Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 381 of 402
Found at i:34655495 original size:184 final size:183
Alignment explanation
Indices: 34655297--34655665 Score: 506
Period size: 184 Copynumber: 2.0 Consensus size: 183
34655287 TTCGACCGAG
*
34655297 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGATCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGAGCTCAA
* * * * * *
34655362 TCGGTCGGAGTGGCAGAATGCATAAGCTGGGGATCGA-CTCGGTCCCCCATGCGTGCTGCCGATC
66 CCGGCCGAAGAGGCAGAATGCATAAGCTGAGGATCGACCT-GGTCCCCC-TGCGTACTGCCGATC
* * *
34655426 CTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTTCGTAT
129 CTGCTGCCGCAAACCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
* * *
34655481 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGAGCTCAA
* * * * *
34655546 CCGGCCGAAGAGGCAGAATGCGTAAGCTGAGGATTGGCCTGGTCCCCCTGCGTACTGTCGATCTT
66 CCGGCCGAAGAGGCAGAATGCATAAGCTGAGGATCGACCTGGTCCCCCTGCGTACTGCCGATCCT
* * * * *
34655611 GCTGCCGTAAACCTTGGTCTGGTCTGATGTTAGACTGGGAATGAACTCCGTAT
131 GCTGCCGCAAACCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
34655664 GC
1 GC
34655666 ATAAGTCAAC
Statistics
Matches: 161, Mismatches: 23, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
183 61 0.38
184 98 0.61
185 2 0.01
ACGTcount: A:0.22, C:0.27, G:0.29, T:0.21
Consensus pattern (183 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGAGCTCAA
CCGGCCGAAGAGGCAGAATGCATAAGCTGAGGATCGACCTGGTCCCCCTGCGTACTGCCGATCCT
GCTGCCGCAAACCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
Found at i:34655896 original size:159 final size:157
Alignment explanation
Indices: 34655481--34655888 Score: 419
Period size: 159 Copynumber: 2.6 Consensus size: 157
34655471 AACTTCGTAT
*
34655481 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA-GAAACGAGCGTGCGGGCGCTCAG
* * * * * * **
34655546 CCGGCCGAAGAGGCAGAATGCGTAAGCTGAGGATTGGCCTGGTCCCCCTGCGTACTGTCGATCTT
65 CCGACCGAAGAGGCAAAATGCGCAAGCTGAGGATCGGCCCGGTCCCCCTGCGTACTGCCGATCCC
* * ** * *
34655611 GCTGCCGTAAACCTTGGTCTGGTCTGAT
130 ACTACCACAAACCTCGGTCTGGTCTGAG
* * * * * * *
34655639 G-TTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACAAAATGAGCGTACGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCA-GAAACGAGCGTGCGGGCGCTCA
* * * * *
34655702 GCCGACCGAAGAGGCATAATGCGCAAGTTGGGGATCGGCCCGGTCCCCCTTTGCGTGCTGCCGGT
64 GCCGACCGAAGAGGCAAAATGCGCAAGCTGAGGATCGGCCCGGTCCCCC--TGCGTACTGCCGAT
* *
34655767 CCCACTACCACAACCCTCGGTCTGG-CTGGG
127 CCCACTACCACAAACCTCGGTCTGGTCTGAG
* * *
34655797 GCTTAGACATGGAATGAACTCCCTATGCCCAAGCCAACCCATGAAACG-GACGTGCGGGTGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA-GAAACGAG-CGTGCGGGCGCTCA
* *
34655861 ACCGACCGGAGAGGCAAAATGCGCAAGC
64 GCCGACCGAAGAGGCAAAATGCGCAAGC
34655889 CGTGGATCAA
Statistics
Matches: 201, Mismatches: 43, Indels: 11
0.79 0.17 0.04
Matches are distributed among these distances:
156 1 0.00
157 94 0.47
158 6 0.03
159 99 0.49
160 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.29, T:0.18
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAGAAACGAGCGTGCGGGCGCTCAGC
CGACCGAAGAGGCAAAATGCGCAAGCTGAGGATCGGCCCGGTCCCCCTGCGTACTGCCGATCCCA
CTACCACAAACCTCGGTCTGGTCTGAG
Found at i:34656366 original size:26 final size:26
Alignment explanation
Indices: 34656337--34656389 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
34656327 CCGGTCTGAT
*
34656337 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAACGAACTCCGTATG
*
34656363 CTTAGACATGGAACGAACTCTGTATG
1 CTTAGACATGGAACGAACTCCGTATG
34656389 C
1 C
34656390 CTAAGCCAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAACGAACTCCGTATG
Found at i:34656706 original size:159 final size:158
Alignment explanation
Indices: 34656431--34656829 Score: 372
Period size: 159 Copynumber: 2.5 Consensus size: 158
34656421 GCTCAGTTGG
* * * * * * * * * *
34656431 CCGGAGAGGCAGAATGTGCAAGCTGGGGACCAGC-CTGGTCCCCCCTGCATGTTGTCGATCCTGC
1 CCGGAGAGACAGAATGCGCAAGCCGAGGATCGGCTC-GGTCCCCCCTGCATGCTGCCAATCCCGC
* ** * ** * * * *
34656495 TGCCACAAGCCTCGGTCCGATTCGATCTTGGAC-TGGGGATGAACTCCGTATGCCTAAG-TCAAC
65 TGCCACAACCCTCGGTCCGGCTGGGGCTTAGACAT-TGAATGAACTCCCTATGCCTAAGCT-AAC
* *
34656558 CCACGAAACAAGCATGCGGGCACTGAGCCAA
128 CCACGAAACAAGCATACGGGCACTCAGCCAA
* * *
34656589 CCGGAGAGACATAATGCGCAAGCCGAGGATCGGCTCGGTCCTCCTCTGCATGCTGTCAATCCCGC
1 CCGGAGAGACAGAATGCGCAAGCCGAGGATCGGCTCGGTCC-CCCCTGCATGCTGCCAATCCCGC
34656654 TGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATTGAATGAACTCCCTATGCCTAAGCTAACCC
65 TGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATTGAATGAACTCCCTATGCCTAAGCTAACCC
* ** ** **
34656719 ATGAAACGGGCATACGGGTGCTCAGCCGG
130 ACGAAACAAGCATACGGGCACTCAGCCAA
* * * * * * *
34656748 CCGGAGAGGCAGAATGCGTAAGCTGGGGATCGGCTCGGTCCCCCCTGCGTGCTGCCGATCCTGCT
1 CCGGAGAGACAGAATGCGCAAGCCGAGGATCGGCTCGGTCCCCCCTGCATGCTGCCAATCCCGCT
* *
34656813 GTCGCAACCCTCGGTCC
66 GCCACAACCCTCGGTCC
34656830 AGTTCGATCT
Statistics
Matches: 195, Mismatches: 42, Indels: 8
0.80 0.17 0.03
Matches are distributed among these distances:
158 66 0.34
159 127 0.65
160 2 0.01
ACGTcount: A:0.21, C:0.32, G:0.29, T:0.19
Consensus pattern (158 bp):
CCGGAGAGACAGAATGCGCAAGCCGAGGATCGGCTCGGTCCCCCCTGCATGCTGCCAATCCCGCT
GCCACAACCCTCGGTCCGGCTGGGGCTTAGACATTGAATGAACTCCCTATGCCTAAGCTAACCCA
CGAAACAAGCATACGGGCACTCAGCCAA
Found at i:34656795 original size:882 final size:862
Alignment explanation
Indices: 34654587--34656915 Score: 2914
Period size: 867 Copynumber: 2.7 Consensus size: 862
34654577 GTGGCTCAAA
*
34654587 ATCTTAGACTAGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
* *
34654652 CCATGAAACGAGCGTGCGGGTGCTCAGCCGGCCGGAGAGGCAGAATGTGCAAGCCGAGGATAGGC
66 CC-TGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGGCAGAATGTGCAAGCTGAGGATA-GC
* * * **
34654717 CTGATCCCCCTACGTGCTGTCGATCCTGCTGCTGCAACCTTTTATCCGATCTGATCTTAGACTGG
129 CTGGTCCCCCTGCGTGCTGTCGATCCTGCTGCCGCAACC-TTGGTCCGATCTGATCTTAGACTGG
*
34654782 GAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGCGTGCGGGCGCTGAGCCAACCGAAGA
193 GAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGCGTGCGGGCACTGAGCCAACCGAAGA
** * *
34654847 GGCATAATGCGCAAGCCGGGGATTAGCCCGATCCCCCTCTGCGTGCTACCGATCCCACTGCCACA
258 GGCATAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGCCGATCCCACTGCCACA
* * * ** *
34654912 ACCCTTGGTCCGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAATCCAATTCACGAAAC
323 ACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAC
* * * * *
34654977 GAGCGTGCGGGCGCTCAGCCAGCCGGAGAGGTAGAATGCGCAAGCCGGGATCGACCTAGTCCCCC
388 GGGCGTGCGGGTGCTCAGCCGGCCGGAGAGGCAGAATGCGCAAGCGGGGATCGACC-AGTCCCCC
*
34655042 CTGCGTGCTATCGATCCTACT-TCCGTAACCCTCGGTCCGG-TCTGATCTTAGACTGGGAATGAA
452 CTGCGTGCTATCGATCCTGCTGT-CGTAACCCTCGGTCCGGTTC-GATCTTAGACTGGGAATGAA
* * * * **
34655105 CTCCGTATGCTTAGA-TAGGGGATAAACTCCGTATGTCTAAGTCAACCCATGAAACGAGCGTGTA
515 CTCC-TTTGCTTAGACTA-GGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACA
* *
34655169 GGTGCTCAGTCGGCCGGAGAGGCCGGCCGAAAAGGCATAATGCGCAAGCCGGGGATCAGCCCGAT
578 GGTGCTCAGTCGGCCAGAGAGGCCGGCCGAAAAGGCATAATGCACAAGCCGGGGATCAGCCCGAT
* * * * *
34655234 TCCCCTCTGCGTGCTACCGATCTCGCTGCCGGTCCTGCTGCCACAACCCTCGATTCGACCGAGGC
643 CCCCCTCTGCGTGCTACCGATCCCGCTACCGGTCCTCCTGCCACAACCCTCGATTAGACCGAGGC
* *
34655299 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGATCTCAATC
708 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGATCTCAACC
* * *** * *
34655364 GGTCGGAGTGGCAGAATGCATAAGCTGGGGATCGACTCGGTCCCCCATGCGTGCTGCCGATCCTG
773 GGTCGGAGAGGCAGAATGCACAAGCCAAGGATCGACTCGATCCCCCATACGTGCTGCCGATCCTG
*
34655429 CTGTCGCAACCCTCGGTCCGGTCCG
838 CTGTCGCAACCCTCAGTCCGGTCCG
*
34655454 ATCTTAGACTGGGAATGAACTTCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
* * * *
34655519 CGAC-GAAACGAGCGTGCGGGCGCTCAGCCGGCCGAAGAGGCAGAATGCGTAAGCTGAGGATTGG
66 C--CTGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGGCAGAATGTGCAAGCTGAGGA-TAG
* * * * * *
34655583 CCTGGTCCCCCTGCGTACTGTCGATCTTGCTGCCGTAAACCTTGGTCTGGTCTGATGTTAGACTG
128 CCTGGTCCCCCTGCGTGCTGTCGATCCTGCTGCCG-CAACCTTGGTCCGATCTGATCTTAGACTG
* * *
34655648 GGAATGAACTCCGTATGCATAAGTCAACCCACAAAATGAGCGTACGGGCACTGAGCCGACCGAAG
192 GGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGCGTGCGGGCACTGAGCCAACCGAAG
** * * *
34655713 AGGCATAATGCGCAAGTTGGGGATCGGCCCGGTCCCCCTTTGCGTGCTGCCGGTCCCACTACCAC
257 AGGCATAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGCCGATCCCACTGCCAC
* *
34655778 AACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCCAAGCCAACCCATGAAA
322 AACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAA
* * * * * * *
34655843 CGGACGTGCGGGTGCTCAACCGACCGGAGAGGCAAAATGCGCAAGCCGTGGATCAACCCAATCCC
387 CGGGCGTGCGGGTGCTCAGCCGGCCGGAGAGGCAGAATGCGCAAG-CGGGGATCGA-CCAGTCCC
* * *
34655908 CCCTGCGTGCTATCGATCCTGCTGTCATAACCCTCGGTTCGGTTCAATCTTAGACTGGGAATGAA
450 CCCTGCGTGCTATCGATCCTGCTGTCGTAACCCTCGGTCCGGTTCGATCTTAGACTGGGAATGAA
* *
34655973 CTCCATTTGCTTAGACTAGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTACGG
515 CTCC-TTTGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACAG
* ** * * * *
34656038 GTGCTTAG-CTGGCCAGAGAGGCCGGTTGGAGAGGCATAATGTACAAGTCGGGGATCAGCCCAGA
579 GTGCTCAGTC-GGCCAGAGAGGCCGGCCGAAAAGGCATAATGCACAAGCCGGGGATCAGCCC-GA
* * * ** * * *
34656102 -CCCCCTCTGTGTGCTGCCGATCCCGCTACCGGTTCTCCTGCCGTAACCCTCGGTCTAG-CTGGG
642 TCCCCCTCTGCGTGCTACCGATCCCGCTACCGGTCCTCCTGCCACAACCCTCGAT-TAGACCGAG
* * * *
34656165 GCTTAGACATGGAATGAACTTCGTATGCCTAGGCCAACCCACGAAATGAGCATGTGGG-TGCTCA
706 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGAT-CTCA
* * * * *
34656229 GCCGGTCGGAGAGGTAGAATGCGCAAGCCAAGGATCGACTCGATCCCGCCTTACGTGCTGTCGAT
770 ACCGGTCGGAGAGGCAGAATGCACAAGCCAAGGATCGACTCGATCCC-CCATACGTGCTGCCGA-
*
34656294 CCTGCTCTTGGTCCTGCTACTGCAACCCTCAGTCCGGTCTG
833 --T-C-C-T-G--CTG-T-C-GCAACCCTCAGTCCGGTCCG
* *
34656335 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAACGAACTCTGTATGCCTAAGCCAAA
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCC-AA
* * ** * *
34656400 CCCTGAAACGAGTGTACGGGCGCTCAGTTGGCCGGAGAGGCAGAATGTGCAAGCTGGGGACCAGC
65 CCCTGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGGCAGAATGTGCAAGCTGAGGA-TAGC
* * * * *
34656465 CTGGTCCCCCCTGCATGTTGTCGATCCTGCTGCCACAAGCCTCGGTCCGAT-TCGATCTTGGACT
129 CTGGT-CCCCCTGCGTGCTGTCGATCCTGCTGCCGCAA-CCTTGGTCCGATCT-GATCTTAGACT
* * ** * *
34656529 GGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCATGCGGGCACTGAGCCAACCGGA
191 GGGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGCGTGCGGGCACTGAGCCAACCGAA
* * * * * * * *
34656594 GAGACATAATGCGCAAGCCGAGGATCGGCTCGGTCCTCCTCTGCATGCTGTCAATCCCGCTGCCA
256 GAGGCATAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGCCGATCCCACTGCCA
* *
34656659 CAACCCTCGGTCCGGCTGGGGCTTAGACATTGAATGAACTCCCTATGCCTAAGCTAACCCATGAA
321 CAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAA
* * * * *
34656724 ACGGGCATACGGGTGCTCAGCCGGCCGGAGAGGCAGAATGCGTAAGCTGGGGATCGGCTCGGTCC
386 ACGGGCGTGCGGGTGCTCAGCCGGCCGGAGAGGCAGAATGCGCAAGC-GGGGATCGAC-CAGTCC
** * *
34656789 CCCCTGCGTGCTGCCGATCCTGCTGTCGCAACCCTCGGTCCAGTTCGATCTTAGACTGGGAATGA
449 CCCCTGCGTGCTATCGATCCTGCTGTCGTAACCCTCGGTCCGGTTCGATCTTAGACTGGGAATGA
*
34656854 ACTCCTTATGCTTAGACT-GGAGATGAACTCCGTATGCCAAAGTCAACCCACGAAACGAGCGT
514 ACTCCTT-TGCTTAGACTAGG-GATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
34656916 GCGGCGCTCA
Statistics
Matches: 1248, Mismatches: 179, Indels: 55
0.84 0.12 0.04
Matches are distributed among these distances:
867 378 0.30
868 317 0.25
869 25 0.02
872 1 0.00
873 1 0.00
874 1 0.00
875 1 0.00
876 1 0.00
878 3 0.00
879 1 0.00
880 2 0.00
881 141 0.11
882 376 0.30
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (862 bp):
ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
CCTGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGGCAGAATGTGCAAGCTGAGGATAGCCT
GGTCCCCCTGCGTGCTGTCGATCCTGCTGCCGCAACCTTGGTCCGATCTGATCTTAGACTGGGAA
TGAACTCCGTATGCATAAGTCAACCCACGAAATGAGCGTGCGGGCACTGAGCCAACCGAAGAGGC
ATAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGCCGATCCCACTGCCACAACC
CTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGG
CGTGCGGGTGCTCAGCCGGCCGGAGAGGCAGAATGCGCAAGCGGGGATCGACCAGTCCCCCCTGC
GTGCTATCGATCCTGCTGTCGTAACCCTCGGTCCGGTTCGATCTTAGACTGGGAATGAACTCCTT
TGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACAGGTGCTCA
GTCGGCCAGAGAGGCCGGCCGAAAAGGCATAATGCACAAGCCGGGGATCAGCCCGATCCCCCTCT
GCGTGCTACCGATCCCGCTACCGGTCCTCCTGCCACAACCCTCGATTAGACCGAGGCTTAGACAT
GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGATCTCAACCGGTCGGAG
AGGCAGAATGCACAAGCCAAGGATCGACTCGATCCCCCATACGTGCTGCCGATCCTGCTGTCGCA
ACCCTCAGTCCGGTCCG
Found at i:34656879 original size:26 final size:26
Alignment explanation
Indices: 34656838--34656890 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34656828 CCAGTTCGAT
*
34656838 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
34656864 CTTAGACT-GGAGATGAACTCCGTATG
1 CTTAGACTGGGA-ATGAACTCCGTATG
34656890 C
1 C
34656891 CAAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 3 0.12
26 22 0.88
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34657488 original size:26 final size:26
Alignment explanation
Indices: 34657459--34657511 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
34657449 CCGATCCGAT
34657459 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
34657485 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
34657511 C
1 C
34657512 CAAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34659074 original size:26 final size:26
Alignment explanation
Indices: 34659036--34659088 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34659026 GGCTCAAAAT
*
34659036 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
34659062 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
34659088 C
1 C
34659089 CTAAGCCAGC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34659454 original size:159 final size:156
Alignment explanation
Indices: 34659061--34659562 Score: 498
Period size: 159 Copynumber: 3.2 Consensus size: 156
34659051 AACTTCGTAT
* * * *
34659061 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAGCCCACGAAA-CGAGCATGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATAG-GCGTGCGGGCGCTCA
* * * * *
34659125 GACGGTCGGAGAGGCAAAATGCGCAAGCTGGGGATCGGCCCTATCCCCCCTGTGTGCTGTCGATC
65 G-CAGCCGGAGAGGCATAATGCGCAAGC-GGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATC
*
34659190 CTGCT-GCAGCAACCCTCGGTC-GGTCTGA
128 CTGCTACCA-CAACCCTCGGTCTGGTCTGA
* * * *
34659218 TCTTAGAC-TGGGAATGAACTCCATATGCATAAGTCAACCCACGAAACTA-GCGTGCGGGCGCTG
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAA-TAGGCGTGCGGGCGCTC
* * * * * *
34659281 AGCCGACCGAAGAGGCATAATGTGCAAGTCGAGGATCGGCCCGATCCCCCTCTGCGTGCTGCCGG
64 AGCAG-CCGGAGAGGCATAATGCGCAAG-CGGGGATCGGCCCGATCCCCC-CTGCGTGCTGTCGA
*
34659346 TCCTGCTACCACAACCCTCGGTCTGG-CTGGG
126 TCCTGCTACCACAACCCTCGGTCTGGTCT-GA
* * * * * **
34659377 GCTTAGACATGGAATTAACTCCCTGTGCCTAAGCCAAACCATGAAATAGGCGTATGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATAGGCGTGCGGGCGCTCAG
*
34659442 CTAGCCGGAGAGGC-TGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTACTGTCGATC
66 C-AGCCGGAGAGGCAT-AATGCGCAAG-CGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATC
* * * * *
34659506 CTACTATCGCAACCCTCGGTCTGTTCCGA
128 CTGCTACCACAACCCTCGGTCTGGTCTGA
* *
34659535 TCTTAGAC-TGGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCATATGC
34659563 TTAGACTGGG
Statistics
Matches: 281, Mismatches: 49, Indels: 29
0.78 0.14 0.08
Matches are distributed among these distances:
156 3 0.01
157 90 0.32
158 92 0.33
159 94 0.33
160 2 0.01
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATAGGCGTGCGGGCGCTCAG
CAGCCGGAGAGGCATAATGCGCAAGCGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCCTG
CTACCACAACCCTCGGTCTGGTCTGA
Found at i:34659565 original size:26 final size:26
Alignment explanation
Indices: 34659536--34659588 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
34659526 CTGTTCCGAT
34659536 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
34659562 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
34659588 C
1 C
34659589 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34660001 original size:186 final size:184
Alignment explanation
Indices: 34659738--34660095 Score: 430
Period size: 186 Copynumber: 1.9 Consensus size: 184
34659728 CTACAAATGG
* * * * * * **
34659738 AATGAATTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGTGCGCTCAGTCGGTCGGAGAG
1 AATGAACTCCATATGCCTAACCCAACCCACGAAACGAGCGTACGGGCCCTCAGCCGACCGGAGAG
*** * * *
34659803 GCAGAATGCGCAAGCCGGGGATTGGCCCGGTCCCCCCCTGCGTGCTGCTGATCCTGCTGTCGCAA
66 GCAGAATGCGCAAGCCGGGGACCAGCCC-GTCCCCCCCTACGTGCTGCTAATCCTGCTATCGCAA
** * *
34659868 CCCTTGGTCCTGGTCCGATCTTAGACTGGGAATGAACTTCGTATCCTTAGACATGC
130 CCCTCAGT-CTGGTCCAATCTTAGACTGGGAATGAACTCCGTATCCTTAGACATGC
* *
34659924 AATGAACTCCATATGCCTAACCCAACCCACGAAACGAGTGTGCGGGCACCT-AGCCGACCGGAGA
1 AATGAACTCCATATGCCTAACCCAACCCACGAAACGAGCGTACGGGC-CCTCAGCCGACCGGAGA
* * * *** *
34659988 GGTAGAATGCGCAAGTCGGGGACCAGCCCGTTCCCTTTTACGTGCTGTTAATCCTGCTATCGCAA
65 GGCAGAATGCGCAAGCCGGGGACCAGCCCGTCCCCCCCTACGTGCTGCTAATCCTGCTATCGCAA
*
34660053 CCCTCAGTCTGGTCTAATCTTAGACTGGGAATGAACTCCGTAT
130 CCCTCAGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTAT
34660096 GCCTAAGTCA
Statistics
Matches: 143, Mismatches: 28, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
184 32 0.22
185 34 0.24
186 75 0.52
187 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.22
Consensus pattern (184 bp):
AATGAACTCCATATGCCTAACCCAACCCACGAAACGAGCGTACGGGCCCTCAGCCGACCGGAGAG
GCAGAATGCGCAAGCCGGGGACCAGCCCGTCCCCCCCTACGTGCTGCTAATCCTGCTATCGCAAC
CCTCAGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATCCTTAGACATGC
Found at i:34660424 original size:26 final size:26
Alignment explanation
Indices: 34660388--34660440 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34660378 CCGGTCTAAT
*
34660388 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
34660414 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
34660440 C
1 C
34660441 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34661148 original size:26 final size:26
Alignment explanation
Indices: 34661110--34661162 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
34661100 GGCTCAAAAT
34661110 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
34661136 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
34661162 C
1 C
34661163 CTATGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34661479 original size:159 final size:158
Alignment explanation
Indices: 34661135--34661598 Score: 352
Period size: 159 Copynumber: 2.9 Consensus size: 158
34661125 AACTCCGTAT
* * * * *** *
34661135 GCTTAGACAT-GGAATGAACTCCGTATGCCTATGCCAACCCACGGAACGAGTGTGTGGGCGCTCA
1 GCTTAGAC-TGGGAATCAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCACTCA
* * * * * * * * * ***
34661199 GTCC-GCCGGAGAGGCAGAATGTGCAAGCCAGGGATCGGGCCGATCCCCCCTGCGTGCTATTGAT
65 -ACCGGCCGAAGAGGCAGAATGCGCAAACCGGGGATCAGCCCGGTCCCCTCTGCGTGCTGCGGAT
* ** * * * *
34661263 CCTACTGCTGCAACCCTC-AGT-CTGATCCGA
129 CCTGCTGCCACAACCCTCGA-TCCAGCT-GGG
* * * * * * * *
34661293 TCTTAGACTGGGAATCAACTCCGTATGCGTAAGTCAACCCATGAAACGAGCGTGCGGGCACTGAG
1 GCTTAGACTGGGAATCAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCACTCAA
* *
34661358 CCGGCCGAAGAGGCTTG-ATGCGCAAACCGGGGATC-GACCTGGTCCCCCTCTGCGTGCTGTCGG
66 CCGGCCGAAGAGGC-AGAATGCGCAAACCGGGGATCAG-CCCGGT-CCCCTCTGCGTGCTG-CGG
34661421 -T-CTCGCTGCCACAACCCTCGATCCAGCTGGG
127 ATCCT-GCTGCCACAACCCTCGATCCAGCTGGG
* * * **
34661452 GCTTAGACAT-GGAATGAACTCCTTATGCCTAAGCCAACCCACGAAACGGGCGTACAGGTGCTCA
1 GCTTAGAC-TGGGAATCAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCACTCA
* * * *
34661516 ACCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGGTCCCTTCTGCGTGCTGCGGATC
65 ACCGGCCGAAGAGGCAGAATGCGCAAACCGGGGATCAGCCCGGTCCCCTCTGCGTGCTGCGGATC
*
34661581 CTGCTGCCGCAACCCTCG
130 CTGCTGCCACAACCCTCG
34661599 GTCTGGTCCG
Statistics
Matches: 241, Mismatches: 51, Indels: 28
0.75 0.16 0.09
Matches are distributed among these distances:
157 7 0.03
158 112 0.46
159 115 0.48
160 7 0.03
ACGTcount: A:0.21, C:0.31, G:0.29, T:0.19
Consensus pattern (158 bp):
GCTTAGACTGGGAATCAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCACTCAA
CCGGCCGAAGAGGCAGAATGCGCAAACCGGGGATCAGCCCGGTCCCCTCTGCGTGCTGCGGATCC
TGCTGCCACAACCCTCGATCCAGCTGGG
Found at i:34661637 original size:158 final size:157
Alignment explanation
Indices: 34661136--34661637 Score: 451
Period size: 158 Copynumber: 3.2 Consensus size: 157
34661126 ACTCCGTATG
* * * *
34661136 CTTAGACAT-GGAATGAACTCCGTATGCCTATGCCAACCCACGGAACGAGTGTGTGGGCGCTCAG
1 CTTAGA-ATGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA-
* * * * * * ***
34661200 TCC-GCCGGAGAGGCAGAATGTGCAAGCCAGGGATCGGGCCGATCCCCCCTGCGTGCTATTGATC
64 ACCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATC-GCCCGGTCCCCTCTGCGTGCTGCGGATC
* * * *
34661264 CTACTGCTGCAACCCTCAGTCTGATCCGAT
128 CTGCTGCCGCAACCCTCGGTCTGGTCCGAT
* * * * * * * *
34661294 CTTAGACTGGGAATCAACTCCGTATGCGTAAGTCAACCCATGAAACGAGCGTGCGGGCACTGAGC
1 CTTAGAATGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAAC
* * * *
34661359 CGGCCGAAGAGGCTTG-ATGCGCAAACCGGGGATCGACCTGGTCCCCCTCTGCGTGCTGTCGG-T
66 CGGCCGGAGAGGC-AGAATGCGCAAGCCGGGGATCG-CCCGGT-CCCCTCTGCGTGCTG-CGGAT
* * ** * **
34661422 -CTCGCTGCCACAACCCTCGATCCAG-CTGGGG
127 CCT-GCTGCCGCAACCCTCGGTCTGGTC-CGAT
* * * * *
34661453 CTTAGACAT-GGAATGAACTCCTTATGCCTAAGCCAACCCACGAAACGGGCGTACAGGTGCTCAA
1 CTTAGA-ATGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
* *
34661517 CCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGGTCCCTTCTGCGTGCTGCGGATCC
65 CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATC-GCCCGGTCCCCTCTGCGTGCTGCGGATCC
34661582 TGCTGCCGCAACCCTCGGTCTGGTCCGAT
129 TGCTGCCGCAACCCTCGGTCTGGTCCGAT
* *
34661611 CTTAGATTGGGAATGAACTCTGTATGC
1 CTTAGAATGGGAATGAACTCCGTATGC
34661638 TTAGACTGGG
Statistics
Matches: 265, Mismatches: 64, Indels: 30
0.74 0.18 0.08
Matches are distributed among these distances:
157 8 0.03
158 138 0.52
159 116 0.44
160 3 0.01
ACGTcount: A:0.21, C:0.30, G:0.29, T:0.20
Consensus pattern (157 bp):
CTTAGAATGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAAC
CGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGCCCGGTCCCCTCTGCGTGCTGCGGATCCTG
CTGCCGCAACCCTCGGTCTGGTCCGAT
Found at i:34661640 original size:26 final size:26
Alignment explanation
Indices: 34661611--34661663 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
34661601 CTGGTCCGAT
* *
34661611 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
34661637 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
34661663 C
1 C
34661664 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34661996 original size:26 final size:26
Alignment explanation
Indices: 34661955--34662007 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
34661945 CCGGTCCGAT
34661955 CTTAGACTGGAAATGAAATCTGTATG
1 CTTAGACTGGAAATGAAATCTGTATG
** *
34661981 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGAAATGAAATCTGTATG
34662007 C
1 C
34662008 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGAAATGAAATCTGTATG
Found at i:34663008 original size:159 final size:158
Alignment explanation
Indices: 34662677--34663142 Score: 375
Period size: 159 Copynumber: 2.9 Consensus size: 158
34662667 AACTCCGTAT
* * * * **
34662677 GCTTACACATGGAATAAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGGGCTCAG
1 GCTTAGACATGGAATAAACTCCGTATGCATAAGCCAACCCACGAAACAAGCGTGCGGGCACTCAG
* * * * * * *
34662742 TCGGCCGGAGAGGCAGAAAGTGCAAGTCGGGATCGACCCGATCCCCCACTGTGTGCTGTCGATCC
66 CCGACCGAAGAGGCAGAAAGCGCAAGCCGGGATCGACCCGATCCCCCACTATGTGCTATCGATCC
* *
34662807 TACTGCCACAACCCTCGATCCGATCTGA
131 CACTGCCACAACCCTCGATCCGAGCTGA
* * * * *
34662835 TCTTAGAC-TGGGAATCAACTCCGTATGCATAAGTCAACCCACGAAACAAGCGTGCGGGCATTGA
1 GCTTAGACAT-GGAATAAACTCCGTATGCATAAGCCAACCCACGAAACAAGCGTGCGGGCACTCA
* * *** * *
34662899 GCCGACCGAAGAGGCATAATGCGCAAGCCGGGGATCGGTTCGATCCCCCTCTATGTGTTATCGAT
65 GCCGACCGAAGAGGCAGAAAGCGCAAGCC-GGGATCGACCCGATCCCCCACTATGTGCTATCGAT
* *
34662964 CCCGCTGCCACAACCCTCGGTCCG-GCTGGA
129 CCCACTGCCACAACCCTCGATCCGAGCT-GA
* * * * * * ** * **
34662994 GCTTAGACATGGAATGAACTCCCTATACCTAAGCCAACCGATGAAACGGGTGTGCGGGGGCTCAG
1 GCTTAGACATGGAATAAACTCCGTATGCATAAGCCAACCCACGAAACAAGCGTGCGGGCACTCAG
* * ** * * ** * *
34663059 CCGGCCGGAA-AGGCAGAATA-CGTAAGTTGGGGATCGGCCCGATCCCCC-TTGCGTGCTGTTGA
66 CCGACC-GAAGAGGCAGAA-AGCGCAAG-CCGGGATCGACCCGATCCCCCACTATGTGCTATCGA
* *
34663121 TCCTACTGTCACAACCCTCGAT
128 TCCCACTGCCACAACCCTCGAT
34663143 TCGGTCCAAT
Statistics
Matches: 239, Mismatches: 62, Indels: 14
0.76 0.20 0.04
Matches are distributed among these distances:
157 1 0.00
158 101 0.42
159 133 0.56
160 4 0.02
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATAAACTCCGTATGCATAAGCCAACCCACGAAACAAGCGTGCGGGCACTCAG
CCGACCGAAGAGGCAGAAAGCGCAAGCCGGGATCGACCCGATCCCCCACTATGTGCTATCGATCC
CACTGCCACAACCCTCGATCCGAGCTGA
Found at i:34663550 original size:26 final size:26
Alignment explanation
Indices: 34663521--34663573 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34663511 TCGGTCCGAT
34663521 CTTAGAC-TAGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
34663547 CTTAGACATGGAATGAGCTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
34663573 C
1 C
34663574 CTAAGCCAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:34664057 original size:26 final size:26
Alignment explanation
Indices: 34664021--34664073 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34664011 CTGGTCTGAT
*
34664021 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
34664047 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
34664073 C
1 C
34664074 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34670659 original size:26 final size:26
Alignment explanation
Indices: 34670621--34670673 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34670611 GGCTCAAAAT
*
34670621 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAACGAACTCTGTATG
34670647 CTTAGACAT-GGAACGAACTCTGTATG
1 CTTAGAC-TGGGAACGAACTCTGTATG
34670673 C
1 C
34670674 CTAAACCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAACGAACTCTGTATG
Found at i:34671162 original size:26 final size:26
Alignment explanation
Indices: 34671121--34671173 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34671111 CTGGTTCAAT
34671121 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
34671147 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
34671173 C
1 C
34671174 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:34671630 original size:158 final size:156
Alignment explanation
Indices: 34671331--34671831 Score: 411
Period size: 158 Copynumber: 3.2 Consensus size: 156
34671321 CTGGCTAGGG
* * * * * * *
34671331 CTTAGACATGGAATGAAC-ACTGTATGTCTAAGCTAACCCATGAAACGAGCGTGCGGGTGCTCGG
1 CTTAGAC-TGGAATGAACTTC-GTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
* * * * * * * * * *
34671395 TC-GACCGGAGAGGCAGAATGTGCAAGTCGGGGATCAGCCCAATCCCCCCTACGTGCTACCAATC
64 CCAG-CCAGAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCGATCCCTCCTGCGTGCTATCGATC
*
34671459 CTGCTG-TATCAACCCTTAATTCGGTTCGAT
128 CT-CTGCCA-CAACCCTTAATTCGGTTCGAT
* * * * * *
34671489 ATTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAATGAGCGTACGGGTGCTGAGC
1 CTTAGACT-GGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGC
* * * * *
34671554 CGGCCAGAGAGGCATAATGCGCAAGTCGAGGATCGGCCCGATCCC-CTCTGCGTGCTATCGGT-C
65 CAGCCAGAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCGATCCCTC-CTGCGTGCTATCGATCC
** * * * **
34671617 TCATTGCCACAACCCTCGATTTGGCTGGGG
129 TC--TGCCACAACCCTTAATTCGGTTCGAT
* * * * *
34671647 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTGCGGGCGCTCAGC
1 CTTAGAC-TGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGC
* *
34671712 CAGTCAGAGAGGCAGAATGCGTAAGCCGAGGATCAGCCCGATCCCTCCTGCGTGCTATCGATCCT
65 CAGCCAGAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCGATCCCTCCTGCGTGCTATCGATCCT
*** *
34671777 GCTGCCACAACCC-TCGGTCTGGTCCGAT
130 -CTGCCACAACCCTTAATTC-GGTTCGAT
*
34671805 CTTAGACAAGGAATGAACTTCGTATGC
1 CTTAGAC-TGGAATGAACTTCGTATGC
34671832 TTAGACTGGG
Statistics
Matches: 272, Mismatches: 59, Indels: 24
0.77 0.17 0.07
Matches are distributed among these distances:
156 1 0.00
157 5 0.02
158 258 0.95
159 7 0.03
160 1 0.00
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (156 bp):
CTTAGACTGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGCC
AGCCAGAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCGATCCCTCCTGCGTGCTATCGATCCTC
TGCCACAACCCTTAATTCGGTTCGAT
Found at i:34671834 original size:26 final size:26
Alignment explanation
Indices: 34671805--34671857 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
34671795 CTGGTCCGAT
*
34671805 CTTAGACAAGGAATGAACTTCGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
** *
34671831 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
34671857 C
1 C
34671858 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACAAGGAATGAACTCCGTATG
Found at i:34671953 original size:684 final size:682
Alignment explanation
Indices: 34670646--34672817 Score: 3014
Period size: 684 Copynumber: 3.2 Consensus size: 682
34670636 AACTCTGTAT
* * ** *
34670646 GCTTAGACATGGAACGAACTCTGTATGCCTAAACCAACCCACGAAACGAGCGTGCGGGCACTCAG
1 GCTTAGACATGGAACGAACACTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCGG
** * * * * * ** * ** *
34670711 TCGGTCGGAGAGGCAAAATGAGCAAGCCGGGGATCAGCCTAGTCCCCCTTGTGTGTTGTCGATCC
66 TCGACCGGAGAGGCAGAATGTGCAAGCCGGGGATCAGCCCAATCCCCCCTACGTGCTACCAATCC
* ** * *
34670776 TACGCCG-T-AACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAAC-TCTGTATGCCTAAGTC
131 T--GCTGTTCAACCCTCAATCCGGTTCGATATTAGACTGGGAATGAACTTC-GTATGCCTAAGTC
* * * * * * ** * *
34670838 AACCCACGAAACGAGCGTGCAGGCACTGAGCCAGCCAGAGACACATAATGCGTAAGTCGGGGATC
193 AACCCATGAAATGAGCGTACGGGCGCTGAGCCGGCCAGAGAGGCATAATGCGCAAGTCGAGGATC
** ** * * * * ** *
34670903 AACCCGATCCCCCTCTATGTGCTGTCGGTCCCGTAGCCACTGCCCTCGATCTAGCTGGGGCTTAG
258 GGCCCGAT-CCCCTCTGCGTGCTATCGGTCTCATTGCCACAACCCTCGATCTGGCTGGGGCTTAG
* * ** * * * *
34670968 ACATGGAATGAACTCCTTATGCCTAAGCCAACCTACGAAATAGGTGTACGGGCATTCAGTCGGTC
322 ACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTGCGGGCACTCAGCCAGTC
* * * * * * * *
34671033 -GAAGAAGCAGAATGTGCAAGTCGAGGATCAACCCGATCCCCCCGGCATGCTGTCGATCCTGCTG
387 AG-AGAGGCAGAATGCGCAAGCCGAGGATCAGCCCGATCCCTCCTGCGTGCTATCGATCCTGCTG
** * * * *
34671097 CCGTAACCCTCGGTCTGGTTCAATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGGATG
451 CCACAACCCTCGGTCTGGTCCGATCTTAGACAAGGAATGAACTTCGTATGCTTAGACTGGGGATG
* *
34671162 AACTCCGTATGCCTAAGTCAACCCACAAAACAAGCGTGTGGGCACTTAGCCAATCGAAGAGGCCG
516 AACTCCGTATGCCTAAGTCAACCCACAAAACAAGCGTGTGGGCGCTTAGCCAGTCGAAGAGGCCG
*
34671227 GATAGAGAGGCATAATGTGCAAGTTAGGGATCAACCCGATCCCCCTTTGCGTGCTACCGATCCTA
581 GATAGAGAGGCATAATGTGCAAGTTAGGGATCAACCCGATCCCCCTTTGCGTGCTACCGATCCTG
34671292 CTACCGGTCTTGCTACCACAACCCTCAGTCTGGCTAGG
646 CTACCGGTCTTGCTACCACAACCCTCAGTC-GGCTAGG
* * * *
34671330 GCTTAGACATGGAATGAACACTGTATGTCTAAGCTAACCCATGAAACGAGCGTGCGGGTGCTCGG
1 GCTTAGACATGGAACGAACACTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCGG
*
34671395 TCGACCGGAGAGGCAGAATGTGCAAGTCGGGGATCAGCCCAATCCCCCCTACGTGCTACCAATCC
66 TCGACCGGAGAGGCAGAATGTGCAAGCCGGGGATCAGCCCAATCCCCCCTACGTGCTACCAATCC
* *
34671460 TGCTGTATCAACCCTTAATTCGGTTCGATATTAGACTGGGAATGAACTTCGTATGCCTAAGTCAA
131 TGCTGT-TCAACCCTCAATCCGGTTCGATATTAGACTGGGAATGAACTTCGTATGCCTAAGTCAA
*
34671525 CCCATGAAATGAGCGTACGGGTGCTGAGCCGGCCAGAGAGGCATAATGCGCAAGTCGAGGATCGG
195 CCCATGAAATGAGCGTACGGGCGCTGAGCCGGCCAGAGAGGCATAATGCGCAAGTCGAGGATCGG
*
34671590 CCCGATCCCCTCTGCGTGCTATCGGTCTCATTGCCACAACCCTCGATTTGGCTGGGGCTTAGACA
260 CCCGATCCCCTCTGCGTGCTATCGGTCTCATTGCCACAACCCTCGATCTGGCTGGGGCTTAGACA
*
34671655 TGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTGCGGGCGCTCAGCCAGTCAGA
325 TGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTGCGGGCACTCAGCCAGTCAGA
*
34671720 GAGGCAGAATGCGTAAGCCGAGGATCAGCCCGATCCCTCCTGCGTGCTATCGATCCTGCTGCCAC
390 GAGGCAGAATGCGCAAGCCGAGGATCAGCCCGATCCCTCCTGCGTGCTATCGATCCTGCTGCCAC
34671785 AACCCTCGGTCTGGTCCGATCTTAGACAAGGAATGAACTTCGTATGCTTAGACTGGGGATGAACT
455 AACCCTCGGTCTGGTCCGATCTTAGACAAGGAATGAACTTCGTATGCTTAGACTGGGGATGAACT
34671850 CCGTATGCCTAAGTCAACCCACAAAACAAGCGTGTGGGCGCTTAGCCAGTCGAAGAGGCCGGATA
520 CCGTATGCCTAAGTCAACCCACAAAACAAGCGTGTGGGCGCTTAGCCAGTCGAAGAGGCCGGATA
34671915 GAGAGGCATAATGTGCAAGTTAGGGATCAACCCGATCCCCCTTTGCGTGCTACCGATCCTGCTAC
585 GAGAGGCATAATGTGCAAGTTAGGGATCAACCCGATCCCCCTTTGCGTGCTACCGATCCTGCTAC
34671980 CGGTCTTGCTACCACAACCCTCAGTCCGGCTAGG
650 CGGTCTTGCTACCACAACCCTCAGT-CGGCTAGG
* * *
34672014 GCTTAGACATGGAATGAACACTGTATGCCTAAGCTAACCCATGAAACGAGCGTGCGGGTGCTCGG
1 GCTTAGACATGGAACGAACACTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCGG
* *
34672079 TCGACCGGAGAGGCAGAATGTGCAAGCCGGGGATCAGCCCGATCCCTCCTACGTGCTACCAATCC
66 TCGACCGGAGAGGCAGAATGTGCAAGCCGGGGATCAGCCCAATCCCCCCTACGTGCTACCAATCC
* * *
34672144 TGCTATCGCAACCCTCAATCCAGTTCGATATTAGACTGGGAATGAACTTCGTATGCCTAAGTCAA
131 TGCTGT-TCAACCCTCAATCCGGTTCGATATTAGACTGGGAATGAACTTCGTATGCCTAAGTCAA
*
34672209 CCCATGAAATGAGCGTACGGGCGCTGAGCCGGCCAGAGAGGCATAATGCGCAAGCCGAGGATCGG
195 CCCATGAAATGAGCGTACGGGCGCTGAGCCGGCCAGAGAGGCATAATGCGCAAGTCGAGGATCGG
34672274 CCCGATCCCCTCTGCGTGCTATCGGTCTCATTGCCACAACCCTCGATCTGGCTGGGGCTTAGACA
260 CCCGATCCCCTCTGCGTGCTATCGGTCTCATTGCCACAACCCTCGATCTGGCTGGGGCTTAGACA
* *
34672339 TGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCAGGCACTCAGCCAGTCAGA
325 TGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTGCGGGCACTCAGCCAGTCAGA
*
34672404 GAGGCAGAATGCGCAAGCCGAGGATCAGCCCGGTCCCTCCTGCGTGCTATCGATCCTGCTGCCAC
390 GAGGCAGAATGCGCAAGCCGAGGATCAGCCCGATCCCTCCTGCGTGCTATCGATCCTGCTGCCAC
34672469 AACCCTCGGTCTGGTCCGATCTTAGACAAGGAATGAACTTCGTATGCTTAGACTGGGGATGAACT
455 AACCCTCGGTCTGGTCCGATCTTAGACAAGGAATGAACTTCGTATGCTTAGACTGGGGATGAACT
** * * * * * * * *
34672534 CCGTATGCCTAAGTCAACCCATGAAACGAGCGTGTAGGTGCTCAGCC-GACCAGAGAGGCCCGAC
520 CCGTATGCCTAAGTCAACCCACAAAACAAGCGTGTGGGCGCTTAGCCAGTCGA-AGAGGCCGGAT
* * * * *** * *
34672598 GGAAAGGCATAATTTGTAAGCCGGGGATCAGCCCGAT-CCCCTTCTACGTGCTACCGATCCTGCT
584 AGAGAGGCATAATGTGCAAGTTAGGGATCAACCCGATCCCCCTT-TGCGTGCTACCGATCCTGCT
* * * * *
34672662 GCCGGTCCTGCTTCCACAACCCTCGGTCGGCTGGG
648 ACCGGTCTTGCTACCACAACCCTCAGTCGGCTAGG
* **
34672697 GCTTAGACATGGAACGAAC-TTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTC-
1 GCTTAGACATGGAACGAACACT-GTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCG
** * * * **
34672760 AACTGATCGGAGAGTCAGAATGCGCAAGCC-GGGATC-GACCCTGTCCCCCCTACGTGCT
65 GTC-GACCGGAGAGGCAGAATGTGCAAGCCGGGGATCAG-CCCAATCCCCCCTACGTGCT
34672818 GTCGATCTTG
Statistics
Matches: 1341, Mismatches: 136, Indels: 24
0.89 0.09 0.02
Matches are distributed among these distances:
681 1 0.00
682 28 0.02
683 94 0.07
684 1109 0.83
685 107 0.08
686 2 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (682 bp):
GCTTAGACATGGAACGAACACTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCGG
TCGACCGGAGAGGCAGAATGTGCAAGCCGGGGATCAGCCCAATCCCCCCTACGTGCTACCAATCC
TGCTGTTCAACCCTCAATCCGGTTCGATATTAGACTGGGAATGAACTTCGTATGCCTAAGTCAAC
CCATGAAATGAGCGTACGGGCGCTGAGCCGGCCAGAGAGGCATAATGCGCAAGTCGAGGATCGGC
CCGATCCCCTCTGCGTGCTATCGGTCTCATTGCCACAACCCTCGATCTGGCTGGGGCTTAGACAT
GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTGCGGGCACTCAGCCAGTCAGAG
AGGCAGAATGCGCAAGCCGAGGATCAGCCCGATCCCTCCTGCGTGCTATCGATCCTGCTGCCACA
ACCCTCGGTCTGGTCCGATCTTAGACAAGGAATGAACTTCGTATGCTTAGACTGGGGATGAACTC
CGTATGCCTAAGTCAACCCACAAAACAAGCGTGTGGGCGCTTAGCCAGTCGAAGAGGCCGGATAG
AGAGGCATAATGTGCAAGTTAGGGATCAACCCGATCCCCCTTTGCGTGCTACCGATCCTGCTACC
GGTCTTGCTACCACAACCCTCAGTCGGCTAGG
Found at i:34672262 original size:158 final size:156
Alignment explanation
Indices: 34672015--34672515 Score: 492
Period size: 158 Copynumber: 3.2 Consensus size: 156
34672005 CCGGCTAGGG
* *
34672015 CTTAGACATGGAATGAAC-ACTGTATGCCTAAGCTAACCCATGAAACGAGCGTGCGGGTGCTCG-
1 CTTAGAC-TGGAATGAACTTC-GTATGCCTAAGC-AACCCATGAAACGAGCGTGCGGGCGCT-GA
* * * * * * * *
34672078 GTCGACCGGAGAGGCAGAATGTGCAAGCCGGGGATCAGCCCGATCCCTCCTACGTGCTACCAATC
62 GCCGGCCAGAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCGATCCCTCCTGCGTGCTATCGATC
* * **
34672143 CTGCTATCGCAACCCTCAATCCAGTTCGAT
127 CTGCTATCACAACCCTCGATCTGGTTCGAT
* * *
34672173 ATTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAATGAGCGTACGGGCGCTGAGC
1 CTTAGACT-GGAATGAACTTCGTATGCCTAAG-CAACCCATGAAACGAGCGTGCGGGCGCTGAGC
* * *
34672238 CGGCCAGAGAGGCATAATGCGCAAGCCGAGGATCGGCCCGATCCC-CTCTGCGTGCTATCGGT-C
64 CGGCCAGAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCGATCCCTC-CTGCGTGCTATCGATCC
* * **
34672301 T-C-ATTGCCACAACCCTCGATCTGGCTGGGG
128 TGCTA-T--CACAACCCTCGATCTGGTTCGAT
* * * * * * *
34672331 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCAGGCACTCAGC
1 CTTAGAC-TGGAATGAACTTCGTATGCCTAAG-CAACCCATGAAACGAGCGTGCGGGCGCTGAGC
* * *
34672396 CAGTCAGAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCGGTCCCTCCTGCGTGCTATCGATCCT
64 CGGCCAGAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCGATCCCTCCTGCGTGCTATCGATCCT
** * *
34672461 GCTGCCACAACCCTCGGTCTGGTCCGAT
129 GCTATCACAACCCTCGATCTGGTTCGAT
*
34672489 CTTAGACAAGGAATGAACTTCGTATGC
1 CTTAGAC-TGGAATGAACTTCGTATGC
34672516 TTAGACTGGG
Statistics
Matches: 278, Mismatches: 52, Indels: 26
0.78 0.15 0.07
Matches are distributed among these distances:
155 1 0.00
156 2 0.01
157 5 0.02
158 263 0.95
159 6 0.02
160 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (156 bp):
CTTAGACTGGAATGAACTTCGTATGCCTAAGCAACCCATGAAACGAGCGTGCGGGCGCTGAGCCG
GCCAGAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCGATCCCTCCTGCGTGCTATCGATCCTGC
TATCACAACCCTCGATCTGGTTCGAT
Found at i:34672518 original size:26 final size:26
Alignment explanation
Indices: 34672489--34672541 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
34672479 CTGGTCCGAT
*
34672489 CTTAGACAAGGAATGAACTTCGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
** *
34672515 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
34672541 C
1 C
34672542 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACAAGGAATGAACTCCGTATG
Found at i:34672910 original size:26 final size:26
Alignment explanation
Indices: 34672872--34672924 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34672862 CTGATCTGAT
34672872 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
34672898 CTTAGAC-GTGGAATGAACTCCGTATG
1 CTTAGACTG-GGAATGAACTCCATATG
34672924 C
1 C
34672925 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:34673386 original size:158 final size:157
Alignment explanation
Indices: 34672898--34673392 Score: 489
Period size: 158 Copynumber: 3.1 Consensus size: 157
34672888 ACTCCATATG
* * * *
34672898 CTTAGACGTGG-AATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTTAG
1 CTTAGAC-TGGAAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGTGTAC-GGCGCTCAG
* * * ** *
34672962 CCGGTCGGAGAGGTAGAATGCACAAGTCGGGGATCGGCTCGGTCCCCCCTGCGCACTGTCGATCT
64 CCGGCCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCTCGGTCCCCCCTGCGTGCTGTCGATCC
* * *
34673027 TGCTACCACAACCCTTGATCCAG-TCTGAT
129 TGCTACCACAACACTCGGTCCAGTTC-GAT
* ** * * * *
34673056 CTTAGACTAGG-AATGAACTCCATATGCCTAA-CTCAACTCACGAAACAAGCGTGCAGGCGTTGA
1 CTTAGACT-GGAAATGAACTCCATATGCCTAAGC-CAACCCACGAAATGAGTGTAC-GGCGCTCA
* * * * *
34673119 GCCGACCGGAGAGGCATAATCCGCAAG-CTGAGGATCGGCTCGGTCCCCCTCTGCGTGCTGTCGG
63 GCCGGCCGGAGAGGCAGAATGCGCAAGTC-GGGGATCGGCTCGGTCCCCC-CTGCGTGCTGTCGA
** * * * *
34673183 TCCCACTACCACAACTCTCGGTCCGGTTGGGT
126 TCCTGCTACCACAACACTCGGTCCAGTTCGAT
* * * *
34673215 CTTAGACAT-GAAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGTGTACGGTGCTCAGC
1 CTTAGAC-TGGAAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGTGTACGGCGCTCAGC
* *
34673279 CGGCCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGGTCCCCCCTGCATGCTGTCGATCCT
65 CGGCCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCTCGGTCCCCCCTGCGTGCTGTCGATCCT
** **
34673344 GCTGTCGTAACACTCGGTCCAGTTCGAT
130 GCTACCACAACACTCGGTCCAGTTCGAT
34673372 CTTAGACTGGGAAATGAACTC
1 CTTAGACT-GGAAATGAACTC
34673393 TGTATGCTTA
Statistics
Matches: 272, Mismatches: 54, Indels: 22
0.78 0.16 0.06
Matches are distributed among these distances:
156 1 0.00
157 44 0.16
158 151 0.56
159 73 0.27
160 3 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (157 bp):
CTTAGACTGGAAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGTGTACGGCGCTCAGCC
GGCCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCTCGGTCCCCCCTGCGTGCTGTCGATCCTG
CTACCACAACACTCGGTCCAGTTCGAT
Found at i:34673423 original size:26 final size:27
Alignment explanation
Indices: 34673372--34673425 Score: 83
Period size: 26 Copynumber: 2.0 Consensus size: 27
34673362 CCAGTTCGAT
*
34673372 CTTAGACTGGGAAATGAACTCTGTATG
1 CTTAGACTGGGAAATGAACTCCGTATG
*
34673399 CTTAGACTGGG-GATGAACTCCGTATG
1 CTTAGACTGGGAAATGAACTCCGTATG
34673425 C
1 C
34673426 CTAAGGCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 14 0.56
27 11 0.44
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.28
Consensus pattern (27 bp):
CTTAGACTGGGAAATGAACTCCGTATG
Found at i:34674131 original size:26 final size:26
Alignment explanation
Indices: 34674093--34674145 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
34674083 GGCTCAAAAT
34674093 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
34674119 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
34674145 C
1 C
34674146 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34674420 original size:159 final size:156
Alignment explanation
Indices: 34674119--34674621 Score: 539
Period size: 159 Copynumber: 3.2 Consensus size: 156
34674109 ACTCCGTATG
*
34674119 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * *
34674184 CGACCGGAGAGGCAGAATGCACAAGCCAGGGATCGGCCCGTTTCCCCCCTGCGTGCTATTGATCC
66 CGACCGGAGAGGCAGAATGCACAAGCC-GGGATCGGCCCG-ATCCCCACTG-GTGCTGTCGATCC
** **
34674249 TAATGCTGCAACCCTCGATCCGGTCTGAT
128 TGCTGCCACAACCCTCGATCCGGTCTGAT
* * * * * *
34674278 CTTAGA-ATAGGAATGAACTCTGTATGCATAAGTCAACCCATGAAGCGAGCGTACGGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * * * *
34674342 CTGGCCGAAGAGGCATAATGCACAAGCCGGCGATCGGCCCGATCCTTCTCTGTGTGCTGTCGGTC
65 CCGACCGGAGAGGCAGAATGCACAAGCCGG-GATCGGCCCGATCC-CCACTG-GTGCTGTCGATC
* * *
34674407 CCGCTACCACAACCCTCGGTCCGG-CTG-T
127 CTGCTGCCACAACCCTCGATCCGGTCTGAT
* * * *
34674435 GGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCAGGCGCTCA
1 --CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
**
34674500 GCCGACCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCGATCCCCCAC-GGATGCTGTCGAT
64 GCCGACCGGAGAGGCAGAATGCACAAGCC-GGGATCGGCCCGAT-CCCCACTGG-TGCTGTCGAT
* * *
34674564 CTTGCTGCCACAACCCTCGATCCAGTTTGAT
126 CCTGCTGCCACAACCCTCGATCCGGTCTGAT
*
34674595 CTTAGAC-TGTGAATGAACTCTGTATGC
1 CTTAGACATG-GAATGAACTCCGTATGC
34674622 TTAGACTAGG
Statistics
Matches: 280, Mismatches: 52, Indels: 25
0.78 0.15 0.07
Matches are distributed among these distances:
157 4 0.01
158 62 0.22
159 207 0.74
160 7 0.03
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (156 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
CGACCGGAGAGGCAGAATGCACAAGCCGGGATCGGCCCGATCCCCACTGGTGCTGTCGATCCTGC
TGCCACAACCCTCGATCCGGTCTGAT
Found at i:34675349 original size:159 final size:157
Alignment explanation
Indices: 34674996--34675368 Score: 446
Period size: 158 Copynumber: 2.4 Consensus size: 157
34674986 CTCCATATGT
* * *
34674996 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCATTCAGTC
1 TTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAGCC
* * * *
34675061 GGCCAAAGAGGCAGAATGCGCAAGCTGGGGACTGGCCCGGTCCCCCCTACGTGTTGTCGATCCTG
65 GACCAAAGAGGCAGAATGCGCAAGCCGAGGACTGGCCCGATCCCCCCTACGTGTTGTCGATCCTG
*
34675126 CTACCACAACCCTCAGTTCAGTCTGATC
130 CTACCACAACCCTCAGTTCAGTCTGAGC
* * * * * *
34675154 TTAGACTGGGAATAAACCCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTGAGCC
1 TTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAGCC
** * * *
34675219 GACCGGAGAGGTATAATGCGCAAGCCGAGGA-TCGGCCCGATCCCCCTCTGCGTGTTGTCGATCC
65 GACCAAAGAGGCAGAATGCGCAAGCCGAGGACT-GGCCCGATCCCCC-CTACGTGTTGTCGATCC
* *
34675283 TGCTGCCACAACCCTCAG-TCTAG-CTGGGGC
128 TGCTACCACAACCCTCAGTTC-AGTCT-GAGC
* * *
34675313 TTAGACGTGAAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGG
1 TTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGG
34675369 TGCTCAACCG
Statistics
Matches: 181, Mismatches: 28, Indels: 11
0.82 0.13 0.05
Matches are distributed among these distances:
157 2 0.01
158 94 0.52
159 84 0.46
160 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.19
Consensus pattern (157 bp):
TTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAGCCG
ACCAAAGAGGCAGAATGCGCAAGCCGAGGACTGGCCCGATCCCCCCTACGTGTTGTCGATCCTGC
TACCACAACCCTCAGTTCAGTCTGAGC
Found at i:34675385 original size:159 final size:157
Alignment explanation
Indices: 34674996--34675447 Score: 489
Period size: 159 Copynumber: 2.8 Consensus size: 157
34674986 CTCCATATGT
* ** *
34674996 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCATTCAGTC
1 TTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCC
** * * *
34675061 GGCCAAAGAGGCAGAATGCGCAAGCTGGGGA-CTGGCCCGGTCCCCCCTACGTGTTGTCGATCCT
65 GGCCGGAGAGGCAGAATGCGCAAGCCGAGGATC-GGCCCGGTCCCCCCTGCGTGTTGTCGATCCT
* *
34675125 GCTACCACAACCCTCAGTTCAGTCTGATC
129 GCTGCCACAACCCTCAGTTCAGTCTGAGC
* * * * *
34675154 TTAGACTGGGAATAAACCCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTGAGCC
1 TTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCC
* * * *
34675219 GACCGGAGAGGTATAATGCGCAAGCCGAGGATCGGCCCGATCCCCCTCTGCGTGTTGTCGATCCT
65 GGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGGTCCCCC-CTGCGTGTTGTCGATCCT
*
34675284 GCTGCCACAACCCTCAG-TCTAG-CTGGGGC
129 GCTGCCACAACCCTCAGTTC-AGTCT-GAGC
* * * * *
34675313 TTAGACGTGAAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAACC
1 TTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCC
* * * * * * *
34675378 GGTCGGAGAGGCAGAATGCACAAGCC-AGGGATCGACTCGGTCCCCCCCTGTGTGCTATCGATCC
65 GGCCGGAGAGGCAGAATGCGCAAGCCGA-GGATCGGCCCGGT-CCCCCCTGCGTGTTGTCGATCC
*
34675442 TACTGC
128 TGCTGC
34675448 TAGTCCTGCT
Statistics
Matches: 243, Mismatches: 43, Indels: 15
0.81 0.14 0.05
Matches are distributed among these distances:
157 1 0.00
158 95 0.39
159 141 0.58
160 6 0.02
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (157 bp):
TTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCG
GCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGGTCCCCCCTGCGTGTTGTCGATCCTGC
TGCCACAACCCTCAGTTCAGTCTGAGC
Found at i:34675512 original size:26 final size:26
Alignment explanation
Indices: 34675483--34675535 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
34675473 CCGGTGTGAT
34675483 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
34675509 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
34675535 C
1 C
34675536 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:34675733 original size:514 final size:508
Alignment explanation
Indices: 34674768--34677098 Score: 1931
Period size: 514 Copynumber: 4.6 Consensus size: 508
34674758 TCGCTGTTGG
* * * * *
34674768 TCCTGCTACCACAACCCTCAGTATGGTTGGGGCTTAGACATGGAATGAACTCTGTATGCTTAAGC
1 TCCTGCTGCCACAACCCTCAGTCTAGCTGGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGC
* * * ** * *
34674833 CAACCCATGAAATGAGCGTGCGGGTGCTCAACCGGTTAGAGAGGCAGAATGCACAAGTCGGGGAT
66 CAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGAT
* * * * *
34674898 CGACCTGGTCCCCCCTGTGTGTTGTCGATCCTACTGCTGGTCCTGCTGCCGCAACCCTCAATCTG
131 CGACCTGGTCCCCCCTGTGTGCTGTCGATCCT-CTGCTAGTCCTGCTG--TCAACCCTCGATCCG
**** * *
34674963 GTCC-A-CTCTAGACTGGGGGCAAACTCCATATGTTTAGACATGGAATGAACTCCGTATGCCTAA
193 GTCCGATCT-TAGACTGGGAATGAACTCCGTATGCTTAGAC-TGGAATGAACTCCGTATGCCTAA
* * ** **
34675026 GCCAACCCACGAAATGAGCGTACGGGCATTCAGTCGGCCAAAGAGGCAGAATGCGCAAGCTGGGG
256 GCCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCGGAGAGGCAGAATGCGCAAGCTGGGG
* * * * * *
34675091 ACTGGCCCGGTCCCCCCTACGTGTTGTCGATCCTGCTACCACAACCCTCAGT-TCAGTCTGATCT
321 ACCGACCCGGTCCCCCC-ACGTGCTGTCGATCCTACTGCCACAACCCTCAGTCTGA-TCTGATCT
* * * * *
34675155 TAGACTGGGAATAAACCCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTGAGCCG
384 TAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAGCCG
* * *
34675220 ACCGGAGAGGTATAATGCGCAAGCCGAGGATCGGCCCGATCCCCCTCTGCGTGTTGTCGA
449 ACCGGAGAGGCATAATGCGCAAGCCGAGGATCGGCCCGATCCCCCTCTGCATGCTGTCGA
* *
34675280 TCCTGCTGCCACAACCCTCAGTCTAGCTGGGGCTTAGACGTGAAATGAACTCTGTATGCCTAAGC
1 TCCTGCTGCCACAACCCTCAGTCTAGCTGGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGC
* * *
34675345 CAACCCACGAAACGAGCGTGCGGGTGCTCAACCGGTCGGAGAGGCAGAATGCACAAGCCAGGGAT
66 CAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGAT
* *
34675410 CGA-CTCGGTCCCCCCCTGTGTGCTATCGATCCTACTGCTAGTCCTGCTGTCACAACCCTCGGTC
131 CGACCT-GGT-CCCCCCTGTGTGCTGTCGATCCT-CTGCTAGTCCTGCTGT--CAACCCTCGATC
**
34675474 CGGTGTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTA
191 CGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC-TGGAATGAACTCCGTATGCCTA
* ** * * *
34675539 AGCCAACACACGAAACGAGCGTATGGGCGCTCAGTCGACCGGAGAGGTAGAATGCGCAAGGTGGG
255 AGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCGGAGAGGCAGAATGCGCAAGCTGGG
** * ** *
34675604 GACCGGTCCGGTCCCCCCAGCATGCTGTCGATCCTACTGCCGTAACCCTCGGTCTGATCTGATCT
320 GACCGACCCGGTCCCCCCA-CGTGCTGTCGATCCTACTGCCACAACCCTCAGTCTGATCTGATCT
*
34675669 TAGGCTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAGCCG
384 TAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAGCCG
* * * * * * *
34675734 GCCGGAGAGGCATAATGCGCAAGTCGGGGATCAGCCCGGTTCCCCTCTGCATGCTG-CTGG
449 ACCGGAGAGGCATAATGCGCAAGCCGAGGATCGGCCCGATCCCCCTCTGCATGCTGTC-GA
* * * * ** *
34675794 TCCCGCTGCCACAACCCTCGGTCTGGCTGGGGGTTAGACATGGAATGAACTCCCTATGACTAAGC
1 TCCTGCTGCCACAACCCTCAGTCTAGCTGGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGC
* * * * * ** * * *
34675859 CAACCCATGAAACGGGCATGGGGGCACTCAGTCGGCCGGAGAGGTAGAATGTGCAAGCCGGGGAT
66 CAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGAT
* * *
34675924 C-AGCCCGGTCCCCCCTGCGTGCTGTCGAT-C-CTGCTA---C--C-GT-AACCCTCGATCCAGT
131 CGA-CCTGGTCCCCCCTGTGTGCTGTCGATCCTCTGCTAGTCCTGCTGTCAACCCTCGATCCGGT
* * *
34675979 CCGATCTTAGAATGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTC
195 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT-GGAATGAACTCCGTATGCCTAAGCC
* * * ** *
34676044 AACCCATGAAACGAGCGTGCGGGCACTCAGCCGGCCGGAGAGGCAG-ATGCGCAAGCCAGGGATC
259 AACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCGGAGAGGCAGAATGCGCAAGCTGGGGACC
* * * * ** * **
34676108 GACCCGATCCCCATCTAGGTGCTGTCGGTCCCGCTGCCACAACCCTCAGTCTG-GCTGGGGCTTA
324 GACCCGGTCCCC--CCACGTGCTGTCGATCCTACTGCCACAACCCTCAGTCTGATCT-GATCTTA
* * * * * * * * * *
34676172 GGCAT-GGAATGAACTCCCTATGGCTAAGCCAACCCACGTAACGGGCATGCGGGCGCTAACCCAA
386 GAC-TGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAGCCGA
** * * * * * * * * **
34676236 CCGGAGAGATAGAATGCGTAAGTCGGGGATTGACCCGGTCCCCC-CTACATGCTACCGA
450 CCGGAGAGGCATAATGCGCAAGCCGAGGATCGGCCCGATCCCCCTCTGCATGCTGTCGA
* * * *
34676294 TCCTGCTACCGCAACCCTCTGTCCAGTCTGATCTTAGAGTGGGAATGAACTCTGTATGCTTAGAC
1 TCCTGCTGCCACAA-CC-C--T-CA----G-TC-TAG-CTGGG---G----CT-TA-G---ACA-
** *
34676359 TGGAGATGAACTCTGTATGCCTAAATCAACCCACGAAACGAGCGTGTGGGCGCTCAACCGACCAG
41 TGGA-ATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTC-A---ACC--
* * * * **
34676424 AAAGGCCGATCGGAGAGGCAGAATACGTAAGCCGGGGATCGATCTGGTCCCTCCTGTGTGCTACC
99 ----G--G-TCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCTGGTCCCCCCTGTGTGCTGTC
*
34676489 GATCCTGCTGCTGGTCCTGCTGTCGTAA-CC-C--T-C-G---G----T-G-C---G---G---T
157 GATCCT-CTGCTAGTCCTGCTGTC--AACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACT
* *
34676530 CC-AAT-CTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCA
219 CCGTATGCTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGC-
* * *
34676593 G-TCAGAT-GGTCGGAGAGGCAGAATGCGCAAG-TCGGGGATCGACCCAGTCCCCCTCACGTGCT
283 GCTCAG-TCGGCCGGAGAGGCAGAATGCGCAAGCT-GGGGACCGACCCGGTCCCCC-CACGTGCT
* * * * * *
34676655 GTTGATCCTACTGTCACAACCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTCCATATGCC
345 GTCGATCCTACTGCCACAACCCTCAGTCTGATCTGATCTTAGACTGGGAATGAACTCCATATGCC
* * *
34676720 TAAGTCAACCCACGAAACGAGCTTCCGAGG-GCTGAGCC-AGCCAGAGAGGCATAATGCGCAAGC
410 TAAGTCAACCCACGAAACGAGCGTGCG-GGCGCTGAGCCGA-CCGGAGAGGCATAATGCGCAAGC
* * * * *
34676783 C-AGGGATCGGCCCGATCCTCCTCCGCGTGCTGTAGG
473 CGA-GGATCGGCCCGATCCCCCTCTGCATGCTGTCGA
* * * * * **
34676819 TCCCGCTGCCACAATCCTCGGTC-CGACTGGGGCTTAGAAATGGAATGAACTCCCTATGCCTAAG
1 TCCTGCTGCCACAACCCTCAGTCTAG-CTGGGGCTTAGACATGGAATGAACTCTGTATGCCTAAG
* * * *
34676883 CCAACCCACGAAACGGGCGTGCGGGCGCTCAACCGGTCGGAGAGGCAGAGTTCGCAAGACGGGGA
65 CCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGA
* * * *
34676948 TCGGCCTGGTCCCCTCTGCGTGCTGTCGAT-C-CTG-T--T-GT-C-GT-AACCCTCGATCCGGT
130 TCGACCTGGTCCCCCCTGTGTGCTGTCGATCCTCTGCTAGTCCTGCTGTCAACCCTCGATCCGGT
* *
34677004 CCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGTATGAACTCCGTATGCCTAAGCC
195 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT-GGAATGAACTCCGTATGCCTAAGCC
* *
34677069 AACCCACGAAACAAGCATGCGGGCGCTCAG
259 AACCCACGAAACGAGCGTGCGGGCGCTCAG
34677099 CCAGCAGGAG
Statistics
Matches: 1452, Mismatches: 259, Indels: 227
0.75 0.13 0.12
Matches are distributed among these distances:
474 2 0.00
475 2 0.00
476 1 0.00
477 2 0.00
478 2 0.00
479 2 0.00
480 2 0.00
482 1 0.00
483 3 0.00
485 1 0.00
486 48 0.03
487 2 0.00
488 1 0.00
489 2 0.00
492 1 0.00
495 4 0.00
498 4 0.00
499 46 0.03
500 59 0.04
501 284 0.20
502 4 0.00
504 4 0.00
505 4 0.00
506 2 0.00
507 1 0.00
509 1 0.00
510 9 0.01
511 4 0.00
512 128 0.09
513 76 0.05
514 373 0.26
515 8 0.01
516 1 0.00
519 1 0.00
520 3 0.00
521 2 0.00
523 4 0.00
524 180 0.12
525 59 0.04
526 42 0.03
527 4 0.00
530 2 0.00
533 1 0.00
536 1 0.00
537 1 0.00
538 2 0.00
539 46 0.03
540 2 0.00
542 6 0.00
545 2 0.00
546 1 0.00
547 2 0.00
548 2 0.00
549 1 0.00
550 2 0.00
551 2 0.00
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.20
Consensus pattern (508 bp):
TCCTGCTGCCACAACCCTCAGTCTAGCTGGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGC
CAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGAT
CGACCTGGTCCCCCCTGTGTGCTGTCGATCCTCTGCTAGTCCTGCTGTCAACCCTCGATCCGGTC
CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGAATGAACTCCGTATGCCTAAGCCAA
CCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCGGAGAGGCAGAATGCGCAAGCTGGGGACCGA
CCCGGTCCCCCCACGTGCTGTCGATCCTACTGCCACAACCCTCAGTCTGATCTGATCTTAGACTG
GGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAGCCGACCGGAG
AGGCATAATGCGCAAGCCGAGGATCGGCCCGATCCCCCTCTGCATGCTGTCGA
Found at i:34675863 original size:159 final size:158
Alignment explanation
Indices: 34675508--34675954 Score: 506
Period size: 159 Copynumber: 2.8 Consensus size: 158
34675498 AACTCCGTAT
* * **
34675508 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACACACGAAACGAGCGTATGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * *
34675573 TCGACCGGAGAGGTAGAATGCGCAAGGT-GGGGACCGGTCCGGTCCCCCCAGCATGCTGTCGATC
66 TCGGCCGGAGAGGTAGAATGCGCAA-GTCGGGGATCAGCCCGGTCCCCCCTGCATGCTGTCGATC
* ** *
34675637 CTACTGCCGTAACCCTCGGTCTGATCTGA
130 CCACTGCCACAACCCTCGGTCTGAGCTGA
* * * *
34675666 TCTTAGGC-TGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * *
34675730 GCCGGCCGGAGAGGCATAATGCGCAAGTCGGGGATCAGCCCGGTTCCCCTCTGCATGCTG-CTGG
65 GTCGGCCGGAGAGGTAGAATGCGCAAGTCGGGGATCAGCCCGG-TCCCCCCTGCATGCTGTC-GA
* *
34675794 TCCCGCTGCCACAACCCTCGGTCTG-GCTGGG
128 TCCCACTGCCACAACCCTCGGTCTGAGCT-GA
* * * * * * * *
34675825 GGTTAGACATGGAATGAACTCCCTATGACTAAGCCAACCCATGAAACGGGCATGGGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * *
34675890 TCGGCCGGAGAGGTAGAATGTGCAAGCCGGGGATCAGCCCGGTCCCCCCTGCGTGCTGTCGATCC
66 TCGGCCGGAGAGGTAGAATGCGCAAGTCGGGGATCAGCCCGGTCCCCCCTGCATGCTGTCGATCC
34675955 TGCTACCGTA
Statistics
Matches: 238, Mismatches: 44, Indels: 14
0.80 0.15 0.05
Matches are distributed among these distances:
157 3 0.01
158 108 0.45
159 126 0.53
160 1 0.00
ACGTcount: A:0.22, C:0.30, G:0.31, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
TCGGCCGGAGAGGTAGAATGCGCAAGTCGGGGATCAGCCCGGTCCCCCCTGCATGCTGTCGATCC
CACTGCCACAACCCTCGGTCTGAGCTGA
Found at i:34676013 original size:26 final size:26
Alignment explanation
Indices: 34675984--34676036 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34675974 CCAGTCCGAT
34675984 CTTAGAATGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
* *
34676010 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
34676036 C
1 C
34676037 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Found at i:34676781 original size:158 final size:155
Alignment explanation
Indices: 34676503--34677035 Score: 491
Period size: 158 Copynumber: 3.4 Consensus size: 155
34676493 CTGCTGCTGG
** *
34676503 TCCTGCTGTCGTAACCCTCGGTGCGGTCCAATCTTAGACT-GGAATGAACTCCGTATGCCTAAGC
1 TCCTGCTGTCACAACCCTCGGTCCGGTCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGC
* ** *
34676567 CAACCCATGAAACGAGCGT-GCGGGCAGTCAGATGGTCGGAGAGGCAGAATGCGCAAGTCGGGGA
66 CAACCCACGAAACGAGCGTCG-GGGC--TCAGCCGGTCGGAGAGGCAGAATGCGCAAGACGGGGA
* * *
34676631 TCGACCCAGTCCCCCTCACGTGCTGTTGA
128 TCGGCCC-GTCCCCCTCGCGTGCTGTAGA
* ** * *
34676660 TCCTACTGTCACAACCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTCCATATGCCTAAGT
1 TCCTGCTGTCACAACCCTCGGTCCGGTCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGC
* * * * * * * *
34676725 CAACCCACGAAACGAGCTTCCGAGGGCTGAGCCAGCCAGAGAGGCATAATGCGCAAGCCAGGGAT
66 CAACCCACGAAACGAGCGT-CG-GGGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAGACGGGGAT
* *
34676790 CGGCCCGATCCTCCTCCGCGTGCTGTAGG
129 CGGCCCG-TCCCCCT-CGCGTGCTGTAGA
* * * * **** * *
34676819 TCCCGCTGCCACAATCCTCGGTCC-GACTGGGGCTTAGA-AATGGAATGAACTCCCTATGCCTAA
1 TCCTGCTGTCACAACCCTCGGTCCGGTC-CAATCTTAGACTA-GGAATGAACTCCGTATGCCTAA
* * * *
34676882 GCCAACCCACGAAACGGGCGTGCGGGCGCTCAACCGGTCGGAGAGGCAGAGTTCGCAAGACGGGG
64 GCCAACCCACGAAACGAGCGT-CGGG-GCTCAGCCGGTCGGAGAGGCAGAATGCGCAAGACGGGG
* *
34676947 ATCGGCCTGGT-CCCCTCTGCGTGCTGTCGA
127 ATCGGCC-CGTCCCCCTC-GCGTGCTGTAGA
* ** * *
34676977 TCCTGTTGTCGTAACCCTCGATCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGC
1 TCCTGCTGTCACAACCCTCGGTCCGGTCCAATCTTAGACTAGGAATGAACTCCGTATGC
34677036 TTAGACTGGG
Statistics
Matches: 296, Mismatches: 68, Indels: 23
0.76 0.18 0.06
Matches are distributed among these distances:
157 36 0.12
158 138 0.47
159 116 0.39
160 6 0.02
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (155 bp):
TCCTGCTGTCACAACCCTCGGTCCGGTCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGC
CAACCCACGAAACGAGCGTCGGGGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAGACGGGGATCG
GCCCGTCCCCCTCGCGTGCTGTAGA
Found at i:34676926 original size:159 final size:157
Alignment explanation
Indices: 34676535--34676979 Score: 443
Period size: 159 Copynumber: 2.8 Consensus size: 157
34676525 GCGGTCCAAT
* * *
34676535 CTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCAG-TCAGA
1 CTTAGAATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGC-GCTCA-A
* * * * *
34676599 -TGGTCGGAGAGGCAGAATGCGCAAGTCGGGGATCGACCC-AGTCCCC-CTCACGTGCTGTTGAT
64 CCGGTCGGAGAGGCAGAATGCGCAAGACGGGGATCGGCCCGA-TCCCCTC-CGCGTGCTGTAGAT
* * * *
34676661 CCTACTGTCACAACCCTCGGTCCGGTCTGAT
127 CCCACTGCCACAACCCTCGGTCCGGACTGAG
* * * * * *
34676692 CTTAGACTAGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCTTCCGAGG-GCTGAG
1 CTTAGAAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCG-GGCGCTCAA
* * * * * * *
34676756 CCAGCCAGAGAGGCATAATGCGCAAGCCAGGGATCGGCCCGATCCTCCTCCGCGTGCTGTAGGTC
64 CCGGTCGGAGAGGCAGAATGCGCAAGACGGGGATCGGCCCGATCC-CCTCCGCGTGCTGTAGATC
* * *
34676821 CCGCTGCCACAATCCTCGGTCC-GACTGGGG
128 CCACTGCCACAACCCTCGGTCCGGACT-GAG
* *
34676851 CTTAGAAATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAAC
1 CTTAG-AATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAAC
* * * * * *
34676916 CGGTCGGAGAGGCAGAGTTCGCAAGACGGGGATCGGCCTGGTCCCCTCTGCGTGCTGTCGATCC
65 CGGTCGGAGAGGCAGAATGCGCAAGACGGGGATCGGCCCGATCCCCTCCGCGTGCTGTAGATCC
34676980 TGTTGTCGTA
Statistics
Matches: 232, Mismatches: 46, Indels: 19
0.78 0.15 0.06
Matches are distributed among these distances:
157 9 0.04
158 99 0.43
159 121 0.52
160 3 0.01
ACGTcount: A:0.23, C:0.31, G:0.29, T:0.18
Consensus pattern (157 bp):
CTTAGAATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACC
GGTCGGAGAGGCAGAATGCGCAAGACGGGGATCGGCCCGATCCCCTCCGCGTGCTGTAGATCCCA
CTGCCACAACCCTCGGTCCGGACTGAG
Found at i:34677038 original size:26 final size:26
Alignment explanation
Indices: 34677009--34677061 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
34676999 CCGGTCCAAT
34677009 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
34677035 CTTAGACTGGGTATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
34677061 C
1 C
34677062 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34677256 original size:26 final size:26
Alignment explanation
Indices: 34677218--34677270 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34677208 TCGGTCTGAT
*
34677218 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
34677244 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
34677270 C
1 C
34677271 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:34677748 original size:26 final size:26
Alignment explanation
Indices: 34677719--34677769 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
34677709 CCAGTCCGAT
*
34677719 CTTAGATTGGAAATGAACTCCGTATA
1 CTTAGACTGGAAATGAACTCCGTATA
**
34677745 CTTAGACTGGGGATGAACTCCGTAT
1 CTTAGACTGGAAATGAACTCCGTAT
34677770 GCCTAAGTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATA
Found at i:34678055 original size:342 final size:343
Alignment explanation
Indices: 34677402--34678149 Score: 898
Period size: 342 Copynumber: 2.2 Consensus size: 343
34677392 CTGATCTGAT
* * * * * *
34677402 CTTAGGCTGGGAATGAACTCCATATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCGCTGAGC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCACTCAGC
* * * *
34677467 CAGCCGGAGAGGCATAATGCGCAAGTCGGGGATCAGCCTGGTTCCCCTCTGCATGCTGCTGGTCT
66 CAGCCGGAGAGGCATAATGCGCAAGCCAGGGATCAGCCTCGATCCCCTCTGCATGCTGCTGGTCT
* * *
34677532 CGCTGCCACAACCCTCGGTCAAGCTGGGGGTTAGACATGGAATGAACTCCCTATGACTAAGCCAA
131 CGCTGCCACAACACTCAGTCAAGCTGGGGCTTAGACATGGAATGAACTCCCTATGACTAAGCCAA
* * * * ** * * ** *
34677597 CCCATGAAATGGGCATGGGGGCACTCAGTCAGCCGGAGAGGTAGAATGTGCAAGCCGGGGATCAA
196 CCCACGAAACGGGCATGCGGGCACTAACCCAACCGAAGAGACAGAATGCGCAAGCCGGGGATCAA
* * ** * * *
34677662 CCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGCCATAACCCTTGGTCCAGTCCGATCTTAGATT
261 CCCGGTCCCCCCTACATGCTACCGATCCTGCTACCACAACCCTTGGTCCAGTCCGATCTTAGAGT
34677727 GGAAATGAACTCCGTATA
326 GGAAATGAACTCCGTATA
*
34677745 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATAAAACGAGCGTGCGGGCACTCAGC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCACTCAGC
* * *
34677810 CGGCCGGAGAGGCA-GATGCGCAAGCCAGGGATC-GACC-CGATCCCCATCTAG-GTGCTG-TCG
66 CAGCCGGAGAGGCATAATGCGCAAGCCAGGGATCAG-CCTCGATCCCC-TCT-GCATGCTGCT-G
** * *
34677870 GTC-CTGCTGCCACAACACTCAGTCTGGCTGGGGCTTAGGCATGGAATGAACTCCCTATGGCTAA
127 GTCTC-GCTGCCACAACACTCAGTCAAGCTGGGGCTTAGACATGGAATGAACTCCCTATGACTAA
* ** *
34677934 GCCAACCCACGTAACGGGCATGCGGGTGCTAACCCAACCGAAGAGACAGAATGCGTAAGCCGGGG
191 GCCAACCCACGAAACGGGCATGCGGGCACTAACCCAACCGAAGAGACAGAATGCGCAAGCCGGGG
** * *
34677999 ATTGACCCGGTCCCCCCTACATGCTACCGATCCTGCTACCGCAACCCTCT-GTCCAGTCTGATCT
256 ATCAACCCGGTCCCCCCTACATGCTACCGATCCTGCTACCACAACCCT-TGGTCCAGTCCGATCT
* * *
34678063 TAGAGTGGGAATGAACTCTGTATG
320 TAGAGTGGAAATGAACTCCGTATA
* * * * *
34678087 CTTAGACTGGAGATGAACTCTGTATGCCTAAATCAACCCACGAAACGAGCGTGTGGGCACTCA
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCACTCA
34678150 ACCGACCAGA
Statistics
Matches: 343, Mismatches: 56, Indels: 13
0.83 0.14 0.03
Matches are distributed among these distances:
341 9 0.03
342 261 0.76
343 73 0.21
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.20
Consensus pattern (343 bp):
CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCACTCAGC
CAGCCGGAGAGGCATAATGCGCAAGCCAGGGATCAGCCTCGATCCCCTCTGCATGCTGCTGGTCT
CGCTGCCACAACACTCAGTCAAGCTGGGGCTTAGACATGGAATGAACTCCCTATGACTAAGCCAA
CCCACGAAACGGGCATGCGGGCACTAACCCAACCGAAGAGACAGAATGCGCAAGCCGGGGATCAA
CCCGGTCCCCCCTACATGCTACCGATCCTGCTACCACAACCCTTGGTCCAGTCCGATCTTAGAGT
GGAAATGAACTCCGTATA
Found at i:34678800 original size:26 final size:26
Alignment explanation
Indices: 34678771--34678823 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
34678761 CCGGTCCAAT
34678771 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
34678797 CTTAGACTGGGTATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
34678823 C
1 C
34678824 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34678951 original size:710 final size:710
Alignment explanation
Indices: 34677745--34679230 Score: 1679
Period size: 710 Copynumber: 2.1 Consensus size: 710
34677735 ACTCCGTATA
* **
34677745 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATAAAACGAGCGTGCGGGCACTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGC
* * * * * *
34677810 CGGCCGGAGAGGCAGATGCGCAAGCCAGGGATCGACCCGATCCCCATCTAGGTGCTGTCGGTCCT
66 CAGCCAGAGAGGCAAATGCACAAGCCAGGGATCGACCCGATCCCCATCTAGGTGCTGTAGGTCCC
* * ** *
34677875 GCTGCCACAACACTCAGTCTGGCTGGGGCTTAGGCATGGAATGAACTCCCTATGGCTAAGCCAAC
131 GCTGCCACAACACTCAGTCCGACTGGGGCTTAGAAATGGAATGAACTCCCTATGCCTAAGCCAAC
* ** * * *
34677940 CCACGTAACGGGCATGCGGGTGCTAACCCAACCGAAGAGACAGAATGCGTAAGCCGGGGATTGAC
196 CCACGAAACGGGCATGCGGACGCTAACCCAACCGAAGAGACAGAATGCGCAAGACGGGGATCGAC
** *
34678005 CCGGTCCCCCCTACATGCTACCGATCCTGCTACCGCAACCCTCTGTCCAGTCTGATCTTAGAGTG
261 CCGGTCCCCCCTACATGCTACCGATCCTGCTACCGCAACCCTCTGTCCAGTCCAATCTTAGACTG
* * * *
34678070 GGAATGAACTCTGTATGCTTAGACTGGAGATGAACTCTGTATGCCTAAATCAACCCACGAAACGA
326 GGAATGAACTCCGTATGCTTAGACTGGAGATGAACTCCGTATGCCTAAACCAACCCACGAAACAA
* * * * * * **
34678135 GCGTGTGGGCACTCAACCGACCAGAAAGGCCAATCGGAGAGGTAGAATACGTAAGCCGGGGATCG
391 GCATGCGGGCACTCAACCGACCAGAAAGACCAATCAGAGAGGCAGAATACGTAAACCGAAGATCG
* * * * * * *
34678200 ATCCGGTCCTTCCTGTGTGCTACCGATCTTGCTGCTGGTCCTGCTGTCGTAACCCTCGGTGCGGT
456 ATCCGGTCCCTCCTGCGTGCTACCGATCCTACTGCTGGTCCTACTCTCGTAACCCTCGGTGCGAT
* * * **
34678265 CCAATCTTAGACTGGGAATGAAC-TCTGTATGCTTATATATGGAATTAACTCTGTATGCCTAAGC
521 CCAATCTTAGACTGGGAATGAACTTC-GTATGCTTAGACATGGAATAAACTCCATATGCCTAAGC
* * * * * * *
34678329 CAACCCATGAAAAGAGCGTGCGGGCAG-TCAGA-TGGTTGGAGAGGCAGAATGCGCAAGTCGGGG
585 CAACCCACGAAAAGAGCATGCAGG-AGTTCA-ACCGATCGGAGAGGCAAAATGCGCAAGTCGGGG
* * ** * * **
34678392 ATCGACCC-AGT-CT-CCCTCACGTGCTGTTGATCCTACTGTCACAACCCTCGGTCCGGTCTGAT
648 ACCGACCCGA-TCCTGCCCT-ACGTGCTATCAATCCTACTATCACAACCCTCAGTCCCATCTGAT
* * * * * * *
34678454 CTTAGACTAGGAATGAACTCCATATGCCTAAGTCAACTCACGAAACGAGCTTTCGAGG-GCTGAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCG-GGCACTCAG
* * *
34678518 CCAGCCAGAGAGGCATAATGCACAAGCCAGGGATTGGCCCGATCCTCC-TC-CGCGTGCTGTAGG
65 CCAGCCAGAGAGGCA-AATGCACAAGCCAGGGATCGACCCGATCC-CCATCTAG-GTGCTGTAGG
*
34678581 TCCCGCTGCCACAATC-CTCGGTCCGACTGGGGCTTAGAAATGGAATGAACTCCCTATGCCTAAG
127 TCCCGCTGCCACAA-CACTCAGTCCGACTGGGGCTTAGAAATGGAATGAACTCCCTATGCCTAAG
* *** * * * *
34678645 CCAACCCACGAAACGGGCGTGCGGACGCTCAA-CCGGTCGGAGAGGCAGAGTTCGCAAGACGGGG
191 CCAACCCACGAAACGGGCATGCGGACGCT-AACCCAACCGAAGAGACAGAATGCGCAAGACGGGG
* * * * * ** * ** * *
34678709 ATCGGCCTGGTCCCCTCTGCGTGCTGTCGATCCTGTTGTCGTAACCCTC-GATCCGGTCCAATCT
255 ATCGACCCGGTCCCCCCTACATGCTACCGATCCTGCTACCGCAACCCTCTG-TCCAGTCCAATCT
*
34678773 TAGACTGGGAATGAACTCCGTATGCTTAGACTGG-GTATGAACTCCGTATGCCTAAGCCAACCCA
319 TAGACTGGGAATGAACTCCGTATGCTTAGACTGGAG-ATGAACTCCGTATGCCTAAACCAACCCA
* * * * * * * *
34678837 CGAAACAAGCATGCGGGCGCTCAGCC-AGCAGGAGAGATCGATCAGAGAGGCAGAATGCGTAAAT
383 CGAAACAAGCATGCGGGCACTCAACCGACCA-GAAAGACCAATCAGAGAGGCAGAATACGTAAAC
* * * *
34678901 CGAAGATC-AGCTCGGTCCCTCCTGCGTGTTGCCGATCCTATTGCTGGTCCTACTCTCGTAACCC
447 CGAAGATCGATC-CGGTCCCTCCTGCGTGCTACCGATCCTACTGCTGGTCCTACTCTCGTAACCC
* *
34678965 TCGGTTCGATCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACATGGAATAAACTCCATA
511 TCGGTGCGATCCAATCTTAGACTGGGAATGAACTTCGTATGCTTAGACATGGAATAAACTCCATA
* *
34679030 TGCCTAAGCCAACCCACGAAACGAGCATGCAGGTGTTCAACCGATCGGAGAGGCAAAATGCGCAA
576 TGCCTAAGCCAACCCACGAAAAGAGCATGCAGGAGTTCAACCGATCGGAGAGGCAAAATGCGCAA
*
34679095 GTCGGGGACCGACCCGATCCTGCCCTGCGTGCTATCAATCCTACTATCACAACCCTCAGTCCCAT
641 GTCGGGGACCGACCCGATCCTGCCCTACGTGCTATCAATCCTACTATCACAACCCTCAGTCCCAT
34679160 CTGAT
706 CTGAT
* * * * * *
34679165 CTTAGATTGGGAGTGAACTCCGCATGCCTAAGTCAACCCACGAAATGAGCGTACGGGCACTAAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGC
34679230 C
66 C
34679231 GATCGGATAG
Statistics
Matches: 638, Mismatches: 122, Indels: 32
0.81 0.15 0.04
Matches are distributed among these distances:
709 74 0.12
710 462 0.72
711 98 0.15
712 4 0.01
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (710 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGC
CAGCCAGAGAGGCAAATGCACAAGCCAGGGATCGACCCGATCCCCATCTAGGTGCTGTAGGTCCC
GCTGCCACAACACTCAGTCCGACTGGGGCTTAGAAATGGAATGAACTCCCTATGCCTAAGCCAAC
CCACGAAACGGGCATGCGGACGCTAACCCAACCGAAGAGACAGAATGCGCAAGACGGGGATCGAC
CCGGTCCCCCCTACATGCTACCGATCCTGCTACCGCAACCCTCTGTCCAGTCCAATCTTAGACTG
GGAATGAACTCCGTATGCTTAGACTGGAGATGAACTCCGTATGCCTAAACCAACCCACGAAACAA
GCATGCGGGCACTCAACCGACCAGAAAGACCAATCAGAGAGGCAGAATACGTAAACCGAAGATCG
ATCCGGTCCCTCCTGCGTGCTACCGATCCTACTGCTGGTCCTACTCTCGTAACCCTCGGTGCGAT
CCAATCTTAGACTGGGAATGAACTTCGTATGCTTAGACATGGAATAAACTCCATATGCCTAAGCC
AACCCACGAAAAGAGCATGCAGGAGTTCAACCGATCGGAGAGGCAAAATGCGCAAGTCGGGGACC
GACCCGATCCTGCCCTACGTGCTATCAATCCTACTATCACAACCCTCAGTCCCATCTGAT
Found at i:34679031 original size:26 final size:26
Alignment explanation
Indices: 34678980--34679032 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
34678970 TCGATCCGAT
* * *
34678980 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATAAACTCCATATG
34679006 CTTAGACAT-GGAATAAACTCCATATG
1 CTTAGAC-TGGGAATAAACTCCATATG
34679032 C
1 C
34679033 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCATATG
Found at i:34679476 original size:26 final size:26
Alignment explanation
Indices: 34679447--34679499 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34679437 CTGGTCCGAT
*
34679447 CTTAGACTGGTAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
34679473 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
34679499 C
1 C
34679500 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34679708 original size:26 final size:26
Alignment explanation
Indices: 34679657--34679709 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
34679647 CCGGTCCGAT
**
34679657 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
34679683 CTTAGAC-GTGGAATGAACTCCATATG
1 CTTAGACTG-GGAATGAACTCCATATG
34679709 C
1 C
34679710 CGTAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:34680102 original size:158 final size:159
Alignment explanation
Indices: 34679829--34680354 Score: 383
Period size: 158 Copynumber: 3.3 Consensus size: 159
34679819 GGTCCTGCTA
* * * *
34679829 CCGTAACCCTCGGTCCGGTTCGATCTTAGACTGGGAATGACCTCCGTATGCCTAAGCCAACCAAG
1 CCGTAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAAC
* * * * **
34679894 GAAATGAGCGTACGGGCGCTCAGCCGGTCGGAGAGATAAATTGCGTAAGCC-AGGGATCGACCCA
66 AAAACGAGCGTACGGGCGCTCAGCAGGTCGAAGAGATAAATTGCACAAGCCGA-GGATCGACCCA
34679958 GTCC-CCCCTGCGTGCTGTCGATCCTACTG
130 GTCCGCCCCTGCGTGCTGTCGATCCTACTG
* * * * *
34679987 CCGTAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAATTTCGTATGCCTAAGTCAACCCAC
1 CCGTAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAAC
* * * *
34680052 AAAACGAGTGTACGGGTGTTGAGCAGGTCGAAGAGGCAT-AA-TGCACAAGCCGAGGATCGACCC
66 AAAACGAGCGTACGGGCGCTCAGCAGGTCGAAGA-G-ATAAATTGCACAAGCCGAGGATCGACCC
* * ** **
34680115 GGTCCGCCTCTGCGTGCTACCGATCCCGCTG
129 AGTCCGCCCCTGCGTGCTGTCGATCCTACTG
** * * ** *
34680146 CCACAACCCTCCA-TCCAG-CTGGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAAGC
1 CCGTAACCCT-CAGTCCGGTC-CGATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAA-C
* * * * * * * * * * *
34680208 C-ACGAAACGAGCATGCGGGCACTCAAC-CGACTGAAAAGGTAGAA-TGCGCAAGCC-AGGGATT
62 CAACAAAACGAGCGTACGGGCGCTCAGCAGGTC-GAAGAGATA-AATTGCACAAGCCGA-GGATC
* * * * * * *
34680269 GGCTCGGTCC-CCCCTGCATGCTGCCGATCTTGCTG
124 GACCCAGTCCGCCCCTGCGTGCTGTCGATCCTACTG
* * * * *
34680304 CCGTAACCCTCGGTCAGGTCTGACCTTAGACTGGGAATGAACTTCGTATGC
1 CCGTAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
34680355 TTAGACTAGG
Statistics
Matches: 285, Mismatches: 68, Indels: 30
0.74 0.18 0.08
Matches are distributed among these distances:
157 3 0.01
158 164 0.58
159 111 0.39
160 7 0.02
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (159 bp):
CCGTAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAAC
AAAACGAGCGTACGGGCGCTCAGCAGGTCGAAGAGATAAATTGCACAAGCCGAGGATCGACCCAG
TCCGCCCCTGCGTGCTGTCGATCCTACTG
Found at i:34680369 original size:26 final size:26
Alignment explanation
Indices: 34680328--34680380 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34680318 CAGGTCTGAC
*
34680328 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
34680354 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
34680380 C
1 C
34680381 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34680498 original size:184 final size:184
Alignment explanation
Indices: 34680169--34680502 Score: 420
Period size: 184 Copynumber: 1.8 Consensus size: 184
34680159 TCCAGCTGGG
* *
34680169 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAGCCACGAAACGAGCATGCGGGCACTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCAGGCACTCAA
* * ** *
34680234 CCGACTGAAAAGGTAGAATGCGCAAGCCAGGGATTGGCTCGGTCCCCCCTGCATGCTGCCGATCT
66 CCGACCGAAAAGGTAGAATGCACAAGCCAGGGACCGGCTCGGTCCCCCCTGCATGCTGCCGATCC
* *
34680299 TGCTGCCGTAACCCTCGGTCAGGTCTGACCTTAGACTGGGAATGAACTTCGTAT
131 TGCTACCGCAACCCTCGGTCAGGTCTGACCTTAGACTGGGAATGAACTTCGTAT
* * * * *
34680353 GCTTAGAC-TAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCAGGCACTCA
* * * * * * * **
34680417 ACTGGCCGGAGAGGTAGAATGCACAAGCCGGGGACCCG-TCTGGTCCCCCCTGCGTGCTGTTGAT
65 ACCGACCGAAAAGGTAGAATGCACAAGCCAGGGACCGGCTC-GGTCCCCCCTGCATGCTGCCGAT
*
34680481 CCTGCTACTGCAACCCTCGGTC
129 CCTGCTACCGCAACCCTCGGTC
34680503 CAGTCCAATC
Statistics
Matches: 124, Mismatches: 24, Indels: 4
0.82 0.16 0.03
Matches are distributed among these distances:
183 3 0.02
184 121 0.98
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.19
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCAGGCACTCAA
CCGACCGAAAAGGTAGAATGCACAAGCCAGGGACCGGCTCGGTCCCCCCTGCATGCTGCCGATCC
TGCTACCGCAACCCTCGGTCAGGTCTGACCTTAGACTGGGAATGAACTTCGTAT
Found at i:34680628 original size:501 final size:499
Alignment explanation
Indices: 34679853--34680948 Score: 1268
Period size: 501 Copynumber: 2.2 Consensus size: 499
34679843 CCGGTTCGAT
* * * * * *
34679853 CTTAGACTGGGAATGACCTCCGTATGCCTAAGCCAACCAAGGAAATGAGCGTACGGGCGCTCAGC
1 CTTAGACTGGG-ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAAC
* * * * *
34679918 CGGTCGGAGAGATAAATTGCGTAAGCCAGGGATCGACCCAGTCCCCCCTGCGTGCTGTCGATCCT
65 TGGCCGGAGAGGTAAA-TGCGCAAGCCAGGGACCGACCCAGTCCCCCCTGCGTGCTGTCGATCCT
* * ** * * * * *
34679983 ACTGCCGTAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAATTTCGTATGCCTAAGTCAAC
129 ACTACCGCAACCCTCAGTCCAGTCCAATCATAGACTGAGAATGAATCTCGTATGCATAAGTCAAC
* * * * *
34680048 CCACAAAACGAGTGTACGGGTGTTGAGCAGGTCGAAGAGGCATAATGCACAAGCCGAGGATCGAC
194 CCACAAAACGAGCGTACAGGTGCTGAGCAGATCGAAGAGGCATAATACACAAGCCGAGGATCGAC
* *
34680113 CCGGTCCGCCTCTGCGTGCTACCGATCCCGCTGCCACAACCCTCCATCC-AGCTGGGGCTTAGAC
259 CCGATCCCCCTCTGCGTGCTACCGATCCCGCTGCCACAACCCTCCATCCGA-CTGGGGCTTAGAC
* * *
34680177 ATGGAATGAACTCCCTATGCCTAAGCCAAGCCACGAAACGAGCATGCGGGCACTCAACCGACTGA
323 ATGGAATGAACTCCCTATGCCTAAGCCAAGCCACAAAACGAGCATGCAGGCACTCAACCGACCGA
* * * * * * * * *
34680242 AAAGGTAGAATGCGCAAGCCAG-GGATTGGCTCGGTCCCCCCTGCATGCTGCCGATCTTGCTGCC
388 AAAGGCAGAATGCGCAAGCC-GTGAATCGACCCGATCCCCCCTGCATGCTACCGATCCTGCTACC
* *
34680306 GTAACCCTCGGTCAGGTCTGACCTTAGACTGGGAATGAACTTCGTATG
452 GTAACCCTCGGTCAGATCTGACCTTAGACTGGGAATGAACTCCGTATG
* *
34680354 CTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAAC
1 CTTAGACT-GGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAAC
* * * ** *
34680419 TGGCCGGAGAGGTAGAATGCACAAGCCGGGGACCCG-TCTGGTCCCCCCTGCGTGCTGTTGATCC
65 TGGCCGGAGAGGTA-AATGCGCAAGCCAGGGA-CCGACCCAGTCCCCCCTGCGTGCTGTCGATCC
* * *
34680483 TGCTACTGCAACCCTCGGTCCAGTCCAATCATAGACTGAGAATGAA-CTCTGTATGCATAAGTCA
128 TACTACCGCAACCCTCAGTCCAGTCCAATCATAGACTGAGAATGAATCTC-GTATGCATAAGTCA
** * * * * *
34680547 ACCCATGAAACGAGCGTGCAGGTGCTGAGCCGATCGAAGAGGCATAATACGCAAGTCGGGGATCG
192 ACCCACAAAACGAGCGTACAGGTGCTGAGCAGATCGAAGAGGCATAATACACAAGCCGAGGATCG
* * ** * ***
34680612 GCTCGATCCCCCTCTGCGTGCTGTCGATCCCGCTGCCATAACCCTTGGTCCGACTGGGGCTTAGA
257 ACCCGATCCCCCTCTGCGTGCTACCGATCCCGCTGCCACAACCCTCCATCCGACTGGGGCTTAGA
* * * ** *
34680677 TATGGAATGAACTCCCTATGCCTAAGCCAAGCCACAAAACGGGCGTGCAGGTGCTCAGCCGACCG
322 CATGGAATGAACTCCCTATGCCTAAGCCAAGCCACAAAACGAGCATGCAGGCACTCAACCGACCG
* * * * *
34680742 GAGAGGCAGAATGCGCAAGTCGTGAATCGACCCGATCCCCCCTGCGTGCTACCGATCCTGCTACT
387 AAAAGGCAGAATGCGCAAGCCGTGAATCGACCCGATCCCCCCTGCATGCTACCGATCCTGCTACC
* * * *
34680807 GTAACCGTCGGTCCGATCTGATCTTAGACTTGGAATGAACTCCGTATG
452 GTAACCCTCGGTCAGATCTGACCTTAGACTGGGAATGAACTCCGTATG
* * * *
34680855 CTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCATGAAACAAGCGTACGGGCACTCAA-
1 CTTAGACT-GGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAAC
*
34680919 TCGGCTGG-GAGGTATAATGCGCAAGCCAGG
65 T-GGCCGGAGAGGTA-AATGCGCAAGCCAGG
34680949 ATTAAGCCCG
Statistics
Matches: 495, Mismatches: 93, Indels: 15
0.82 0.15 0.02
Matches are distributed among these distances:
500 23 0.05
501 464 0.94
502 8 0.02
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (499 bp):
CTTAGACTGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAACT
GGCCGGAGAGGTAAATGCGCAAGCCAGGGACCGACCCAGTCCCCCCTGCGTGCTGTCGATCCTAC
TACCGCAACCCTCAGTCCAGTCCAATCATAGACTGAGAATGAATCTCGTATGCATAAGTCAACCC
ACAAAACGAGCGTACAGGTGCTGAGCAGATCGAAGAGGCATAATACACAAGCCGAGGATCGACCC
GATCCCCCTCTGCGTGCTACCGATCCCGCTGCCACAACCCTCCATCCGACTGGGGCTTAGACATG
GAATGAACTCCCTATGCCTAAGCCAAGCCACAAAACGAGCATGCAGGCACTCAACCGACCGAAAA
GGCAGAATGCGCAAGCCGTGAATCGACCCGATCCCCCCTGCATGCTACCGATCCTGCTACCGTAA
CCCTCGGTCAGATCTGACCTTAGACTGGGAATGAACTCCGTATG
Found at i:34680858 original size:26 final size:26
Alignment explanation
Indices: 34680829--34680881 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
34680819 CCGATCTGAT
*
34680829 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
34680855 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
34680881 C
1 C
34680882 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34681208 original size:26 final size:26
Alignment explanation
Indices: 34681179--34681231 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
34681169 CCGGTCTGAT
34681179 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
34681205 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
34681231 C
1 C
34681232 CTATGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:34681894 original size:26 final size:26
Alignment explanation
Indices: 34681856--34681908 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
34681846 GGCTCAAACT
*
34681856 CTTAGACTGGGAATGATCTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
34681882 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
34681908 C
1 C
34681909 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:34682230 original size:26 final size:26
Alignment explanation
Indices: 34682201--34682251 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
34682191 AATCCGATCT
34682201 TAGACTGGGAATGAACTCCGTATGCA
1 TAGACTGGGAATGAACTCCGTATGCA
* *
34682227 TAGACTGGGGATGAACTCTGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
34682252 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.25
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCA
Found at i:34682434 original size:26 final size:26
Alignment explanation
Indices: 34682395--34682447 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
34682385 CCGGTCTGAT
34682395 CTTAGACTGAGAATGAACT-TCGTATG
1 CTTAGACTGAGAATGAACTCT-GTATG
34682421 CTTAGACATG-GAATGAACTCTGTATG
1 CTTAGAC-TGAGAATGAACTCTGTATG
34682447 C
1 C
34682448 CAAAGCAAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCTGTATG
Found at i:34682533 original size:196 final size:197
Alignment explanation
Indices: 34682171--34682551 Score: 509
Period size: 196 Copynumber: 1.9 Consensus size: 197
34682161 CACGATCTTG
*
34682171 CTGTCGCAACCCTCGATCCGAATCCGATCTTAGACTGGGAATGAACTCCGTATGCATAGACTGGG
1 CTGTCGCAACCCTCGATCCGAATCCGATCTTAGACTGAGAATGAACTCCGTATGCATAGACTGGG
* * * * *
34682236 GATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCTGGGCGGAGAG
66 AATGAACTCTGTATGCCAAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAACCGAGCGGAGAG
* ** * *
34682301 GTAGAATGCACAAGCCAGGGATCCATTCGGTCCCCCCTGCGTGCTACCGATCTTGTTGCTAGTCC
131 GCAGAATGCACAAGCCAGGGATCCACCCGATCCCCCCTGCATGCTACCGATCTTGTTGCTAGTCC
34682366 TA
196 TA
* * * * * *
34682368 CTGTCGGAACCCTCGGTCCG-GTCTGATCTTAGACTGAGAATGAACTTCGTATGCTTAGACAT-G
1 CTGTCGCAACCCTCGATCCGAATCCGATCTTAGACTGAGAATGAACTCCGTATGCATAGAC-TGG
* * *
34682431 GAATGAACTCTGTATGCCAAAG-CAAACCCACGAAACGAGTGTGCGGGCGCTCAACCGATCGGAG
65 GAATGAACTCTGTATGCCAAAGTC-AACCCACGAAACGAGCGTACGGGCGCTCAACCGAGCGGAG
* *
34682495 AGGCAGAATGCACAAGCTAGGGA-CCAGCCCGATCCCCCCTGCATGCTATCGATCTTG
129 AGGCAGAATGCACAAGCCAGGGATCCA-CCCGATCCCCCCTGCATGCTACCGATCTTG
34682552 CTACCGCAAC
Statistics
Matches: 159, Mismatches: 22, Indels: 7
0.85 0.12 0.04
Matches are distributed among these distances:
195 4 0.03
196 136 0.86
197 19 0.12
ACGTcount: A:0.25, C:0.28, G:0.27, T:0.21
Consensus pattern (197 bp):
CTGTCGCAACCCTCGATCCGAATCCGATCTTAGACTGAGAATGAACTCCGTATGCATAGACTGGG
AATGAACTCTGTATGCCAAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAACCGAGCGGAGAG
GCAGAATGCACAAGCCAGGGATCCACCCGATCCCCCCTGCATGCTACCGATCTTGTTGCTAGTCC
TA
Found at i:34682885 original size:26 final size:26
Alignment explanation
Indices: 34682856--34682906 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
34682846 CCGGTCCGAT
34682856 CTTAGACTGGGAATGAACTCCGTATA
1 CTTAGACTGGGAATGAACTCCGTATA
*
34682882 CTTAGACTGGGGATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
34682907 CCCTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATA
Found at i:34683592 original size:159 final size:157
Alignment explanation
Indices: 34683333--34683623 Score: 336
Period size: 159 Copynumber: 1.8 Consensus size: 157
34683323 TCAGCCGGCC
* * *
34683333 GGAGGGCAGAATGCTCAAGCCAGGGATCGGCTCGATCCCCCCCACGTGCTATTGATCCTGCTGCC
1 GGAGGGCAGAATGCACAAGCCAGGGATCGGCTCGATCCCCCCCACGTGCTATCGATCCTGATGCC
** * * * *
34683398 GTAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATAAACTTCGTATGCCTAAGTC-CACCCACG
66 ACAACCCTCGGTCCGGTCTGAGCTTAGACTGGGAATAAACTCCCTATGCCTAAG-CGAACCCACG
34683462 AAATGAACGTGCGGGCATTAAGCTAGCT
130 AAATGAACGTGCGGGCATTAAGCTAGCT
* * * * * * *
34683490 GGAGAGGCATAATGCACAAGCCGGGGATCGGCTCGGTCCCCCTCTATGTGCTGTCGGTCCTGATG
1 GGAG-GGCAGAATGCACAAGCCAGGGATCGGCTCGATCCCCC-CCACGTGCTATCGATCCTGATG
** * *
34683555 CCACAACCCTCGGTTTGG-CTGGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCGAACCC
64 CCACAACCCTCGGTCCGGTCT-GAGCTTAGAC-TGGGAATAAACTCCCTATGCCTAAGCGAACCC
34683618 ACGAAA
127 ACGAAA
34683624 CGGGCGTGTG
Statistics
Matches: 109, Mismatches: 20, Indels: 8
0.80 0.15 0.06
Matches are distributed among these distances:
157 4 0.04
158 36 0.33
159 68 0.62
160 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (157 bp):
GGAGGGCAGAATGCACAAGCCAGGGATCGGCTCGATCCCCCCCACGTGCTATCGATCCTGATGCC
ACAACCCTCGGTCCGGTCTGAGCTTAGACTGGGAATAAACTCCCTATGCCTAAGCGAACCCACGA
AATGAACGTGCGGGCATTAAGCTAGCT
Found at i:34683771 original size:26 final size:26
Alignment explanation
Indices: 34683742--34683794 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34683732 CCGATCTGAT
34683742 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
34683768 CTTAGACTTGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
34683794 C
1 C
34683795 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:34684528 original size:159 final size:158
Alignment explanation
Indices: 34684171--34684602 Score: 424
Period size: 159 Copynumber: 2.7 Consensus size: 158
34684161 AACTTCATAT
* * * *
34684171 GCTTAGACATGGAATGAACTCCGTACGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGAGCGTGCGGGCACTCAA
** * * * *
34684236 CCGGCCGAAGAGGCAGAATGTGCAAGCTGGGGACTGGCCCGATCCCCCCTGTATGCTTTCGATCC
66 CCGGCCGAAGAGGCAGAATGCACAAGCTGGGGACTGACCCGATCCCCCCTCTATCCTGTCGATCC
* * * * *
34684301 TACTGCCGCAACCCTCGATCCGGTTCGA
131 CACTACCACAACCCTCGATCCGGCTAGA
* * * ** *
34684329 TCTTAGAC-TGGGAATGAACTTCGTATGCCTATG-TCAACCCACGAAACGAGCGTGCGGGTGCTG
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCT-AACCCACGAAACGAGCGTGCGGGCACTC
* * * *
34684392 AACTGGCCGGAGAGGCATAATGCACAAGCTGGGGA-TCGACCCG-TTCCCCCTCTACGTCCTGTC
64 AACCGGCCGAAGAGGCAGAATGCACAAGCTGGGGACT-GACCCGATCCCCCCTCTA--TCCTGTC
* * * *
34684455 GGTCCCGCTACCACAACCCTCGGTCCGGCTAGG
126 GATCCCACTACCACAACCCTCGATCCGGCTAGA
* * * *
34684488 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCTAACCCACGAAACGAGTGTGCGGGCACTTAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGAGCGTGCGGGCACTCAA
* * * * * *
34684553 TCGGCCGGAGAGGCAGAATGCGCAAG-TCAGGGATTGGCCCGATCCCCCCT
66 CCGGCCGAAGAGGCAGAATGCACAAGCT-GGGGACTGACCCGATCCCCCCT
34684603 ACGTGTTGCT
Statistics
Matches: 219, Mismatches: 45, Indels: 18
0.78 0.16 0.06
Matches are distributed among these distances:
157 11 0.05
158 86 0.39
159 112 0.51
160 10 0.05
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGAGCGTGCGGGCACTCAA
CCGGCCGAAGAGGCAGAATGCACAAGCTGGGGACTGACCCGATCCCCCCTCTATCCTGTCGATCC
CACTACCACAACCCTCGATCCGGCTAGA
Found at i:34684676 original size:26 final size:26
Alignment explanation
Indices: 34684647--34684699 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
34684637 CTGGTCCGAT
34684647 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* * *
34684673 CTTAGCCTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
34684699 C
1 C
34684700 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:34685698 original size:159 final size:158
Alignment explanation
Indices: 34685396--34685898 Score: 385
Period size: 159 Copynumber: 3.2 Consensus size: 158
34685386 AGTCCATATG
* * * *
34685396 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAC-GAGCGTGCGGGCGCTCA
1 CTTAGAC-TGGGAATGAACTTCGTATGCATAAGGCAACCCACGAAACGGA-CGTGCGGACGCTCA
*** * * * * * ** * * * ** *
34685459 ACCGACTGGAGAGGCAGAATGCACAAGCTGGGGATCGACCCGGTCCTCCCCTC-CATCCTATCAA
64 GTGGGCCGAAAAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCC-CCCC-CGCGTGCTGCCCA
* **
34685523 TCCTGCTACCGTAACCCTCGGTCTGATCTGAT
127 TCCTGCTGCCACAACCCTCGGTCTGATCTGAT
** * * * *
34685555 CTTAGACTGGGAATGAACTTCGTATGCATAAGTTAACCCATGAAAC-GAGCGTGTGGGCGCTGAG
1 CTTAGACTGGGAATGAACTTCGTATGCATAAGGCAACCCACGAAACGGA-CGTGCGGACGCTCAG
* * * * * ***
34685619 CT-GGCCGAAAAGGCATAATGCGCAAGCTAGGGATCGGCCCGATCCCCCTCTGTGTGCTGCGGGT
65 -TGGGCCGAAAAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCC-CCGCGTGCTGCCCAT
* * **
34685683 CCCT-CTGCCACAACCCTCGATCT-AGCTGGGG
128 -CCTGCTGCCACAACCCTCGGTCTGATCT-GAT
* * *
34685714 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGGCAACCCACGAAACGGACGTGCGGACGCTCAG
1 CTTAGAC-TGGGAATGAACTTCGTATGCATAAGGCAACCCACGAAACGGACGTGCGGACGCTCAG
* * *
34685778 TGGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCCCGCGTGCTGCCCATCC
65 TGGGCCGAAAAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCCCGCGTGCTGCCCATCC
* * * *
34685843 TGCTGTCGCAACCCTCGGTCTGGTCCGAT
130 TGCTGCCACAACCCTCGGTCTGATCTGAT
34685872 CTTAGACTGGGAATGAAC-TCTGTATGC
1 CTTAGACTGGGAATGAACTTC-GTATGC
34685899 TTAGAATGGG
Statistics
Matches: 267, Mismatches: 64, Indels: 27
0.75 0.18 0.08
Matches are distributed among these distances:
157 5 0.02
158 56 0.21
159 200 0.75
160 6 0.02
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTTCGTATGCATAAGGCAACCCACGAAACGGACGTGCGGACGCTCAGT
GGGCCGAAAAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCCCGCGTGCTGCCCATCCT
GCTGCCACAACCCTCGGTCTGATCTGAT
Found at i:34685901 original size:26 final size:26
Alignment explanation
Indices: 34685872--34685924 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
34685862 CTGGTCCGAT
* *
34685872 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
*
34685898 CTTAGAATGGGGATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
34685924 C
1 C
34685925 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Found at i:34686548 original size:341 final size:342
Alignment explanation
Indices: 34685898--34686625 Score: 845
Period size: 341 Copynumber: 2.1 Consensus size: 342
34685888 ACTCTGTATG
* * * *
34685898 CTTAGAATGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGACGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGACGCTCAGC
*** *
34685963 TGGTCGGAGAGGCCTACCGAAGAGGCATAATGCGCAAGTCAGGGATCAACCTGATCCCCCTATAC
66 CAATCGGAGAGGCCGACCGAAGAGGCATAATGCGCAAGTCAGGGATCAACCTGATCCCCCTATAC
* * *
34686028 GGGCTGCCAATCTCGCTACCGGTCCTGCTGCCACAACCCTCGGTCCGATTGGAGCTTAGAAATGC
131 GGGCTGCCAATCCCGCTACCGGTCCTGCTACCACAACCCTCGGTCCGACTGGAGCTTAGAAATGC
* * * * * * *
34686093 AATGAACTCCGTATGCCTAAGCCAACCTATGAAATTGGCGTGCGGGCGCTCAGCCGGCCGGAGAT
196 AATGAACTCCGTATGCCTAAGCCAACCCATGAAATCGGCGTACGGGAGCTCAGCCGACCAGAGAG
* * * ** * *
34686158 GCAGAATGCACAAGTCGGGGACTGGCCCGATCCCCTTTACGTTCTGTCGATCCTACTGTCGCAAC
261 GCAGAATACACAAGCCAGGGACTGGCCCGATCCCCCCTACGTGCTGTCGATCCTACTATCGCAAC
* *
34686223 CCTCAG-TCTGGTC-TGAT
326 CCT-AGATCCGATCAT-AT
* * * ** **
34686240 CTTGGATTGGGAATGAACTCCGTATGCCTAAGTCAACTCACGAAACGAGCGTGTGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGACGCTCAGC
* ** * * *
34686305 CAATTGGAGAGGCCGGTCGAAGAGGCATAATGCGCAAGTCA-GGATCAGCCCTG-TCCCCCTCTG
66 CAATCGGAGAGGCCGACCGAAGAGGCATAATGCGCAAGTCAGGGATCA-ACCTGATCCCCCTATA
* * * * ** * * * *
34686368 CGTGCTGTCGATCCCGTTGTCGGTCCTGCTACCACAACCCTCGGTCTGGCTGGGGCTTAGACATG
130 CGGGCTGCCAATCCCGCTACCGGTCCTGCTACCACAACCCTCGGTCCGACTGGAGCTTAGAAATG
* *
34686433 GAATGAACTCCGTATGCCTAAGCCAACCCATGAAA-CGAGCGTACGGGAGCTCAGCCTACCAGAG
195 CAATGAACTCCGTATGCCTAAGCCAACCCATGAAATCG-GCGTACGGGAGCTCAGCCGACCAGAG
* * * * *
34686497 AGGCAGAATACACAAGCCAGGGACTGGCCTGGTCCCCCCTGCGTGCTGTCGATCCTGCTATCGTA
259 AGGCAGAATACACAAGCCAGGGACTGGCCCGATCCCCCCTACGTGCTGTCGATCCTACTATCGCA
*
34686562 ACCCTTGATCCGATCATAT
324 ACCCTAGATCCGATCATAT
* *
34686581 CTTAGACTGGAAATGAACTCCGTATGCCTAAGTCAACCCATGAAA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
34686626 TGAGTGTGCG
Statistics
Matches: 320, Mismatches: 62, Indels: 9
0.82 0.16 0.02
Matches are distributed among these distances:
340 2 0.01
341 224 0.70
342 94 0.29
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (342 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGACGCTCAGC
CAATCGGAGAGGCCGACCGAAGAGGCATAATGCGCAAGTCAGGGATCAACCTGATCCCCCTATAC
GGGCTGCCAATCCCGCTACCGGTCCTGCTACCACAACCCTCGGTCCGACTGGAGCTTAGAAATGC
AATGAACTCCGTATGCCTAAGCCAACCCATGAAATCGGCGTACGGGAGCTCAGCCGACCAGAGAG
GCAGAATACACAAGCCAGGGACTGGCCCGATCCCCCCTACGTGCTGTCGATCCTACTATCGCAAC
CCTAGATCCGATCATAT
Found at i:34687670 original size:26 final size:26
Alignment explanation
Indices: 34687632--34687684 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34687622 GGCTCAAAAT
34687632 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
34687658 CTTAGACAT-GGAATGAACTTCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
34687684 C
1 C
34687685 CTAAATCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34688026 original size:159 final size:156
Alignment explanation
Indices: 34687657--34688086 Score: 429
Period size: 159 Copynumber: 2.7 Consensus size: 156
34687647 AACTCCGTAT
* * **
34687657 GCTTAGACATGGAATGAACTTCGTATGCCTAAATCAACCCACAAAATGAGCGTGCGGAG-GCTCC
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGC-GAGCGCT-C
* * * * *
34687721 A-CTGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCTGTGTGCTGTCGATC
64 AGCTGG-CGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGTGCTGTCCATC
** * * *
34687785 CTGCTGCCATAATCCTCGGTCTGGCCCAA
128 CCACTGCCACAACCCTAGGTCTGGCCCAA
* * *
34687814 TCTTAGAC-TAGGAATGAACTCCGTATGCATAAGTCAACCCATGAAATGAGCGTGCGAGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGAGCGCTCA
*
34687878 GCTGGCTGAAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCATGCT-TCCAG
65 GCTGGC-GAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTG--TGCTGTCCA-
* ****
34687942 TCCCACTGCCACAACCCTTAGTTC-GGCTGGG
126 TCCCACTGCCACAACCC-TAGGTCTGGCCCAA
* * * *
34687973 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGAGCGCTCAG
* * * * * * *
34688038 CCGACCAGAGAGGCAGAATGCGTAAGTCGAGGATTGGCCCGGTCCCCCT
66 CTGGCGA-AGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCT
34688087 ACATGCTGCT
Statistics
Matches: 225, Mismatches: 38, Indels: 18
0.80 0.14 0.06
Matches are distributed among these distances:
156 6 0.03
157 95 0.42
158 4 0.02
159 115 0.51
160 5 0.02
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.19
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGAGCGCTCAG
CTGGCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGTGCTGTCCATCCCA
CTGCCACAACCCTAGGTCTGGCCCAA
Found at i:34689452 original size:26 final size:26
Alignment explanation
Indices: 34689423--34689475 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
34689413 CCGGTCTGAT
34689423 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
34689449 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
34689475 C
1 C
34689476 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:34689790 original size:159 final size:157
Alignment explanation
Indices: 34689448--34689887 Score: 404
Period size: 159 Copynumber: 2.8 Consensus size: 157
34689438 AACTCCGTAT
* *
34689448 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCATGCGGGCACACAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCAGGCACACAG
* * * * * *
34689513 TCGATCGGAGAGGCAGAATGCATAAGCGAGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCTT
66 CCGACCAGAGAGGCAGAATGCACAAGCGAGGATCGACCCGATCCCCCCTGCGTGCTGCCGATCTC
* * *
34689578 GCTACCGCAACCTTCATTCCAGTCCTA
131 GCTACCACAACCCTCAGTCCAGTCCTA
* * * * **
34689605 TCTTAGAC-TGGAAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGCGCTGA
1 GCTTAGACATGG-AATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCAGGCACACA
* * ** * * *
34689669 GCCGACCAGAGGGGCATAATTTACAAGCCGAGGATCGGCTCGATGCCCCTCTGCGTGCTGCC-AG
65 GCCGACCAGAGAGGCAGAATGCACAAG-CGAGGATCGACCCGAT-CCCCCCTGCGTGCTGCCGA-
* * *
34689733 TCTCGCTACCACAACCCTCGGTCC-G-GCTGGG
127 TCTCGCTACCACAACCCTCAGTCCAGTCCT--A
* ** * * *
34689764 GCTTAGACATGGAATTAACTCCGTATGCCTAAGCCAACCCACAAAACAAGCGTGCGGGCTCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCAGGCACACAG
* * * * * *
34689829 CCGGCCGGAGAGGTAGAATACACAAGCCGGGGATCGGCCC-AGTCCCCCCACTGCGTGCT
66 CCGACCAGAGAGGCAGAATGCACAAG-CGAGGATCGACCCGA-T-CCCCC-CTGCGTGCT
34689888 ATCGATCCTG
Statistics
Matches: 227, Mismatches: 47, Indels: 15
0.79 0.16 0.05
Matches are distributed among these distances:
156 3 0.01
157 73 0.32
158 17 0.07
159 122 0.54
160 12 0.05
ACGTcount: A:0.25, C:0.31, G:0.26, T:0.18
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCAGGCACACAG
CCGACCAGAGAGGCAGAATGCACAAGCGAGGATCGACCCGATCCCCCCTGCGTGCTGCCGATCTC
GCTACCACAACCCTCAGTCCAGTCCTA
Found at i:34690182 original size:511 final size:509
Alignment explanation
Indices: 34689083--34690409 Score: 1529
Period size: 511 Copynumber: 2.6 Consensus size: 509
34689073 GCTCCGCATG
* * * ** * *
34689083 CTTAGACTGG-GATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGTGGGCGCTCAGC
1 CTTAGACTGGAAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCAGGCACTGAGC
* * * * * *
34689147 CGACCGAAAAGGCATAATGCGCAAGCCGGGGATCAGCCCGATCCCCCTCTGCGTGCTGCC-GATC
66 CGACCGAAGAGGCATAATGCACAAGCCGAGGATCGGCCCGATCCCTCTCTGCATGCTGCCAG-T-
* *
34689211 CTGCTACTGGTCCTAATTCCACAACCCTCGGTTCGGCTGGGGCTTAGACATGGAATGAACTCTGT
129 C--C--C--G--CT-A--CCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGT
* * * * * * *
34689276 ATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCTCCCAACCGCCCGAAGAAGCAGAATGCACA
183 ATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCTCTCAGCCGGCCGGAGAGGCAGAATGCACA
* * * * * * * **
34689341 AGTCGGGGATCAGCCCAATCCACCCTGCGTGTTACCGATCCTACTGCTAGTCCTGCTACTGTAAC
248 AGCCGGGGATCGGCCCAGTCCCCCCTGCGTGCTATCGATCCTGCTGCTAGTCCTGCTACCATAAC
* *
34689406 CCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCG
313 CCTCGATCCGATCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACA--GAATGAACTCCG
* * * * *
34689471 TATGCCTAAGCCAACCCATGAAACAAGCATGCGGGCACACAGTCGATCGGAGAGGCAGAATGCAT
376 TATGCCTAAGCCAACCCACGAAACAAG-ATGCAGGCACACAGTCGACCGAAGAGGCAGAATGCAC
* * * *
34689536 AAGCGAGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCTTGCTACCGCAACCTTCATTCCAGT
440 AAGCGAGGATCGACCCAATCCCCCCTGCGTGCTGTCGATCCTGCTACCACAACCCTCATTCCAGT
34689601 CCTAT
505 CCTAT
* * *
34689606 CTTAGACTGGAAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGCGCTGAGC
1 CTTAGACTGGAAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCAGGCACTGAGC
* ** * *
34689671 CGACC-AGAGGGGCATAATTTACAAGCCGAGGATCGGCTCGATGCCC-CTCTGCGTGCTGCCAGT
66 CGACCGA-AGAGGCATAATGCACAAGCCGAGGATCGGCCCGAT-CCCTCTCTGCATGCTGCCAGT
* *
34689734 CTCGCTACCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATTAACTCCGTATGCCTAAGCC
129 CCCGCTACCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCC
* * * *
34689799 AACCCACAAAACAAGCGTGCGGGCTCTCAGCCGGCCGGAGAGGTAGAATACACAAGCCGGGGATC
194 AACCCACGAAACGAGCGTGCGGGCTCTCAGCCGGCCGGAGAGGCAGAATGCACAAGCCGGGGATC
* * *
34689864 GGCCCAGTCCCCCCACTGCGTGCTATCGATCCTGCTGCTGGT-CTGCTGCCATAACCCTCGATCT
259 GGCCCAGT-CCCCC-CTGCGTGCTATCGATCCTGCTGCTAGTCCTGCTACCATAACCCTCGATCC
34689928 GATCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACA-AATGAACTCCGTATGCCTAAGC
322 GATCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACAGAATGAACTCCGTATGCCTAAGC
* * * * * *
34689992 CAACCCACGAAACGAATG-TGCAGGCGCTCTGTCGGCCGAAGAGGCAGAATGCGCAAGTCGGGGA
387 CAACCCACGAAAC-AA-GATGCAGGCACACAGTCGACCGAAGAGGCAGAATGCACAAG-CGAGGA
* * * *
34690056 TCGGCCTAATCCCCCCTGCGTGCTGTCGATCCTGCTACCACAACCCTCGATT-CGGT-TTGAT
449 TCGACCCAATCCCCCCTGCGTGCTGTCGATCCTGCTACCACAACCCTC-ATTCCAGTCCT-AT
* * * * *
34690117 CTTAGATTGGGAATGAACTTCGTATGCATAAGTCAACCCACGAAACGAGTGTGCGGGCACTGAGC
1 CTTAGACTGGAAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCAGGCACTGAGC
* * *
34690182 CGACCGAAGAGGCATAATGCGCAAGCTGGGGATCGGCCCGATCCCTCTCTGCATGCTGCCAGTCC
66 CGACCGAAGAGGCATAATGCACAAGCCGAGGATCGGCCCGATCCCTCTCTGCATGCTGCCAGTCC
* * * * *
34690247 CGCTGCCATAACCCTCAGTCCGGCTGGGGCCTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
131 CGCTACCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * * * *
34690312 CCCATGAAACGGGCGTGCGGGCACTCAGTCGGCTGGAAAGGCAGAATGCGCAAGCCGAGGATCGA
196 CCCACGAAACGAGCGTGCGGGCTCTCAGCCGGCCGGAGAGGCAGAATGCACAAGCCGGGGATCGG
* *
34690377 CCCAGTCCCCCCTGCGTGCCATCGATTCTGCTG
261 CCCAGTCCCCCCTGCGTGCTATCGATCCTGCTG
34690410 TCGTAACCCT
Statistics
Matches: 693, Mismatches: 98, Indels: 40
0.83 0.12 0.05
Matches are distributed among these distances:
509 20 0.03
510 73 0.11
511 278 0.40
512 119 0.17
513 62 0.09
514 24 0.03
515 2 0.00
517 1 0.00
519 1 0.00
523 12 0.02
524 97 0.14
525 4 0.01
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (509 bp):
CTTAGACTGGAAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCAGGCACTGAGC
CGACCGAAGAGGCATAATGCACAAGCCGAGGATCGGCCCGATCCCTCTCTGCATGCTGCCAGTCC
CGCTACCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
CCCACGAAACGAGCGTGCGGGCTCTCAGCCGGCCGGAGAGGCAGAATGCACAAGCCGGGGATCGG
CCCAGTCCCCCCTGCGTGCTATCGATCCTGCTGCTAGTCCTGCTACCATAACCCTCGATCCGATC
TGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACAGAATGAACTCCGTATGCCTAAGCCAAC
CCACGAAACAAGATGCAGGCACACAGTCGACCGAAGAGGCAGAATGCACAAGCGAGGATCGACCC
AATCCCCCCTGCGTGCTGTCGATCCTGCTACCACAACCCTCATTCCAGTCCTAT
Found at i:34690354 original size:159 final size:158
Alignment explanation
Indices: 34689970--34690391 Score: 440
Period size: 159 Copynumber: 2.7 Consensus size: 158
34689960 TGCTTAGACA
* * * *
34689970 AATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAATGTGCAGGCGCTCTGTCGGCCGAAGAG
1 AATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCACTCAGTCGGCCGAAGAG
* * * *
34690035 GCAGAATGCGCAAG-TCGGGGATCGGCCTAATCCCCCCTGCGTGCTGTCGATCCTGCTACCACAA
66 GCAGAATGCGCAAGCT-GGGGATCGGCCCAATCCCCCCTGCATGCTGCCGATCCCGCTACCACAA
* * * * * *
34690099 CCCTCGATTCGGTTTGATCTTAGATTGGG
130 CCCTCGATCCGGCTGGAGCCTAGAATGGG
* * * * * *
34690128 AATGAACTTCGTATGCATAAGTCAACCCACGAAACGAGTGTGCGGGCACTGAGCCGACCGAAGAG
1 AATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCACTCAGTCGGCCGAAGAG
* * * * *
34690193 GCATAATGCGCAAGCTGGGGATCGGCCCGATCCCTCTCTGCATGCTGCC-AGTCCCGCTGCCATA
66 GCAGAATGCGCAAGCTGGGGATCGGCCCAATCCC-CCCTGCATGCTGCCGA-TCCCGCTACCACA
*
34690257 ACCCTC-AGTCCGGCTGGGGCCTAGACAT-GG
129 ACCCTCGA-TCCGGCTGGAGCCTAGA-ATGGG
* * * * *
34690287 AATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCACTCAGTCGGCTGGAA-A
1 AATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCACTCAGTCGGC-CGAAGA
* * * *
34690351 GGCAGAATGCGCAAGCCGAGGATCGACCCAGTCCCCCCTGC
65 GGCAGAATGCGCAAGCTGGGGATCGGCCCAATCCCCCCTGC
34690392 GTGCCATCGA
Statistics
Matches: 214, Mismatches: 44, Indels: 12
0.79 0.16 0.04
Matches are distributed among these distances:
158 91 0.43
159 119 0.56
160 4 0.02
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.18
Consensus pattern (158 bp):
AATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCACTCAGTCGGCCGAAGAG
GCAGAATGCGCAAGCTGGGGATCGGCCCAATCCCCCCTGCATGCTGCCGATCCCGCTACCACAAC
CCTCGATCCGGCTGGAGCCTAGAATGGG
Found at i:34690470 original size:26 final size:26
Alignment explanation
Indices: 34690434--34690486 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
34690424 CTGATCCAAT
*
34690434 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
34690460 CTTATACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
34690486 C
1 C
34690487 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34690837 original size:26 final size:26
Alignment explanation
Indices: 34690808--34690857 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
34690798 CCGGTCCGAT
34690808 CTTAGAC-TGGGAATGAACTCCGTAGG
1 CTTAGACAT-GGAATGAACTCCGTAGG
34690834 CTTAGACATGGAATGAACTCCGTA
1 CTTAGACATGGAATGAACTCCGTA
34690858 TGCCTAAGCC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.24
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTAGG
Found at i:34691199 original size:26 final size:26
Alignment explanation
Indices: 34691161--34691210 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
34691151 CTGGTTCGAT
34691161 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
34691187 CTTAGAC-ATGGAATGAACTCCGTA
1 CTTAGACTA-GGAATGAACTCCGTA
34691211 CGCCTAAGCC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:34691204 original size:353 final size:348
Alignment explanation
Indices: 34690126--34691467 Score: 1090
Period size: 353 Copynumber: 3.8 Consensus size: 348
34690116 TCTTAGATTG
* * * * * *
34690126 GGAATGAACTTCGTATGCATAAGTCAACCCACGAAACGAGTGTGCGGGCACT-GAGCCGACCGAA
1 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCGAGCCGACCGAA
* * *
34690190 GAGGCATAATGCGCAAGCTGGGGATCGGCCCGAT---CC-CTC-TCTGC-AT---GCTGCCAGTC
66 GAGGCATAATGCGCAAGCCGAGGATCAGCCCGATCCCCCTCTCGTCTGCGATCCCGCTGCC-GTC
* * * * *
34690246 CCGCTGCCATAACCCTCAGTCCGGCTGGGGCCTAGACATGGAATGAACTCCCTATGCCTAAGCCA
130 CTGCTGCCATAACCCTC-GACCTGCT-GGGCTTAGACATGGAATGAAC-CCATATGCCTAAGCCA
* * * * ** * *
34690311 ACCCATGAAACGGGCGTGCGGGCACTCAGTCGGCTGGAAAGGCAGAATGCGCAAGCCGAGGATCG
192 ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAAAGGTAGAATGCGCAAGCCGGGGATCG
* * * * * * * * * *
34690376 ACCC-AGTCCCCCCTGCGTGCCATCGATTCTGCTGTCGTAACCCTTGGTCTGATCCAATCTTAGA
257 GCCCGA-TCCCCCCTGCATG-CTTCGGTCCTACTATCGCAACCCTTGGTCTGGTCCGATCTTAGA
* *
34690440 CTGGGAATGAACTTCGTATGCTTATAC-T
320 CTGGGAATGAACTCCGTATGCTTAGACAT
* * * *
34690468 GGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGCTCTCAGCCAGCCGGA
1 -GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTC-G--AGCC---
* * * *
34690533 GAGGTCGGTCGGAGAGGCATAATGCGCAAGCCGAGGATCAGCCCGGTCCCCCTCTGTGTGGTGCC
59 GA---C---CGAAGAGGCATAATGCGCAAGCCGAGGATCAGCCCGATCCCCCTCT-CGT-CTG-C
* ** ** *
34690598 GATCCCGCTGCCGGTCCTGCTGCCTTAATGCTCGGTCTGACTGGAGCTTAGACATGG-CT----C
115 GATCCCGCTGCC-GTCCTGCTGCCATAACCCTCGACCTG-CTGG-GCTTAGACATGGAATGAACC
* * * * * * *
34690658 CGTATGCCTAAGCCAACCCACGAAATGAGCATCCGGGAGCTCAACCGGCCAGAGAGGTAGAATGC
177 CATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAAAGGTAGAATGC
* * * * *
34690723 ACAAGCCGGGGATCGGCTCGGTCCCCCTTGCCTACTGCCGATCCTGTTGCTAGTCCTACTATCGC
242 GCAAGCCGGGGATCGGCCCGAT--CCC---CC--CTG-C-ATGC--TT-C-GGTCCTACTATCGC
* * *
34690788 AACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAGGCTTAGACAT
294 AACCCTTGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAT
* * * *
34690843 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCG-GTCGGCTGGA
1 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCGAGCCGACCGAA
* *
34690907 GAGGCATAATGCGCAAGCCGGGGATCAGCCCGATCCCCCTCTACGTACTGTCGATCCCGCTGTCG
66 GAGGCATAATGCGCAAGCCGAGGATCAGCCCGATCCCCCTCT-CGT-CTG-CGATCCCGCTGCCG
* *
34690972 CTCCTGCTGCCAGAACCCTCGACCTAGCTAGGGCTTAGCCATGGAATGAACCCATATGCCTAAGC
128 -TCCTGCTGCCATAACCCTCGACCT-GCT-GGGCTTAGACATGGAATGAACCCATATGCCTAAGC
**
34691037 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCTACCAGAAAGGTAGAATGCGCAAGCCGGGGAT
190 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAAAGGTAGAATGCGCAAGCCGGGGAT
* * * *
34691102 TGGCCCGATCCCCCCTGCATGCTTCGGTCCTACTACCGCAACCCTTAGTCTGGTTCGATCTTAGA
255 CGGCCCGATCCCCCCTGCATGCTTCGGTCCTACTATCGCAACCCTTGGTCTGGTCCGATCTTAGA
*
34691167 CTAGGAATGAACTCCGTATGCTTAGACAT
320 CTGGGAATGAACTCCGTATGCTTAGACAT
* *
34691196 GGAATGAACTCCGTACGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTC-AGCCGACCGAA
1 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCGAGCCGACCGAA
* * **
34691260 GAGGCAGAATGCGCAAGCCGAGGATC-GACCCGGT-CCCC-C-CG--TGCG-T---GCTATCGAT
66 GAGGCATAATGCGCAAGCCGAGGATCAG-CCCGATCCCCCTCTCGTCTGCGATCCCGCTGCCG-T
* * *** * * *
34691315 CCTGCTGCCGTAACCCTCAATCCAATTGGATCTTAGAC-TAGGAATGAACTCCGTATGCCTAAGT
129 CCTGCTGCCATAACCCTCGA-CCTGCTGG-GCTTAGACAT-GGAATGAAC-CCATATGCCTAAGC
* * * * * * *
34691379 CAACCCATGAAACGAGCGTGCGGGCGCTGAGCCAGCCAGAGAGGCATAATGCACAAGCCGGGGAT
190 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAAAGGTAGAATGCGCAAGCCGGGGAT
* *
34691444 CGACCC-AGTCCCCCGCTACATGCT
255 CGGCCCGA-TCCCCC-CTGCATGCT
34691468 GCCGGTCCCG
Statistics
Matches: 805, Mismatches: 136, Indels: 116
0.76 0.13 0.11
Matches are distributed among these distances:
340 3 0.00
341 41 0.05
342 81 0.10
343 53 0.07
344 1 0.00
345 3 0.00
346 2 0.00
347 4 0.00
349 2 0.00
350 2 0.00
351 1 0.00
352 5 0.01
353 148 0.18
354 1 0.00
355 2 0.00
356 33 0.04
357 3 0.00
358 1 0.00
359 5 0.01
360 3 0.00
361 92 0.11
362 73 0.09
363 2 0.00
364 8 0.01
365 2 0.00
366 75 0.09
367 9 0.01
368 35 0.04
369 3 0.00
370 4 0.00
371 1 0.00
372 1 0.00
373 2 0.00
374 103 0.13
375 1 0.00
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (348 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCGAGCCGACCGAA
GAGGCATAATGCGCAAGCCGAGGATCAGCCCGATCCCCCTCTCGTCTGCGATCCCGCTGCCGTCC
TGCTGCCATAACCCTCGACCTGCTGGGCTTAGACATGGAATGAACCCATATGCCTAAGCCAACCC
ACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAAAGGTAGAATGCGCAAGCCGGGGATCGGCCC
GATCCCCCCTGCATGCTTCGGTCCTACTATCGCAACCCTTGGTCTGGTCCGATCTTAGACTGGGA
ATGAACTCCGTATGCTTAGACAT
Found at i:34691583 original size:159 final size:158
Alignment explanation
Indices: 34691186--34691603 Score: 469
Period size: 159 Copynumber: 2.6 Consensus size: 158
34691176 AACTCCGTAT
*
34691186 GCTTAGACATGGAATGAACTCCGTACGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACA-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAG
* * * * * * *
34691251 CCGACCGAAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCCCCCGTGCGTGCTATCGATC
65 CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCAGTCCCCCCGTACATGCTACCGATC
* ** *
34691316 CTGCTGCCGTAACCCTCAATCCAATTGGA
130 CCGCTGCCACAACCCTCAATCCAACTGGA
* * * *
34691345 TCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTGAG
1 GCTTAGAC-AGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAG
* * * * * *
34691410 CCAGCCAGAGAGGCATAATGCACAAGCCGGGGATCGACCCAGT-CCCCCGCTACATGCTGCCGGT
65 CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCAGTCCCCCCG-TACATGCTACCGAT
** *** *
34691474 CCCGCTGCCACAACCCTCGGTCTGGCTGGG
129 CCCGCTGCCACAACCCTCAATCCAACTGGA
* * * *
34691504 GCTTAGACACGGAATGAACTCCCTATGCCTAAGCCAAGCCATGAAACGGGCGTGCGGGTGCTCAA
1 GCTTAGACA-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAG
* * * *
34691569 TCGGCCGGATAGGCAGAATGCGTAAGCTGGGGATC
65 CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATC
34691604 AGCCCGATCC
Statistics
Matches: 212, Mismatches: 44, Indels: 6
0.81 0.17 0.02
Matches are distributed among these distances:
158 7 0.03
159 204 0.96
160 1 0.00
ACGTcount: A:0.24, C:0.31, G:0.29, T:0.17
Consensus pattern (158 bp):
GCTTAGACAGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAGC
CGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCAGTCCCCCCGTACATGCTACCGATCC
CGCTGCCACAACCCTCAATCCAACTGGA
Found at i:34691705 original size:26 final size:26
Alignment explanation
Indices: 34691676--34691726 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
34691666 CCGGTCCGAT
*
34691676 CTTAGAC-TGGGAATGACCTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
34691702 CTTAGACATGGAATGAACTCCGTAT
1 CTTAGACATGGAATGAACTCCGTAT
34691727 ACCTAAGCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.27, C:0.22, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:34691831 original size:515 final size:499
Alignment explanation
Indices: 34690834--34692296 Score: 1393
Period size: 515 Copynumber: 2.9 Consensus size: 499
34690824 ACTCCGTAGG
*
34690834 CTTAGAC-ATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCG-
1 CTTAGACTA-GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCT-GA
* *
34690897 GTCGGCTGGAGAGGCATAATGCGCAAGCCGGGGATCAGCCCGATCCCCCTCTACGTACTGTCGAT
64 G-CCGCTGGAGAGGCATAATGCACAAGCCGGGGATCAGCCCG-TCCCCCTCTAC--A-TG-C--T
* * * * * *
34690962 CCCGCTGTCGCTCCTGCTGCCAGAACCCTCGACCTAGCTAGGGCTTAGCCATGGAATGAAC-CCA
121 GCCG--GT--C-CC-GCTGCCACAACCCTCGATCTGGCTGGGGCTTAGACATGGAATGAACTCCA
* * * *
34691026 TATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCTACCAGAAAGGTAGAATGCGC
180 TATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAACCGACCAGAAAGGCAGAATGCGC
** * *
34691091 AAGCCGGGGATTGGCCCGATCCCCCCTGCATGCTTCGGTCCTACTACCGCAACCCTTAGTCTGGT
245 AAGCCGGGGATCAGCCCGATCCCCCCTGCATCCTTCGGTCCTACTACCGCAACCCTTAGTCCGGT
* *
34691156 TCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTACGCCTAAGCC
310 CCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTACACCTAAGCC
** * ** *
34691221 AACCCATGAAACGAGCGTGCGGGTGCTCAGCCGACCGAAGAGGCAGAATGCGCAAGCCGAGGATC
375 AACCCACAAAACGAACGTGCGGGCACTCAGCCGACCGAAGAGGCAGAATGCGCAAGCCGAGGACC
* * * *
34691286 GACCCGGTCCCCCCGTGCGTGCTATCGATCCTGCTGCCGTAACCCTCAATCCAAT-TGGAT
440 GACCCGATCCCCCCGTGCATGCTATCGATCCTACTGCCGCAACCCTCAATCCAATCT-GAT
34691346 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTGAGC
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTGAGC
** *
34691411 CAGCCAGAGAGGCATAATGCACAAGCCGGGGATC-GACCCAGTCCCCCGCTACATGCTGCCGGTC
66 C-GCTGGAGAGGCATAATGCACAAGCCGGGGATCAG-CCC-GTCCCCCTCTACATGCTGCCGGTC
* * *
34691475 CCGCTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACACGGAATGAACTCCCTATGCCTAAGCCA
128 CCGCTGCCACAACCCTCGATCTGGCTGGGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCA
* * * * * * * * *
34691540 AGCCATGAAACGGGCGTGCGGGTGCTCAATCGGCCGGATAGGCAGAATGCGTAAGCTGGGGATCA
193 ACCCACGAAACGGGCGTGCGGGCGCTCAACCGACCAGAAAGGCAGAATGCGCAAGCCGGGGATCA
* *
34691605 GCCCGATCCCCTTTTGCGTGCTGTCGATCCTACTGCTGGTCCTGCTACCGCAACCCTTGGTCCGG
258 GCCCGATCCCC-----C---CTG-C-ATCCT--T-C-GGTCCTACTACCGCAACCCTTAGTCCGG
* * *
34691670 TCCGATCTTAGACTGGGAATGACCTCCGTATGCTTAGACATGGAATGAACTCCGTATACCTAAGC
309 TCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTACACCTAAGC
* * * * * *
34691735 CAACTCACAAAACGAACGTGCGGGCACTCAGTCGACTGGAGAGGCAGAATGCGTAAGCCGGGGAC
374 CAACCCACAAAACGAACGTGCGGGCACTCAGCCGACCGAAGAGGCAGAATGCGCAAGCCGAGGAC
* * * ** **
34691800 CGACCCGAT-CCCCCTTCGCATGCTGTCGATCCTACTGCCGCAACCTTCGGTCCGGTCTGAT
439 CGACCCGATCCCCCCGT-GCATGCTATCGATCCTACTGCCGCAACCCTCAATCCAATCTGAT
* * * * * * *
34691861 TTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACTAGCGTTCAGGAGCTGAGC
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTGAGC
* ** * * *
34691926 CGACTGGAAAGGCATAATGCGA-AAGCCGGGGATCAGTCTGGTCCCCCTCTGCGTGCTGCCGGTG
66 CG-CTGGAGAGGCATAATGC-ACAAGCCGGGGATCAG-CCCGTCCCCCTCTACATGCTGCCGGTC
* * ** *
34691990 CCGCTGCCACAACCCTCGATCCGGTTGGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCAA
128 CCGCTGCCACAACCCTCGATCTGGCTGGGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCA
* * * * * * **
34692055 ACCCACGAAATGGGCGTGCGGGCACTCAGCC-AGCTGAAGAGGCAAAATGCGCAAGTAGGGGATC
193 ACCCACGAAACGGGCGTGCGGGCGCTCAACCGACCAGAA-AGGCAGAATGCGCAAGCCGGGGATC
* * * * * * * * * ** *
34692119 AACTCGGTTCCCCCCTGCGTGCTGCTGATCC-AGCTGCCGCAA-CCTTCGGTTTGGTCTGATCTT
257 AGC-CCGATCCCCCCTGCATCCTTC-GGTCCTA-CTACCGCAACCCTT-AGTCCGGTCCGATCTT
* * * * ** *
34692182 AGACTGGGGAATAAACTCCATATGCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAACCCA
318 AGACT-AGGAATGAACTCCGTATGCTTAGACAT-GGAATGAACTCCGTACACCTAAGCCAACCCA
* * * * * * * *
34692246 CGAAAC-AACCTTGCGGGCGCTCAGCTGGCCGGAGAGGCAAAATGTGCAAGC
381 CAAAACGAA-CGTGCGGGCACTCAGCCGACCGAAGAGGCAGAATGCGCAAGC
34692297 TGGGGATCAA
Statistics
Matches: 789, Mismatches: 130, Indels: 72
0.80 0.13 0.07
Matches are distributed among these distances:
500 39 0.05
501 78 0.10
502 5 0.01
503 35 0.04
504 89 0.11
506 8 0.01
507 1 0.00
508 4 0.01
509 5 0.01
510 2 0.00
511 8 0.01
512 101 0.13
513 3 0.00
514 11 0.01
515 389 0.49
516 11 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.19
Consensus pattern (499 bp):
CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTGAGC
CGCTGGAGAGGCATAATGCACAAGCCGGGGATCAGCCCGTCCCCCTCTACATGCTGCCGGTCCCG
CTGCCACAACCCTCGATCTGGCTGGGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACC
CACGAAACGGGCGTGCGGGCGCTCAACCGACCAGAAAGGCAGAATGCGCAAGCCGGGGATCAGCC
CGATCCCCCCTGCATCCTTCGGTCCTACTACCGCAACCCTTAGTCCGGTCCGATCTTAGACTAGG
AATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTACACCTAAGCCAACCCACAAAACGAAC
GTGCGGGCACTCAGCCGACCGAAGAGGCAGAATGCGCAAGCCGAGGACCGACCCGATCCCCCCGT
GCATGCTATCGATCCTACTGCCGCAACCCTCAATCCAATCTGAT
Found at i:34691997 original size:159 final size:159
Alignment explanation
Indices: 34691702--34692206 Score: 408
Period size: 159 Copynumber: 3.2 Consensus size: 159
34691692 CCTCCGTATG
* * * * * * *
34691702 CTTAGACAT-GGAATGAACTCCGTATACCTAAGCCAACTCACAAAACGAACGTGCGGGCACTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCAAACCCACGAAATGAGCGTGCAGGCACTCAG
* * * * * * * * * * * *
34691766 TC-GACTGGAGAGGCAGAATGCGTAAGCCGGGGACCGAC-CCGATCCCCCTTCGCATGCTGTCGA
65 CCAG-CTGAAGAGGCAAAATGCGAAAGCAGGGGATCAACTCGGTTCCCCCCT-GCGTGCTGCCGA
34691829 TCCTA-CTGCCGCAACCTTCGGTCCGGTCTGAT
128 TCC-AGCTGCCGCAACCTTCGGTCCGGTCTGAT
* * *
34691861 TTTAGACTGGGAATGAACTCCGTATGCCTAAGTC-AACCCACGAAACT-AGCGTTCAGG-AGCTG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAG-CAAACCCACGAAA-TGAGCGTGCAGGCA-CTC
* * *
34691923 AGCC-GACTGGAA-AGGCATAATGCGAAAGCCGGGGATC-AGTCTGG-TCCCCCTCTGCGTGCTG
63 AGCCAG-CT-GAAGAGGCAAAATGCGAAAGCAGGGGATCAACTC-GGTTCCCCC-CTGCGTGCTG
* * * * **
34691984 CCGGTGCC-GCTGCCACAACCCTCGATCCGGT-TGGGG
124 CCGAT-CCAGCTGCCGCAACCTTCGGTCCGGTCT-GAT
* * *
34692020 CTTAGACAT-GGAATGAACTCTGTATGCCTAAGCAAACCCACGAAATGGGCGTGCGGGCACTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCAAACCCACGAAATGAGCGTGCAGGCACTCAG
* * *
34692084 CCAGCTGAAGAGGCAAAATGCGCAAGTAGGGGATCAACTCGGTTCCCCCCTGCGTGCTGCTGATC
65 CCAGCTGAAGAGGCAAAATGCGAAAGCAGGGGATCAACTCGGTTCCCCCCTGCGTGCTGCCGATC
**
34692149 CAGCTGCCGCAACCTTCGGTTTGGTCTGAT
130 CAGCTGCCGCAACCTTCGGTCCGGTCTGAT
* *
34692179 CTTAGACTGGGGAATAAACTCCATATGC
1 CTTAGACT-GGGAATGAACTCCGTATGC
34692207 TTAGACTGGG
Statistics
Matches: 275, Mismatches: 48, Indels: 45
0.75 0.13 0.12
Matches are distributed among these distances:
158 12 0.04
159 228 0.83
160 35 0.13
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (159 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCAAACCCACGAAATGAGCGTGCAGGCACTCAGC
CAGCTGAAGAGGCAAAATGCGAAAGCAGGGGATCAACTCGGTTCCCCCCTGCGTGCTGCCGATCC
AGCTGCCGCAACCTTCGGTCCGGTCTGAT
Found at i:34692231 original size:26 final size:27
Alignment explanation
Indices: 34692179--34692232 Score: 83
Period size: 26 Copynumber: 2.0 Consensus size: 27
34692169 TTGGTCTGAT
34692179 CTTAGACTGGGGAATAAACTCCATATG
1 CTTAGACTGGGGAATAAACTCCATATG
* *
34692206 CTTAGACTGGGG-ATGAACTCCGTATG
1 CTTAGACTGGGGAATAAACTCCATATG
34692232 C
1 C
34692233 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 13 0.52
27 12 0.48
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (27 bp):
CTTAGACTGGGGAATAAACTCCATATG
Found at i:34693433 original size:159 final size:158
Alignment explanation
Indices: 34693174--34694194 Score: 759
Period size: 159 Copynumber: 6.5 Consensus size: 158
34693164 TCGGACCAAA
* * * * *
34693174 GGTTGCGGCAGCAGGA-TCGGCAACACGCAG-GGGGGTC-GGGCCGATCCCCGGCTTGCGCATTC
1 GGTTGTGGCAGCAGGACT-GACAGCACGCAGAGGGGGACTGGGCCGATCCCCGGCTTGCGCATTA
* * * * * * *
34693236 TACCTCTCCGGCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTC
65 TGCCTCTCCGACCGGCTCAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTC
*
34693301 ATTCAATGTCTAAGCCCCAGCCAGACTGAG
130 ATTC-ATGTCTAAGCCCCAGCCAGACCGAG
* * * * * * *
34693331 GGTTGTGGTAGCAAGACTGACAGCATGTAGAGGGGGACTGGGCTGATCCCTGGCTTGCACATTAT
1 GGTTGTGGCAGCAGGACTGACAGCACGCAGAGGGGGACTGGGCCGATCCCCGGCTTGCGCATTAT
* * * *
34693396 GCCTCTCCGATCGGCTCAGTGCCCTCACGCTCATTTCGTGTGTTGACTTAGGCATACGGAGTTCA
66 GCCTCTCCGACCGGCTCAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCA
** *
34693461 TTCCCA-GTCTAAG-ATCGGACCAGACCGAG
131 TT--CATGTCTAAGCCCCAG-CCAGACCGAG
* * * * * * * *
34693490 GGTTGCGACATCAAGA-TCGATAGCACGC--AGGGGGA-TCGGGCCAATCCACGGCTTGCACATT
1 GGTTGTGGCAGCAGGACT-GACAGCACGCAGAGGGGGACT-GGGCCGATCCCCGGCTTGCGCATT
* * * * * *
34693551 CTGCCTCTCC-AGCCGGCTGAGCGCCCCCACTCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGT
64 ATGCCTCTCCGA-CCGGCTCAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGT
* *
34693615 TCATTCCTTGTCTAAGCCCCAGTCAGACCGAG
128 TCATT-CATGTCTAAGCCCCAGCCAGACCGAG
*** * * * * *
34693647 GGTTGTGGCAATGGGACCGATAGCACGCAGAGGGGGA-TCGCGCAGATCCCCAGCTTGCGCATTA
1 GGTTGTGGCAGCAGGACTGACAGCACGCAGAGGGGGACT-GGGCCGATCCCCGGCTTGCGCATTA
* * * * *
34693711 TGCCGCTCCGGCCTGCTCAGCGCCCGCACGTTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
65 TGCCTCTCCGACCGGCTCAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTC
* ** * * * *
34693776 ATTCCTAGTCTAAGATCAAACCGGACTGAG
130 ATTCAT-GTCTAAGCCCCAGCCAGACCGAG
** * * *
34693806 GGTTGCAGCAGCAGGA-TCGACAGCACGCA-AGGGGGGACCGGGCTGATCCCCGGCTTGTGCATT
1 GGTTGTGGCAGCAGGACT-GACAGCACGCAGA-GGGGGACTGGGCCGATCCCCGGCTTGCGCATT
* * * * * * * * * *
34693869 CTACCTCTTCGGCTGGCTGACCACCCGCACGCTTATTTCGTGGGTTTG-CTTAGGCATAGGGAGT
64 ATGCCTCTCCGACCGGCTCAGCGCCCGCACGCTCATTTCGTGGG-TTGACTTAGGCATACGGAGT
* * * *
34693933 TCATTTCATGTTTAAGCCCCAACCGGACCGAC
128 TCA-TTCATGTCTAAGCCCCAGCCAGACCGAG
* * * * *
34693965 GGTTGTGGCAGCCGGAC-CAGCAGCACGCAGAAGGGGACCGGGCCGATCCCCGGCTTGTGCATTA
1 GGTTGTGGCAGCAGGACTGA-CAGCACGCAGAGGGGGACTGGGCCGATCCCCGGCTTGCGCATTA
** * * * * * *
34694029 TGCCTCT-TTAGCCAGCTCAGTGCCTGCACACTCATTTTGTGGGTTGACTTATGCATACGGAGTT
65 TGCCTCTCCGA-CCGGCTCAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTT
** * *
34694093 CATTCCCA-GTCTAAG-ATCAGACCAAATCGAG
129 CATT--CATGTCTAAGCCCCAG-CCAGACCGAG
* * * * * *
34694124 GGTTGCGGCAGCAGGATTGACAGCATGCAG-GAGGGA-TCGGGCCGTTCCCCGGCTTGCGCATTC
1 GGTTGTGGCAGCAGGACTGACAGCACGCAGAGGGGGACT-GGGCCGATCCCCGGCTTGCGCATTA
*
34694187 CGCCTCTC
65 TGCCTCTC
34694195 TAGTCGGCTG
Statistics
Matches: 675, Mismatches: 157, Indels: 62
0.76 0.18 0.07
Matches are distributed among these distances:
156 4 0.01
157 142 0.21
158 55 0.08
159 461 0.68
160 12 0.02
161 1 0.00
ACGTcount: A:0.19, C:0.29, G:0.30, T:0.22
Consensus pattern (158 bp):
GGTTGTGGCAGCAGGACTGACAGCACGCAGAGGGGGACTGGGCCGATCCCCGGCTTGCGCATTAT
GCCTCTCCGACCGGCTCAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCA
TTCATGTCTAAGCCCCAGCCAGACCGAG
Found at i:34693712 original size:316 final size:315
Alignment explanation
Indices: 34693139--34694211 Score: 1218
Period size: 316 Copynumber: 3.4 Consensus size: 315
34693129 AAGCATAGAA
* * * * * * * * *
34693139 AGTTCATTCCTAGTCTAAGATCGGATCGGACCAAAGGTTGCGGCAGCAGGATCGGCAACACGCAG
1 AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGACAGCACGCAG
* * *
34693204 GGGGGTCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGGCCGACTGAGCACCCGCACGCTC
66 GGGGATCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCAGCCGGCTGAGCACCCGCACGCTC
* *
34693269 GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCAATGTCTAAGCCCCAGCCAGACTGAGGGT
131 GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGT
* * * * * * * *
34693334 TGTGGTAGCAAGACTGACAGCATGTAGAGGGGGACTGGGCTGATCCCTGGCTTGCACATTATGCC
196 TGTGGCAGCAGGACCGACAGCACGCAGAGGGGGAC-GGGCAGATCCCCGGCTTGCGCATTATGCC
* * *
34693399 TCTCCGATCGGCTCAGTGCCCTCACGCTCATTTCGTGTGTTGACTTAGGCATACGG
260 TCTCCGACCAGCTCAGTGCCCTCACGCTCATTTCGTGGGTTGACTTAGGCATACGG
* * * *
34693455 AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACATCAAGATCGATAGCACGCAG
1 AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGACAGCACGCAG
* * * * * * *
34693520 GGGGATCGGGCCAATCCACGGCTTGCACATTCTGCCTCTCCAGCCGGCTGAGCGCCCCCACTCTC
66 GGGGATCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCAGCCGGCTGAGCACCCGCACGCTC
* *
34693585 GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCTTGTCTAAGCCCCAGTCAGACCGAGGGT
131 GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGT
*** * * *
34693650 TGTGGCAATGGGACCGATAGCACGCAGAGGGGGATCGCGCAGATCCCCAGCTTGCGCATTATGCC
196 TGTGGCAGCAGGACCGACAGCACGCAGAGGGGGA-CGGGCAGATCCCCGGCTTGCGCATTATGCC
* * * * * * *
34693715 GCTCCGGCCTGCTCAGCGCCCGCACGTTCGTTTCGTGGGTTGACTTAGGCATACGG
260 TCTCCGACCAGCTCAGTGCCCTCACGCTCATTTCGTGGGTTGACTTAGGCATACGG
* * * *
34693771 AGTTCATTCCTAGTCTAAGATCAAACCGGACTGAGGGTTGC-AGCAGCAGGATCGACAGCACGCA
1 AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGA-CAGCAGGATCGACAGCACGC-
* * * * * * *
34693835 AGGGGGGACCGGGCTGATCCCCGGCTTGTGCATTCTACCTCTTCGGCTGGCTGACCACCCGCACG
64 A-GGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCAGCCGGCTGAGCACCCGCACG
** * * * * * * *
34693900 CTTATTTCGTGGGTTTGCTTAGGCATAGGGAGTTCATTTCATGTTTAAGCCCCAACCGGACCGAC
128 CTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAG
* * * *
34693965 GGTTGTGGCAGCCGGACC-AGCAGCACGCAGAAGGGGACCGGGCCGATCCCCGGCTTGTGCATTA
193 GGTTGTGGCAGCAGGACCGA-CAGCACGCAGAGGGGGA-CGGGCAGATCCCCGGCTTGCGCATTA
** * * *
34694029 TGCCTCT-TTAGCCAGCTCAGTG-CCTGCACACTCATTTTGTGGGTTGACTTATGCATACGG
256 TGCCTCTCCGA-CCAGCTCAGTGCCCT-CACGCTCATTTCGTGGGTTGACTTAGGCATACGG
* * * * *
34694089 AGTTCATTCCCAGTCTAAGATCAGACCAAATCGAGGGTTGCGGCAGCAGGATTGACAGCATGCAG
1 AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGACAGCACGCAG
* ** * *
34694154 GAGGGATCGGGCCGTTCCCCGGCTTGCGCATTCCGCCTCTCTAGTCGGCTGAGCACCC
66 G-GGGATCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCAGCCGGCTGAGCACCC
34694212 TAGTTCATTC
Statistics
Matches: 624, Mismatches: 124, Indels: 17
0.82 0.16 0.02
Matches are distributed among these distances:
315 1 0.00
316 321 0.51
317 50 0.08
318 252 0.40
ACGTcount: A:0.19, C:0.29, G:0.30, T:0.22
Consensus pattern (315 bp):
AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGACAGCACGCAG
GGGGATCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCAGCCGGCTGAGCACCCGCACGCTC
GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGT
TGTGGCAGCAGGACCGACAGCACGCAGAGGGGGACGGGCAGATCCCCGGCTTGCGCATTATGCCT
CTCCGACCAGCTCAGTGCCCTCACGCTCATTTCGTGGGTTGACTTAGGCATACGG
Found at i:34694979 original size:158 final size:157
Alignment explanation
Indices: 34694730--34695161 Score: 476
Period size: 158 Copynumber: 2.7 Consensus size: 157
34694720 CCCAGTCTAA
* * * * *
34694730 GCATACGAAGTTTATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAACACCAGACCAGACCGAGGGTTGTGGTAGCAGGATCGACA
* *
34694795 CCATACAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCAGCT-AAGCGC
66 GCATGCAGGGGGGACCGGGT-GATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCAGCTCAA-CGC
* * *
34694859 CCGCACGC-CTGTTTCGTGGGTTGGCTTAG
129 CCGCACACTC-ATTTCGTGGGTTGACTTAG
* * * * * *
34694888 GCATAGGGAGTTCATT-CCATGTCTAACCCCAG-CCGGATCGAGGGTTGTGGTAGCAGGACCGGC
1 GCATACGGAGTTCATTCCCA-GTCTAACACCAGACCAGACCGAGGGTTGTGGTAGCAGGATCGAC
* * * *
34694951 AGCATGCAGAGGGGGACCGGGCTGATCCCCGACGTGCGCATTATGCCTCTTCGGCCAGCTCAACG
65 AGCATGCAG-GGGGGACCGGG-TGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCAGCTCAACG
* *
34695016 CCCGTACACTCATTTCGTGGTTTGACTTAG
128 CCCGCACACTCATTTCGTGGGTTGACTTAG
* * * * * * *
34695046 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGATAGTAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAACACCAGACCAGACCGAGGGTTGTGGTAGCAGGATCGACA
* * * *
34695111 GCACGCAGGGGGGACCGGGTTGATCCTCGGCTTGTGCATTCTGCCTTTCCG
66 GCATGCAGGGGGGACCGGG-TGATCCCCGGCTTGCGCATTCTGCCTCTCCG
34695162 ATCGACTGAG
Statistics
Matches: 223, Mismatches: 44, Indels: 14
0.79 0.16 0.05
Matches are distributed among these distances:
157 36 0.16
158 150 0.67
159 37 0.17
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.22
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAACACCAGACCAGACCGAGGGTTGTGGTAGCAGGATCGACA
GCATGCAGGGGGGACCGGGTGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCAGCTCAACGCCC
GCACACTCATTTCGTGGGTTGACTTAG
Found at i:34696104 original size:26 final size:26
Alignment explanation
Indices: 34696054--34696106 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34696044 GTTGGCTTAG
*
34696054 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
34696080 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
34696106 G
1 G
34696107 ATTTTGTGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:34696806 original size:26 final size:26
Alignment explanation
Indices: 34696776--34696828 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
34696766 GTTGACTTAG
*
34696776 GCATACGAAGTTTA-TCCCTAGTCTAA
1 GCATACGAAGTTCATTCCC-AGTCTAA
* *
34696802 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
34696828 G
1 G
34696829 ATCGGACTGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:34697739 original size:26 final size:26
Alignment explanation
Indices: 34697709--34697761 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34697699 GTTGACTTAG
34697709 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
*
34697735 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
34697761 G
1 G
34697762 ATCGAACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:34698023 original size:159 final size:158
Alignment explanation
Indices: 34697799--34698245 Score: 501
Period size: 159 Copynumber: 2.8 Consensus size: 158
34697789 CAGGATCGGT
34697799 AGCACGCAG-GGGGAATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTC-TCTGATCGGCTGAGC
1 AGCACGCAGAGGGG-ATCGGG-CGATCCCCGGCTTGCGCATTCTGCCTCTTC-GATCGGCTGAGC
* * * * * **
34697862 GCCCACACACCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-
63 GCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCAACAGA
* * *
34697926 CCGAACCAAGGGTTGTGGTAGC-GAGACCGAC
128 CCGAACCAAGGGTTGCGGCAGCAG-GACAGAC
* * * * *
34697957 AGCACGTAGAAGGGGATCGGGTCGATCCTCGGTTTGCGCATTATGCCTCTTCGATCGGCTCAGCG
1 AGCACGCAG-AGGGGATCGGG-CGATCCCCGGCTTGCGCATTCTGCCTCTTCGATCGGCTGAGCG
* * * * **
34698022 CCCGGACGCTCGTTTCATGGGTTGACTTTGGCATACGGAGTTCATTCCCA-ATCTAAG-AATGGA
64 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCAACAGA
* * *
34698085 TCGAACCGAGGGTTGCGGCAGCAGGATAGAC
128 CCGAACCAAGGGTTGCGGCAGCAGGACAGAC
* * * *
34698116 AGCACGCAGAGGTGTACCGGGCTGATCCCCGGCTTGTGCATTCTGCCTCTTCGGTCGGCTGAGCG
1 AGCACGCAGAGG-GGATCGGGC-GATCCCCGGCTTGCGCATTCTGCCTCTTCGATCGGCTGAGCG
*
34698181 CCTGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCAGACAGA
64 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA-ACAGA
34698246 GTTCATTCCC
Statistics
Matches: 237, Mismatches: 41, Indels: 19
0.80 0.14 0.06
Matches are distributed among these distances:
158 16 0.07
159 207 0.87
160 11 0.05
161 3 0.01
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.23
Consensus pattern (158 bp):
AGCACGCAGAGGGGATCGGGCGATCCCCGGCTTGCGCATTCTGCCTCTTCGATCGGCTGAGCGCC
CGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCAACAGACCG
AACCAAGGGTTGCGGCAGCAGGACAGAC
Found at i:34698047 original size:933 final size:931
Alignment explanation
Indices: 34696193--34698061 Score: 2814
Period size: 933 Copynumber: 2.0 Consensus size: 931
34696183 GAAGCATCGT
* ** * *
34696193 CGGAGAGCCTAACCGGTGGGATTAGGGTTTTCGACGATTGGGGGGCAGGGGGTGTGCGCACATGA
1 CGGAGAGCCTAACCGATGACATTAGGGGTTCCGACGATTGGGGGGCAGGGGGTGTGCGCACATGA
* *
34696258 TGTGCGATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAAC
66 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTCAAGAAC
* * * *
34696323 TCACACCGCCTTAAAGAGCATTTAAGATTTTATAGGTTTGCTGCCAGTAGCCGTTAAATTGTCTG
131 TCACACCCCCTTAAAGAGCATTTAAGATTTTATAGGTTTACTGCCAGTAGCCATTAAAGTGTCTG
34696388 AAATGGGGACACTTTTTTCAAACGGTCACAAAATCTTCTCCACTTCGAGTTTTTAGCTGAATTTT
196 AAATGGGGACACTTTTTTCAAACGGTCACAAAATCTTCTCCACTTCGAGTTTTTAGCTGAATTTT
*
34696453 TTTATGCATGCCAAAAAAAATACAAGCATCACCTCTGCCAAATTTGGGGACAAAAATCTTTCTAA
261 TTTATGCATGCCAAAAAAAATACAAGCATCACCTCTACCAAATTTGGGGACAAAAATCTTTCTAA
34696518 AAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGGATC
326 AAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGGATC
34696583 GTCTTGCCACGAAACTTCACATGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAA
391 GTCTTGCCACGAAACTTCACATGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * *
34696648 TGGCATTGGCATGGCAGAAATATGAAGATGTGCTTGAACCCACCTACCACCCGTTTGATTCCTGG
456 TGGCATTGGCATGACAGAAATATGAAGATGTGCTTGAACCCACCTACCACCCGTTCGATTCCCGG
* * * *
34696713 CTTGCGCATTCTACCTCTCTGGTCGGTTGAGCGCCCGCACACTCGTTTAATAGGTTGACTTAGGC
521 CTTGCGCATTCTACCTCTCTGGTCAGCTGAGCACCCGCACACTCATTTAATAGGTTGACTTAGGC
* * **
34696778 ATACGAAGTTTATCCCTAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCA
586 ATACGAAGTTCATCCCTAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCA
** * *
34696843 AGGGTTGCGGTAGCAGGATTAGCACCACACAGGGGGGACCGGGCCGATCCCCGGCATGCGCATTC
651 AGGGTTGCGACAGCAGGATCAGCACCACACAGGGGGAACCGGGCCGATCCCCGGCATGCGCATTC
* ** * *
34696908 TGCCTCTCCGGCCCGCTGAGCGCCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTC
716 TGCCTCTCCGACCCGCTGAGCGCCCACACACCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTC
* * * * *
34696973 ATTCCATGTCTAAGCCCCAATCAGACCGAGGGTTGTGGCAGCGAGATCGGCAGCACGCAGAGGGG
781 ATTCCATGTCTAAGCCCCAACCAGACCAAGGGTTGTGGCAGCGAGACCGACAGCACGCAGAAGGG
*
34697038 GACCGAGCCGATCCCTGGCTTGCGCATTATGCCTCTTCGGCCAGCTCAGCGCCCGCACGCTCATT
846 GACCGAGCCGATCCCTGGCTTGCGCATTATGCCTCTTCGACCAGCTCAGCGCCCGCACGCTCATT
34697103 TCATGGGTTGACTTAT-GCATA
911 TCATGGGTTGACTT-TGGCATA
* *
34697124 CGGAGAGCCTAACCGATGACATTGGGGGTTCCGACGATTGGGGGGCCCGGGGGGGTGTGCGCACA
1 CGGAGAGCCTAACCGATGACATTAGGGGTTCCGACGATTGGGGGG--C-AGGGGGTGTGCGCACA
**
34697189 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTTGAG
63 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTCAAG
*
34697254 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTACTGCCAGTAGCCATTAAAGTGT
128 AACTCACACCCCCTTAAAGAGCATTTAAGATTTTATAGGTTTACTGCCAGTAGCCATTAAAGTGT
* * * *
34697319 CTGAAATGGGGACACTTTTTTCAAACGTTCACAAAATCTTCTCCATTTGGAGTTTTTAGTTGAAT
193 CTGAAATGGGGACACTTTTTTCAAACGGTCACAAAATCTTCTCCACTTCGAGTTTTTAGCTGAAT
* ** * * * *
34697384 TTTTTTGTGCATGGTAAAAAAAATACAGGGATCACCTCTACCACATTTGGGGACAAAACTCTTTC
258 TTTTTTATGCATGCCAAAAAAAATACAAGCATCACCTCTACCAAATTTGGGGACAAAAATCTTTC
* * *
34697449 T-AAAAAAATTTTAAAAGATCTCGAACCGTAAAAAGTTTCAAAAAT-AGTGAAAAATAGAAAACG
323 TAAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCA-TGAAAAATAGAAAACG
* **
34697512 GGTCGTCTTGCCACGAAACTTCACATGAAGGCTTAGGGGACCATTGTATGAATTTACAAGGGATA
387 GATCGTCTTGCCACGAAACTTCACATGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATA
* *
34697577 TAAATGGCATTGGCATGATAGAAATATGAAGATGTGCTTGAACCCACCTACCACCCGTTCGATTC
452 AAAATGGCATTGGCATGACAGAAATATGAAGATGTGCTTGAACCCACCTACCACCCGTTCGATTC
* * * *
34697642 CCGGCTTGCGCA-TCTTGCCTCTCTGGTCAGCTGAGCACCCGCACGCTCATTTCATGGGTTGACT
517 CCGGCTTGCGCATTC-TACCTCTCTGGTCAGCTGAGCACCCGCACACTCATTTAATAGGTTGACT
*
34697706 TAGGCATACGGAGTTCATCCCTAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGAACCA
581 TAGGCATACGAAGTTCATCCCTAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGAACCA
* * * * * * * *
34697771 GACCGAGGGTTTCGACAGCAGGATCGGTAGCACGCAGGGGGAATCGGGCCGATCCCCGGCTTGCG
646 GACCAAGGGTTGCGACAGCAGGATCAGCACCACACAGGGGGAACCGGGCCGATCCCCGGCATGCG
* * * *
34697836 CATTCTGCCTCTCTGATCGGCTGAGCGCCCACACACCCGTTTCGTGGGTTGGCTTAGGCATAGGG
711 CATTCTGCCTCTCCGACCCGCTGAGCGCCCACACACCCGTTTCATGGGTTGGCTTAGGCATAGGG
* * *
34697901 AGTTCATTCCATGTCTAAGCCCCAGCC-GAACCAAGGGTTGTGGTAGCGAGACCGACAGCACGTA
776 AGTTCATTCCATGTCTAAGCCCCAACCAG-ACCAAGGGTTGTGGCAGCGAGACCGACAGCACGCA
* * * * * * *
34697965 GAAGGGGATCGGGTCGAT-CCTCGGTTTGCGCATTATGCCTCTTCGATCGGCTCAGCGCCCGGAC
840 GAAGGGGACCGAGCCGATCCCT-GGCTTGCGCATTATGCCTCTTCGACCAGCTCAGCGCCCGCAC
*
34698029 GCTCGTTTCATGGGTTGACTTTGGCATA
904 GCTCATTTCATGGGTTGACTTTGGCATA
34698057 CGGAG
1 CGGAG
34698062 TTCATTCCCA
Statistics
Matches: 840, Mismatches: 90, Indels: 14
0.89 0.10 0.01
Matches are distributed among these distances:
931 39 0.05
932 8 0.01
933 538 0.64
934 255 0.30
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (931 bp):
CGGAGAGCCTAACCGATGACATTAGGGGTTCCGACGATTGGGGGGCAGGGGGTGTGCGCACATGA
TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTCAAGAAC
TCACACCCCCTTAAAGAGCATTTAAGATTTTATAGGTTTACTGCCAGTAGCCATTAAAGTGTCTG
AAATGGGGACACTTTTTTCAAACGGTCACAAAATCTTCTCCACTTCGAGTTTTTAGCTGAATTTT
TTTATGCATGCCAAAAAAAATACAAGCATCACCTCTACCAAATTTGGGGACAAAAATCTTTCTAA
AAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGGATC
GTCTTGCCACGAAACTTCACATGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAA
TGGCATTGGCATGACAGAAATATGAAGATGTGCTTGAACCCACCTACCACCCGTTCGATTCCCGG
CTTGCGCATTCTACCTCTCTGGTCAGCTGAGCACCCGCACACTCATTTAATAGGTTGACTTAGGC
ATACGAAGTTCATCCCTAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCA
AGGGTTGCGACAGCAGGATCAGCACCACACAGGGGGAACCGGGCCGATCCCCGGCATGCGCATTC
TGCCTCTCCGACCCGCTGAGCGCCCACACACCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTC
ATTCCATGTCTAAGCCCCAACCAGACCAAGGGTTGTGGCAGCGAGACCGACAGCACGCAGAAGGG
GACCGAGCCGATCCCTGGCTTGCGCATTATGCCTCTTCGACCAGCTCAGCGCCCGCACGCTCATT
TCATGGGTTGACTTTGGCATA
Found at i:34698401 original size:184 final size:182
Alignment explanation
Indices: 34698059--34698607 Score: 665
Period size: 185 Copynumber: 3.0 Consensus size: 182
34698049 TTGGCATACG
** *
34698059 GAGTTCATTCCCAATCTAAGAATGGATC-GAACCGAGGGTTGCGGCAGCAGGATAGACAGCACGC
1 GAGTTCATTCCCAATCTAAGAATGGATCAG-ACCGAGGGTTGCGATAGCAGGACA-ACAGCACGC
* * * * * *
34698123 AGAGGTGTACCGGGCTGATCCCCGGCTTGTGCATTCTGCCTCTTCGGTCGGCTGAGCGCCTGCAC
64 AG-GGGGGATCGGGC-GATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCAC
34698188 GCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCAGACA
127 GCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCAGACA
*
34698244 GAGTTCATTCCCATTCTAAG-ATCGGATCAGACCGAGGGTTGCGATAGCAGGACCAACAGCACGC
1 GAGTTCATTCCCAATCTAAGAAT-GGATCAGACCGAGGGTTGCGATAGCAGGA-CAACAGCACGC
* * * * *
34698308 AGGGGGGATCGGGTCGATCCCCGGCTTACGCATTCTGCCTCTCCGGCCGACTGAGCGCCCGTATG
64 AGGGGGGATCGGG-CGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACG
* * * *
34698373 CTCATTTCGTGAGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACA
128 CTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCAGACA
* * ** ** *
34698428 GAGTTCATTCCCAGTCTAAGAATGGACCAGACTAAGGGTTGC-AGTAAG-AGGATCAGTAGCATG
1 GAGTTCATTCCCAATCTAAGAATGGATCAGACCGAGGGTTGCGA-T-AGCAGGA-CAACAGCACG
* * * * *
34698491 CAGGGGGGGATCGGGCCGATCCCCAGCTTGCACATTTTGCCTCTCCGATGGGCTGAGCGCCCGCA
63 CA-GGGGGGATCGGG-CGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCA
* *
34698556 CGTTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGC
126 CGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
34698608 CCCAGCTGGA
Statistics
Matches: 313, Mismatches: 43, Indels: 16
0.84 0.12 0.04
Matches are distributed among these distances:
183 1 0.00
184 152 0.49
185 158 0.50
186 2 0.01
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (182 bp):
GAGTTCATTCCCAATCTAAGAATGGATCAGACCGAGGGTTGCGATAGCAGGACAACAGCACGCAG
GGGGGATCGGGCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTC
GTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCAGACA
Found at i:34698431 original size:26 final size:26
Alignment explanation
Indices: 34698395--34698447 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34698385 GTTGGCTTAG
*
34698395 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
34698421 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
34698447 G
1 G
34698448 AATGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:34698813 original size:26 final size:26
Alignment explanation
Indices: 34698777--34698829 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34698767 GTTGACTTAG
*
34698777 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATAGGGAGTTCATCCCCAGTCTAA
*
34698803 GCATAGGGAGTTCATTCCCAGTCTAA
1 GCATAGGGAGTTCATCCCCAGTCTAA
34698829 G
1 G
34698830 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATAGGGAGTTCATCCCCAGTCTAA
Found at i:34699124 original size:159 final size:158
Alignment explanation
Indices: 34698803--34699173 Score: 435
Period size: 159 Copynumber: 2.3 Consensus size: 158
34698793 CCCAGTCTAA
** * *
34698803 GCATAGGGAGTTCATTCCCA-GTCTAAG-ATCGGACCGGACCGAGGGTTGTGGCAGCAGGATCGA
1 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCGGACCGAGGGTTGTGGCTGCAGGATCGA
** * *
34698866 CAGAACGTAGGGGGGACCGAGCTGATCCCCAGCTTACGCATTCTACCTCTCCAGCTAGCTGAGTG
64 CAGAACACAGGGGGGACCGAGCCGATCCCCAGCTTACGCATTCTACCTCTCCAGCTAGCTGAGCG
* *
34698931 CCCGTACGCCTGTTTCATGGGTTGGCTTAG
129 CCCGCACGCCCGTTTCATGGGTTGGCTTAG
* **
34698961 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCTGCAGGATCGGTA
1 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCTGCAGGATCGACA
* * * * * * * *
34699026 GAACACAGAGGGGGACCGGGCCGAT-CCTAGGCTTGCGCATTTTTCCTTTTC-GGTCAGCTGAGC
66 GAACACAG-GGGGGACCGAGCCGATCCCCA-GCTTACGCATTCTACCTCTCCAGCT-AGCTGAGC
* *
34699089 GCCCGCATGCCCGTTTCGTGGGTTGGCTTAG
128 GCCCGCACGCCCGTTTCATGGGTTGGCTTAG
* * *
34699120 GCATAAGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACTGAGGGTTATGGCTG
1 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCTG
34699174 TGGGACCGAC
Statistics
Matches: 181, Mismatches: 27, Indels: 9
0.83 0.12 0.04
Matches are distributed among these distances:
157 3 0.02
158 62 0.34
159 116 0.64
ACGTcount: A:0.19, C:0.26, G:0.32, T:0.23
Consensus pattern (158 bp):
GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCTGCAGGATCGACA
GAACACAGGGGGGACCGAGCCGATCCCCAGCTTACGCATTCTACCTCTCCAGCTAGCTGAGCGCC
CGCACGCCCGTTTCATGGGTTGGCTTAG
Found at i:34699331 original size:26 final size:26
Alignment explanation
Indices: 34699295--34699347 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
34699285 GTTAGCTTAG
34699295 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
34699321 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
34699347 G
1 G
34699348 ATTTTGAACC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:34700564 original size:26 final size:26
Alignment explanation
Indices: 34700515--34700567 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
34700505 GTTGGCTTAG
*
34700515 GCATACGGAGTTCATTGCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
34700541 GCATATGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
34700567 G
1 G
34700568 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:34700933 original size:26 final size:26
Alignment explanation
Indices: 34700897--34700947 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
34700887 TGACTTAGGC
*
34700897 ATACGGAGTTCATCCCCAGTCTAAGT
1 ATACAGAGTTCATCCCCAGTCTAAGT
*
34700923 ATACAGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATCCCCAGTCTAAG
34700948 ATCAGACCAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
ATACAGAGTTCATCCCCAGTCTAAGT
Found at i:34701272 original size:158 final size:157
Alignment explanation
Indices: 34700923--34701283 Score: 358
Period size: 158 Copynumber: 2.3 Consensus size: 157
34700913 CAGTCTAAGT
* * ** * *
34700923 ATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGGGGGTTGTGGCATCAGGATCGACAGC
1 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAAGGTTGTGGCAGCAGGACCGACAGC
* * ** * * *
34700988 ACGTAGGGGGACAGGGTCGATCCTCGGCTTGCGTATTCTACCTCTCCGATCGGCTGAGTGACCGC
66 ACGTAGGGGGACAGGGCCAATCCTCGGCTTGCACATTATACCTCTCCGATCGGCTCAGAGACCGC
* *
34701053 ACGCCCATTTCGTGGGTTGGCTTATGC
131 ACGCCCATTTCGTGGGTTGACTTATGA
* ** *
34701080 ATAGGGAGTTCATT-CCATGTCTAAGCCCCA-ACCGGACTGAAGGTTGTGGCAGCAGGACCGACA
1 ATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCGAAGGTTGTGGCAGCAGGACCGACA
* * * *
34701143 GCACGTAGAGGGGGATC-GGGCCAATCC-CGGCTTGCACATTATGCCTCTTCG-GCTGGTTCAGA
64 GCACGT--AGGGGGA-CAGGGCCAATCCTCGGCTTGCACATTATACCTCTCCGATC-GGCTCAGA
* * * *
34701205 GCCCGCATGCTCGTTTCGTGGGTTGACTTAT-A
125 GACCGCACGCCCATTTCGTGGGTTGACTTATGA
34701237 AGTACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACC-AAGAGTTG
1 A-TACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAAG-GTTG
34701284 AGGTAGCAAG
Statistics
Matches: 163, Mismatches: 31, Indels: 19
0.77 0.15 0.09
Matches are distributed among these distances:
156 3 0.02
157 59 0.36
158 82 0.50
159 18 0.11
160 1 0.01
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.23
Consensus pattern (157 bp):
ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAAGGTTGTGGCAGCAGGACCGACAGC
ACGTAGGGGGACAGGGCCAATCCTCGGCTTGCACATTATACCTCTCCGATCGGCTCAGAGACCGC
ACGCCCATTTCGTGGGTTGACTTATGA
Found at i:34702498 original size:160 final size:155
Alignment explanation
Indices: 34702142--34702641 Score: 489
Period size: 160 Copynumber: 3.2 Consensus size: 155
34702132 CCCAGTCTAA
** ** *
34702142 GCATACGGAGTTCATTCCCAGTCTAAGATTGAACCGGATTGAGGGTTGCGACAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTG-GGCAGCAGGATCGACA
* * * * *
34702207 GCACACAGGGGGGACGGGCCATCCCCGACTTGCGCATTATGCCTCTCCAGTTGGCTGAGCGCCCG
65 GCACGCAGGGGGGACGGACGATCCCCGACTTGCGCATTATGCCTCTACGGTTGGCTGAGCGCCCG
* * *
34702272 TACGTCCGTTTCATGGGTTGGCTTAG
130 CACGTTCGTTTCGTGGGTTGGCTTAG
* * **** ** * ** * * **
34702298 GTATAGGGAGTTCATTCTTTCTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCGGGACCCGTT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTG-GGCAGCAGGA-TCGAC
* * * ** * *
34702363 AGCATGCAGAGGGGGACTGAGTCGATCCCCGACTTGCGCATTATGCCTCTTCGGCCGGCTCAGCA
64 AGCACGCAG-GGGGGAC-G-GACGATCCCCGACTTGCGCATTATGCCTCTACGGTTGGCTGAGCG
*
34702428 CCCGCACGTTCGTTTCGTGGGTTGACTTAG
126 CCCGCACGTTCGTTTCGTGGGTTGGCTTAG
* * * *
34702458 GCATACGAAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTGCGTAGCAGGATCAACAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTGGGCAGCAGGATCGACAG
* * * * * *
34702523 TACGCAGGGGGGACCGGACGGGTCCCCGGCTTGCGTATTTTGCCTCTACGGTTGGTTGAGCGCCC
66 CACGCAGGGGGGA-CGGAC-GATCCCCGACTTGCGCATTATGCCTCTACGGTTGGCTGAGCGCCC
*
34702588 GCACGCTCGTTTCGTGGGTTGGCTTAG
129 GCACGTTCGTTTCGTGGGTTGGCTTAG
34702615 GCATACGGAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
34702642 CATACGGAGT
Statistics
Matches: 268, Mismatches: 69, Indels: 13
0.77 0.20 0.04
Matches are distributed among these distances:
156 47 0.18
157 98 0.37
158 16 0.06
159 8 0.03
160 99 0.37
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.24
Consensus pattern (155 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTGGGCAGCAGGATCGACAG
CACGCAGGGGGGACGGACGATCCCCGACTTGCGCATTATGCCTCTACGGTTGGCTGAGCGCCCGC
ACGTTCGTTTCGTGGGTTGGCTTAG
Found at i:34702590 original size:157 final size:156
Alignment explanation
Indices: 34702142--34702641 Score: 500
Period size: 157 Copynumber: 3.2 Consensus size: 156
34702132 CCCAGTCTAA
** **
34702142 GCATACGGAGTTCATTCCCAGTCTAAGATTGAACCGGATTGAGGGTTGCGACAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTGCG-CAGCAGGATCGACA
* * * * *
34702207 GCACACAGGGGGGA-CGGGCCATCCCCGACTTGCGCATTATGCCTCTCCAGTTGGCTGAGCGCCC
65 GCACGCAGGGGGGACCGGACGATCCCCGACTTGCGCATTATGCCTCTACGGTTGGCTGAGCGCCC
* * *
34702271 GTACGTCCGTTTCATGGGTTGGCTTAG
130 GCACGTTCGTTTCGTGGGTTGGCTTAG
* * **** ** * ** * * * **
34702298 GTATAGGGAGTTCATTCTTTCTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCGGGACCCGTT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTG-CGCAGCAGGA-TCGAC
* * * * ** * *
34702363 AGCATGCAGAGGGGGACTGAGTCGATCCCCGACTTGCGCATTATGCCTCTTCGGCCGGCTCAGCA
64 AGCACGCAG-GGGGGACCG-GACGATCCCCGACTTGCGCATTATGCCTCTACGGTTGGCTGAGCG
*
34702428 CCCGCACGTTCGTTTCGTGGGTTGACTTAG
127 CCCGCACGTTCGTTTCGTGGGTTGGCTTAG
* * *
34702458 GCATACGAAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTGCGTAGCAGGATCAACAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTGCGCAGCAGGATCGACAG
* * * * * *
34702523 TACGCAGGGGGGACCGGACGGGTCCCCGGCTTGCGTATTTTGCCTCTACGGTTGGTTGAGCGCCC
66 CACGCAGGGGGGACCGGAC-GATCCCCGACTTGCGCATTATGCCTCTACGGTTGGCTGAGCGCCC
*
34702588 GCACGCTCGTTTCGTGGGTTGGCTTAG
130 GCACGTTCGTTTCGTGGGTTGGCTTAG
34702615 GCATACGGAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
34702642 CATACGGAGT
Statistics
Matches: 267, Mismatches: 70, Indels: 13
0.76 0.20 0.04
Matches are distributed among these distances:
156 46 0.17
157 100 0.37
158 14 0.05
159 8 0.03
160 99 0.37
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.24
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTGCGCAGCAGGATCGACAG
CACGCAGGGGGGACCGGACGATCCCCGACTTGCGCATTATGCCTCTACGGTTGGCTGAGCGCCCG
CACGTTCGTTTCGTGGGTTGGCTTAG
Found at i:34702651 original size:26 final size:26
Alignment explanation
Indices: 34702615--34702667 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
34702605 GTTGGCTTAG
34702615 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
34702641 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
34702667 G
1 G
34702668 ATCGAACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:34702837 original size:26 final size:26
Alignment explanation
Indices: 34702807--34702862 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
34702797 TAGGTTGGCT
*
34702807 TAAGCATACGGAGTTCATT-CCATGTC
1 TAAGCATACAGAGTTCATTCCCA-GTC
34702833 TAAGCATACAGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTCATTCCCAGTC
34702859 TAAG
1 TAAG
34702863 ATCAGATCGG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 25 0.89
27 3 0.11
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.29
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATTCCCAGTC
Found at i:34703000 original size:195 final size:195
Alignment explanation
Indices: 34702579--34703031 Score: 599
Period size: 195 Copynumber: 2.3 Consensus size: 195
34702569 TACGGTTGGT
*
34702579 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
1 TGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
*
34702644 TACGGAGTTCATTCCCAGTCTAAGATCGAACCGGATCGAGGGTTGCAGTAGCAGGACCAACTGTA
66 TACAGAGTTCATTCCCAGTCTAAGATCGAACCGGATCGAGGGTTGCAGTAGCAGGACCAACTGTA
** * * * * * * *
34702709 GGATCGGTAGCACGTAGGGGGTGACTGGGCCGATCCCCGGCTTGCACATTCTGCCTCCCGGTCGC
131 GGATCGACAGCACGCAAGGGGTGACCGAGCCAATCCCCGGCTTACACATTCTGCCTCCCAGTCGC
* * * * * * *
34702774 TGAGCGCCTGAACGCTCATTTCATAGGTTGGCTTAAGCATACGGAGTTCATTCCATGTCTAAGCA
1 TGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
* ** *
34702839 TACAGAGTTCATTCCCAGTCTAAGATC-AGATCGGATCGAGGGTTGTGGTAGCAGGACC-AGTAG
66 TACAGAGTTCATTCCCAGTCTAAGATCGA-ACCGGATCGAGGGTTGCAGTAGCAGGACCAACT-G
* * *
34702902 TAGGATCGACAGCATGCAAGGGG-GACCGAGCTAATCCCCGGCTTACGCATTCTGCCTCTCCAGT
129 TAGGATCGACAGCACGCAAGGGGTGACCGAGCCAATCCCCGGCTTACACATTCTGCCTC-CCAGT
34702966 CGAC
193 CG-C
**
34702970 TG-GCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTTTATGTCTAAG
1 TGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
34703032 ACCCAGCTGG
Statistics
Matches: 222, Mismatches: 32, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
194 32 0.14
195 187 0.84
196 3 0.01
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.25
Consensus pattern (195 bp):
TGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
TACAGAGTTCATTCCCAGTCTAAGATCGAACCGGATCGAGGGTTGCAGTAGCAGGACCAACTGTA
GGATCGACAGCACGCAAGGGGTGACCGAGCCAATCCCCGGCTTACACATTCTGCCTCCCAGTCGC
Found at i:34703560 original size:158 final size:158
Alignment explanation
Indices: 34703301--34703701 Score: 371
Period size: 158 Copynumber: 2.5 Consensus size: 158
34703291 CCCCGACTTG
* * * * * * * * * * *
34703301 CGCATTCTACCTCTCCGGCCGACTGAGCGTCCACAAGCCCGTTTCGTGGGTTGGCTTAGGCATAG
1 CGCATTATACCTCTCCGGCCGGCTCAGTGCCCGCACGCTCGTTTAGTGGGTTGACTTAGGCATAC
* * *** * * **
34703366 GGAGTTCATGT-CATGTATAAGCCCCAGTC-GGATCGAGGGTCATGGCAGTGGGACCGACAGCAT
66 AGAGTTCAT-TCCATGTCTAA-TATCAGACTGGATCGAGGGTCACGGCAGCAGGACCGACAGCAT
* *
34703429 GCAGAAGGGGACCGAG-CCATCTTCGGCTTG
129 GCAG-AGGGGACCGAGTCCATCCTCGGCTTA
* * * *
34703459 CGCATTATGCCTTTTCGGCCGGCTCAGTGCCCGCACGCTCGTTTCA-TGGGTTGACTTATGCATA
1 CGCATTATACCTCTCCGGCCGGCTCAGTGCCCGCACGCTCGTTT-AGTGGGTTGACTTAGGCATA
* * * **
34703523 CGGAGTTCATTCCCA-GTCTAATATCAGACTGGATCGAGGGTTACGGTAGCAGGATTGACAGCAT
65 CAGAGTTCATT-CCATGTCTAATATCAGACTGGATCGAGGGTCACGGCAGCAGGACCGACAGCAT
* * * *
34703587 GTAGGGGGGACCGGGTCGATCCTCGGCTTA
129 GCAGAGGGGACCGAGTCCATCCTCGGCTTA
* * * *
34703617 CGCATTATACCTCTCCGGCCGGTTGAGTGCCTGCACGTTCGTTTAGTGGGTTGACTTAGGCATAC
1 CGCATTATACCTCTCCGGCCGGCTCAGTGCCCGCACGCTCGTTTAGTGGGTTGACTTAGGCATAC
34703682 AGAGTTCATTCCATGTCTAA
66 AGAGTTCATTCCATGTCTAA
34703702 CTGCCAGTCG
Statistics
Matches: 194, Mismatches: 42, Indels: 14
0.78 0.17 0.06
Matches are distributed among these distances:
157 18 0.09
158 174 0.90
159 2 0.01
ACGTcount: A:0.19, C:0.26, G:0.29, T:0.26
Consensus pattern (158 bp):
CGCATTATACCTCTCCGGCCGGCTCAGTGCCCGCACGCTCGTTTAGTGGGTTGACTTAGGCATAC
AGAGTTCATTCCATGTCTAATATCAGACTGGATCGAGGGTCACGGCAGCAGGACCGACAGCATGC
AGAGGGGACCGAGTCCATCCTCGGCTTA
Found at i:34703835 original size:26 final size:26
Alignment explanation
Indices: 34703797--34703847 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
34703787 ACGCATTATG
34703797 CTTAGACTGGGAATGAACTCCGTATA
1 CTTAGACTGGGAATGAACTCCGTATA
*
34703823 CTTAGACAT-GGAATGAACTTCGTAT
1 CTTAGAC-TGGGAATGAACTCCGTAT
34703848 GCCTAAGCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATA
Found at i:34704681 original size:26 final size:26
Alignment explanation
Indices: 34704652--34704704 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34704642 CCGATCCAAT
34704652 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
34704678 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
34704704 C
1 C
34704705 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:34704769 original size:355 final size:352
Alignment explanation
Indices: 34704052--34705110 Score: 996
Period size: 355 Copynumber: 2.9 Consensus size: 352
34704042 AGCCGGCCGA
* * * * *
34704052 AGAGGCATAATGCGCAAGCCGAGGATCAGCCTGTACCCCCTCTGTGTGCTGCCAGTCTCGCTGCC
1 AGAGGCATAATGCGTAAGCCG-GGATCAGCCCGT-CCCCCTCTGTGTGCTGCCTGTCCCACTGCC
* ** * *
34704117 ACAACCTTCGGTTTGGTTGGGGCTTAGACATGGAATGAACCCCCTATGCCTAAGCCAACCCATGA
64 ACAACCCTCGGTCCGGTTGGGGCTTAGACATGGAATGAACTCTCTATGCCTAAGCCAACCCATGA
* * * * * *
34704182 AACGGGCA-TACGGGTCGCTCAGCCGGCCGGAGAGACAGAATGCATAAGCC-GGGATCGGCTCGG
129 AACAGG-AGTGC-GG-CGCTCAGCCGGTCGGAGAGGCAGAATGCGTAAGCCGGGGATCGCCT-GG
* * * * * *
34704245 TCCCCCCTGCGTGCTGTCGATCCTGCTATCGCAACCCTCAGTCAGGTCCAATCTTAGACTGGGAA
190 TCCCCCCTGCGTGCTATCGATCTTGCTGTCGTAACCCTCGGTCAGGTCCAATCTTAGACTAGGAA
* * * * * **
34704310 TGAACTCCATATGCTTAGATTGGGGATTAACTCCATTTGCCTAAGTCAACCCATGAAACGAGCGT
255 TGAACTCCATATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGT
* * ** * *
34704375 ATGGGCACTCAGTCGACCAGAGAGGTCGATTAG
320 ACGGCCACTCAACCGACCAAAGAGGTCGATCAG
** *
34704408 AGAGGCATAATGCGTAAGCCAGGGATCAGCCCGATCCCCCTCTGCATGCTGCCTGTCCCACTACC
1 AGAGGCATAATGCGTAAGCC-GGGATCAGCCCG-TCCCCCTCTGTGTGCTGCCTGTCCCACTGCC
* *
34704473 AGAACCCTCGGTCCGGTTGGGGCTTAGACATGGAATGAACTCTCTATGCCTAAGCCAACCCATAA
64 ACAACCCTCGGTCCGGTTGGGGCTTAGACATGGAATGAACTCTCTATGCCTAAGCCAACCCATGA
* * *
34704538 AACAGGAGTGCGGCGCTAAGCCGGTTGGGGAGGCAGAATGCGTAAGCCGGGGATCGACCTGGTCC
129 AACAGGAGTGCGGCGCTCAGCCGGTCGGAGAGGCAGAATGCGTAAGCCGGGGATCG-CCTGGTCC
* * *
34704603 CCCCTGCGTGCTATCGATCTTGCTGTCGTAACCTTCGGTCCGATCCAATCTTAGACTAGGAATGA
193 CCCCTGCGTGCTATCGATCTTGCTGTCGTAACCCTCGGTCAGGTCCAATCTTAGACTAGGAATGA
34704668 ACTCCATATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAAC-ATGCGTAC
258 ACTCCATATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACGA-GCGTAC
* * * *
34704732 GGCCGCTCAACCGGCCAAAGAGGCTGGA-CGG
322 GGCCACTCAACCGACCAAAGAGG-TCGATCAG
* * *
34704763 AGAGGCATAATGCGTAAGCTGGGGATCAGCCCGGTCACCCTCTGTGTGCTACCGATCCTGCTGTC
1 AGAGGCATAATGCGTAAGC-CGGGATCAGCCC-GTCCCCCTCTGTGTGCT---G--CCTG-T-CC
* * * * * * *
34704828 GATCTTGCTGTCACAACCCTTGGTCCGGCTAGGGCTTAGACATGGAATGAACTATGTATGGCTAA
57 CA-C-TGC---CACAACCCTCGGTCCGGTTGGGGCTTAGACATGGAATGAACTCTCTATGCCTAA
** * * * * *
34704893 GCCAACCCATGAAACGAGCCTGTG-GGCGCTCATCCAGTCGAAGAGGCAGAATGCGCAAGTCGGG
117 GCCAACCCATGAAAC-AG-GAGTGCGGCGCTCAGCCGGTCGGAGAGGCAGAATGCGTAAGCCGGG
* *
34704957 GATCGGCCTGGTTCCCCCCTACGTGCTACCGATCCTACTGCTGGTCTTGCTGTTGCAACCCTCGG
180 GATC-GCCTGG-TCCCCCCTGCGTGCTATCGAT-CT--TGCT-G---T-C-G-T--AACCCTCGG
* * * * * *
34705022 TCTGGTCCGATCTTAGACTTGGAATGAACTTCGTATGCTTAGAC-ATGGAATGAACTCCGTATGC
231 TCAGGTCCAATCTTAGACTAGGAATGAACTCCATATGCTTAGACTA-GGGATGAACTCCGTATGC
* **
34705086 CTAAGACAACCCATGAAACGAGCGT
295 CTAAGTCAACCCACAAAACGAGCGT
34705111 GCGGGCGCTC
Statistics
Matches: 576, Mismatches: 88, Indels: 53
0.80 0.12 0.07
Matches are distributed among these distances:
354 30 0.05
355 186 0.32
356 124 0.22
357 2 0.00
358 1 0.00
360 4 0.01
361 1 0.00
362 2 0.00
363 1 0.00
364 2 0.00
367 61 0.11
368 43 0.07
369 23 0.04
370 2 0.00
372 4 0.01
373 1 0.00
376 1 0.00
377 1 0.00
378 1 0.00
379 1 0.00
380 1 0.00
381 83 0.14
382 1 0.00
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (352 bp):
AGAGGCATAATGCGTAAGCCGGGATCAGCCCGTCCCCCTCTGTGTGCTGCCTGTCCCACTGCCAC
AACCCTCGGTCCGGTTGGGGCTTAGACATGGAATGAACTCTCTATGCCTAAGCCAACCCATGAAA
CAGGAGTGCGGCGCTCAGCCGGTCGGAGAGGCAGAATGCGTAAGCCGGGGATCGCCTGGTCCCCC
CTGCGTGCTATCGATCTTGCTGTCGTAACCCTCGGTCAGGTCCAATCTTAGACTAGGAATGAACT
CCATATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTACGGCC
ACTCAACCGACCAAAGAGGTCGATCAG
Found at i:34705070 original size:26 final size:26
Alignment explanation
Indices: 34705033--34705085 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34705023 CTGGTCCGAT
* *
34705033 CTTAGACTTGGAATGAACTTCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
34705059 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
34705085 C
1 C
34705086 CTAAGACAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:34708304 original size:59 final size:59
Alignment explanation
Indices: 34708222--34708336 Score: 149
Period size: 59 Copynumber: 1.9 Consensus size: 59
34708212 GTCTGATATT
* **
34708222 AGACAAGGAATGAACTCCGTATGCATAAGTCAACCCAAGAAATGAGCGTGCGGGCACTG
1 AGACAAGGAATGAACTCCGTATGCATAAGACAACCCAAGAAACAAGCGTGCGGGCACTG
* * * * * *
34708281 AGACTAGGAGTGAACTCTGTATGCCTAAGACAACCCACGAAACAAGCGTGTGGGCA
1 AGACAAGGAATGAACTCCGTATGCATAAGACAACCCAAGAAACAAGCGTGCGGGCA
34708337 TTCAACCGGT
Statistics
Matches: 47, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
59 47 1.00
ACGTcount: A:0.35, C:0.23, G:0.27, T:0.16
Consensus pattern (59 bp):
AGACAAGGAATGAACTCCGTATGCATAAGACAACCCAAGAAACAAGCGTGCGGGCACTG
Found at i:34708486 original size:26 final size:26
Alignment explanation
Indices: 34708448--34708500 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
34708438 CTGGTTCGAT
34708448 CTTAGACTGGGAATGAAC-CCTGTATG
1 CTTAGACTGGGAATGAACTCC-GTATG
34708474 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
34708500 C
1 C
34708501 CTAAGACAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34708770 original size:159 final size:159
Alignment explanation
Indices: 34708474--34708919 Score: 406
Period size: 159 Copynumber: 2.8 Consensus size: 159
34708464 ACCCTGTATG
** *
34708474 CTTAGACATGGAATGAACTCCGTATGCCTAAGACAACTCGCGAAACGAGTGTACGGGTGCTCAAT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGACAACTCAAGAAACGAGTGTACGGGTGCTCAAC
** *
34708539 CGACCAGAGAGGCAGAATGCGTAAGTCAGGGATCGGCCCGATCCCCCCCTACGTGCTGTCGATCC
66 CGACCAGAGAGGCAGAATGCACAAGCCAGGGATCGGCCCGATCCCCCCCTACGTGCTGTCGATCC
* *
34708604 TGCTGCCACAACCCATGGTTTGATCCGAT
131 CGATGCCACAACCCATGGTTTGATCCGAT
* * * *
34708633 CTTAGAC-TGGGAATGAACTCTGTATGCCTAAGTCAAAC-CAAGAAACGAGTGTGCGGGTGCTGA
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGAC-AACTCAAGAAACGAGTGTACGGGTGCTCA
* * * * * *
34708696 GCC-AGCC-GCAGAGGCATAATGCACAAGCCGGGGATCGGCCCGATCCCCCTCTGCGTGTTGTCG
64 ACCGA-CCAG-AGAGGCAGAATGCACAAGCCAGGGATCGGCCCGATCCCCCCCTACGTGCTGTCG
* * * * * *
34708759 GTCCCGATGCCACAACCCTTGGTCTG-GCTTGGT
127 ATCCCGATGCCACAACCCATGGTTTGATC-CGAT
* * * * * * *
34708792 CTTAGACATGGAATGAACTCCCTATGCCTAAG-CTAACCCACGAAACGGGCGTGCGGGCGCTCAA
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGAC-AACTCAAGAAACGAGTGTACGGGTGCTCAA
* * * * * * * * *
34708856 CCGATCGGAGAGGTAAAATGCGCAAGTC-GAGTACCGGCCCGGT--CCCCCTACGTGCTGTCGAT
65 CCGACCAGAGAGGCAGAATGCACAAGCCAG-GGATCGGCCCGATCCCCCCCTACGTGCTGTCGAT
34708918 CC
129 CC
34708920 TGCTATCACA
Statistics
Matches: 232, Mismatches: 45, Indels: 22
0.78 0.15 0.07
Matches are distributed among these distances:
157 17 0.07
158 9 0.04
159 200 0.86
160 6 0.03
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.20
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGACAACTCAAGAAACGAGTGTACGGGTGCTCAAC
CGACCAGAGAGGCAGAATGCACAAGCCAGGGATCGGCCCGATCCCCCCCTACGTGCTGTCGATCC
CGATGCCACAACCCATGGTTTGATCCGAT
Found at i:34709982 original size:159 final size:158
Alignment explanation
Indices: 34709679--34710182 Score: 401
Period size: 159 Copynumber: 3.2 Consensus size: 158
34709669 GTGGCTCAAA
* * *
34709679 ATCTTAGACTGGAATGAACTCTGTATGCCTAAGCCAACCCAAGAAACGAGCGTGCGGGCGCTCAG
1 ATCTTAGACTGGAATGAACTCTGTATGCATAAGCCAACCCAAGAAACGAGCATGCGGGCGCTCAA
* * * *
34709744 CCGGCCGAAGAGGCAGAATGCACAAGTCGAGGATCAGCCTAGTCCCCCCCTTCGTGCTTTTGATC
66 CCGGCCGAAGAGGCAGAATGCACAAGCCGAGGATCAGCCGAGTCCCCCCCTGCGTGCTGTTGATC
* *
34709809 CTGCTACCGCAACCCTTGGTCCGGTCTG
131 CCGCTACCACAACCCTTGGTCCGGTCTG
* * * *
34709837 ATCTTAGACTGGGAATGAACTCTGTATGCATAAGTCAACCCATGAAACGAGCATGCGGGCGTTGA
1 ATCTTAGACT-GGAATGAACTCTGTATGCATAAGCCAACCCAAGAAACGAGCATGCGGGCGCTCA
** * * *
34709902 ACCGGTTGATA-AGGCATAATGCGCAAGCC-AGGGATCAGCCCGA-TCCCCCTCTGCGTGCTGTT
65 ACCGGCCGA-AGAGGCAGAATGCACAAGCCGA-GGATCAG-CCGAGTCCCCCCCTGCGTGCTGTT
* * * * ** * *
34709964 GGTCCCGCTGCTATAACCCTCAGTTCAG-CTAG
127 GATCCCGCTACCACAACCCTTGGTCCGGTCT-G
** ** * * * * *
34709996 GGCTTAGACATGGAATGAACTCCCTATGCCTAAGCGAACCCATGAAACGGGCATGCAGGCGCTCA
1 ATCTTAGAC-TGGAATGAACTCTGTATGCATAAGCCAACCCAAGAAACGAGCATGCGGGCGCTCA
* ** * * * * * ** *
34710061 GCCGATCGGAGAGGCAGAATGCAGAAGTCGGGGATCGGCCTG-GT-CCCCCCTGAATGCTGTCGA
65 ACCGGCCGAAGAGGCAGAATGCACAAGCCGAGGATCAGCC-GAGTCCCCCCCTGCGTGCTGTTGA
* ** * **
34710124 TCCTGCTGTCGCAACCCTCAGTCCGGT-TCG
129 TCCCGCTACCACAACCCTTGGTCCGGTCT-G
*
34710154 ATCTTAGACTGGGAATGAACTCCGTATGC
1 ATCTTAGACT-GGAATGAACTCTGTATGC
34710183 TTAGACTAGG
Statistics
Matches: 271, Mismatches: 63, Indels: 24
0.76 0.18 0.07
Matches are distributed among these distances:
157 1 0.00
158 75 0.28
159 190 0.70
160 5 0.02
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (158 bp):
ATCTTAGACTGGAATGAACTCTGTATGCATAAGCCAACCCAAGAAACGAGCATGCGGGCGCTCAA
CCGGCCGAAGAGGCAGAATGCACAAGCCGAGGATCAGCCGAGTCCCCCCCTGCGTGCTGTTGATC
CCGCTACCACAACCCTTGGTCCGGTCTG
Found at i:34710185 original size:26 final size:26
Alignment explanation
Indices: 34710156--34710205 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
34710146 CCGGTTCGAT
34710156 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
34710182 CTTAGACTAGGGATGAACTCCGTA
1 CTTAGACTAGGGATGAACTCCGTA
34710206 CATCTAAGTC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:34710469 original size:343 final size:340
Alignment explanation
Indices: 34709839--34711268 Score: 1042
Period size: 343 Copynumber: 4.2 Consensus size: 340
34709829 CCGGTCTGAT
* * * * * * *
34709839 CTTAGACTGGGAATGAACTCTGTATGCATAAGTCAACCCATGAAACGAGCATGCGGGCGTTGAAC
1 CTTAGACAGGG-ATGAACTCCGTACGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAAC
*
34709904 CGGT-TGATAAGGCATAATGCGCAAGCCAGGGATCAGCCCGATCCCCCTCTGCGTGCTGTT-GGT
65 CGGTCCGAT-AGGCATAATGCGCAAGCCAGGGATCAGCCCGATCCCCCTCT-CGTGCTGTTCGGT
* * * * * * * *
34709967 CCCGCTGCTATAACCCTCAGTTCAGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCG
128 CCCGCTACCACAACCCT-TGATCCGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCC
* * * * * * * *
34710032 AACCCATGAAACGGGCATGCAGGCGCTCAGCCGATCGGAGAGGCAGAATGCAG-AAGTCGGGGAT
192 AACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGTCGAAAAGGCAGAATGC-GCAAGCCGAGGAT
* ** * * *
34710096 CGGCCTGGTCCCCCCTGAATGCTGTCGATCCTGCTGTCGCAACCCTCAGTCCGGTTCGATCTTAG
256 CGGCCCGGT-CCCCCTGCGTACTATCGATCCTGCTGTCGCAACCCTCGGTCCGGTTCGATCTTAG
34710161 ACTGGGAATGAACTCCGTATG
320 ACTGGGAATGAACTCCGTATG
** *
34710182 CTTAGACTAGGGATGAACTCCGTACATCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTCAAC
1 CTTAGAC-AGGGATGAACTCCGTACGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAAC
* * * * *
34710247 CGGTCCGATAGGCATAATTCGTAAGCCAGGGATCAGCCTGGTCTCCCTCT-GTG-TGTTACGGAT
65 CGGTCCGATAGGCATAATGCGCAAGCCAGGGATCAGCCCGATCCCCCTCTCGTGCTGTT-CGG-T
* * * *
34710310 CCCGTTGCCACAACCCTTGATCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTATGCC
128 CCCGCTACCACAACCCTTGATCCG-CTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCC
* ** *
34710375 AACCCATGAAACGAGCGTGCGGGTGCTCAGCTAGTCGAAAAGGCAAAATGCGCAAGCCGAGGATC
192 AACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGTCGAAAAGGCAGAATGCGCAAGCCGAGGATC
* * *
34710440 AGCCCGGTCCCTCCTGCGTACTATCGATCCTACTGGTGGTCTTGCTGTCGCAACCCTCGATCTGG
257 GGCCCGGTCCC-CCTGCGTACTATCGA---T-C-------C-TGCTGTCGCAACCCTCGGTCCGG
*
34710505 -TCTGATCTTAAACTGGGAATGAACTCCGTATG
309 TTC-GATCTTAGACTGGGAATGAACTCCGTATG
* * * * * *
34710537 CTTAGACATGGAATGACCTCCGTATGCCTAAGCCAACCCATGAAACGAACGTGCGGTG-GCTCAG
1 CTTAGACA-GGGATGAACTCCGTACGCCTAAGTCAACCCATGAAACGAGCGTGCGG-GCGCTCAA
** * * * * * * *
34710601 CC-AACCGGAGAGGTAGAATGCGTAA-CCCGGGGTCAGCCCGATCCCCCCTGCGTGGTGTCGATC
64 CCGGTCC-GATAGGCATAATGCGCAAGCCAGGGATCAGCCCGAT-CCCCCT-C-TCGTG-C--T-
* * ** * * ** *
34710664 CTACTGCTGGTCCTGCTACCGTAACCC-TAAGTCTGGTCT-GTTCTTAGA-TTGGGAATGAACTC
121 GT--T-C-GGTCCCGCTACCACAACCCTTGA-TC-CG-CTGGGGCTTAGACAT-GGAATGAACTC
* * * * *
34710726 CGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGAGCGCTCAGCCGGTCGAAAAGGTAGAATGC
178 CCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGTCGAAAAGGCAGAATGC
** * ** *
34710791 GCAAGCCGAGGATCGGCCCAATCCCCCT-CTGTGAGCTGTCGATCCTGCTACCGCAACCCTTGGT
243 GCAAGCCGAGGATCGGCCCGGTCCCCCTGC-GT-A-CTATCGATCCTGCTGTCGCAACCCTCGGT
* *
34710855 CC-GATCTATCTTAGACT-GGAATGAACTCC----G
305 CCGGTTCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
34710885 --T--------ATG-----C-T-----TAAGTCAACCCACGAAACGAGCGTGCCGACGCTGAACC
1 CTTAGACAGGGATGAACTCCGTACGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAACC
34710929 GG-CCAGATAGGCATAATGCGCAAGCC-GAGGATCAGCCC-AGTCCCCCTCTACGTGCTG-TCGG
66 GGTCC-GATAGGCATAATGCGCAAGCCAG-GGATCAGCCCGA-TCCCCCTCT-CGTGCTGTTCGG
* * * * *
34710990 TCCCGCTACCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATAAACTCCCTATGTCTAAGG
127 TCCCGCTACCACAACCCTTGATCC-GCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGC
* * * * * * *
34711055 CAACCCATGAAGCG-GCCGTACGGGTGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCGGGGGA
191 CAACCCATGAAACGAG-CGTGCGGGCGCTCAGCCGGTCGAAAAGGCAGAATGCGCAAGCCGAGGA
* * * * * *
34711119 TCGGCTCGGTCCCCCTTGTGTGCTATTGATCCTGCTGTCGCAACCCTCGGTCCGATCCGATCTTA
255 TCGGCCCGGTCCCCC-TGCGTACTATCGATCCTGCTGTCGCAACCCTCGGTCCGGTTCGATCTTA
34711184 GACTGGGAATGAACTCCGTATG
319 GACTGGGAATGAACTCCGTATG
* * * * *
34711206 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGTGGGCGCTCA
1 CTTAGAC-AGGGATGAACTCCGTACGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCA
34711269 GCCATGCCAA
Statistics
Matches: 842, Mismatches: 161, Indels: 168
0.72 0.14 0.14
Matches are distributed among these distances:
315 29 0.03
316 120 0.14
317 17 0.02
318 1 0.00
321 1 0.00
322 1 0.00
323 1 0.00
324 2 0.00
325 4 0.00
326 54 0.06
327 12 0.01
331 1 0.00
332 4 0.00
337 4 0.00
338 1 0.00
340 4 0.00
341 3 0.00
342 10 0.01
343 240 0.29
344 6 0.01
346 2 0.00
347 1 0.00
348 1 0.00
352 12 0.01
353 10 0.01
354 37 0.04
355 121 0.14
356 2 0.00
357 1 0.00
358 3 0.00
362 2 0.00
363 3 0.00
364 8 0.01
365 113 0.13
366 11 0.01
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (340 bp):
CTTAGACAGGGATGAACTCCGTACGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAACC
GGTCCGATAGGCATAATGCGCAAGCCAGGGATCAGCCCGATCCCCCTCTCGTGCTGTTCGGTCCC
GCTACCACAACCCTTGATCCGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
CATGAAACGAGCGTGCGGGCGCTCAGCCGGTCGAAAAGGCAGAATGCGCAAGCCGAGGATCGGCC
CGGTCCCCCTGCGTACTATCGATCCTGCTGTCGCAACCCTCGGTCCGGTTCGATCTTAGACTGGG
AATGAACTCCGTATG
Found at i:34711005 original size:157 final size:158
Alignment explanation
Indices: 34710705--34711206 Score: 433
Period size: 157 Copynumber: 3.2 Consensus size: 158
34710695 TCTGGTCTGT
* * *
34710705 TCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGAGCGCTCAG
1 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGCTCAA
* * * **
34710770 CCGGTCGAAAAGGTAGAATGCGCAAGCCGAGGATCGGCCCAATCCCCCTCTGTGAGCTGTCGATC
66 CCGGCCGAAAAGGCAGAATGCGCAAGCCGAGGATCAGCCCAATCCCCCTCTACGAGCTGTCGATC
* * *
34710835 CTGCTACCGCAACCCTTGGTCCGATCTA
131 CCGCTACCACAACCCTCGGTCCGATCTA
* * *
34710863 TCTTAGACT-GGAATGAACTCCGTATGCTTAAGTCAACCCACGAAACGAGCGTGCCGA-CGCTGA
1 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTG-CGAGCGCTCA
* * * * *
34710926 ACCGGCC-AGATAGGCATAATGCGCAAGCCGAGGATCAGCCCAGTCCCCCTCTACGTGCTGTCGG
65 ACCGGCCGA-AAAGGCAGAATGCGCAAGCCGAGGATCAGCCCAATCCCCCTCTACGAGCTGTCGA
* *
34710990 TCCCGCTACCACAACCCTCGGTCCG-GCTGGG
129 TCCCGCTACCACAACCCTCGGTCCGATCT--A
* * * * * * * * * *
34711021 GCTTAGACAT-GGAATAAACTCCCTATGTCTAAGGCAACCCATGAAGCG-GCCGTACGGGTGCTC
1 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAG-CGTGCGAGCGCTC
* * * * * * * * ** ** * * *
34711084 AGCCGGTCGGAGAGGCAGAATGCGCAAGCGGGGGATCGGCTCGGTCCCCCT-TGTGTGCTATTGA
64 AACCGGCCGAAAAGGCAGAATGCGCAAGCCGAGGATCAGCCCAATCCCCCTCTACGAGCTGTCGA
* ** * *
34711148 TCCTGCTGTCGCAACCCTCGGTCCGATCCGA
129 TCCCGCTACCACAACCCTCGGTCCGAT-CTA
34711179 TCTTAGACTGGGAATGAACTCCGTATGC
1 TCTTAGACTGGGAATGAACTCCGTATGC
34711207 TTAGACTGGG
Statistics
Matches: 274, Mismatches: 59, Indels: 22
0.77 0.17 0.06
Matches are distributed among these distances:
156 3 0.01
157 120 0.44
158 72 0.26
159 78 0.28
160 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (158 bp):
TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGCTCAA
CCGGCCGAAAAGGCAGAATGCGCAAGCCGAGGATCAGCCCAATCCCCCTCTACGAGCTGTCGATC
CCGCTACCACAACCCTCGGTCCGATCTA
Found at i:34711209 original size:26 final size:26
Alignment explanation
Indices: 34711180--34711232 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
34711170 CCGATCCGAT
34711180 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
34711206 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
34711232 C
1 C
34711233 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34712296 original size:159 final size:158
Alignment explanation
Indices: 34711949--34712609 Score: 612
Period size: 159 Copynumber: 4.2 Consensus size: 158
34711939 ACTCCGTATG
* *
34711949 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAGC
1 CTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCTTGCGGGCGCTCAGC
** * * **
34712014 CGATCGGAGAGGCAGAATTCACAAGTTG-GCGATCGGTTCGATCCCCCCTGCGTGCTGTCGATCC
66 CGGCCGGAGAGGCAGAATGCACAAGTCGAG-GATCGGCCCGATCCCCCCTGCGTGCTGTCGATCC
**** * *
34712078 TGCTGTTGCAACCCTCGATCCAATCTGAT
130 TGCTACCACAACCCTCGGTCCGATCTGAT
* * ** * **
34712107 CTTAGTCTGGGAATGAACTTTGTATGCCTAAGCCAACCCACGAAACGAGCTTGCTAGCGCTCAGC
1 CTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCTTGCGGGCGCTCAGC
* * * * * *
34712172 CGGTCGGAGAGGCAGAATGCATAAGCCGAGGATCGGCCCAATTCCCCCCTGCTTGCTATCGATCC
66 CGGCCGGAGAGGCAGAATGCACAAGTCGAGGATCGGCCCGA-TCCCCCCTGCGTGCTGTCGATCC
* * *
34712237 TGCTGCCGCAACCCTCGGTTCGATCTGAT
130 TGCTACCACAACCCTCGGTCCGATCTGAT
* * * *
34712266 CTTAGACTTGGAATGAATTTCGTATGCCTAAGTCAACCCACGAAACAAG-TGTGCGGGCGCTGAG
1 CTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCT-TGCGGGCGCTCAG
* * * * * * * * * *
34712330 CCGGCCGGAGAGGCATAATACGCATGTCGGGGATCGGCTCGGTCCCCTTCTACGTGCTG-CCAGT
65 CCGGCCGGAGAGGCAGAATGCACAAGTCGAGGATCGGCCCGATCCCC-CCTGCGTGCTGTCGA-T
* **
34712394 CCTGCTACCACAGCCCTCGGTCCGA-CTGGGG
128 CCTGCTACCACAACCCTCGGTCCGATCT-GAT
* * * ** * * * *
34712425 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATGCTGGTGCTTAGC
1 CTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCTTGCGGGCGCTCAGC
* ** * * * *
34712490 TGGCCAAAGAGGTAGAATGCGCAAGTC-AGGGATCGGCCCGATCCCTCCTGCATGCTGTCGATCC
66 CGGCCGGAGAGGCAGAATGCACAAGTCGA-GGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCC
* * *
34712554 TGCTACCACAACCCTCGGTTCGGTCCGAT
130 TGCTACCACAACCCTCGGTCCGATCTGAT
* *
34712583 CTTAGACTGGGAATGAACTCTGTATGC
1 CTTAGACTTGGAATGAACTCCGTATGC
34712610 TTAGACTGGG
Statistics
Matches: 401, Mismatches: 92, Indels: 20
0.78 0.18 0.04
Matches are distributed among these distances:
158 152 0.38
159 249 0.62
ACGTcount: A:0.22, C:0.30, G:0.26, T:0.21
Consensus pattern (158 bp):
CTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCTTGCGGGCGCTCAGC
CGGCCGGAGAGGCAGAATGCACAAGTCGAGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCCT
GCTACCACAACCCTCGGTCCGATCTGAT
Found at i:34712553 original size:317 final size:317
Alignment explanation
Indices: 34711949--34712609 Score: 738
Period size: 317 Copynumber: 2.1 Consensus size: 317
34711939 ACTCCGTATG
*
34711949 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAGC
1 CTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAGC
* * * * * *
34712014 CGATCGGAGAGGCAGAATTCACAAGTTGGCGATCGGTTCGATCCCCCCTGCGTGCTGTCGATCCT
66 CGACCGGAGAGGCAGAATACACAAGTCGGCGATCGGCTCGATCCCCCCTACGTGCTGCCGATCCT
**** * * ***
34712079 GCTGTTGCAACCCTCGATCCAATCTGATCTTAGTCTGGGAATGAACTTTGTATGCCTAAGCCAAC
131 GCTACCACAACCCTCGATCCAATCTGAGCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAAC
* * ** * *
34712144 CCACGAAACGAGCTTGCTAGCGCTCAGCCGGTCGGAGAGGCAGAATGCATAAGCCGAGGATCGGC
196 CCACGAAACGAGCATGCTAGCGCTCAGCCGGCCAAAGAGGCAGAATGCACAAGCAGAGGATCGGC
* * * *
34712209 CCAATTCCCCCCTGCTTGCTATCGATCCTGCTGCCGCAACCCTCGGTTCGATCTGAT
261 CCAATTCCCCCCTGCATGCTATCGATCCTGCTACCACAACCCTCGGTTCGATCCGAT
* * * * *
34712266 CTTAGACTTGGAATGAATTTCGTATGCCTAAGTCAACCCACGAAACAAGTGTGCGGGCGCTGAGC
1 CTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAGC
* * * * * * *
34712331 CGGCCGGAGAGGCATAATACGCATGTCGGGGATCGGCTCGGTCCCCTTCTACGTGCTGCC-AGTC
66 CGACCGGAGAGGCAGAATACACAAGTCGGCGATCGGCTCGATCCCC-CCTACGTGCTGCCGA-TC
* * * *
34712395 CTGCTACCACAGCCCTCGGTCCGA-CTGGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGC
129 CTGCTACCACAACCCTCGATCCAATCT-GAGCTTAGAC-TGGGAATGAACTCCCTATGCCTAAGC
* * * * * * * *
34712458 CAACCCATGAAACGGGCATGCTGGTGCTTAGCTGGCCAAAGAGGTAGAATGCGCAAGTCAG-GGA
192 CAACCCACGAAACGAGCATGCTAGCGCTCAGCCGGCCAAAGAGGCAGAATGCACAAG-CAGAGGA
* * * *
34712522 TCGGCCCGA-TCCCTCCTGCATGCTGTCGATCCTGCTACCACAACCCTCGGTTCGGTCCGAT
256 TCGGCCCAATTCCCCCCTGCATGCTATCGATCCTGCTACCACAACCCTCGGTTCGATCCGAT
* *
34712583 CTTAGACTGGGAATGAACTCTGTATGC
1 CTTAGACTTGGAATGAACTCCGTATGC
34712610 TTAGACTGGG
Statistics
Matches: 281, Mismatches: 58, Indels: 10
0.81 0.17 0.03
Matches are distributed among these distances:
317 166 0.59
318 112 0.40
319 3 0.01
ACGTcount: A:0.22, C:0.30, G:0.26, T:0.21
Consensus pattern (317 bp):
CTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAGC
CGACCGGAGAGGCAGAATACACAAGTCGGCGATCGGCTCGATCCCCCCTACGTGCTGCCGATCCT
GCTACCACAACCCTCGATCCAATCTGAGCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAAC
CCACGAAACGAGCATGCTAGCGCTCAGCCGGCCAAAGAGGCAGAATGCACAAGCAGAGGATCGGC
CCAATTCCCCCCTGCATGCTATCGATCCTGCTACCACAACCCTCGGTTCGATCCGAT
Found at i:34713093 original size:365 final size:354
Alignment explanation
Indices: 34712392--34713095 Score: 783
Period size: 365 Copynumber: 2.0 Consensus size: 354
34712382 CGTGCTGCCA
* * *
34712392 GTCCTGCTACCACAGCCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAG
1 GTCCTACTACCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAG
* * * * * * * *
34712457 CCAACCCATGAAACGGGCATGCTGGTGCTTAGCTGGCCAAAGAGGTAGAATGCGCAAGTCAGGGA
66 CCAACCCATGAAACGAGCATACGGGCGCTCAGCCGACCAAAGAGGTAGAATGCGCAAGCCAGGGA
* * *
34712522 TCGGCCCGATCCCTCCTGCATGCTGTCGATCCTGCTACCACAACCCTCGGTTCGGTCCGATCTTA
131 TCGACCCGATCCCTCCTCCATGCTGTCGATCCTGCTACCACAACCCTCGGTCCGGTCCGATCTTA
* * * * *
34712587 GACTGGGAATGAACTCTGTATGCTTAGACTGGGGATAAACTCCGTACACCTAAGTCAACCCATGA
196 GACTAGGAATGAACTCTGTATGCTTAGACTGGGAATAAACTCCGTACACCAAAGCCAACACATGA
* ** * *
34712652 AACGTTTGTGCGGGTGCTCAACCAGCCGGAGAGGCATAATGCGCAAGCCAGGGATCAGCCCGATC
261 AAC-TTCGTGCGGGCACTCAACCAGCCGGAGAGGCAGAATGCGCAAGCCAGAGATCAGCCCGATC
34712717 CCCCTCTGCGTGCTGTTGATCCCGCTATAG
325 CCCCTCTGCGTGCTGTTGATCCCGCTATAG
* *
34712747 GTCCTACTACCACAACCCTCGATCCGGCTGGGGCTTAGACATGGAATGAACT-CCTATGCCTATG
1 GTCCTACTACCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAG
* * *
34712811 CCAAGCCATGAAACGAGCGTACGGGCGCTCAGCCGACCGGAA-AGGTAGAATGCGCAAGCCAGGG
66 CCAACCCATGAAACGAGCATACGGGCGCTCAGCCGACC-AAAGAGGTAGAATGCGCAAGCCAGGG
* * * *
34712875 ATCGACCCGATCCCCCTGCGTCCTACCAATCCTGCTGTTGGTCTTGCTACCGCAACCCTCGGTCC
130 ATCGACCCGAT---CC--C-TCCT-CC-A---TGCTGTCGATCCTGCTACCACAACCCTCGGTCC
* * * **
34712940 GGTCCGATCTTAGTCTAGGAATGAACT-TCGTATGCTTAGACAT-GGAATGAGCTCCGTATGCCA
184 GGTCCGATCTTAGACTAGGAATGAACTCT-GTATGCTTAGAC-TGGGAATAAACTCCGTACACCA
* * * * *
34713003 AAGCCAACATATGAAA-TTAGCGTGCGGGCACTCAGTCGATCTGGAGAGGCAGAATGCGCAAG-C
247 AAGCCAACACATGAAACTT--CGTGCGGGCACTCA-ACCAGCCGGAGAGGCAGAATGCGCAAGCC
* *
34713066 TGAAGATCAGCCCGGTCCCCC-CTGCGTGCT
309 AG-AGATCAGCCCGATCCCCCTCTGCGTGCT
34713096 ACGGATCCTG
Statistics
Matches: 286, Mismatches: 45, Indels: 26
0.80 0.13 0.07
Matches are distributed among these distances:
354 71 0.25
355 50 0.17
357 2 0.01
359 1 0.00
360 4 0.01
361 1 0.00
362 1 0.00
363 2 0.01
364 1 0.00
365 114 0.40
366 39 0.14
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.21
Consensus pattern (354 bp):
GTCCTACTACCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAG
CCAACCCATGAAACGAGCATACGGGCGCTCAGCCGACCAAAGAGGTAGAATGCGCAAGCCAGGGA
TCGACCCGATCCCTCCTCCATGCTGTCGATCCTGCTACCACAACCCTCGGTCCGGTCCGATCTTA
GACTAGGAATGAACTCTGTATGCTTAGACTGGGAATAAACTCCGTACACCAAAGCCAACACATGA
AACTTCGTGCGGGCACTCAACCAGCCGGAGAGGCAGAATGCGCAAGCCAGAGATCAGCCCGATCC
CCCTCTGCGTGCTGTTGATCCCGCTATAG
Found at i:34713169 original size:26 final size:26
Alignment explanation
Indices: 34713133--34713185 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
34713123 CTAGTCTAAT
34713133 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
34713159 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
34713185 C
1 C
34713186 CTAAGTAAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Done.