Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 380 of 402
Found at i:34571807 original size:26 final size:26
Alignment explanation
Indices: 34571777--34571829 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
34571767 GTTGACTTAG
*
34571777 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
34571803 GCATACGAAGTTCATTCCCATTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
34571829 G
1 G
34571830 ATCGAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:34572174 original size:26 final size:26
Alignment explanation
Indices: 34572144--34572196 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34572134 GTTGACTTAG
*
34572144 GCATACGAAGTTCATCCCCAGTTTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
34572170 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
34572196 G
1 G
34572197 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:34572675 original size:26 final size:26
Alignment explanation
Indices: 34572646--34572698 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34572636 GTTAGCTTAG
*
34572646 GCATATAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
34572672 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
34572698 G
1 G
34572699 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:34573468 original size:26 final size:26
Alignment explanation
Indices: 34573429--34573481 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34573419 AGTCTGATCT
*
34573429 TAGACTGGGAATGAACTCCGTTTGCC
1 TAGACTGGGAATGAACTCCGTATGCC
*
34573455 TAGACTGGGGATGAACTCCGTATGCC
1 TAGACTGGGAATGAACTCCGTATGCC
34573481 T
1 T
34573482 CAGTCAACTC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCC
Found at i:34574688 original size:26 final size:26
Alignment explanation
Indices: 34574652--34574704 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34574642 CCGGTCCGAT
34574652 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGATTGGGAATGAACTCCATATG
* *
34574678 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGATTGGGAATGAACTCCATATG
34574704 C
1 C
34574705 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTCCATATG
Found at i:34574987 original size:15 final size:16
Alignment explanation
Indices: 34574962--34574991 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
34574952 TCGATCCCCC
34574962 CTGCGTGCTGTCGATA
1 CTGCGTGCTGTCGATA
34574978 CTGC-TGCTGTCGAT
1 CTGCGTGCTGTCGAT
34574992 CTGATCTTAG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.10, C:0.27, G:0.30, T:0.33
Consensus pattern (16 bp):
CTGCGTGCTGTCGATA
Found at i:34575026 original size:26 final size:26
Alignment explanation
Indices: 34574997--34575049 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34574987 TCGATCTGAT
*
34574997 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
34575023 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
34575049 C
1 C
34575050 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34575488 original size:26 final size:26
Alignment explanation
Indices: 34575450--34575502 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
34575440 GGCTAAAAAT
*
34575450 CTTAGACTGGGAATCAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCATATG
*
34575476 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATCAACTCCATATG
34575502 C
1 C
34575503 ATAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCATATG
Found at i:34575843 original size:26 final size:26
Alignment explanation
Indices: 34575804--34575857 Score: 92
Period size: 26 Copynumber: 2.1 Consensus size: 26
34575794 TTCGGTCTGA
34575804 GCTTAGACTGGGAATGAACTCCGTAT
1 GCTTAGACTGGGAATGAACTCCGTAT
34575830 GCTTAGACAT-GGAATGAACTCCGTAT
1 GCTTAGAC-TGGGAATGAACTCCGTAT
34575856 GC
1 GC
34575858 CTAAGCCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 26 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (26 bp):
GCTTAGACTGGGAATGAACTCCGTAT
Found at i:34576186 original size:159 final size:158
Alignment explanation
Indices: 34575830--34576187 Score: 382
Period size: 158 Copynumber: 2.3 Consensus size: 158
34575820 AACTCCGTAT
* **
34575830 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGGGTGTGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGCACTCAA
* * *
34575895 CCGACCGGAGAGGTAGAATACGTAAGCCAAGGATCAACCTAGTCCCCCCTGCGTGCTGTCAATCC
66 CCGACCGGAGAGGTAGAATACATAAGCCAAGGATCAACCCAGTCCCCCCTGCATGCTGTCAATCC
*
34575960 TGTTGCCGCAACCCTCGATCCGGTCCAA
131 TGTTGCCACAACCCTCGATCCGGTCCAA
* * * ** * *
34575988 TCTTAGAC-TGGGAATAAACTCCGTACGCCTAAGTTAACCCATGAAATGAGCGTGTGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGCACTCA
* * * ** ** * ***
34576052 GCC-AGCCGGAGAGGTAGAATGCATAAGTCGGGGATCGGCCCGGTCCCCCTCTGCATGCTGTTGG
65 ACCGA-CCGGAGAGGTAGAATACATAAGCCAAGGATCAACCCAGTCCCCC-CTGCATGCTGTCAA
* * *
34576116 TCCTGTTGCCACAACCCTCGGTCC-GTCTAGG
128 TCCTGTTGCCACAACCCTCGATCCGGTCCA-A
*
34576147 GCTTAGACATGGAATGAACTGCC-TATGTCTAAGCCAACCCA
1 GCTTAGACATGGAATGAACT-CCGTATGCCTAAGCCAACCCA
34576188 CAAAACGGGT
Statistics
Matches: 160, Mismatches: 34, Indels: 11
0.78 0.17 0.05
Matches are distributed among these distances:
157 2 0.01
158 93 0.58
159 62 0.39
160 3 0.02
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.21
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGCACTCAA
CCGACCGGAGAGGTAGAATACATAAGCCAAGGATCAACCCAGTCCCCCCTGCATGCTGTCAATCC
TGTTGCCACAACCCTCGATCCGGTCCAA
Found at i:34576742 original size:26 final size:26
Alignment explanation
Indices: 34576713--34576765 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34576703 CCGATCTGAT
34576713 CTTAGACT-GGGAGTGAACTCCGTATG
1 CTTAGACTGGGGA-TGAACTCCGTATG
*
34576739 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
34576765 C
1 C
34576766 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.23, C:0.19, G:0.30, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCGTATG
Found at i:34576997 original size:21 final size:21
Alignment explanation
Indices: 34576971--34577014 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
34576961 CCCGTTTTAT
*
34576971 CCCCTCTACGTGCTGTCGATC
1 CCCCTCTACGTGCTATCGATC
*
34576992 CCCCTCTGCGTGCTATCGATC
1 CCCCTCTACGTGCTATCGATC
34577013 CC
1 CC
34577015 GCTACTGGTC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.09, C:0.45, G:0.18, T:0.27
Consensus pattern (21 bp):
CCCCTCTACGTGCTATCGATC
Found at i:34577571 original size:26 final size:26
Alignment explanation
Indices: 34577530--34577582 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34577520 CTGATTTGAT
34577530 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
34577556 CTTAGACTAGGG-ATGAACTTCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
34577582 C
1 C
34577583 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34578001 original size:159 final size:159
Alignment explanation
Indices: 34577710--34578049 Score: 481
Period size: 159 Copynumber: 2.1 Consensus size: 159
34577700 CTGCCGGTCT
* *
34577710 TGCTACCACAACCCTCGGTCC-GATAGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCA
1 TGCTACCACAACCCTCGATCCGGATAGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
* * * *
34577774 ACCCATGAAACGAGCGTGCGGGCGCTGAGCCGGTCAGGGAGGCATAATGCGCAAGCCGGGCATTG
66 ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGTCAGGGAGGCAGAATGCGCAAGCCGGGCATCG
* * *
34577839 GCCCGGTCCCCTTCTGCGTGCTGTCGATCC
131 GCCCGATCCCC-CCTGCATGCTGTCGATCC
*
34577869 TGCTACCACAACCCTCGATCCGGCTA-GGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
1 TGCTACCACAACCCTCGATCCGGATAGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
* * * * *
34577933 ACCCACGAAACGGGTGTGCGGGCGCTCAGCCGGT-TGGAGAGGTAGAATGTGCAAGCCAGGG-AT
66 ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGTCAGG-GAGGCAGAATGCGCAAGCC-GGGCAT
34577996 CGGCCCGATCCCCCCTGCATGCTGTCGATCC
129 CGGCCCGATCCCCCCTGCATGCTGTCGATCC
*
34578027 TGCTGCCACAACCCTCGATCCGG
1 TGCTACCACAACCCTCGATCCGG
34578050 TCCAATCTTA
Statistics
Matches: 162, Mismatches: 16, Indels: 7
0.88 0.09 0.04
Matches are distributed among these distances:
158 40 0.25
159 116 0.72
160 6 0.04
ACGTcount: A:0.21, C:0.32, G:0.29, T:0.18
Consensus pattern (159 bp):
TGCTACCACAACCCTCGATCCGGATAGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGTCAGGGAGGCAGAATGCGCAAGCCGGGCATCG
GCCCGATCCCCCCTGCATGCTGTCGATCC
Found at i:34578085 original size:26 final size:26
Alignment explanation
Indices: 34578056--34578108 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
34578046 CCGGTCCAAT
*
34578056 CTTAGACCGGGAATGAACTCCGTATG
1 CTTAGACCGGGAATGAACTCCATATG
* *
34578082 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACCGGGAATGAACTCCATATG
34578108 C
1 C
34578109 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACCGGGAATGAACTCCATATG
Found at i:34578816 original size:26 final size:26
Alignment explanation
Indices: 34578778--34578856 Score: 133
Period size: 26 Copynumber: 3.0 Consensus size: 26
34578768 GGCTCAAACT
*
34578778 CTTAGAC-TAGGAATGAACCCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
34578804 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
34578830 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
34578856 C
1 C
34578857 CTAAGCCAAC
Statistics
Matches: 51, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
26 50 0.98
27 1 0.02
ACGTcount: A:0.30, C:0.22, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:34579218 original size:159 final size:157
Alignment explanation
Indices: 34578829--34579289 Score: 455
Period size: 159 Copynumber: 2.9 Consensus size: 157
34578819 AACTCCGTAT
* * *
34578829 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGCGTTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTG-AGGCGCTCAG
* * * *
34578894 CAGGCCGGAG-GGACAGAATGCGCAAGCC-AGGGATCGGCCCGGTCCCCCCCTGAGTGCTGTCGA
65 CAGGCCGGAGAGG-CAAAATGTGCAAGCCGA-GGATCGGCCCGGT-CCCCCCTGCGTGCTGCCGA
** * *
34578957 TCTTGCTGCCACAACCTTCGGTCCGATCCAA
127 TCCCGCTGCCACAACCCTCGGTCCGAGCCAA
* * * * * * *
34578988 TCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGCCTGAGAGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGAG-GCGCTCA
* * * * *
34579052 GCAGGCCGAAGAGGCATAATGTGTAAGCCGAGGATTGGCCCGGTCCCCCTCTGCGTGCTGCCGGT
64 GCAGGCCGGAGAGGCAAAATGTGCAAGCCGAGGATCGGCCCGGTCCCCC-CTGCGTGCTGCCGAT
* * *
34579117 CCCGCTGTCACAACCCTCGGTCC-AGCTAGG
128 CCCGCTGCCACAACCCTCGGTCCGAGCCA-A
* *
34579147 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAAGCGTGCAGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTG-AGGCGCTC-A
* * * * * * *
34579212 TC-GGCCGGGGAGGCAAAATGTGCATGCCGAGGATCGACCTGGTCCCCCCTGCGTACTGCTGATC
64 GCAGGCCGGAGAGGCAAAATGTGCAAGCCGAGGATCGGCCCGGTCCCCCCTGCGTGCTGCCGATC
** *
34579276 ATGCTGCCGCAACC
129 CCGCTGCCACAACC
34579290 TTCAGTCTAG
Statistics
Matches: 243, Mismatches: 50, Indels: 19
0.78 0.16 0.06
Matches are distributed among these distances:
158 33 0.14
159 202 0.83
160 8 0.03
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.18
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGAGGCGCTCAGC
AGGCCGGAGAGGCAAAATGTGCAAGCCGAGGATCGGCCCGGTCCCCCCTGCGTGCTGCCGATCCC
GCTGCCACAACCCTCGGTCCGAGCCAA
Found at i:34579995 original size:20 final size:21
Alignment explanation
Indices: 34579962--34580005 Score: 63
Period size: 20 Copynumber: 2.1 Consensus size: 21
34579952 ATCGACCCAG
* *
34579962 TCCCCCTCTGCATGCTGTCGA
1 TCCCCCTCTACATGCTGTCAA
34579983 TCCCCC-CTACATGCTGTCAA
1 TCCCCCTCTACATGCTGTCAA
34580003 TCC
1 TCC
34580006 TGTTGTCACA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 15 0.71
21 6 0.29
ACGTcount: A:0.14, C:0.45, G:0.14, T:0.27
Consensus pattern (21 bp):
TCCCCCTCTACATGCTGTCAA
Found at i:34581070 original size:26 final size:26
Alignment explanation
Indices: 34581029--34581081 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
34581019 ACGATCCGAT
34581029 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
34581055 CTTAGACTAGGG-ATGAACTCTGTATG
1 CTTAGACT-GGGAATGAACTCTGTATG
34581081 C
1 C
34581082 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:34582304 original size:26 final size:26
Alignment explanation
Indices: 34582253--34582305 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
34582243 GGCTCAAAAT
* *
34582253 CTTAGACTGGGAATGAACTTCTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
34582279 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
34582305 C
1 C
34582306 CTAAGCCAAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34582704 original size:159 final size:158
Alignment explanation
Indices: 34582278--34582711 Score: 464
Period size: 158 Copynumber: 2.7 Consensus size: 158
34582268 AACTTCTTAT
* * ** * *
34582278 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAGACAAGAAA-GGAGCGTGTGGGCGCTCA
1 GCTTAGATATGGAATGAACTCCCTATGCCTAAGCCAACCCAAGAAACGG-GCGTGCGGGCACTCA
* * * * * * *
34582342 GTCGGCCAGAGAGGTAGAATGCGCAAGCCGGGGATCAGCCCGGTCCCCACCTGTATGTTGTCGAT
65 GCCGGCCGGAGAGGAAGAATGCGCAAGCTGGGGATCGGCCCGGTCCCC-CCTGCATGCTGTCGAT
* *
34582407 CCTGCTGCCACAACCCTCAGTCCGATCCGA
129 CCCGCTACCACAACCCTCAGTCCGATCCGA
* * * * * * * *
34582437 TCTTAGACTA-GGAATGAACT-CCTATGCATAAGTCAACCCATGAAACGAGCGTACGGGCATTTA
1 GCTTAGA-TATGGAATGAACTCCCTATGCCTAAGCCAACCCAAGAAACGGGCGTGCGGGCACTCA
* * * * * * * *
34582500 GCAGGCCGAAGAGGCATAATACGCAAG-TCAGGGATCGGCCTGGTCCCCCTCTGCATGCTGTCGG
65 GCCGGCCGGAGAGGAAGAATGCGCAAGCT-GGGGATCGGCCCGGTCCCCC-CTGCATGCTGTCGA
* *
34582564 TCCCGCTACCACAACCCTCAGTCCGA-CTGGG
128 TCCCGCTACCACAACCCTCAGTCCGATC-CGA
*
34582595 GCTTAGATATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCAG
1 GCTTAGATATGGAATGAACTCCCTATGCCTAAGCCAACCCAAGAAACGGGCGTGCGGGCACTCAG
*
34582660 CCGGCCGGAGAGGAAGAATGCGCAAGCTGGGGATTGGCCCGGTCCCCCCTGC
66 CCGGCCGGAGAGGAAGAATGCGCAAGCTGGGGATCGGCCCGGTCCCCCCTGC
34582712 GGGCTATCGA
Statistics
Matches: 219, Mismatches: 48, Indels: 17
0.77 0.17 0.06
Matches are distributed among these distances:
157 4 0.02
158 121 0.55
159 92 0.42
160 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.18
Consensus pattern (158 bp):
GCTTAGATATGGAATGAACTCCCTATGCCTAAGCCAACCCAAGAAACGGGCGTGCGGGCACTCAG
CCGGCCGGAGAGGAAGAATGCGCAAGCTGGGGATCGGCCCGGTCCCCCCTGCATGCTGTCGATCC
CGCTACCACAACCCTCAGTCCGATCCGA
Found at i:34582806 original size:26 final size:26
Alignment explanation
Indices: 34582754--34582806 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
34582744 CCAGTTCAAT
*
34582754 CTTAAACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGCATG
* * *
34582780 CTTAGACTGGGGATGAACTTCGCATG
1 CTTAAACTGGGAATGAACTCCGCATG
34582806 C
1 C
34582807 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGCATG
Found at i:34584178 original size:26 final size:26
Alignment explanation
Indices: 34584149--34584201 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
34584139 CACTCAAAAT
*
34584149 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCATATG
*
34584175 CTTAGACATGGACTGAACTCCATATG
1 CTTAGACATGGAATGAACTCCATATG
34584201 C
1 C
34584202 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:34584990 original size:356 final size:356
Alignment explanation
Indices: 34584405--34585094 Score: 947
Period size: 356 Copynumber: 1.9 Consensus size: 356
34584395 AACCGACCGA
34584405 AGAGGCATAATGCGCAAGCCAGGGATCGACCCGGTCCCCCTCTGCATGCTGCCGGTCCCGCTACC
1 AGAGGCATAATGCGCAAGCCAGGGATCGACCCGGTCCCCCTCTGCATGCTGCCGGTCCCGCTACC
*
34584470 ACAACCCTCGATCTAGCTGGGGCTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCCATGA
66 ACAACCCTCGATCCAGCTGGGGCTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCCATGA
* * * *
34584535 AACAGGCGTGCGGGCACTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATC
131 AACAAGCGTACGGGCACTCAGCCGGCCGGAGAGGCAGAATGCGCAAGCCAAGGATCGACCCGATC
* * * *
34584600 CCCCCTGCATGCTATCGATCTTGCTGCTGCAACCCGCGATCTGGTCTGATCTTAGACCGGGAATG
196 CCCCCTGCATGCTACCGATCTTGCTACCGCAACCCGCGATCCGGTCTGATCTTAGACCGGGAATG
** * *
34584665 AACT-TCGTATGCTTAGAC-TAGGGTTGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGT
261 AACTCT-GTATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGAGT
*
34584728 GCGGGCGCTCAGCCGACTGGAGAAGCCAGTCGG
324 GCAGGCGCTCAGCCGACTGGAGAAGCCAGTCGG
* ** * * ** * *
34584761 AGAGGCATAATGCGCAAGCC-GAGTATC-AGCTTGGTCCCCTTCTGCGTGCTTTCGGTCCTGCTG
1 AGAGGCATAATGCGCAAGCCAG-GGATCGA-CCCGGTCCCCCTCTGCATGCTGCCGGTCCCGCTA
* * * * * * *
34584824 CGATAACCCTCGATCCGGTTGGGGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCAT
64 CCACAACCCTCGATCCAGCTGGGGCTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCCAT
* * *
34584889 GAAACAAGCGTATGGGCCCTCAGCCGGCCGGAGAGGCAGAATGCGCAAGCCAAGGATCGACCCGT
129 GAAACAAGCGTACGGGCACTCAGCCGGCCGGAGAGGCAGAATGCGCAAGCCAAGGATCGACCCGA
** * * *
34584954 TCCCCCCTGGGTGCTACCGATCTTGCTACCGCAACCCTCGATCCGGTCTGATCTTAGGCTGGGAA
194 TCCCCCCTGCATGCTACCGATCTTGCTACCGCAACCCGCGATCCGGTCTGATCTTAGACCGGGAA
* * *
34585019 TGAACTCTGTATGCTTATACATGGAATGAACTGCGTATGCCTAAGCCAACCCATGAAATGAGAGT
259 TGAACTCTGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGAGT
34585084 GCAGGCGCTCA
324 GCAGGCGCTCA
34585095 ACAGGCCGAA
Statistics
Matches: 289, Mismatches: 41, Indels: 8
0.86 0.12 0.02
Matches are distributed among these distances:
355 2 0.01
356 285 0.99
357 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (356 bp):
AGAGGCATAATGCGCAAGCCAGGGATCGACCCGGTCCCCCTCTGCATGCTGCCGGTCCCGCTACC
ACAACCCTCGATCCAGCTGGGGCTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCCATGA
AACAAGCGTACGGGCACTCAGCCGGCCGGAGAGGCAGAATGCGCAAGCCAAGGATCGACCCGATC
CCCCCTGCATGCTACCGATCTTGCTACCGCAACCCGCGATCCGGTCTGATCTTAGACCGGGAATG
AACTCTGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGAGTGC
AGGCGCTCAGCCGACTGGAGAAGCCAGTCGG
Found at i:34585176 original size:184 final size:184
Alignment explanation
Indices: 34584847--34585216 Score: 499
Period size: 184 Copynumber: 2.0 Consensus size: 184
34584837 TCCGGTTGGG
* * ** *
34584847 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACAAGCGTATGGGCCCTCAG
1 GCTTAGACATGGAATGAACTGCGTATGCCTAAGCCAACCCATGAAACAAGAGTACAGGCCCTCAA
* * * * *
34584912 CCGGCCGGAGAGGCAGAATGCGCAAGCCAAGGATCGACCCGTTCCCCCCTGGGTGCTACCGATCT
66 CAGGCCGAAGAGGCAGAATGCGCAAGCCAAGGATCGACCCGGTCCCCCCTGCGTGCTACCGATCC
* *
34584977 TGCTACCGCAACCCTC-GATCCGGTCTGATCTTAGGCTGGGAATGAACTCTGTAT
131 TACTACCGCAACCCTCAG-TCCGGTCTGATCTTAGACTGGGAATGAACTCTGTAT
* ** * *
34585031 GCTTATACATGGAATGAACTGCGTATGCCTAAGCCAACCCATGAAATGAGAGTGCAGGCGCTCAA
1 GCTTAGACATGGAATGAACTGCGTATGCCTAAGCCAACCCATGAAACAAGAGTACAGGCCCTCAA
** * **
34585096 CAGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATTGACCCGGTCCCCCCTGCGTGCTGTCGATCC
66 CAGGCCGAAGAGGCAGAATGCGCAAGCCAAGGATCGACCCGGTCCCCCCTGCGTGCTACCGATCC
** *
34585161 TACTGTCGTAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTAT
131 TACTACCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTAT
34585215 GC
1 GC
34585217 CTAAGTCAAC
Statistics
Matches: 160, Mismatches: 25, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
184 159 0.99
185 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.21
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTGCGTATGCCTAAGCCAACCCATGAAACAAGAGTACAGGCCCTCAA
CAGGCCGAAGAGGCAGAATGCGCAAGCCAAGGATCGACCCGGTCCCCCCTGCGTGCTACCGATCC
TACTACCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTAT
Found at i:34585386 original size:159 final size:159
Alignment explanation
Indices: 34585031--34585942 Score: 823
Period size: 159 Copynumber: 5.8 Consensus size: 159
34585021 AACTCTGTAT
* * * * * * * *
34585031 GCTTATACATGGAATGAACTGCGTATGCCTAAGCCAACCCATGAAATGAGAGTGCAGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAG
* ** * * * * * * *
34585096 CAGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATTGACCCGGTCCCCC-CTGCGTGCTGTCGATC
66 CCGATCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCTCTACGTGCTATCGGTC
* * ** *
34585160 CTACTGTCGTAACCCTC-AGTCCGGTCT-GA
131 CTGCTGCCACAACCCTCGA-TCCGG-CTGGG
* ** * *
34585189 TCTTAGAC-TGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGCGCTAA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCA
* * * * * *
34585253 GTCGATCAGAGAGGCATAATGCGCAAGTCAGGGATCGGCCCAGTCCCCCTCTACGTGCTGTCGGT
65 GCCGATCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCTCTACGTGCTATCGGT
* * *
34585318 -CTCGCTGCCACAACCCTCGTTCCGACTAGG
130 CCT-GCTGCCACAACCCTCGATCCGGCTGGG
* * * * *
34585348 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAG
* * * * * * * * * * * *
34585413 TCGGTCGGAGAGGTAGAATGCGTAAGCCGGGGATTGACCTGAT-CCCC-CTGCGTGCTACCGATC
66 CCGATCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCTCTACGTGCTATCGGTC
** * **
34585476 CTGCTGCTGCAACCCTTGATCCGGTCTGAT
131 CTGCTGCCACAACCCTCGATCCGG-CTGGG
* * * *
34585506 G-TTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCA
* * *
34585569 GCCGA-CTGGAGAGGCATAATGCGCGAGCC-GAGGATCGGCCCGGTCCCCCTCTAAGTGCTATCG
65 GCCGATC-GGAGAGGCAGAATGCGCAAGCCAG-GGATCGGCCCGGTCCCCCTCTACGTGCTATCG
* * * * *
34585632 GTCCCGCTGCCATAGCCCTCGATCTGGTTGGG
128 GTCCTGCTGCCACAACCCTCGATCCGGCTGGG
* * * * *
34585664 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAACCACGAAATGGGCATGCAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAG
* *
34585729 CCGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCTCTACGTGCTGTCGGTC
66 CCGATCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCTCTACGTGCTATCGGTC
* *
34585794 CTGCTGCCACAACCCTCGGTCCGGTTGGG
131 CTGCTGCCACAACCCTCGATCCGGCTGGG
* * * *
34585823 GCTTAGACAT-GAATTG-ACTCCCTATGCCTAAGCCAACCCATGAAACG-GACGTGCGGGTGCTC
1 GCTTAGACATGGAA-TGAACTCCCTATGCCTAAGCCAACCCACGAAATGAG-CGTACGGGCGCTC
* * *
34585885 AGCCGGTCGGAGAGGCAGAATGCGAAAGCC-GAGGATCGGCCTGGT-CCCC-CTACGTGCT
64 AGCCGATCGGAGAGGCAGAATGCGCAAGCCAG-GGATCGGCCCGGTCCCCCTCTACGTGCT
34585943 GCTGATCGTA
Statistics
Matches: 610, Mismatches: 124, Indels: 42
0.79 0.16 0.05
Matches are distributed among these distances:
156 12 0.02
157 118 0.19
158 190 0.31
159 286 0.47
160 4 0.01
ACGTcount: A:0.22, C:0.29, G:0.29, T:0.19
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAG
CCGATCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCTCTACGTGCTATCGGTC
CTGCTGCCACAACCCTCGATCCGGCTGGG
Found at i:34585617 original size:316 final size:317
Alignment explanation
Indices: 34585031--34585943 Score: 1069
Period size: 316 Copynumber: 2.9 Consensus size: 317
34585021 AACTCTGTAT
* * * * *
34585031 GCTTATACATGGAATGAACTGCGTATGCCTAAGCCAACCCATGAAATGAGAGTGCAGGCGCTCA-
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCAGGCGCTCAG
* *
34585095 ACAGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATTGACCCGGTCCCCCCTGCGTGCTGTCGATC
66 AC-GGTCGGAGAGGCAGAATGCGCAAGCCGGGGATTGACCCGGTCCCCCCTGCGTGCTGTCGATC
* * * * *
34585160 CTACTG-TCGTAACCC-TCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGT
130 CTGCTGCT-GCAACCCTTGA-TCCGGTCTGATGTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * *
34585223 CAACCCACGAAATGAGCGTACGGGCGCTAAGTCGATCAGAGAGGCATAATGCGCAAGTC-AGGGA
193 CAACCCACGAAATGAGCGTACGGGTGCTAAGCCGATCGGAGAGGCATAATGCGCAAGCCGA-GGA
* * *
34585287 TCGGCCCAGTCCCCCTCTACGTGCTGTCGGTCTCGCTGCCACAACCCTCGTTCCGACTAGG
257 TCGGCCCGGTCCCCCTCTACGTGCTGTCGGTCCCGCTGCCACAACCCTCGATCCGACTAGG
* * *
34585348 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCAGGCGCTCAG
* * * * * **
34585413 TCGGTCGGAGAGGTAGAATGCGTAAGCCGGGGATTGACCTGAT-CCCCCTGCGTGCTACCGATCC
66 ACGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATTGACCCGGTCCCCCCTGCGTGCTGTCGATCC
34585477 TGCTGCTGCAACCCTTGATCCGGTCTGATGTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
131 TGCTGCTGCAACCCTTGATCCGGTCTGATGTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* *
34585542 CCCACGAAATGAGCGTACGGGTGCTGAGCCGA-CTGGAGAGGCATAATGCGCGAGCCGAGGATCG
196 CCCACGAAATGAGCGTACGGGTGCTAAGCCGATC-GGAGAGGCATAATGCGCAAGCCGAGGATCG
* * * * * ** *
34585606 GCCCGGTCCCCCTCTAAGTGCTATCGGTCCCGCTGCCATAGCCCTCGATCTGGTTGGG
260 GCCCGGTCCCCCTCTACGTGCTGTCGGTCCCGCTGCCACAACCCTCGATCCGACTAGG
* * *
34585664 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAACCACGAAATGGGCATGCAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCAGGCGCTCAG
* * * * * *
34585729 CCGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCTCTACGTGCTGTCGGTC
66 ACGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATTGACCCGGTCCCCC-CTGCGTGCTGTCGATC
** * * ** *
34585794 CTGCTGCCACAACCCTCGGTCCGGT-TGGGGCTTAGACAT--GAATTG-ACTCCCTATGCCTAAG
130 CTGCTGCTGCAACCCTTGATCCGGTCTGATG-TTAGAC-TGGGAA-TGAACTCCGTATGCCTAAG
* * * * * * * *
34585855 CCAACCCATGAAACG-GACGTGCGGGTGCTCAGCCGGTCGGAGAGGCAGAATGCGAAAGCCGAGG
192 TCAACCCACGAAATGAG-CGTACGGGTGCTAAGCCGATCGGAGAGGCATAATGCGCAAGCCGAGG
*
34585919 ATCGGCCTGGT-CCCC-CTACGTGCTG
256 ATCGGCCCGGTCCCCCTCTACGTGCTG
34585944 CTGATCGTAC
Statistics
Matches: 508, Mismatches: 76, Indels: 26
0.83 0.12 0.04
Matches are distributed among these distances:
315 9 0.02
316 274 0.54
317 181 0.36
318 43 0.08
319 1 0.00
ACGTcount: A:0.22, C:0.29, G:0.29, T:0.19
Consensus pattern (317 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCAGGCGCTCAG
ACGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATTGACCCGGTCCCCCCTGCGTGCTGTCGATCC
TGCTGCTGCAACCCTTGATCCGGTCTGATGTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
CCCACGAAATGAGCGTACGGGTGCTAAGCCGATCGGAGAGGCATAATGCGCAAGCCGAGGATCGG
CCCGGTCCCCCTCTACGTGCTGTCGGTCCCGCTGCCACAACCCTCGATCCGACTAGG
Found at i:34586029 original size:25 final size:26
Alignment explanation
Indices: 34585980--34586031 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
34585970 CCGATCCGAT
34585980 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
34586006 CTTAGACTGGG-ATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
34586031 C
1 C
34586032 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 14 0.56
26 11 0.44
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34586354 original size:26 final size:26
Alignment explanation
Indices: 34586325--34586377 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
34586315 CCGATCCAAT
34586325 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
34586351 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
34586377 C
1 C
34586378 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34586442 original size:346 final size:345
Alignment explanation
Indices: 34585784--34586642 Score: 1156
Period size: 346 Copynumber: 2.5 Consensus size: 345
34585774 CCCTCTACGT
* * *
34585784 GCTGTCGGTCCTGCTGCCACAACCCTCGGTCCGGTTGGGGCTTAGACAT-GAATTG-ACTCCCTA
1 GCTGTCGGTCCTGCTGCCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAA-TGAACTCCATA
** * *
34585847 TGCCTAAGCCAACCCATGAAACG-GACGTGCGGGTGCTCAGCCGGTCGGAGAGGCAGAATGCGAA
65 TGCCTAAGCCAACCCATGAAACGAG-CGTGCTAGTGCTCAGCCGGCCGGAGAGGCAGAATGCGCA
* * * * * * *
34585911 AGCCGAGGATCGGC-CTGGT-CCCCCTACGTGCTGCTGATCGTACTGCCATAAGCCTCGATCCGA
129 AGCCGGGGATCGGCTC-GATCCCCCCTGCGTGCTGCCGATCCTACTACCACAAGCCTCGATCCGA
* *
34585974 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGATGAACTCTGTATGCCTAAGTC
193 TCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGATGAACTCCGTATGCCTAAGTC
* ** * *
34586039 AACCCATGAAACGAGCGTACAGGTGCTCAACCGATCGAAGAGGTCGGTCGGAGAGGCATAATGCG
258 AACCCATGAAACGAGCGTACAGGTGCTCAACCGATCGAAGAGGCCAATCGAAGAGGCATAATACG
34586104 CAAGCCAGGGATCAGTCGA-CCTC
323 CAAGCCAGGGATCAGTCGATCC-C
* * * *
34586127 GCTGTCGGTCCTGCTGCCACAACCCTCGATCCAGCTAGGGCTTTGACATGGAATGAACTCCGTAT
1 GCTGTCGGTCCTGCTGCCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCATAT
* *
34586192 GCCTAAGCCGACCCATGAAACGAGCGTGCTAGTGCTCAGCCGGCCGGAGAGGTAGAATGCGCAAG
66 GCCTAAGCCAACCCATGAAACGAGCGTGCTAGTGCTCAGCCGGCCGGAGAGGCAGAATGCGCAAG
* * *
34586257 CCGGGGATCGGCTCGATCCCCCCTGCGTGCTGCCGATCCTGCTATCGCAAGCCTCGATCCGATCC
131 CCGGGGATCGGCTCGATCCCCCCTGCGTGCTGCCGATCCTACTACCACAAGCCTCGATCCGATCC
34586322 AATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAA
196 AATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT-GGGATGAACTCCGTATGCCTAAGTCAA
* * *
34586387 CCCATGAAACGAGCGTACGGGTGCTCAGCCGATCGGAGAGGCCAATCGAAGAGGCATAATACGCA
260 CCCATGAAACGAGCGTACAGGTGCTCAACCGATCGAAGAGGCCAATCGAAGAGGCATAATACGCA
* *
34586452 AGCCGGGGATTAGTCGATCCC
325 AGCCAGGGATCAGTCGATCCC
* * * * *
34586473 ACTGTCGATCTTGCTGCCACAACCCTCGGTCCAGCTGGGGCTTAGACATGCAATGAACTCTATAT
1 GCTGTCGGTCCTGCTGCCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCATAT
* * * * * *
34586538 GCCTAAGCCAACCCACGAAACGAGCGTGCTAGTGCTTAGTCGACTGGAGAGGCATAATGCGCAAG
66 GCCTAAGCCAACCCATGAAACGAGCGTGCTAGTGCTCAGCCGGCCGGAGAGGCAGAATGCGCAAG
* * * *
34586603 CCAGGGATCAGCTC-AGTCCCCCTTTGCGTGCTGTCGATCC
131 CCGGGGATCGGCTCGA-TCCCCC-CTGCGTGCTGCCGATCC
34586643 CGCTGTCGGT
Statistics
Matches: 452, Mismatches: 55, Indels: 14
0.87 0.11 0.03
Matches are distributed among these distances:
343 46 0.10
344 81 0.18
345 78 0.17
346 230 0.51
347 17 0.04
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (345 bp):
GCTGTCGGTCCTGCTGCCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCATAT
GCCTAAGCCAACCCATGAAACGAGCGTGCTAGTGCTCAGCCGGCCGGAGAGGCAGAATGCGCAAG
CCGGGGATCGGCTCGATCCCCCCTGCGTGCTGCCGATCCTACTACCACAAGCCTCGATCCGATCC
AATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGATGAACTCCGTATGCCTAAGTCAAC
CCATGAAACGAGCGTACAGGTGCTCAACCGATCGAAGAGGCCAATCGAAGAGGCATAATACGCAA
GCCAGGGATCAGTCGATCCC
Found at i:34586759 original size:171 final size:170
Alignment explanation
Indices: 34586464--34586781 Score: 404
Period size: 171 Copynumber: 1.9 Consensus size: 170
34586454 CCGGGGATTA
* * ** *
34586464 GTCGATCCCACTGTCGATCTTGCTGCCACAACCCTCGGTCCAGCTGGGGCTTAGACATGCAATGA
1 GTCGATCCCACTGTCGATCCTACTGCCACAACCCTCAATCCAGCTGGGGCTTAGACATGCAATAA
* * ** *
34586529 ACTCTATATGCCTAAGCCAACCCACGAAACGAGCGTGCTAGTGCTTAGTCGACTGGAGAGGCATA
66 ACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCACTCAGTCGACTGGAGAGGCA-A
34586594 ATGCGCAAGCCAGGGATCAGCTCAGTCCCCCTTTGCGTGCT
130 ATGCGCAAGCCAGGGATCAGCTCAGTCCCCCTTTGCGTGCT
* * * * * *
34586635 GTCGATCCCGCTGTCGGTCCTACTGCCACAACCCTCAATTCGGCTGGGGTTTAGACATGGAATAA
1 GTCGATCCCACTGTCGATCCTACTGCCACAACCCTCAATCCAGCTGGGGCTTAGACATGCAATAA
* * * * *
34586700 ACTCCATATGCCTAAGCCATCCCATGAAACGAGTGTGCGAGCACTCAGTC-AGTTGGAGAGGCAG
66 ACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCACTCAGTCGA-CTGGAGAGGCAA
* *
34586764 ATGCGTAAGCCGGGGATC
130 ATGCGCAAGCCAGGGATC
34586782 GACTTGATCC
Statistics
Matches: 123, Mismatches: 23, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
170 17 0.14
171 106 0.86
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (170 bp):
GTCGATCCCACTGTCGATCCTACTGCCACAACCCTCAATCCAGCTGGGGCTTAGACATGCAATAA
ACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCACTCAGTCGACTGGAGAGGCAAA
TGCGCAAGCCAGGGATCAGCTCAGTCCCCCTTTGCGTGCT
Found at i:34586869 original size:26 final size:26
Alignment explanation
Indices: 34586840--34586892 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34586830 CCGATCTGAT
34586840 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCTGTATG
* *
34586866 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCTGTATG
34586892 C
1 C
34586893 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCTGTATG
Found at i:34587597 original size:26 final size:26
Alignment explanation
Indices: 34587558--34587610 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
34587548 GGCTCAAAAT
* * *
34587558 CTTAGACTTTGAATGGACTCCATATG
1 CTTAGACATGGAATGAACTCCATATG
34587584 CTTAGACATGGAATGAACTCCATATG
1 CTTAGACATGGAATGAACTCCATATG
34587610 C
1 C
34587611 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:34587983 original size:159 final size:155
Alignment explanation
Indices: 34587583--34588083 Score: 421
Period size: 158 Copynumber: 3.2 Consensus size: 155
34587573 GACTCCATAT
34587583 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * ** * *
34587648 TCGGCTGGACAGGCAGAATGCGCAAGCTGAGGATCAACCTGGTCCCCCTGCATGCTGTCGATCTT
66 -CGACTGGAGAGGCAGAATGCGCAAGCCAAGGATCAACCTGGTCCCCCTGCATGCTATCGATCCT
** *
34587713 GCTACTGCAACCCTCAGTTCGACTGA
130 GCTACCACAACCCTCAGTCCGACTGA
* * * * ** * *
34587739 TCTTACACTTAGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTATGGGCGTTGAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * * *
34587804 CTAGCCGAAGTGGCATAATGCGCAAGCCAAGGAT-TAGCTCGGTCCCCCTCTGCATGCTATCGGT
66 CGA-CTGGAGAGGCAGAATGCGCAAGCCAAGGATCAACCT-GGT-CCCC-CTGCATGCTATCGAT
* * *
34587868 CCTGCTACCACAACCCTCGGTCCGGCTAGG
127 CCTGCTACCACAACCCTCAGTCCGACT-GA
* * * * * *
34587898 GCTTAGACATGGAATTAACTCCCTATGGCTAAGCCAAACCATGAAAC-AGGCGTGCGGGTGCTCA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGA-GCGTGCGGGCGCTCA
* * ** *** * * *
34587962 GCCGACTGGAGAGGCAGAATGCGTAAGCCAGGGATCGGCCCAATCCCCCCTGCATACTACCAATC
65 G-CGACTGGAGAGGCAGAATGCGCAAGCCAAGGATCAACCTGGT-CCCCCTGCATGCTATCGATC
** * * *
34588027 CTGCTGTCACAACCCTCAATCCAGTCCGA
128 CTGCTACCACAACCCTCAGTCC-GACTGA
* * * *
34588056 TCTTAGATAGGGAATGAACTCCGTATGC
1 GCTTAGACATGGAATGAACTCCATATGC
34588084 TTAGACTGGG
Statistics
Matches: 264, Mismatches: 72, Indels: 16
0.75 0.20 0.05
Matches are distributed among these distances:
155 4 0.02
156 83 0.31
157 4 0.02
158 88 0.33
159 82 0.31
160 3 0.01
ACGTcount: A:0.26, C:0.30, G:0.25, T:0.20
Consensus pattern (155 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CGACTGGAGAGGCAGAATGCGCAAGCCAAGGATCAACCTGGTCCCCCTGCATGCTATCGATCCTG
CTACCACAACCCTCAGTCCGACTGA
Found at i:34588086 original size:26 final size:26
Alignment explanation
Indices: 34588057--34588109 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34588047 CCAGTCCGAT
34588057 CTTAGA-TAGGGAATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
*
34588083 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
34588109 C
1 C
34588110 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34588531 original size:159 final size:158
Alignment explanation
Indices: 34588263--34588569 Score: 384
Period size: 159 Copynumber: 1.9 Consensus size: 158
34588253 GGTCTAACTT
* * *
34588263 GGGCTTAAACATAGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTG
1 GGGCTTAAACATAGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGTGCTC
* * * * *
34588328 AGCCAGTCGGAGAGGCATAATGCGTAAGCCAGGCATAAGCTCGATCCCCCTCTGCATGCCGTCGA
66 AGCCAGCCGGAGAGGCAGAATGAGCAAGCCAGGCATAAGCTCGATCCCCCT-TACATGCCGTCGA
34588393 TCCTGCTACCACAACCCTCACTCCGGCTA
130 TCCTGCTACCACAACCCTCACTCCGGCTA
* * * *
34588422 GGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCACCCCATGAAACGAGTGTACGGGTGCTC
1 GGGCTTAAACATAGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGTGCTC
* * * * * * * *
34588487 AGCC-GACCGGAGAGGTAGAATGAGCAAGTCGGGGAT-CGACTCGATCCCTCTTACGTGCTGTCG
66 AGCCAG-CCGGAGAGGCAGAATGAGCAAGCCAGGCATAAG-CTCGATCCCCCTTACATGCCGTCG
*
34588550 ATCCTGCTACCGCAACCCTC
129 ATCCTGCTACCACAACCCTC
34588570 GGTCCGGTCT
Statistics
Matches: 125, Mismatches: 21, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
158 30 0.24
159 95 0.76
ACGTcount: A:0.25, C:0.31, G:0.26, T:0.19
Consensus pattern (158 bp):
GGGCTTAAACATAGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGTGCTC
AGCCAGCCGGAGAGGCAGAATGAGCAAGCCAGGCATAAGCTCGATCCCCCTTACATGCCGTCGAT
CCTGCTACCACAACCCTCACTCCGGCTA
Found at i:34588612 original size:26 final size:26
Alignment explanation
Indices: 34588583--34588635 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
34588573 CCGGTCTGAT
*
34588583 CTTAGACTGCGAATGAACTCTGTATG
1 CTTAGACTGCGAATGAACTCCGTATG
* *
34588609 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGCGAATGAACTCCGTATG
34588635 C
1 C
34588636 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGCGAATGAACTCCGTATG
Found at i:34589343 original size:26 final size:26
Alignment explanation
Indices: 34589305--34589357 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34589295 GGCTCAAACT
34589305 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
34589331 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
34589357 C
1 C
34589358 CTGGGCATGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:34589405 original size:26 final size:26
Alignment explanation
Indices: 34589369--34589424 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
34589359 TGGGCATGAT
*
34589369 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
34589395 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
34589421 CTTA
1 CTTA
34589425 AGTCAACCCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34590443 original size:26 final size:26
Alignment explanation
Indices: 34590414--34590465 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
34590404 CCAGTTCGAT
34590414 TTAGACTGGGAATGAACT-TCGTATGC
1 TTAGACTGGGAATGAACTCT-GTATGC
*
34590440 TTAGACTGGGGATGAACTCTGTATGC
1 TTAGACTGGGAATGAACTCTGTATGC
34590466 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.15, G:0.29, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCTGTATGC
Found at i:34591140 original size:25 final size:26
Alignment explanation
Indices: 34591091--34591142 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
34591081 TTGGTCTGAT
**
34591091 CTTAGACTAGGAATGAACTTTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
34591117 CTTAGACT-GGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
34591142 C
1 C
34591143 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 15 0.65
26 8 0.35
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:34591417 original size:159 final size:157
Alignment explanation
Indices: 34591117--34591618 Score: 394
Period size: 159 Copynumber: 3.2 Consensus size: 157
34591107 ACTTTGTATG
* * * * * * ** *
34591117 CTTAGACTGGG-ATGAACTCCGTATGCCTAAGTCAACCCACGGAACGAGCTTGCGGGCATTC-AG
1 CTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGGGCATGCAGGCGCTCAAC
* * * * * * * * *
34591180 TCGGCCGAAAAGGCAGAATGCATAAGCCGGGGATCGACTTGGTCCCCTTCTACGTGTTG-TCGAT
66 T-GACTGGAGAGGCAAAATACGTAAGCCGGGGATCGACCTGGTCCCC-TCTACGTGCTGCT-GAT
** *
34591244 CCTGCAGCCACAACCCTCAGTTTGGTCTGAT
128 CCTATAACCACAACCCTC-GTTTGGTCTGAT
* * *
34591275 CATAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAA-GGAGCGA-GCAGGCGCTGA
1 CTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGG-GC-ATGCAGGCGCTCA
* * ** *
34591338 CCCT-ACTGGAGAGGCATAATGTGTAAGCCGGGGATCGACCTGGTTCCCCTCTGCGTGCTGCTGA
64 -ACTGACTGGAGAGGCAAAATACGTAAGCCGGGGATCGACCTGG-TCCCCTCTACGTGCTGCTGA
* **
34591402 TCCCATAACCACAACCCTCTGTTTGG-CTGGGG
127 TCCTATAACCACAACCCTC-GTTTGGTCT-GAT
* * * *
34591434 CTTAGACAT-GGAATGAACTCCCTATGCTTAAGCCAACCCATGAAACGGGCATGCGGGCGCTCAA
1 CTTAGAC-TGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGGGCATGCAGGCGCTCAA
** * * * * *
34591498 CTGGTTGGAGAGGTAAAATACGTAAGCCGGGGATCGACCCGGT-CCCTCTTACATGCTACCGATC
65 CTGACTGGAGAGGCAAAATACGTAAGCCGGGGATCGACCTGGTCCCCTC-TACGTGCTGCTGATC
** *
34591562 CTACT-ACCGTAACCCTCGATCTGGTCTGAT
129 CTA-TAACCACAACCCTCG-TTTGGTCTGAT
34591592 CTTAGACTGGGAATGAACTCCATATGC
1 CTTAGACTGGGAATGAACTCCATATGC
34591619 TTAGACTGGG
Statistics
Matches: 273, Mismatches: 54, Indels: 34
0.76 0.15 0.09
Matches are distributed among these distances:
157 7 0.03
158 69 0.25
159 187 0.68
160 9 0.03
161 1 0.00
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.22
Consensus pattern (157 bp):
CTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGGGCATGCAGGCGCTCAAC
TGACTGGAGAGGCAAAATACGTAAGCCGGGGATCGACCTGGTCCCCTCTACGTGCTGCTGATCCT
ATAACCACAACCCTCGTTTGGTCTGAT
Found at i:34591628 original size:26 final size:26
Alignment explanation
Indices: 34591592--34591644 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
34591582 CTGGTCTGAT
*
34591592 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAACGAACTCCATATG
* *
34591618 CTTAGACTGGGGACGAACTCCGTATG
1 CTTAGACTGGGAACGAACTCCATATG
34591644 C
1 C
34591645 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAACGAACTCCATATG
Found at i:34592353 original size:26 final size:26
Alignment explanation
Indices: 34592315--34592367 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34592305 GGCTCAAAAT
*
34592315 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
34592341 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
34592367 C
1 C
34592368 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:34592685 original size:159 final size:159
Alignment explanation
Indices: 34592340--34592698 Score: 361
Period size: 159 Copynumber: 2.3 Consensus size: 159
34592330 AACTCCGTAT
* * * *
34592340 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACACACGAAAGGAGTGTGCGGGCCCTCAT
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAAGGAGCGTACGGGCACTCAT
* * * * * *
34592405 CCAGCCAAAAAGGTAGAATGCGCAAGGCGGGGATCGACCAGGTCCCCACCTGCATGCTGTCGATC
66 ACAGCCAAAAAGGCAGAATGCGCAAGCCGGGGATCGACCAGATCCCCACATGCATGCTATCGATC
* * *
34592470 CTGCTACTGTAACCCTCGGTCCAATCTGA
131 CCGCTACTGTAACCCTCGATCCAAGCTGA
* *** * * * *
34592499 TCTTAGAC-TGGGAATGAACTTTGTATGCATAAGTCAACCCACGAAATGAGCGTACGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAAGGAGCGTACGGGCACTCA
* * * * *
34592563 -ACAGGCCGAAGAGGCATAATGCGCAAGCCGGGGATCGCCCCGATCCCC-CTATGCATGCTATC-
65 TACA-GCCAAAAAGGCAGAATGCGCAAGCCGGGGATCGACCAGATCCCCAC-ATGCATGCTATCG
* *
34592625 AGTCCCGCTGCTAG-AACCCTCGATCC-AGCTGGG
128 A-TCCCGCTACT-GTAACCCTCGATCCAAGCT-GA
*
34592658 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCA
34592699 TGAAGCGGAC
Statistics
Matches: 159, Mismatches: 34, Indels: 14
0.77 0.16 0.07
Matches are distributed among these distances:
158 8 0.05
159 149 0.94
160 2 0.01
ACGTcount: A:0.27, C:0.30, G:0.25, T:0.19
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAAGGAGCGTACGGGCACTCAT
ACAGCCAAAAAGGCAGAATGCGCAAGCCGGGGATCGACCAGATCCCCACATGCATGCTATCGATC
CCGCTACTGTAACCCTCGATCCAAGCTGA
Found at i:34592983 original size:184 final size:184
Alignment explanation
Indices: 34592658--34593210 Score: 571
Period size: 184 Copynumber: 3.0 Consensus size: 184
34592648 TCCAGCTGGG
* * * *
34592658 GCTTAGACATGGAATGAACTCC-CTATGCCTAAGCCAACCCATGAAGCGGACGTGTGGGCACTCA
1 GCTTAGACATGGAATGAACTCCGC-ATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCACTCA
* * * * * * * **
34592722 GCC-GATC-GATGAGGAAGAA-ACGCAAGCTGGGGATCAGCTCGATCCCCCCTGCGTGCTACCGA
65 -CCAGACCGGA-GAGGCAGAATGCACAAGCCGGGGATCAGCCCGATCCCCCCTACGTGCTGTCGA
* *
34592784 TCCTGCTGCCGCAACCCTCGATCTGGTCTAATCTTAGACTGGGAATGGACTCCGTAT
128 TCCTGCTGCCGCAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
* * * * * * * **
34592841 GCTTTGAC-TGGGGATGAACTCCGCATGCCTAAGTCAACCCAGGAAATGAGCGTGGGGGTGCTCA
1 GCTTAGACAT-GGAATGAACTCCGCATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCACTC-
* ** * ** * *
34592905 ACCAG-TCGGAGAGGCAGAATGTGCAATCTTGGGATCGGCCCGGTCCCCCCTACGTGCTGTCGAT
64 ACCAGACCGGAGAGGCAGAATGCACAAGCCGGGGATCAGCCCGATCCCCCCTACGTGCTGTCGAT
* *
34592969 CCTGCTGCCGCAACCCTC-AGTCTGGTCTGCTCTTAGACTGGGAATGAACTTCGTAT
129 CCTGCTGCCGCAACCCTCGA-TCTGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
* * *
34593025 GCTTAGACATGGAATGAACTCCGCATGCCTAAGCCAACCCACGAAACGAATGTGCTGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGCATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCACTCAC
* * * *
34593090 CTGACCGGAGAGGTAGAATGCACAAGCCGGGGATCAGCCCGATCCCCCTTATGTGCTGTCGATCC
66 CAGACCGGAGAGGCAGAATGCACAAGCCGGGGATCAGCCCGATCCCCCCTACGTGCTGTCGATCC
** *** * *
34593155 TGCTATCGCAACCCTCGATCCATTCTGATCTTAGACTGGGAATGTACTCCATAT
131 TGCTGCCGCAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
34593209 GC
1 GC
34593211 CTAAGTCAAC
Statistics
Matches: 301, Mismatches: 59, Indels: 19
0.79 0.16 0.05
Matches are distributed among these distances:
182 1 0.00
183 64 0.21
184 234 0.78
185 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.26, T:0.22
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCGCATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCACTCAC
CAGACCGGAGAGGCAGAATGCACAAGCCGGGGATCAGCCCGATCCCCCCTACGTGCTGTCGATCC
TGCTGCCGCAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
Found at i:34593052 original size:26 final size:26
Alignment explanation
Indices: 34593000--34593052 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
34592990 CTGGTCTGCT
* *
34593000 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
34593026 CTTAGACAT-GGAATGAACTCCGCATG
1 CTTAGAC-TGGGAATGAACTCCGCATG
34593052 C
1 C
34593053 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:34593530 original size:26 final size:26
Alignment explanation
Indices: 34593501--34593553 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
34593491 CCGGTTCGAT
*
34593501 CTTAGACTGTGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
34593527 CTTAGATTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
34593553 C
1 C
34593554 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34594510 original size:159 final size:159
Alignment explanation
Indices: 34594221--34594511 Score: 377
Period size: 159 Copynumber: 1.8 Consensus size: 159
34594211 CGTGGCTCAA
* * **
34594221 AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTGAACCCACGAAACGAGCGTACGGGTGCTC
1 AATCTTAGACTGGGAATGAACTCCGTATGCATAAGTGAACCCACGAAACGAGCGTACAGGCACTC
* * *
34594286 AACCGACCGGAGAGGCAGAATGCGCAAGCTGGGGAATGGCCCGATCCCCCCCTACGTATTGTCGA
66 AACCGACCGAAGAGGCAGAATGCGCAACCCGGGGAATGGCCCGATCCCCCCCTACGTATTGTCGA
34594351 TCTTGCTATCGCAACCCTTAGTCCGGTCC
131 TCTTGCTATCGCAACCCTTAGTCCGGTCC
* * * * * *
34594380 AATCTTAGACTGGGAATGAACTCCGTATGCATGAGTTAACCCACGAAACTAGTGTGCAGGCACTG
1 AATCTTAGACTGGGAATGAACTCCGTATGCATAAGTGAACCCACGAAACGAGCGTACAGGCACTC
* ** * * * * *
34594445 AGCCGGTCGAAGAGGCATAATGCGCAACCCGGGG-ATCGGCTCGGTCCCCCTCTACGTGTTGTCG
66 AACCGACCGAAGAGGCAGAATGCGCAACCCGGGGAAT-GGCCCGATCCCCCCCTACGTATTGTCG
34594509 ATC
130 ATC
34594512 CCGCTGCCAC
Statistics
Matches: 110, Mismatches: 21, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
158 2 0.02
159 108 0.98
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.20
Consensus pattern (159 bp):
AATCTTAGACTGGGAATGAACTCCGTATGCATAAGTGAACCCACGAAACGAGCGTACAGGCACTC
AACCGACCGAAGAGGCAGAATGCGCAACCCGGGGAATGGCCCGATCCCCCCCTACGTATTGTCGA
TCTTGCTATCGCAACCCTTAGTCCGGTCC
Found at i:34595098 original size:26 final size:26
Alignment explanation
Indices: 34595069--34595119 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
34595059 TGATCTGATC
34595069 TTAGACTGGGAATGAACTCTGTATGA
1 TTAGACTGGGAATGAACTCTGTATGA
*
34595095 TTAGACTGGGGATGAACTCTGTATG
1 TTAGACTGGGAATGAACTCTGTATG
34595120 CCTAAGTCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.12, G:0.29, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCTGTATGA
Found at i:34595359 original size:368 final size:368
Alignment explanation
Indices: 34594514--34595362 Score: 994
Period size: 368 Copynumber: 2.3 Consensus size: 368
34594504 TGTCGATCCC
* * *
34594514 GCTGCCACAACCCTCGATCTGGCTGGGGCTTAGACATGGAATGAACTCCTTATGCCTAAGGCAAC
1 GCTGCCACAACCCTCGATCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
* ** * * * *
34594579 CCATAAAATGGGCGTGCGGGCACTCAACCGGCTGGAGAGGCAGAATGAGTAAGCCGAGGATCACC
66 CCATAAAATGAGCGTGCGGGTGCTCAACCGGTTGGAGAGGCAAAATGCGCAAGCCGAGGATCACC
** * *
34594644 CTGGTCCCCTTTGCATGCTGCTGATCCTGCTACCGTAACTCTCGGTCTGATCTGATCTTAGATTG
131 CTGGTCCCCCCTGCATGCTGCTGATCCTGCTACCGTAACTCTCGATCTGATCTGATCTTAGACTG
** * *
34594709 AGAATGAGTTATGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCTATGAAACGA
196 AGAATGAACTATGTATGATTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGA
* * * * *
34594774 GCGTACGGACGCTCAGTCGATCGAAAAGACTGACTGGAGAGGCATAATGCGCAAGCCGGGGATCA
261 GCGTACGGACGCTCAGTCGACCGAAAAGACAGACTAGAGAGGCATAATACGCAAGCAGGGGATCA
* * * *
34594839 GCTCGATACCCCTATGCGTGCTGTCAATCCCGTTGCAGGTCCT
326 GCCCGATACCCCTATACGTGCTGCCAATCCCGCTGCAGGTCCT
* * * * *
34594882 GCTACCACAACCCTTGGTCCGGCTGGGGCTTAGACATGGAATAAACTCTGTATGCCTAAGCCAAC
1 GCTGCCACAACCCTCGATCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * *
34594947 CCATAAAACGAGCGTACGGGTGCTCAACCGGTTAGAGTGGCAAAATGCGCAAGCCGATGATCGA-
66 CCATAAAATGAGCGTGCGGGTGCTCAACCGGTTGGAGAGGCAAAATGCGCAAGCCGAGGATC-AC
* * * * *
34595011 CCTGGTCCCCCCTGCGTGCTG-TCGATCCTGCTGCTGT-ACCCTTCGATTTGATCTGATCTTAGA
130 CCTGGTCCCCCCTGCATGCTGCT-GATCCTGCTACCGTAACTC-TCGATCTGATCTGATCTTAGA
* * * *
34595074 CTGGGAATGAACTCTGTATGATTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCATGGAA
193 CTGAGAATGAACTATGTATGATTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAA
* * * * * * * *
34595139 CGAGCGTGCAGG-TGCTCAGTCTACCGGAGAGGTCAGTC-AGAGAGGCATAATACGCCAGCAGGG
258 CGAGCGTAC-GGACGCTCAGTCGACC-GAAAAGACAGACTAGAGAGGCATAATACGCAAGCAGGG
* * * *
34595202 GATCAGCCC-AGTCCCCCTCTACGTGCTGCCAATCTCGCTGCCA-GTCTT
321 GATCAGCCCGA-TACCCCTATACGTGCTGCCAATCCCGCTG-CAGGTCCT
*
34595250 GCTGCCACAACCCTCGATCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGGCTAAGCCAAC
1 GCTGCCACAACCCTCGATCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
* * ** *
34595315 CCACT-AAATGAGTGTGCGGGTGCTCAATCAATTGGAAAGGCAAAATGC
66 CCA-TAAAATGAGCGTGCGGGTGCTCAACCGGTTGGAGAGGCAAAATGC
34595363 TTAAGTCGGG
Statistics
Matches: 400, Mismatches: 73, Indels: 16
0.82 0.15 0.03
Matches are distributed among these distances:
367 5 0.01
368 382 0.95
369 13 0.03
ACGTcount: A:0.24, C:0.27, G:0.27, T:0.22
Consensus pattern (368 bp):
GCTGCCACAACCCTCGATCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
CCATAAAATGAGCGTGCGGGTGCTCAACCGGTTGGAGAGGCAAAATGCGCAAGCCGAGGATCACC
CTGGTCCCCCCTGCATGCTGCTGATCCTGCTACCGTAACTCTCGATCTGATCTGATCTTAGACTG
AGAATGAACTATGTATGATTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGA
GCGTACGGACGCTCAGTCGACCGAAAAGACAGACTAGAGAGGCATAATACGCAAGCAGGGGATCA
GCCCGATACCCCTATACGTGCTGCCAATCCCGCTGCAGGTCCT
Found at i:34595476 original size:26 final size:26
Alignment explanation
Indices: 34595447--34595502 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
34595437 CGGGTCCGAT
*
34595447 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
34595473 CTTAGACAAGGAATGAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
34595499 CTTA
1 CTTA
34595503 TGCCAACCAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.27
Consensus pattern (26 bp):
CTTAGACAAGGAATGAACTCCGTATG
Found at i:34595827 original size:159 final size:157
Alignment explanation
Indices: 34595472--34595846 Score: 376
Period size: 158 Copynumber: 2.4 Consensus size: 157
34595462 AACTCCGTAT
* * * * * * * *
34595472 GCTTAGACAAGGAATGAACTCCGTATGCTTATGCCAACCAACGAAATGAGCGTGCGAGCATTCAG
1 GCTTAGA-TAGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCATTCAG
* * * * * * *
34595537 CCAGTCGGAGAGGTAGAATGTGTAAGCTAGGGACCGACCCGATACCCCCTGTGTGCGGTCGAACC
65 CCAGTCGGAGAGGCAGAATGCGAAAACCAGGGACCGACCCGATACCCCCTCTATGCGGTCGAACC
* *
34595602 TGCTACCGCAACCCTCGGTCCGATCCGA
130 TGCTACCACAACCCTCGATCCGATCCGA
* * * *
34595630 TCTTAGACTAGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGTTGAG
1 GCTTAGA-TAGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCATTCAG
* * * * **
34595695 CCAGTCGGAGAGGCATAATGCGAAAACCAGGGATCGGCCCGAT-CCCCCTCTACATGCTGTCGGT
65 CCAGTCGGAGAGGCAGAATGCGAAAACCAGGGACCGACCCGATACCCCCTCT--ATGCGGTCGAA
* * * *
34595759 CCTGCTGCCACAACCCTCGATCC-AGCTGGG
128 CCTGCTACCACAACCCTCGATCCGATC-CGA
* * *
34595789 GCTTAGATATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTATGGG
1 GCTTAGATA-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGTGGG
34595847 TGCTCAGTTA
Statistics
Matches: 177, Mismatches: 36, Indels: 7
0.80 0.16 0.03
Matches are distributed among these distances:
157 7 0.04
158 92 0.52
159 78 0.44
ACGTcount: A:0.26, C:0.29, G:0.27, T:0.19
Consensus pattern (157 bp):
GCTTAGATAGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCATTCAGC
CAGTCGGAGAGGCAGAATGCGAAAACCAGGGACCGACCCGATACCCCCTCTATGCGGTCGAACCT
GCTACCACAACCCTCGATCCGATCCGA
Found at i:34596967 original size:26 final size:26
Alignment explanation
Indices: 34596938--34596990 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
34596928 CCGGCCTGAT
34596938 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* * *
34596964 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
34596990 C
1 C
34596991 CTAAGTCCAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:34597677 original size:26 final size:26
Alignment explanation
Indices: 34597636--34597688 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34597626 CCGATCCGAT
*
34597636 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
34597662 CTTAGACTGAGG-ATGAACTCCGTATG
1 CTTAGACTG-GGAATGAACTCCGTATG
34597688 C
1 C
34597689 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34598411 original size:26 final size:26
Alignment explanation
Indices: 34598369--34598421 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
34598359 GGCTCAAAAT
*
34598369 CTTAGACTAGGATTGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
*
34598395 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCATATG
34598421 C
1 C
34598422 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:34598765 original size:26 final size:26
Alignment explanation
Indices: 34598729--34598781 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34598719 CTGATCCAAT
*
34598729 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
*
34598755 CTTAGACTGGGGATCAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
34598781 C
1 C
34598782 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCGTATG
Found at i:34598896 original size:183 final size:183
Alignment explanation
Indices: 34598587--34598938 Score: 463
Period size: 183 Copynumber: 1.9 Consensus size: 183
34598577 ACATGGAATG
*
34598587 AACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTACGGGCGCTCAGTCGATCAGAGAGGAAG
1 AACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGTCGATCAGAGAGGAAG
* * *
34598652 GATGCGCAAGCCGAGGATCGACTCGATCCCCCTGTGTGCTACCCATCCTACTGCCGCAACCCTTG
66 AATGCGCAAGCCGAGGATCGACCCGATCCCCCTGCGTGCTACCCATCCTACTGCCGCAACCCTTG
34598717 ATCTGATCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATC
131 ATCTGATCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATC
* * * * * * *
34598770 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTTGGTCGGAGAGGCAG
1 AACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGTCGATCAGAGAGGAAG
* * * * * ** * * *
34598835 AATGCGTAAGCTGGGGATTGGCCC-AGTCCCCCTGCGTGCTGTCGATCCTGCTGCTGCAACCCTT
66 AATGCGCAAGCCGAGGATCGACCCGA-TCCCCCTGCGTGCTACCCATCCTACTGCCGCAACCCTT
* ** *
34598899 GGTCTGATCTGATCTTAGACTGGGAATGAATTCCGTATGC
130 GATCTGATCCAATCTTAGACTGGGAATGAACTCCGTATGC
34598939 ATAAGTCAAC
Statistics
Matches: 143, Mismatches: 25, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
182 1 0.01
183 142 0.99
ACGTcount: A:0.22, C:0.29, G:0.27, T:0.21
Consensus pattern (183 bp):
AACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGTCGATCAGAGAGGAAG
AATGCGCAAGCCGAGGATCGACCCGATCCCCCTGCGTGCTACCCATCCTACTGCCGCAACCCTTG
ATCTGATCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATC
Found at i:34599800 original size:26 final size:26
Alignment explanation
Indices: 34599771--34599823 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
34599761 CCGATCTGAT
* *
34599771 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACGGGGAATGAACTCCATATG
*
34599797 CTTAGACGGGGGATGAACTCCATATG
1 CTTAGACGGGGAATGAACTCCATATG
34599823 C
1 C
34599824 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (26 bp):
CTTAGACGGGGAATGAACTCCATATG
Found at i:34599890 original size:184 final size:185
Alignment explanation
Indices: 34599428--34599895 Score: 586
Period size: 184 Copynumber: 2.5 Consensus size: 185
34599418 TCCTGCTAGG
* * **
34599428 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCATGCACGTGCTCAG
1 GCTTAGACAGGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAG
* * * * *
34599493 CCGACCGGAGAGGCAGAATGCGTAAGCCGGAGAT-TGCCCGGTCCCCCCCTGCATGCTGCCGATC
66 CCGACCGGAGAGGCAGAATGCGTAAGTCGGGGATCGGCCCGATCCCCCCCTGCATGCTACCGATC
*
34599557 CTACTGGCACAACCCTCGATCCAGTCCAATCTTAGATTGGGAATGAACTCCGTAT
131 CTACTGGCACAACCCTCGATCCAGTCCAATCTTAGACTGGGAATGAACTCCGTAT
* * *
34599612 GCTTAGACATGGAATGAACTCTGTATGCCTCAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACAGGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAG
* * * *
34599677 CC-AGCCGGAGAGGCAGAATGCGTAAGTCGGGGATCGGCTCGAT-CCCCCTTGCGTGCTATCGAT
66 CCGA-CCGGAGAGGCAGAATGCGTAAGTCGGGGATCGGCCCGATCCCCCCCTGCATGCTACCGAT
* * * **
34599740 CCTGCT-GCTGCAACCCTCGGTCC-GATCTGATCTTAGACTGGGAATGAACTCCGTAT
130 CCTACTGGC-ACAACCCTCGATCCAG-TCCAATCTTAGACTGGGAATGAACTCCGTAT
* * ** * *
34599796 GCTTAGACGGGGGATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACAGGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAG
* * * *
34599861 CCGACCAGAGAGGCAGCATACGCAAGTCGGGGATC
66 CCGACCGGAGAGGCAGAATGCGTAAGTCGGGGATC
34599896 AAATGGGTGG
Statistics
Matches: 246, Mismatches: 33, Indels: 10
0.85 0.11 0.03
Matches are distributed among these distances:
183 4 0.02
184 236 0.96
185 6 0.02
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.19
Consensus pattern (185 bp):
GCTTAGACAGGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAG
CCGACCGGAGAGGCAGAATGCGTAAGTCGGGGATCGGCCCGATCCCCCCCTGCATGCTACCGATC
CTACTGGCACAACCCTCGATCCAGTCCAATCTTAGACTGGGAATGAACTCCGTAT
Found at i:34600421 original size:11 final size:11
Alignment explanation
Indices: 34600405--34600429 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
34600395 TAGGCTCTCC
34600405 GGCGATGCTCT
1 GGCGATGCTCT
34600416 GGCGATGCTCT
1 GGCGATGCTCT
34600427 GGC
1 GGC
34600430 AATGGTACCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.08, C:0.28, G:0.40, T:0.24
Consensus pattern (11 bp):
GGCGATGCTCT
Found at i:34600541 original size:26 final size:26
Alignment explanation
Indices: 34600503--34600554 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34600493 GGCTCAAAAT
34600503 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
34600529 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
34600555 GCTAAGCCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34601030 original size:158 final size:157
Alignment explanation
Indices: 34600529--34601030 Score: 526
Period size: 158 Copynumber: 3.2 Consensus size: 157
34600519 ACTCCGTATG
* * *
34600529 CTTAGACATGGAATGAACTCCGTATGGCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * **
34600594 CGATCGGAGAGGTAGAATGCACAAGCCGAGGATCGACCCAGTCCCCCCTACGTGCTGTTGATCCT
66 CGACCGGAGAGGTAGAATGCACAAGCAG-GGATCGACCCGGTCCCCCTTACGTGCTGCCGATCCT
* * *
34600659 GCTGCTGCACCCCTCGGTCTG-GTCTGAT
130 GCTGCCGCAACCCTCGGTCTGATTC-GAT
* * * *
34600687 CTTAGAC-TAGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTGCGGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * * * * * * **
34600751 CTGGCCGAAGAGGCATAATGCTCAAGCCAGGGATCAACCCGATCGCCCTTTGCATGCTGCCGGGC
65 CCGACCGGAGAGGTAGAATGCACAAG-CAGGGATCGACCCGGTC-CCCCTTACGTGCTGCCGATC
* * * *
34600816 CCGCTGCCACAACCCTCGATCTGATT-GAAA
128 CTGCTGCCGCAACCCTCGGTCTGATTCG-AT
* * * * *
34600846 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCAACGAAACGGGCGTGCGGGTGCTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * *
34600911 CGACCGGAGAGGTAGAATGCGCAAGCTAGGGATTGGCTCGGTCCCCCTTACGTGCTGCCGATCCT
66 CGACCGGAGAGGTAGAATGCACAAGC-AGGGATCGACCCGGTCCCCCTTACGTGCTGCCGATCCT
34600976 GCTGCCGCAACCCTCGGTCTGATTCGAT
130 GCTGCCGCAACCCTCGGTCTGATTCGAT
34601004 CTTAGAC-TGAGAATGAACTCCGTATGC
1 CTTAGACATG-GAATGAACTCCGTATGC
34601031 TTAAACTGGG
Statistics
Matches: 272, Mismatches: 63, Indels: 18
0.77 0.18 0.05
Matches are distributed among these distances:
157 3 0.01
158 149 0.55
159 118 0.43
160 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGACCGGAGAGGTAGAATGCACAAGCAGGGATCGACCCGGTCCCCCTTACGTGCTGCCGATCCTG
CTGCCGCAACCCTCGGTCTGATTCGAT
Found at i:34601781 original size:26 final size:25
Alignment explanation
Indices: 34601738--34601789 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
34601728 GGCTCAAAAT
*
34601738 CTTAGACTGGGATGAACTCCGTATG
1 CTTAGACTGGAATGAACTCCGTATG
34601763 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGAC-TGGAATGAACTCCGTATG
34601789 C
1 C
34601790 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTCCGTATG
Found at i:34601957 original size:26 final size:26
Alignment explanation
Indices: 34601921--34601973 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34601911 CTGGTCTGAT
34601921 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
34601947 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
34601973 C
1 C
34601974 ATAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:34608146 original size:24 final size:24
Alignment explanation
Indices: 34608119--34608164 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
34608109 CTGATAGAAA
*
34608119 TGAGTCAGGATATATATACTACAG
1 TGAGTCAAGATATATATACTACAG
34608143 TGAGTCAAGATATATATACTAC
1 TGAGTCAAGATATATATACTAC
34608165 TGATGAGTAG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.39, C:0.13, G:0.17, T:0.30
Consensus pattern (24 bp):
TGAGTCAAGATATATATACTACAG
Found at i:34609913 original size:26 final size:26
Alignment explanation
Indices: 34609861--34609913 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
34609851 GGCTCAAAAT
*
34609861 CTTAGACTAGGAATGAACTCTGCATG
1 CTTAGACTAGGAATGAACTCCGCATG
*
34609887 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGCATG
34609913 C
1 C
34609914 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGCATG
Found at i:34610912 original size:196 final size:196
Alignment explanation
Indices: 34610530--34610967 Score: 508
Period size: 196 Copynumber: 2.2 Consensus size: 196
34610520 TCCGGCTAGG
* * *
34610530 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACTCACGAAACGAGCGTACGGGCACTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCCTACGAGCACTCAA
* * *
34610595 CCAGCCGGAGAGGCAAAATGCAGAAGTCGAGGATCGGCCCAGTCCGAACCTGCGTTCTACCGATC
66 CCAGCCGGAGAGGCAAAATGCAGAAGCCGAGGATCGGCCCAGTCCGAACCTACGTGCTACCGATC
* * * * * *
34610660 CTGCTGCTGGTCCTGCTACCGCAACCCTCGTTCCGGTCCGATCTTTGATTGGAATGAACTCCGTA
131 CTGCTGCTGGTCCTACTACCGCAACCCTCGGTCCGGTCCGAGCTTAGATAGGAATGAACCCCGTA
34610725 T
196 T
* * * *
34610726 GCTTAGACATGGAATGAACTTCGTAAGCCTAAGCCAACCCATGAAACGAGCCTACGAGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCCTACGAGCACTCAA
* * * * ** ***
34610791 CCAGCCGGAGAGGCAGAATG-TGCAAGCC-AGGGA-CTGGCTCGGTCC-CTCCTACGTGCTGTTG
66 CCAGCCGGAGAGGCAAAATGCAG-AAGCCGA-GGATC-GGCCCAGTCCGAACCTACGTGCTACCG
* * * * *
34610852 ATCTTGCTGCTGGTCCTATTGCCGTAACCCTCGGTCTGGTCTC-AGCTTAGACTAGGAATGAACC
128 ATCCTGCTGCTGGTCCTACTACCGCAACCCTCGGTCCGGTC-CGAGCTTAGA-TAGGAATGAACC
34610916 CCGTAT
191 CCGTAT
* *
34610922 GCTTAGACATGGAATGAACTCCGTATGCATAAGTCAACCCACGAAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA
34610968 TGAGTGTGCG
Statistics
Matches: 202, Mismatches: 35, Indels: 10
0.82 0.14 0.04
Matches are distributed among these distances:
195 52 0.26
196 150 0.74
ACGTcount: A:0.25, C:0.29, G:0.25, T:0.21
Consensus pattern (196 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCCTACGAGCACTCAA
CCAGCCGGAGAGGCAAAATGCAGAAGCCGAGGATCGGCCCAGTCCGAACCTACGTGCTACCGATC
CTGCTGCTGGTCCTACTACCGCAACCCTCGGTCCGGTCCGAGCTTAGATAGGAATGAACCCCGTA
T
Found at i:34610935 original size:26 final size:26
Alignment explanation
Indices: 34610896--34610949 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
34610886 TCTGGTCTCA
34610896 GCTTAGACTAGGAATGAACCCCGTAT
1 GCTTAGACTAGGAATGAACCCCGTAT
*
34610922 GCTTAGAC-ATGGAATGAACTCCGTAT
1 GCTTAGACTA-GGAATGAACCCCGTAT
34610948 GC
1 GC
34610950 ATAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.30, C:0.22, G:0.24, T:0.24
Consensus pattern (26 bp):
GCTTAGACTAGGAATGAACCCCGTAT
Found at i:34611435 original size:159 final size:158
Alignment explanation
Indices: 34610922--34611510 Score: 481
Period size: 159 Copynumber: 3.7 Consensus size: 158
34610912 AACCCCGTAT
* * * * *
34610922 GCTTAGACATGGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGTGTGCGGGTGCTGAG
1 GCTTAGACATGGAATGAACTCCCTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTGAG
* * * * * * * * * * *
34610987 CCGACCAAAGAGTCATAGTGCGCAAGCTGGGGTTCAGCCCGGTCCCCCTCTGCGTCCTGCCAGTC
66 CCGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGATCCCTCTCTGCGTACTGTCGGTC
* *
34611052 CCACTGCCACAACCCTCGGTCTGGCTGGG
131 CCACAGCCACAACCCTC-GTCAGGCTGGG
* * * * ** *
34611081 GCTTAGACATGGAATGAACTCCCTATGCATAAGCCAACCCACAAAACGGGCGAGTGACCAC-GCA
1 GCTTAGACATGGAATGAACTCCCTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTG-A
* ** * * * * * * * * * * *
34611145 GTCGGTCGGAGAGGCAGAATGCACAAGTCGAGGATCGGCTCGATCCC-CCCTACGTGCTATCGAT
65 GCCGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGATCCCTCTCTGCGTACTGTCGGT
* * * * * *
34611209 CCTATTATCGA-AACCCTCGTACAGTCT-GA
130 CCCA-CAGCCACAACCCTCGT-CAGGCTGGG
* * * * * *
34611238 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGTGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCCTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTGA
* * * *
34611302 GCCAACCGAAGAGGCATAATGCGCAAGCCAGGGATC-GACCCGATCCCTCTCTGCATACTGTCGG
65 GCCGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCAG-CCCGATCCCTCTCTGCGTACTGTCGG
* *
34611366 TCCCGCAGCCACAACCCTCGATCCGGCTGGG
129 TCCCACAGCCACAACCCTCG-TCAGGCTGGG
* * * * *
34611397 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGAGTGCGGGCGCTAAG
1 GCTTAGACATGGAATGAACTCCCTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTGAG
* *
34611462 CCGACC-AGAGAGGCAGAATGAGTAAGCCGGGGATCAGCCCGATCCCTCT
66 CCGACCGA-AGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGATCCCTCT
34611511 TACATGCTGT
Statistics
Matches: 326, Mismatches: 91, Indels: 26
0.74 0.21 0.06
Matches are distributed among these distances:
156 2 0.01
157 89 0.27
158 52 0.16
159 181 0.56
160 2 0.01
ACGTcount: A:0.25, C:0.30, G:0.27, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCCTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTGAG
CCGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGATCCCTCTCTGCGTACTGTCGGTC
CCACAGCCACAACCCTCGTCAGGCTGGG
Found at i:34611507 original size:316 final size:317
Alignment explanation
Indices: 34610923--34611595 Score: 788
Period size: 316 Copynumber: 2.1 Consensus size: 317
34610913 ACCCCGTATG
* * *
34610923 CTTAGACAT-GGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGTGTGCGGGTGCTGAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAG
* * * ** * * * *
34610987 CCGACCAAAGAGTCATAGTGCGCAAGCTGGGGTTCAGCCCGGTCCCCCTCTGCGTCCTGCCAGTC
65 CCAACCAAAGAGGCATAATGCGCAAGCCAGGGATCAGCCCGATCCCCCTCTGCATACTGCCAGTC
* * *
34611052 CCACTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCATAAGCCA
130 CCACAGCCACAACCCTCGATCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCATAAGCCA
* ** * * *
34611117 ACCCACAAAACGGGCGAGTGACCACGCAGTCGGTCGGAGAGGCAGAATGCACAAGTCGAGGATCG
195 ACCCACAAAACGGGCGAGTGACCACGCAGCCGACCAGAGAGGCAGAATGCACAAGCCGAGGATCA
* * *
34611182 GCTCGATCCCCCCTACGTGCTATCGATCCTATTATCGAAACCCTCG-TACAG-TCTGAT
260 GCCCGATCCCCCCTACATGCTATCGATCCTACTATCGAAACCCTCGAT-CAGATCTGAT
* * *
34611239 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGTGGGCGCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAGC
* * * *
34611304 CAACCGAAGAGGCATAATGCGCAAGCCAGGGATC-GACCCGATCCCTCTCTGCATACTGTCGGTC
66 CAACCAAAGAGGCATAATGCGCAAGCCAGGGATCAG-CCCGATCCCCCTCTGCATACTGCCAGTC
* *
34611368 CCGCAGCCACAACCCTCGATCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
130 CCACAGCCACAACCCTCGATCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCATAAGCCA
** ** * *
34611433 ACCCATGAAAC-GG-GAGTG-CGGGCGCTAAGCCGACCAGAGAGGCAGAATG-AGTAAGCCGGGG
195 ACCCACAAAACGGGCGAGTGAC-CACGC--AGCCGACCAGAGAGGCAGAATGCA-CAAGCCGAGG
* * * * * * * *
34611494 ATCAGCCCGATCCCTCTTACATGCTGTCGATCCTGCTATTGCAACCCTTGATCCGATCTGAT
256 ATCAGCCCGATCCCCCCTACATGCTATCGATCCTACTATCGAAACCCTCGATCAGATCTGAT
*
34611556 CTTAGATTGGGAATGAAC-CCGTATGCATAAGTCAACCCAC
1 CTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCAC
34611596 ANNNNNNNNN
Statistics
Matches: 299, Mismatches: 50, Indels: 16
0.82 0.14 0.04
Matches are distributed among these distances:
313 1 0.00
314 8 0.03
315 5 0.02
316 261 0.87
317 24 0.08
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (317 bp):
CTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAGC
CAACCAAAGAGGCATAATGCGCAAGCCAGGGATCAGCCCGATCCCCCTCTGCATACTGCCAGTCC
CACAGCCACAACCCTCGATCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCATAAGCCAA
CCCACAAAACGGGCGAGTGACCACGCAGCCGACCAGAGAGGCAGAATGCACAAGCCGAGGATCAG
CCCGATCCCCCCTACATGCTATCGATCCTACTATCGAAACCCTCGATCAGATCTGAT
Found at i:34613404 original size:158 final size:157
Alignment explanation
Indices: 34613024--34613479 Score: 451
Period size: 157 Copynumber: 2.9 Consensus size: 157
34613014 TGCCAGTCCA
*
34613024 GCTGCCACAACCCTCGATCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAACCAAC
1 GCTGCCACAACCCTCGATCTGGCTGGGGCTTAGATATGGAATGAACTCCCTATGCCTAAACCAAC
* * * * * * * **
34613089 CCACGAAACGGGTGAGCGGCCACCCAG-CAGATCAAAGAGGGAGAATGCGTAAGCCGGGGATC-A
66 CCATGAAAC-GGTGTGCGG-CACTCAGCCAG-CCGAAGAGGCAGAATGCGCAAGCTAGGGATCGA
* *
34613152 GCCCGATCCCCC-CTGCATGCTACCAATCAT
128 -CCCGATCCCCCTCCGCATGCTACCAATCAC
* * * * ** * **
34613182 ACTGTCGA-AACCCTC-ATACAGTCT-GATCTTAGAT-TGGGAATGAACTCCGTATGCCTAAGTC
1 GCTG-CCACAACCCTCGAT-CTGGCTGGGGCTTAGATAT-GGAATGAACTCCCTATGCCTAAACC
* * * *
34613243 AACCCATGAACCGAGTGTGCGGCGCTGAGCCAGCCGAAGAGGCATAATGCGCAAGCTAGGGATCG
63 AACCCATGAAACG-GTGTGCGGCACTCAGCCAGCCGAAGAGGCAGAATGCGCAAGCTAGGGATCG
* * *
34613308 ACCCGATCCCCCTCCGCGTGCTACCGATCCC
127 ACCCGATCCCCCTCCGCATGCTACCAATCAC
34613339 GCTGCCACAACCCTCGATCTGGCTGGGGCTTAGATATGGAATGAACTCCCTATGCCTAAACCAAC
1 GCTGCCACAACCCTCGATCTGGCTGGGGCTTAGATATGGAATGAACTCCCTATGCCTAAACCAAC
* * * * * *
34613404 CCATGAAACGGACGTGCGGGCTCTCAGCCGGCCGGAGAGGCAGAATGCGCAAG-TCGAGGATCGG
66 CCATGAAACGG-TGTGC-GGCACTCAGCCAGCCGAAGAGGCAGAATGCGCAAGCTAG-GGATCGA
34613468 CCCGATCCCCCT
128 CCCGATCCCCCT
34613480 TATGTGCTGT
Statistics
Matches: 238, Mismatches: 46, Indels: 27
0.77 0.15 0.09
Matches are distributed among these distances:
156 43 0.18
157 80 0.34
158 64 0.27
159 51 0.21
ACGTcount: A:0.25, C:0.32, G:0.26, T:0.17
Consensus pattern (157 bp):
GCTGCCACAACCCTCGATCTGGCTGGGGCTTAGATATGGAATGAACTCCCTATGCCTAAACCAAC
CCATGAAACGGTGTGCGGCACTCAGCCAGCCGAAGAGGCAGAATGCGCAAGCTAGGGATCGACCC
GATCCCCCTCCGCATGCTACCAATCAC
Found at i:34613511 original size:315 final size:314
Alignment explanation
Indices: 34612735--34613551 Score: 822
Period size: 315 Copynumber: 2.6 Consensus size: 314
34612725 CTTAGTTTGT
* * **
34612735 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAACGTGCGAGTGCT-T-AG
1 TTAGACATGGAATGAACTCCCTATGCCTAAACCAACCCACGAAACGGACGTGCG-G-GCTCTCAG
* * * *
34612798 CCGGCCGGAGAGGCAGAATGCGTAAGTCGGAGACCGGCCTGAAGCCACCCTACGTGCAGTCGATC
64 CCGGCCGGAGAGGCAGAATGCGTAAGTCGG-GATCGGCCCG-ATCC-CCCTACGTGCTGTCGATC
* * * * * * * *
34612863 CTGATGCCACAACCCCCGGTCCGGTCTGATCTTAGGCTAGGAATAAACTCCGTATGCCTAAGTCA
126 ATGCTGTCACAACCCTCGATACAGTCTGATCTTAGACTAGGAATAAACTCCGTATGCCTAAGTCA
* ** * * * *
34612928 ACCCACGAAATGAGCGTATGGGCGCTGAGCTGGCCGGAGAGGCATAATGTGTAAGCCGAGGATCG
191 ACCCACGAAACGA-CGTATGGGCGCTGAGCCAGCCGAAGAGGCATAATGCGCAAGCAGAGGATCG
*** * * * *
34612993 GTTCGATCCTCTTCTGCATGCTGCCAGTCCAGCTGCCACAACCCTCGATCTGGCTGGGGC
255 ACCCGATCCCCCTCCGCATGCTACCAGTCCAGCTGCCACAACCCTCGATCTGGCTGGGGC
** * * * * *
34613053 TTAGACATGGAATGAACTCCCTATGCCTAAACCAACCCACGAAACGGGTGAGCGGCCACCCAGCA
1 TTAGACATGGAATGAACTCCCTATGCCTAAACCAACCCACGAAACGGACGTGCGGGCTCTCAGCC
** ** * * * * * ** * *
34613118 GATCAAAGAGGGAGAATGCGTAAGCCGGGGATCAGCCCGATCCCCCCTGCATGCTACCAATCATA
66 GGCCGGAGAGGCAGAATGCGTAAGTC-GGGATCGGCCCGAT-CCCCCTACGTGCTGTCGATCATG
* * *
34613183 CTGTCGA-AACCCTC-ATACAGTCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAAC
129 CTGTC-ACAACCCTCGATACAGTCTGATCTTAGACTAGGAATAAACTCCGTATGCCTAAGTCAAC
* * *
34613246 CCATGAACCGA-GTGTGCGGCGCTGAGCCAGCCGAAGAGGCATAATGCGCAAGCTAG-GGATCGA
193 CCACGAAACGACGTATG-GGCGCTGAGCCAGCCGAAGAGGCATAATGCGCAAGC-AGAGGATCGA
* *
34613309 CCCGATCCCCCTCCGCGTGCTACC-GATCCCGCTGCCACAACCCTCGATCTGGCTGGGGC
256 CCCGATCCCCCTCCGCATGCTACCAG-TCCAGCTGCCACAACCCTCGATCTGGCTGGGGC
* *
34613368 TTAGATATGGAATGAACTCCCTATGCCTAAACCAACCCATGAAACGGACGTGCGGGCTCTCAGCC
1 TTAGACATGGAATGAACTCCCTATGCCTAAACCAACCCACGAAACGGACGTGCGGGCTCTCAGCC
* * *
34613433 GGCCGGAGAGGCAGAATGCGCAAGTCGAGGATCGGCCCGATCCCCCTTATGTGCTGTCGATCTTG
66 GGCCGGAGAGGCAGAATGCGTAAGTCG-GGATCGGCCCGATCCCCC-TACGTGCTGTCGATCATG
* * * * * *
34613498 CTGTCACAACCCTCGGTCCGGT-TCGATCTTAGACTGGGTATAAACTTCGTATGC
129 CTGTCACAACCCTCGATACAGTCT-GATCTTAGACTAGGAATAAACTCCGTATGC
34613552 TTATATTGGG
Statistics
Matches: 396, Mismatches: 90, Indels: 28
0.77 0.18 0.05
Matches are distributed among these distances:
314 12 0.03
315 196 0.49
316 82 0.21
317 24 0.06
318 80 0.20
319 2 0.01
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (314 bp):
TTAGACATGGAATGAACTCCCTATGCCTAAACCAACCCACGAAACGGACGTGCGGGCTCTCAGCC
GGCCGGAGAGGCAGAATGCGTAAGTCGGGATCGGCCCGATCCCCCTACGTGCTGTCGATCATGCT
GTCACAACCCTCGATACAGTCTGATCTTAGACTAGGAATAAACTCCGTATGCCTAAGTCAACCCA
CGAAACGACGTATGGGCGCTGAGCCAGCCGAAGAGGCATAATGCGCAAGCAGAGGATCGACCCGA
TCCCCCTCCGCATGCTACCAGTCCAGCTGCCACAACCCTCGATCTGGCTGGGGC
Found at i:34613554 original size:26 final size:26
Alignment explanation
Indices: 34613525--34613577 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
34613515 CCGGTTCGAT
*
34613525 CTTAGACTGGGTATAAACTTCGTATG
1 CTTAGACTGGGGATAAACTTCGTATG
* * *
34613551 CTTATATTGGGGATGAACTTCGTATG
1 CTTAGACTGGGGATAAACTTCGTATG
34613577 C
1 C
34613578 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.36
Consensus pattern (26 bp):
CTTAGACTGGGGATAAACTTCGTATG
Found at i:34614295 original size:26 final size:26
Alignment explanation
Indices: 34614257--34614309 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34614247 GGCTCAAAAT
34614257 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
34614283 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
34614309 C
1 C
34614310 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:34614849 original size:158 final size:156
Alignment explanation
Indices: 34614283--34614852 Score: 428
Period size: 158 Copynumber: 3.6 Consensus size: 156
34614273 ACTCCATATG
* * * * *
34614283 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGTGCGGGCCCCCAGC
1 CTTAGAC-TGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAA-GAGCGTGCGGGCGCTCAGC
* * * * ** * * * ** * ***
34614348 CAGCCGGAGAGGAAGAATGTGCAAGTCAAGGATTGGCCCGGT-CCGCAATGCATGCTGTTGATCC
64 CGGCC-GAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTCTGCGTGCTACCGATCC
* * *** * *
34614412 TGCTACCGCAACCCTTGGTTCGGTCTGAT
128 CGCTACCACAACCCTCAATCCGATCTGAT
* * * * *
34614441 CTTAGACTAGGAATGAACACCGTATGCCTAATTCAACCCATGAAACGAGCGTACGGGCACTAAGC
1 CTTAGACT-GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAA-GAGCGTGCGGGCGCTCAGC
* * * * * * *
34614506 CGGCCGAAGGGGCATAATGTGCAAGCCGGGGATCGGCTCGGTCCCCCTCTGCGTGCTGCCGGTCC
64 CGGCCG-AGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTCTGCGTGCTACCGATCC
* * **
34614571 CGCTACCACAACCCTCGATCTGA-CTGGGG
128 CGCTACCACAACCCTCAATCCGATCT-GAT
* * * * * *
34614600 CTTAGACATGGAATGAACTCCCTATGCTTAAGCCAACCCACGAAACAGACGTGCGGGCGCTCAAC
1 CTTAGAC-TGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAAGAG-CGTGCGGGCGCTCAGC
* * ** *
34614665 CGGCTGGAGAGGTAGAATGCATAAGCCGGGGATCGACCCGGTCCCCC-CTGCGTGCTATCGATCC
64 CGGC-CGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTCTGCGTGCTACCGATCC
* *
34614729 TGCTATCACAACCCTCAATCCGATCTGAT
128 CGCTACCACAACCCTCAATCCGATCTGAT
** * *
34614758 CTTAGACTGGGAATGAACTTTGTATCCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGTTCAGC
1 CTTAGACT-GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAA-GAGCGTGCGGGCGCTCAGC
* *
34614823 CGACCAGAGAGGCAGGAA-GCGGAAGCCGGG
64 CGGCC-GAGAGGCA-GAATGCGCAAGCCGGG
34614853 ATCAAACGGG
Statistics
Matches: 322, Mismatches: 78, Indels: 24
0.76 0.18 0.06
Matches are distributed among these distances:
157 3 0.01
158 193 0.60
159 124 0.39
160 2 0.01
ACGTcount: A:0.25, C:0.29, G:0.28, T:0.18
Consensus pattern (156 bp):
CTTAGACTGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAAGAGCGTGCGGGCGCTCAGCCG
GCCGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTCTGCGTGCTACCGATCCCGC
TACCACAACCCTCAATCCGATCTGAT
Found at i:34615491 original size:26 final size:26
Alignment explanation
Indices: 34615453--34615505 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34615443 GGCTCAAAAT
34615453 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
34615479 CTTAGACAT-GGAATGCACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
34615505 C
1 C
34615506 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34615858 original size:20 final size:20
Alignment explanation
Indices: 34615794--34615859 Score: 69
Period size: 20 Copynumber: 3.3 Consensus size: 20
34615784 ATCCGGTTGT
* *
34615794 CGATCCCCCCTATGTGCTGT
1 CGATCCCCCCTACGTGCTGC
* *
34615814 CGATCCCCCCTACGTGTTAC
1 CGATCCCCCCTACGTGCTGC
* **
34615834 TGATCCCTTCTACGTGCTGC
1 CGATCCCCCCTACGTGCTGC
34615854 CGATCC
1 CGATCC
34615860 TGCTGCCGAT
Statistics
Matches: 36, Mismatches: 10, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.12, C:0.41, G:0.18, T:0.29
Consensus pattern (20 bp):
CGATCCCCCCTACGTGCTGC
Found at i:34615865 original size:12 final size:12
Alignment explanation
Indices: 34615848--34615879 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
34615838 CCCTTCTACG
34615848 TGCTGCCGATCC
1 TGCTGCCGATCC
34615860 TGCTGCCGATCC
1 TGCTGCCGATCC
34615872 TGCTGCCG
1 TGCTGCCG
34615880 TAACCCTCGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.06, C:0.41, G:0.28, T:0.25
Consensus pattern (12 bp):
TGCTGCCGATCC
Found at i:34616288 original size:26 final size:26
Alignment explanation
Indices: 34616244--34616296 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
34616234 CCAGTTCAAT
* *
34616244 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATAAACTCCGAATG
* *
34616270 CTTAGACTGGGGATAAACTCCGAATG
1 CTTAGACTAGGAATAAACTCCGAATG
34616296 C
1 C
34616297 CTAAGTTAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTAGGAATAAACTCCGAATG
Found at i:34618932 original size:26 final size:26
Alignment explanation
Indices: 34618894--34618946 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34618884 GGCTCAAAAT
*
34618894 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
34618920 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
34618946 C
1 C
34618947 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34619446 original size:26 final size:26
Alignment explanation
Indices: 34619395--34619446 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
34619385 CCGGTTCGAT
**
34619395 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
34619421 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
34619447 GCTAAGTCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:34619806 original size:26 final size:26
Alignment explanation
Indices: 34619777--34619829 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34619767 CCGATCCGAT
*
34619777 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
*
34619803 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
34619829 C
1 C
34619830 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:34620060 original size:159 final size:157
Alignment explanation
Indices: 34619803--34620305 Score: 476
Period size: 159 Copynumber: 3.2 Consensus size: 157
34619793 ACTCCGTATG
* * * * * * ** *
34619803 CTTAGACAT-GGAATGAACTTCGTATGCCTAAGCCAAC-CAATGAAATGAACGTACGGGCATTTA
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACAC-ATGAAACGAGCCTGCAGGCGCTCA
* ** * * * *
34619866 GTCGATTGGAGAGGTAGAATGCGCAAGCCGAGGATCGGCCTGGTCCCCCCTTACGTGCTATCGAT
64 GCCGACCGGAGAGGCATAATGCGCAAGCCGGGGATCGGCC-GGT-CCCCCTTACGTGCTGTCGAT
* *
34619931 CCTGCTGCTACAACCCTCGGTCCGGTTTGAT
127 CCTGCTGCCACAACCCTCAGTCCGGTTTGAT
* *
34619962 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACACATGAAACGAGCCTGCAGGCGCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACACATGAAACGAGCCTGCAGGCGCTCAGC
* * * *
34620027 CGACCGGAGAGGCATAATGCGCAAGCCGGGGATCGACCCGATCCCCCTCTGCGTGCTGTCGGT-C
66 CGACCGGAGAGGCATAATGCGCAAGCCGGGGATCG-GCCGGTCCCCCT-TACGTGCTGTCGATCC
* ** * * **
34620091 TCGCCGCCACAACCCTCAGTGTGGCTGGGG
129 T-GCTGCCACAACCCTCAGTCCGGTTTGAT
* * * * * ** * *
34620121 CTTAGACAT-GGAATGAACTCCCTATGCCTTAGCCAGCCCATGAAACGGGTGTGCGGGTGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACACATGAAACGAGCCTGCAGGCGCTCAG
**
34620185 CCGACCGGAGAGGCATAATGCGCAAGCCGGGGATCGGTCCGGTTTCCCTTGA-GTGCTGTCGATC
65 CCGACCGGAGAGGCATAATGCGCAAGCCGGGGATCGG-CCGGTCCCCCTT-ACGTGCTGTCGATC
* * *
34620249 CTGCTACCGCAACCCTCAGTCCGGTCTGAT
128 CTGCTGCCACAACCCTCAGTCCGGTTTGAT
34620279 CTTAGACTGGGAATGAACTCCGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
34620306 TTAGACTGGG
Statistics
Matches: 276, Mismatches: 58, Indels: 21
0.78 0.16 0.06
Matches are distributed among these distances:
157 1 0.00
158 62 0.22
159 209 0.76
160 4 0.01
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.21
Consensus pattern (157 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACACATGAAACGAGCCTGCAGGCGCTCAGC
CGACCGGAGAGGCATAATGCGCAAGCCGGGGATCGGCCGGTCCCCCTTACGTGCTGTCGATCCTG
CTGCCACAACCCTCAGTCCGGTTTGAT
Found at i:34620308 original size:26 final size:26
Alignment explanation
Indices: 34620279--34620331 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
34620269 CCGGTCTGAT
34620279 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
34620305 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
34620331 C
1 C
34620332 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34621418 original size:159 final size:155
Alignment explanation
Indices: 34621026--34621490 Score: 441
Period size: 156 Copynumber: 3.0 Consensus size: 155
34621016 AACTCCGTAT
* *
34621026 GCTTAGAAATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
* * *** * **
34621091 ACGGTCGGAGAGGCAGAATAAGCAAGTCGAGGATCGGTATGGTCCCCCCTGTGTGCTGTTGATCC
66 CCGGTCGGAGAGGCAGAATTA-CAAGTCGAGGATCGG-CCCGTCCCCCCTGCGTGCTGCCGATCC
* *
34621156 TGCTGCCACAA-CCTCAGTTCAATCGA
129 TGCTGCCACAACCCTCGGTCCAATCGA
* * * * * * *
34621182 TCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGCGTACGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCA
*** ** * * *
34621246 GCCTACCAAAGAGGCATAATGTACAGGTCGAGGATCGGCCCAGTCCCCCTCTGCGTGCTGCCGGT
65 GCCGGTCGGAGAGGCAGAAT-TACAAGTCGAGGATCGGCCC-GTCCCCC-CTGCGTGCTGCCGAT
* * * *
34621311 CTTGCTGCCACAACCCTCGGTCCGACTGGG
127 CCTGCTGCCACAACCCTCGGTCC-AATCGA
* * * * *
34621341 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGTGGATGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
* * * * *
34621406 CCGGTCGGAGAGGTAGAATTTACAAG-CTGGGGTTCGGCCCGATCCCCCCTACGTGCTACCGATC
66 CCGGTCGGAGAGGCAGAA-TTACAAGTC-GAGGATCGGCCCG-TCCCCCCTGCGTGCTGCCGATC
*
34621470 CTACTGCCACAACCCTCGGTC
128 CTGCTGCCACAACCCTCGGTC
34621491 TGGTCTGATC
Statistics
Matches: 241, Mismatches: 58, Indels: 18
0.76 0.18 0.06
Matches are distributed among these distances:
155 1 0.00
156 87 0.36
157 24 0.10
158 41 0.17
159 86 0.36
160 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (155 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
CCGGTCGGAGAGGCAGAATTACAAGTCGAGGATCGGCCCGTCCCCCCTGCGTGCTGCCGATCCTG
CTGCCACAACCCTCGGTCCAATCGA
Found at i:34622155 original size:26 final size:26
Alignment explanation
Indices: 34622117--34622169 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34622107 CCGATCCGAT
34622117 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
34622143 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
34622169 C
1 C
34622170 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:34622439 original size:158 final size:158
Alignment explanation
Indices: 34622143--34622542 Score: 367
Period size: 158 Copynumber: 2.5 Consensus size: 158
34622133 ACTCCATATG
**
34622143 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCAATGAAACGAGCGTGTGGGCCCTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCAATGAAACGAGCGTGCAGGCCCTCAAC
* * * * * * *
34622208 CGACCGGAGAGGCAGAATGCACAAGTTGAAGATCGGTCCGGTCCCCTCTGCATACTGTCGATCCT
66 CGACCGAAGAGGCAGAATGCACAAGCTGAAGATCGGCCCGATCCCCTCTACAGACTGTCGATCCC
34622273 GCTACCACAGCACTCGGTTCGATTTGAT
131 GCTACCACAGCACTCGGTTCGATTTGAT
* * * * * * *
34622301 CTTAGAC-TGGGAATGAACTCTGTATGCCTAAGTCATCCCATGAAACGAGCGTGCAGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCAATGAAACGAGCGTGCAGGCCCTCAA
** * * ** * * *
34622365 CCGGTCGAAGAGGCATAATGCGCAAGCTGGCGATTGGCCCGATCCCCCTCTACGGA-TGTTGATC
65 CCGACCGAAGAGGCAGAATGCACAAGCTGAAGATCGGCCCGAT-CCCCTCTACAGACTGTCGATC
* * * * * * * **
34622429 CCGCTGCCACAACCCTCAG-TCCAGCTGGGG
129 CCGCTACCACAGCACTCGGTTCGA-TTTGAT
* * * * *
34622459 CTTAGACATGGAATGAAATCCCTATGCCTAAGCCAACCAACGAAACGGGCGTGC-GGCGCTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCAATGAAACGAGCGTGCAGGCCCTCAAC
* * *
34622523 CGACCGGATAGGCAAAATGC
66 CGACCGAAGAGGCAGAATGC
34622543 GTAAGCTGGG
Statistics
Matches: 189, Mismatches: 49, Indels: 9
0.77 0.20 0.04
Matches are distributed among these distances:
157 27 0.14
158 152 0.80
159 10 0.05
ACGTcount: A:0.26, C:0.29, G:0.26, T:0.19
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCAATGAAACGAGCGTGCAGGCCCTCAAC
CGACCGAAGAGGCAGAATGCACAAGCTGAAGATCGGCCCGATCCCCTCTACAGACTGTCGATCCC
GCTACCACAGCACTCGGTTCGATTTGAT
Found at i:34623514 original size:158 final size:157
Alignment explanation
Indices: 34623222--34624036 Score: 639
Period size: 158 Copynumber: 5.2 Consensus size: 157
34623212 ACTTCGTATG
** * *
34623222 CTTAGACAT-GGAATGAACTCCACATGCTTAAGCCAACCCATGAAACAAGCGTGCGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAG
* * * *
34623286 CCGACC-AGAGAGGCAGAATGCGTAAGCCAGGGATCAACCCGGTCCCCC-CTGCGTGCTGTCAAT
65 CCGACCGA-AGAGGCAGAATGCGCAAG-CTGGGATCGACCC-GTCCCCCTCTGCGTGCTGTCGAT
* ** * *
34623349 CCTGCTACCGTAACCCTTGGTTCGGTCCGAT
127 CCTGCTGCCACAACCCTCGGTCCGGTCCGAT
* * * ** *
34623380 CTTAGACTGGGAATGAACTCCGTATGCATAAGTCAAGCCATGAAATGAGCGTGCGGGCGCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAGC
* * * * * * * * *
34623445 TGACCGAAGAGGTATAATGGGCAAGCTGGGATCGACCCAGTCCCCCTCTGCGTGATATTGGTCCC
66 CGACCGAAGAGGCAGAATGCGCAAGCTGGGATCGACCC-GTCCCCCTCTGCGTGCTGTCGATCCT
* * * *
34623510 GCTACCACAACCCTTGGTCCGG-CAGGGGT
130 GCTGCCACAACCCTCGGTCCGGTC--CGAT
* * * ** * *
34623539 -TTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTACGGGCACTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAG
* * * * ** *
34623602 CCAACCGCAGAGGCAAAATGCACAAGCTGGGGATCGACCCGATCCCCC-CTGTATGCTGCCGATC
65 CCGACCGAAGAGGCAGAATGCGCAAGCT-GGGATCGACCCG-TCCCCCTCTGCGTGCTGTCGATC
* *
34623666 CTGCTGCCGCAACCCTCGGTCCAGTCCGAT
128 CTGCTGCCACAACCCTCGGTCCGGTCCGAT
* * * *
34623696 CTTAGACTGGG-ATGAATTCCGTATGCATAAGTCAACCCACGAAACAAGCG-GACGGGCACTGAG
1 CTTAGACTGGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACAAGCGTG-CGGGCGCTCAG
** * * * ** * *
34623759 CCGGTCGAAGAGGCATAATGCGCAAGCCGGGATCGGCTTAGT-CCCCTCTGCGTGCTGTTGGTCC
65 CCGACCGAAGAGGCAGAATGCGCAAGCTGGGATCGAC-CCGTCCCCCTCTGCGTGCTGTCGATCC
* * * * **
34623823 CGCTGCCACAACCCTCGGTTC-GACTGGGG
129 TGCTGCCACAACCCTCGGTCCGGTC-CGAT
* * * * * * * * *
34623852 CTTAAACTTGGAATGAACTCCCTATGCCTAAGCCAACCTACGAAATAGGCGTGCGGGTGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAGC
* * * * * *
34623917 TGACCGAAAAGGTAGAATGCGTAAGCCGGGGATC-AGCCCGAT-CCTCTCTGCGTGCTGTCGATC
66 CGACCGAAGAGGCAGAATGCGCAAG-CTGGGATCGA-CCCG-TCCCCCTCTGCGTGCTGTCGATC
* *
34623980 CTACTGCCACAACCCTCGGTCCGGTCTGAT
128 CTGCTGCCACAACCCTCGGTCCGGTCCGAT
34624010 CTTAGACTGGGAATGAACTCCGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
34624037 TTAGACTGGG
Statistics
Matches: 509, Mismatches: 127, Indels: 42
0.75 0.19 0.06
Matches are distributed among these distances:
155 6 0.01
156 49 0.10
157 146 0.29
158 284 0.56
159 24 0.05
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (157 bp):
CTTAGACTGGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAGC
CGACCGAAGAGGCAGAATGCGCAAGCTGGGATCGACCCGTCCCCCTCTGCGTGCTGTCGATCCTG
CTGCCACAACCCTCGGTCCGGTCCGAT
Found at i:34623888 original size:314 final size:314
Alignment explanation
Indices: 34623221--34624036 Score: 992
Period size: 314 Copynumber: 2.6 Consensus size: 314
34623211 AACTTCGTAT
* * *
34623221 GCTTAGACATGGAATGAACTCCAC-ATGCTTAAGCCAACCCATGAAACAAGCGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCC-CTATGCCTAAGCCAACCCACGAAACAGGCGTGCGGGCGCTCA
* * *
34623285 GCCGACCAGAGAGGCAGAATGCGTAAGCCAGGGATCAACCCGGTCCCCCCTGCGTGCTGTCAATC
65 GCCGACC-GAGAGGCAGAATGCGTAAGCCGGGGATC-ACCCGATCCCCCCTGCGTGCTGTCGATC
* * * *
34623350 CTGCTACCGTAACCCTTGGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCA
128 CTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCA
* * ** * * * * *
34623415 AGCCATGAAATGAGCGTGCGGGCGCTGAGCTGACCGAAGAGGTATAATGGGCAAGCTGGGATCGA
193 ACCCACGAAACAAGCGTGCGGGCACTGAGCCGACCGAAGAGGCATAATGCGCAAGCCGGGATCGA
* *
34623480 CCCAGTCCCCCTCTGCGTGATATTGGTCCCGCTACCACAACCCTTGGTCCGGCAGGG
258 CCCAGTCCCCCTCTGCGTGATATTGGTCCCGCTACCACAACCCTCGGTCCGACAGGG
* * * * *
34623537 GTTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTACGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGCGTGCGGGCGCTCAG
* * ** * ** *
34623602 CCAACCGCAGAGGCAAAATGCACAAGCTGGGGATCGACCCGATCCCCCCTGTATGCTGCCGATCC
66 CCGACCG-AGAGGCAGAATGCGTAAGCCGGGGATC-ACCCGATCCCCCCTGCGTGCTGTCGATCC
* *
34623667 TGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGG-ATGAATTCCGTATGCATAAGTCAA
129 TGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAA
** *
34623731 CCCACGAAACAAGCG-GACGGGCACTGAGCCGGTCGAAGAGGCATAATGCGCAAGCCGGGATCGG
194 CCCACGAAACAAGCGTG-CGGGCACTGAGCCGACCGAAGAGGCATAATGCGCAAGCCGGGATCGA
** * * * * *
34623795 CTTAGT-CCCCTCTGCGTGCTGTTGGTCCCGCTGCCACAACCCTCGGTTCGACTGGG
258 CCCAGTCCCCCTCTGCGTGATATTGGTCCCGCTACCACAACCCTCGGTCCGACAGGG
* * * * * *
34623851 GCTTAAACTTGGAATGAACTCCCTATGCCTAAGCCAACCTACGAAATAGGCGTGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGCGTGCGGGCGCTCAG
* * * * *
34623916 CTGACCGAAAAGGTAGAATGCGTAAGCCGGGGATCAGCCCGATCCTCTCTGCGTGCTGTCGATCC
66 CCGACCG-AGAGGCAGAATGCGTAAGCCGGGGATCA-CCCGATCCCCCCTGCGTGCTGTCGATCC
* * *
34623981 TACTGCCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
129 TGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
34624037 TTAGACTGGG
Statistics
Matches: 418, Mismatches: 77, Indels: 11
0.83 0.15 0.02
Matches are distributed among these distances:
313 1 0.00
314 183 0.44
315 93 0.22
316 141 0.34
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (314 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGCGTGCGGGCGCTCAG
CCGACCGAGAGGCAGAATGCGTAAGCCGGGGATCACCCGATCCCCCCTGCGTGCTGTCGATCCTG
CTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACC
CACGAAACAAGCGTGCGGGCACTGAGCCGACCGAAGAGGCATAATGCGCAAGCCGGGATCGACCC
AGTCCCCCTCTGCGTGATATTGGTCCCGCTACCACAACCCTCGGTCCGACAGGG
Found at i:34624039 original size:26 final size:26
Alignment explanation
Indices: 34624010--34624062 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
34624000 CCGGTCTGAT
34624010 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
34624036 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
34624062 C
1 C
34624063 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34625295 original size:25 final size:26
Alignment explanation
Indices: 34625245--34625296 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
34625235 GGCTCAAAAT
*
34625245 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
34625271 CTTAGACAT-GGAAT-AACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
34625296 C
1 C
34625297 CTAAGCCGAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
25 10 0.43
26 12 0.52
27 1 0.04
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:34626058 original size:342 final size:343
Alignment explanation
Indices: 34625444--34626217 Score: 942
Period size: 342 Copynumber: 2.3 Consensus size: 343
34625434 TAGACTGGGA
* * * ** *
34625444 ATGAACTCCGTATGTACAAGTCAACCCACGAAATGAGTGTACGGGCACTGAACCGATCGAAGAGG
1 ATGAACTCCGTATGCAAAAGTCAACCCACGAAACGAGCATACGGGCACTGAACCGACCGAAGAGG
* * * * * *
34625509 CATAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTCTGCATGGTACCGATCCCGCTCCCACAAC
66 CATAATACGCAAGCCGAGGATCGACCCGGTCCCCCTCTGCATGCTACCAATCCCACTACCACAAC
** * * * *
34625574 CCTCAGTCTGGGTGGGGCTTAGACTTGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGG
131 CCTCAGTCCAGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGG
* * * *
34625639 ACGTGCGGGCGCTCAGTCGGCCTGAGAGGCAGAATGCGTAAGCCGGGGATCAGCCCGGTCCCCCT
196 ACGTGCGGGCGCTCAGTCGACCAGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCC
* * * ** *
34625704 TTCGTGCTGTCGATCCTGTTGCCG-CAACCCTCGGTCCGGTTTGATCTTAGGCTGGGAATGAACT
261 TACGTGCTGTCGATCCTGCTGCCGTC-ACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACT
*
34625768 CCATTTGCTTAGACTAGAG
325 CCATATGCTTAGACTAGAG
* * * * * *
34625787 ATGAACTTCGTATGCAAAAGTCAACCCATGAAACGAGCATAGGGGCACTGAGCTGGCCGAAGAGG
1 ATGAACTCCGTATGCAAAAGTCAACCCACGAAACGAGCATACGGGCACTGAACCGACCGAAGAGG
* ** **
34625852 CATAATACGTAAGCCGAGGATCGACCC-GTCCCCCTCTGTGTGCTGTCAATCCCACTACCACAAC
66 CATAATACGCAAGCCGAGGATCGACCCGGTCCCCCTCTGCATGCTACCAATCCCACTACCACAAC
* *
34625916 CCTCAGTCCAGCTAGGGCTTAGACATGGAATGAAGTCCCTATGCCTAAGCCAACCCACGAAATGG
131 CCTCAGTCCAGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGG
** * * * *
34625981 GTGTGCGGGCTCTCAGTCGACCAGAGAGGCAGAATGCGCAAGCCGTGGATCGGCTCGGTCCCCCC
196 ACGTGCGGGCGCTCAGTCGACCAGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCC
*
34626046 TACGTGCTGTCGATCCTGCTGCCGTCACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTC
261 TACGTGCTGTCGATCCTGCTGCCGTCACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTC
* * *
34626111 CGTATGCTTAGACTGGGG
326 CATATGCTTAGACTAGAG
** * * * **
34626129 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGTCGACC-AGAGAG
1 ATGAACTCCGTATGCAAAAGTCAACCCACGAAACGAGCATACGGGCACTGAACCGACCGA-AGAG
** * *
34626193 GCAGGATGCGCAAGCCGGGGATCGA
65 GCATAATACGCAAGCCGAGGATCGA
34626218 ACTGGTGGTA
Statistics
Matches: 361, Mismatches: 68, Indels: 5
0.83 0.16 0.01
Matches are distributed among these distances:
341 1 0.00
342 282 0.78
343 78 0.22
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.19
Consensus pattern (343 bp):
ATGAACTCCGTATGCAAAAGTCAACCCACGAAACGAGCATACGGGCACTGAACCGACCGAAGAGG
CATAATACGCAAGCCGAGGATCGACCCGGTCCCCCTCTGCATGCTACCAATCCCACTACCACAAC
CCTCAGTCCAGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGG
ACGTGCGGGCGCTCAGTCGACCAGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCC
TACGTGCTGTCGATCCTGCTGCCGTCACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTC
CATATGCTTAGACTAGAG
Found at i:34626120 original size:26 final size:26
Alignment explanation
Indices: 34626091--34626143 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
34626081 CTGATCCGAT
34626091 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
34626117 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
34626143 C
1 C
34626144 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34627186 original size:26 final size:26
Alignment explanation
Indices: 34627150--34627227 Score: 106
Period size: 26 Copynumber: 3.0 Consensus size: 26
34627140 CTGATCCGAT
34627150 CTTAGACTGGGAATAAACT-TCGTATG
1 CTTAGACTGGGAATAAACTCT-GTATG
34627176 CTTAGACTGGGAATAAACTCTGTATG
1 CTTAGACTGGGAATAAACTCTGTATG
* * *
34627202 CTTAGATTGGGGAT-AACTCTGAATG
1 CTTAGACTGGGAATAAACTCTGTATG
34627227 C
1 C
34627228 CTAAGTCAAC
Statistics
Matches: 48, Mismatches: 3, Indels: 3
0.89 0.06 0.06
Matches are distributed among these distances:
25 11 0.23
26 36 0.75
27 1 0.02
ACGTcount: A:0.29, C:0.15, G:0.24, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCTGTATG
Found at i:34628987 original size:726 final size:729
Alignment explanation
Indices: 34627694--34629003 Score: 2076
Period size: 726 Copynumber: 1.8 Consensus size: 729
34627684 CTGTTGCCAC
* *
34627694 AACCCTCGATCCGATCTGATCTTAGACTGGAAATGAACTCCATATGCTTAGACTGGGGATGAAGT
1 AACCCTCGATCCAATCTGATCTTAGACTGGAAATGAACTCCATATGCTTAGACTGGGGATGAACT
* * *
34627759 TCGTATGCCTAAGTCAACGCACGAAACGAGCGTGCGGGCACTCAGCCGACCAGAAAGGCAAGATG
66 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTCCGGGCACTCAGCCGACCAGAAAGGCAAGATG
* *
34627824 CGCAAGTCGGGGATCGAACGGGTGGTAGGTGGGTTCAAGCACATCTTCATATCTCTACCATGCCA
131 CGCAAGCCAGGGATCGAACGGGTGGTAGGTGGGTTCAAGCACATCTTCATATCTCTACCATGCCA
* *
34627889 ATGCTAATTTTATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCATGTGAAGTTTCGTGC
196 ATGCCAATTTTATGGCTGGTAAATTCATACAATGGTCCCCTAAGCCTTCATGTGAAGTTTCGTGC
* * ** *
34627954 CAAGACGACCCGTTTTTTTATTTTTCACGATGTTTGAAACTTTTTACGGTTCAGGATTTTTTAAT
261 CAAGACGACCAGTTTTTCTATTTTTCACGATGTTCAAAAATTTTTACGGTTCAGGATTTTTTAAT
* * * *
34628019 ATCTTTCTAGAAAGAGTTTTGTCCCCAAATTTGGTAGAGGTGATCCTTGTATTTTTGTTGGTATG
326 ATCTTTCTAGAAAGAGTTTTGTCCCCAAATTTGGTAAAGGTGATCCTTATATTTTTGTTCGCATG
** *
34628084 TGCAAAAATATTCAGCTAAAAACTCAAAGTGGAGAAGATTTTGTGACCATTTGAAAAAAGTGTCC
391 CACAAAAATATTCAGCTAAAAACTCAAAGTGGAGAAGATTTTGTGACCATTTGAAAAAAGAGTCC
* *
34628149 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTATTTAAGGGG
456 CCATTTCAGACACTTTAATGGCGACTGGCAGCAAACCTATAAAATCTCAAATGATATTTAAGGGG
*
34628214 GTGTGAGTTCTCAAGGTTTGATGAGGGATAGAGGGCCAATGTAAGGGCCAAGTACCAGCACCCAA
521 GTGTGAGTTCTCAAGGTTTGATGAGGGATAGAGGGCCAATATAAGGGCCAAGTACCAGCACCCAA
34628279 CCCATGAAATGAGCGTGTGAGCTCTCCGTATGCATAAACCAACCCATAAAATGAGCGTGCGGGTG
586 CCCATGAAATGAGCGTGTGAGCTCTCCGTATGCATAAACCAACCCATAAAATGAGCGTGCGGGTG
34628344 CTCAGTCGATCAGAGAGGCAGAATACGTAAATCGAGGATCGACCTAGTCCCCCTTGCATGTTACC
651 CTCAGTCGATCAGAGAGGCAGAATACGTAAATCGAGGATCGACCTAGTCCCCCTTGCATGTTACC
34628409 GATCCTGCTACCGT
716 GATCCTGCTACCGT
* * *
34628423 AACCCTCGGTCCAATCTGATCTTAGACTGGGAATGAACTCGATATGCTTAGACTGGGGATGAACT
1 AACCCTCGATCCAATCTGATCTTAGACTGGAAATGAACTCCATATGCTTAGACTGGGGATGAACT
* * * * *
34628488 CCGTATGCCTAAGTCAACCCATGAAATGAGCGTCCGGGCACTC-GTCGACCAGAGAGGCAGGATG
66 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTCCGGGCACTCAGCCGACCAGAAAGGCAAGATG
* * **
34628552 CGCAAGCCAGGGATCGAACGGGTGGTAGGTGGGTTCAGGCACATCTTCATATTTCTACTGTGCCA
131 CGCAAGCCAGGGATCGAACGGGTGGTAGGTGGGTTCAAGCACATCTTCATATCTCTACCATGCCA
* * *
34628617 ATGCCATTTTTATGGCTGGTAAATTCATACAATGGTCCTCTAAGCCTTCATGTGAAGTTTCGTGG
196 ATGCCAATTTTATGGCTGGTAAATTCATACAATGGTCCCCTAAGCCTTCATGTGAAGTTTCGTGC
*
34628682 CAAGACGACCAG-TTTTCTATTTTTCACGACT-TTCAAAAATTTTTACGGTTCGGGATTTTTTTA
261 CAAGACGACCAGTTTTTCTATTTTTCACGA-TGTTCAAAAATTTTTACGGTTCAGGA-TTTTTTA
* * *
34628745 A-ATTTTTTTAGAAAG-GTTTTTGTCCCCAAATTTGGTAAAGGTGATCCTTATATTTTTTTTCGC
324 ATATCTTTCTAGAAAGAG-TTTTGTCCCCAAATTTGGTAAAGGTGATCCTTATATTTTTGTTCGC
*
34628808 ATGCACAAAAA-AGTTCAGCT-AAAACTCAAAGTGGAGAAGATTTTGTGACCGTTTGAAAAAAGA
388 ATGCACAAAAATA-TTCAGCTAAAAACTCAAAGTGGAGAAGATTTTGTGACCATTTGAAAAAAGA
* * *
34628871 GTCCCCATTTCAGACACTTTAATGGCGACTGGCATCAAACCTGTAAAATCTCAAATGATCTTTAA
452 GTCCCCATTTCAGACACTTTAATGGCGACTGGCAGCAAACCTATAAAATCTCAAATGATATTTAA
* ** *
34628936 GGGGGTGTGAGTTTTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
517 GGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGAGGGCCAATATAAGGGCCAAGTACCAGCAC
34629001 CCA
582 CCA
34629004 TCGCACATCA
Statistics
Matches: 526, Mismatches: 51, Indels: 11
0.89 0.09 0.02
Matches are distributed among these distances:
726 166 0.32
727 105 0.20
728 157 0.30
729 98 0.19
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.28
Consensus pattern (729 bp):
AACCCTCGATCCAATCTGATCTTAGACTGGAAATGAACTCCATATGCTTAGACTGGGGATGAACT
CCGTATGCCTAAGTCAACCCACGAAACGAGCGTCCGGGCACTCAGCCGACCAGAAAGGCAAGATG
CGCAAGCCAGGGATCGAACGGGTGGTAGGTGGGTTCAAGCACATCTTCATATCTCTACCATGCCA
ATGCCAATTTTATGGCTGGTAAATTCATACAATGGTCCCCTAAGCCTTCATGTGAAGTTTCGTGC
CAAGACGACCAGTTTTTCTATTTTTCACGATGTTCAAAAATTTTTACGGTTCAGGATTTTTTAAT
ATCTTTCTAGAAAGAGTTTTGTCCCCAAATTTGGTAAAGGTGATCCTTATATTTTTGTTCGCATG
CACAAAAATATTCAGCTAAAAACTCAAAGTGGAGAAGATTTTGTGACCATTTGAAAAAAGAGTCC
CCATTTCAGACACTTTAATGGCGACTGGCAGCAAACCTATAAAATCTCAAATGATATTTAAGGGG
GTGTGAGTTCTCAAGGTTTGATGAGGGATAGAGGGCCAATATAAGGGCCAAGTACCAGCACCCAA
CCCATGAAATGAGCGTGTGAGCTCTCCGTATGCATAAACCAACCCATAAAATGAGCGTGCGGGTG
CTCAGTCGATCAGAGAGGCAGAATACGTAAATCGAGGATCGACCTAGTCCCCCTTGCATGTTACC
GATCCTGCTACCGT
Found at i:34629648 original size:158 final size:156
Alignment explanation
Indices: 34629189--34629691 Score: 485
Period size: 158 Copynumber: 3.2 Consensus size: 156
34629179 AACTCCATAT
*
34629189 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGACGT-CGGGCGCTCAG
* *
34629254 TCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATTCCCCCCTGCGTGCTGTCGATC
65 TCGACCGGAGAGGCAGAATG-GCAAGCCGGGGATCGGCCCGA-TCCCCCCTGCGTGCTGTCGATC
* **
34629319 CTGCTACCGTAACCCTCGGTCTGGTCTGA
128 CTGCTACCGCAACCCTCGGTCCAGTCTGA
* * * * * * * * *
34629348 TCTTAGACAAGGAATAAACTCCGTATGCATAAGTCAACCCACGAAA-TGAGCGAGCGGGCACTGA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGA-CG-TCGGGCGCTCA
* * * * * * *
34629412 GCCGACCGAAGAGGCATAATGGCAAGCCAGGCATCGGCCCTATCCCCCTCTGCGTGCTG-CTGTT
64 GTCGACCGGAGAGGCAGAATGGCAAGCCGGGGATCGGCCCGATCCCCC-CTGCGTGCTGTC-GAT
* * * *
34629476 CCTGCTGCCACAACCCTTGGTCCAG-CTGGG
127 CCTGCTACCGCAACCCTCGGTCCAGTCT-GA
* * *
34629506 GCTTAGCCATGGAATGAACTCCCTATGCCTAAGCCAACCCAAGAAACGGACGTCTGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGACGTC-GGGCGCTCAG
* * * * * *
34629571 TCGGCCGGAGAGGCAGAATGTGCAAGTCGGGGATCGGCTCGGTCCCCCCTACGTGTTGTCGATCC
65 TCGACCGGAGAGGCAGAATG-GCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCC
* * * *
34629636 TGCTATCGCAACCTTCGCT-CTGTTCTGA
129 TGCTACCGCAACCCTCGGTCCAG-TCTGA
* * *
34629664 TCTTAAAC-TGGGAATGAACTCCATATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
34629692 TTAGACTGGG
Statistics
Matches: 269, Mismatches: 63, Indels: 25
0.75 0.18 0.07
Matches are distributed among these distances:
157 13 0.05
158 162 0.60
159 94 0.35
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGACGTCGGGCGCTCAGT
CGACCGGAGAGGCAGAATGGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCCTG
CTACCGCAACCCTCGGTCCAGTCTGA
Found at i:34629701 original size:26 final size:26
Alignment explanation
Indices: 34629665--34629717 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
34629655 CTGTTCTGAT
34629665 CTTAAACTGGGAATGAACTCCATATG
1 CTTAAACTGGGAATGAACTCCATATG
* * *
34629691 CTTAGACTGGGGATGAACTCTATATG
1 CTTAAACTGGGAATGAACTCCATATG
34629717 C
1 C
34629718 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCATATG
Found at i:34630061 original size:26 final size:26
Alignment explanation
Indices: 34630032--34630083 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
34630022 CCAGTCTGAT
34630032 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
34630058 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
34630084 TCCAAGTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:34631277 original size:26 final size:26
Alignment explanation
Indices: 34631248--34631300 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
34631238 CCGATCCAAT
* *
34631248 CTTAGATTAGGAATGTACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
34631274 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
34631300 C
1 C
34631301 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:34635015 original size:158 final size:157
Alignment explanation
Indices: 34634602--34635017 Score: 410
Period size: 158 Copynumber: 2.6 Consensus size: 157
34634592 AACTCTGTAT
* * * *
34634602 GCTTAGACATGGAATGAACTCCATATACCTAAGCCAACCCACGAAACGAGCATGCAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * *
34634667 TC-GACCGGAGAGGCAGAATGCACAAGCCAGAGACCGACCCGCTCCCCCTATGTGCTGTTGATCT
66 TCGGA-CGGAGAGGCAGAATGCACAAGCCAGGGATCGACCCGCTCCCCCTATGTGCTGTTGATCC
* ** * *
34634731 TGCTGCTGCAACCCTCTGTTCGATCCTA
130 CGCTGCCACAACCCTCGGTTCGATCCGA
* * * * * * * * *
34634759 TCTTAGAC-TGGGAATGCACTCCGTATGCATAAGTCAACCCATGACATGAGCGTGCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
* * * * * * *
34634823 GTCGGCCGAAGAGGCATAATGCGCAAGCCAGGGATCGA-CCGGTCCCCCTCTGCATGCTGTTGGT
65 GTCGGACGGAGAGGCAGAATGCACAAGCCAGGGATCGACCCGCTCCCCCTATG--TGCTGTTGAT
* * * *
34634887 CCCGCTGCCACAACCCTCGGTCTGGCT-GGG
128 CCCGCTGCCACAACCCTCGGT-TCGATCCGA
*
34634917 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACG-GTCGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAG-CGTGCGGGCGCTCA
* * * *
34634981 GCCGGATGGAGAGGCAGAATGCATAAGCCGGGGATCG
65 GTCGGACGGAGAGGCAGAATGCACAAGCCAGGGATCG
34635018 GCCAGTTCCC
Statistics
Matches: 203, Mismatches: 49, Indels: 13
0.77 0.18 0.05
Matches are distributed among these distances:
156 13 0.06
157 80 0.39
158 106 0.52
159 4 0.02
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
TCGGACGGAGAGGCAGAATGCACAAGCCAGGGATCGACCCGCTCCCCCTATGTGCTGTTGATCCC
GCTGCCACAACCCTCGGTTCGATCCGA
Found at i:34636018 original size:26 final size:26
Alignment explanation
Indices: 34635982--34636034 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
34635972 CCGATTTGAT
*
34635982 CTTAGACTGGGAATGAATTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
34636008 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
34636034 C
1 C
34636035 CTAAGTCAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:34636386 original size:26 final size:26
Alignment explanation
Indices: 34636350--34636402 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34636340 CTAGTTTGAT
*
34636350 CTTAGACTAGGAATGAATTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
34636376 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
34636402 C
1 C
34636403 CAAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:34637428 original size:26 final size:26
Alignment explanation
Indices: 34637399--34637452 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
34637389 CCGGTCCATT
34637399 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
34637425 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
34637451 CT
1 CT
34637453 AAGCCAACCC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:34638588 original size:158 final size:158
Alignment explanation
Indices: 34638144--34638645 Score: 442
Period size: 158 Copynumber: 3.2 Consensus size: 158
34638134 AACTCCATAT
* * * *
34638144 GCTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCCACGAAACGAGAGTGCAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGAGTGCGGGTGCTCAG
* * * ** * * * * *
34638209 TCGGTCGGAGAGGTAGAATGCGCAAGCTGGGGATCGATCCAGTCCCCCATGCATACTGTCAGTTC
66 TCGGCCGGAAAGGTAGAATGCGCAAGCAGGGGATCGGCCCGGTCCCCCCTGCATGCTGTCAATCC
* *
34638274 TACTGCTGCAACCCTCGGTCCGGTCTGA
131 TGCTGCCGCAACCCTCGGTCCGGTCTGA
* * * * * * * *
34638302 TCATAGA-TTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGTGTGCGGTTGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGAGTGCGGGTGCTCA
* * * * * * *
34638366 G-CTGGCC--AAAGATCATAATGCGCAAGCAAGGGATCGGCCTGGTCCCCCTCTCCGTGCTATCA
65 GTC-GGCCGGAAAGGT-AGAATGCGCAAGCAGGGGATCGGCCCGGTCCCCC-CTGCATGCTGTCA
* * ** *
34638428 ATCCCGCTGCCACAACCCTCGGTTTGG-CTGGG
127 ATCCTGCTGCCGCAACCCTCGGTCCGGTCT-GA
* * * * * *
34638460 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAGCCATGAAATGGGCGTGCGGGTACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGAGTGCGGGTGCTCAG
* * *
34638525 TCGGCCGGATAGGTAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCATGCTGCCAATCC
66 TCGGCCGGAAAGGTAGAATGCGCAAGCAGGGGATCGGCCCGGTCCCCCCTGCATGCTGTCAATCC
* * *
34638590 TGCTGCCGCAACCCTTGGTCCAGT-TCAA
131 TGCTGCCGCAACCCTCGGTCCGGTCT-GA
* *
34638618 TCTTAGAC-TGAGAATGAACTCCATATGC
1 GCTTAGACATG-GAATGAACTCCGTATGC
34638646 TTAGACTGGG
Statistics
Matches: 263, Mismatches: 70, Indels: 22
0.74 0.20 0.06
Matches are distributed among these distances:
156 4 0.02
157 33 0.13
158 190 0.72
159 32 0.12
160 4 0.02
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.21
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGAGTGCGGGTGCTCAG
TCGGCCGGAAAGGTAGAATGCGCAAGCAGGGGATCGGCCCGGTCCCCCCTGCATGCTGTCAATCC
TGCTGCCGCAACCCTCGGTCCGGTCTGA
Found at i:34638648 original size:26 final size:26
Alignment explanation
Indices: 34638619--34638671 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
34638609 CCAGTTCAAT
34638619 CTTAGACTGAGAATGAACTCCATATG
1 CTTAGACTGAGAATGAACTCCATATG
* * *
34638645 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCATATG
34638671 C
1 C
34638672 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCATATG
Found at i:34639016 original size:26 final size:26
Alignment explanation
Indices: 34638987--34639039 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
34638977 CTGGTTTGAT
* *
34638987 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
34639013 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
34639039 C
1 C
34639040 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34640897 original size:158 final size:158
Alignment explanation
Indices: 34640609--34640901 Score: 363
Period size: 158 Copynumber: 1.9 Consensus size: 158
34640599 GCTTCGACAC
** * * * *
34640609 GGAATGAACTTTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAACCGGTCGGAG
1 GGAATGAACTTCATATGCATAAGCCAACCCACGAAACGAGCGTGCAGGAGCTCAACCGGTCGAAA
* * * * * * *
34640674 AGGCAGAATACGCAAGTCGGGGGTCGACCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGTCACA
66 AAGCAGAATACGCAAGCCAGGGATCGACCCGGTCCCCCCTACGTGCTGTCGATCCCGCTGCCACA
34640739 ACCCTTGGTCCAATCTAATCTTCGATTG
131 ACCCTTGGTCCAATCTAATCTTCGATTG
* * * * *
34640767 GGAATGAACTTCATATGCATAAGTCAACCTAGGAAACGAG-GTGCGGGAGCTGAACCGGTCGAAA
1 GGAATGAACTTCATATGCATAAGCCAACCCACGAAACGAGCGTGCAGGAGCTCAACCGGTCGAAA
* ** * *
34640831 AAGCATAATGTGCAAGCCAGGGATCGACCCGGTCCTCCTCTACGTGCTGTCGGTCCCGCTGCCAC
66 AAGCAGAATACGCAAGCCAGGGATCGACCCGGTCC-CCCCTACGTGCTGTCGATCCCGCTGCCAC
34640896 AACCCT
130 AACCCT
34640902 CGGCCTGGCT
Statistics
Matches: 111, Mismatches: 23, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
157 47 0.42
158 64 0.58
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.19
Consensus pattern (158 bp):
GGAATGAACTTCATATGCATAAGCCAACCCACGAAACGAGCGTGCAGGAGCTCAACCGGTCGAAA
AAGCAGAATACGCAAGCCAGGGATCGACCCGGTCCCCCCTACGTGCTGTCGATCCCGCTGCCACA
ACCCTTGGTCCAATCTAATCTTCGATTG
Found at i:34641122 original size:26 final size:26
Alignment explanation
Indices: 34641073--34641125 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
34641063 CCGGTCTGAT
* *
34641073 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
34641099 CTTAGACTAGGAATG-ACGTCCGTATG
1 CTTAGACTAGGAATGAAC-TCCGTATG
34641125 C
1 C
34641126 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 2 0.08
26 22 0.92
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:34642195 original size:159 final size:158
Alignment explanation
Indices: 34641832--34642294 Score: 419
Period size: 159 Copynumber: 2.9 Consensus size: 158
34641822 AACTCCATAT
* * * *
34641832 GCTTAGACATGGAATAAACTCCGTATGCCTAAGCTAACCCATGAAACGAGCGTACGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTACGGGCGCTCAG
**
34641897 CCGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCAACCCGGTCCACCCTATGTGCTGTCGATCC
66 CCGACCAAAGAGGCAGAATGCGCAAGCCAGGGATCAACCCGGTCCACCCTATGTGCTGTCGATCC
* * *
34641962 TGATGCCACAACCCTTGGTCTGGCCTGA
131 TGATGCCACAACCCTCGATCCGGCCTGA
* * * * * * * * *
34641990 TCTTAGAC-TGGGAATGAATTTCGTATGCATAAGTCAACCCATGAAATGAGCTTTCGGGCGTTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTACGGGCGCTCA
* * * * ** * * *
34642054 GCCGGCCAAAGAGGCATAGTGCGCAAGCTAGGGATCGGCCCGGTCCCCCTCTGTGTGCTG-CTGG
65 GCCGACCAAAGAGGCAGAATGCGCAAGCCAGGGATCAACCCGGTCCACC-CTATGTGCTGTC-GA
** * *
34642118 TTTTGCTGCCACAACCCTCGATCCGG-CTGGG
128 TCCTGATGCCACAACCCTCGATCCGGCCT-GA
* * * * *
34642149 GCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAATGGGTGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTACGGGCGCTCAG
** ** * * * * * * *
34642214 CCGGTCGGAGAGGCAGAATGTGCAAGCCGGGGATCAGCTCGATCCCCCCTATGTGCTGCCGATCC
66 CCGACCAAAGAGGCAGAATGCGCAAGCCAGGGATCAACCCGGTCCACCCTATGTGCTGTCGATCC
* * *
34642279 TGCTGTCGCAACCCTC
131 TGATGCCACAACCCTC
34642295 TGTCCGATTT
Statistics
Matches: 238, Mismatches: 61, Indels: 12
0.77 0.20 0.04
Matches are distributed among these distances:
157 1 0.00
158 117 0.49
159 119 0.50
160 1 0.00
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.21
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTACGGGCGCTCAG
CCGACCAAAGAGGCAGAATGCGCAAGCCAGGGATCAACCCGGTCCACCCTATGTGCTGTCGATCC
TGATGCCACAACCCTCGATCCGGCCTGA
Found at i:34642344 original size:26 final size:26
Alignment explanation
Indices: 34642308--34642360 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
34642298 CCGATTTGAT
* *
34642308 CTTAGACTGGGAATGAGCTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
34642334 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
34642360 C
1 C
34642361 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:34642704 original size:26 final size:26
Alignment explanation
Indices: 34642675--34642727 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
34642665 TCAGTCCGAT
34642675 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
34642701 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
34642727 C
1 C
34642728 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34649832 original size:26 final size:26
Alignment explanation
Indices: 34649803--34649855 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
34649793 CCGATCTGAT
34649803 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
34649829 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
34649855 C
1 C
34649856 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:34650322 original size:26 final size:26
Alignment explanation
Indices: 34650293--34650345 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34650283 CCGATTCGAT
34650293 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
* *
34650319 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
34650345 C
1 C
34650346 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:34653225 original size:26 final size:26
Alignment explanation
Indices: 34653187--34653239 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
34653177 CCAGTCTGAT
* *
34653187 CTTAGATAGGGAATAAACTTCGTATG
1 CTTAGACAGGGAATAAACTCCGTATG
* *
34653213 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACAGGGAATAAACTCCGTATG
34653239 C
1 C
34653240 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACAGGGAATAAACTCCGTATG
Found at i:34653344 original size:184 final size:184
Alignment explanation
Indices: 34653028--34653400 Score: 491
Period size: 184 Copynumber: 2.0 Consensus size: 184
34653018 TCTGGCTGGG
* *
34653028 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCGACCCATGAAATGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAACGTGCGGGCGCTCAG
* * * * * * * *
34653093 CCGACCGGAGAGGTAGAATGCGTAACCTGGGGATCAGCCTGGTCCCCCCTGCGTGCTGCCGATCC
66 CCGACCGAAGAGGCAGAATGCGCAACCTGGGGATCAGCCCGATACCCCCTGCATGCTGCCAATCC
* *
34653158 TGCTG-TCGCAACCCTCAGTCCAGTCTGATCTTAGA-TAGGGAATAAACTTCGTAT
131 TGCTGCT-GCAACCCTCAGTCCAGTCTGATCATAGACTA-GGAATAAACTCCGTAT
34653212 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAACGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAACGTGCGGGCGCTCAG
* * * ** * **
34653277 TCGACCGAAGAGGCAGAATGTGCAA-GTCGGGGATTGGCCCGATAGCCCCTGCATGCTGTTAATC
66 CCGACCGAAGAGGCAGAATGCGCAACCT-GGGGATCAGCCCGATACCCCCTGCATGCTGCCAATC
* * *
34653341 CTGCTGCTGCAACCCTCAGTCTAGTTTGATCATAGACTAGGAATGAACTCCGTAT
130 CTGCTGCTGCAACCCTCAGTCCAGTCTGATCATAGACTAGGAATAAACTCCGTAT
34653396 GCTTA
1 GCTTA
34653401 AGTCAACCCA
Statistics
Matches: 163, Mismatches: 23, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
183 1 0.01
184 159 0.98
185 3 0.02
ACGTcount: A:0.24, C:0.27, G:0.27, T:0.22
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAACGTGCGGGCGCTCAG
CCGACCGAAGAGGCAGAATGCGCAACCTGGGGATCAGCCCGATACCCCCTGCATGCTGCCAATCC
TGCTGCTGCAACCCTCAGTCCAGTCTGATCATAGACTAGGAATAAACTCCGTAT
Found at i:34654627 original size:26 final size:26
Alignment explanation
Indices: 34654589--34654641 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
34654579 GGCTCAAAAT
34654589 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
34654615 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
34654641 C
1 C
34654642 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:34654973 original size:159 final size:156
Alignment explanation
Indices: 34654614--34655114 Score: 544
Period size: 157 Copynumber: 3.2 Consensus size: 156
34654604 AACTCCGTAT
* * *
34654614 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCA
1 GCTTAGAC-TGGGAATGAACTCCGTATGCCTAATCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * *
34654678 GCCGGCCGGAGAGGCAGAATGTGCAAGCCGAGGATAGGCCTGAT-CCCCCTACGTGCTGTCGATC
65 GCCAGCCGGAGAGGCAGAATGCGCAAGCCGGGGATA-GCCCGATCCCCCCTGCGTGCTATCGATC
* * * ** *
34654742 CTGCTGCTGCAACCTTTTATCCGATCTGA
129 CTACTGCCGCAACCCTTGGTCCG-GCTGA
* * * *
34654771 TCTTAGACTGGGAATGAACTCCGTATGCATAAGT-CAACCCACGAAATGAGCGTGCGGGCGCTGA
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAA-TCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * *
34654835 GCCAACCGAAGAGGCATAATGCGCAAGCCGGGGATTAGCCCGATCCCCCTCTGCGTGCTACCGAT
65 GCCAGCCGGAGAGGCAGAATGCGCAAGCCGGGGA-TAGCCCGATCCCCC-CTGCGTGCTATCGAT
* * *
34654900 CCCACTGCCACAACCCTTGGTCCGGCTAGG
128 CCTACTGCCGCAACCCTTGGTCCGGCT-GA
* **
34654930 GCTTAGACAT-GGAATGAACTCCCTATGCCTAATCCAATTCACGAAACGAGCGTGCGGGCGCTCA
1 GCTTAGAC-TGGGAATGAACTCCGTATGCCTAATCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * *
34654994 GCCAGCCGGAGAGGTAGAATGCGCAAGCC-GGGATCGACCTAGTCCCCCCTGCGTGCTATCGATC
65 GCCAGCCGGAGAGGCAGAATGCGCAAGCCGGGGATAGCCCGA-TCCCCCCTGCGTGCTATCGATC
* * *
34655058 CTACTTCCGTAACCCTCGGTCCGGTCTGA
129 CTACTGCCGCAACCCTTGGTCCGG-CTGA
*
34655087 TCTTAGACTGGGAATGAACTCCGTATGC
1 GCTTAGACTGGGAATGAACTCCGTATGC
34655115 TTAGATAGGG
Statistics
Matches: 284, Mismatches: 49, Indels: 22
0.80 0.14 0.06
Matches are distributed among these distances:
156 2 0.01
157 152 0.54
158 21 0.07
159 108 0.38
160 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (156 bp):
GCTTAGACTGGGAATGAACTCCGTATGCCTAATCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCAGCCGGAGAGGCAGAATGCGCAAGCCGGGGATAGCCCGATCCCCCCTGCGTGCTATCGATCCT
ACTGCCGCAACCCTTGGTCCGGCTGA
Found at i:34655117 original size:26 final size:26
Alignment explanation
Indices: 34655088--34655139 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
34655078 CCGGTCTGAT
*
34655088 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGA-TAGGGAATAAACTCCGTATG
*
34655114 CTTAGATAGGGGATAAACTCCGTATG
1 CTTAGATAGGGAATAAACTCCGTATG
34655140 TCTAAGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.29, C:0.17, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGATAGGGAATAAACTCCGTATG
Found at i:34655494 original size:26 final size:26
Alignment explanation
Indices: 34655456--34655508 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34655446 CCGGTCCGAT
*
34655456 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
34655482 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
34655508 C
1 C
34655509 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Done.