCTCTGCGTGCC
* *
34495720 GTCGGTCCTGCTACCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCTCTATGCC
195 GCCGATCCTGCTACCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCTCTATGCC
34495785 TAAGCCAACCTTGAAACGGGCGTGCGGGTGCTCAGCCAA-TCGAAAAGGCAGAACGCG
260 TAAGCCAACCTTGAAACGGGCGTGCGGGTGCTCAGCCAACT-GAAAAGGCAGAACGCG
* * * *
34495842 CAAGTCGGGGACCGGCCCGGTCCCTCCTGCGTGCTTTCAATCCTGCTTG-TGTAACCTTCGGTCC
1 CAAGTCGGGGATCGGCCCGGTCCC-CCTGCGTGCTATCGATCCTGCTTGATGTAACCCTCGGTCC
34495906 GATCTGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACAAGCGTGCGGG
65 GATCTGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACAAGCGTGCGGG
** * * *
34495971 TGCTGAATCGACCGGTCAGGCATAATGCGTAAGCCGGGGATCGACCTGGTCCCCCTCTGCGTGCC
130 TGCTGAATCGACCGAACAGGCATAATGCGCAAGCCGGGGATCGACCCGATCCCCCTCTGCGTGCC
*
34496036 GCCGATCCTGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCTCTATGCC
195 GCCGATCCTGCTACCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCTCTATGCC
*
34496101 TAAGCCAACCTTGAAACGGGCGTGCGGGTGCTCAGCCAACTGAAAAGGCAGAATGCG
260 TAAGCCAACCTTGAAACGGGCGTGCGGGTGCTCAGCCAACTGAAAAGGCAGAACGCG
* * ** * *
34496158 CAAGTCGGGGATCGGCCCGGTCCCCCCTGCGTGCTACCGATCCTAC-TGCCGTAACCCTCTGCCC
1 CAAGTCGGGGATCGGCCCGGT-CCCCCTGCGTGCTATCGATCCTGCTTGATGTAACCCTCGGTCC
* *
34496222 GGT-TCGATCTTAGACTGGGAATGAACTTCGTATGC
65 GATCT-GATCTTAGACTGGGAATGAACTCCGTATGC
34496257 TTAGACTGGG
Statistics
Matches: 366, Mismatches: 43, Indels: 12
0.87 0.10 0.03
Matches are distributed among these distances:
315 5 0.01
316 354 0.97
317 7 0.02
ACGTcount: A:0.21, C:0.30, G:0.28, T:0.21
Consensus pattern (316 bp):
CAAGTCGGGGATCGGCCCGGTCCCCCTGCGTGCTATCGATCCTGCTTGATGTAACCCTCGGTCCG
ATCTGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACAAGCGTGCGGGT
GCTGAATCGACCGAACAGGCATAATGCGCAAGCCGGGGATCGACCCGATCCCCCTCTGCGTGCCG
CCGATCCTGCTACCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCTCTATGCCT
AAGCCAACCTTGAAACGGGCGTGCGGGTGCTCAGCCAACTGAAAAGGCAGAACGCG
Found at i:34496256 original size:157 final size:157
Alignment explanation
Indices: 34495514--34496256 Score: 554
Period size: 158 Copynumber: 4.7 Consensus size: 157
34495504 CCGACCTGAG
* * * * * * ** * ** *
34495514 AGGCATAATGCACAAGTCGAGGATCGGCCCGATCACCCCTACGTGCTGTCGATCCTGTTGATGCA
1 AGGCAGAATGCGCAAGTCGGGGATCGGCCCGGTCCCCCCTGCGTGCTACCGATCCTGCTGCCGTA
* * * ** **
34495579 ACCCTCGGT-CTGATCTGATCTTAGAC-TGGGAATGAACTCTGTATGCCTAGGTTAACCCACGAA
66 ACCCTCGGTCCGGATC-GATCTTAGACAT-GGAATGAACTCTCTATGCCTAAGCCAA-CCTTGAA
* * * * * * * *
34495642 ATGAGTGTGTGGGTGCTGAGTCGA-TCGAAG
128 ACGGGCGTGCGGGTGCTCAGCCAACT-GAAA
* * * * ** * * *
34495672 ATGCATAATGCGCAAG-CTGGGGATCGACCCGATCCCCCTCTGCGTGCTGTCGGTCCTGCTACCA
1 AGGCAGAATGCGCAAGTC-GGGGATCGGCCCGGTCCCCC-CTGCGTGCTACCGATCCTGCTGCCG
* * * **
34495736 CAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCTCTATGCCTAAGCCAACCTTGAAA
64 TAACCCTCGGTCCGGATCGATCTTAGACATGGAATGAACTCTCTATGCCTAAGCCAACCTTGAAA
34495801 CGGGCGTGCGGGTGCTCAGCCAA-TCGAAA
129 CGGGCGTGCGGGTGCTCAGCCAACT-GAAA
* * * ** * *
34495830 AGGCAGAACGCGCAAGTCGGGGACCGGCCCGGTCCCTCCTGCGTGCTTTCAATCCTGCTTG-TGT
1 AGGCAGAATGCGCAAGTCGGGGATCGGCCCGGTCCCCCCTGCGTGCTACCGATCCTGC-TGCCGT
* * * **
34495894 AACCTTCGGTCC-GATCTGATCTTAGAC-TGGGAATGAACTC-CGTATGCATAAGTCAACCCACG
65 AACCCTCGGTCCGGATC-GATCTTAGACAT-GGAATGAACTCTC-TATGCCTAAGCCAA-CCTTG
** * ** * * ***
34495956 AAACAAGCGTGCGGGTGCTGAATCGACCGGTC
126 AAACGGGCGTGCGGGTGCTCAGCCAACTGAAA
* * * * * ** **
34495988 AGGCATAATGCGTAAGCCGGGGATCGACCTGGTCCCCCTCTGCGTGCCGCCGATCCTGCTGCCAC
1 AGGCAGAATGCGCAAGTCGGGGATCGGCCCGGTCCCCC-CTGCGTGCTACCGATCCTGCTGCCGT
* * **
34496053 AACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCTCTATGCCTAAGCCAACCTTGAAAC
65 AACCCTCGGTCCGGATCGATCTTAGACATGGAATGAACTCTCTATGCCTAAGCCAACCTTGAAAC
34496118 GGGCGTGCGGGTGCTCAGCCAACTGAAA
130 GGGCGTGCGGGTGCTCAGCCAACTGAAA
*
34496146 AGGCAGAATGCGCAAGTCGGGGATCGGCCCGGTCCCCCCTGCGTGCTACCGATCCTACTGCCGTA
1 AGGCAGAATGCGCAAGTCGGGGATCGGCCCGGTCCCCCCTGCGTGCTACCGATCCTGCTGCCGTA
* * *
34496211 ACCCTCTGCCCGGTTCGATCTTAGAC-TGGGAATGAACT-TCGTATGC
66 ACCCTCGGTCCGGATCGATCTTAGACAT-GGAATGAACTCTC-TATGC
34496257 TTAGACTGGG
Statistics
Matches: 453, Mismatches: 114, Indels: 37
0.75 0.19 0.06
Matches are distributed among these distances:
156 7 0.02
157 117 0.26
158 202 0.45
159 119 0.26
160 8 0.02
ACGTcount: A:0.21, C:0.29, G:0.28, T:0.21
Consensus pattern (157 bp):
AGGCAGAATGCGCAAGTCGGGGATCGGCCCGGTCCCCCCTGCGTGCTACCGATCCTGCTGCCGTA
ACCCTCGGTCCGGATCGATCTTAGACATGGAATGAACTCTCTATGCCTAAGCCAACCTTGAAACG
GGCGTGCGGGTGCTCAGCCAACTGAAA
Found at i:34496259 original size:26 final size:26
Alignment explanation
Indices: 34496230--34496282 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34496220 CCGGTTCGAT
*
34496230 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
34496256 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
34496282 C
1 C
34496283 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34496990 original size:26 final size:26
Alignment explanation
Indices: 34496952--34497004 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
34496942 GGCTCAAAAT
34496952 CTTAGGCTGGGAATGAACTCTGTATG
1 CTTAGGCTGGGAATGAACTCTGTATG
34496978 CTTAGGCAT-GGAATGAACTCTGTATG
1 CTTAGGC-TGGGAATGAACTCTGTATG
34497004 C
1 C
34497005 CTAAGTCACC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGGCTGGGAATGAACTCTGTATG
Found at i:34497481 original size:26 final size:26
Alignment explanation
Indices: 34497452--34497504 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34497442 CCTATCCGAT
34497452 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
34497478 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
34497504 C
1 C
34497505 CTATGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34497857 original size:26 final size:26
Alignment explanation
Indices: 34497819--34497871 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34497809 CTGATCCAAT
*
34497819 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
34497845 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
34497871 C
1 C
34497872 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:34499063 original size:26 final size:26
Alignment explanation
Indices: 34499025--34499077 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
34499015 GGCTCAAAAT
34499025 CTTAGAATGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
34499051 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGA-ATGGGAATGAACTCCGTATG
34499077 C
1 C
34499078 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Found at i:34499394 original size:159 final size:159
Alignment explanation
Indices: 34499050--34499551 Score: 488
Period size: 159 Copynumber: 3.2 Consensus size: 159
34499040 AACTCCGTAT
* *
34499050 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * *
34499115 -CAGGCCGGAGAGGCAGAATGCACAAGTCGGGGATCGGCCTGGTCCCCC-CTATGTGTTGTCGAT
66 CCA-TCCGGAGAGGCAGAATGCGCAAGCCGAGAATCGGCCCGGTCCCCCTCTATGTGCTGTCGAT
**
34499178 CCTGCTACCACAACCCTCAGTCTGGTCTGA
130 CCCACTACCACAACCCTCAGTCTGGTCTGA
* * * * * *
34499208 TCTTAGAC-TGGGAATTAACTCCGTATGCATAAGTCAACCCACGAAATGAGCGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* **
34499272 GCCATCCGGAGAGGCATAATGCGCAAGCCGAGAATCACCCCGGTCCCCCTCTATGTGCTGTCGAT
65 GCCATCCGGAGAGGCAGAATGCGCAAGCCGAGAATCGGCCCGGTCCCCCTCTATGTGCTGTCGAT
* * *
34499337 CCCACTGCCACAACCCTCGGT-TCGG-CTGGG
130 CCCACTACCACAACCCTCAGTCT-GGTCT-GA
* * * *
34499367 GCTTAGACATGGAATGAACTTCC-TATGCCTAAGCCAACCCACGAAACGGGTGTGCAGACGCTCA
1 GCTTAGACATGGAATGAAC-TCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * **
34499431 GCCGGT-CGGAAAGGCAGAATGAGCAAGCCGAGAATCGGCCCGATCCCCCTGC---GTGCTACCG
65 GCC-ATCCGGAGAGGCAGAATGCGCAAGCCGAGAATCGGCCCGGTCCCCCT-CTATGTGCTGTCG
** *
34499492 ATCCTGCTGCCGA-AACCCTCAGTCTGGTCTGA
128 ATCCCACTACC-ACAACCCTCAGTCTGGTCTGA
* * *
34499524 TCTTATAC-TGGGAATGAACTCCATATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
34499552 TTAGACTGAG
Statistics
Matches: 282, Mismatches: 48, Indels: 29
0.79 0.13 0.08
Matches are distributed among these distances:
156 4 0.01
157 49 0.17
158 98 0.35
159 125 0.44
160 6 0.02
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.19
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCATCCGGAGAGGCAGAATGCGCAAGCCGAGAATCGGCCCGGTCCCCCTCTATGTGCTGTCGATC
CCACTACCACAACCCTCAGTCTGGTCTGA
Done.