Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 379 of 402
Found at i:34500578 original size:26 final size:26
Alignment explanation
Indices: 34500542--34500594 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34500532 CTGGTTCAAT
34500542 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
34500568 CTTAGACTGGGGATGACCTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
34500594 C
1 C
34500595 CTAAGTCATC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34500775 original size:26 final size:26
Alignment explanation
Indices: 34500739--34500789 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
34500729 GGTTCAATCT
*
34500739 TAGACAGGGAATGAACTCTGTATGCA
1 TAGACAGGGAATGAACTCCGTATGCA
*
34500765 TAGACATGGAATGAACTCCGTATGC
1 TAGACAGGGAATGAACTCCGTATGC
34500790 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.33, C:0.18, G:0.25, T:0.24
Consensus pattern (26 bp):
TAGACAGGGAATGAACTCCGTATGCA
Found at i:34500847 original size:195 final size:196
Alignment explanation
Indices: 34500510--34500897 Score: 496
Period size: 195 Copynumber: 2.0 Consensus size: 196
34500500 GTGCTACCGA
* * * *
34500510 TCCTGCTGTCGCAACCCTCAGTCTGGTTCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
1 TCCTGCTGCCGCAACCCTCAGTCCGGTTCAATCTTAGACAGGGAATGAACTCCGTATGCATAGAC
* * * * * * ***
34500575 TGGGGATGACCTCCGTATGCCTAAGTCATCACATGAAACGAGCGTGCGGGTGCTCAATCGGTTGG
66 TGGGAATGAACTCCGTATGCCTAAGCCAACACATGAAACGAGCATGCGGGCGCTCAATCGGCCAG
* * * *
34500640 AGAGGCAGAATGCACAAGCTAGGGATCGACCCGATCCCCCTTGCGTGCTGTC-ATCCTGCTGCTG
131 AGAGGCAGAATGCACAAGCCAGGGACCGACCCGATCCCCCCTACGTGCTGTCGATCCTGCTGCTG
34500704 G
196 G
* * *
34500705 TCCTGCTGCCGTAACCCTCGGTCCGGTTCAATCTTAGACAGGGAATGAACTCTGTATGCATAGAC
1 TCCTGCTGCCGCAACCCTCAGTCCGGTTCAATCTTAGACAGGGAATGAACTCCGTATGCATAGAC
*
34500770 AT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCAT-CTGGGCGCTCAGAT-GGC
66 -TGGGAATGAACTCCGTATGCCTAAGCCAACACATGAAACGAGCATGC-GGGCGCTCA-ATCGGC
* * * *
34500832 CAGAGAGGTAGAATGCACAAGCCGGGGACCGGCCCGATCCCCCCTATGTGCTGTCGATCCTGCTG
128 CAGAGAGGCAGAATGCACAAGCCAGGGACCGACCCGATCCCCCCTACGTGCTGTCGATCCTGCTG
34500897 C
193 C
34500898 CACAACCCTC
Statistics
Matches: 164, Mismatches: 25, Indels: 7
0.84 0.13 0.04
Matches are distributed among these distances:
194 1 0.01
195 150 0.91
196 13 0.08
ACGTcount: A:0.22, C:0.28, G:0.27, T:0.22
Consensus pattern (196 bp):
TCCTGCTGCCGCAACCCTCAGTCCGGTTCAATCTTAGACAGGGAATGAACTCCGTATGCATAGAC
TGGGAATGAACTCCGTATGCCTAAGCCAACACATGAAACGAGCATGCGGGCGCTCAATCGGCCAG
AGAGGCAGAATGCACAAGCCAGGGACCGACCCGATCCCCCCTACGTGCTGTCGATCCTGCTGCTG
G
Found at i:34501264 original size:158 final size:156
Alignment explanation
Indices: 34500772--34501256 Score: 522
Period size: 158 Copynumber: 3.1 Consensus size: 156
34500762 GCATAGACAT
* ** * *
34500772 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATCTGGGCGCTCAGATGGCCAGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTC-GGGCGCTCAGCCGGTCGGAG
* * * * *
34500837 AGGTAGAATGCACAAGCCGGGGACCGGCCCGATCCCCCCTATGTGCTGTCGATCCTGCTGCCACA
65 AGGTAGAATGCGCAA-CCCGGGATCGGCCCGATCCCCCCTACGTGCTGCCGATCCTGCTGCCACA
*
34500902 ACCCTCAGTCCGGTCCGATCTTAGACTG
129 ACCCTCAGTCCGGTTCGATCTTAGACTG
* * * * * *
34500930 GAAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTCGGGCGTTGAGCCGGTTGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCG-TCGGGCGCTCAGCCGGTCGGAG
* * * * * * * * *
34500995 AGGCATAATGCGCAAGCCGTGGTTCGACCCAATCCCCCTCTGCGTGCTGCCGGTCCTGCTACCAC
65 AGGTAGAATGCGCAACCCG-GGATCGGCCCGATCCCCC-CTACGTGCTGCCGATCCTGCTGCCAC
* ** * **
34501060 AACCCTCCGTCCGACTGGGGCTTAGACAT-
128 AACCCTCAGTCCGGTTCGATCTTAGAC-TG
* * *
34501089 GGAATGAACTCCCTATGCCTAAGCCAACCCATGACACGGGCGTGCGGGCGCTCAGCCGGTCGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGT-CGGGCGCTCAGCCGGTCGGAG
* * * * *
34501154 AGGTAGAATGTGCAACCCCGGGATCGGCTCGGTCCCCCCTACGTGCTCCCGATCCTGCTGCCGCA
65 AGGTAGAATGCGCAA-CCCGGGATCGGCCCGATCCCCCCTACGTGCTGCCGATCCTGCTGCCACA
*
34501219 ACCCTCGGTCCGGTTCGATCTTAGACTG
129 ACCCTCAGTCCGGTTCGATCTTAGACTG
34501247 GGAATGAACT
1 GGAATGAACT
34501257 TTGTATGCTT
Statistics
Matches: 259, Mismatches: 61, Indels: 14
0.78 0.18 0.04
Matches are distributed among these distances:
157 3 0.01
158 130 0.50
159 122 0.47
160 4 0.02
ACGTcount: A:0.21, C:0.33, G:0.28, T:0.19
Consensus pattern (156 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTCGGGCGCTCAGCCGGTCGGAGA
GGTAGAATGCGCAACCCGGGATCGGCCCGATCCCCCCTACGTGCTGCCGATCCTGCTGCCACAAC
CCTCAGTCCGGTTCGATCTTAGACTG
Found at i:34501289 original size:26 final size:26
Alignment explanation
Indices: 34501238--34501290 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
34501228 CCGGTTCGAT
***
34501238 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
34501264 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
34501290 C
1 C
34501291 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:34502674 original size:26 final size:26
Alignment explanation
Indices: 34502632--34502684 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
34502622 GGCTCAAACT
34502632 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
34502658 CTTAGACAT-GGAGTGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
34502684 C
1 C
34502685 CTAAGCCACC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:34504354 original size:26 final size:26
Alignment explanation
Indices: 34504325--34504377 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
34504315 CTGGTCCGAT
34504325 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
*
34504351 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
34504377 C
1 C
34504378 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTCCGTATG
Found at i:34504707 original size:170 final size:172
Alignment explanation
Indices: 34504358--34504718 Score: 383
Period size: 170 Copynumber: 2.1 Consensus size: 172
34504348 ATGCTTAGAT
* * * * * *
34504358 TGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGAGCTCAACCGATCGG
1 TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCAGGAGCTCAACCAACCGG
* * * * * * *
34504423 AGAGGCATAATGCGCAAGCCGGGGATCAGCCCGATCCCTCTTTGCGTGCTGTCGATCCCGCTGCC
66 AGAGGCAGAATGCGCAAACCGGAGATCAGCCCGATCCCTCTCTACATGCTGTCGATCCCACTGCC
* * *
34504488 GGTCCTGCTGCCACAACCCTCAGTCCGACTGGGGCTTAGACA
131 GGTCCTGCTGCCACAACCCTCAGTCCGACTCGAGCTTAAACA
* * * *
34504530 T-GGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGTGCTCAGCCAACCGG
1 TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCAGGAGCTCAACCAACCGG
* * *
34504594 AGAGGCAGAATGCGTAAATC-GAGATC-GACCCGATCCC-CTCCTACATGCTGTCGATCCTACTG
66 AGAGGCAGAATGCGCAAACCGGAGATCAG-CCCGATCCCTCT-CTACATGCTGTCGATCCCACTG
* ** * * *
34504656 CTGGTCCTGCTGCTGCAACCCTCGGTCCG-GTCCGATCTTAAAC-
129 CCGGTCCTGCTGCCACAACCCTCAGTCCGACT-CGAGCTTAAACA
*
34504699 TGGGAATGAACTCCGAATGC
1 TGGGAATGAACTCCGTATGC
34504719 TTAGACATGG
Statistics
Matches: 154, Mismatches: 31, Indels: 10
0.79 0.16 0.05
Matches are distributed among these distances:
169 5 0.03
170 79 0.51
171 69 0.45
172 1 0.01
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (172 bp):
TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCAGGAGCTCAACCAACCGG
AGAGGCAGAATGCGCAAACCGGAGATCAGCCCGATCCCTCTCTACATGCTGTCGATCCCACTGCC
GGTCCTGCTGCCACAACCCTCAGTCCGACTCGAGCTTAAACA
Found at i:34505020 original size:159 final size:158
Alignment explanation
Indices: 34504721--34505171 Score: 492
Period size: 159 Copynumber: 2.8 Consensus size: 158
34504711 CCGAATGCTT
* * **
34504721 AGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATACGGGCGCTCAACCGG
1 AGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGTCGG
* * * * * * *
34504786 CCAAAGAGGCAGAATGCACAAGCCAGGGATCGACCCGATTCCCGCCTGCGTGCTGTCGATCCTAC
66 CCGAAGAGGCAGAATGCGCAAGCCAGGGATCGGCTCGA-TCCCCCCTACGTGCTGTCGATCCTGC
* *** * *
34504851 TGCTGTAACCCTTAGTCCG-GTCTGATCTG
130 TACCACAACCCTTAGTCCGACTCGGA-CTG
* * * * *
34504880 AGAC-TGGGAGTGAACTCTGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTGAGTCG
1 AGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGTCG
* * * * *
34504944 GCCGGAGAGGCATAATGTGCAAGCCTGGGATCGGCTCGGTCCCCCTCTACGTGCTGTCGATCCTG
65 GCCGAAGAGGCAGAATGCGCAAGCCAGGGATCGGCTCGATCCCCC-CTACGTGCTGTCGATCCTG
* * *
34505009 CTACCACAACCCTTGGTCTGACTCGGACTT
129 CTACCACAACCCTTAGTCCGACTCGGACTG
* * * * *
34505039 AGACATGGAATGAACTCCCTATGCCTAAGCCAACGCATGAAACAAGCGTGCGGGCACTCAGTCGA
1 AGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGTCGG
* * ** *
34505104 CCGAAGAGGCAGAATGCGCAAGCCGGGGATTGGCTCGATCAACCCTATGTGCTGTCGATCCTGCT
66 CCGAAGAGGCAGAATGCGCAAGCCAGGGATCGGCTCGATCCCCCCTACGTGCTGTCGATCCTGCT
34505169 ACC
131 ACC
34505172 GCTACCCTCA
Statistics
Matches: 239, Mismatches: 49, Indels: 9
0.80 0.16 0.03
Matches are distributed among these distances:
158 29 0.12
159 205 0.86
160 5 0.02
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.19
Consensus pattern (158 bp):
AGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGTCGG
CCGAAGAGGCAGAATGCGCAAGCCAGGGATCGGCTCGATCCCCCCTACGTGCTGTCGATCCTGCT
ACCACAACCCTTAGTCCGACTCGGACTG
Found at i:34505223 original size:26 final size:26
Alignment explanation
Indices: 34505194--34505246 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
34505184 TTGATCCGAT
*
34505194 CTTAAAGTAGGAATGAACTCCGTATG
1 CTTAAACTAGGAATGAACTCCGTATG
* * *
34505220 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAAACTAGGAATGAACTCCGTATG
34505246 C
1 C
34505247 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAAACTAGGAATGAACTCCGTATG
Found at i:34510752 original size:26 final size:26
Alignment explanation
Indices: 34510714--34510766 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34510704 GGCTCAAAAT
*
34510714 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
34510740 CTTAGACAT-GGAATAAACTCCGTATG
1 CTTAGAC-TGGGAATAAACTCCGTATG
34510766 C
1 C
34510767 CTACGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:34511671 original size:25 final size:26
Alignment explanation
Indices: 34511632--34511682 Score: 77
Period size: 25 Copynumber: 2.0 Consensus size: 26
34511622 CAGACCGATT
34511632 TTAGACTAGGAATGAACTC-GTATGC
1 TTAGACTAGGAATGAACTCTGTATGC
* *
34511657 TTAGACTGGGGATGAACTCTGTATGC
1 TTAGACTAGGAATGAACTCTGTATGC
34511683 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 17 0.74
26 6 0.26
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.29
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTCTGTATGC
Found at i:34511948 original size:26 final size:26
Alignment explanation
Indices: 34511919--34511971 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34511909 CCGGTTTGAT
*
34511919 CTTAGAC-TAGGAGTGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
34511945 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
34511971 C
1 C
34511972 CTAAACCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:34512447 original size:159 final size:159
Alignment explanation
Indices: 34511954--34512447 Score: 414
Period size: 159 Copynumber: 3.1 Consensus size: 159
34511944 GCTTAGACAT
* * * * * * *
34511954 GGAATGAACTCCGTATGCCTAAACCAACTCACGAAACGAGTG-TTCCGGTGCTTAGCCGGCCGGA
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACG-GGGATGCGGGTGCTCAGCCGACCGGA
* * * * * * * *
34512018 GAGGTAGAATGCGCAAGCCAGAGACCGACCCAGTGCCCCCC-ACGTGCTGTCGATCCTACTGCCA
65 GAGGCAGAATACGCAAGCCAGAGATCGGCTCGGT-CCCCCCTACATGTTGTCGATCCTACTGCCA
** * *
34512082 CAACCCTCAAT-TCGATCTGATCTTAGAT-TG
129 CAACCCTCGGTCT-GGTCCGATCTTAGATCTG
* * * * ** * *
34512112 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATGCGGGTGCAGACCCGACTGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGGGATGCGGGTGCTCAGCCGACCGGAG
* * * * ** *
34512177 AGGCATAATACGCAAGCCAGAGATCGGCTCAGG-CCCCCTCTGCATGTTATCGGTCCCGCTACCA
66 AGGCAGAATACGCAAGCCAGAGATCGGCTC-GGTCCCCC-CTACATGTTGTCGATCCTACTGCCA
* * * * **
34512241 CATCCCTCGGTC-CGACTGGGGCTTAGA-CAT-
129 CAACCCTCGGTCTGGTC-CGATCTTAGATC-TG
* * *
34512271 GGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAACGGGGATGCGGGCGCTCAGCCGACCGGA-
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGGGATGCGGGTGCTCAGCCGACCGGAG
* * * *
34512335 ATGGCAGAATCCGCAAGCCAGGGATCGGCTCGGTCCCCCCTACATGTTGTCGATCCTACTGTCGC
66 A-GGCAGAATACGCAAGCCAGAGATCGGCTCGGTCCCCCCTACATGTTGTCGATCCTACTGCCAC
34512400 AACCCTCGGTCTGGTCCGATCTTAAGATCTG
130 AACCCTCGGTCTGGTCCGATCTT-AGATCTG
34512431 GGAATG-ACTCCGTATGC
1 GGAATGAACTCCGTATGC
34512448 TTAGACTGGT
Statistics
Matches: 254, Mismatches: 68, Indels: 27
0.73 0.19 0.08
Matches are distributed among these distances:
157 5 0.02
158 111 0.44
159 130 0.51
160 8 0.03
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (159 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGGGATGCGGGTGCTCAGCCGACCGGAG
AGGCAGAATACGCAAGCCAGAGATCGGCTCGGTCCCCCCTACATGTTGTCGATCCTACTGCCACA
ACCCTCGGTCTGGTCCGATCTTAGATCTG
Found at i:34512450 original size:27 final size:29
Alignment explanation
Indices: 34512420--34512480 Score: 67
Period size: 28 Copynumber: 2.2 Consensus size: 29
34512410 CTGGTCCGAT
34512420 CTTAAGATCTGG-GAATG-ACT-CCGTATG
1 CTTAAGA-CTGGTGAATGAACTGCCGTATG
*
34512447 CTT-AGACTGGTGGATGAACTGCCGTATG
1 CTTAAGACTGGTGAATGAACTGCCGTATG
*
34512475 CCTAAG
1 CTTAAG
34512481 TCAATCCCAC
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
25 4 0.14
26 7 0.25
27 6 0.21
28 9 0.32
29 2 0.07
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.28
Consensus pattern (29 bp):
CTTAAGACTGGTGAATGAACTGCCGTATG
Found at i:34514559 original size:24 final size:24
Alignment explanation
Indices: 34514527--34514572 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
34514517 CTACTTATCA
34514527 GTAGTATATATATCCTGACTCACT
1 GTAGTATATATATCCTGACTCACT
34514551 GTAGTATATATATCCTGACTCA
1 GTAGTATATATATCCTGACTCA
34514573 TTTCTATCAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.30, C:0.20, G:0.13, T:0.37
Consensus pattern (24 bp):
GTAGTATATATATCCTGACTCACT
Found at i:34520755 original size:26 final size:26
Alignment explanation
Indices: 34520719--34520771 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
34520709 GTTGACTTAG
34520719 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
*
34520745 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
34520771 G
1 G
34520772 ATCAGGCCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATATGGAGTTCATCCCCAGTCTAA
Found at i:34520939 original size:26 final size:25
Alignment explanation
Indices: 34520903--34520954 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
34520893 GTTGGCTTAG
*
34520903 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATCCCA-GTCTAA
34520929 GCATACGGAGTTCATCCCAGTCTAA
1 GCATACGGAGTTCATCCCAGTCTAA
34520954 G
1 G
34520955 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (25 bp):
GCATACGGAGTTCATCCCAGTCTAA
Found at i:34521682 original size:26 final size:26
Alignment explanation
Indices: 34521635--34521687 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
34521625 GTTGACTTAG
*
34521635 GCATACAGAGTTCATCCCCAGTTTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* * *
34521661 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
34521687 G
1 G
34521688 ATCGGATCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:34522117 original size:158 final size:156
Alignment explanation
Indices: 34521660--34522162 Score: 492
Period size: 158 Copynumber: 3.2 Consensus size: 156
34521650 CCCCAGTTTA
* * *
34521660 AGCATACGGAGTTCATTCTCA-GTCTAAGATCGGATCAGACCGAGGGTTGCGGTAGCAGGATCGA
1 AGCATACGGAGTTCATTC-CATGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCAGGATCAA
* * * * * * *
34521724 CAGCACGTAGGGGGGACCGAGCCAATCCCTAGCTTGCGCATTCTACCTCTCCGGTCGGCTGAGCA
65 CAGCACGTAGGGGGGACCGGGTCGATCTC-GGCTTGAGCATTCTACCTCTCCGGTCGGCTGAGCG
* * * *
34521789 CCCGTACGCCCGTTTTGTGGGGTGGCTT
129 CCCGCACGCTCGTTTCGTGGGTTGGCTT
* * * * ** **
34521817 AGGCATAGGGAGTTCATTCCATGTCTAAGTTCCA-ATCAGATCAAGGGTTATGGCAGC-GGGCCA
1 A-GCATACGGAGTTCATTCCATGTCTAAGAT-CAGATCAGACCGAGGGTTGCGGCAGCAGGATCA
* * * * * * * * * * *
34521880 GGCAGCATGCAAAGGGGGACCGGGTTGATCCTCGGCTTGAGCATTATGCCTCTTCGGCCAGCTCA
64 -ACAGCACG-TAGGGGGGACCGGGTCGAT-CTCGGCTTGAGCATTCTACCTCTCCGGTCGGCTGA
* * *
34521945 ACGCCCGCACGCTCGTTTCATGGGTTGACTT
126 GCGCCCGCACGCTCGTTTCGTGGGTTGGCTT
* * * *
34521976 ATGCATACAGAGTTCATTCC-TAGTCTAAGATCAGACCAGACCGAGGGGTGCAGCAGCAGGATCA
1 A-GCATACGGAGTTCATTCCAT-GTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCAGGATCA
** *
34522040 ACAGCACGTAGGGGGGATTGGGTCGATCTTCGGCTTGTGCATTCTACCTCTCCGGTCGGCTGAGC
64 ACAGCACGTAGGGGGGACCGGGTCGATC-TCGGCTTGAGCATTCTACCTCTCCGGTCGGCTGAGC
34522105 GCCCGCACGCTCGTTTCGTGGGTTGGCTT
128 GCCCGCACGCTCGTTTCGTGGGTTGGCTT
34522134 AGTCATACGGAGTTCATTCCATGTCTAAG
1 AG-CATACGGAGTTCATTCCATGTCTAAG
34522163 CATACGAAGT
Statistics
Matches: 267, Mismatches: 67, Indels: 23
0.75 0.19 0.06
Matches are distributed among these distances:
157 8 0.03
158 144 0.54
159 109 0.41
160 6 0.02
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (156 bp):
AGCATACGGAGTTCATTCCATGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCAGGATCAAC
AGCACGTAGGGGGGACCGGGTCGATCTCGGCTTGAGCATTCTACCTCTCCGGTCGGCTGAGCGCC
CGCACGCTCGTTTCGTGGGTTGGCTT
Found at i:34522173 original size:26 final size:26
Alignment explanation
Indices: 34522137--34522188 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
34522127 TTGGCTTAGT
*
34522137 CATACGGAGTTCATT-CCATGTCTAAG
1 CATACGAAGTTCATTCCCA-GTCTAAG
34522163 CATACGAAGTTCATTCCCAGTCTAAG
1 CATACGAAGTTCATTCCCAGTCTAAG
34522189 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (26 bp):
CATACGAAGTTCATTCCCAGTCTAAG
Found at i:34522904 original size:26 final size:26
Alignment explanation
Indices: 34522868--34522920 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
34522858 GTTGACTTAG
* *
34522868 GCATATGGAGTTCATCCCCCGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
34522894 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
34522920 G
1 G
34522921 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:34523102 original size:26 final size:26
Alignment explanation
Indices: 34523052--34523104 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34523042 GTTGGCTGAG
*
34523052 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
34523078 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
34523104 G
1 G
34523105 ATTGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:34523105 original size:184 final size:183
Alignment explanation
Indices: 34522795--34523262 Score: 614
Period size: 184 Copynumber: 2.6 Consensus size: 183
34522785 ACCACCCGTT
* *
34522795 CGATCCCCGGCTTGCGCATCCTACCTC-TCTGGTCGGCTGAGCACCCGCACGCTCGTTTCGTGGG
1 CGATCCCCGGCTTGCGCATTCTACCTCTTC-GGTCGGCTGAGCACCCGCACGCTCGTTTCATGGG
* * * ** *
34522859 TTGACTTAGGCATATGGAGTTCATCCCCCGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
65 TTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATC
* * * *
34522924 GGACCGGACCGAGGGTTGCGGCAGCAGGATCGATAGCACGCAGGGGGGATCGAGC
130 GGACCAGACCGAGGGTTGCGCCAGCAGGATCGACAGCACGCAGGGGGGACCG-GC
* * * * *
34522979 CGATCCCCGGCTTGTGCATTCTACCTCTTCGGCCGACTGAGCGCCCGCACACTCGTTTCATGGGT
1 CGATCCCCGGCTTGCGCATTCTACCTCTTCGGTCGGCTGAGCACCCGCACGCTCGTTTCATGGGT
* *
34523044 TGGCTGAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATTG
66 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCG
* * * *
34523109 GACCAGACCGAGGGTTGTGCCAGTAGGATCGGCAGCACGCAGGGGGGACCGGG
131 GACCAGACCGAGGGTTGCGCCAGCAGGATCGACAGCACGCAGGGGGGACCGGC
* * * * * ** * *
34523162 CAATCTCCGGCTTACGCATTCTGCCTCTCCGGTCGGCTGAGCACGTGCATGCTCATTTCATGGGT
1 CGATCCCCGGCTTGCGCATTCTACCTCTTCGGTCGGCTGAGCACCCGCACGCTCGTTTCATGGGT
*
34523227 TGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGC
66 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
34523263 CCCAGCCGGA
Statistics
Matches: 244, Mismatches: 39, Indels: 3
0.85 0.14 0.01
Matches are distributed among these distances:
183 86 0.35
184 156 0.64
185 2 0.01
ACGTcount: A:0.19, C:0.29, G:0.29, T:0.24
Consensus pattern (183 bp):
CGATCCCCGGCTTGCGCATTCTACCTCTTCGGTCGGCTGAGCACCCGCACGCTCGTTTCATGGGT
TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCG
GACCAGACCGAGGGTTGCGCCAGCAGGATCGACAGCACGCAGGGGGGACCGGC
Found at i:34523955 original size:26 final size:26
Alignment explanation
Indices: 34523919--34523971 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34523909 GTTGACTTAG
*
34523919 GCATACGGAGTTGATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
34523945 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
34523971 G
1 G
34523972 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:34524070 original size:183 final size:183
Alignment explanation
Indices: 34523762--34524113 Score: 440
Period size: 183 Copynumber: 1.9 Consensus size: 183
34523752 GTTGACTTAT
34523762 GCATACGAAATTCATTCCCAGTCTAAGATCGGATCAGACTGAGGGTTGCAACAGCAAGATCGACA
1 GCATACGAAATTCATTCCCAGTCTAAGATCGGATCAGACTGAGGGTTGCAACAGCAAGATCGACA
* * * * * *
34523827 GCATACGGGGGGACTGGGTCGATCCCCGGCTTGCGCATTCTGCCACTCCGACCAACTGAGCGCCC
66 GCACACAGAGGGACTGGGCCGATCCCCAGCTTGCGCATCCTGCCACTCCGACCAACTGAGCGCCC
* *
34523892 GTC-TGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTGATCCCCAGTCTAA
131 G-CACGCCCGTTTCGTGGGTTGACTTAGGCATACGGAGTTGATCCCCAGTCTAA
* * * * * **
34523945 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGA-TCGAGGGTTGCGACAGCAGGATGGGT
1 GCATACGAAATTCATTCCCAGTCTAAGATCGGATCAGACT-GAGGGTTGCAACAGCAAGATCGAC
* * * * * * *
34524009 AGCACGCAGAGGGA-TCGGGCCGATCCTCAGCTTGCGCATCCTTCCTCTCTGATCGACTGAGCGC
65 AGCACACAGAGGGACT-GGGCCGATCCCCAGCTTGCGCATCCTGCCACTCCGACCAACTGAGCGC
* *
34524073 CCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTT
129 CCGCACGCCCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
34524114 CATTCCATGT
Statistics
Matches: 142, Mismatches: 24, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
182 3 0.02
183 139 0.98
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.22
Consensus pattern (183 bp):
GCATACGAAATTCATTCCCAGTCTAAGATCGGATCAGACTGAGGGTTGCAACAGCAAGATCGACA
GCACACAGAGGGACTGGGCCGATCCCCAGCTTGCGCATCCTGCCACTCCGACCAACTGAGCGCCC
GCACGCCCGTTTCGTGGGTTGACTTAGGCATACGGAGTTGATCCCCAGTCTAA
Found at i:34524315 original size:26 final size:26
Alignment explanation
Indices: 34524279--34524331 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34524269 GTTGGCTTAG
*
34524279 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCAATCCTA-GTCTAA
34524305 GCATACGGAGTTCAATCCTAGTCTAA
1 GCATACGGAGTTCAATCCTAGTCTAA
34524331 G
1 G
34524332 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCAATCCTAGTCTAA
Found at i:34525042 original size:26 final size:26
Alignment explanation
Indices: 34525012--34525064 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34525002 GTTGACTTAG
*
34525012 GCATACGGAGTTCA-TCCTCAGTCTAA
1 GCATACAGAGTTCATTCC-CAGTCTAA
34525038 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
34525064 G
1 G
34525065 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:34525514 original size:26 final size:26
Alignment explanation
Indices: 34525466--34525518 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
34525456 GTTGACTTAG
*
34525466 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCACAGTCTAA
* *
34525492 GCATACAGAGTTCATTCATAGTCTAA
1 GCATACAGAGTTCATCCACAGTCTAA
34525518 G
1 G
34525519 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCACAGTCTAA
Found at i:34525650 original size:454 final size:454
Alignment explanation
Indices: 34524786--34525680 Score: 1283
Period size: 454 Copynumber: 2.0 Consensus size: 454
34524776 ACCACAAAAA
* * *
34524786 GTTTTGAAAATCGTGAAGAATAGAAAACGGGTCGTCTTGCCACGAAACTTCACACGAAGGCTTAG
1 GTTTTGAAAATCATGAAAAATAGAAAACGGGTCATCTTGCCACGAAACTTCACACGAAGGCTTAG
*
34524851 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGACAGAAATATGAAGATGTG
66 GAGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGACAGAAATATGAAGATGTG
*
34524916 CTTGAACCCACTTACCACCCGTTCGATCCTCGGCTTGCACATCCTGCCTCTCTGGTCAGCTGAAC
131 CTTGAACCCACCTACCACCCGTTCGATCCTCGGCTTGCACATCCTGCCTCTCTGGTCAGCTGAAC
* * * *
34524981 GCCCGCATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCTCAGTCTAAGCATACAG
196 GCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACAG
* * * *
34525046 AGTTCATTCCCAGTCTAAGATCGGATCAGACCAAGGGTTGCGGCAGCAAGATCGGCAGCACGCAG
261 AGTTCATTCACAGTCTAAGATCGGACCAGACCAAGGGTTGCGACAACAAGATCGGCAGCACGCAG
* * ** * * **
34525111 GAAGGATCGAGTCGATCCCCGACTTGGGCTTTCTACCTCTCCAGTCGGTTGAACACCCGCACGCC
326 GAAGGACCGAGCCGATCCCCGACTTACGCATTCTACCTCTCCAGCCGACTGAACACCCGCACGCC
* * * * *
34525176 TATTTCGTGGGTTAGCTTAGGCACAGAGAGTTCATTCAATGTGTAAGCCCCTGCTCGATCGAGG
391 CATTTCATGCGTTAGCTTAGGCACAGAGAGTCCATTCAATGTCTAAGCCCCTGCTCGATCGAGG
*
34525240 GTTTTGAAAATCATGAAAAATAGAAAACGGGTCATCTTGCCACGAAACTTCACATGAAGGCTTAG
1 GTTTTGAAAATCATGAAAAATAGAAAACGGGTCATCTTGCCACGAAACTTCACACGAAGGCTTAG
**
34525305 GAGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGTAGAAATATGAAGATGTG
66 GAGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGACAGAAATATGAAGATGTG
* *
34525370 CTTGAACCCACCTACCACCCGTTCGATCCTCGGCTTGCGCATCCTGCCTCTCTGGTC-GACTGAG
131 CTTGAACCCACCTACCACCCGTTCGATCCTCGGCTTGCACATCCTGCCTCTCTGGTCAG-CTGAA
* * *
34525434 TGCCTGCACGCTCATTTTATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACA
195 CGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACA
* * * *
34525499 GAGTTCATTCATAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAACAAGATCGGCAGCACGTA
260 GAGTTCATTCACAGTCTAAGATCGGACCAGACCAAGGGTTGCGACAACAAGATCGGCAGCACGCA
* * * * **** *
34525564 -GAGGGGACCGGGCCTATCCCCGACTTACGCATTCTGCCTCTTCCA-CCGACTGAGTGTCCGCAT
325 GGA-AGGACCGAGCCGATCCCCGACTTACGCATTCTACCTC-TCCAGCCGACTGAACACCCGCAC
* * * *
34525627 GCCCATTTCATGCGTTGGCTTAGGCATAGGGAGTCCATTCTATGTCTAAGCCCC
388 GCCCATTTCATGCGTTAGCTTAGGCACAGAGAGTCCATTCAATGTCTAAGCCCC
34525681 AGTCGGACCG
Statistics
Matches: 387, Mismatches: 51, Indels: 6
0.87 0.11 0.01
Matches are distributed among these distances:
453 3 0.01
454 380 0.98
455 4 0.01
ACGTcount: A:0.26, C:0.26, G:0.24, T:0.25
Consensus pattern (454 bp):
GTTTTGAAAATCATGAAAAATAGAAAACGGGTCATCTTGCCACGAAACTTCACACGAAGGCTTAG
GAGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGACAGAAATATGAAGATGTG
CTTGAACCCACCTACCACCCGTTCGATCCTCGGCTTGCACATCCTGCCTCTCTGGTCAGCTGAAC
GCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACAG
AGTTCATTCACAGTCTAAGATCGGACCAGACCAAGGGTTGCGACAACAAGATCGGCAGCACGCAG
GAAGGACCGAGCCGATCCCCGACTTACGCATTCTACCTCTCCAGCCGACTGAACACCCGCACGCC
CATTTCATGCGTTAGCTTAGGCACAGAGAGTCCATTCAATGTCTAAGCCCCTGCTCGATCGAGG
Found at i:34525994 original size:26 final size:26
Alignment explanation
Indices: 34525964--34526019 Score: 96
Period size: 26 Copynumber: 2.2 Consensus size: 26
34525954 TGGGTTGGCT
34525964 TAAGCATACGGAGTTCATT-CCATGTC
1 TAAGCATACGGAGTTCATTCCCA-GTC
34525990 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
34526016 TAAG
1 TAAG
34526020 ATCGGACTGG
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
26 26 0.90
27 3 0.10
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.29
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:34526545 original size:26 final size:26
Alignment explanation
Indices: 34526515--34526564 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
34526505 GTTGACTTAG
34526515 GCATACGGAGTTCA-TCCACAGTCTCA
1 GCATACGGAGTTCATTCC-CAGTCTCA
*
34526541 GCATATGGAGTTCATTCCCAGTCT
1 GCATACGGAGTTCATTCCCAGTCT
34526565 AAGATCGGAC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTCA
Found at i:34527005 original size:158 final size:157
Alignment explanation
Indices: 34526542--34527042 Score: 481
Period size: 158 Copynumber: 3.2 Consensus size: 157
34526532 ACAGTCTCAG
* * * *
34526542 CATATGGAGTTCATTCCCA-GTCTAAGATCGGACCGTACCGAGGGTTACGACAGTAGGATCGACA
1 CATATGGAGTTCATT-CCATGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAGGATCGACA
* * * * * * * * *
34526606 GGACGCAAGGGGCATCGGG-TCGATCCCCAGCTTACGCATTCTGCCTCTCTGATCGACTGAGCAC
65 GCACGTAAGGGGGATCGGGCT-GATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGC
34526670 CCGCACGC-CTGTTTCGTGGGTTGGCTTAGA
129 CCGCAC-CTC-GTTTCGTGGGTTGGCTTAGA
* ** * * ** * * *
34526700 CATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCGGACCAAGGGTTGTGGTAGCGGGACCGGCA
1 CATATGGAGTTCATTCCATGTCTAAG-ATCAGACCGGACCGAGGGTTGCGACAGCAGGATCGACA
* * * * * * * *
34526764 GCATGTAGAGGGGGACCAGGCTGATCCCTGACTTGTGCATTATGCCTCTCCGG-CTGGCTCAGCG
65 GCACGTA-AGGGGGATCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTC-GGCTGAGCG
* * * *
34526828 CCTGCATGCTCGTTTCGTGGGTTGACTTAGC
128 CCCGCA-CCTCGTTTCGTGGGTTGGCTTAGA
* ** * *
34526859 CATATGGAGTACATTCCCGGTCTAAGATCAGAACGGATCGAGGGTTGCGACAGCAGGATCGACAG
1 CATATGGAGTTCATTCCATGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAGGATCGACAG
*
34526924 CACGTAAGGGGGATCGGGCTGATCCCCGGCTTGCGCATTCTACCTCTCCGGTCGGCTGAGCGCCC
66 CACGTAAGGGGGATCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCC
* *
34526989 GCACATTCGTTTCGTGGGTTGGCTTAGG
131 GCAC-CTCGTTTCGTGGGTTGGCTTAGA
**
34527017 CATGCGGAGTTCATTCCATGTCTAAG
1 CATATGGAGTTCATTCCATGTCTAAG
34527043 CATACGGAGT
Statistics
Matches: 264, Mismatches: 69, Indels: 20
0.75 0.20 0.06
Matches are distributed among these distances:
157 3 0.01
158 143 0.54
159 116 0.44
160 2 0.01
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (157 bp):
CATATGGAGTTCATTCCATGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAGGATCGACAG
CACGTAAGGGGGATCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCC
GCACCTCGTTTCGTGGGTTGGCTTAGA
Found at i:34527052 original size:26 final size:26
Alignment explanation
Indices: 34527016--34527068 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34527006 GTTGGCTTAG
*
34527016 GCATGCGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
34527042 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
34527068 G
1 G
34527069 AGCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:34527185 original size:184 final size:183
Alignment explanation
Indices: 34526859--34527410 Score: 743
Period size: 184 Copynumber: 3.0 Consensus size: 183
34526849 TTGACTTAGC
* * *
34526859 CATATGGAGTACATTCCCGGTCTAAGATCAGAACGGATCGAGGGTTGCGACAGCAGGATCGACAG
1 CATACGGAGTACATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCG-CAGCAGGATCGACAG
* * *
34526924 CACGTAAGGGGGATCGGGCTGATCCCCGGCTTGCGCATTCTACCTCTCCGGTCGGCTGAGCGCCC
65 CACGTAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGGCCGGCTGAGCGCCC
** *
34526989 GCACATTCGTTTCGTGGGTTGGCTTAGGCATGCGGAGTTCATTCCATGTCTAAG
130 GCACGCTCGTTTCATGGGTTGGCTTAGGCATGCGGAGTTCATTCCATGTCTAAG
* * * *
34527043 CATACGGAGTTCATTCCCAGTCTAAGAGCAGACCAGATCGAGGGTTGCAGCAGCAAGATCGACAG
1 CATACGGAGTACATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGC-GCAGCAGGATCGACAG
* * * *
34527108 CACGTAGGGGGGACCGGGCCGAT-CCCGAGCTTACGCATTCTGCCTCTCCGACCGGCTGAGCGCC
65 CACGTAGGGGGGATCGGGCCGATCCCCG-GCTTGCGCATTCTACCTCTCCGGCCGGCTGAGCGCC
* * *
34527172 CGCACGCTCGTTTCATGGGTTGACTTAGGCATGCAGAGTTCATCCCCAT-TCTAAG
129 CGCACGCTCGTTTCATGGGTTGGCTTAGGCATGCGGAGTTCAT-TCCATGTCTAAG
* **
34527227 CATAC-GAGTCCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGATCGGTAG
1 CATACGGAGTACATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGC-GCAGCAGGATCGACAG
* * * * * *
34527291 CACGCAGGGGGGATCGAGCCGATCCCCGGCTTGCGCATTCTTCCTCACCGGCCGACTGAGTGCCC
65 CACGTAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGGCCGGCTGAGCGCCC
* *
34527356 GCACGCCCGCTTCATGGGTTGGCTTAGGCATAG-GGAGTTCATTCCATGTCTAAG
130 GCACGCTCGTTTCATGGGTTGGCTTAGGCAT-GCGGAGTTCATTCCATGTCTAAG
34527410 C
1 C
34527411 CCCAGCTAGA
Statistics
Matches: 321, Mismatches: 41, Indels: 13
0.86 0.11 0.03
Matches are distributed among these distances:
182 4 0.01
183 150 0.47
184 162 0.50
185 5 0.02
ACGTcount: A:0.20, C:0.29, G:0.30, T:0.21
Consensus pattern (183 bp):
CATACGGAGTACATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGCAGCAGGATCGACAGC
ACGTAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGGCCGGCTGAGCGCCCG
CACGCTCGTTTCATGGGTTGGCTTAGGCATGCGGAGTTCATTCCATGTCTAAG
Found at i:34527432 original size:684 final size:686
Alignment explanation
Indices: 34526451--34527754 Score: 1731
Period size: 684 Copynumber: 1.9 Consensus size: 686
34526441 TCGATCCTTG
* * ** *
34526451 GCTTGCGCATCCTGCCTCTCTGGTCGGTTGAGCGCCCACACGCTCGTTTCATGGGTTGACTTAGG
1 GCTTACGCATCCTGCCTCTCCGACCGGCTGAGCGCCCACACGCTCGTTTCATGGGTTGACTTAGG
* * * * * *
34526516 CATACGGAGTTCATCCACAGTCTCAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGTACC
66 CATACAGAGTTCATCCACAGTCTAAGCATATCGAGTCCATTCCCAGTCTAAGATCAGACCGGACC
* * * *
34526581 GAGGGTTACGACAGTAGGATCGACAGGACGCAAGGGGCATCGGGTCGATCCCCAGCTTACGCATT
131 GAGGGTTACGACAGCAGGATCGACAGCACGCAAGGGGCATCGAGCCGATCCCCAGCTTACGCATT
* * * * * *
34526646 CTGCCTCTCTGATCGACTGAGCACCCGCACGCCTGTTTCGTGGGTTGGCTTAGACATAGGGAGTT
196 CTGCCTCACCGACCGACTGAGCACCCGCACGCCCGCTTCATGGGTTGGCTTAGACATAGGGAGTT
* * * *
34526711 CATTCCATGTCTAAGCCCCAGCCGGACCAAGGGTTGTGGTAGCGGGACCGGCAGCATGTAGAGGG
261 CATTCCATGTCTAAGCCCCAGCCAGACCAAGGGTTGTGGCAGCGGGACCGACAGCATGCAGAGGG
* * * *
34526776 GGA-CCAGGCTGATCCCTGACTTGTGCATTATGCCTCTCCGG-CTGGCTCAGCGCCTGCATGCTC
326 GGATCCAGGC-GATCCCCGACTTGCGCATTATGCCTCTCCGGCCT-GCTCAGCGCCCGCACGCTC
* * * * * *
34526839 GTTTCGTGGGTTGACTTA-GCCATATGGAGTACATTCCCGGTCTAAGATCAGAACGGATCGAGGG
389 ATTTCGTGGGTTGACTTATG-CATACGAAGTACATTCCCAGTCTAAGATCAGAACAGACCGAGGG
* * * *
34526903 TTGCGACAGCAGGATCGACAGCACGTAAG-GGGGATC-GGGCTGATCCCCGGCTTGCGCATTCTA
453 TTACGACAGCAGGATCGACAGCACGCAAGTGGGGACCAGGTC-GATCCCCGGCTTGCGCATTCTA
* * * *
34526966 CCTCTCCGG-TCGGCTGAGCGCCCGCACATTCGTTTCGTGGGTTGGCTTAGGCATGCGGAGTTCA
517 CCTCTCCGGCT-GGCTGAGCGCCCGCACACTCCTTTCGTGGATTGGCTTAGGCATACGGAGTTCA
34527030 TTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAGCAGACCAGATCGAGGGTTGCAGCA
581 TTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAGCAGACCAGATCGAGGGTTGCAGCA
34527095 GCAAGATCGACAGCACGTAGGGGGGACCGGGCCGATCCCGA
646 GCAAGATCGACAGCACGTAGGGGGGACCGGGCCGATCCCGA
* *
34527136 GCTTACGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGG
1 GCTTACGCATCCTGCCTCTCCGACCGGCTGAGCGCCCACACGCTCGTTTCATGGGTTGACTTAGG
* * * *
34527201 CATGCAGAGTTCATCCCCATTCTAAGCATA-CGAGTCCATTCCCAGTCTAAGATCAGACCGGATC
66 CATACAGAGTTCATCCACAGTCTAAGCATATCGAGTCCATTCCCAGTCTAAGATCAGACCGGACC
* * ** * * * *
34527265 GAGGGTTGCGGCAGCAGGATCGGTAGCACGCAGGGGGGATCGAGCCGATCCCCGGCTTGCGCATT
131 GAGGGTTACGACAGCAGGATCGACAGCACGCAAGGGGCATCGAGCCGATCCCCAGCTTACGCATT
* * ** *
34527330 CTTCCTCACCGGCCGACTGAGTGCCCGCACGCCCGCTTCATGGGTTGGCTTAGGCATAGGGAGTT
196 CTGCCTCACCGACCGACTGAGCACCCGCACGCCCGCTTCATGGGTTGGCTTAGACATAGGGAGTT
* * * * *
34527395 CATTCCATGTCTAAGCCCCAGCTAGATCGAGGGTTGTGGCAGCGGGACCGATAGCATGCATAGGG
261 CATTCCATGTCTAAGCCCCAGCCAGACCAAGGGTTGTGGCAGCGGGACCGACAGCATGCAGAGGG
** * * * * * *
34527460 GGATCGGGGCGATCCCCGGCTTGCGTATTATGCCTCTTCGGCCTGTTCAGTGCCCGTACGCTCAT
326 GGATCCAGGCGATCCCCGACTTGCGCATTATGCCTCTCCGGCCTGCTCAGCGCCCGCACGCTCAT
* * *
34527525 TTCGTGGGTTGACTTATGCATACGAAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTA
391 TTCGTGGGTTGACTTATGCATACGAAGTACATTCCCAGTCTAAGATCAGAACAGACCGAGGGTTA
** * * *
34527590 CGGTAGCAGGATCGACAGCATGCAGGTGGGGACCAGGTCGATCCCCGGCTTGCGCATTCTACCTT
456 CGACAGCAGGATCGACAGCACGCAAGTGGGGACCAGGTCGATCCCCGGCTTGCGCATTCTACCTC
** *
34527655 TTTGGCTGGCTGAGCGCCCGCACACTCCTTTCGTGTATTGGCTTAGGCATACGGAGTTCATTCCA
521 TCCGGCTGGCTGAGCGCCCGCACACTCCTTTCGTGGATTGGCTTAGGCATACGGAGTTCATTCCA
*
34527720 TGTCTAAGCATACGGATTTCATTCCCAGTCTAAGA
586 TGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
34527755 TTTTGAGCCA
Statistics
Matches: 526, Mismatches: 87, Indels: 12
0.84 0.14 0.02
Matches are distributed among these distances:
684 311 0.59
685 211 0.40
686 4 0.01
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.23
Consensus pattern (686 bp):
GCTTACGCATCCTGCCTCTCCGACCGGCTGAGCGCCCACACGCTCGTTTCATGGGTTGACTTAGG
CATACAGAGTTCATCCACAGTCTAAGCATATCGAGTCCATTCCCAGTCTAAGATCAGACCGGACC
GAGGGTTACGACAGCAGGATCGACAGCACGCAAGGGGCATCGAGCCGATCCCCAGCTTACGCATT
CTGCCTCACCGACCGACTGAGCACCCGCACGCCCGCTTCATGGGTTGGCTTAGACATAGGGAGTT
CATTCCATGTCTAAGCCCCAGCCAGACCAAGGGTTGTGGCAGCGGGACCGACAGCATGCAGAGGG
GGATCCAGGCGATCCCCGACTTGCGCATTATGCCTCTCCGGCCTGCTCAGCGCCCGCACGCTCAT
TTCGTGGGTTGACTTATGCATACGAAGTACATTCCCAGTCTAAGATCAGAACAGACCGAGGGTTA
CGACAGCAGGATCGACAGCACGCAAGTGGGGACCAGGTCGATCCCCGGCTTGCGCATTCTACCTC
TCCGGCTGGCTGAGCGCCCGCACACTCCTTTCGTGGATTGGCTTAGGCATACGGAGTTCATTCCA
TGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAGCAGACCAGATCGAGGGTTGCAGCAGCAAG
ATCGACAGCACGTAGGGGGGACCGGGCCGATCCCGA
Found at i:34527533 original size:159 final size:159
Alignment explanation
Indices: 34527226--34527729 Score: 475
Period size: 159 Copynumber: 3.2 Consensus size: 159
34527216 CCCATTCTAA
* * * * *
34527226 GCATAC-GAGTCCATTCCCA-GTCTAAG-ATCAGACCGGATCGAGGGTTGCGGCAGCAGGATCGG
1 GCATACGGAGTTCATT-CCATGTCTAAGCACCAGATCAGATCGAGGGTTGCGGCAGCAGGATCGA
* * * **
34527288 TAGCACGCAGGGGGGATCGAGCCGATCCCCGGCTTGCGCATTCTTCCTCACCGGCC-GACTGAGT
65 TAGCATGCAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTTCGGCCTG-CTGAGT
* ** *
34527352 GCCCGCACGCCCGCTTCATGGGTTGGCTTAG
129 GCCCGCACGCTCATTTCGTGGGTTGGCTTAG
* * * * * *
34527383 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCT-AGATCGAGGGTTGTGGCAGCGGGACCGAT
1 GCATACGGAGTTCATTCCATGTCTAAGCACCAGATCAGATCGAGGGTTGCGGCAGCAGGATCGAT
* * * * * * *
34527447 AGCATGCATAGGGGGATCGGGGCGATCCCCGGCTTGCGTATTATGCCTCTTCGGCCTGTTCAGTG
66 AGCATGCA-GGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTTCGGCCTGCTGAGTG
* * *
34527512 CCCGTACGCTCATTTCGTGGGTTGACTTAT
130 CCCGCACGCTCATTTCGTGGGTTGGCTTAG
* * * * * *
34527542 GCATACGAAGTTCATTCCCA-GTCTAAG-ATCGGATCAGACCGAGGGTTACGGTAGCAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGCACCAGATCAGATCGAGGGTTGCGGCAGCAGGATCGA
* * * * * *
34527605 CAGCATGCAGGTGGGGACCAGGTCGATCCCCGGCTTGCGCATTCTACCTTTTTGG-CTGGCTGAG
65 TAGCATGCAGG-GGGGATCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTTCGGCCT-GCTGAG
* * * **
34527669 CGCCCGCACACTCCTTTCGTGTATTGGCTTAG
128 TGCCCGCACGCTCATTTCGTGGGTTGGCTTAG
34527701 GCATACGGAGTTCATTCCATGTCTAAGCA
1 GCATACGGAGTTCATTCCATGTCTAAGCA
34527730 TACGGATTTC
Statistics
Matches: 274, Mismatches: 62, Indels: 19
0.77 0.17 0.05
Matches are distributed among these distances:
157 8 0.03
158 55 0.20
159 206 0.75
160 5 0.02
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.24
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCATGTCTAAGCACCAGATCAGATCGAGGGTTGCGGCAGCAGGATCGAT
AGCATGCAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTTCGGCCTGCTGAGTGC
CCGCACGCTCATTTCGTGGGTTGGCTTAG
Found at i:34527740 original size:26 final size:26
Alignment explanation
Indices: 34527701--34527753 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34527691 ATTGGCTTAG
34527701 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
34527727 GCATACGGATTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
34527753 G
1 G
34527754 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:34528453 original size:26 final size:26
Alignment explanation
Indices: 34528423--34528475 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
34528413 GTTGACTTAG
*
34528423 GCATACGGAGTTCGTCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
34528449 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
34528475 G
1 G
34528476 ATCAAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:34529601 original size:26 final size:26
Alignment explanation
Indices: 34529565--34529620 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
34529555 TGGATTGACT
34529565 TAAGCATACGGAGTTCATCCCCAGTC
1 TAAGCATACGGAGTTCATCCCCAGTC
*
34529591 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATCCCCAGTC
34529617 TAAG
1 TAAG
34529621 ATCGAACTGG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.25
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATCCCCAGTC
Found at i:34530630 original size:26 final size:26
Alignment explanation
Indices: 34530577--34530632 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
34530567 TAGGTTGACT
*
34530577 TAAGCATACAAAGTTCATCCCTAGTC
1 TAAGCATACAAAGTTCATCCCTAATC
*
34530603 TAAGCATACAGAGTTCATTCCC-AATC
1 TAAGCATACAAAGTTCA-TCCCTAATC
34530629 TAAG
1 TAAG
34530633 ATCAAACCAG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
26 23 0.85
27 4 0.15
ACGTcount: A:0.36, C:0.25, G:0.12, T:0.27
Consensus pattern (26 bp):
TAAGCATACAAAGTTCATCCCTAATC
Found at i:34530977 original size:159 final size:159
Alignment explanation
Indices: 34530606--34531099 Score: 378
Period size: 159 Copynumber: 3.1 Consensus size: 159
34530596 CCTAGTCTAA
* * * * * ** * * *
34530606 GCATACAGAGTTCATTCCCAATCTAAGATCAAACCAGACTGAGGGTTGCAGCATCATGATC-AGC
1 GCATACGGAGTTCATTCCCAATCTAAGATCAGATCGGACTGAAGGTTGTGGCAGCAAGACCGA-C
* * * * * *** *
34530670 AGTACGCAG-GGGGGACCGGGCCGATCCCTGGCTTACACATT-T-TGCCTCCCTGGCCGACTGAG
65 AGCACGCAGAGGGGGACCAGGCCAATCCCCGACTTGTGCATTATGTCCCT-CC-GGCCGACTGAG
* * * *
34530732 CGCCAGCACAC-CTGTATCGTGGGTTGGCTTAG
128 CGCCCGCACGCTC-GTTTCGTGGGTTGACTTAG
* * * ** * * **
34530764 GCAGAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCGGA-TGGAGGATTGTGGCAGCGGGACCG
1 GCATACGGAGTTCATTCCCA-ATCTAAG-ATCAGATCGGACTGAAGG-TTGTGGCAGCAAGACCG
** * * ** * *
34530826 GTAGCACGCAGAGGGGGACCGGGCCAATCCTCGGGTTGTGCATTATG-CCTCTTCGGCCTG-CTT
63 ACAGCACGCAGAGGGGGACCAGGCCAATCCCCGACTTGTGCATTATGTCC-CTCCGGCC-GACTG
* *
34530889 AGCGCCCGCACGCTTGTTTCGTGGGTTGACTTAT
126 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
*
34530923 GCATACGGAGTTCATTCCCAATCTAAGATCAGATCGGACTGAAGGTTGTGGCAGCAAGATCGACA
1 GCATACGGAGTTCATTCCCAATCTAAGATCAGATCGGACTGAAGGTTGTGGCAGCAAGACCGACA
* * * * * *
34530988 GCACTCAGGGGGGGATCAGGCCGATCCCCGACTTGTGCATTCTGTCCCTCCGGTCGACTGAGCGC
66 GCACGCAGAGGGGGACCAGGCCAATCCCCGACTTGTGCATTATGTCCCTCCGGCCGACTGAGCGC
* *
34531053 TCGCACGCTCGTTTCGTGGGTTGGCTTAG
131 CCGCACGCTCGTTTCGTGGGTTGACTTAG
34531082 GCATACGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
34531100 ATGTCTAAGC
Statistics
Matches: 258, Mismatches: 63, Indels: 29
0.74 0.18 0.08
Matches are distributed among these distances:
157 7 0.03
158 45 0.17
159 190 0.74
160 14 0.05
161 2 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCCAATCTAAGATCAGATCGGACTGAAGGTTGTGGCAGCAAGACCGACA
GCACGCAGAGGGGGACCAGGCCAATCCCCGACTTGTGCATTATGTCCCTCCGGCCGACTGAGCGC
CCGCACGCTCGTTTCGTGGGTTGACTTAG
Found at i:34531107 original size:159 final size:159
Alignment explanation
Indices: 34530748--34531110 Score: 394
Period size: 159 Copynumber: 2.3 Consensus size: 159
34530738 CACACCTGTA
* * * *
34530748 TCGTGGGTTGGCTTAGGCAGAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATGGAGGATTGT
1 TCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGCCGGATGAAGGATTGT
** ** * * **
34530813 GGCAGCGGGACCGGTAGCACGCAGAGGGGGACCGGGCCAATCCTCGGGTTGTGCATTATGCCTCT
66 GGCAGCAAGACCGACAGCACGCAGAGGGGGACCAGGCCAATCCCCGACTTGTGCATTATGCCTCT
* * *
34530878 TCGGCCTGCTTAGCGCCCGCACGCTTGTT
131 CCGGCCTGCTGAGCGCCCGCACGCTCGTT
* * * * *
34530907 TCGTGGGTTGACTTATGCATACGGAGTTCATTCCCA-ATCTAAG-ATCAGATCGGACTGAAGG-T
1 TCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAG-CCGGA-TGAAGGAT
* * * * * *
34530969 TGTGGCAGCAAGATCGACAGCACTCAGGGGGGGATCAGGCCGATCCCCGACTTGTGCATTCTGTC
63 TGTGGCAGCAAGACCGACAGCACGCAGAGGGGGACCAGGCCAATCCCCGACTTGTGCATTATG-C
* *
34531034 C-CTCCGGTC-GACTGAGCGCTCGCACGCTCGTT
127 CTCTCCGGCCTG-CTGAGCGCCCGCACGCTCGTT
34531066 TCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
1 TCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
34531111 TATGGAGTTC
Statistics
Matches: 166, Mismatches: 31, Indels: 13
0.79 0.15 0.06
Matches are distributed among these distances:
158 7 0.04
159 148 0.89
160 11 0.07
ACGTcount: A:0.18, C:0.26, G:0.32, T:0.24
Consensus pattern (159 bp):
TCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGCCGGATGAAGGATTGT
GGCAGCAAGACCGACAGCACGCAGAGGGGGACCAGGCCAATCCCCGACTTGTGCATTATGCCTCT
CCGGCCTGCTGAGCGCCCGCACGCTCGTT
Found at i:34531118 original size:26 final size:26
Alignment explanation
Indices: 34531082--34531134 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34531072 GTTGGCTTAG
34531082 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
34531108 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
34531134 G
1 G
34531135 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:34531824 original size:26 final size:26
Alignment explanation
Indices: 34531788--34531840 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
34531778 GTTGACTTAG
34531788 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
34531814 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
34531840 G
1 G
34531841 ATCAGATCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:34532337 original size:26 final size:26
Alignment explanation
Indices: 34532307--34532359 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34532297 GTTAACTTAG
34532307 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCCT-GTCTAA
*
34532333 GCATATGGAGTTCATTCCCTGTCTAA
1 GCATACGGAGTTCATTCCCTGTCTAA
34532359 G
1 G
34532360 ATCGGACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCTGTCTAA
Found at i:34534499 original size:26 final size:26
Alignment explanation
Indices: 34534463--34534515 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34534453 GTTGACTTAG
34534463 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
34534489 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
34534515 G
1 G
34534516 ATCAGCCAGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:34535411 original size:26 final size:26
Alignment explanation
Indices: 34535364--34535416 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
34535354 GTTGACTTAG
*
34535364 GCATACAGAGTTCATCCCCAGTTTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* * *
34535390 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
34535416 G
1 G
34535417 ATCGAATTAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:34535881 original size:158 final size:158
Alignment explanation
Indices: 34535391--34535893 Score: 469
Period size: 158 Copynumber: 3.2 Consensus size: 158
34535381 CCAGTTTAAG
* * * *
34535391 CATACGGAGTTCATTCTCA-GTCTAAGATC-GAATTAGACCGAGGGTTGCGGTAGCAGGATCGAC
1 CATACGGAGTTCATTC-CATGTCTAAGATCAG-ATCAGACCGAGGGTTACGGCAGCAGGATCAAC
* * * * * * *
34535454 AGCACGTAGGGGGGATCAGGTCAATCCCCAGCTTGTGTATTCTACCTCTCCAGTCGGCTGAGCAC
64 AGCACGTAGGGGGGATCGGGTCGATCCTCGGCTTGTGCATTCTACCTCTCCGGTCGGCTGAGCGC
* * *
34535519 CCGCACGCTCGTTTTGTGGGGTGGCTTAGG
129 CCGCACGCTCGTTTCGTGGGTTGGCTTAGT
* * * * * ** *
34535549 CATAGGGAGTTCATTCCATGTCTAAGTTCCA-ATCAGATCAAGGGTTATGGCAGC-GGGCCAGGC
1 CATACGGAGTTCATTCCATGTCTAAGAT-CAGATCAGACCGAGGGTTACGGCAGCAGGATCA-AC
* * * * * * * * * * * * *
34535612 AGCATGCAAAGGGGGACCGGGTTGATCCTCGGCTTGAGCATTATGCCTCTTCGGCCAGCTCAACG
64 AGCACG-TAGGGGGGATCGGGTCGATCCTCGGCTTGTGCATTCTACCTCTCCGGTCGGCTGAGCG
* *
34535677 CCCGCACGCTCGTTTCAATGGGGTTGACTTA-T
128 CCCGCACGCTCGTTTC-GT-GGGTTGGCTTAGT
* * * * *
34535709 GCATACTGAGTTCATTCC-TAGTCTAAGATCAGACCAGACCGAGGGGTACAGCAGCAGGATCAAT
1 -CATACGGAGTTCATTCCAT-GTCTAAGATCAGATCAGACCGAGGGTTACGGCAGCAGGATCAAC
* *
34535773 AGCACGTAGGGGGGATTGGGTCGATCTTCGGCTTGTGCATTCTACCTCTCCGGTCGGCTGAGCGC
64 AGCACGTAGGGGGGATCGGGTCGATCCTCGGCTTGTGCATTCTACCTCTCCGGTCGGCTGAGCGC
* *
34535838 CTGTACGCTCGTTTCGTGGGTTGGCTTAGT
129 CCGCACGCTCGTTTCGTGGGTTGGCTTAGT
34535868 CATACGGAGTTCATTCCATGTCTAAG
1 CATACGGAGTTCATTCCATGTCTAAG
34535894 CATACGAAGT
Statistics
Matches: 262, Mismatches: 70, Indels: 26
0.73 0.20 0.07
Matches are distributed among these distances:
157 5 0.02
158 79 0.30
159 58 0.22
160 62 0.24
161 54 0.21
162 4 0.02
ACGTcount: A:0.20, C:0.25, G:0.29, T:0.25
Consensus pattern (158 bp):
CATACGGAGTTCATTCCATGTCTAAGATCAGATCAGACCGAGGGTTACGGCAGCAGGATCAACAG
CACGTAGGGGGGATCGGGTCGATCCTCGGCTTGTGCATTCTACCTCTCCGGTCGGCTGAGCGCCC
GCACGCTCGTTTCGTGGGTTGGCTTAGT
Found at i:34535897 original size:26 final size:26
Alignment explanation
Indices: 34535868--34535919 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
34535858 TTGGCTTAGT
*
34535868 CATACGGAGTTCATT-CCATGTCTAAG
1 CATACGAAGTTCATTCCCA-GTCTAAG
34535894 CATACGAAGTTCATTCCCAGTCTAAG
1 CATACGAAGTTCATTCCCAGTCTAAG
34535920 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (26 bp):
CATACGAAGTTCATTCCCAGTCTAAG
Found at i:34536838 original size:184 final size:183
Alignment explanation
Indices: 34536528--34536995 Score: 578
Period size: 184 Copynumber: 2.6 Consensus size: 183
34536518 ACCACCCGTT
** * * *
34536528 CGATCCCCGGCTTGCGCATCCTACCTCTCTGGTCGGCTGAGCACCCGCACGCTCGTTTCGTGGGT
1 CGATCCCCGGCTTATGCATTCTGCCTCTCTGATCGGCTGAGCACCCGCACGCTCGTTTCGTGGGT
* * * ** *
34536593 TGACTTAGGCATATGGAGTTCATCCCCCGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCG
66 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCG
* * * *
34536658 GACCGGACCGAGGGTTGCGGCAGCAGGATCAATAGTACGCA-GGGGGGATCGAAC
131 GACCGG-CCGAGGGTTGCGCCAGCAGGATCAACAGCACGCAGGGGGGGACCG-AC
* * * *
34536712 CGATCCCCGGCTTATGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACACTCGTTTCGTGGGT
1 CGATCCCCGGCTTATGCATTCTGCCTCTCTGATCGGCTGAGCACCCGCACGCTCGTTTCGTGGGT
* * ** *
34536777 TGGCTGAGGGATACGGAGTTCATTCCATGTCTAAGCATATGGAGTTCATTCCCAATCTAAGATTG
66 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCG
* * * **
34536842 GACCGGCCGAGGGTTGTGCCAGTAGGATCGACAGCACGCAGGGGGGGACCGGG
131 GACCGGCCGAGGGTTGCGCCAGCAGGATCAACAGCACGCAGGGGGGGACCGAC
* * * ** * *
34536895 CAATCTCCGACTTATGCATTCTGCCTCTCTGATCGGCTGAGCACGTGCATGCTCGTTTCATGGGT
1 CGATCCCCGGCTTATGCATTCTGCCTCTCTGATCGGCTGAGCACCCGCACGCTCGTTTCGTGGGT
*
34536960 TGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGC
66 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
34536996 CCAGCCGAAT
Statistics
Matches: 240, Mismatches: 43, Indels: 3
0.84 0.15 0.01
Matches are distributed among these distances:
183 115 0.48
184 125 0.52
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.24
Consensus pattern (183 bp):
CGATCCCCGGCTTATGCATTCTGCCTCTCTGATCGGCTGAGCACCCGCACGCTCGTTTCGTGGGT
TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCG
GACCGGCCGAGGGTTGCGCCAGCAGGATCAACAGCACGCAGGGGGGGACCGAC
Found at i:34536962 original size:183 final size:184
Alignment explanation
Indices: 34536551--34536995 Score: 570
Period size: 183 Copynumber: 2.4 Consensus size: 184
34536541 GCGCATCCTA
* * *
34536551 CCTCTCTGGTCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCAT
1 CCTCTCTGATCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT
* ** * *
34536616 CCCCCGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAG
66 TCCATGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGCGCCAG
* * * * *
34536681 CAGGATCAATAGTACGCAGGGGGGATCGAACCGATCCCCGGCTTATGCATTCTG
131 CAGGATCAACAGCACGCAGGGGGGACCGAACCAATCCCCGACTTATGCATTCTG
* * * * * *
34536735 CCTCTCCGACCGGCTGAGCGCCCGCACACTCGTTTCGTGGGTTGGCTGAGGGATACGGAGTTCAT
1 CCTCTCTGATCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT
** * *
34536800 TCCATGTCTAAGCATATGGAGTTCATTCCCAATCTAAGATTGGACCGG-CCGAGGGTTGTGCCAG
66 TCCATGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGCGCCAG
* * ** *
34536864 TAGGATCGACAGCACGCAGGGGGGGACCG-GGCAATCTCCGACTTATGCATTCTG
131 CAGGATCAACAGCACGCA-GGGGGGACCGAACCAATCCCCGACTTATGCATTCTG
** * * *
34536918 CCTCTCTGATCGGCTGAGCACGTGCATGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCAT
1 CCTCTCTGATCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT
34536983 TCCATGTCTAAGC
66 TCCATGTCTAAGC
34536996 CCAGCCGAAT
Statistics
Matches: 221, Mismatches: 39, Indels: 3
0.84 0.15 0.01
Matches are distributed among these distances:
183 115 0.52
184 106 0.48
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (184 bp):
CCTCTCTGATCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT
TCCATGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGCGCCAG
CAGGATCAACAGCACGCAGGGGGGACCGAACCAATCCCCGACTTATGCATTCTG
Found at i:34538030 original size:26 final size:26
Alignment explanation
Indices: 34537994--34538046 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34537984 GTTGGCTTAG
*
34537994 GCATACGGAGTTC-ATTCTATGTCTAA
1 GCATACGGAGTTCAATCCTA-GTCTAA
34538020 GCATACGGAGTTCAATCCTAGTCTAA
1 GCATACGGAGTTCAATCCTAGTCTAA
34538046 G
1 G
34538047 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCAATCCTAGTCTAA
Found at i:34538761 original size:26 final size:26
Alignment explanation
Indices: 34538731--34538783 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
34538721 GTTGACTTAG
34538731 GCATACAGAGTTCA-TCCTCAGTCTAA
1 GCATACAGAGTTCATTCC-CAGTCTAA
34538757 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
34538783 G
1 G
34538784 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:34539237 original size:26 final size:26
Alignment explanation
Indices: 34539185--34539237 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
34539175 GTTGACTTAG
* *
34539185 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCACAGTATAA
* *
34539211 GCATACAGAGTTCATTCATAGTATAA
1 GCATACAGAGTTCATCCACAGTATAA
34539237 G
1 G
34539238 ATCGGATCGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.34, C:0.23, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCACAGTATAA
Found at i:34539904 original size:171 final size:170
Alignment explanation
Indices: 34539583--34539947 Score: 384
Period size: 171 Copynumber: 2.1 Consensus size: 170
34539573 TTGTGGCAGT
* * * * * *
34539583 AGGATTGATAGCACGC-AGGGGGGTCCGAGCCAATCCCTGGCTTGTGCATTCTACCTCTCCATCC
1 AGGATCGACAGCACGCAAGGGGGGTCAGAGCCAATCCCCGGCTTATGAATTCTACCTCTCCATCC
** * * * * *
34539647 AACTGAGTGCCCGCACGTTCGTTTCTTGGGTTGGCTTAAGCATACGGAGTTCATTCCCAGTCTAA
66 AACTGAGCACCCGCAAGCTCGTTTCATGGGTTGGCTTAAGCATACGGAGCTCATTCCCAGTCCAA
* *
34539712 GATCGGACTGGACAAAGGGTTGTGGCAGCAGGACC-AGCAA
131 GACCAGACTGGACAAAGGGTTGTGGCAGCAGGACCTA-CAA
* *
34539752 CAGGATCGACAGCACGCAAGGGGGGATCAGA-CCGATCCCCGGCTTATGAATTCTACCTCTTCGA
1 -AGGATCGACAGCACGCAAGGGGGG-TCAGAGCCAATCCCCGGCTTATGAATTCTACCTC-TCCA
* * *
34539816 -CCGACTGAGCACCCGCAAGCTCGTTTCATGGGTTGGCTTAGGGATACGGAGCTCATT-CCATGT
63 TCCAACTGAGCACCCGCAAGCTCGTTTCATGGGTTGGCTTAAGCATACGGAGCTCATTCCCA-GT
* *
34539879 CCAAGCCCCAG-CTGGATC-GAGGGTTGTGGCAGCAGGACCTACAA
127 CCAAG-ACCAGACTGGA-CAAAGGGTTGTGGCAGCAGGACCTACAA
* *
34539923 TGAGATCGACAGCACGGAGAGGGGG
1 AG-GATCGACAGCACGCA-AGGGGG
34539948 ACCGGGCTGA
Statistics
Matches: 162, Mismatches: 24, Indels: 16
0.80 0.12 0.08
Matches are distributed among these distances:
170 18 0.11
171 127 0.78
172 17 0.10
ACGTcount: A:0.23, C:0.27, G:0.30, T:0.21
Consensus pattern (170 bp):
AGGATCGACAGCACGCAAGGGGGGTCAGAGCCAATCCCCGGCTTATGAATTCTACCTCTCCATCC
AACTGAGCACCCGCAAGCTCGTTTCATGGGTTGGCTTAAGCATACGGAGCTCATTCCCAGTCCAA
GACCAGACTGGACAAAGGGTTGTGGCAGCAGGACCTACAA
Found at i:34540238 original size:26 final size:26
Alignment explanation
Indices: 34540208--34540257 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
34540198 GTTGACTTAG
34540208 GCATACGGAGTTCA-TCCACAGTCTCA
1 GCATACGGAGTTCATTCC-CAGTCTCA
*
34540234 GCATATGGAGTTCATTCCCAGTCT
1 GCATACGGAGTTCATTCCCAGTCT
34540258 AAGATCGGAC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTCA
Found at i:34540699 original size:158 final size:157
Alignment explanation
Indices: 34540234--34540735 Score: 483
Period size: 158 Copynumber: 3.2 Consensus size: 157
34540224 CACAGTCTCA
* * ** *
34540234 GCATATGGAGTTCATTCCCA-GTCTAAGATCGGACCGTACCGAGGGTTACGACAGTAGGATCGAC
1 GCATATGGAGTTCATT-CCATGTCTAAGATCAGACCGGACCGAGGGTTGTGACAGCAGGATCGAC
* * * ** * * *
34540298 AGGACGCAAGGGGCATCGGG-TCGATCCCCAGCTTACGCATTCTGCCTCTCTGATCGACTGAGCA
65 AGCACGCAAGGGGGATCGGGCT-GATCCCCGGCTTGTGCATTCTGCCTCTCTGGTCGGCTGAGCG
* *
34540362 CCCGCACGCCTGTTTCATGGGTTGGCTTAG
129 CCCGCACGTC-GTTTCGTGGGTTGGCTTAG
* * ** * * ** * *
34540392 ACATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCAGACCAAGGGTTGTGGTAGCGGGACCGAC
1 GCATATGGAGTTCATTCCATGTCTAAG-ATCAGACCGGACCGAGGGTTGTGACAGCAGGATCGAC
* * * * * * *
34540456 AGCATGCAGAGGGGGACCAGGCTGATCCCTGACTTGTGCATTATGCCTCTCTGG-CTGGCTCAGC
65 AGCACGCA-AGGGGGATCGGGCTGATCCCCGGCTTGTGCATTCTGCCTCTCTGGTC-GGCTGAGC
* *
34540520 GCCTGCACGCTCGTTTCGTGGGTTGACTTAG
128 GCCCGCACG-TCGTTTCGTGGGTTGGCTTAG
* * ** *
34540551 GCATATGGAGTACATTCCCA-GTCTAAGATCAGAACGGATTGAGGGTTGTGACAGCAAGATCGAC
1 GCATATGGAGTTCATT-CCATGTCTAAGATCAGACCGGACCGAGGGTTGTGACAGCAGGATCGAC
* * *
34540615 AGCACGTAAGGGGGATCGGGCTGATCCCCGGCTTGTGCATTCTACCTCTCCGGTCGGCTGAGCGC
65 AGCACGCAAGGGGGATCGGGCTGATCCCCGGCTTGTGCATTCTGCCTCTCTGGTCGGCTGAGCGC
*
34540680 CCGCACGTTCGTTTTGTGGGTTGGCTTAG
130 CCGCACG-TCGTTTCGTGGGTTGGCTTAG
**
34540709 GCATGCGGAGTTCATTCCATGTCTAAG
1 GCATATGGAGTTCATTCCATGTCTAAG
34540736 CATACGGAGT
Statistics
Matches: 268, Mismatches: 66, Indels: 20
0.76 0.19 0.06
Matches are distributed among these distances:
157 6 0.02
158 144 0.54
159 113 0.42
160 5 0.02
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (157 bp):
GCATATGGAGTTCATTCCATGTCTAAGATCAGACCGGACCGAGGGTTGTGACAGCAGGATCGACA
GCACGCAAGGGGGATCGGGCTGATCCCCGGCTTGTGCATTCTGCCTCTCTGGTCGGCTGAGCGCC
CGCACGTCGTTTCGTGGGTTGGCTTAG
Found at i:34540745 original size:26 final size:26
Alignment explanation
Indices: 34540709--34540761 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34540699 GTTGGCTTAG
*
34540709 GCATGCGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
34540735 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
34540761 G
1 G
34540762 AGCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:34540886 original size:184 final size:183
Alignment explanation
Indices: 34540551--34541104 Score: 688
Period size: 184 Copynumber: 3.0 Consensus size: 183
34540541 GTTGACTTAG
* * * * *
34540551 GCATATGGAGTACATTCCCAGTCTAAGATCAGAACGGATTGAGGGTTGTGACAGCAAGATCGACA
1 GCATACGGAGTACATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAAGATCGACA
* * *
34540616 GCACGTAAGGGGGATCGGG-CTGATCCCCGGCTTGTGCATTCTACCTCTCCGGTCGGCTGAGCGC
66 GCACGTAGGGGGGATCGGGTC-GATCCCCGGCTTGCGCATTCTACCTCTCCGGCCGGCTGAGCGC
**
34540680 CCGCACGTTCGTTTTGTGGGTTGGCTTAGGCATGCGGAGTTCATTCCATGTCTAA
130 CCGCACG-TCGTTTCATGGGTTGGCTTAGGCATGCGGAGTTCATTCCATGTCTAA
* * *
34540735 GCATACGGAGTTCATTCCCAGTCTAAGAGCAGACCAGATCGAGGGTTGCGGCAGCAAGATCGACA
1 GCATACGGAGTACATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAAGATCGACA
* * * * *
34540800 GCACGTAGGGGGGACCGGGTCGAT-CCTGAGCTTACGCATTCTGCCTCTCCGACCGGCTGAGCGC
66 GCACGTAGGGGGGATCGGGTCGATCCCCG-GCTTGCGCATTCTACCTCTCCGGCCGGCTGAGCGC
* * *
34540864 CCGCACGCTCGTTTCATGGGTTGACTTAGGCATGCAGAGTTCATCCCCA-GTCTAA
130 CCGCACG-TCGTTTCATGGGTTGGCTTAGGCATGCGGAGTTCAT-TCCATGTCTAA
* * **
34540919 GCATACGGAGTCCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTACGGCAGC-AGCATCGGT
1 GCATACGGAGTACATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAAG-ATCGAC
* * * * * *
34540983 AGCACGCAGGGGGGATC-GATCCGATCCCCGGCTTGCGCATTCTTCCTCACCGGCCGACTGAGTG
65 AGCACGTAGGGGGGATCGGGT-CGATCCCCGGCTTGCGCATTCTACCTCTCCGGCCGGCTGAGCG
* *
34541047 CCCGCACGTCCGCTTCATGGGTTGGCTTAGGTATAG-GGAGTTCATTCCATGTCTAA
129 CCCGCACGT-CGTTTCATGGGTTGGCTTAGGCAT-GCGGAGTTCATTCCATGTCTAA
34541103 GC
1 GC
34541105 CCTAGCTGGA
Statistics
Matches: 318, Mismatches: 43, Indels: 18
0.84 0.11 0.05
Matches are distributed among these distances:
183 11 0.03
184 299 0.94
185 8 0.03
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (183 bp):
GCATACGGAGTACATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAAGATCGACA
GCACGTAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTACCTCTCCGGCCGGCTGAGCGCC
CGCACGTCGTTTCATGGGTTGGCTTAGGCATGCGGAGTTCATTCCATGTCTAA
Found at i:34541434 original size:26 final size:26
Alignment explanation
Indices: 34541395--34541447 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34541385 ATTGGCTTAG
34541395 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
34541421 GCATACGGATTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
34541447 G
1 G
34541448 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:34542146 original size:26 final size:26
Alignment explanation
Indices: 34542116--34542168 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34542106 GTTGACTTAG
34542116 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
34542142 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
34542168 G
1 G
34542169 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:34542483 original size:159 final size:160
Alignment explanation
Indices: 34542142--34542651 Score: 396
Period size: 159 Copynumber: 3.2 Consensus size: 160
34542132 CCCAGTCTAA
* * *
34542142 GCATATGGAGTTCATTCCCAGTCTAAG-ATCAGACC-AGACCGAGGGTTATGG-TAGTAGGATCG
1 GCATACGGAGTTCATTCCCAGTCTAAGCATCAGACCGA-ACCGAGGGTTGTGGCTA-CAGGATCG
** * * * * * * * * * * *
34542204 GTAGCATGTAG--GGGGTACCGGGTCGATCCCCCACTTACGTATTCTACCTCTCCAGCCA-ATTG
64 ACAGCACGCAGAAGGGG-ACCAGGTCGATCCCCGACTTACGCATTATGCCTTTCCAG-TAGACTC
* * * *
34542266 AGCACCCGCACGC-CCGTTTCATGGGTTGGCTTAG
127 AACGCCCGCACGCTCC-TTTCGTGGGTTGACTTAG
* * * * * ** * *
34542300 GCATAGGGAGTTCATT-CCATGTCTAAGCCTCAG-TCGGACCGAGGGTTGTGGTTATGGGATTGG
1 GCATACGGAGTTCATTCCCA-GTCTAAGCATCAGACCGAACCGAGGGTTGTGGCTACAGGATCGA
* * * ** *
34542363 CAGCACGCAGAGGGGGATC-GAGTCGATCCCCGACTTGCGCATTATGCCTTTCCAGTAGGGTCAG
65 CAGCACGCAGAAGGGGACCAG-GTCGATCCCCGACTTACGCATTATGCCTTTCCAGTAGACTCAA
* * *
34542427 CGCCTGCTCGCTCCTTTCGTGGGTTGACTTAA
129 CGCCCGCACGCTCCTTTCGTGGGTTGACTTAG
* * * *
34542459 GCATATGGAGTTCATTCCCAGTCTATG-ATCAGACCGAACTGAGGGTTGTGGCTGCAGGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATCAGACCGAACCGAGGGTTGTGGCTACAGGATCGAC
* * * * * * * *
34542523 AGCACGCAGAAGGGGACCAGGTCGATCCCCGGCTTATGCATTCTGCCTTTTCGGTCGACTGAATG
66 AGCACGCAGAAGGGGACCAGGTCGATCCCCGACTTACGCATTATGCCTTTCCAGTAGACTCAACG
* *
34542588 CCCGCACGCTCGTTCCGTGGGTTGACTTAG
131 CCCGCACGCTCCTTTCGTGGGTTGACTTAG
34542618 GCATACGGAGTTCA-TCCCAGTCTAAGCATACAGA
1 GCATACGGAGTTCATTCCCAGTCTAAGCAT-CAGA
34542652 GTTCATTCCT
Statistics
Matches: 278, Mismatches: 60, Indels: 26
0.76 0.16 0.07
Matches are distributed among these distances:
157 3 0.01
158 67 0.24
159 194 0.70
160 14 0.05
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (160 bp):
GCATACGGAGTTCATTCCCAGTCTAAGCATCAGACCGAACCGAGGGTTGTGGCTACAGGATCGAC
AGCACGCAGAAGGGGACCAGGTCGATCCCCGACTTACGCATTATGCCTTTCCAGTAGACTCAACG
CCCGCACGCTCCTTTCGTGGGTTGACTTAG
Found at i:34542646 original size:25 final size:26
Alignment explanation
Indices: 34542618--34542669 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
34542608 GTTGACTTAG
*
34542618 GCATACGGAGTTCA-TCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
34542643 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
34542669 G
1 G
34542670 ATCAGACCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 13 0.54
26 11 0.46
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:34543322 original size:26 final size:26
Alignment explanation
Indices: 34543292--34543347 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
34543282 TGGGTTGACT
34543292 TAAGCATACGGAGTTCATCCCCAGTC
1 TAAGCATACGGAGTTCATCCCCAGTC
*
34543318 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATCCCCAGTC
34543344 TAAG
1 TAAG
34543348 ATCAAACTGG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.25
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATCCCCAGTC
Found at i:34543866 original size:179 final size:177
Alignment explanation
Indices: 34543543--34543894 Score: 488
Period size: 179 Copynumber: 2.0 Consensus size: 177
34543533 CGAGACCAAC
* * * ** *
34543543 AGCACGTAGAGGGGGACCGGGCTGATCTTCGGCTTGCGCATTATGCCTCTTCGACCGGCTCAGTG
1 AGCACGCAGAGGGGGACCGAGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGACCGGCTCAATG
* * * *
34543608 CCCGCATGCTCATTTCGTGGGTTGACTTATGCATACGTAGTTCATTCCCAGTCTAAGATCAGACC
66 CCCGCACGCTCATTTCGTGGGTTGAATTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
* * *
34543673 AAACTGATGGTTGTGGTAGCAGGATCGACAGCACGTAGGGGGGACCGAT
131 AAACCGAGGGTTGTGGTAGCAGCATCGA-AG-ACGTAGGGGGGACCGAT
* * *
34543722 AGCACGCAGAGGGGGATCGAGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGGCCTGCTCAATG
1 AGCACGCAGAGGGGGACCGAGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGACCGGCTCAATG
* * **
34543787 CCCGCACGTTTATTTCGTGGGTTGAATTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATT
66 CCCGCACGCTCATTTCGTGGGTTGAATTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
**
34543852 GGACCGAGGGTTGTGGTAGCAGCATCGAAGACGTAGGGGGGAC
131 AAACCGAGGGTTGTGGTAGCAGCATCGAAGACGTAGGGGGGAC
34543895 TGAGCCGATC
Statistics
Matches: 151, Mismatches: 22, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
177 13 0.09
178 2 0.01
179 136 0.90
ACGTcount: A:0.21, C:0.24, G:0.31, T:0.24
Consensus pattern (177 bp):
AGCACGCAGAGGGGGACCGAGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGACCGGCTCAATG
CCCGCACGCTCATTTCGTGGGTTGAATTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
AAACCGAGGGTTGTGGTAGCAGCATCGAAGACGTAGGGGGGACCGAT
Found at i:34544360 original size:26 final size:26
Alignment explanation
Indices: 34544307--34544362 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
34544297 TAGGTTGACT
* *
34544307 TAAGCATACGGAGTTCATCCCTAGTC
1 TAAGCATACAGAGTTCATCCCTAATC
34544333 TAAGCATACAGAGTTCATTCCC-AATC
1 TAAGCATACAGAGTTCA-TCCCTAATC
34544359 TAAG
1 TAAG
34544363 ATCAAACCAG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
26 23 0.85
27 4 0.15
ACGTcount: A:0.32, C:0.25, G:0.16, T:0.27
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATCCCTAATC
Found at i:34544719 original size:158 final size:156
Alignment explanation
Indices: 34544336--34544827 Score: 433
Period size: 158 Copynumber: 3.1 Consensus size: 156
34544326 CCTAGTCTAA
* * * ** * *
34544336 GCATACAGAGTTCATTCCCAATCTAAGATCAAACCAGACTGAGGGTTGCAGCATCATGATCGGCA
1 GCATACGGAGTTCATTCCCAATCTAAGATCAGA-CAGACTGAAGGTTGTGGCAGCAAGATCGGCA
* * *
34544401 GTACGCAGGGGGGACCGGGCCGATCCCTGGCTTCCGCATTTTGCCTC-CCTGGCCGACTGAGCGC
65 GCACGCAGGGGGGACCGGGCCGATCCC-GGCTTGCGCATTATGCCTCTCC-GGCCGACTGAGCGC
* * * *
34544465 CAGCACACCTGTATCGTGGGTTGGCTTAG
128 CCGCACGCTTGTTTCGTGGGTTGGCTTAG
* * * ** * * ** *
34544494 GCAGAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCGA-TGGAGGATTGTGGCAGCGGGACCGG
1 GCATACGGAGTTCATTCCCA-ATCTAAG-ATCAGACAGACTGAAGG-TTGTGGCAGCAAGATCGG
* * * * * *
34544556 TAGCACGCAGAGGGGGACCGGGCCAATCCTCGGGTTGTGCATTATGCCTCTTCGGCCTG-CTTAG
63 CAGCACGCAG-GGGGGACCGGGCCGATCC-CGGCTTGCGCATTATGCCTCTCCGGCC-GACTGAG
* *
34544620 C-CCCGCACGCTTGTTTCGTGGGTTGACTTAT
125 CGCCCGCACGCTTGTTTCGTGGGTTGGCTTAG
*
34544651 GCATACGGAGTTCATTCCCAATCTAAGATCAGATCAGACTGAAGGTTGTGGCAGCAAGATCGACA
1 GCATACGGAGTTCATTCCCAATCTAAGATCAGA-CAGACTGAAGGTTGTGGCAGCAAGATCGGCA
* * * * * *
34544716 GCACTCAGGGGGGGATCAGGCCGATCCCGACTTGGGCATTCTGTCC-CTCCGGTCCGACTGAGCG
65 GCACGCA-GGGGGGACCGGGCCGATCCCGGCTTGCGCATTATG-CCTCTCCGG-CCGACTGAGCG
* *
34544780 CTCCACACGCTCGTTTCGT-GGTTGGCTTAG
127 C-CCGCACGCTTGTTTCGTGGGTTGGCTTAG
34544810 GCATACGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
34544828 ATGTCTAAGC
Statistics
Matches: 260, Mismatches: 57, Indels: 33
0.74 0.16 0.09
Matches are distributed among these distances:
156 7 0.03
157 88 0.34
158 111 0.43
159 39 0.15
160 15 0.06
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.23
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCCAATCTAAGATCAGACAGACTGAAGGTTGTGGCAGCAAGATCGGCAG
CACGCAGGGGGGACCGGGCCGATCCCGGCTTGCGCATTATGCCTCTCCGGCCGACTGAGCGCCCG
CACGCTTGTTTCGTGGGTTGGCTTAG
Found at i:34544846 original size:26 final size:26
Alignment explanation
Indices: 34544810--34544862 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34544800 GTTGGCTTAG
34544810 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
34544836 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
34544862 G
1 G
34544863 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:34545564 original size:26 final size:26
Alignment explanation
Indices: 34545528--34545580 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
34545518 GTTGACTTAG
34545528 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
34545554 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
34545580 G
1 G
34545581 ATCAGATCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:34545862 original size:159 final size:158
Alignment explanation
Indices: 34545554--34545937 Score: 389
Period size: 159 Copynumber: 2.4 Consensus size: 158
34545544 CCCAGTCTAA
* ** * *
34545554 GCATACGGAGTTCATCCCCA-GTCTAAGATC-AGATCGGATCGAGGGTTGCGGCAGCAGGATCGA
1 GCATACGGAGTTCAT-TCCATGTCTAAGCCCTAG-CCGGACCGAGGGTTGCGGCAGCAGGATCGA
* * * * *
34545617 CAGCACGCAAGGGGGACCGGATCGATCCCTGGCTTGCGCATTCTACCTCTCTGGTCGGCTGAGCA
64 CAGCACGCAAGGGGGACCAGATCGATCCCTGGCTTACGCATTATACCTCTCTGGCCGGCTCAGCA
* *
34545682 CCCGTACACCCGTTTCGTGGGTTGGCTTAG
129 CCCGCACACCCGTTTCATGGGTTGGCTTAG
* * * * *
34545712 GCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCGGACCGAGGGTTGTGGTAGCGGGATCGACG
1 GCATACGGAGTTCATTCCATGTCTAAGCCCTAGCCGGACCGAGGGTTGCGGCAGCAGGATCGACA
* * * * *
34545777 GCACGCAGAGGGGGACCA-AGCTGATGCCTGGCTTATGCATTATGCCT-TTTCGGCCGGCTCAGC
66 GCACGCA-AGGGGGACCAGATC-GATCCCTGGCTTACGCATTATACCTCTCT-GGCCGGCTCAGC
* *
34545840 ACCCGCACGCTCGTTTCATGGGTTGGCTTAG
128 ACCCGCACACCCGTTTCATGGGTTGGCTTAG
* * * *** ** * *
34545871 GCATACGGAGTTCATTCTATGTTTAAGCCCAAGTTAGACCGAGGGTTATGGCAGTAGGAGCGACA
1 GCATACGGAGTTCATTCCATGTCTAAGCCCTAGCCGGACCGAGGGTTGCGGCAGCAGGATCGACA
34545936 GC
66 GC
34545938 GGGATCTGCA
Statistics
Matches: 184, Mismatches: 37, Indels: 9
0.80 0.16 0.04
Matches are distributed among these distances:
157 3 0.02
158 59 0.32
159 122 0.66
ACGTcount: A:0.20, C:0.26, G:0.32, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGCCCTAGCCGGACCGAGGGTTGCGGCAGCAGGATCGACA
GCACGCAAGGGGGACCAGATCGATCCCTGGCTTACGCATTATACCTCTCTGGCCGGCTCAGCACC
CGCACACCCGTTTCATGGGTTGGCTTAG
Found at i:34546083 original size:26 final size:26
Alignment explanation
Indices: 34546053--34546105 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34546043 GTTAACTTAG
34546053 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
* *
34546079 GCATATGGAGTTCATTCCCTGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
34546105 G
1 G
34546106 ATCGGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTCATCCCCAGTCTAA
Found at i:34546400 original size:159 final size:157
Alignment explanation
Indices: 34546205--34546580 Score: 377
Period size: 156 Copynumber: 2.4 Consensus size: 157
34546195 GCCGACTGAG
* * * *
34546205 CGCCCGCACGC-CTGTTTCATGGTTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA
1 CGCCCGTACGCTC-GTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCA
* ** * *
34546269 GCCGGACCGAGGGTTGTGGCAGCAAGA-CTGATAGCACGCAGAAGGGAACCGGGCTGATCCTCAG
65 GCCGGACAGAGGGTTGCAGCAGCAAGATC-GACAGCACGCAG--GGGAACCGGGCTGATCCTCAA
* **
34546333 CTTGCGCATTATGCCACT-TCGA-CTGGCTT-AA
127 CTTGCGCATTATG-C-CTGTCCAGCCAG-TTGAA
* * * * * * * *
34546364 CGCCCGTACGCTCGTTTCATGGGTTGACTTATGCATATGAAGTTCATTCTAAGTGTAAG-ATCAG
1 CGCCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAG
* * * * * *
34546428 CCGGACAGAGGGTTGCAGTAGCAGGATCGACAGCATGCAGGGGGATCGGGTTGATCCTCAACTTG
66 CCGGACAGAGGGTTGCAGCAGCAAGATCGACAGCACGCAGGGGAACCGGGCTGATCCTCAACTTG
* *
34546493 CGCATTCTGCCTGTCCAGCCAGTTGAG
131 CGCATTATGCCTGTCCAGCCAGTTGAA
* *
34546520 CGCCCGTACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
1 CGCCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
34546581 TATGGATTCC
Statistics
Matches: 175, Mismatches: 36, Indels: 14
0.78 0.16 0.06
Matches are distributed among these distances:
154 2 0.01
155 6 0.03
156 82 0.47
157 1 0.01
158 34 0.19
159 49 0.28
160 1 0.01
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.25
Consensus pattern (157 bp):
CGCCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAG
CCGGACAGAGGGTTGCAGCAGCAAGATCGACAGCACGCAGGGGAACCGGGCTGATCCTCAACTTG
CGCATTATGCCTGTCCAGCCAGTTGAA
Found at i:34547306 original size:26 final size:26
Alignment explanation
Indices: 34547270--34547322 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
34547260 GTTGACTTAG
34547270 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
34547296 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
34547322 G
1 G
34547323 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:34548645 original size:158 final size:157
Alignment explanation
Indices: 34548229--34549145 Score: 874
Period size: 158 Copynumber: 5.7 Consensus size: 157
34548219 AGCAGCACAC
* * *
34548229 AGGGGGACCAGGCCGATCCTCAGCTTGCGCATTCTGCCTCTCCGATTCGGCTTGAGGCGCCCGCA
1 AGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCG--T-GGC-TGA-GCGCCCGCA
* * * *
34548294 CGCCCGTTTCATGGGTTCGTTTAGGCATAGGGAGTTCCACTTCGCATGTCTAAAGCCCCAACCGG
61 CGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTT-CA-TTC-CATGTCT-AAGCCCCAACCGG
* *
34548359 ACCGAGGGTTGTGGCAGCGGGCACCGACACGCACGTAG
122 ACCGAGGGTTATGGCAGCGGG-ACCGATA-GCACGTAG
* * * *
34548397 AGGGGTGACCGGGACTGATCCCTGGCTTGCGCATTCTG-CTCTTCCGACCGGCTGAGCGCCTGCA
1 AGGGG-GACCGGG-CCGATCCCCGGCTTGCGCATTCTGCCTC-TCCG--TGGCTGAGCGCCCGCA
* * *
34548461 CGCCCGTTTCGTGGTTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCAGACCG
61 CGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCG
*
34548526 AGGGCTATGGCAGCGGGACCGATAGCACGTAG
126 AGGGTTATGGCAGCGGGACCGATAGCACGTAG
* * * * *
34548558 AGGGGGACCGGGCCGATCCCCGGCTCGCGCATTATGCCTCTCCAGTTGCTCAGCGCCCGCACGCT
1 AGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCC-GTGGCTGAGCGCCCGCACGCC
* ** * *
34548623 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAA-CATCAGACCGGATCAAG
65 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCA-ACCGGACCGAG
*** * * * *
34548686 GGTTGCAGCAGCAGGATCGGTAGCACGCAG
128 GGTTATGGCAGCGGGACCGATAGCACGTAG
* * * * * *
34548716 -GGGGGATCAGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCGCCCGTACGC
1 AGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCG--TGGCTGAGCGCCCGCACGC
* * * *
34548780 CCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGGAACGAGG
64 CCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGG
* * *
34548845 GTTGTGGCAGCGAGACCGGTAGCACGTAG
129 GTTATGGCAGCGGGACCGATAGCACGTAG
* * ** * *
34548874 AGGGGGACTGGGCCGATCCCCGACTTGCATATTATGCCTCTCCGGTCGGCTCAGCGCCCGCACGC
1 AGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCC-GT-GGCTGAGCGCCCGCACGC
* * * ** ** *
34548939 TCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATCGGACCGGACTGAG
64 CCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAACCGGACCGAG
* ** * * * *
34549003 GGTTACGATAGCAGGATCGACAGCACGCAG
128 GGTTATGGCAGCGGGACCGATAGCACGTAG
* * * * *
34549033 -GGGGGACCGGGTCAATCCCCGGCTTGCGCATTCTGCCTCTTCGGTCGGTTGAGCGCCCGCACTC
1 AGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTC-TCCGT-GGCTGAGCGCCCGCACGC
* * *
34549097 TCGTTTCATGGGTTGGCTTAGGCATACGCAGTTCATTCCATGTCTAAGC
64 CCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
34549146 ATACAGAGTT
Statistics
Matches: 616, Mismatches: 116, Indels: 44
0.79 0.15 0.06
Matches are distributed among these distances:
156 1 0.00
157 46 0.07
158 259 0.42
159 148 0.24
160 15 0.02
161 13 0.02
162 6 0.01
163 31 0.05
164 7 0.01
165 3 0.00
166 2 0.00
167 40 0.06
168 8 0.01
169 12 0.02
170 25 0.04
ACGTcount: A:0.17, C:0.30, G:0.31, T:0.22
Consensus pattern (157 bp):
AGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGTGGCTGAGCGCCCGCACGCCC
GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGT
TATGGCAGCGGGACCGATAGCACGTAG
Found at i:34549088 original size:317 final size:316
Alignment explanation
Indices: 34548414--34549145 Score: 1047
Period size: 317 Copynumber: 2.3 Consensus size: 316
34548404 ACCGGGACTG
* * *
34548414 ATCCCTGGCTTGCGCATTCTG-CTCTTCCGACCGGCTGAGCGCCTGCACGCCCGTTTCGTGGTTT
1 ATCCCCGGCTTGCGCATTCTGCCTCTT-CGACCGGCTGAGCGCCCGCACGCCCGTTTCGTGGGTT
* *
34548478 GGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCAGACCGAGGGCTATGGCAGCGGG
65 GGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCAGAACGAGGGCTATGGCAGCGAG
* * *
34548543 ACCGATAGCACGTAGAGGGGGACCGGGCCGATCCCCGGCTCGCGCATTATGCCTCTCCAGTTGCT
130 ACCGATAGCACGTAGAGGGGGACCGGGCCGATCCCCGACTCGCACATTATGCCTCTCCAGTGGCT
*
34548608 CAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAACATC
195 CAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAACATC
* ** * *
34548673 AGACCGGATCAAGGGTTGCAGCAGCAGGATCGGTAGCACGCAGGGGGGATCAGGTCG
260 AGACCGGATCAAGGGTTACAGCAGCAGGATCGACAGCACGCAGGGGGGACCAGGTCA
* * *
34548730 ATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCGCCCGTACGCCCGTTTCGTGGGTTG
1 ATCCCCGGCTTGCGCATTCTGCCTCTTCGACCGGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTG
* ** * *
34548795 GCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGGAACGAGGGTTGTGGCAGCGAGA
66 GCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCAGAACGAGGGCTATGGCAGCGAGA
* * * * *
34548860 CCGGTAGCACGTAGAGGGGGACTGGGCCGATCCCCGACTTGCATATTATGCCTCTCCGGTCGGCT
131 CCGATAGCACGTAGAGGGGGACCGGGCCGATCCCCGACTCGCACATTATGCCTCTCCAGT-GGCT
*
34548925 CAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
195 CAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAACATC
* * * *
34548990 GGACCGGA-CTGAGGGTTAC-GATAGCAGGATCGACAGCACGCAGGGGGGACCGGGTCA
260 AGACCGGATC-AAGGGTTACAG-CAGCAGGATCGACAGCACGCAGGGGGGACCAGGTCA
** * * * *
34549047 ATCCCCGGCTTGCGCATTCTGCCTCTTCGGTCGGTTGAGCGCCCGCACTCTCGTTTCATGGGTTG
1 ATCCCCGGCTTGCGCATTCTGCCTCTTCGACCGGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTG
* *
34549112 GCTTAGGCATACGCAGTTCATTCCATGTCTAAGC
66 GCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
34549146 ATACAGAGTT
Statistics
Matches: 369, Mismatches: 43, Indels: 7
0.88 0.10 0.02
Matches are distributed among these distances:
316 167 0.45
317 202 0.55
ACGTcount: A:0.17, C:0.30, G:0.31, T:0.22
Consensus pattern (316 bp):
ATCCCCGGCTTGCGCATTCTGCCTCTTCGACCGGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTG
GCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCAGAACGAGGGCTATGGCAGCGAGA
CCGATAGCACGTAGAGGGGGACCGGGCCGATCCCCGACTCGCACATTATGCCTCTCCAGTGGCTC
AGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAACATCA
GACCGGATCAAGGGTTACAGCAGCAGGATCGACAGCACGCAGGGGGGACCAGGTCA
Found at i:34549148 original size:26 final size:26
Alignment explanation
Indices: 34549118--34549170 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
34549108 GTTGGCTTAG
34549118 GCATAC-GCAGTTCATT-CCATGTCTAA
1 GCATACAG-AGTTCATTCCCA-GTCTAA
34549144 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
34549170 G
1 G
34549171 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:34549295 original size:184 final size:184
Alignment explanation
Indices: 34548960--34549329 Score: 526
Period size: 184 Copynumber: 2.0 Consensus size: 184
34548950 GTTGACTTAG
* * *
34548960 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTACGATAGCAGGATCGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTACGACAGCAAGATCGACA
* * *
34549025 GCACGCAGGGGGGACCGGGTCAATCCCCGGCTTGCGCATTCTGCCTCTTCGGTCGGTTGAGCGCC
66 GCACCCAGGGGGGACCGGGTCAATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCC
* * *
34549090 CGCACTCTCGTTTCATGGGTTGGCTTAGGCATACGCAGTTCATTCCATGTCTAA
131 CGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCCAA
* * **
34549144 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGA-TCGAGGGTTGCGGCAGCAAGATCGGT
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACT-GAGGGTTACGACAGCAAGATCGAC
* * * * *
34549208 AGCACCCAGGGGGGATCGGGTCGATCCCTGGCTTGCGTATTCTGCCTCTCCGGTCGGCTGAGGGC
65 AGCACCCAGGGGGGACCGGGTCAATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGC
* * * *
34549273 CTGTACGCTTGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCCAA
130 CCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCCAA
34549328 GC
1 GC
34549330 CCCAACCGGA
Statistics
Matches: 163, Mismatches: 22, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
183 1 0.01
184 162 0.99
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.24
Consensus pattern (184 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTACGACAGCAAGATCGACA
GCACCCAGGGGGGACCGGGTCAATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCC
CGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCCAA
Found at i:34549525 original size:340 final size:340
Alignment explanation
Indices: 34549082--34549724 Score: 950
Period size: 340 Copynumber: 1.9 Consensus size: 340
34549072 TTCGGTCGGT
* * * *
34549082 TGAGCGCCCGCACTCTCGTTTCATGGGTTGGCTTAGGCATACGCAGTTCATTCCATGTCTAAGCA
1 TGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGCAGTTCATCCCATGTCTAAGCA
*
34549147 TACAGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCAAGATCGGTAGCA
66 TACAGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCAAGATCGATAGCA
* * * * *
34549212 CCCAGGGGGGATCGGGTCGATCCCTGGCTTGCGTATTCTGCCTCTCCGGTCGGCTGAGGGCCTGT
131 CCCAGGGGGGATCGGGTCGATCCCCGGCTTACGCATTCTGCCTCTCCGGTCGGCTGAGGGCCCGC
* *
34549277 ACGCTTGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCCAAGCCCCAACCGGACC
196 ACGCCTGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCCAAGCCCCAACCAGACC
34549342 GAGGGTTGTGGCAGCAGGATC-GGAAGCATGCAGAAAGGGACCGAGGCATTATACCTCTCTGACT
261 GAGGGTTGTGGCAGCAGGA-CGGGAAGCATGCAGAAAGGGACCGAGGCATTATACCTCTCTGACT
34549406 GGCTTGTCCAGCCGGC
325 GGCTTGTCCAGCCGGC
* *
34549422 TGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCC-TAGTCTAAGC
1 TGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGCAGTTCATCCCAT-GTCTAAGC
* *
34549486 ATA-TGAAGTTCATTCCCAGTCTAAGATCGGACTGGATCGAGGGTTGCGGCAGCAAGATCGATAG
65 ATACAG-AGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCAAGATCGATAG
** *
34549550 CATGCAGGGGGGATCGGGTCGATCCCCGGCTTACGCATTCTGCCTCTCCGGTCGGCTGAGTGCCC
129 CACCCAGGGGGGATCGGGTCGATCCCCGGCTTACGCATTCTGCCTCTCCGGTCGGCTGAGGGCCC
* * * * * * *
34549615 GCATGCCTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTTATTCCATGTCTAAGCCCCAGCTAGA
194 GCACGCCTGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCCAAGCCCCAACCAGA
* * * * **
34549680 TCGAGGGTTGTGGTAGCGGGACGGGCAGCATGCAGAGTGGGACCG
259 CCGAGGGTTGTGGCAGCAGGACGGGAAGCATGCAGAAAGGGACCG
34549725 GGTCGATCCC
Statistics
Matches: 268, Mismatches: 32, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
339 3 0.01
340 265 0.99
ACGTcount: A:0.19, C:0.26, G:0.32, T:0.24
Consensus pattern (340 bp):
TGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGCAGTTCATCCCATGTCTAAGCA
TACAGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCAAGATCGATAGCA
CCCAGGGGGGATCGGGTCGATCCCCGGCTTACGCATTCTGCCTCTCCGGTCGGCTGAGGGCCCGC
ACGCCTGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCCAAGCCCCAACCAGACC
GAGGGTTGTGGCAGCAGGACGGGAAGCATGCAGAAAGGGACCGAGGCATTATACCTCTCTGACTG
GCTTGTCCAGCCGGC
Found at i:34549792 original size:159 final size:157
Alignment explanation
Indices: 34549492--34549987 Score: 491
Period size: 159 Copynumber: 3.1 Consensus size: 157
34549482 AAGCATATGA
* * * * * * * *
34549492 AGTTCATTCCCAGTCTAAGATCGGACTGGATCGAGGGTTGCGGCAGCAAGATCGATAGCATGCAG
1 AGTTCATT-CCAGTCTAAGACCAGACTAGACCGAGGGTTACGGTAGCAGGATCGACAGCATGCAG
* * * * *
34549557 GGGGGATCGGGTCGATCCCCGGCTTACGCATTCTGCCTCTCCGGTCGGCTGAGTGCCCGCATGC-
65 AGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGTGCCCGCACGCT
* *
34549621 CTGTTTCGTGGGTTGGCTTAGGCATAGGG
130 C-GTTTCATGGGTTGGCTTAGGCATACGG
* * * ** * *
34549650 AGTTTATTCCATGTCTAAGCCCCAG-CTAGATCGAGGGTTGTGGTAGCGGGA-CGGGCAGCATGC
1 AGTTCATTCCA-GTCTAAG-ACCAGACTAGACCGAGGGTTACGGTAGCAGGATC-GACAGCATGC
* * * * * *
34549713 AGAGTGGGACCGGGTCGATCCCTGGCTTGCGCATTATGCCTCTTCGGTCGGTTCAGCGCCCGTAC
63 AGAG-GGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGTGCCCGCAC
* * *
34549778 GCTCATTTCATGGGTTGACTTATGCATACGG
127 GCTCGTTTCATGGGTTGGCTTAGGCATACGG
* * * *
34549809 AGTTCATTCTCGGTCAAAGATCAGACCTGGACCGAGGGTTACGGTAGCAGGATCGACAGCA--CA
1 AGTTCATTC-CAGTCTAAGACCAGA-CTAGACCGAGGGTTACGGTAGCAGGATCGACAGCATGCA
* * * *
34549872 TAGGGAAGGCTGGGCCGATCCCCGGCTTGCGCATTCTGCCTC-TCTGGTCGGCTGAGTGCCCGCA
64 GAGGG--GACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTTC-GGTCGGCTGAGTGCCCGCA
34549936 CGCTCGTTTCATGGGTTGGCTTAGGCATACGG
126 CGCTCGTTTCATGGGTTGGCTTAGGCATACGG
34549968 AGTTCATTCCCAGTCTAAGA
1 AGTTCATT-CCAGTCTAAGA
34549988 TTTTGAGTGA
Statistics
Matches: 272, Mismatches: 53, Indels: 25
0.78 0.15 0.07
Matches are distributed among these distances:
157 6 0.02
158 55 0.20
159 180 0.66
160 30 0.11
161 1 0.00
ACGTcount: A:0.18, C:0.26, G:0.32, T:0.25
Consensus pattern (157 bp):
AGTTCATTCCAGTCTAAGACCAGACTAGACCGAGGGTTACGGTAGCAGGATCGACAGCATGCAGA
GGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGTGCCCGCACGCTC
GTTTCATGGGTTGGCTTAGGCATACGG
Found at i:34550962 original size:159 final size:158
Alignment explanation
Indices: 34550741--34551176 Score: 436
Period size: 159 Copynumber: 2.7 Consensus size: 158
34550731 TCGATAGCCC
* * * *
34550741 GCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTTCCTCTCCGGCCGGCTGAGTGCCCGCA
1 GCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGG-CTGCTGAGCGCCCGCA
* * *
34550806 CGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATATCTAAGCCCCAG-TCAGA-C
65 CGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATATCTAAGCACCAGACCAGATC
** *
34550869 TGAGGGTTGTGGCAGC-GAGACCAACAGCAT
130 -GAGGGTTAAGGCAGCAG-GACCAACAACAT
* * * * * * *
34550899 GCAGAGGGGGACCGGGCCGATCCCTGACTTGCGTATTATGCCTCTTCGGCTTGCTAAACGCCCGT
1 GCAG-GGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGC-TGCTGAGCGCCCGC
* * * * * *
34550964 ACGCTCGTTTCATGGGTTGACTTATGCATACGGAGTTCATTCC-TAGTCTAAG-ATCAGACCGGA
64 ACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATA-TCTAAGCACCAGACCAGA
* *
34551027 TCGAGGGTTAAGGCAGCAGGATCGACAACAT
128 TCGAGGGTTAAGGCAGCAGGACCAACAACAT
* * *
34551058 GCAGGTGGGGACCGAGTCGATCCCCGGTTTGCGCATTCTGCCTCTAT-GGCTGACTGAGCGCCCG
1 GCAGG-GGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCT-TCGGCTG-CTGAGCGCCCG
** * * *
34551122 CACGCTCC-TTTCGTGTCTTGGGTTAGGCATATGGAGTTCATTCCATGTCTAAGCA
63 CACGC-CCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATATCTAAGCA
34551177 TACGGAGTTC
Statistics
Matches: 222, Mismatches: 44, Indels: 22
0.77 0.15 0.08
Matches are distributed among these distances:
158 13 0.06
159 203 0.91
160 6 0.03
ACGTcount: A:0.18, C:0.28, G:0.30, T:0.24
Consensus pattern (158 bp):
GCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGCTGCTGAGCGCCCGCAC
GCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATATCTAAGCACCAGACCAGATCG
AGGGTTAAGGCAGCAGGACCAACAACAT
Found at i:34551184 original size:26 final size:26
Alignment explanation
Indices: 34551148--34551200 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34551138 CTTGGGTTAG
*
34551148 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
34551174 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
34551200 G
1 G
34551201 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:34551907 original size:26 final size:26
Alignment explanation
Indices: 34551871--34551921 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
34551861 TGACTTAGGT
34551871 ATACAGAGTTCATCCCCAATCTAAGC
1 ATACAGAGTTCATCCCCAATCTAAGC
* * *
34551897 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATCCCCAATCTAAG
34551922 ATTGGACCGG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.25
Consensus pattern (26 bp):
ATACAGAGTTCATCCCCAATCTAAGC
Found at i:34552300 original size:155 final size:157
Alignment explanation
Indices: 34552110--34552391 Score: 347
Period size: 155 Copynumber: 1.8 Consensus size: 157
34552100 GTGGCAGTGC
* * ** ** *
34552110 GATCGACAGCACATAGAGGGGGACTGGGTCAATCCCCGGCTTGCTTATTATGCCTCTCCGGTCGG
1 GATCGACAGCACATAGAGGGGGACTGGGTCAATCCCCAGCTTACGCATTATGCCTCTCCGACCGA
* * * * *
34552175 GTCAGCGCCTGCTCGCTCGTTTCGT-GGTTGACTGAGGCATATGGAGTTCATTCCC-AGTCTATG
66 CTCAGCGCCCGCACGCTCATTTCGTGGGTTGACTGAGGCATACGGAGTTCA-TCCCTAGTCTATG
34552238 ATTGGATCGGACTGAGGTTGTGCTGCAG
130 ATTGGATCGGACTGAGGTTGTGCTGCAG
** * * *
34552266 GATCGACAGCATGTAG-GGGGGA-TCGGGTCGATCCCCAGCTTACGCATTCTGCCTTTCCGACCG
1 GATCGACAGCACATAGAGGGGGACT-GGGTCAATCCCCAGCTTACGCATTATGCCTCTCCGACCG
* *
34552329 ACTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTA
65 ACTCAGCGCCCGCACGCTCATTTCGTGGGTTGACTGAGGCATACGGAGTTCATCCCTAGTCTA
34552392 AGCATACAGA
Statistics
Matches: 104, Mismatches: 19, Indels: 6
0.81 0.15 0.05
Matches are distributed among these distances:
154 1 0.01
155 60 0.58
156 43 0.41
ACGTcount: A:0.17, C:0.27, G:0.30, T:0.26
Consensus pattern (157 bp):
GATCGACAGCACATAGAGGGGGACTGGGTCAATCCCCAGCTTACGCATTATGCCTCTCCGACCGA
CTCAGCGCCCGCACGCTCATTTCGTGGGTTGACTGAGGCATACGGAGTTCATCCCTAGTCTATGA
TTGGATCGGACTGAGGTTGTGCTGCAG
Found at i:34552403 original size:26 final size:26
Alignment explanation
Indices: 34552367--34552419 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34552357 GTTGACTTAG
*
34552367 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
34552393 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
34552419 G
1 G
34552420 ATCGAATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:34552525 original size:184 final size:182
Alignment explanation
Indices: 34552218--34552565 Score: 452
Period size: 184 Copynumber: 1.9 Consensus size: 182
34552208 GAGGCATATG
* * * * * *
34552218 GAGTTCATTCCCAGTCTATGATTGGATCGGACTGAGGTTGTGCTGCAGGATCGACAGCATGTAGG
1 GAGTTCATTCCCAGTCTAAGATCGAATCGGACCGAGGTTGTGATGCAGGATCGACAGCATGCAGG
* * * * *
34552283 GGGGATCGGGTCGATCCCCAGCTTACGCATTCTGCCTTTCCGACCGACTGAGCGCCCGCACGCTC
66 GGGGACCAGGTCCATCCCCAGCTTACGCATTCTGCCTTTCCGACCGACTGAGCGCCCGCACACAC
34552348 -ATTTCGTGGGTT-GACTTAGGCATACGGAGTTCATCCCTAGTCTAAGCATACA
131 GA-TTCGTGGGTTAG-CTTAGGCATACGGAGTTCATCCCTAGTCTAAGCATACA
*
34552400 GAGTTCATTCCCAGTCTAAGATCGAATCGGACCGAGGGTTGTGATAGCAGGATCGGCAGCATGCA
1 GAGTTCATTCCCAGTCTAAGATCGAATCGGACCGA-GGTTGTGAT-GCAGGATCGACAGCATGCA
* * * * *
34552465 GGGGGGACCAGG-CCATTCCCCAGCTTGCGCATTTTGCCTCTT-TGACCGGCTGAGCGCCCGCGC
64 GGGGGGACCAGGTCCA-TCCCCAGCTTACGCATTCTGCCT-TTCCGACCGACTGAGCGCCCGCAC
*
34552528 ACACGATTCGTGGGTTAGCTTAGGCATAGGGAGTTCAT
127 ACACGATTCGTGGGTTAGCTTAGGCATACGGAGTTCAT
34552566 TCCATCTCTC
Statistics
Matches: 142, Mismatches: 18, Indels: 10
0.84 0.11 0.06
Matches are distributed among these distances:
182 31 0.22
183 10 0.07
184 97 0.68
185 4 0.03
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (182 bp):
GAGTTCATTCCCAGTCTAAGATCGAATCGGACCGAGGTTGTGATGCAGGATCGACAGCATGCAGG
GGGGACCAGGTCCATCCCCAGCTTACGCATTCTGCCTTTCCGACCGACTGAGCGCCCGCACACAC
GATTCGTGGGTTAGCTTAGGCATACGGAGTTCATCCCTAGTCTAAGCATACA
Found at i:34552732 original size:498 final size:498
Alignment explanation
Indices: 34551829--34552733 Score: 1118
Period size: 498 Copynumber: 1.8 Consensus size: 498
34551819 CCTCTCTGGT
* *
34551829 CGACTGAGCGCCCGCACCCTCGTTTAATGGGTTGACTTAGGTATACAGAGTTCATCCCCAATCTA
1 CGACTGAGCGCCCGCACCCTCATTTAATGGGTTGACTTAGGCATACAGAGTTCATCCCCAATCTA
* * * * * *
34551894 AGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGATCGAGGGTTACGATAGCAGGTTCGGT
66 AGCATACAGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTACGATAGCAGGATCGGC
* * * * * * * *
34551959 AGCACGTAAGGGGGATCGGGCCGATCCTCAGCTTATGTATTCTACCTCTTCGGCCGGTTAAGCAC
131 AGCACGCAAGGGGGACCAGGCCGATCCCCAGCTTACGCATTCTACCTCTTCGACCGGCTAAGCAC
* * * *
34552024 CCGCACACACATTTCGTGGGTTGGCGTAGGCTTAGGGAGTTCATTCAATGTCTAAGCCCCAGTTG
196 CCGCACACACATTTCGTGGGTTAGCGTAGGCATAGGGAGTTCATTCAATCTCTAAGCCCCAGTAG
* ** * * *
34552089 GACCGAGGGTTGTGGCAGTGCGATCGACAGCACATAGAGGGGGACTGGGTCAATCCCCGGCTTGC
261 GACCGAGGGTTATGGCAAAGCGACCGACAGCACATAGAGGGAGACTGGGTCAATCCCCAGCTTGC
** * * * * * * **
34552154 TTATTATGCCTCTCCGGTCGGGTCAGCGCCTGCTCGCTCGTTTCGTGGTTGACTGAGGCATATGG
326 GCATTATGCCTCTCCGGTCGGCTCAGCACCGGCACGCTCATTTCATGGTTGACTGAGGCATACAG
34552219 AGTTCATTCCCAGTCTATGATTGGATCGGACTGAGGTTGTGCTGCAGGATCGACAGCATGTAGGG
391 AGTTCATTCCCAGTCTATGATTGGATCGGACTGAGGTTGTGCTGCAGGATCGACAGCATGTAGGG
34552284 GGGATCGGGTCGATCCCCAGCTTACGCATTCTGCCTTTCCGAC
456 GGGATCGGGTCGATCCCCAGCTTACGCATTCTGCCTTTCCGAC
* ** * * *
34552327 CGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTA
1 CGACTGAGCGCCCGCACCCTCATTTAATGGGTTGACTTAGGCATACAGAGTTCATCCCCAATCTA
* **
34552392 AGCATACAGAGTTCATTCCCAGTCTAAGATCGAATCGGACCGAGGGTTGTGATAGCAGGATCGGC
66 AGCATACAGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTACGATAGCAGGATCGGC
* * * * * * * *
34552457 AGCATGCAGGGGGGACCAGGCC-ATTCCCCAGCTTGCGCATTTTGCCTCTTTGACCGGCTGAGCG
131 AGCACGCAAGGGGGACCAGGCCGA-TCCCCAGCTTACGCATTCTACCTCTTCGACCGGCTAAGCA
* * * * *
34552521 CCCGCGCACACGA-TTCGTGGGTTAGCTTAGGCATAGGGAGTTCATTCCATCTCTCAGCCCTAGT
195 CCCGCACACAC-ATTTCGTGGGTTAGCGTAGGCATAGGGAGTTCATTCAATCTCTAAGCCCCAGT
* * * *
34552585 AGGACCGAGGGTTATGGCAAAGGGACCGACAGCACGT-GAGGGAGA-TCGGG-CTGATCCTCAGC
259 AGGACCGAGGGTTATGGCAAAGCGACCGACAGCACATAGAGGGAGACT-GGGTC-AATCCCCAGC
* * * * * *
34552647 TTGCGCATTATTCCTCTTCGGTTGGCTTAGCACCGGCACGCTCATTTCATGGGTTGACTTATGCA
322 TTGCGCATTATGCCTCTCCGGTCGGCTCAGCACCGGCACGCTCATTTCAT-GGTTGACTGAGGCA
34552712 TACAGAGTTCATTCCCAGTCTA
386 TACAGAGTTCATTCCCAGTCTA
34552734 AGATCAGACC
Statistics
Matches: 334, Mismatches: 68, Indels: 10
0.81 0.17 0.02
Matches are distributed among these distances:
496 2 0.01
497 56 0.17
498 275 0.82
499 1 0.00
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (498 bp):
CGACTGAGCGCCCGCACCCTCATTTAATGGGTTGACTTAGGCATACAGAGTTCATCCCCAATCTA
AGCATACAGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTACGATAGCAGGATCGGC
AGCACGCAAGGGGGACCAGGCCGATCCCCAGCTTACGCATTCTACCTCTTCGACCGGCTAAGCAC
CCGCACACACATTTCGTGGGTTAGCGTAGGCATAGGGAGTTCATTCAATCTCTAAGCCCCAGTAG
GACCGAGGGTTATGGCAAAGCGACCGACAGCACATAGAGGGAGACTGGGTCAATCCCCAGCTTGC
GCATTATGCCTCTCCGGTCGGCTCAGCACCGGCACGCTCATTTCATGGTTGACTGAGGCATACAG
AGTTCATTCCCAGTCTATGATTGGATCGGACTGAGGTTGTGCTGCAGGATCGACAGCATGTAGGG
GGGATCGGGTCGATCCCCAGCTTACGCATTCTGCCTTTCCGAC
Found at i:34553074 original size:26 final size:26
Alignment explanation
Indices: 34553044--34553096 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34553034 GTTGACTTAG
*
34553044 GCATATGGAGTTCA-TCCCCAGTCTAA
1 GCATACGGAGTTCAGT-CCCAGTCTAA
34553070 GCATACGGAGTTCAGTCCCAGTCTAA
1 GCATACGGAGTTCAGTCCCAGTCTAA
34553096 G
1 G
34553097 ATCGAACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCAGTCCCAGTCTAA
Found at i:34553454 original size:159 final size:158
Alignment explanation
Indices: 34553070--34553465 Score: 418
Period size: 159 Copynumber: 2.5 Consensus size: 158
34553060 CCCAGTCTAA
* ** * * *
34553070 GCATACGGAGTTCAGTCCCAGTCTAAGATCGAACTGGACCAAGGGTTACGACAACAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGACAACAGGATCGACA
* * * * *
34553135 GCACGTAGGGGGGACTAGGCTGATCCCTGGCTTATGTATTCTGCCTCTCCGGCCGGTTGAGCACC
66 GCACGTAGGGGGGACCAGGCTGATCCCTGGCTTACGCATTCTGCCTCTCCGGCCGGCTCAGCACC
* *
34553200 CGTACACCCATTTCGTGGGTTGGCTTAG
131 CGCACACCCATTTCGTGGGTTGACTTAG
* ** * * ** * * *
34553228 GCATAAGGAGTTCATT-CCACGTCTAAGCCCCAACCAGACCGAGGGTTGTGGGAGCGGGACCTG-
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCGAACCAGACCGAGGGTTGCGACAACAGGATC-GA
* * * * * *
34553291 CAGCACGTAGAGGGGGACCGGGTTGATCCCTGGCTTGCGCATTGTGCCTCTTCGGCCGGCTCAGT
64 CAGCACGTAG-GGGGGACCAGGCTGATCCCTGGCTTACGCATTCTGCCTCTCCGGCCGGCTCAGC
* * * *
34553356 GCCCGCACGCTCATTTCGTGGGTTGACTTAT
128 ACCCGCACACCCATTTCGTGGGTTGACTTAG
* * *
34553387 GCATACGTAGTTCATTCCCAGTCTAAGATCGGACCAGACCGATGGTTGCGACAACAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGACAACAGGATCGACA
*
34553452 GCATGTAGGGGGGA
66 GCACGTAGGGGGGA
34553466 TCGACAGCAC
Statistics
Matches: 186, Mismatches: 47, Indels: 10
0.77 0.19 0.04
Matches are distributed among these distances:
157 3 0.02
158 58 0.31
159 122 0.66
160 3 0.02
ACGTcount: A:0.21, C:0.26, G:0.31, T:0.22
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGACAACAGGATCGACA
GCACGTAGGGGGGACCAGGCTGATCCCTGGCTTACGCATTCTGCCTCTCCGGCCGGCTCAGCACC
CGCACACCCATTTCGTGGGTTGACTTAG
Found at i:34553468 original size:20 final size:21
Alignment explanation
Indices: 34553443--34553489 Score: 69
Period size: 20 Copynumber: 2.3 Consensus size: 21
34553433 TGCGACAACA
* *
34553443 GGATCGACAGCATGTAG-GGG
1 GGATCGACAGCACGCAGAGGG
34553463 GGATCGACAGCACGCAGAGGG
1 GGATCGACAGCACGCAGAGGG
34553484 GGATCG
1 GGATCG
34553490 GGTCGATCCC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
20 15 0.62
21 9 0.38
ACGTcount: A:0.26, C:0.19, G:0.45, T:0.11
Consensus pattern (21 bp):
GGATCGACAGCACGCAGAGGG
Found at i:34553591 original size:179 final size:179
Alignment explanation
Indices: 34553291--34553630 Score: 518
Period size: 179 Copynumber: 1.9 Consensus size: 179
34553281 GCGGGACCTG
* * ** * * * *
34553291 CAGCACGTAGAGGGGGACCGGGTTGATCCCTGGCTTGCGCATTGTGCCTCTTCGGCCGGCTCAGT
1 CAGCACGCAGAGGGGGACCGGGTCGATCCCCAGCTTGCACATTATGCCTCTCCGGCCGGCTCAAT
* *
34553356 GCCCGCACGCTCATTTCGTGGGTTGACTTATGCATACGTAGTTCATTCCCAGTCTAAGATCGGAC
66 GCCCGCACGCTCATTTCGTGGGTTGACTTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
* *
34553421 CAGACCGATGGTTGCGACAACAGGATCGACAGCATGTAGGGGGGATCGA
131 CAGACCGAGGGTTACGACAACAGGATCGACAGCATGTAGGGGGGATCGA
* *
34553470 CAGCACGCAGAGGGGGATCGGGTCGATCCCCAGCTTGCACATTATGCCTCTCCGGCCTGCTCAAT
1 CAGCACGCAGAGGGGGACCGGGTCGATCCCCAGCTTGCACATTATGCCTCTCCGGCCGGCTCAAT
*
34553535 GCCCGTACGCTCATTTCGTGGGTTGACTTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
66 GCCCGCACGCTCATTTCGTGGGTTGACTTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
** *
34553600 CAGACCGAGGGTTACGGTAGCAGGATCGACA
131 CAGACCGAGGGTTACGACAACAGGATCGACA
34553631 ACACGCAGGG
Statistics
Matches: 143, Mismatches: 18, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
179 143 1.00
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.22
Consensus pattern (179 bp):
CAGCACGCAGAGGGGGACCGGGTCGATCCCCAGCTTGCACATTATGCCTCTCCGGCCGGCTCAAT
GCCCGCACGCTCATTTCGTGGGTTGACTTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
CAGACCGAGGGTTACGACAACAGGATCGACAGCATGTAGGGGGGATCGA
Found at i:34553792 original size:184 final size:188
Alignment explanation
Indices: 34553576--34553948 Score: 436
Period size: 196 Copynumber: 2.0 Consensus size: 188
34553566 GCATACGGAG
* *
34553576 TTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTT-A-C-G-GTAGCAGGATCGACAACACGC
1 TTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTCAGCAGCGCAGCAGGATCGACAACACAC
*
34553637 AGGGGGGGACTGAGTCGATCCCCAGCTTGT-GCATTCTGCCTCCCCGA-CTGACTGAGCACCCAC
66 AGGGGGCGACTGAGTCGATCCCCAGCTT-TCGCATTCTGCCTCCCCGATC-GACTGAGCACCCAC
* *
34553700 ACGCTCGTTTTATGGGTTGGCTTAGGCATACAG-AGTTCATTCCATGTCTAAGCTTATGGA
129 ACGCTCATTTCATGGGTTGGCTTAGGCAT-CAGAAGTTCATTCCATGTCTAAGCTTATGGA
* *
34553760 TTCATTCCCAGTCTAAGATTGGACTAGACCGAGGGTTGCAGCAGCAAGGCCAGCAGCAGGATCGA
1 TTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTT----CAGC-A-G-C-GCAGCAGGATCGA
* * * * * * *
34553825 CAGCACACAGGGGGCGACTGGGTTGATCCTCGGCTTTCGCATTCTGCCTCTCCGATCGGCTGAGC
58 CAACACACAGGGGGCGACTGAGTCGATCCCCAGCTTTCGCATTCTGCCTCCCCGATCGACTGAGC
* * * *
34553890 GCCCGCATGCTCATTTCATGGGTTGGCTTAGGCATCCGAAGTTCATTCCATGTCTAAGC
123 ACCCACACGCTCATTTCATGGGTTGGCTTAGGCATCAGAAGTTCATTCCATGTCTAAGC
34553949 CCCAGTCGGA
Statistics
Matches: 156, Mismatches: 18, Indels: 18
0.81 0.09 0.09
Matches are distributed among these distances:
184 35 0.22
189 1 0.01
190 1 0.01
193 1 0.01
195 3 0.02
196 114 0.73
197 1 0.01
ACGTcount: A:0.21, C:0.28, G:0.27, T:0.24
Consensus pattern (188 bp):
TTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTCAGCAGCGCAGCAGGATCGACAACACAC
AGGGGGCGACTGAGTCGATCCCCAGCTTTCGCATTCTGCCTCCCCGATCGACTGAGCACCCACAC
GCTCATTTCATGGGTTGGCTTAGGCATCAGAAGTTCATTCCATGTCTAAGCTTATGGA
Found at i:34554128 original size:26 final size:26
Alignment explanation
Indices: 34554089--34554144 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
34554079 TGGGTTGACT
*
34554089 TAAGCATACGGAGTTCATCCCCAGTC
1 TAAGCATACAGAGTTCATCCCCAGTC
* *
34554115 TAAGCATATAGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTCATCCCCAGTC
34554141 TAAG
1 TAAG
34554145 ATCGAACTAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATCCCCAGTC
Found at i:34554610 original size:26 final size:26
Alignment explanation
Indices: 34554568--34554656 Score: 135
Period size: 26 Copynumber: 3.4 Consensus size: 26
34554558 TGAATGCCCA
*
34554568 CATGTCTTAGGCATACGGAGTTCATTC
1 CATGTC-TAAGCATACGGAGTTCATTC
34554595 CATGTCTAAGCATACGGAGTTCATTC
1 CATGTCTAAGCATACGGAGTTCATTC
*
34554621 CATGTCTAAGCATACGGGGTTCATTCC
1 CATGTCTAAGCATACGGAGTTCATT-C
34554648 CA-GTCTAAG
1 CATGTCTAAG
34554657 TGTTTGAGCC
Statistics
Matches: 59, Mismatches: 2, Indels: 3
0.92 0.03 0.05
Matches are distributed among these distances:
26 50 0.85
27 9 0.15
ACGTcount: A:0.25, C:0.24, G:0.21, T:0.30
Consensus pattern (26 bp):
CATGTCTAAGCATACGGAGTTCATTC
Found at i:34555669 original size:159 final size:158
Alignment explanation
Indices: 34555392--34555728 Score: 435
Period size: 159 Copynumber: 2.1 Consensus size: 158
34555382 TGGACCAGAT
* * * *
34555392 CGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGGGGGGACCAGGTCGATCCCCGGCTTGCGCAT
1 CGAGGGTTGTGGCAGCAGGATCGACAGCACACAGGGGGGACCAGGCCAATCCCCGGCTTGCGCAT
* * * * **
34555457 TCTACCTCTCCAACCGACTGAGCGCCCGCACACCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGT
66 TATACCTCTCCAACCGACTCAGCGCCCGCACACCCGTTCCATGGGTTGGCTTAGGCATACAGAGT
*
34555522 TCATTCCATGTCTAAG-CCCTAGCCGGAC
131 TCATTCCATATCTAAGCCCCT-GCCGGAC
* * * *
34555550 CGAGGGTTGTGGTAGC-GAGATCGACAGCACACAGAGGGGGATCGGGCCAATGCCCGGCTTGCGC
1 CGAGGGTTGTGGCAGCAG-GATCGACAGCACACAG-GGGGGACCAGGCCAATCCCCGGCTTGCGC
* * * * * *
34555614 ATTATGCCTTTCCGACCGGCTCAGCGCCCGCACGCTCGTTCCATGGGTTGGCTTAGGCATACAGA
64 ATTATACCTCTCCAACCGACTCAGCGCCCGCACACCCGTTCCATGGGTTGGCTTAGGCATACAGA
*
34555679 GTTCATTCCATATGTAAGCCCCTGCCGGAC
129 GTTCATTCCATATCTAAGCCCCTGCCGGAC
34555709 CGAGGGTTGTGGCAGCAGGA
1 CGAGGGTTGTGGCAGCAGGA
34555729 CCGGCAGCGG
Statistics
Matches: 152, Mismatches: 23, Indels: 7
0.84 0.13 0.04
Matches are distributed among these distances:
157 1 0.01
158 29 0.19
159 117 0.77
160 5 0.03
ACGTcount: A:0.18, C:0.29, G:0.32, T:0.20
Consensus pattern (158 bp):
CGAGGGTTGTGGCAGCAGGATCGACAGCACACAGGGGGGACCAGGCCAATCCCCGGCTTGCGCAT
TATACCTCTCCAACCGACTCAGCGCCCGCACACCCGTTCCATGGGTTGGCTTAGGCATACAGAGT
TCATTCCATATCTAAGCCCCTGCCGGAC
Found at i:34555883 original size:26 final size:26
Alignment explanation
Indices: 34555853--34555905 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34555843 GTTGACCTAG
34555853 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
34555879 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
34555905 G
1 G
34555906 ATCAAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:34556399 original size:158 final size:158
Alignment explanation
Indices: 34555931--34556435 Score: 459
Period size: 158 Copynumber: 3.2 Consensus size: 158
34555921 GGGTTGCGAC
* * * * * * **
34555931 AGCAGGATTGGCAGTACGCAG-GGGGGAT-TGGGCTGATCCTCGGCTTACGCATTCTGCCTCTCC
1 AGCAGGATCGACAGCACGCAGAGGGGGATCAGGTC-GATCCTCAGCTTGTGCATTCTGCCTCTCC
* * * *
34555994 GGTCGACTGAGCGCCCGTACGC-CTGTTTCATGACTTGGCTTAGGCATAGGGAGTTCATTCCATG
65 -GCCGGCTGAGCGCCCGTACGCTC-GTTTCATGAGTTGGCTTAGGCATACGGAGTTCATTCCATG
* *
34556058 TCGAAGCCTTAGTC-AGACCGAAGGTTGTGGT
128 TCTAAGCCTTAGTCGA-ACCGAGGGTTGTGGT
* * * * * * * * *
34556089 AACGGGACCGACAGCACGCAGAGGGGGACCGGGAT-GATCCCCAGATTGTGCATTATGCCTCTTC
1 AGCAGGATCGACAGCACGCAGAGGGGGATCAGG-TCGATCCTCAGCTTGTGCATTCTGCCTCTCC
* * * * * * *
34556153 GACCGGCTCAGCGCCCGTACACTCGTTTCATGCGTTGACTTATGCATACGAAGTTTATTCCCA-G
65 G-CCGGCTGAGCGCCCGTACGCTCGTTTCATGAGTTGGCTTAGGCATACGGAGTTCATT-CCATG
* * * ** *
34556217 TGTAAG-ATTAGATCGAACCAAGGGTCATAGT
128 TCTAAGCCTTAG-TCGAACCGAGGGTTGTGGT
*
34556248 AGCAGGATCGACAGCATGCAG-GGGGGATCAGGTCGATCCTCAGCTTGTGCATTCTGCCTCTCCA
1 AGCAGGATCGACAGCACGCAGAGGGGGATCAGGTCGATCCTCAGCTTGTGCATTCTGCCTCTCC-
* * * * *
34556312 GCCGGTTGAGTGCCCGCATGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
65 GCCGGCTGAGCGCCCGTACGCTCGTTTCATGAGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
* * * *
34556377 TAAGCCCTAGCCGAACTGAGGGTTGTGGC
130 TAAGCCTTAGTCGAACCGAGGGTTGTGGT
34556406 AGCAGGATCGACAGCACGCAGAGGGGGATC
1 AGCAGGATCGACAGCACGCAGAGGGGGATC
34556436 GACAGCACGT
Statistics
Matches: 267, Mismatches: 67, Indels: 25
0.74 0.19 0.07
Matches are distributed among these distances:
157 4 0.01
158 138 0.52
159 118 0.44
160 7 0.03
ACGTcount: A:0.21, C:0.25, G:0.30, T:0.24
Consensus pattern (158 bp):
AGCAGGATCGACAGCACGCAGAGGGGGATCAGGTCGATCCTCAGCTTGTGCATTCTGCCTCTCCG
CCGGCTGAGCGCCCGTACGCTCGTTTCATGAGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
AAGCCTTAGTCGAACCGAGGGTTGTGGT
Found at i:34556454 original size:20 final size:21
Alignment explanation
Indices: 34556410--34556452 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
34556400 TGTGGCAGCA
34556410 GGATCGACAGCACGCAGAGGG
1 GGATCGACAGCACGCAGAGGG
*
34556431 GGATCGACAGCACGTAGAGGG
1 GGATCGACAGCACGCAGAGGG
34556452 G
1 G
34556453 ATAAAACGGG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.28, C:0.21, G:0.44, T:0.07
Consensus pattern (21 bp):
GGATCGACAGCACGCAGAGGG
Found at i:34557081 original size:171 final size:169
Alignment explanation
Indices: 34556739--34557081 Score: 429
Period size: 171 Copynumber: 2.0 Consensus size: 169
34556729 TTGGGCAGTA
* *
34556739 GGATCGATAGCACACAGGGGGGATCGGGCCGATCCCTGACTTAAACATTTGCCTCTCTGACCGAC
1 GGATCGATAGCACACAGGGGGGACCGGGCCGATCCCTGACTTAAACATTTGCCTCTCCGACCGAC
*
34556804 TGAGCACCCGCACGCTCGTTTCATGGGATGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCC
66 TGAGCACCAGCACGCTCGTTTCATGGGATGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCC
* * *
34556869 CCAATCGAACCGAGGGTTATGGCAGTAGGACCCGTAGCG
131 CCAATAGAACCGAGGGTTATGGCAGCAGGACCCGCAGCG
** * * *** *
34556908 GGATCGATAGCACGTAGAGGGGGACCGGGCTGATCCCTGGCTTGCTCATTATGCCTCTCCGGCCG
1 GGATCGATAGCACACAG-GGGGGACCGGGCCGATCCCTGACTTAAACATT-TGCCTCTCCGACCG
* * * ** *
34556973 GCTGAGTACTAGCACGCTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
64 ACTGAGCACCAGCACGCTCGTTTCATGGGATGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
* * *
34557038 CCCTAGCTAG-ACCGAGGGTTGTGGCAGCAGGA-CCGACAGCG
129 CCCCA-ATAGAACCGAGGGTTATGGCAGCAGGACCCG-CAGCG
34557079 GGA
1 GGA
34557082 CTAGTCTATG
Statistics
Matches: 147, Mismatches: 23, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
169 15 0.10
170 29 0.20
171 101 0.69
172 2 0.01
ACGTcount: A:0.20, C:0.27, G:0.31, T:0.22
Consensus pattern (169 bp):
GGATCGATAGCACACAGGGGGGACCGGGCCGATCCCTGACTTAAACATTTGCCTCTCCGACCGAC
TGAGCACCAGCACGCTCGTTTCATGGGATGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCC
CCAATAGAACCGAGGGTTATGGCAGCAGGACCCGCAGCG
Found at i:34557392 original size:159 final size:159
Alignment explanation
Indices: 34557151--34557594 Score: 471
Period size: 159 Copynumber: 2.8 Consensus size: 159
34557141 ATAGTAAGAT
* * * * *
34557151 TGACAGCACGTAGGGGGGACCTGGCCGATCCCCAGCATATGCATTTTGCCTCTCCAGTTGGCTGA
1 TGACAGCACGCAGGGGGGACCAGGCCGATCCCCAACTTATGCATTCTGCCTCTCCAGTTGGCTGA
* * ** * * *
34557216 GCACCCGCACACCCGTTTTGTGGGTTGGCTTAGACATAGGGAGTTCATTCCATGTCTAAGCCCTA
66 GCACCCACACACTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACTA
* * *
34557281 GA-CGGACCGAGGGTTGTGGCAACGGGAC
131 GACCGAACCGAGGGTTGTGACAACAGGAC
* * * *
34557309 TGACAGCATGCAGAGGGGGACCGGGCCGATCCTCAACTTATGCATTCTGCCTCTCCAGTTGGCTC
1 TGACAGCACGCAG-GGGGGACCAGGCCGATCCCCAACTTATGCATTCTGCCTCTCCAGTTGGCTG
** * * * *
34557374 AGTGCCCACACGCTCGTTTCATGGGTTGACATAGGCATACGGAGTTCATTCCCA-GTCTAAG-AT
65 AGCACCCACACACTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCAC
* * * *
34557437 TGGACCGAATCGAGGGTTGTGACAGCAGGAT
129 TAGACCGAACCGAGGGTTGTGACAACAGGAC
* * ** * ** * * * * *
34557468 TGATAGCACGCAGGGGGGACTAGGTTGATCCCCGACTTGCGTATTCTACCTCTCCGGTCGACTGA
1 TGACAGCACGCAGGGGGGACCAGGCCGATCCCCAACTTATGCATTCTGCCTCTCCAGTTGGCTGA
*
34557533 GCACCCACACCCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
66 GCACCCACACACTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
34557595 TACGGAGTTC
Statistics
Matches: 232, Mismatches: 49, Indels: 9
0.80 0.17 0.03
Matches are distributed among these distances:
157 3 0.01
158 103 0.44
159 123 0.53
160 3 0.01
ACGTcount: A:0.20, C:0.27, G:0.28, T:0.24
Consensus pattern (159 bp):
TGACAGCACGCAGGGGGGACCAGGCCGATCCCCAACTTATGCATTCTGCCTCTCCAGTTGGCTGA
GCACCCACACACTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACTA
GACCGAACCGAGGGTTGTGACAACAGGAC
Found at i:34557596 original size:26 final size:26
Alignment explanation
Indices: 34557566--34557619 Score: 92
Period size: 26 Copynumber: 2.1 Consensus size: 26
34557556 GTTGGCTTAG
34557566 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
34557592 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
34557618 GC
1 GC
34557620 TCAGACCGAA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.89
27 3 0.11
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:34558404 original size:26 final size:26
Alignment explanation
Indices: 34558374--34558426 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
34558364 GTTGACTTAG
*
34558374 GCATATGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
34558400 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
34558426 G
1 G
34558427 ATCAGATCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:34558734 original size:26 final size:26
Alignment explanation
Indices: 34558704--34558756 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34558694 GTTGACTTAG
34558704 GCATATGGAGTTCATCCCCAATCTAA
1 GCATATGGAGTTCATCCCCAATCTAA
* *
34558730 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAATCTAA
34558756 G
1 G
34558757 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATATGGAGTTCATCCCCAATCTAA
Found at i:34559257 original size:26 final size:26
Alignment explanation
Indices: 34559205--34559257 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34559195 GTTGGCTTAG
*
34559205 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTATAA
34559231 GCATACGGAGTTCATTCCCA-GTATAA
1 GCATACGGAGTTCATT-CCATGTATAA
34559257 G
1 G
34559258 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTATAA
Found at i:34559956 original size:26 final size:26
Alignment explanation
Indices: 34559927--34559979 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
34559917 GGGTTGACTG
34559927 AGGCATACGGAGTTCATCCCCAGTCT
1 AGGCATACGGAGTTCATCCCCAGTCT
*
34559953 AGGCATACGGAGTTCATTCCCAGTCT
1 AGGCATACGGAGTTCATCCCCAGTCT
34559979 A
1 A
34559980 AGATCAGATT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (26 bp):
AGGCATACGGAGTTCATCCCCAGTCT
Found at i:34560748 original size:26 final size:26
Alignment explanation
Indices: 34560710--34560762 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34560700 GGCTCAAAAT
*
34560710 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
34560736 CTTAGACAT-GGAATGAACTCCGCATG
1 CTTAGAC-TGGGAATGAACTCCGCATG
34560762 C
1 C
34560763 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:34561130 original size:159 final size:159
Alignment explanation
Indices: 34560735--34561136 Score: 359
Period size: 159 Copynumber: 2.5 Consensus size: 159
34560725 AACTCCGTAT
* * *
34560735 GCTTAGACATGGAATGAACTCCGC-ATGCCTAAGCCAACCCATAAAATGAGCGTGCGGGCACTCA
1 GCTTAGACATGGAATGAACTCC-CTATGCCTAAGCCAACCCATGAAACGAGCGAGCGGGCACTCA
* * * *
34560799 GTC-GACTTGAGAGGTAAAATGTGCAAGCCGCGGATCGACCCTATCCCCCCCTACATGCTATCGA
65 GTCGGAC-AGAGAGGCAAAATGCGCAAGCCGCGGATCGACCCGATCCCCCCCTACATGCTATCGA
* * *
34560863 TCCTGCTGCAGTAACCCTTGATCTGATCCGA
129 TCCTGCTCCAGTAACCCTCGATCAGATCCGA
* ** * * * *
34560894 TCTTAGAC-TGGGAATGAACTCTGTATGCATAGGTCAACCCATGAAACGAGCGTA-CGGGCACTG
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCG-AGCGGGCACTC
* * * * * * * * * *
34560957 AG-CGGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATTGGCCCGGTCCCCCTCTGCATGCTGTCG
64 AGTCGGACAG-AGAGGCAAAATGCGCAAGCCGCGGATCGACCCGATCCCCCCCTACATGCTATCG
* * * * * *
34561021 GTCTTGCTACCA-TAACCCTCGGTCCAGCT-GGG
128 ATCCTGCT-CCAGTAACCCTCGAT-CAGATCCGA
* *
34561053 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGAGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGAGCGGGCACTCAG
* *
34561118 TCGGTCAGAGAGGTAAAAT
66 TCGGACAGAGAGGCAAAAT
34561137 ACATAAATCA
Statistics
Matches: 188, Mismatches: 45, Indels: 20
0.74 0.18 0.08
Matches are distributed among these distances:
158 4 0.02
159 173 0.92
160 11 0.06
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.19
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGAGCGGGCACTCAG
TCGGACAGAGAGGCAAAATGCGCAAGCCGCGGATCGACCCGATCCCCCCCTACATGCTATCGATC
CTGCTCCAGTAACCCTCGATCAGATCCGA
Found at i:34561609 original size:26 final size:25
Alignment explanation
Indices: 34561580--34561657 Score: 120
Period size: 26 Copynumber: 3.0 Consensus size: 25
34561570 CCGGTCTGAT
*
34561580 CTTAGAATGGGAATGAACTCCGTATG
1 CTTAGACTGGG-ATGAACTCCGTATG
34561606 CTTAGACTGGCGATGAACTCCGTATG
1 CTTAGACTGG-GATGAACTCCGTATG
34561632 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACT-GGGATGAACTCCGTATG
34561658 TCTAAGTCAA
Statistics
Matches: 49, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
26 46 0.94
27 3 0.06
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.27
Consensus pattern (25 bp):
CTTAGACTGGGATGAACTCCGTATG
Found at i:34562735 original size:159 final size:157
Alignment explanation
Indices: 34562352--34562852 Score: 420
Period size: 157 Copynumber: 3.2 Consensus size: 157
34562342 AACTCCGCAT
* ** * * * ** * **
34562352 GCTTAGACATGAAATGAACTCTGTATGCCTAAGCCAATCCACGAAACGAATGTGCGGGTGCTCAG
1 GCTTAGACA-GGAATGAACTCCCTATGCATAAGCCAACCCACAAAACGAGCGTACGGGCACTCAG
* * * * **
34562417 CCAATCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCGGGTACCCCCTGCGTGCTGTCGATCC
65 CCGACCGAAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTACCCCCTGCGTGCTACCGATCC
** **
34562482 TGCTACTGCAACCCTCAGTTTGGTCTGA
130 TGCTACCACAACCCTCAGTTCAGTCTGA
* * * * * * * *
34562510 TCTTAGACTGGAATGAACTTCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCACTGAGC
1 GCTTAGACAGGAATGAACTCCCTATGCATAAGCCAACCCACAAAACGAGCGTACGGGCACTCAGC
* * *
34562575 CGACCGAAGAGGCATAATGCGCAAGCCG-GCGTTCGACCCGGTCCCCCTCTGCGTGCTACCGATC
66 CGACCGAAGAGGCAGAATGCGCAAGCCGAG-GATCGACCCGGTACCCC-CTGCGTGCTACCGATC
* *
34562639 CTGCTACCACAACCCTCGGTTCAG-CTGGG
129 CTGCTACCACAACCCTCAGTTCAGTCT-GA
* *
34562668 GCTTAGACAAGGAATGAACTCCCTATGCCA-AAGCCAACCCATAAAACGGGCGTACGGGCACTCA
1 GCTTAGAC-AGGAATGAACTCCCTATG-CATAAGCCAACCCACAAAACGAGCGTACGGGCACTCA
* * * * * **
34562732 GCCGACCGGAGAGGCAGAATACGCAAGTCGGGGATC-AGCCCGAT-CCCCCTGCGTGCTGTCGAT
64 GCCGACCGAAGAGGCAGAATGCGCAAGCCGAGGATCGA-CCCGGTACCCCCTGCGTGCTACCGAT
* ** * * *
34562795 CCTACTACTGCAACCCTC-GATCTGATCCGA
128 CCTGCTACCACAACCCTCAGTTCAG-TCTGA
* *
34562825 TCTTAGACTAGGAATGAACTCCGTATGC
1 GCTTAGAC-AGGAATGAACTCCCTATGC
34562853 TTAGACTGGG
Statistics
Matches: 278, Mismatches: 56, Indels: 20
0.79 0.16 0.06
Matches are distributed among these distances:
156 6 0.02
157 138 0.50
158 54 0.19
159 77 0.28
160 3 0.01
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (157 bp):
GCTTAGACAGGAATGAACTCCCTATGCATAAGCCAACCCACAAAACGAGCGTACGGGCACTCAGC
CGACCGAAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTACCCCCTGCGTGCTACCGATCCT
GCTACCACAACCCTCAGTTCAGTCTGA
Found at i:34562855 original size:26 final size:26
Alignment explanation
Indices: 34562826--34562878 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34562816 CTGATCCGAT
34562826 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
34562852 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
34562878 C
1 C
34562879 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:34564213 original size:159 final size:158
Alignment explanation
Indices: 34563858--34564358 Score: 449
Period size: 159 Copynumber: 3.2 Consensus size: 158
34563848 GGCTCAAAAT
** *
34563858 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCACTCAGC
* * * * *** *
34563923 CGATCGAAGAGGCAGAATGCGCAAGCCGTGGATCTATCCGATCCCCCCTGCGTGCTGTTGATCCT
66 CGATCGAAGAGGCAGAACGCGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTGCCAATCCC
* * *
34563988 ACTACTGCAACCCTCGGTTCGATTCGAT
131 ACTACAGCAACCCTCGGTTCGACTCGAG
* * * * *
34564016 CTTAGACTGGGAATGAACTTCGTATGCATAAGTCAACCCATGAAACGAGCATGCGGGCGCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCACTCAGC
* * * * *
34564081 C-AGTCGAAGAGGCATAACGCGTAAGCCGGGGTTCGGCCCGGTCCCCCTCTGCGTGCTGCCAATC
66 CGA-TCGAAGAGGCAGAACGCGCAAGCCGGGGATCGACCCGATCCCCC-CTGCGTGCTGCCAATC
* * * *
34564145 CCGCTGCCAG-AACCCTCGG-TCTGGCTGGAG
129 CCACT-ACAGCAACCCTCGGTTC-GACTCGAG
** * ** *
34564175 CTTAGACAT-GGAATGAACTCCCCATGCCTAAGCCAACCCATGAAACGGGCATGCGGGTGCTCAA
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCACTCAG
* * * * * * * * *
34564239 CCGATCGGAGAGGCAGAATGTGTATGCGGGGGATCGACCCGCT-CCCCCTGCGTGCTACCGATCC
65 CCGATCGAAGAGGCAGAACGCGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTGCCAATCC
* * * *
34564303 TATTACCGCAACCCTCGG-TCTGA-TCCGAT
130 CACTACAGCAACCCTCGGTTC-GACT-CGAG
* *
34564332 CTTAGATTGGGAATGAACTCCATATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
34564359 TTAGACTGGG
Statistics
Matches: 275, Mismatches: 59, Indels: 19
0.78 0.17 0.05
Matches are distributed among these distances:
156 4 0.01
157 54 0.20
158 99 0.36
159 114 0.41
160 4 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCACTCAGC
CGATCGAAGAGGCAGAACGCGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTGCCAATCCC
ACTACAGCAACCCTCGGTTCGACTCGAG
Found at i:34564368 original size:26 final size:26
Alignment explanation
Indices: 34564332--34564384 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34564322 CTGATCCGAT
*
34564332 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
34564358 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
34564384 C
1 C
34564385 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:34564719 original size:355 final size:342
Alignment explanation
Indices: 34564016--34564791 Score: 897
Period size: 355 Copynumber: 2.2 Consensus size: 342
34564006 TCGATTCGAT
* * * *
34564016 CTTAGACTGGGAATGAACTTCGTATGCATAAGTCAACCCATGAAACGAGCATGCGGGCGCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * ** * * *
34564081 C-AGTCGAAGAGGCATAACGCGTAAGCCGGGGTTCGGCCCGGTCCCCCTCTGCGTGCTGCCAATC
66 CGA-CCGGAGAGGCATAACGCATAAGCCAAGGATCAGCCCGATCCCCCTCTGCGTGCTGCCAATC
* * ***
34564145 CCGCTGCCAGAACCCTCGGTCTGGCTGGAGCTTAGACATGGAATGAACTCCCCATGCCTAAGCCA
130 CCGCTGCCACAACCCTCAGTCCAACTGGAGCTTAGACATGGAATGAACTCCCCATGCCTAAGCCA
* * * * * * *
34564210 ACCCATGAAACGGGCATGCGGGTGCTCAACCGATCGGAGAGGCAGAATGTGTATGCGGGGGATCG
195 ACCCACGAAACGAGCATGCGGGTGCTCAACCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCG
* * * ** * * *
34564275 ACCCGCTCCCCCTGCGTGCTACCGATCCTATTACCGCAACCCTCGGTCTGATCCGATCTTAGATT
260 ACCCGATCCCCCTGCGTGCTACCGATCCTACTACCACAACCCTCGACCCGATCAGATCTTAGACT
34564340 GGGAATGAACTCCATATG
325 GGGAATGAACTCCATATG
* * *
34564358 CTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCATGAAACTAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
*
34564423 CGACCGGAGAGGCATAATGCATAAGCCAAGGATCAGCCCGATCCCCCTCTGCGTGCTGCCAATCC
66 CGACCGGAGAGGCATAACGCATAAGCCAAGGATCAGCCCGATCCCCCTCTGCGTGCTGCCAAT-C
* * **
34564488 TGTTGCCGGTCTTGCTATCACAACCCTCAGTCCAACTGGGGCTTAGGCATGGAATGAACTCCGTA
130 -----CC-G-C-TGC---CACAACCCTCAGTCCAACTGGAGCTTAGACATGGAATGAACTCCCCA
** * * *
34564553 TGCCTAAGCCAACCCACGAAACGAGTGTGCGGGTGCTGAATCGGCCGGAGAGGCAGAATGCGCAA
184 TGCCTAAGCCAACCCACGAAACGAGCATGCGGGTGCTCAACCGACCGGAGAGGCAGAATGCGCAA
* * * * * * *
34564618 GCCGGGGATTGGCTCGATCCCCCCTGCGTGGTGCCGATCCTACTGCCACAACCCTCGACCCGGTC
249 GCCGGGGATCGACCCGAT-CCCCCTGCGTGCTACCGATCCTACTACCACAACCCTCGACCCGATC
34564683 AGATCTTAGACTGGGAATGAACTCCATATG
313 AGATCTTAGACTGGGAATGAACTCCATATG
* * * *
34564713 CTTAGACTGGGAATGAACTCTGTATGCCCAAGTCAACCCATGAAACGAGCGTGCGGACGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* *
34564778 TGACCAGAGAGGCA
66 CGACCGGAGAGGCA
34564792 AGATGCGCAA
Statistics
Matches: 359, Mismatches: 61, Indels: 15
0.83 0.14 0.03
Matches are distributed among these distances:
342 110 0.31
343 2 0.01
348 2 0.01
349 1 0.00
350 1 0.00
351 3 0.01
354 105 0.29
355 135 0.38
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (342 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
CGACCGGAGAGGCATAACGCATAAGCCAAGGATCAGCCCGATCCCCCTCTGCGTGCTGCCAATCC
CGCTGCCACAACCCTCAGTCCAACTGGAGCTTAGACATGGAATGAACTCCCCATGCCTAAGCCAA
CCCACGAAACGAGCATGCGGGTGCTCAACCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGA
CCCGATCCCCCTGCGTGCTACCGATCCTACTACCACAACCCTCGACCCGATCAGATCTTAGACTG
GGAATGAACTCCATATG
Found at i:34565440 original size:26 final size:26
Alignment explanation
Indices: 34565402--34565454 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
34565392 TGCTCAAAAT
34565402 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
34565428 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
34565454 C
1 C
34565455 CTAAGACAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:34565887 original size:157 final size:158
Alignment explanation
Indices: 34565595--34565936 Score: 377
Period size: 157 Copynumber: 2.2 Consensus size: 158
34565585 CTGGTCTGAT
* * * *
34565595 CTTAGACTAGGAATGAACTCTGTATGCATAAGTCAACCCACGAAATGAGCGTGCAGGCACTGAGC
1 CTTAGACTAGGAATGAACTCTCTATGCATAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAGC
* ** * * * * * *
34565660 TGATTGAAGAGGCATAATGCACAAGCCGGGGATCTCCCGGTCCCCCTCTGCGTGCTTTCAATCCC
66 CGACCGAAGAGGCAGAATACACAAGCCGAGGATCACCCAGTCCCCCTCTGCGTGCTATCAATCCC
* *
34565725 GCTACCATAACCCTCG-TCCGGCTGGGG
131 ACTACCACAACCCTCGATCCGGCTGGGG
* * *
34565752 CTTAGAC-ATGGAATGAACTCTCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 CTTAGACTA-GGAATGAACTCTCTATGCATAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAG
* **
34565816 CCGACCGGAGAGGCAGAATACGTAAGCCGAGGATCGACCCAGTCCCCC-CTGCGTGCTATCAATC
65 CCGACCGAAGAGGCAGAATACACAAGCCGAGGATC-ACCCAGTCCCCCTCTGCGTGCTATCAATC
* * * * **
34565880 CTACTACCGCAACCCTCGATCC-GATCCGAT
129 CCACTACCACAACCCTCGATCCGGCT-GGGG
*
34565910 CTTAGACTAGGAATGAACTCTGTATGC
1 CTTAGACTAGGAATGAACTCTCTATGC
34565937 TTAGACTAGG
Statistics
Matches: 152, Mismatches: 28, Indels: 9
0.80 0.15 0.05
Matches are distributed among these distances:
156 1 0.01
157 112 0.74
158 38 0.25
159 1 0.01
ACGTcount: A:0.25, C:0.31, G:0.24, T:0.20
Consensus pattern (158 bp):
CTTAGACTAGGAATGAACTCTCTATGCATAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAGC
CGACCGAAGAGGCAGAATACACAAGCCGAGGATCACCCAGTCCCCCTCTGCGTGCTATCAATCCC
ACTACCACAACCCTCGATCCGGCTGGGG
Found at i:34565946 original size:26 final size:26
Alignment explanation
Indices: 34565910--34565962 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34565900 CCGATCCGAT
*
34565910 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
34565936 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
34565962 C
1 C
34565963 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:34566668 original size:26 final size:26
Alignment explanation
Indices: 34566632--34566691 Score: 70
Period size: 26 Copynumber: 2.4 Consensus size: 26
34566622 CCTCGGTCTG
*
34566632 ATCCG-AT-CTTAGATTGGGAATGAA
1 ATCCGTATGCTTAGACTGGGAATGAA
* *
34566656 ATCTGTATGCTTAGACTGGGGATGAA
1 ATCCGTATGCTTAGACTGGGAATGAA
*
34566682 CTCCGTATGC
1 ATCCGTATGC
34566692 CTAAGTTAAC
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
24 4 0.14
25 2 0.07
26 23 0.79
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.30
Consensus pattern (26 bp):
ATCCGTATGCTTAGACTGGGAATGAA
Found at i:34566878 original size:368 final size:366
Alignment explanation
Indices: 34565733--34567099 Score: 1317
Period size: 368 Copynumber: 3.7 Consensus size: 366
34565723 CCGCTACCAT
* *
34565733 AACCCTC-GTCCGGCTGGGGCTTAGACATGGAATGAACTCTC-TATGCCTAAGCCAACCCACGAA
1 AACCCTCGGTCCGACTAGGGCTTAGACATGGAATGAACTC-CGTATGCCTAAGCCAACCCACGAA
* * * * * *
34565796 ACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATACGTAAGCCGAGGATCGACCCAGTCC
65 ATGAGCGTGCGGGCGCTCAGCCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCC
* * * * * *
34565861 CCCCTGCGTGCTATCAATCCTACTACCGCAACCCTCGATCCGATCCGATCTTAGACTAGGAATGA
130 CCCCTACGTGCTGTCGATCCTGCTACCGCAACCCTCGATCTGATCCGATCTTAGACTGGGAATGA
* * *
34565926 ACTCTGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAGCGAGCGTGCG
195 ACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCG
* ** * * * ** * **
34565991 GGCGTTCAGTCAATCGGAGAGGCCGATCGGAAAGGCATAATACACAAGT-TGGGATCAG-CCTAT
260 GGCGCTCAGTCGGT-GGAGAGGTCGGTAGGAAAGGCATAAT-TGCAAGTCGGGGATCAGCCCGGT
* * * * * * *
34566054 CCCCCTCTGCGTACTGTCGATCC-GCTACC-ATCTTGCTGGGCC-G
323 CCCCCTCTACATGCTGTCGATCCTGTTACCGGTCCTGCT--GCCAC
* * * * ** * *
34566097 AACCCTCGTTTCGGTCTAGGGCTTA-AGCATGGAATGTACTTTGTTTGCCTAAGCCAACCTACGA
1 AACCCTCG-GTCCGACTAGGGCTTAGA-CATGGAATGAACTCCGTATGCCTAAGCCAACCCACGA
** * * * * *
34566161 AAT-AGCGTGCAGGGGCGCTCCAAGGTAGGTCGGAGAGGTAGAAT-CACAAGCTGGGGGATCGGC
64 AATGAGCGTGC--GGGCGCT-C-A-GCCGATCGGAGAGGCAGAATGCGCAAGC-CGGGGATCGAC
* * * * * **
34566224 CCGATCCCCCCTATGTGCTGTCGATCCTGCTGCCGCAACCATCGAT-TCGGTTGGATCTTAGACT
123 CCGGTCCCCCCTACGTGCTGTCGATCCTGCTACCGCAACCCTCGATCT-GATCCGATCTTAGACT
* *
34566288 GGGAAATGTACTCCGTATGACTTAGACTGGGGATGAGCTCCGTATTGCCTAAGT-AACCCATGAA
187 GGG-AATGAACTCCGTATG-CTTAGACTGGGGATGAACTCCGTA-TGCCTAAGTCAACCCATGAA
* ** * ** * *
34566352 ACAAGAATGTGGGTACTCAGTCGGT-------TC-G-A--AAACGGGATAATTGCAAATCGGGGA
249 ACGAGCGTGCGGGCGCTCAGTCGGTGGAGAGGTCGGTAGGAAA-GGCATAATTGCAAGTCGGGGA
* * ** * *
34566406 TCAGCCTGGTCCCCCTCTACATGCTATCGATCCCAT-TTGTCGGTCCTACTACCAC
313 TCAGCCCGGTCCCCCTCTACATGCTGTCGAT-CC-TGTTACCGGTCCTGCTGCCAC
* * * * *
34566461 AACTCTCAGTCCGGCTAGGGCTTAGACATGGAATGTACTCCGTATGCCTAAGCCAACCCATGAAA
1 AACCCTCGGTCCGACTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA
* * * *
34566526 TGAGTGTGCGGGTGCTCAGTCGATCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGGTCCC
66 TGAGCGTGCGGGCGCTCAGCCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCC
* * * * * * *
34566591 CCCTGCGTGCTGCCTATCCTGCTGCTGCAACCCTCGGTCTGATCCGATCTTAGATTGGGAATGAA
131 CCCTACGTGCTGTCGATCCTGCTACCGCAACCCTCGATCTGATCCGATCTTAGACTGGGAATGAA
* * *
34566656 ATCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTTAACCCATGAAACGAGCGTGCGG
196 CTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGG
* * * *
34566721 GTGCTCAGTCGGCTGGAGAGGTCGGTAGGAGAGGTATAATGTGTAAGTCGGGGATCAGCCCGGTC
261 GCGCTCAGTCGG-TGGAGAGGTCGGTAGGAAAGGCATAAT-TGCAAGTCGGGGATCAGCCCGGTC
34566786 CCCCTCTACATGCTGTCGATCCTGTTACCGGTCCTGCTGCCAC
324 CCCCTCTACATGCTGTCGATCCTGTTACCGGTCCTGCTGCCAC
* * * *
34566829 AACGCTCGGTCTGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAA
1 AACCCTCGGTCCGACTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA
* * * * *
34566894 GGAGCATGCGGGCGCTCAGCCGATCGGAGAGGCAGAATGTGCAAGCCGGGGATCGGCTCGGTCCC
66 TGAGCGTGCGGGCGCTCAGCCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCC
* * * * *
34566959 TCCTACGTGCTGTCGATCCTGCTACCGTAACCCTCGGTC-CAGTCTGATCTTAGACTGGGAATGA
131 CCCTACGTGCTGTCGATCCTGCTACCGCAACCCTCGATCTGA-TCCGATCTTAGACTGGGAATGA
* * * * *
34567023 ACTCCATATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGTGTGCA
195 ACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCG
34567088 GGCGCTCAGTCG
260 GGCGCTCAGTCG
34567100 ACCAGAGAGG
Statistics
Matches: 806, Mismatches: 155, Indels: 80
0.77 0.15 0.08
Matches are distributed among these distances:
356 9 0.01
357 52 0.06
358 13 0.02
359 78 0.10
360 15 0.02
361 16 0.02
362 25 0.03
363 52 0.06
364 23 0.03
365 15 0.02
366 46 0.06
367 10 0.01
368 260 0.32
369 48 0.06
370 75 0.09
371 13 0.02
372 47 0.06
373 9 0.01
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.22
Consensus pattern (366 bp):
AACCCTCGGTCCGACTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA
TGAGCGTGCGGGCGCTCAGCCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCC
CCCTACGTGCTGTCGATCCTGCTACCGCAACCCTCGATCTGATCCGATCTTAGACTGGGAATGAA
CTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGG
GCGCTCAGTCGGTGGAGAGGTCGGTAGGAAAGGCATAATTGCAAGTCGGGGATCAGCCCGGTCCC
CCTCTACATGCTGTCGATCCTGTTACCGGTCCTGCTGCCAC
Found at i:34567036 original size:26 final size:26
Alignment explanation
Indices: 34567007--34567059 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
34566997 CCAGTCTGAT
34567007 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
34567033 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
34567059 C
1 C
34567060 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:34570597 original size:27 final size:26
Alignment explanation
Indices: 34570567--34570621 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
34570557 TATGGGTTGA
34570567 CTTAGGCATACGGAGTTCATCCCCAGT
1 CTTA-GCATACGGAGTTCATCCCCAGT
* * *
34570594 CTTAGTATATGGAGTTCATTCCCAGT
1 CTTAGCATACGGAGTTCATCCCCAGT
34570620 CT
1 CT
34570622 AAGATCGAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.22, C:0.25, G:0.20, T:0.33
Consensus pattern (26 bp):
CTTAGCATACGGAGTTCATCCCCAGT
Done.