Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 382 of 402
Found at i:34713858 original size:26 final size:26
Alignment explanation
Indices: 34713820--34713872 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
34713810 GGCTCAAAAT
34713820 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
34713846 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
34713872 C
1 C
34713873 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34714148 original size:159 final size:159
Alignment explanation
Indices: 34713846--34714348 Score: 532
Period size: 159 Copynumber: 3.2 Consensus size: 159
34713836 ACTCCGTATG
* *
34713846 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * ** *
34713911 CGGTCGGAGAGGCAAAATGCACAAGCCGGGGATTGACCTGATCCCCCCCTATGTGCTGTCAATCC
66 CGGTCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCTGGTCCCCCTCTGCGTGCTGCCAATCC
* * *
34713976 GGCTGCCATAACCCTCAGTTCGGTGCAAT
131 TGCTGCCACAACCCTCAGTTCGGTGCGAT
* * * * *
34714005 CTTAGAC-TAGGAATGAACTTCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGTGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * **
34714069 TCGGCCGAAGAGGCATAATGCGCAAGTCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGCCGGTC
65 CCGGTCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCTGGTCCCCCTCTGCGTGCTGCCAATC
* * * **
34714134 CTACTACCACAACCCTC-GGTCTGGTTG-GGG
130 CTGCTGCCACAACCCTCAGTTC-GG-TGCGAT
* * * * *
34714164 CTTAGACATGGAATGAACTCCCTATGCCGAAGCCAACCCACAAAATGGGCGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* *
34714229 CGATCGGAGAGGCAAAATGCGCAAGCCAGGGATCGGCCTGGTCCCCCT-TGCGTGCTGCCAATCC
66 CGGTCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCTGGTCCCCCTCTGCGTGCTGCCAATCC
* * * *
34714293 TGTTGCCGCAACCCTCAGTCCAGT-CTGAT
131 TGCTGCCACAACCCTCAGTTCGGTGC-GAT
*
34714322 CTTAGAC-TGGGAATGAACTTCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
34714349 TGGGCCAAGT
Statistics
Matches: 274, Mismatches: 62, Indels: 17
0.78 0.18 0.05
Matches are distributed among these distances:
157 2 0.01
158 55 0.20
159 214 0.78
160 3 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGTCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCTGGTCCCCCTCTGCGTGCTGCCAATCC
TGCTGCCACAACCCTCAGTTCGGTGCGAT
Found at i:34714575 original size:26 final size:26
Alignment explanation
Indices: 34714537--34714589 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34714527 GGCTTAAAAT
34714537 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
34714563 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
34714589 C
1 C
34714590 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34715842 original size:158 final size:158
Alignment explanation
Indices: 34715275--34715848 Score: 526
Period size: 159 Copynumber: 3.6 Consensus size: 158
34715265 ACTCCGTATG
** *
34715275 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGTGCTTAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGACGCTCAAC
* * * * * *
34715340 CGGTGGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCTAGTCCCCCTCTACGTGCTGTTGATCC
66 CGATCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCAGTCCCCC-CTACGTGCTGTCGATCC
* *
34715405 TACTACTACAACCCTTGATCTAATCCGAT
130 TGCTACCACAACCCTTGATCTAATCCGAT
* * ** * * *
34715434 CTTAGA-TTGGGAATGAACTCCGTATGCATAAGTTAACTCACGAAACAAGCGTGCAGGA-GTTGA
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGC-GGACGCTCA
* * * * * * * * *
34715497 GCCGATCGAAGAGGCATAATGCGTAAGCCGAGGATTGGCCCAGTCTCCCTCTACGTTCTATCGGT
64 ACCGATCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCAGTC-CCCCCTACGTGCTGTCGAT
* * * *** * **
34715562 CCCGCTACCATAACCCTCGAT-TCGGCTGGGG
128 CCTGCTACCACAACCCTTGATCTAATC-CGAT
* * ** * * **
34715593 CTTAGACATGGAATGAACTCCCTATGCCTAAACCAACCCACGAAACGGGCGAGCGGGCGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGACGCTCAAC
* * * * *
34715658 CGATCGGAGAAGCAGAATGCACAAGCCGGGGATCGACCCGGTCCCCCCTACGTGCTGTCGATCCT
66 CGATCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCAGTCCCCCCTACGTGCTGTCGATCCT
* *
34715723 GCTGCCACAACCCTTGGTCTAATCCGAT
131 GCTACCACAACCCTTGATCTAATCCGAT
* * * *
34715751 CTTAGAC-TGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGTGTGCGGACGCTCAA
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGACGCTCAA
* * * * *
34715815 CCGACCAGAGAGGCAGGATGTGTAAGCCGAGGAT
65 CCGATCGGAGAGGCAGAATGCGCAAGCCGAGGAT
34715849 TGAACAGATG
Statistics
Matches: 318, Mismatches: 89, Indels: 17
0.75 0.21 0.04
Matches are distributed among these distances:
157 1 0.00
158 116 0.36
159 195 0.61
160 6 0.02
ACGTcount: A:0.26, C:0.28, G:0.26, T:0.20
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGACGCTCAAC
CGATCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCAGTCCCCCCTACGTGCTGTCGATCCT
GCTACCACAACCCTTGATCTAATCCGAT
Found at i:34715850 original size:317 final size:318
Alignment explanation
Indices: 34715274--34715850 Score: 791
Period size: 317 Copynumber: 1.8 Consensus size: 318
34715264 AACTCCGTAT
* * * * *
34715274 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGTGCTTAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAACCAACCCACGAAACAAGCGAGCGGGCGCTCAA
* * * * * * * *
34715339 CCGGTGGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCTAGTCCCCCTCTACGTGCTGTTGATC
66 CCGATCGGAGAAGCAGAATGCACAAGCCGGGGATCGACCCAGTCCCCCTCTACGTGCTGTCGATC
* * * *
34715404 CTACTACTACAACCCTTGATCTAATCCGATCTTAGATTGGGAATGAACTCCGTATGCATAAGTTA
131 CTACTACCACAACCCTTGATCTAATCCGATCTTAGACTGGGAATGAACTCCATATGCATAAGTCA
* * * * * *
34715469 ACTCACGAAACAAGCGTGCAGGAGTTGAGCCGATCGAAGAGGCATAATGCGTAAGCCGAGGATTG
196 ACCCACGAAACAAGCGTGCAGGAGCTCAACCGACCGAAGAGGCAGAATGCGTAAGCCGAGGATTG
34715534 GCCCAGTCTCCCTCTACGTTCTATCGGTCCCGCTACCATAACCCTCGATTCGGCTGGG
261 GCCCAGTCTCCCTCTACGTTCTATCGGTCCCGCTACCATAACCCTCGATTCGGCTGGG
** *
34715592 GCTTAGACATGGAATGAACTCCCTATGCCTAAACCAACCCACGAAACGGGCGAGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAACCAACCCACGAAACAAGCGAGCGGGCGCTCAA
* *
34715657 TCGATCGGAGAAGCAGAATGCACAAGCCGGGGATCGACCCGGTCCCCC-CTACGTGCTGTCGATC
66 CCGATCGGAGAAGCAGAATGCACAAGCCGGGGATCGACCCAGTCCCCCTCTACGTGCTGTCGATC
* * * *
34715721 CTGCTGCCACAACCCTTGGTCTAATCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGTCA
131 CTACTACCACAACCCTTGATCTAATCCGATCTTAGACTGGGAATGAACTCCATATGCATAAGTCA
* * * *
34715786 ACCCACGAAACGAGTGTGC-GGACGCTCAACCGACC-AGAGAGGCAGGATGTGTAAGCCGAGGAT
196 ACCCACGAAACAAGCGTGCAGGA-GCTCAACCGACCGA-AGAGGCAGAATGCGTAAGCCGAGGAT
34715849 TG
259 TG
34715851 AACAGATGGT
Statistics
Matches: 221, Mismatches: 36, Indels: 5
0.84 0.14 0.02
Matches are distributed among these distances:
316 4 0.02
317 121 0.55
318 96 0.43
ACGTcount: A:0.26, C:0.28, G:0.26, T:0.20
Consensus pattern (318 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAACCAACCCACGAAACAAGCGAGCGGGCGCTCAA
CCGATCGGAGAAGCAGAATGCACAAGCCGGGGATCGACCCAGTCCCCCTCTACGTGCTGTCGATC
CTACTACCACAACCCTTGATCTAATCCGATCTTAGACTGGGAATGAACTCCATATGCATAAGTCA
ACCCACGAAACAAGCGTGCAGGAGCTCAACCGACCGAAGAGGCAGAATGCGTAAGCCGAGGATTG
GCCCAGTCTCCCTCTACGTTCTATCGGTCCCGCTACCATAACCCTCGATTCGGCTGGG
Found at i:34716669 original size:26 final size:26
Alignment explanation
Indices: 34716633--34716685 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34716623 TCAGTCTGAT
34716633 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
34716659 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
34716685 C
1 C
34716686 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:34717367 original size:159 final size:158
Alignment explanation
Indices: 34717171--34717475 Score: 371
Period size: 159 Copynumber: 1.9 Consensus size: 158
34717161 CCGGTCTGAT
* * *
34717171 CTTAGACTGGGAATGAACTCCGTAAGCCTAAGTCAACCCACAAAACGAGCGTGCAGGCACTGAGC
1 CTTAGACTGGGAATGAACTCCCTAAGCCTAAGCCAACCCACAAAACGAGCGTGCAGGCACTCAGC
* * * *
34717236 CGGCCGAAGAGGCATAATGCCCAAGCCGGGGATCGGCCAGGTCCCCCTCTACGTGCTGCC-AGTC
66 CGGCCGAAGAGACAGAATGCCCAAGCCGAGGATCGGCCAGATCCCCC-CTACGTGCTGCCGA-TC
34717300 CCGCTGCCGCAACCCTCGATCCAGCTGGGG
129 CCGCTGCCGCAACCCTCGATCCAGCTGGGG
* ** * * * *
34717330 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCCTAAGCCTAAGCCAACCCACAAAACGAGCGTGCAGGCACTCAG
* * * * * *
34717394 CCGGTCGGAGAGACAGAATGCGCAAGCCGAGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCC
65 CCGGCCGAAGAGACAGAATGCCCAAGCCGAGGATCGGCCAGATCCCCCCTACGTGCTGCCGATCC
* *
34717459 TGCTGCTGCAACCCTCG
130 CGCTGCCGCAACCCTCG
34717476 GTCTGATCCG
Statistics
Matches: 122, Mismatches: 22, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
158 28 0.23
159 93 0.76
160 1 0.01
ACGTcount: A:0.22, C:0.33, G:0.29, T:0.16
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCCTAAGCCTAAGCCAACCCACAAAACGAGCGTGCAGGCACTCAGC
CGGCCGAAGAGACAGAATGCCCAAGCCGAGGATCGGCCAGATCCCCCCTACGTGCTGCCGATCCC
GCTGCCGCAACCCTCGATCCAGCTGGGG
Found at i:34718217 original size:26 final size:26
Alignment explanation
Indices: 34718179--34718231 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34718169 GGCTCAAAAT
*
34718179 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCATATG
34718205 CTTAGACAT-GGAATGAACTTCATATG
1 CTTAGAC-TGGGAATGAACTTCATATG
34718231 C
1 C
34718232 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCATATG
Found at i:34718440 original size:158 final size:159
Alignment explanation
Indices: 34718205--34718568 Score: 396
Period size: 158 Copynumber: 2.3 Consensus size: 159
34718195 ACTTCGTATG
* * *
34718205 CTTAGACATGGAATGAACTTCATATGCCTAAGCCAACCCACGAAACGAGTGTACGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCATATGCATAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGC
* ** * * * *
34718270 CGACCGGAGAGGCAGAATGCGCAAG-CTGGGGATCAGCCCGATCCTCCT-TGCGTGTTGTCGATC
66 CGAACAAAGAGGCAGAATGCACAAGTC-GGGGATCAGCCCGATCCCCCTCCGCGTGCTGTCGATC
34718333 CTACTACCGCAACCCTCGGTCTGGTCGGAT
130 CTACTACCGCAACCCTCGGTCTGGTCGGAT
* * ** *
34718363 CTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGTGGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCATATGCATAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
**
34718427 CCGAACAAAGAGGCCTAATGCACAAGTCGGGGATCAGCCCGATCCCCCTCCGCGTGCTGTCGAT-
65 CCGAACAAAGAGGCAGAATGCACAAGTCGGGGATCAGCCCGATCCCCCTCCGCGTGCTGTCGATC
* * * * * * *
34718491 CTCGCTGCCACAACCCTTGGTCCGAAT-GGGT
130 CT-ACTACCGCAACCCTCGGTCTG-GTCGGAT
* * * * *
34718522 CTTAGACATGCAATAAACTCCCTATGCCTAAGCCAAACCACGAAACG
1 CTTAGACATGGAATGAACTCCATATGCATAAGCCAACCCACGAAACG
34718569 GGCGCGCGGG
Statistics
Matches: 170, Mismatches: 30, Indels: 11
0.81 0.14 0.05
Matches are distributed among these distances:
157 1 0.01
158 96 0.56
159 71 0.42
160 2 0.01
ACGTcount: A:0.26, C:0.30, G:0.26, T:0.19
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCCATATGCATAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGC
CGAACAAAGAGGCAGAATGCACAAGTCGGGGATCAGCCCGATCCCCCTCCGCGTGCTGTCGATCC
TACTACCGCAACCCTCGGTCTGGTCGGAT
Found at i:34719089 original size:26 final size:26
Alignment explanation
Indices: 34719060--34719112 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34719050 CTGGTCCGAT
34719060 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
34719086 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
34719112 C
1 C
34719113 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34720603 original size:184 final size:184
Alignment explanation
Indices: 34720288--34720651 Score: 489
Period size: 184 Copynumber: 2.0 Consensus size: 184
34720278 TCTGGCTGGG
* * *
34720288 GCTTATACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAAAGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAAGAGCGTGCGGGCACTCAG
* *
34720353 TCGATCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCCTACGTGCTATCGATCC
66 CCGATCGGAGAGGAAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCCTACGTGCTATCGATCC
* * *
34720418 TACTGCCGCAACCCTCGGTCCAG-TCTGATCTTAGACTGGGAATGAACTCCACAT
131 TACTACCACAACCCTCGGTCCAGTTC-GATCTTAGACTAGGAATGAACTCCACAT
* * *
34720472 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCACTTAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAAGAGCGTGCGGGCACTCAG
* * * * * ** * *
34720537 CCGGTCGGAGAGGAAGAATGCGTAATCCAGGGATTGGCCC-AGTCCCCCCTGTGTGTTGTCGATC
66 CCGATCGGAGAGGAAGAATGCGCAAGCCAGGGATCGACCCGA-TCCCCCCTACGTGCTATCGATC
* **
34720601 CTACTATCACAACCCTCGGTCTGGTTCGATCTTAGACTAGGAATGAACTCC
130 CTACTACCACAACCCTCGGTCCAGTTCGATCTTAGACTAGGAATGAACTCC
34720652 GTATGCCTAA
Statistics
Matches: 155, Mismatches: 23, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
183 1 0.01
184 152 0.98
185 2 0.01
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.21
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAAGAGCGTGCGGGCACTCAG
CCGATCGGAGAGGAAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCCTACGTGCTATCGATCC
TACTACCACAACCCTCGGTCCAGTTCGATCTTAGACTAGGAATGAACTCCACAT
Found at i:34720975 original size:26 final size:26
Alignment explanation
Indices: 34720925--34720977 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
34720915 CCAGTCCGAT
**
34720925 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
34720951 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
34720977 C
1 C
34720978 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34721858 original size:158 final size:158
Alignment explanation
Indices: 34721565--34721875 Score: 356
Period size: 158 Copynumber: 2.0 Consensus size: 158
34721555 CTCTCCGTAT
** * **
34721565 GCTTAGACATGGAATGAACTCTGTATGCCTAATCCAACCCATGAAACGAGCGTACGGGAGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTACGGGAGCTCAG
* ** * ** * * *
34721630 CCAGTTGGAGAGGTAGAATTGGTAAGCCAGGGATTGGCCCGGTCCCCCTCTGCATGCTGCCATCC
66 CCAGTCGGAGAGACAGAATTGGCAAGCCAAAGATCGGCCCGGTCCCCCACTACATGCTGCCATCC
34721695 CGCTGCCACAACCCTCGGTCCGGCTAGG
131 CGCTGCCACAACCCTCGGTCCGGCTAGG
* * * *
34721723 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCTAACCCACAAAACGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTACGGGAGCTCAG
* * * * * *
34721788 TCGGTCGGAGAGACAGAA-TGCGCAAGTCAAAGATCGGCTCGGT-CCCCACTACGTGCTGTCGAT
66 CCAGTCGGAGAGACAGAATTG-GCAAGCCAAAGATCGGCCCGGTCCCCCACTACATGCTG-CCAT
* *
34721851 CCTGCTGCCGCAACCCTCGGTCCGG
129 CCCGCTGCCACAACCCTCGGTCCGG
34721876 TTCGATCTTC
Statistics
Matches: 125, Mismatches: 26, Indels: 4
0.81 0.17 0.03
Matches are distributed among these distances:
157 14 0.11
158 111 0.89
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTACGGGAGCTCAG
CCAGTCGGAGAGACAGAATTGGCAAGCCAAAGATCGGCCCGGTCCCCCACTACATGCTGCCATCC
CGCTGCCACAACCCTCGGTCCGGCTAGG
Found at i:34722115 original size:26 final size:26
Alignment explanation
Indices: 34722079--34722131 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34722069 CTGGTTCGAT
*
34722079 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
34722105 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
34722131 C
1 C
34722132 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34722127 original size:197 final size:197
Alignment explanation
Indices: 34721792--34722353 Score: 575
Period size: 197 Copynumber: 2.9 Consensus size: 197
34721782 GCTCAGTCGG
**
34721792 TCGGAGAGACAGAATGCGCAAGTCAAAGATCGGCTCGGTCCCCACTACGTGCTGTCGATCCTGCT
1 TCGGAGAGACAGAATGCGCAAGTCAAAGATCGGCTCGGTCCCCACTACGTGCTACCGATCCTGCT
* *
34721857 GCCGCAACCCTCGGTCCGGTTCGATCTTCGACTGGGAATGAATTCCGTATGCTTAGACTAGGGAT
66 GCCGCAACCCTCGGTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGGAT
34721922 GAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCC
131 GAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCC
34721987 AA
196 AA
* * ** * *
34721989 TCGGAGAGGCAGAATGTGCAAGTCAGGGATC-GATCCGGTCCCTC-CTGCGTGCTACCGATCCTG
1 TCGGAGAGACAGAATGCGCAAGTCAAAGATCGGCT-CGGTCCC-CACTACGTGCTACCGATCCTG
* * * *
34722052 CTGTCGCAACCCTCGGTCTGGTTCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGG
64 CTGCCGCAACCCTCGGTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGG
** * * * *
34722117 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCATGCGGGCACTTAACCGGTC----A--
129 ATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGTCGGAGAGG
34722176 --AA
194 CCAA
* * * * *** * * * *
34722178 ---GA-AG-TAGAATACACAAGCCGGGGATTGGCTCGGTCCCCCCTGCGCGC-AGCCGATCCTGC
1 TCGGAGAGACAGAATGCGCAAGTCAAAGATCGGCTCGGTCCCCACTACGTGCTA-CCGATCCTGC
* * * * * * *
34722237 TGCAGCAAACCTTGGTCCGGTCCGATCTTAGACTAGGAATGAACTCTGT-TGGTTTAGAC-ATGG
65 TGCCGCAACCCTCGGTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTAT-GCTTAGACTA-GG
* * * *
34722300 AATGAACTCGGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAGC
128 GATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
34722354 TAATCGAAAA
Statistics
Matches: 308, Mismatches: 50, Indels: 27
0.80 0.13 0.07
Matches are distributed among these distances:
183 3 0.01
184 132 0.43
185 4 0.01
186 2 0.01
189 2 0.01
193 1 0.00
196 2 0.01
197 161 0.52
198 1 0.00
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (197 bp):
TCGGAGAGACAGAATGCGCAAGTCAAAGATCGGCTCGGTCCCCACTACGTGCTACCGATCCTGCT
GCCGCAACCCTCGGTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGGAT
GAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCC
AA
Found at i:34722371 original size:184 final size:183
Alignment explanation
Indices: 34722023--34722472 Score: 453
Period size: 184 Copynumber: 2.5 Consensus size: 183
34722013 AGGGATCGAT
* * * *
34722023 CCGGTCCCTCCTGCGTGCTA-CCGATCCTGCTGTCGCAACCCTCGGTCTGGTTCGATCTTAGATT
1 CCGGTCCCCCCTGCGTGC-AGCCGATCCTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACT
* * *
34722087 GGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACA
65 AGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACA
* ** **
34722152 AGCATGCGGGCACTTAACCGGTCAAAGAAGTAGAATACACAAGCCGGGGATTGG
130 AGCATGCGGGCACTCAACCAATCAAAGAAGTAGAATACACAAGCCGGGGACCGG
* * *
34722206 CTCGGTCCCCCCTGCGCGCAGCCGATCCTGCTG-CAGCAAACCTTGGTCCGGTCCGATCTTAGAC
1 C-CGGTCCCCCCTGCGTGCAGCCGATCCTGCTGTC-GCAACCCTCGGTCCGGTCCGATCTTAGAC
* * *
34722270 TAGGAATGAACTCTGT-TGGTTTAGACAT-GGAATGAACTCGGTATGCCTAAGCCAACCCACGAA
64 TAGGAATGAACTCCGTAT-GCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAA
** * ** * * * ** *
34722333 ATGAGCGTGCGGGTGCTCAGCTAATCGAAA-AGGTAGAATGTATAAGCCGGGGACCGG
127 ACAAGCATGCGGGCACTCAACCAATC-AAAGAAGTAGAATACACAAGCCGGGGACCGG
* * * * * * * *
34722390 CCTGAT-CCCCCTACGTGCTGTCGATCTTGTTGTCGCAACCCTCAGTCCGATCCGATCTTAGACT
1 CC-GGTCCCCCCTGCGTGCAGCCGATCCTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACT
*
34722454 AGGAATGAACTACGTATGC
65 AGGAATGAACTCCGTATGC
34722473 CTAAGTCAAC
Statistics
Matches: 215, Mismatches: 43, Indels: 18
0.78 0.16 0.07
Matches are distributed among these distances:
183 65 0.30
184 146 0.68
185 4 0.02
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.22
Consensus pattern (183 bp):
CCGGTCCCCCCTGCGTGCAGCCGATCCTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTA
GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAA
GCATGCGGGCACTCAACCAATCAAAGAAGTAGAATACACAAGCCGGGGACCGG
Found at i:34722702 original size:159 final size:158
Alignment explanation
Indices: 34722455--34722750 Score: 353
Period size: 159 Copynumber: 1.9 Consensus size: 158
34722445 TCTTAGACTA
* * * * * * *
34722455 GGAATGAACTACGTATGCCTAAGTCAACCCATGAAACGATCGTTCGGGCGTTGAGCCGACCGAAG
1 GGAATGAACTACCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGACCGAAG
* * * * * *
34722520 AGGCATAATGCGCAAGCTGGGGATCAGATC-GGTCCCCCTCTATGTGCTACCGGTCCCGCTGCCA
66 AGGCAAAATGCGCAAGCTAGGGATC-GACCTGGTCCCCC-CTACGTGCTACCGATCCCGCTACCA
34722584 TAACCCTCGTTCCGGTTGGGGCTTAGAAAT
129 TAACCCTCGTTCCGGTTGGGGCTTAGAAAT
* * * * *
34722614 GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTACGGGTGCTCAGCCGATCGGAG
1 GGAATGAACTACCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGACCGAAG
* * * *
34722679 AGGCAAAATGCGTAAGGC-AGGGATCGGCCTGGTCCCCCCTACGTGCTATCGATCCTGCTACCAT
66 AGGCAAAATGCGCAA-GCTAGGGATCGACCTGGTCCCCCCTACGTGCTACCGATCCCGCTACCAT
34722743 AACCCTCG
130 AACCCTCG
34722751 GTCTAGTCCG
Statistics
Matches: 113, Mismatches: 22, Indels: 5
0.81 0.16 0.04
Matches are distributed among these distances:
158 31 0.27
159 80 0.71
160 2 0.02
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (158 bp):
GGAATGAACTACCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGACCGAAG
AGGCAAAATGCGCAAGCTAGGGATCGACCTGGTCCCCCCTACGTGCTACCGATCCCGCTACCATA
ACCCTCGTTCCGGTTGGGGCTTAGAAAT
Found at i:34722799 original size:26 final size:26
Alignment explanation
Indices: 34722763--34722815 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
34722753 CTAGTCCGAT
34722763 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
34722789 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
34722815 C
1 C
34722816 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:34723171 original size:26 final size:26
Alignment explanation
Indices: 34723142--34723195 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
34723132 TCCAGTCCGA
*
34723142 GCTTAGAC-TAAGAATGAATTCCGTAT
1 GCTTAGACAT-AGAATGAACTCCGTAT
*
34723168 GCTTAGACATGGAATGAACTCCGTAT
1 GCTTAGACATAGAATGAACTCCGTAT
34723194 GC
1 GC
34723196 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (26 bp):
GCTTAGACATAGAATGAACTCCGTAT
Found at i:34723648 original size:26 final size:26
Alignment explanation
Indices: 34723612--34723664 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
34723602 CTGGTCTGAT
34723612 CTTAGACTGGGAATGAAATCCGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
* * *
34723638 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
34723664 C
1 C
34723665 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCGTATG
Found at i:34724281 original size:26 final size:26
Alignment explanation
Indices: 34724250--34724302 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34724240 CTGATATGAT
34724250 CTTAGAC-TGGGAATGAACTCCATATG
1 CTTAGACAT-GGAATGAACTCCATATG
*
34724276 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCATATG
34724302 C
1 C
34724303 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:34725655 original size:158 final size:159
Alignment explanation
Indices: 34725356--34726171 Score: 699
Period size: 158 Copynumber: 5.2 Consensus size: 159
34725346 ACTTCGTATG
* * * * ** * *
34725356 CTTAGACAT-GGAATGAACTTCGCATGCTTAAGCCAACCCATGAAATAAGCGTGCGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTACGGGCGCTAAG
* * ** * *
34725420 CCGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCAACCC-GGTCCCCC-CTGCGTGCTGTCAAT
65 CCGATCGAAGAGGCAGAATGCGCAAGCC-GGGATCGGCCCAGATCCCCCTCTGCGTGCTGTCGAT
* * * *
34725483 CCTGCTACCGCAACCCTTGGTTCGGTCCGAT
129 CCCGCTGCCACAACCCTTGGTCCGGTCCGAT
* * * **
34725514 CTTAGACTGGGAATGAACTCTGTATGCATAAGTCAACCCACGAAACGAACGTGTGGGCGCTAAGC
1 CTTAGACTGGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTACGGGCGCTAAGC
* * * * * * * *
34725579 TGATCGAAGAGGTATAATGGGCAAGCTGGGATCGGCCCAG-TCCCCCTCTGCGTGATATCGGTCC
66 CGATCGAAGAGGCAGAATGCGCAAGCCGGGATCGGCCCAGATCCCCCTCTGCGTGCTGTCGATCC
** ** **
34725643 CGCCACCACAACCCTTGGTCCGGTAGGGG
131 CGCTGCCACAACCCTTGGTCCGGTCCGAT
* * * ** * ** * *
34725672 CTTAGACAT-GAAATGAACTCCCTATGCCTAAGCCAACCCATAAAACGGGTATACGGGTGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTACGGGCGCTAAG
* * *
34725736 CCGA-CCACAGAGGCAGAATGCACAAGCTGGGGATCGGCCC-GATCCCCC-CTGCGTGCTGTCGA
65 CCGATCGA-AGAGGCAGAATGCGCAAGC-CGGGATCGGCCCAGATCCCCCTCTGCGTGCTGTCGA
* ** *
34725798 TCCTGCTGCTGCAACCCTTGGTCCAGTCCGAT
128 TCCCGCTGCCACAACCCTTGGTCCGGTCCGAT
* * * *
34725830 CTTAGACTGGGAATGAATTTCGTATGCATAAGTCAACCCACGAAACGAGCGTACGGGCGCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTACGGGCGCTAAGC
* * * * *
34725895 CGGTCGAAGAGGCATAATGCGCAAGCCGGGATCGGCTCAG-T-CCCCTCTGCGTGCTGTTGGTCC
66 CGATCGAAGAGGCAGAATGCGCAAGCCGGGATCGGCCCAGATCCCCCTCTGCGTGCTGTCGATCC
* * * * **
34725958 CGCTGCCACAACCCTCGGTTC-GACTGGGG
131 CGCTGCCACAACCCTTGGTCCGGTC-CGAT
* * * *
34725987 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCTACGAAACGGGCGTACGGGCGCTCAA
1 CTTAGAC-TGGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTACGGGCGCT-AA
* * * * * *
34726051 -CCTACCGGAGAGGTAGAATGCGTAAGCCGAGGATCGG-CCTGATCCCCCT-TGCGTGCTGTCGA
64 GCCGATCGAAGAGGCAGAATGCGCAAGCCG-GGATCGGCCCAGATCCCCCTCTGCGTGCTGTCGA
* * * *
34726113 TCCTGCTGCCACAACCCTCGGTCCGATCTGAT
128 TCCCGCTGCCACAACCCTTGGTCCGGTCCGAT
34726145 CTTAGACTGGGAATGAACTCCGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
34726172 TTAGACTGGG
Statistics
Matches: 515, Mismatches: 124, Indels: 38
0.76 0.18 0.06
Matches are distributed among these distances:
156 6 0.01
157 139 0.27
158 344 0.67
159 26 0.05
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (159 bp):
CTTAGACTGGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTACGGGCGCTAAGC
CGATCGAAGAGGCAGAATGCGCAAGCCGGGATCGGCCCAGATCCCCCTCTGCGTGCTGTCGATCC
CGCTGCCACAACCCTTGGTCCGGTCCGAT
Found at i:34725928 original size:316 final size:313
Alignment explanation
Indices: 34725428--34726171 Score: 968
Period size: 315 Copynumber: 2.4 Consensus size: 313
34725418 AGCCGGTCGG
* ** * * *
34725428 AGAGGCAGAATGCGCAAGCCAGGGATCAACCCGGTCCCCCCTGCGTGCTGTCAATCCTGCTACCG
1 AGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCCTGCTGCCG
* *
34725493 CAACCCTTGGTTCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCATAAGTCAACCCACGAA
66 CAACCCTTGG-TCCGTCCGATCTTAGACTGGGAATGAATTC-GTATGCATAAGTCAACCCACGAA
** * * * *
34725558 ACGAACGTGTGGGCGCTAAGCTGATCGAAGAGGTATAATGGGCAAGCTGGGATCGGCCCAGTCCC
129 ACGAACGTACGGGCGCTAAGCCGATCGAAGAGGCATAATGCGCAAGCCGGGATCGGCCCAGT-CC
* *
34725623 CCTCTGCGTGATATCGGTCCCGCCACCACAACCCTTGGTCCG-GTAGGGGCTTAGACATGAAATG
193 CCTCTGCGTGATATCGGTCCCGCCACCACAACCCTCGGTCCGACT-GGGGCTTAGACATGAAATG
* * * *
34725687 AACTCCCTATGCCTAAGCCAACCCATAAAACGGGTATACGGGTGCTCAGCCGACCAC
257 AACTCCCTATGCCTAAGCCAACCCACAAAACGGGCATACGGGCGCTCAACCGACCAC
* * *
34725744 AGAGGCAGAATGCACAAGCTGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCCTGCTGCTG
1 AGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCCTGCTGCCG
34725809 CAACCCTTGGTCCAGTCCGATCTTAGACTGGGAATGAATTTCGTATGCATAAGTCAACCCACGAA
66 CAACCCTTGGTCC-GTCCGATCTTAGACTGGGAATGAA-TTCGTATGCATAAGTCAACCCACGAA
* * * *
34725874 ACGAGCGTACGGGCGCTGAGCCGGTCGAAGAGGCATAATGCGCAAGCCGGGATCGGCTCAGTCCC
129 ACGAACGTACGGGCGCTAAGCCGATCGAAGAGGCATAATGCGCAAGCCGGGATCGGCCCAGTCCC
* * * ** * *
34725939 CTCTGCGTGCTGTTGGTCCCGCTGCCACAACCCTCGGTTCGACTGGGGCTTAGACATGGAATGAA
194 CTCTGCGTGATATCGGTCCCGCCACCACAACCCTCGGTCCGACTGGGGCTTAGACATGAAATGAA
* * * * **
34726004 CTCCCTATGCCTAAGCCAACCTACGAAACGGGCGTACGGGCGCTCAACCTACCGG
259 CTCCCTATGCCTAAGCCAACCCACAAAACGGGCATACGGGCGCTCAACCGACCAC
* * * * * *
34726059 AGAGGTAGAATGCGTAAGCCGAGGATCGGCCTGATCCCCCTTGCGTGCTGTCGATCCTGCTGCCA
1 AGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCCTGCTGCCG
* * *
34726124 CAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGC
66 CAACCCTTGGTCCG-TCCGATCTTAGACTGGGAATGAA-TTCGTATGC
34726172 TTAGACTGGG
Statistics
Matches: 371, Mismatches: 53, Indels: 9
0.86 0.12 0.02
Matches are distributed among these distances:
314 1 0.00
315 202 0.54
316 166 0.45
317 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (313 bp):
AGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCCTGCTGCCG
CAACCCTTGGTCCGTCCGATCTTAGACTGGGAATGAATTCGTATGCATAAGTCAACCCACGAAAC
GAACGTACGGGCGCTAAGCCGATCGAAGAGGCATAATGCGCAAGCCGGGATCGGCCCAGTCCCCT
CTGCGTGATATCGGTCCCGCCACCACAACCCTCGGTCCGACTGGGGCTTAGACATGAAATGAACT
CCCTATGCCTAAGCCAACCCACAAAACGGGCATACGGGCGCTCAACCGACCAC
Found at i:34726111 original size:315 final size:314
Alignment explanation
Indices: 34725355--34726171 Score: 1021
Period size: 316 Copynumber: 2.6 Consensus size: 314
34725345 AACTTCGTAT
* * *** *
34725355 GCTTAGACATGGAATGAACTTCGC-ATGCTTAAGCCAACCCATGAAATAAGCGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAAC-TCCCTATGCCTAAGCCAACCCATGAAACGGGCGTACGGGCGCTCA
** ** * *
34725419 GCCGGTCGGAGAGGCAGAATGCGCAAGCC-AGGGATCAACCCGGTCCCCCCTGCGTGCTGTCAAT
65 GCCGACCGGAGAGGCAGAATGCGCAAGCCGA-GGATCGGCCCGATCCCCCCTGCGTGCTGTCGAT
* * *
34725483 CCTGCTACCGCAACCCTTGGTTCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCATAAGTC
129 CCTGCTGCCGCAACCCTTGG-TCCGTCCGATCTTAGACTGGGAATGAATTC-GTATGCATAAGTC
** * * * *
34725548 AACCCACGAAACGAACGTGTGGGCGCTAAGCTGATCGAAGAGGTATAATGGGCAAGCTGGGATCG
192 AACCCACGAAACGAACGTACGGGCGCTAAGCCGATCGAAGAGGCATAATGCGCAAGCCGGGATCG
* *
34725613 GCCCAGTCCCCCTCTGCGTGATATCGGTCCCGCCACCACAACCCTTGGTCCGGTAGGG
257 GCCCAGTCCCCCTCTGCGTGATATCGGTCCCGCCACCACAACCCTCGGTCCGCTAGGG
* * ** *
34725671 GCTTAGACATGAAATGAACTCCCTATGCCTAAGCCAACCCATAAAACGGGTATACGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTACGGGCGCTCAG
** * * *
34725736 CCGACCACAGAGGCAGAATGCACAAGCTGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCC
66 CCGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCC
*
34725801 TGCTGCTGCAACCCTTGGTCCAGTCCGATCTTAGACTGGGAATGAATTTCGTATGCATAAGTCAA
131 TGCTGCCGCAACCCTTGGTCC-GTCCGATCTTAGACTGGGAATGAA-TTCGTATGCATAAGTCAA
* * *
34725866 CCCACGAAACGAGCGTACGGGCGCTGAGCCGGTCGAAGAGGCATAATGCGCAAGCCGGGATCGGC
194 CCCACGAAACGAACGTACGGGCGCTAAGCCGATCGAAGAGGCATAATGCGCAAGCCGGGATCGGC
* * * * ** *
34725931 TCAGT-CCCCTCTGCGTGCTGTTGGTCCCGCTGCCACAACCCTCGGTTCGACT-GGG
259 CCAGTCCCCCTCTGCGTGATATCGGTCCCGCCACCACAACCCTCGGTCCG-CTAGGG
* * *
34725986 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCTACGAAACGGGCGTACGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTACGGGCGCTCAG
* * * * *
34726051 CCTACCGGAGAGGTAGAATGCGTAAGCCGAGGATCGGCCTGATCCCCCTTGCGTGCTGTCGATCC
66 CCGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCC
* * * *
34726116 TGCTGCCACAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGC
131 TGCTGCCGCAACCCTTGGTCCG-TCCGATCTTAGACTGGGAATGAA-TTCGTATGC
34726172 TTAGACTGGG
Statistics
Matches: 427, Mismatches: 68, Indels: 13
0.84 0.13 0.03
Matches are distributed among these distances:
314 1 0.00
315 205 0.48
316 219 0.51
317 2 0.00
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.20
Consensus pattern (314 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTACGGGCGCTCAG
CCGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCC
TGCTGCCGCAACCCTTGGTCCGTCCGATCTTAGACTGGGAATGAATTCGTATGCATAAGTCAACC
CACGAAACGAACGTACGGGCGCTAAGCCGATCGAAGAGGCATAATGCGCAAGCCGGGATCGGCCC
AGTCCCCCTCTGCGTGATATCGGTCCCGCCACCACAACCCTCGGTCCGCTAGGG
Found at i:34726174 original size:26 final size:26
Alignment explanation
Indices: 34726145--34726197 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
34726135 CCGATCTGAT
34726145 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
34726171 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
34726197 C
1 C
34726198 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34726609 original size:159 final size:159
Alignment explanation
Indices: 34726315--34726611 Score: 339
Period size: 159 Copynumber: 1.9 Consensus size: 159
34726305 ATCGATCCCG
* *
34726315 CTGCCACAACCCTCGGTCCGGCTTGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAAAC
1 CTGCCACAACCCTCGGTCCGGCTTGGGCTTAGACATGGAATAAACTCTGTAAGCCTAAGCCAAAC
** * ** * *
34726380 AACAAAATGAGCATGCGGGCGCTTTGCCAACTGGAGAAGCAAAATGTGCAAGTCGGGGACTGGCC
66 AACAAAATGAGCATGCGGGCGCTCAGCCAACCGGAGAAGCAAAATACGCAAGCCGGGGACTAGCC
*
34726445 TGATCCCCCTCTGCGTGCTGTCGGTCCTT
131 CGATCCCCCTCTGCGTGCTGTCGGTCCTT
34726474 CTGCCACAACCCTCGGTCCGG-TTGGGGCTTAGACATGGAATAAACTACT-TAAGCCTAAGCCAA
1 CTGCCACAACCCTCGGTCCGGCTT-GGGCTTAGACATGGAATAAACT-CTGTAAGCCTAAGCCAA
* * * * * * * * * ** * *
34726537 CCCACGAAATGGGCGTGTGGTCTCTCAGTCGGCCGGAGAGGCAGAATACGCAAGCCGGGGA-TCA
64 ACAACAAAATGAGCATGCGGGCGCTCAGCCAACCGGAGAAGCAAAATACGCAAGCCGGGGACT-A
34726601 GCCCGATCCCC
128 GCCCGATCCCC
34726612 TTTGCATGCT
Statistics
Matches: 112, Mismatches: 23, Indels: 6
0.79 0.16 0.04
Matches are distributed among these distances:
158 3 0.03
159 107 0.96
160 2 0.02
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.19
Consensus pattern (159 bp):
CTGCCACAACCCTCGGTCCGGCTTGGGCTTAGACATGGAATAAACTCTGTAAGCCTAAGCCAAAC
AACAAAATGAGCATGCGGGCGCTCAGCCAACCGGAGAAGCAAAATACGCAAGCCGGGGACTAGCC
CGATCCCCCTCTGCGTGCTGTCGGTCCTT
Found at i:34727418 original size:26 final size:26
Alignment explanation
Indices: 34727380--34727432 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34727370 GGCTGAAAAT
34727380 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCTATATG
*
34727406 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCTATATG
34727432 C
1 C
34727433 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTATATG
Found at i:34728283 original size:341 final size:343
Alignment explanation
Indices: 34727564--34728348 Score: 842
Period size: 341 Copynumber: 2.3 Consensus size: 343
34727554 TCGATTCGAT
* * *
34727564 CTTAGACTG-GGAATGAACTCTGTATGTATAAGTCAACCCACGAAACGAGTGTACGGGCACTGAG
1 CTTAGACTGAGG-ATGAACTCTGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCACTGAG
* * * * *
34727628 CCGACCGAAGACGCATATTGCGCAAGCCGTGGATCGACCCAGTCCCCCTCTACGTGCTACCGGTC
65 CCGACCGAAGACGCATAATACGCAAGCCGAGGATCGACCCAGTCCCCCTCTACATGCTACCGATC
* * ** * *
34727693 CCGCTACCACAACCCTTAGTCTGGGTGGGGCTGAGACTTGGAATGAACTCCCTATGCCTAAGCCA
130 CCACTACCACAACCCTCAGTCCAGCTGGGGCTGAGACATGGAATGAACTCCCTATGCCTAAGCCA
* ** * * *
34727758 ACCCATGAAACGAACGTGCGGGCACTCAGCTGACCTGAGAGGCAGAATGAGTAAGTCGGGGATCA
195 ACCCACGAAACGAACGTGCGGGCACTCAGCCAACCAGAGAGGCAGAATGAGCAAGCCGGGGATCA
** * * * * * *
34727823 GCCCGATCCCCCTTTTGTGCTGCCGATCCTGTTGCCGCAACCCTCGGTCCGGTCTGATCTTAGGC
260 GCCCGATCCCCCTTACGTGCTGCCGATCCTGCTGCCACAACCCTCGGTCCGATCCGATATTAGAC
*
34727888 TGGGAATGAACTCCATTTG
325 TGGGAATGAACTCCATATG
* * * *
34727907 CTTAGACT-AGAGATGAACTTTGTATGCAAAAGTCAACCCACGCAACGAGCGTGGGGGCACTGAG
1 CTTAGACTGAG-GATGAACTCTGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCACTGAG
* * * * * * * * ** *
34727971 CTGGCCGGAGAGGCATAATACGTAAGTCGAGGATCGGCCC-GTCCTCCTCTGTATGCTATCGATC
65 CCGACCGAAGACGCATAATACGCAAGCCGAGGATCGACCCAGTCCCCCTCTACATGCTACCGATC
* * * *
34728035 CCATTGCCACAACCCTCAGTCCAGCTGGGGCTTAGACATGGAATGAAGTCCCTATGCCTAAGCCA
130 CCACTACCACAACCCTCAGTCCAGCTGGGGCTGAGACATGGAATGAACTCCCTATGCCTAAGCCA
* ** ** * * * *
34728100 ACCTACGAAACGGGCGTGCGGGCTTTCAGCCAACCAGAGAGGTAGAATGCGCAAGCCGTGGATCG
195 ACCCACGAAACGAACGTGCGGGCACTCAGCCAACCAGAGAGGCAGAATGAGCAAGCCGGGGATCA
* * * * * *
34728165 GCTCGGTCCGCC-TACGTGCTGTCGATCCTGCTGCCACCACCCTCGGTCCGATCCGATATTAGAT
260 GCCCGATCCCCCTTACGTGCTGCCGATCCTGCTGCCACAACCCTCGGTCCGATCCGATATTAGAC
*
34728229 TGGGAATGAACTCCGTATG
325 TGGGAATGAACTCCATATG
** * * *
34728248 CTTAGACTGAGGATGAACTCCATATGCTTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGT
1 CTTAGACTGAGGATGAACTCTGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCACTGAGC
* ** * *
34728313 CGACC-AGAGAGGCAGGATGCGCAAGCCGGGGATCGA
66 CGACCGA-AGACGCATAATACGCAAGCCGAGGATCGA
34728349 ACGGGTGGTA
Statistics
Matches: 355, Mismatches: 83, Indels: 10
0.79 0.19 0.02
Matches are distributed among these distances:
341 136 0.38
342 134 0.38
343 84 0.24
344 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (343 bp):
CTTAGACTGAGGATGAACTCTGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCACTGAGC
CGACCGAAGACGCATAATACGCAAGCCGAGGATCGACCCAGTCCCCCTCTACATGCTACCGATCC
CACTACCACAACCCTCAGTCCAGCTGGGGCTGAGACATGGAATGAACTCCCTATGCCTAAGCCAA
CCCACGAAACGAACGTGCGGGCACTCAGCCAACCAGAGAGGCAGAATGAGCAAGCCGGGGATCAG
CCCGATCCCCCTTACGTGCTGCCGATCCTGCTGCCACAACCCTCGGTCCGATCCGATATTAGACT
GGGAATGAACTCCATATG
Found at i:34728848 original size:159 final size:156
Alignment explanation
Indices: 34728464--34728914 Score: 460
Period size: 159 Copynumber: 2.9 Consensus size: 156
34728454 AACTCCGTAC
* * * * *
34728464 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACAAAATGAGTGTGTGGGCACCCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* * * * *
34728529 CTGGCCGGAGCGGCAGAATGCATAAGCCGGGGATCGACCCGATCCCCCCTGCGTGTTGTCGATCC
66 CCGGCCGAAGAGGCAGAATGCACAAGCCGGGGATCG-CCCGAT-CCCCCTGCGTGCTGTCGATCC
* ** **
34728594 TACTGCTGCAACCCTTGGTCCGATCTAA
129 CACTGCCACAACCCTCAGTCCGATCTAA
* * * * ** * *
34728622 TCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGCGTGCGAACGTTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCA
* * *
34728686 GCCGACCGAAGAGGCATAATGCACAAGCCGGGGATCAGCCC-AGTCCCCCTTTGCGTGCTGTCGG
65 GCCGGCCGAAGAGGCAGAATGCACAAGCCGGGGATC-GCCCGA-TCCCCC--TGCGTGCTGTCGA
* **
34728750 TCCCGCTGCCACAACCCTCAGTCCGA-CTGGG
126 TCCCACTGCCACAACCCTCAGTCCGATCT-AA
* * *
34728781 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* * *
34728846 CCGGTC-AGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGATCCCCCTGCGTGCTGTCGATCC
66 CCGGCCGA-AGAGGCAGAATGCACAAGCCGGGGATC-GCCCGATCCCCCTGCGTGCTGTCGATCC
*
34728910 TACTG
129 CACTG
34728915 TCGTAACCCT
Statistics
Matches: 236, Mismatches: 48, Indels: 19
0.78 0.16 0.06
Matches are distributed among these distances:
157 25 0.11
158 86 0.36
159 123 0.52
160 2 0.01
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.18
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
CCGGCCGAAGAGGCAGAATGCACAAGCCGGGGATCGCCCGATCCCCCTGCGTGCTGTCGATCCCA
CTGCCACAACCCTCAGTCCGATCTAA
Found at i:34728967 original size:25 final size:26
Alignment explanation
Indices: 34728939--34728990 Score: 72
Period size: 25 Copynumber: 2.0 Consensus size: 26
34728929 CTGGTCCGAT
34728939 CTTAGACTGGAG-TGAAC-TCTGTATG
1 CTTAGACTGGAGATGAACTTC-GTATG
*
34728964 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGAGATGAACTTCGTATG
34728990 C
1 C
34728991 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
25 11 0.46
26 11 0.46
27 2 0.08
ACGTcount: A:0.23, C:0.17, G:0.29, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGAGATGAACTTCGTATG
Found at i:34729358 original size:25 final size:26
Alignment explanation
Indices: 34729281--34729358 Score: 124
Period size: 26 Copynumber: 3.0 Consensus size: 26
34729271 CCGGTCTGAT
34729281 CTTAGACTGGGAATAAACTCTGTATG
1 CTTAGACTGGGAATAAACTCTGTATG
34729307 CTTAGACTGGGAATAAACTCTGTATG
1 CTTAGACTGGGAATAAACTCTGTATG
*
34729333 CTTAGACTAGGG-AT-AACTCTGGATG
1 CTTAGACT-GGGAATAAACTCTGTATG
34729358 C
1 C
34729359 CTAAGTCAAC
Statistics
Matches: 50, Mismatches: 1, Indels: 3
0.93 0.02 0.06
Matches are distributed among these distances:
25 11 0.22
26 36 0.72
27 3 0.06
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCTGTATG
Found at i:34729874 original size:26 final size:27
Alignment explanation
Indices: 34729836--34729890 Score: 76
Period size: 26 Copynumber: 2.1 Consensus size: 27
34729826 ATCTGATCTT
34729836 AGACTGGAAATGAACTCCGTATG-CTA
1 AGACTGGAAATGAACTCCGTATGCCTA
** *
34729862 AGACTGGGGATGAAGTCCGTATGCCTA
1 AGACTGGAAATGAACTCCGTATGCCTA
34729889 AG
1 AG
34729891 TCAACCCACG
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.31, C:0.18, G:0.29, T:0.22
Consensus pattern (27 bp):
AGACTGGAAATGAACTCCGTATGCCTA
Found at i:34730851 original size:159 final size:158
Alignment explanation
Indices: 34730393--34731173 Score: 478
Period size: 159 Copynumber: 4.9 Consensus size: 158
34730383 GTACCAGCAC
* * * * * * *
34730393 CCAACCCACGAAATGAGCGTGCGGGCTCTCAGTC-GATCGGAGAGGTAGAATGCGCAAGCCGAGG
1 CCAACCCACGAAACGAGAGTGCGGGCACTGA-ACAGACCGGAGAGGTAGAATGCGCAAGCCGGGG
* * * **
34730457 ATCGACCCGGTCGCCCCC-TGCGTGCTATCGATCTTGCTGCCGCAACCCT-TGGT-TTGATCCGA
65 ATCG-TCCGGTC-CCCCCTTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCT-GTCCAG-TCCGA
* * * *
34730519 TCTTAGATTGGGAATGATA-TCTGTACGCATAAG
126 TGTTAGACTAGGAATGA-ACTCTGTATGCATAAG
* * * * * * * * *
34730552 TCAACCCATGAAACGAGCGTGCGGGCACTGAGCTGACCGAAGAGGCATAATGCGCAAGCCAGGGA
1 CCAACCCACGAAACGAGAGTGCGGGCACTGAACAGACCGGAGAGGTAGAATGCGCAAGCCGGGGA
* * * * * * *
34730617 TCGGT-CGGTCCCTCTTTGCATGCTGTCGATCCTGCTGCCACAACCCTC-GATCCAAT-TGGTGC
66 TC-GTCCGGTCCCCCCTTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCTG-TCCAGTCCGATG-
*
34730679 TTAGAC-ATGGAATGAACTCTGTATGCCTAAG
128 TTAGACTA-GGAATGAACTCTGTATGCATAAG
* * * ** *
34730710 CCAAGCCACGGAATGAGAGTGCGGGTGCTTAACAGACCGGAGAGGTAGAATGCGCAAGCCGGGGA
1 CCAACCCACGAAACGAGAGTGCGGGCACTGAACAGACCGGAGAGGTAGAATGCGCAAGCCGGGGA
**
34730775 TCGTCCTGGTCCCCCCTTGCGTGCTGTCGATCCTGCTATCGCAACCCTCTGTCCAGTCCGATGTT
66 TCGTCC-GGTCCCCCCTTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCTGTCCAGTCCGATGTT
34730840 AGACTAGGAATGAACTCTGTATGCATAAG
130 AGACTAGGAATGAACTCTGTATGCATAAG
* * * * * * * * * * * * *
34730869 TCAACGCACAAAACTAGTGTGCGGGCACTGAGCCGACCGAAAAGGCATAATGCACAAGTCGGGGA
1 CCAACCCACGAAACGAGAGTGCGGGCACTGAACAGACCGGAGAGGTAGAATGCGCAAGCCGGGGA
* * * * * * * * * * * * * **
34730934 TCGGCCCAGG--CCCTCTCTACGTGCTGCCGGTCCCGTTACCACAACCCTCAGTTCGGT-TGGGG
66 TC-GTCC-GGTCCCCCCT-TGCGTGCTGTCGATCCTGCTGCCGCAACCCTCTGTCCAGTCCGATG
* *
34730996 CTTAGAC-AGGGAATGAACT-TCCTATGCCTAAG
128 -TTAGACTA-GGAATGAACTCT-GTATGCATAAG
* * * * * * * *
34731028 CCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGACCGGAGCGGTAGAATGGGCAAGCTGAGGA
1 CCAACCCACGAAACGAGAGTGCGGGCACTGAACAGACCGGAGAGGTAGAATGCGCAAGCCGGGGA
* * * * * * * * *
34731093 TTGGCCCAGTCCCCCC-TGCGTGCTGTCGATCCTACTGTCACAACCCTC-GACCCGGTCCGATCT
66 -TCGTCCGGTCCCCCCTTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCTG-TCCAGTCCGATGT
*
34731156 TAAACTAGGAATGAACTC
129 TAGACTAGGAATGAACTC
34731174 CACATGTTGA
Statistics
Matches: 471, Mismatches: 125, Indels: 52
0.73 0.19 0.08
Matches are distributed among these distances:
157 10 0.02
158 165 0.35
159 280 0.59
160 16 0.03
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (158 bp):
CCAACCCACGAAACGAGAGTGCGGGCACTGAACAGACCGGAGAGGTAGAATGCGCAAGCCGGGGA
TCGTCCGGTCCCCCCTTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCTGTCCAGTCCGATGTTA
GACTAGGAATGAACTCTGTATGCATAAG
Found at i:34731115 original size:317 final size:316
Alignment explanation
Indices: 34730393--34731173 Score: 874
Period size: 317 Copynumber: 2.5 Consensus size: 316
34730383 GTACCAGCAC
* * *
34730393 CCAACCCACGAAATGAGCGTGCGGGCTCTCAGTCGATCGGAGAGGTAGAATGCGCAAGCCGAGGA
1 CCAACCCACGAAATGAGCGTGCGGGCACTCAGCCGACCGGAGAGGTAGAATGCGCAAGCCGAGGA
* * * **
34730458 TCGACCCGGTCGCCCCCTGCGTGCTATCGATCTTGCTGCCGCAACCCT-TGGT-TTGATCCGATC
66 TCGACCCGGTC-CCCCCTGCGTGCTGTCGATCCTGCTGTCGCAACCCTCT-GTCCAG-TCCGATC
* * **
34730521 TTAGATTGGGAATGATA-TCTGTACGCATAAGTCAACCCATGAAACGAGCGTGCGGGCACTGAGC
128 TTAGACTAGGAATGA-ACTCTGTACGCATAAGTCAACCCACAAAACGAGCGTGCGGGCACTGAGC
* * * * * * * *
34730585 TGACCGAAGAGGCATAATGCGCAAGCCAGGGATCGGTCGGTCCCTCTTTGCATGCTGTCGATCCT
192 CGACCGAAAAGGCATAATGCACAAGCCAGGGATCGGCCGGTCCCTCTCTACATGCTGCCGATCCC
* * * *
34730650 GCTGCCACAACCCTCGATCCAATTGGTGCTTAGACATGGAATGAACTCTGTATGCCTAAG
257 GCTACCACAACCCTCGATCCAATTGGGGCTTAGACAGGGAATGAACTCTCTATGCCTAAG
* * * ** * * * *
34730710 CCAAGCCACGGAATGAGAGTGCGGGTGCTTAACAGACCGGAGAGGTAGAATGCGCAAGCCGGGGA
1 CCAACCCACGAAATGAGCGTGCGGGCACTCAGCCGACCGGAGAGGTAGAATGCGCAAGCCGAGGA
* * * *
34730775 TCGTCCTGGTCCCCCCTTGCGTGCTGTCGATCCTGCTATCGCAACCCTCTGTCCAGTCCGATGTT
66 TCGACCCGGTCCCCCC-TGCGTGCTGTCGATCCTGCTGTCGCAACCCTCTGTCCAGTCCGATCTT
* * * *
34730840 AGACTAGGAATGAACTCTGTATGCATAAGTCAACGCACAAAACTAGTGTGCGGGCACTGAGCCGA
130 AGACTAGGAATGAACTCTGTACGCATAAGTCAACCCACAAAACGAGCGTGCGGGCACTGAGCCGA
* * * *
34730905 CCGAAAAGGCATAATGCACAAGTCGGGGATCGGCCCAGG-CCCTCTCTACGTGCTGCCGGTCCCG
195 CCGAAAAGGCATAATGCACAAGCCAGGGATCGG-CC-GGTCCCTCTCTACATGCTGCCGATCCCG
* * **
34730969 TTACCACAACCCTC-AGTTCGGTTGGGGCTTAGACAGGGAATGAACT-TCCTATGCCTAAG
258 CTACCACAACCCTCGA-TCCAATTGGGGCTTAGACAGGGAATGAACTCT-CTATGCCTAAG
* * * *
34731028 CCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGACCGGAGCGGTAGAATGGGCAAGCTGAGGA
1 CCAACCCACGAAATGAGCGTGCGGGCACTCAGCCGACCGGAGAGGTAGAATGCGCAAGCCGAGGA
* * * * * * *
34731093 TTGGCCCAGTCCCCCCTGCGTGCTGTCGATCCTACTGTCACAACCCTC-GACCCGGTCCGATCTT
66 TCGACCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGTCGCAACCCTCTG-TCCAGTCCGATCTT
*
34731157 AAACTAGGAATGAACTC
130 AGACTAGGAATGAACTC
34731174 CACATGTTGA
Statistics
Matches: 383, Mismatches: 72, Indels: 18
0.81 0.15 0.04
Matches are distributed among these distances:
316 7 0.02
317 241 0.63
318 133 0.35
319 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (316 bp):
CCAACCCACGAAATGAGCGTGCGGGCACTCAGCCGACCGGAGAGGTAGAATGCGCAAGCCGAGGA
TCGACCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGTCGCAACCCTCTGTCCAGTCCGATCTTA
GACTAGGAATGAACTCTGTACGCATAAGTCAACCCACAAAACGAGCGTGCGGGCACTGAGCCGAC
CGAAAAGGCATAATGCACAAGCCAGGGATCGGCCGGTCCCTCTCTACATGCTGCCGATCCCGCTA
CCACAACCCTCGATCCAATTGGGGCTTAGACAGGGAATGAACTCTCTATGCCTAAG
Found at i:34732192 original size:159 final size:157
Alignment explanation
Indices: 34731897--34732381 Score: 466
Period size: 159 Copynumber: 3.1 Consensus size: 157
34731887 GCTTAGACAT
* * * *
34731897 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGTTCAGTC-AGCC-AG
1 GGAATGAACTCCGTATGCCTAAG-CAACCCATGAAACGAGCGTGCGGGAGCTCAGTCGA-CCGA-
* * *
34731960 AGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCTCTACGTGCTGTCGATCCTGCTGCC
63 AGAGGCAGAATGCGCAAGCCG-GGATCGACCCGGTCCCCCTCTTCGTGCTGACGATCCTGCTGCC
34732025 GCAACCCTCGATCCGGTCTGGTCTTAAACTG
127 GCAACCCTCGATCCGGTCTGGTCTTAAACTG
* * * * *
34732056 GGAATGAACTCTGTATGCATAAGTCAACCCATGAAACGAGCGTGCGGGAGCTGAGCCGATCGAAG
1 GGAATGAACTCCGTATGCCTAAG-CAACCCATGAAACGAGCGTGCGGGAGCTCAGTCGACCGAAG
* * * * **
34732121 AGGCATAGTGCGCAAGCCAGGGATCGGCCCGGTCCCCCTCTTCGTGCTGACGGTCCTGCTGCTAC
65 AGGCAGAATGCGCAAGCC-GGGATCGACCCGGTCCCCCTCTTCGTGCTGACGATCCTGCTGCCGC
* * *
34732186 AGCCCTC-AGTCCAG-CTAGGGCTTAAACAT-
129 AACCCTCGA-TCCGGTCT-GGTCTTAAAC-TG
* ** * * * * *
34732215 GGAATGAACTCCCTATGCCTAAGCAAATGCATGAAACGGGCGTGCAGGCA-CTCAATCGGCCGGA
1 GGAATGAACTCCGTATGCCTAAGC-AACCCATGAAACGAGCGTGC-GGGAGCTCAGTCGACCGAA
* *
34732279 GAGGCAGAATGCACAAGCCGGGGATCGACCCAGT-CCCCTCTGT-GTGCT-ATCGATCCTGCTGC
64 GAGGCAGAATGCGCAAGCC-GGGATCGACCCGGTCCCCCTCT-TCGTGCTGA-CGATCCTGCTGC
* * * *
34732341 CGCAACCCTCGGTCCGGTTTGATCTTAGACTG
126 CGCAACCCTCGATCCGGTCTGGTCTTAAACTG
34732373 GGAATGAAC
1 GGAATGAAC
34732382 CTTGTATGCT
Statistics
Matches: 262, Mismatches: 51, Indels: 27
0.77 0.15 0.08
Matches are distributed among these distances:
157 2 0.01
158 54 0.21
159 199 0.76
160 7 0.03
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.19
Consensus pattern (157 bp):
GGAATGAACTCCGTATGCCTAAGCAACCCATGAAACGAGCGTGCGGGAGCTCAGTCGACCGAAGA
GGCAGAATGCGCAAGCCGGGATCGACCCGGTCCCCCTCTTCGTGCTGACGATCCTGCTGCCGCAA
CCCTCGATCCGGTCTGGTCTTAAACTG
Found at i:34732752 original size:26 final size:26
Alignment explanation
Indices: 34732723--34732774 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
34732713 CCAATCCGAT
34732723 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
34732749 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
34732775 TCTAAGTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:34733482 original size:26 final size:26
Alignment explanation
Indices: 34733444--34733496 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
34733434 GGCTCAAAAT
**
34733444 CTTAGACTGGGAATGAAATCCATATG
1 CTTAGACAAGGAATGAAATCCATATG
* *
34733470 CTTAGACAAGGAATGAACTCCGTATG
1 CTTAGACAAGGAATGAAATCCATATG
34733496 C
1 C
34733497 CTAAGCTAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.34, C:0.19, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACAAGGAATGAAATCCATATG
Found at i:34733800 original size:158 final size:158
Alignment explanation
Indices: 34733469--34733971 Score: 441
Period size: 158 Copynumber: 3.2 Consensus size: 158
34733459 AAATCCATAT
* *
34733469 GCTTAGACAAGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGAACGTGCGGACGCTCAG
1 GCTTAGACAAGGAATGAACTCCGTATGCCTAAGC-AACCCACGAAACGAACGAGCGGACACTCAG
* * * * *
34733534 TCGATCGGAGAGGCAGAATGCGTAAGCCGGGGATCGACCCGATTCCCCCCTGCGTGCTGTCGATC
65 CCGACCGAAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATTCCCCCCTGCGTGCTGTCGATC
*
34733599 CTGCTACCATAACCCTCTGTCCGGTCTGA
130 CTGCTACCACAACCCTCTGTCCGGTCTGA
* * * * *
34733628 TCTTAGACAAGGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGCGAGCAGG-CACTGA
1 GCTTAGACAAGGAATGAACTCCGTATGCCTAAG-CAACCCACGAAACGAACGAGC-GGACACTCA
* *
34733692 GCCGACCGAAGAGGCATAATG-GCAAGCCAGGGATCGACCCGA-TCCCCCTCTGCGTGCTG-CTA
64 GCCGACCGAAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATTCCCCC-CTGCGTGCTGTCGA
* * * *
34733754 TTCCTGCTGCCACAAGCCT-TGGTCTGGT-TGGG
128 -TCCTGCTACCACAACCCTCT-GTCCGGTCT-GA
* * * * * * * * *
34733786 GCTTAGCCATGGAATGAACTCCCTATGCCTAAGCCAACCCAAGAAACGGATG-TCTGGGCGCTCA
1 GCTTAGACAAGGAATGAACTCCGTATGCCTAAG-CAACCCACGAAACGAACGAGC-GGACACTCA
** * * * * *
34733850 GCCGGTC-AGAGAGGCAGAATGCGCAAGTCGGGGATCGGCTCG-GTCCCCCCTGCGTGCTGTCGA
64 GCCGACCGA-AGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATTCCCCCCTGCGTGCTGTCGA
* * * *
34733913 TCCTGCTGCCGCAACCCTC-GCTTCGGTCCGA
128 TCCTGCTACCACAACCCTCTG-TCCGGTCTGA
* * ** *
34733944 TCTTAAACTGGGAATGAACTCCATATGC
1 GCTTAGACAAGGAATGAACTCCGTATGC
34733972 TTAGACTGGG
Statistics
Matches: 276, Mismatches: 54, Indels: 29
0.77 0.15 0.08
Matches are distributed among these distances:
157 15 0.05
158 165 0.60
159 93 0.34
160 3 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.19
Consensus pattern (158 bp):
GCTTAGACAAGGAATGAACTCCGTATGCCTAAGCAACCCACGAAACGAACGAGCGGACACTCAGC
CGACCGAAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATTCCCCCCTGCGTGCTGTCGATCC
TGCTACCACAACCCTCTGTCCGGTCTGA
Found at i:34733981 original size:26 final size:26
Alignment explanation
Indices: 34733945--34733997 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34733935 TCGGTCCGAT
34733945 CTTAAACTGGGAATGAACTCCATATG
1 CTTAAACTGGGAATGAACTCCATATG
* *
34733971 CTTAGACTGGGGATGAACTCCATATG
1 CTTAAACTGGGAATGAACTCCATATG
34733997 C
1 C
34733998 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCATATG
Found at i:34734052 original size:13 final size:13
Alignment explanation
Indices: 34734034--34734061 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
34734024 CGGGCGCTCA
34734034 GCCGGTCGGAGAG
1 GCCGGTCGGAGAG
34734047 GCCGGTCGGAGAG
1 GCCGGTCGGAGAG
34734060 GC
1 GC
34734062 ATAATGCACA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.14, C:0.25, G:0.54, T:0.07
Consensus pattern (13 bp):
GCCGGTCGGAGAG
Found at i:34734353 original size:26 final size:26
Alignment explanation
Indices: 34734312--34734364 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
34734302 CCGGTCCGAT
34734312 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
34734338 CTTAGACTAGGG-ATGAACTCCATATG
1 CTTAGACT-GGGAATGAACTCCATATG
34734364 C
1 C
34734365 CCAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:34735878 original size:26 final size:26
Alignment explanation
Indices: 34735849--34735901 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34735839 CCGGTCCGAT
34735849 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
34735875 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
34735901 C
1 C
34735902 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34736208 original size:159 final size:159
Alignment explanation
Indices: 34735999--34736301 Score: 403
Period size: 159 Copynumber: 1.9 Consensus size: 159
34735989 CGTGCTGTCA
* * * *
34735999 GTCCTGCTATCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCATAAG
1 GTCCTGCTACCACAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCCTATGCATAAG
* * * * **
34736064 ACAACCCATGAAATGAGTGTGCGGGCACTGAGCCGGCCGAAGAGGCATAATGCGCAAGTTGGGGA
66 ACAACCCATGAAATGAGCGTGCGGGCACTCAACCGGCCGAAGAGGCAGAATGCGCAAGCCGGGGA
34736129 TCGGCCCCGTCCCCCTAAGCGTCATGCCG
131 TCGGCCCCGTCCCCCTAAGCGTCATGCCG
** *
34736158 GTCCTGCTACCACAACCCTCGATCCGACTGGGA-CTTAGACAT-GGAATGAACTCCCTATGCCTA
1 GTCCTGCTACCACAACCCTCGATCCGA-TCCGATCTTAGAC-TGGGAATGAACTCCCTATGCATA
* * * * *
34736221 AGCCAACCCATGAAATGGGCGTGCGGGCACTCAACCGGTCGGAGAGGCAGAATGCGTAAGCCGGG
64 AGACAACCCATGAAATGAGCGTGCGGGCACTCAACCGGCCGAAGAGGCAGAATGCGCAAGCCGGG
*
34736286 GATCGGCCCGGTCCCC
129 GATCGGCCCCGTCCCC
34736302 TCGCGTACTG
Statistics
Matches: 123, Mismatches: 19, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
159 119 0.97
160 4 0.03
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.17
Consensus pattern (159 bp):
GTCCTGCTACCACAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCCTATGCATAAG
ACAACCCATGAAATGAGCGTGCGGGCACTCAACCGGCCGAAGAGGCAGAATGCGCAAGCCGGGGA
TCGGCCCCGTCCCCCTAAGCGTCATGCCG
Found at i:34736384 original size:26 final size:26
Alignment explanation
Indices: 34736348--34736400 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
34736338 CTGGTCCAAT
*
34736348 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
34736374 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
34736400 C
1 C
34736401 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34737431 original size:159 final size:156
Alignment explanation
Indices: 34737097--34737540 Score: 371
Period size: 159 Copynumber: 2.8 Consensus size: 156
34737087 ACTCCGTATG
* * *
34737097 CTTAGACATGGAATGAACTCCATATGCCTAAGCAAACCCATGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCATATGCATAAGCAAACCCAAGAAACGAGCGTACGGGCGCTCAGC
* * *
34737162 CAACCGAAGAGGTAGATGTGCAAGCCGAGGATCAACCCGGCCCCCCTACGTGCTATCGATCCTAC
66 CAACCGAAGAGGTAGATGCGCAAGCCGAGGATCAACCCGGCCCCCCTACGTGCTACCGATCCGAC
* * *
34737227 TGCCATAACCCTCGGTCCGGTCTGAT
131 TGCCACAACCCTCAGTCCGGACTGAT
* ** * *
34737253 CTTAGAC-TGGGAATGAACTCCGTATGCATAAGTGAACCCAAGAAATGAGCGTACGGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCATATGCATAAGCAAACCCAAGAAACGAGCGTACGGGCGCTCAG
* * * * * * * *
34737317 CCGACCGAAGAGGCATA-ATGCGCAAGCCGGGGATCGACCCTGTCCCCCTGTGCGTGCTGCCGGT
65 CCAACCGAAGAGG--TAGATGCGCAAGCCGAGGATCAACCC-GGCCCCC-CTACGTGCTACCGAT
*
34737381 CTCGA-TGCCACAACCCTCAGT-CTGACTGGGA-
126 C-CGACTGCCACAACCCTCAGTCCGGACT--GAT
* * * * * * * * * *
34737412 CTTAGACATAGAATGAACTCCCTACGCCA-AAGGAAACTCACGAAACGGGTGTGCGGGCACTCAG
1 CTTAGACATGGAATGAACTCCATATG-CATAAGCAAACCCAAGAAACGAGCGTACGGGCGCTCAG
* * * * ** *
34737476 CCAACCGGATAGGCAGAATGCGTAAGCCG-GGCATCGGCCCGGTCCCCCCTGCGTGCTACCGATC
65 CCAACCGAAGAGGTAG-ATGCGCAAGCCGAGG-ATCAACCCGG-CCCCCCTACGTGCTACCGATC
34737540 C
127 C
34737541 TGCTTTTGCA
Statistics
Matches: 228, Mismatches: 46, Indels: 27
0.76 0.15 0.09
Matches are distributed among these distances:
155 1 0.00
156 66 0.29
157 22 0.10
158 28 0.12
159 104 0.46
160 7 0.03
ACGTcount: A:0.25, C:0.31, G:0.27, T:0.17
Consensus pattern (156 bp):
CTTAGACATGGAATGAACTCCATATGCATAAGCAAACCCAAGAAACGAGCGTACGGGCGCTCAGC
CAACCGAAGAGGTAGATGCGCAAGCCGAGGATCAACCCGGCCCCCCTACGTGCTACCGATCCGAC
TGCCACAACCCTCAGTCCGGACTGAT
Found at i:34739721 original size:26 final size:26
Alignment explanation
Indices: 34739692--34739742 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
34739682 GGCTCAAAAT
*
34739692 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
34739718 CTTAGACATGGAATGAACTCCGTAT
1 CTTAGACATGGAATGAACTCCGTAT
34739743 ACCTAAGCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:34740088 original size:159 final size:158
Alignment explanation
Indices: 34739717--34740178 Score: 414
Period size: 159 Copynumber: 2.9 Consensus size: 158
34739707 AACTCTGTAT
* * * *
34739717 GCTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCCATGAAACGAGCATGCTGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAA
* * * * * *
34739782 TCGACCGGAGAGGCAGAATGCACAAGCCAGAGACCAACCCGGTCCCCCCTGTGTGCTGTTGATCT
66 CCGACCGAAGAGGCAGAATGCACAAGCCAGAGACCAACCCAGTCCCCCCTGCGTGCTGTCGATCC
* ** * *
34739847 TGCTGCTGCAACCCTCTATTCGATCTGA
131 CGCTGCCACAACCCTCTATCCGAGCTGA
* * * * ** *
34739875 TCTTAGAC-TGGCAATGAACTCCGTATGCATAAGTCAACCCACGAAATAAGCGTGCGGGCACTGA
1 GCTTAGACATGG-AATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCA
* * * * * * * *
34739939 GCCGGCCGAAGAGGCATAATGCGCAAGCCAGGGATCGACCCAGTCCCCCTCTGCGTGCTGTCGGT
65 ACCGACCGAAGAGGCAGAATGCACAAGCCAGAGACCAACCCAGTCCCCC-CTGCGTGCTGTCGAT
* *
34740004 CCCGCTGCCACAACCCT-TGGTCCG-GCTGGG
129 CCCGCTGCCACAACCCTCT-ATCCGAGCT-GA
* * *
34740034 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGATCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAA
* * * * ** * * *
34740099 CCGGA-TGGAGAGGCAGAATGCATAAGCC-GAGGATC-GGCTAATTCCCCCTGCGTGCTGTCGAT
66 CC-GACCGAAGAGGCAGAATGCACAAGCCAGA-GACCAACCCAGTCCCCCCTGCGTGCTGTCGAT
* *
34740161 CCTGCTGCCGCAACCCTC
129 CCCGCTGCCACAACCCTC
34740179 GATTCGGTCT
Statistics
Matches: 238, Mismatches: 58, Indels: 16
0.76 0.19 0.05
Matches are distributed among these distances:
157 32 0.13
158 99 0.42
159 103 0.43
160 4 0.02
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAA
CCGACCGAAGAGGCAGAATGCACAAGCCAGAGACCAACCCAGTCCCCCCTGCGTGCTGTCGATCC
CGCTGCCACAACCCTCTATCCGAGCTGA
Found at i:34740954 original size:26 final size:26
Alignment explanation
Indices: 34740914--34740966 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34740904 GCTCAAAAAT
34740914 CTTAGACTGGTAATGAACTCCGCATG
1 CTTAGACTGGTAATGAACTCCGCATG
*
34740940 CTTAGACATGG-AATGAACTCCGTATG
1 CTTAGAC-TGGTAATGAACTCCGCATG
34740966 C
1 C
34740967 CGAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGTAATGAACTCCGCATG
Found at i:34741143 original size:25 final size:26
Alignment explanation
Indices: 34741097--34741148 Score: 97
Period size: 25 Copynumber: 2.0 Consensus size: 26
34741087 CTGGTTTGAT
34741097 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
34741123 CTTAGACTAGG-ATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
34741148 C
1 C
34741149 CCAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 15 0.58
26 11 0.42
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:34742175 original size:26 final size:26
Alignment explanation
Indices: 34742146--34742198 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34742136 CCGGTCCAAT
34742146 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
34742172 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
34742198 C
1 C
34742199 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:34745296 original size:158 final size:153
Alignment explanation
Indices: 34744847--34745297 Score: 463
Period size: 157 Copynumber: 2.8 Consensus size: 153
34744837 CCTACACGCT
* * *
34744847 CATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAAGG
1 CATTTCGTGGGTTGACTTAGGCATAC-GAGTTCATT-CCAGTCTAAGATCGAACC-GA-CGAGGG
* * *
34744912 TTACGGTAGCAGGATCGATAGTACGCAGGGGGGATCGGGCCGATCCTCGGCTTGCGCATTCT-CC
62 TTACGGCAGCAGGATCGATAGCACGCAGGGGGGA-CGGGCCGATCCCCGGCTTGCGCATTCTGCC
** * *
34744976 TCTCCGATCGGCTGAGCACCTGTACGCC
126 TCTCCGATCGGCCCAGCACCTGCACACC
* * * * ** *
34745004 CGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGAACTGAGGG
1 CATTTCGTGGGTTGACTTAGGCATA-CGAGTTCATTCCA-GTCTAAGATCGAACCG-AC-GAGGG
** ** * * ** * ** *
34745069 TTGTGGCAGTGGGATCGACAGCACGTACAGAGGGTTCGGGCCGATCCCCAGCTTGCGCATTAAGA
62 TTACGGCAGCAGGATCGATAGCACG--CAGGGGGGACGGGCCGATCCCCGGCTTGCGCATTCTGC
*
34745134 CTCTCCGGTCGGCCCAGCACCTGCACACC
125 CTCTCCGATCGGCCCAGCACCTGCACACC
* *
34745163 CATTTCGTGGGTTGACTAATGCATACGAGTTCATTCCAGTCTAAGATCAGAACCAGACGAGGGGT
1 CATTTCGTGGGTTGACTTAGGCATACGAGTTCATTCCAGTCTAAGATC-GAACC-GACGA-GGGT
34745228 TACGGCAGCAGGATCGATAGGCACGCAGGGGGGACGGGCCGATCCCCGGGCTTGCGCATTCTGCC
63 TACGGCAGCAGGATCGATA-GCACGCAGGGGGGACGGGCCGATCCCC-GGCTTGCGCATTCTGCC
34745293 TCTCC
126 TCTCC
34745298 AGCCAATTTA
Statistics
Matches: 231, Mismatches: 51, Indels: 23
0.76 0.17 0.08
Matches are distributed among these distances:
156 5 0.02
157 93 0.40
158 77 0.33
159 56 0.24
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (153 bp):
CATTTCGTGGGTTGACTTAGGCATACGAGTTCATTCCAGTCTAAGATCGAACCGACGAGGGTTAC
GGCAGCAGGATCGATAGCACGCAGGGGGGACGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCC
GATCGGCCCAGCACCTGCACACC
Found at i:34746063 original size:25 final size:25
Alignment explanation
Indices: 34746035--34746085 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
34746025 GTTGACTTAG
*
34746035 GCATGCAGAGTTCATCCCAGTCTAA
1 GCATGCAGAGTTCATCCCAATCTAA
*
34746060 GCATGCAGAGTTCATTCCAATCTAA
1 GCATGCAGAGTTCATCCCAATCTAA
34746085 G
1 G
34746086 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.25
Consensus pattern (25 bp):
GCATGCAGAGTTCATCCCAATCTAA
Found at i:34746418 original size:26 final size:26
Alignment explanation
Indices: 34746382--34746434 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
34746372 TGGGTTGACT
34746382 TAAGCATACAGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTCATTCCCAGTC
*
34746408 TAAGCATACAGAGTTCATTCCTAGTC
1 TAAGCATACAGAGTTCATTCCCAGTC
34746434 T
1 T
34746435 GAGATAGGAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.30
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATTCCCAGTC
Found at i:34748962 original size:26 final size:26
Alignment explanation
Indices: 34748933--34748986 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
34748923 TCCGGTCCGA
*
34748933 GCTTAGAC-TAAGAATGAATTCCGTAT
1 GCTTAGACAT-AGAATGAACTCCGTAT
*
34748959 GCTTAGACATGGAATGAACTCCGTAT
1 GCTTAGACATAGAATGAACTCCGTAT
34748985 GC
1 GC
34748987 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (26 bp):
GCTTAGACATAGAATGAACTCCGTAT
Found at i:34749429 original size:158 final size:158
Alignment explanation
Indices: 34749065--34749429 Score: 353
Period size: 159 Copynumber: 2.3 Consensus size: 158
34749055 CTTGCTACCG
* * *
34749065 CAACCCTCGGT-TCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
1 CAACCCTCGGTCT-GGTCTGATCTTAGACT-GGAATGAACTCCATATGCCTAAGCCAACCCACAA
* ** * * ** * * * *
34749129 AATGAGCGTGTGGGCGTTGAGCGGACCGGAAAGGCATAATGCGCAAGTCGGGGATCTACTCGGTC
64 AATGAGCGTGCGGGCGTCAACCGGACCGGAAAGGCAGAATGAACAAGCCGAGGATCGACCCGGTC
* * * *
34749194 CCCCTCTGTATGCTGTCGGTCCCGCTGCCA
129 CCCCTCTGCATGCTATCGATCCCACTGCCA
* * * ** *
34749224 CAACCCTCGATC-CGACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAA
1 CAACCCTCGGTCTGGTCT-GATCTTAGAC-TGGAATGAACTCCATATGCCTAAGCCAACCCACAA
* * * *
34749288 AATGAGCGTGCGGATGC-TCAACCGG-TCGGAGAGGTAGAATGAACAAGCCGAGGTTCGACCCGG
64 AATGAGCGTGCGG--GCGTCAACCGGACCGGAAAGGCAGAATGAACAAGCCGAGGATCGACCCGG
*
34749351 TCCCCCT-TGCATGCTATCGATCCTACTGCCA
127 TCCCCCTCTGCATGCTATCGATCCCACTGCCA
* *
34749382 TAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAAATCCATATGC
1 CAACCCTCGGTCTGGTCTGATCTTAGACT-GGAATGAACTCCATATGC
34749430 TTAGACTAGG
Statistics
Matches: 163, Mismatches: 36, Indels: 15
0.76 0.17 0.07
Matches are distributed among these distances:
157 1 0.01
158 56 0.34
159 98 0.60
160 6 0.04
161 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (158 bp):
CAACCCTCGGTCTGGTCTGATCTTAGACTGGAATGAACTCCATATGCCTAAGCCAACCCACAAAA
TGAGCGTGCGGGCGTCAACCGGACCGGAAAGGCAGAATGAACAAGCCGAGGATCGACCCGGTCCC
CCTCTGCATGCTATCGATCCCACTGCCA
Found at i:34749444 original size:26 final size:26
Alignment explanation
Indices: 34749403--34749455 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
34749393 CTGGTCTGAT
34749403 CTTAGACTGGGAATGAAATCCATATG
1 CTTAGACTGGGAATGAAATCCATATG
* *
34749429 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAAATCCATATG
34749455 C
1 C
34749456 CTAAGTCAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCATATG
Found at i:34750078 original size:26 final size:26
Alignment explanation
Indices: 34750040--34750092 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34750030 CTGATCTGAT
34750040 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
34750066 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
34750092 C
1 C
34750093 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:34751901 original size:314 final size:316
Alignment explanation
Indices: 34751145--34751960 Score: 1093
Period size: 316 Copynumber: 2.6 Consensus size: 316
34751135 AACTTCGTAT
* * **
34751145 GCTTAGACATGGAATGAACTCCGC-ATGCTTAAGCCAACCCATGAAACAAGCGTGCGGGCGCTT-
1 GCTTAGACATGGAATGAACTCC-CTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCG-TTC
* * * ** * *
34751208 AACCGGCCGGAGAGGCAGAATGCACAAGTCAGGGATCAACCCGGTCCCCCCTACGTGCTGTCAAT
64 AACCGACCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGATCCCCCCTACGTGCTGTCGAT
* * * *
34751273 CCTGCTACCGCAACCCTTGGTTCGGTCCAATCTTAGACTGGGAATGAACTCCATATGCATAAGTC
129 CCTGCTGCCGCAACCCTTGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTC
** * * * ** **
34751338 AACCCACGAAACGAGCGTGTGGGTGCTGAGCTGATCGAAGAGGTATAATGGGCAAGTTAGGATCG
194 AACCCACGAAACGAGCGTACGGGCGCTGAGCCGATCGAAGAGGCATAATACGCAAGCCAGGATCG
*
34751403 GCCCAGTCCCCCTCAGCGTGATATCGGTCCCGCTACCACAACCCTTGGTCCGACAGGG
259 GCCCAGTCCCCCTCAGCGTGATATCGGTCCCGCTACCACAACCCTCGGTCCGACAGGG
* * * * * *
34751461 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCATACGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGTTCAA
* * *
34751526 CCGACCGCAGAGGCAGAATGCACAAGCTGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCC
66 CCGACCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGATCCCCCCTACGTGCTGTCGATCC
* *
34751591 TGCTGCCGCAACCCTTGGTCCAGTCCGATCTTAGACTGGGAATGAATTCCGTATGCATAAGTCAA
131 TGCTGCCGCAACCCTTGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAA
* *
34751656 CCCACGAAACGAGCGTACGGGCGCTGAGCCGGTCGAAGAGGCATAATACGCAAGCCGGGATCGGC
196 CCCACGAAACGAGCGTACGGGCGCTGAGCCGATCGAAGAGGCATAATACGCAAGCCAGGATCGGC
* * * * * * *
34751721 TCAGT-CCCCTCTGCGT-ATTGTTGGTCCCG-TGCCACAACCCTCGGTTCGACTGGG
261 CCAGTCCCCCTCAGCGTGA-TATCGGTCCCGCTACCACAACCCTCGGTCCGACAGGG
*
34751775 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCTACGAAACGGGCGTGCGGGCGTTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGTTCAA
* **
34751840 CCGACCGGAGAGGTAGAATGCGTAAGCCGGGGATCGGCCCGATCCCCCCTACGTGCTGTCGATCC
66 CCGACCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGATCCCCCCTACGTGCTGTCGATCC
* * * *
34751905 TGCTGCCACAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
131 TGCTGCCGCAACCCTTGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
34751961 TTAGACTGGG
Statistics
Matches: 433, Mismatches: 64, Indels: 8
0.86 0.13 0.02
Matches are distributed among these distances:
314 189 0.44
315 21 0.05
316 223 0.52
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (316 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGTTCAA
CCGACCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGATCCCCCCTACGTGCTGTCGATCC
TGCTGCCGCAACCCTTGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAA
CCCACGAAACGAGCGTACGGGCGCTGAGCCGATCGAAGAGGCATAATACGCAAGCCAGGATCGGC
CCAGTCCCCCTCAGCGTGATATCGGTCCCGCTACCACAACCCTCGGTCCGACAGGG
Found at i:34751960 original size:158 final size:157
Alignment explanation
Indices: 34751146--34751960 Score: 676
Period size: 158 Copynumber: 5.2 Consensus size: 157
34751136 ACTTCGTATG
* * * * * *
34751146 CTTAGACATGGAATGAACTCCGCATGCTTAAGCCAACCCATGAAACAAGCGTGCGGGCGCTTAAC
1 CTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * ** * *
34751211 CGGCCGGAGAGGCAGAATGCACAAGTCAGGGATCAACCCGGTCCCCCCTACGTGCTGTCAATCCT
66 CGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTACGTGCTGTCGATCCT
* * * *
34751276 GCTACCGCAACCCTTGGTTCGGTCCAAT
131 GCTGCCACAACCCTTGG-TCCGTCCGAT
* * * * *
34751304 CTTAGAC-TGGGAATGAACTCCATATGCATAAGTCAACCCACGAAACGAGCGTGTGGGTGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * *** * * *
34751368 CTGATCGAAGAGGTATAATGGGCAAG-TTAGGATCGGCCC-AGT-CCCCCTCAGCGTGATATCGG
65 CCGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGA-TCCCCCCT-A-CGTGCTGTCGA
* * * * **
34751430 TCCCGCTACCACAACCCTTGGTCCGACAGGGG
127 TCCTGCTGCCACAACCCTTGGTCCGTC-CGAT
* * * * * * *
34751462 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCATACGGGTGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * *
34751527 CGACCGCAGAGGCAGAATGCACAAGCTGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCCT
66 CGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTACGTGCTGTCGATCCT
*
34751592 GCTGCCGCAACCCTTGGTCCAGTCCGAT
131 GCTGCCACAACCCTTGGTCC-GTCCGAT
* * * *
34751620 CTTAGAC-TGGGAATGAATTCCGTATGCATAAGTCAACCCACGAAACGAGCGTACGGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
** * * * * * ** * *
34751684 CCGGTCGAAGAGGCATAATACGCAAGCC-GGGATCGGCTC-AGTCCCCTCTGCGTATTGTTGGTC
65 CCGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGA-TCCCCCCTACGTGCTGTCGATC
* * * * * **
34751747 CCG-TGCCACAACCCTCGGTTCGACTGGGG
129 CTGCTGCCACAACCCTTGGTCCGTC-CGAT
* * * * * *
34751776 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCTACGAAACGGGCGTGCGGGCGTTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * *
34751841 CGACCGGAGAGGTAGAATGCGTAAGCCGGGGATCGGCCCGATCCCCCCTACGTGCTGTCGATCCT
66 CGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTACGTGCTGTCGATCCT
* * *
34751906 GCTGCCACAACCCTCGATCCGGTCTGAT
131 GCTGCCACAACCCTTGGTCC-GTCCGAT
34751934 CTTAGAC-TGGGAATGAACTCCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
34751961 TTAGACTGGG
Statistics
Matches: 511, Mismatches: 127, Indels: 38
0.76 0.19 0.06
Matches are distributed among these distances:
155 2 0.00
156 96 0.19
157 75 0.15
158 314 0.61
159 17 0.03
160 7 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTACGTGCTGTCGATCCT
GCTGCCACAACCCTTGGTCCGTCCGAT
Found at i:34751963 original size:26 final size:26
Alignment explanation
Indices: 34751934--34751986 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
34751924 CCGGTCTGAT
34751934 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
34751960 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
34751986 C
1 C
34751987 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34753208 original size:26 final size:26
Alignment explanation
Indices: 34753170--34753222 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34753160 GGCTGAAAAT
34753170 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCTATATG
*
34753196 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCTATATG
34753222 C
1 C
34753223 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTATATG
Found at i:34754537 original size:159 final size:157
Alignment explanation
Indices: 34754337--34754639 Score: 355
Period size: 159 Copynumber: 1.9 Consensus size: 157
34754327 TCCTACTACT
* *
34754337 ACAACCCTCAGTCCGATCTAATCTTAGACTGGGAATGAACTCCATATG-CATAAGTCAACCCATC
1 ACAACCCTCAGTCCGATCTAAGCTTAGACTGGGAATGAACTCCATATGCCA-AAGCCAACCCA-C
* *
34754401 -AAATGAGCGTACGGATGCT-GAGCCGACCAAAGAGGCACAATGCACAAGCCGGGGATCAGCCCA
64 GAAACGAGCGTACGGATGCTCG-GCCGACCAAAGAGGCACAATGCACAAGCCGAGGATCAGCCCA
*
34754464 GTCCCCCTTTGCGTGCTGTCGTTCCCGCTGCC
128 ATCCCCC--TGCGTGCTGTCGTTCCCGCTGCC
* *
34754496 ACAACCCTCAGTCCGA-CTAGGGCTTAGACAT-GGAATGAACTCCCTATGCCAAAGCCAACCCAC
1 ACAACCCTCAGTCCGATCTA-AGCTTAGAC-TGGGAATGAACTCCATATGCCAAAGCCAACCCAC
* * * * ** * * * *
34754559 GAAACGGGCGTGCGGGTGCTCGGTCGGTCAGAGAGGCAGAATGCGCAAGTCGAGGATCAGCCCAA
64 GAAACGAGCGTACGGATGCTCGGCCGACCAAAGAGGCACAATGCACAAGCCGAGGATCAGCCCAA
34754624 TCCCCCTGCGTGCTGT
129 TCCCCCTGCGTGCTGT
34754640 TAATCCTGCT
Statistics
Matches: 122, Mismatches: 17, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
157 10 0.08
158 4 0.03
159 104 0.85
160 4 0.03
ACGTcount: A:0.26, C:0.31, G:0.25, T:0.18
Consensus pattern (157 bp):
ACAACCCTCAGTCCGATCTAAGCTTAGACTGGGAATGAACTCCATATGCCAAAGCCAACCCACGA
AACGAGCGTACGGATGCTCGGCCGACCAAAGAGGCACAATGCACAAGCCGAGGATCAGCCCAATC
CCCCTGCGTGCTGTCGTTCCCGCTGCC
Found at i:34754703 original size:25 final size:26
Alignment explanation
Indices: 34754675--34754726 Score: 72
Period size: 25 Copynumber: 2.0 Consensus size: 26
34754665 CTGGTTCGAT
34754675 CTTAGACTGGAG-TGAAC-TCTGTATG
1 CTTAGACTGGAGATGAACTTC-GTATG
*
34754700 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGAGATGAACTTCGTATG
34754726 C
1 C
34754727 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
25 11 0.46
26 11 0.46
27 2 0.08
ACGTcount: A:0.23, C:0.17, G:0.29, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGAGATGAACTTCGTATG
Found at i:34755086 original size:28 final size:26
Alignment explanation
Indices: 34755017--34755096 Score: 99
Period size: 26 Copynumber: 3.0 Consensus size: 26
34755007 CGGGTCTGAT
*
34755017 CTTAGACTAGGAATAAACTCTGTATG
1 CTTAGACTGGGAATAAACTCTGTATG
*
34755043 CGTAGACTGGGAATAAACTCTGTATG
1 CTTAGACTGGGAATAAACTCTGTATG
* *
34755069 CTTTTAGACTGGGGAT-AACTCTGGATG
1 C--TTAGACTGGGAATAAACTCTGTATG
34755096 C
1 C
34755097 CTAAGTCAAC
Statistics
Matches: 47, Mismatches: 5, Indels: 3
0.85 0.09 0.05
Matches are distributed among these distances:
26 25 0.53
27 11 0.23
28 11 0.23
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCTGTATG
Found at i:34755624 original size:26 final size:26
Alignment explanation
Indices: 34755583--34755632 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
34755573 CTGATCTGAT
34755583 CTTAGACTGGAAATGAACTCCGTAAG
1 CTTAGACTGGAAATGAACTCCGTAAG
** *
34755609 CTTAGACTGGGGATGAAGTCCGTA
1 CTTAGACTGGAAATGAACTCCGTA
34755633 TGCCTAAGTC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.30, C:0.18, G:0.28, T:0.24
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTAAG
Found at i:34756642 original size:159 final size:156
Alignment explanation
Indices: 34756144--34756924 Score: 560
Period size: 159 Copynumber: 4.9 Consensus size: 156
34756134 GTACCAGCAC
* * * * * *
34756144 CCAACCCACGAAATGAGCGTGCGGGCTCTCAGTCGATCGGAGAGGCAGAATGCGCAAGCCGAGGA
1 CCAACCCACAAAATGAGCGTGCGGGCACTGAGCCGA-CCGAGAGGCAGAATGCGCAAGCCGGGGA
* * * ** * *
34756209 TCGACCCGGTCGCCCCCTGCGTGCTGTCGATCTTGCTGCCGCAACCCT-TGGT-TTGATCTGATC
65 TCGTCCCGGTC-CCCCCTGCGTGCTGTCGATCCTGCTGCCACAACCCTCT-GTCCAG-TCCGATG
*
34756272 TTAGATTGGGAATGATA-TCTGTATGCATAAG
127 TTAGACT-GGAATGA-ACTCTGTATGCATAAG
* ** * * * *
34756303 TCAACCCATGAAATGAGCGTGCAGGCACTGAGCTGACCGAAGAGGCATAATGCGCAAGCCAGGGA
1 CCAACCCACAAAATGAGCGTGCGGGCACTGAGCCGACCG-AGAGGCAGAATGCGCAAGCCGGGGA
* * * * * *
34756368 TCGAT--CGGTCCCCCTTTGCGTGCTGTCGGTCCCGCTGCCACAACCCTCGGTCCAG-CTGGTGC
65 TCG-TCCCGGTCCCCC-CTGCGTGCTGTCGATCCTGCTGCCACAACCCTCTGTCCAGTCCGATG-
*
34756430 TTAGACATGGAATGAACTCCGTATGGC-TAAG
127 TTAGAC-TGGAATGAACTCTGTAT-GCATAAG
* ** * ** * * * * *
34756461 CCAAGCCACGGAATGAGAGTGCGGGTGCTTAACCGGCCAGAGAGGTAGAATGCACAAGCCGGGGA
1 CCAACCCACAAAATGAGCGTGCGGGCACTGAGCCGACC-GAGAGGCAGAATGCGCAAGCCGGGGA
* ** *
34756526 TCGTCCTGGTCACCCCCTGCGTGCTGTCGATCCTGCTATCGCAACCCTCTGTCCAGTCCGATGTT
65 TCGTCCCGGTC-CCCCCTGCGTGCTGTCGATCCTGCTGCCACAACCCTCTGTCCAGTCCGATGTT
34756591 AGACTGGGAATGAACTCTGTATGCATAAG
129 AGACT-GGAATGAACTCTGTATGCATAAG
* * * * * * *
34756620 TCAACGCACAAAACT-AGCGTGCGGGCACTGAGTCGGCCGAAAAGGCATAATGCGCAAGTCGGGG
1 CCAACCCACAAAA-TGAGCGTGCGGGCACTGAGCCGACCG-AGAGGCAGAATGCGCAAGCCGGGG
* * * * * * * ** *
34756684 ATCGGCCCAGG-CCCCCTCTGCGTGCTGTCGGTCCCGCTACCACAACCCTCAGTTCGGTTAG-GG
64 ATCGTCCC-GGTCCCCC-CTGCGTGCTGTCGATCCTGCTGCCACAACCCTCTGTCCAGTCCGATG
* *
34756747 CTTAGACATGGAATGAACT-TCCTATGCCTAAG
127 -TTAGAC-TGGAATGAACTCT-GTATGCATAAG
* * * * * * *
34756779 CCAGCCCACAGAACGAGCGTGCGGGCACTCAGCCGACCGGAGAGGTAGAATGCGCAAGCTGAGGA
1 CCAACCCACAAAATGAGCGTGCGGGCACTGAGCCGACC-GAGAGGCAGAATGCGCAAGCCGGGGA
* * * * * * *
34756844 TCGGCCCAGTCCCCCCTGCGTGCTGTCGATCCTCCTGTCACAACCCTC-GACCCGGTCCGATCTT
65 TCGTCCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGCCACAACCCTCTG-TCCAGTCCGATGTT
*
34756908 AAACTAGGAATGAACTC
129 AGACT-GGAATGAACTC
34756925 CACATGTTGA
Statistics
Matches: 484, Mismatches: 108, Indels: 60
0.74 0.17 0.09
Matches are distributed among these distances:
157 12 0.02
158 167 0.35
159 292 0.60
160 13 0.03
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.20
Consensus pattern (156 bp):
CCAACCCACAAAATGAGCGTGCGGGCACTGAGCCGACCGAGAGGCAGAATGCGCAAGCCGGGGAT
CGTCCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGCCACAACCCTCTGTCCAGTCCGATGTTAG
ACTGGAATGAACTCTGTATGCATAAG
Found at i:34756861 original size:317 final size:317
Alignment explanation
Indices: 34756158--34756924 Score: 890
Period size: 317 Copynumber: 2.4 Consensus size: 317
34756148 CCCACGAAAT
* * * * *
34756158 GAGCGTGCGGGCTCTCAGTCGATCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCGCC
1 GAGCGTGCGGGCACTCAGCCGACCGGAGAGGTAGAATGCGCAAGCCGAGGATCGACCCGGTCACC
* * ** * *
34756223 CCCTGCGTGCTGTCGATCTTGCTGCCGCAACCCT-TGGT-TTGATCTGATCTTAGATTGGGAATG
66 CCCTGCGTGCTGTCGATCCTGCTGTCGCAACCCTCT-GTCCAG-TCCGATCTTAGACTGGGAATG
** *
34756286 ATA-TCTGTATGCATAAGTCAACCCATGAAATGAGCGTGCAGGCACTGAGCTGACCGAAGAGGCA
129 A-ACTCTGTATGCATAAGTCAACCCACAAAATGAGCGTGCAGGCACTGAGCTGACCGAAAAGGCA
* * *
34756350 TAATGCGCAAGCCAGGGATCGATCGGTCCCCCTTTGCGTGCTGTCGGTCCCGCTGCCACAACCCT
193 TAATGCGCAAGCCAGGGATCGACCGGTCCCCCTCTGCGTGCTGTCGGTCCCGCTACCACAACCCT
* * * *
34756415 CGGTCCAGCTGGTGCTTAGACATGGAATGAACTCCGTATGGCTAAGCCAAGCCACGGAAT
258 CAGTCCAGCTGGTGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAGCCACAGAAC
* ** * * * * * * * *
34756475 GAGAGTGCGGGTGCTTAACCGGCCAGAGAGGTAGAATGCACAAGCCGGGGATCGTCCTGGTCACC
1 GAGCGTGCGGGCACTCAGCCGACCGGAGAGGTAGAATGCGCAAGCCGAGGATCGACCCGGTCACC
* *
34756540 CCCTGCGTGCTGTCGATCCTGCTATCGCAACCCTCTGTCCAGTCCGATGTTAGACTGGGAATGAA
66 CCCTGCGTGCTGTCGATCCTGCTGTCGCAACCCTCTGTCCAGTCCGATCTTAGACTGGGAATGAA
* * *
34756605 CTCTGTATGCATAAGTCAACGCACAAAACT-AGCGTGCGGGCACTGAG-TCGGCCGAAAAGGCAT
131 CTCTGTATGCATAAGTCAACCCACAAAA-TGAGCGTGCAGGCACTGAGCT-GACCGAAAAGGCAT
* * *
34756668 AATGCGCAAGTCGGGGATCGGCCCAGG-CCCCCTCTGCGTGCTGTCGGTCCCGCTACCACAACCC
194 AATGCGCAAGCCAGGGATC-GACC-GGTCCCCCTCTGCGTGCTGTCGGTCCCGCTACCACAACCC
* * *
34756732 TCAGTTCGGTTAGG-GCTTAGACATGGAATGAACTTCC-TATGCCTAAGCC-AGCCCACAGAAC
257 TCAGTCCAGCT-GGTGCTTAGACATGGAATGAAC-TCCGTATGCCTAAGCCAAG-CCACAGAAC
* * *
34756793 GAGCGTGCGGGCACTCAGCCGACCGGAGAGGTAGAATGCGCAAGCTGAGGATCGGCCCAGTC-CC
1 GAGCGTGCGGGCACTCAGCCGACCGGAGAGGTAGAATGCGCAAGCCGAGGATCGACCCGGTCACC
* * * * * *
34756857 CCCTGCGTGCTGTCGATCCTCCTGTCACAACCCTC-GACCCGGTCCGATCTTAAACTAGGAATGA
66 CCCTGCGTGCTGTCGATCCTGCTGTCGCAACCCTCTG-TCCAGTCCGATCTTAGACTGGGAATGA
34756921 ACTC
130 ACTC
34756925 CACATGTTGA
Statistics
Matches: 376, Mismatches: 63, Indels: 22
0.82 0.14 0.05
Matches are distributed among these distances:
316 3 0.01
317 233 0.62
318 133 0.35
319 7 0.02
ACGTcount: A:0.22, C:0.29, G:0.29, T:0.20
Consensus pattern (317 bp):
GAGCGTGCGGGCACTCAGCCGACCGGAGAGGTAGAATGCGCAAGCCGAGGATCGACCCGGTCACC
CCCTGCGTGCTGTCGATCCTGCTGTCGCAACCCTCTGTCCAGTCCGATCTTAGACTGGGAATGAA
CTCTGTATGCATAAGTCAACCCACAAAATGAGCGTGCAGGCACTGAGCTGACCGAAAAGGCATAA
TGCGCAAGCCAGGGATCGACCGGTCCCCCTCTGCGTGCTGTCGGTCCCGCTACCACAACCCTCAG
TCCAGCTGGTGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAGCCACAGAAC
Found at i:34757943 original size:159 final size:158
Alignment explanation
Indices: 34757638--34758102 Score: 395
Period size: 159 Copynumber: 2.9 Consensus size: 158
34757628 AACTCCATTT
* * * **
34757638 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGC--GAGCGTTC
1 GCTTAAACATGGAATGAACTCCCTATGCATAAGCCAACCCATAAAACGAGCGTGCAGGAGC--TC
** * * *
34757701 AGTC-AGCC-AGAGAGCCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCTCTACGTGCTGTC
64 AACCGA-CCGA-AGAGGCAGAATGCGCAAGCCG-GGATCGACCCGGTCCCCCTCTACGTGCTGAC
* * * *
34757764 GATCTTGCTGCCGCAACCCTCGATCCGATCTA-G
126 GATCCTACTGCCACAACCCTCGATCC-AGCTAGG
* ** * * *
34757797 TCTTAAAC-TGGGAATGAACTCTGTATGCATAAGTCAACCCATAAAACGAGCGTGCGGGAGCTGA
1 GCTTAAACAT-GGAATGAACTCCCTATGCATAAGCCAACCCATAAAACGAGCGTGCAGGAGCTCA
* * * * * *
34757861 GCCGATCGAAGAGGCATAGTGCGCAAGCCAGGGATCGACCCGGTCCCCCTCTTCGTGCTGACGGT
65 ACCGACCGAAGAGGCAGAATGCGCAAGCC-GGGATCGACCCGGTCCCCCTCTACGTGCTGACGAT
* * *
34757926 CCTACTGCTACAGCCCTCGGTCCAGCTAGG
129 CCTACTGCCACAACCCTCGATCCAGCTAGG
* ** * * *
34757956 GCTTAAACATGGAATGAACTCCCTATGCCTAAGCCAATGCATGAAACGGGCGTGCAGGCGCTCAA
1 GCTTAAACATGGAATGAACTCCCTATGCATAAGCCAACCCATAAAACGAGCGTGCAGGAGCTCAA
* * * * ** * *
34758021 TCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCAGT-CCCCTCTGTGTGCTGTCAATC
66 CCGACCGAAGAGGCAGAATGCGCAAGCC-GGGATCGACCCGGTCCCCCTCTACGTGCTGACGATC
* *
34758085 CTGCTGCCGCAACCCTCG
130 CTACTGCCACAACCCTCG
34758103 GTCCGGTTCG
Statistics
Matches: 244, Mismatches: 54, Indels: 17
0.77 0.17 0.05
Matches are distributed among these distances:
158 35 0.14
159 201 0.82
160 4 0.02
161 4 0.02
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.18
Consensus pattern (158 bp):
GCTTAAACATGGAATGAACTCCCTATGCATAAGCCAACCCATAAAACGAGCGTGCAGGAGCTCAA
CCGACCGAAGAGGCAGAATGCGCAAGCCGGGATCGACCCGGTCCCCCTCTACGTGCTGACGATCC
TACTGCCACAACCCTCGATCCAGCTAGG
Found at i:34758503 original size:26 final size:26
Alignment explanation
Indices: 34758474--34758526 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
34758464 CCAATCCGAT
34758474 CTTAGACTGCGAATGAACTCCATATG
1 CTTAGACTGCGAATGAACTCCATATG
* * * *
34758500 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGCGAATGAACTCCATATG
34758526 C
1 C
34758527 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGCGAATGAACTCCATATG
Found at i:34759233 original size:26 final size:26
Alignment explanation
Indices: 34759195--34759247 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34759185 GGCTCAAAAT
34759195 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
34759221 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
34759247 C
1 C
34759248 CTAAGCTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:34759551 original size:158 final size:158
Alignment explanation
Indices: 34759220--34759722 Score: 419
Period size: 158 Copynumber: 3.2 Consensus size: 158
34759210 AACTCCATAT
* * * *
34759220 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGAACGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGC-AACCCACGAAATGAACGAGCAGGCACTCAA
* * * * *
34759285 TCGATCGGAGAGGCAGAATGCGTAAGCCGGGGATCGACCCGATTCCCCCCTGCGTGCTGTCGATT
65 CCGACCGAAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATTCCCCCCTGCGTGCTGTCGATT
* *
34759350 CTGCTACCATAACCCTCGGTCCGGTCTGA
130 CTGCTACCACAACCATCGGTCCGGTCTGA
* * * * *
34759379 TCTTAGACAAGGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAACGAGCAGGCACTGAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAG-CAACCCACGAAATGAACGAGCAGGCACTCAA
* * *
34759444 CCGACCGAAGAGGCATAATG-GCAAGCCAGGGATTGACCCGA-TCCCCCTCTGCGTGCTG-CTAT
65 CCGACCGAAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATTCCCCC-CTGCGTGCTGTCGAT
* * * * *
34759506 TCCTGCTGCCACAAGCATTGGTCTGGT-TGGG
129 T-CTGCTACCACAACCATCGGTCCGGTCT-GA
* * * * * * *
34759537 GCTTAGCCATGGAATGAACTCCCTATGCCTAAGCCAACCCAAGAAATGGAC-ATCTGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAG-CAACCCACGAAATGAACGAGC-AGGCACTCA
* * * * * * * * * *
34759601 GCCGGCCGGAGAGGCAGAATGCGCAAGTCATGGATCGGCTCG-GTCCCCCTTGCATGCTGTCGAT
64 ACCGACCGAAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATTCCCCCCTGCGTGCTGTCGAT
* * * ** *
34759665 CCTGCTGCCGCAA-CACTCACTCCGGTCCGA
129 TCTGCTACCACAACCA-TCGGTCCGGTCTGA
* * *
34759695 TCTTAAAC-TGGGAATGAACTCCATATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
34759723 TTAGACTGGG
Statistics
Matches: 274, Mismatches: 59, Indels: 23
0.77 0.17 0.06
Matches are distributed among these distances:
157 16 0.06
158 163 0.59
159 94 0.34
160 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCAACCCACGAAATGAACGAGCAGGCACTCAAC
CGACCGAAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATTCCCCCCTGCGTGCTGTCGATTC
TGCTACCACAACCATCGGTCCGGTCTGA
Found at i:34759730 original size:26 final size:26
Alignment explanation
Indices: 34759696--34759748 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34759686 CCGGTCCGAT
34759696 CTTAAACTGGGAATGAACTCCATATG
1 CTTAAACTGGGAATGAACTCCATATG
* *
34759722 CTTAGACTGGGGATGAACTCCATATG
1 CTTAAACTGGGAATGAACTCCATATG
34759748 C
1 C
34759749 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCATATG
Found at i:34760099 original size:26 final size:26
Alignment explanation
Indices: 34760063--34760115 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34760053 CCGATCCGAT
34760063 CTTAGAATGGGAATGAACTCCATATG
1 CTTAGAATGGGAATGAACTCCATATG
* *
34760089 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGAATGGGAATGAACTCCATATG
34760115 C
1 C
34760116 CCAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCATATG
Found at i:34761648 original size:26 final size:26
Alignment explanation
Indices: 34761598--34761650 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
34761588 CCGGTCCGAT
*
34761598 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTACGTATG
* *
34761624 CTTAGACTGGGGATGAACTATGTATG
1 CTTAGACTGGGAATGAACTACGTATG
34761650 C
1 C
34761651 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:34762037 original size:159 final size:157
Alignment explanation
Indices: 34761624--34762037 Score: 402
Period size: 159 Copynumber: 2.6 Consensus size: 157
34761614 ACTCCGTATG
* *** * *
34761624 CTTAGACTGGGGATGAACTATGTATGCCTAAGCCAACCCACGGAACGAGCGTGCGGGCGCTTAGC
1 CTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACGGAACGAGCGTGCGGGCACTCAGC
* * * * * * * *
34761689 CAACCAGAGATGCAGAGTGCATAAGCCAGGGATCAACCAGTCCCCCTTACGTGCTGTCAGTCCTG
66 CAGCCGGAGAGGCAGAATGCGTAAGCCGGGGATCAACCAGTCCCCCTAACGTGCTGCCAGTCCTG
* * *
34761754 CTATCGCAACCCTCGGTCCGATCCAAT
131 CTACCACAACCCTCGATCCGATCCAAT
* * * * * * *
34761781 CTTAGACTGGGAATGAACTCCGTATGCATAAGACAACCCACGAAATGAGTGTGCGGGCACTGAGC
1 CTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACGGAACGAGCGTGCGGGCACTCAGC
* * * ** * * *
34761846 CAGCCGAAGAGGCATAATGCGCAAGTTGGGGATCGACCCCGTCCCCCTAAGCGT-CATGCCGGTC
66 CAGCCGGAGAGGCAGAATGCGTAAGCCGGGGATC-AACCAGTCCCCCTAA-CGTGC-TGCCAGTC
***
34761910 CTGCTACCACAACCCTCGATCCGATTGGGA-
128 CTGCTACCACAACCCTCGATCCGA-TCCAAT
* * *
34761940 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGGAACGGGCGTGCGGGCACTCAA
1 CTTAGAC-TGGGAATGAACTCCCTATGCCTAAGCCAACCCACGGAACGAGCGTGCGGGCACTCAG
* *
34762004 CCGGTCGGAGAGGCAGAATGCGTAAGCCGGGGAT
65 CCAGCCGGAGAGGCAGAATGCGTAAGCCGGGGAT
34762038 TGGCCCGGTC
Statistics
Matches: 203, Mismatches: 49, Indels: 8
0.78 0.19 0.03
Matches are distributed among these distances:
157 78 0.38
158 13 0.06
159 109 0.54
160 3 0.01
ACGTcount: A:0.26, C:0.29, G:0.28, T:0.18
Consensus pattern (157 bp):
CTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACGGAACGAGCGTGCGGGCACTCAGC
CAGCCGGAGAGGCAGAATGCGTAAGCCGGGGATCAACCAGTCCCCCTAACGTGCTGCCAGTCCTG
CTACCACAACCCTCGATCCGATCCAAT
Found at i:34763601 original size:26 final size:25
Alignment explanation
Indices: 34763566--34763615 Score: 82
Period size: 26 Copynumber: 2.0 Consensus size: 25
34763556 CTCAAAATCC
*
34763566 TAGACTGGAATGAACTCCATATGCT
1 TAGACTGGAATAAACTCCATATGCT
34763591 TAGACATGGAATAAACTCCATATGC
1 TAGAC-TGGAATAAACTCCATATGC
34763616 CTAAGCAAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 5 0.22
26 18 0.78
ACGTcount: A:0.36, C:0.20, G:0.18, T:0.26
Consensus pattern (25 bp):
TAGACTGGAATAAACTCCATATGCT
Found at i:34763927 original size:25 final size:26
Alignment explanation
Indices: 34763899--34763958 Score: 79
Period size: 26 Copynumber: 2.3 Consensus size: 26
34763889 CTTTGATCTG
34763899 ATCCGAT-CTTAGACTGGGAATGAAC
1 ATCCGATGCTTAGACTGGGAATGAAC
* *
34763924 ATCCCATGCTTAGACTGGGGATGAAC
1 ATCCGATGCTTAGACTGGGAATGAAC
34763950 -TCCGTATGC
1 ATCCG-ATGC
34763959 CTAAGTCAAC
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
25 9 0.30
26 21 0.70
ACGTcount: A:0.27, C:0.23, G:0.25, T:0.25
Consensus pattern (26 bp):
ATCCGATGCTTAGACTGGGAATGAAC
Found at i:34765370 original size:159 final size:158
Alignment explanation
Indices: 34764999--34765379 Score: 399
Period size: 158 Copynumber: 2.4 Consensus size: 158
34764989 AACTCTGTAT
* * * *
34764999 GCTTAGACATGGAATGAACTTCGTATACCTAAGCCAACCCATGAAACGAGCATGCTGGCGCTCAG
1 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAG
* * * * * * *
34765064 TCGACCGGAGAGGCAGAATGCACAAGCCAGAGACCGACCCGGTCCCCCCTGTGTGCTGTTGATCT
66 CCGACCGAAGAGACAGAATGCACAAGCCAGAGACCGACCCAGTCCCCCCTGCGTGCTGTCGATCC
* ** * *
34765129 TGCTGCTGCAACCCTCTATTCGATCTAA
131 CGCTGCCACAACCCTCTATCCGAGCTAA
* * * ** *
34765157 TCTTAGAC-TAGGAATGAACTTCGTATGCATAAGTCAACCCATGAAATAAGCGTGCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCA
* * * * * *
34765221 GCCGGCCGAAGAGACATAATGCGCAAGCCAGGGATCGACCCAGTCCCCCTCTGCGTGCTGTCGGT
65 GCCGACCGAAGAGACAGAATGCACAAGCCAGAGACCGACCCAGTCCCCC-CTGCGTGCTGTCGAT
* *
34765286 CCCGCTGCCACAACCCT-TGGTCCG-GCTGGA
129 CCCGCTGCCACAACCCTCT-ATCCGAGCT-AA
* * * *
34765316 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGATCGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCA
34765380 TCCGGATGGA
Statistics
Matches: 178, Mismatches: 40, Indels: 9
0.78 0.18 0.04
Matches are distributed among these distances:
157 1 0.01
158 95 0.53
159 81 0.46
160 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.25, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAG
CCGACCGAAGAGACAGAATGCACAAGCCAGAGACCGACCCAGTCCCCCCTGCGTGCTGTCGATCC
CGCTGCCACAACCCTCTATCCGAGCTAA
Found at i:34765408 original size:159 final size:158
Alignment explanation
Indices: 34764999--34765460 Score: 432
Period size: 159 Copynumber: 2.9 Consensus size: 158
34764989 AACTCTGTAT
* * *
34764999 GCTTAGACATGGAATGAACTTCGTATACCTAAGCCAACCCATGAAACGAGCATGCTGGCGCTCAG
1 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA-
* * * * *
34765064 T-C-GACCGGAGAGGCAGAATGCACAAGCCAGAGACCGACCCGGTCCCCCCTGTGTGCTGTTGAT
65 TCCGGA-CGGAGAGGCAGAATGCACAAGCCAGGGATCGACCCAGTCCCCCCTGCGTGCTGTCGAT
** ** * *
34765127 CTTGCTGCTGCAACCCTCTATTCGATCTAA
129 CCCGCTGCCACAACCCTCTATCCGAGCTAA
* * * ** * *
34765157 TCTTAGAC-TAGGAATGAACTTCGTATGCATAAGTCAACCCATGAAATAAGCGTGCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
* * * * * * *
34765221 GCCGGCCGAAGAGACATAATGCGCAAGCCAGGGATCGACCCAGTCCCCCTCTGCGTGCTGTCGGT
65 TCCGGACGGAGAGGCAGAATGCACAAGCCAGGGATCGACCCAGTCCCCC-CTGCGTGCTGTCGAT
* *
34765286 CCCGCTGCCACAACCCT-TGGTCCG-GCTGGA
129 CCCGCTGCCACAACCCTCT-ATCCGAGCT-AA
* * *
34765316 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGATCGTGCGGGCGCTCAT
1 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAT
* * * * * * * *
34765381 CCGGATGGAGAGGCAGAATGCATAAGCCGGGGATCG-GCCAATTCACCCTGCATGCTGTCGATCC
66 CCGGACGGAGAGGCAGAATGCACAAGCCAGGGATCGACCCAGTCCCCCCTGCGTGCTGTCGATCC
* **
34765445 TGCTGCCGTAACCCTC
131 CGCTGCCACAACCCTC
34765461 GATTCGGTCT
Statistics
Matches: 238, Mismatches: 58, Indels: 16
0.76 0.19 0.05
Matches are distributed among these distances:
157 28 0.12
158 99 0.42
159 110 0.46
160 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAT
CCGGACGGAGAGGCAGAATGCACAAGCCAGGGATCGACCCAGTCCCCCCTGCGTGCTGTCGATCC
CGCTGCCACAACCCTCTATCCGAGCTAA
Found at i:34766363 original size:26 final size:26
Alignment explanation
Indices: 34766327--34766379 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34766317 CTGGTTTGAT
*
34766327 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
*
34766353 CTTAGACTAGGGATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
34766379 C
1 C
34766380 CCAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:34767418 original size:26 final size:26
Alignment explanation
Indices: 34767377--34767429 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
34767367 TCGGTCCAAT
*
34767377 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
34767403 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
34767429 C
1 C
34767430 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:34768640 original size:26 final size:26
Alignment explanation
Indices: 34768597--34768649 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
34768587 CTAGTTCGAT
*
34768597 CTTAGACTGAGAATGAACTCCATATG
1 CTTAGACTGAGAACGAACTCCATATG
* * *
34768623 CTTAGACTGGGGACGAACTCCGTATG
1 CTTAGACTGAGAACGAACTCCATATG
34768649 C
1 C
34768650 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGAGAACGAACTCCATATG
Found at i:34768993 original size:26 final size:26
Alignment explanation
Indices: 34768964--34769016 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
34768954 CTGATTTGAT
* *
34768964 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
34768990 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
34769016 C
1 C
34769017 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34770560 original size:158 final size:158
Alignment explanation
Indices: 34770050--34770602 Score: 584
Period size: 158 Copynumber: 3.5 Consensus size: 158
34770040 GCCTTCAATA
* * * * **
34770050 CCTCTCCGGTTGGCTCAGCGCCTGCACGTTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
1 CCTCTCCGATCGGCTAAGCACCTGCACGCCCATTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
* * * **
34770115 TCCCAGTCTAAGATCGGACCGGACCAAGGGTTACGGTAGCAAGATCGGCAGCACGCAGGGGGGAT
66 TCCCAGTCTAAGATCAGACCGGACCAAGGGTTACGGCAGCAGGATCGATAGCACGCAGGGGGGAT
*
34770180 CGGGCCGATCCTCGGCTTGCGCATTCT-
131 CGGGCCGATCCCCGGCTTGCGCATTCTG
* * * * *
34770207 CCTCTCCGATCGGCTGAGCACCTGTACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCAT
1 CCTCTCCGATCGGCTAAGCACCTGCACGCCCATTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
** * ** ** *
34770272 T-CCATGTCTAAGCCCCAG-CCGAACTGAGGGTTGTGGCAG-TGGTATCGATAGCACGTACA-GG
66 TCCCA-GTCTAAG-ATCAGACCGGACCAAGGGTTACGGCAGCAGG-ATCGATAGCACG--CAGGG
* **
34770333 GGGTTCGGGCCGATCCCCGGCTTGCGCATTAAG
126 GGGATCGGGCCGATCCCCGGCTTGCGCATTCTG
* * ** * * *
34770366 ACTCTCTGATCGGCCCAGCACCTGCACACCCATTTCGTGGGTTGACTAATGCATAC-GAGTTCAT
1 CCTCTCCGATCGGCTAAGCACCTGCACGCCCATTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
34770430 TCCCAGTCTAAGATCAGACCGGACCAAGGGTTACGGCAGCAGGATCGATAGCACGCAGGGGGGGA
66 TCCCAGTCTAAGATCAGACCGGACCAAGGGTTACGGCAGCAGGATCGATAGCACGCA-GGGGGGA
34770495 TCGGGCCGATCCCCGGCTTGCGCATTCTG
130 TCGGGCCGATCCCCGGCTTGCGCATTCTG
* *** * *
34770524 CCTCTCC-AGCCAATTAAGCGA-CTGCACGCTCGTTTCGTGGGTT-AGCTTAGGCATACGGAGTT
1 CCTCTCCGA-TCGGCTAAGC-ACCTGCACGCCCATTTCGTGGGTTGA-CTTAGGCATACGGAGTT
*
34770586 CATTCCCAGTCTTAGAT
63 CATTCCCAGTCTAAGAT
34770603 TTTGAGCCAC
Statistics
Matches: 318, Mismatches: 63, Indels: 28
0.78 0.15 0.07
Matches are distributed among these distances:
156 6 0.02
157 93 0.29
158 145 0.46
159 74 0.23
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.23
Consensus pattern (158 bp):
CCTCTCCGATCGGCTAAGCACCTGCACGCCCATTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
TCCCAGTCTAAGATCAGACCGGACCAAGGGTTACGGCAGCAGGATCGATAGCACGCAGGGGGGAT
CGGGCCGATCCCCGGCTTGCGCATTCTG
Found at i:34772122 original size:26 final size:26
Alignment explanation
Indices: 34772086--34772135 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
34772076 TGGCTTAGGC
*
34772086 ATACGGAGTTCATT-CCATGTCTAAGT
1 ATACGAAGTTCATTCCCA-GTCTAAGT
34772112 ATACGAAGTTCATTCCCAGTCTAA
1 ATACGAAGTTCATTCCCAGTCTAA
34772136 AATCAGACTA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.30, C:0.22, G:0.16, T:0.32
Consensus pattern (26 bp):
ATACGAAGTTCATTCCCAGTCTAAGT
Found at i:34772499 original size:26 final size:26
Alignment explanation
Indices: 34772463--34772515 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
34772453 GTTGACTTAG
34772463 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
34772489 GCATATGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
34772515 G
1 G
34772516 ATTGAACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:34772566 original size:183 final size:183
Alignment explanation
Indices: 34772360--34772785 Score: 493
Period size: 183 Copynumber: 2.3 Consensus size: 183
34772350 ATCGACAGTG
* * * *
34772360 GGATCGACAGCACACAGAGGGGGATCGAGCTGATCCTCGACTTACGCATTATGCCTCTCTGACTG
1 GGATCGACAGCACGC--AGGGGGATCGAGCTGATCCTCGACTTGCGCATTCTGCCTCTCCGACTG
*
34772425 ACTGAGCACCC-ACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTA
64 ACTGAGCACCCGA-ACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT-CCCATGTCTA
* * * * * * **
34772488 AGCATATGGAGTTTATTCCCAGTCTAAGAT-TGAACTGGACCGAGGGTTGCGGCTGCA
127 AGCATACGGAATTCATTCCCAGTCTAAGATCAG-ACCGGACCGAGGGTTGCAGCAACA
* * * * *
34772545 GGATCGACAGCACGCAGGGGGATTG-GGTCGATCCTCGACTTGTGCATTCTGCCTCTCCGGCTGG
1 GGATCGACAGCACGCAGGGGGATCGAGCT-GATCCTCGACTTGCGCATTCTGCCTCTCCGACTGA
* * * *
34772609 CTGAGCACCCGAATGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCTATGTCTAAGC
65 CTGAGCACCCGAACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCATGTCTAAGC
34772674 ATACGGAATTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAACA
130 ATACGGAATTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAACA
* * * * *
34772728 GGATCTATAGCACGTAGAGGGGGATCAAGCTGATCC-CTAACTTGCGCATTCTGCCTCT
1 GGATCGACAGCACG--CAGGGGGATCGAGCTGATCCTC-GACTTGCGCATTCTGCCTCT
34772786 TCGGTCGGCT
Statistics
Matches: 203, Mismatches: 30, Indels: 16
0.82 0.12 0.06
Matches are distributed among these distances:
182 4 0.02
183 149 0.73
184 3 0.01
185 45 0.22
186 2 0.01
ACGTcount: A:0.22, C:0.26, G:0.27, T:0.25
Consensus pattern (183 bp):
GGATCGACAGCACGCAGGGGGATCGAGCTGATCCTCGACTTGCGCATTCTGCCTCTCCGACTGAC
TGAGCACCCGAACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCATGTCTAAGCA
TACGGAATTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAACA
Found at i:34772695 original size:26 final size:26
Alignment explanation
Indices: 34772646--34772698 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
34772636 GTTGGCTTAG
* *
34772646 GCATACGGAGTTCATTCTATGTCTAA
1 GCATACGGAATTCATTCCATGTCTAA
34772672 GCATACGGAATTCATTCCCA-GTCTAA
1 GCATACGGAATTCATT-CCATGTCTAA
34772698 G
1 G
34772699 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAATTCATTCCATGTCTAA
Found at i:34773214 original size:158 final size:156
Alignment explanation
Indices: 34772977--34773503 Score: 463
Period size: 158 Copynumber: 3.3 Consensus size: 156
34772967 GAGTGCCCTC
*
34772977 ACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACTAGACC
1 ACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACTGGACC
* ** * * *
34773042 AAAGGTTGCAGCAGCAGGATCGGCAGCATGCAGGGGGGACCAGGCCAATCACCGGCTTATGCATT
66 GAAGGTTGTGGCAGCAGGATCAGCAGCATGCAGGGGGGACCAGGCCGATC-CCGGCTTACGCATT
*
34773107 CCACCTCTCCAGTCGACTGCGCACCCGT
130 CTACCTCTCC-GTCGACTGCGCACCCGT
* * * * **
34773135 ACACCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCAT-AG-CTGG
1 ACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCA-GTCTAAG--ATCAGACTGG
* * * * * *** * *
34773197 ACCGATGGTTGTGGCAGCGGGACCAGCAGCACGTAGAGATAGAGCAGGCTGATCCCCGGCTTACG
63 ACCGAAGGTTGTGGCAGCAGGATCAGCAGCATGCAG-GGGGGACCAGGCCGAT-CCCGGCTTACG
* * * * * * *
34773262 CATTATGCCTTTTCGGCCAGCT-CAGCGCCCGT
126 CATTCTACCTCTCCGTCGA-CTGC-GCACCCGT
* * *
34773294 ACGCTCGTTTCATGGGTTGACTTATGCATACAGAGTTCATTCCCAGTGTAAGATCAGATTGGACC
1 ACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACTGGACC
* * * * * * *
34773359 GAGGGTTGTGGCAGTAGGATCAACAGCATGCAAGGGGAACC-GAGTCGATCCTCGGCTTGCGCAT
66 GAAGGTTGTGGCAGCAGGATCAGCAGCATGCAGGGGGGACCAG-GCCGATCC-CGGCTTACGCAT
* * * *
34773423 TCTACCTCTCCGATCGGCTGAGCACCTGC
129 TCTACCTCTCCG-TCGACTGCGCACCCGT
* * *
34773452 ACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAG
1 ACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCA-GTCTAAG
34773504 CATACGCAGT
Statistics
Matches: 282, Mismatches: 72, Indels: 30
0.73 0.19 0.08
Matches are distributed among these distances:
157 11 0.04
158 154 0.55
159 111 0.39
160 6 0.02
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (156 bp):
ACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACTGGACC
GAAGGTTGTGGCAGCAGGATCAGCAGCATGCAGGGGGGACCAGGCCGATCCCGGCTTACGCATTC
TACCTCTCCGTCGACTGCGCACCCGT
Found at i:34774664 original size:21 final size:22
Alignment explanation
Indices: 34774640--34774690 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 22
34774630 CTGAAGTACT
34774640 GACCTTGC-ACGATGGCATGG-A
1 GACCTTGCGACGATGG-ATGGAA
* *
34774661 GACCATGCGCCGATGGATGGAA
1 GACCTTGCGACGATGGATGGAA
34774683 GACCTTGC
1 GACCTTGC
34774691 TAGTGAGCTC
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
21 11 0.44
22 14 0.56
ACGTcount: A:0.24, C:0.25, G:0.33, T:0.18
Consensus pattern (22 bp):
GACCTTGCGACGATGGATGGAA
Found at i:34779702 original size:26 final size:26
Alignment explanation
Indices: 34779672--34779724 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34779662 GTTGACTTAG
34779672 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
34779698 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
34779724 G
1 G
34779725 ATCTGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:34780076 original size:26 final size:26
Alignment explanation
Indices: 34780040--34780118 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
34780030 GTTGACTTAG
34780040 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
34780066 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
34780092 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
34780118 G
1 G
34780119 ATCGGACTGG
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:34780626 original size:158 final size:157
Alignment explanation
Indices: 34780394--34780922 Score: 473
Period size: 158 Copynumber: 3.4 Consensus size: 157
34780384 TTGAGTGCCT
* * *
34780394 GCACGCTCGTTTCATGGGTTGACATAGGCATAGAGAGTTCATTCCCA-GTCTAAGATCAGACTGG
1 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCATGTCTAAGATCAGACTGG
* ** * *
34780458 ACTGAAGGTTGCAGCAGCAGGATCGGCAGAATGCAGGGGGGACCAGGCCAATCACTGACTTGCGC
66 AC-GAGGGTTGTGGCAGCAGGATCGGCAGCATGCAGGGGGGACCAGGCCGATC-CTGACTTGCGC
34780523 ATTCTACCTCTCCGGTCGGCTGCGCGCCC
129 ATTCTACCTCTCCGGTCGGCTGCGCGCCC
* * * * **
34780552 GTACACCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCAT-AG-CT
1 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCATGTCTAAG--ATCAGACT
* * * * ** * * * * *
34780614 GGATCGAGGGTTGTGGCAGCGGGACCAGCAGCACGCAGAGATGGAGCAGGCTGATCCCCGGCTTA
64 GGA-CGAGGGTTGTGGCAGCAGGATCGGCAGCATGCAG-GGGGGACCAGGCCGAT-CCTGACTTG
* * * * * *
34780679 CGCATTATGCCTTTTCGGCCAGCT-CAGCGCCC
126 CGCATTCTACCTCTCCGGTCGGCTGC-GCGCCC
* *
34780711 GCACGCTCGTTTCGTGGGTTGACTTATGCATACAGAGTTCATTCCCAATG--TAAGATCAGACCG
1 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCC-ATGTCTAAGATCAGACTG
* * * * * * *
34780774 GACCGAGGGTTGTGGCAGTAGGATCGACATCATGCAAGGGGAACC-GAGTCGATCCTCAGCTTGC
65 GA-CGAGGGTTGTGGCAGCAGGATCGGCAGCATGCAGGGGGGACCAG-GCCGATCCTGA-CTTGC
* * * *
34780838 ACATTCTACCTCTCCGGTCGGCTGAGCACCT
127 GCATTCTACCTCTCCGGTCGGCTGCGCGCCC
* *
34780869 GCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAG
1 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCATGTCTAAG
34780923 CATACGCAGT
Statistics
Matches: 286, Mismatches: 69, Indels: 32
0.74 0.18 0.08
Matches are distributed among these distances:
156 3 0.01
157 10 0.03
158 152 0.53
159 113 0.40
160 5 0.02
161 3 0.01
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.23
Consensus pattern (157 bp):
GCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCATGTCTAAGATCAGACTGG
ACGAGGGTTGTGGCAGCAGGATCGGCAGCATGCAGGGGGGACCAGGCCGATCCTGACTTGCGCAT
TCTACCTCTCCGGTCGGCTGCGCGCCC
Found at i:34780790 original size:159 final size:157
Alignment explanation
Indices: 34780357--34780796 Score: 386
Period size: 159 Copynumber: 2.8 Consensus size: 157
34780347 CTAATCCTCA
* * * * * * *
34780357 GCTTGCGCATTATGCCTTTTCGACCGATTGAGTGCCTGCACGCTCGTTTCATGGGTTGACATAGG
1 GCTTGCGCATTATGCCTTTTCGGCCG-CTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
* * * * ** * *
34780422 CATAGAGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAAGGTTGCAGCAGCAGGATCGGCAG
65 CATAGAGAGTTCATTCCCAATGTAAGATCAGACTGGACCGAGGGTTGTGGCAGCAGGACCAGCAG
* * *
34780487 AATGCAGGGGGGACCAGGCCAATCACTG
130 AACGCAGGAGGGACCAGGCCAATCACCG
* * * * * * * * * *
34780515 ACTTGCGCATTCTACCTCTCCGGTCGGCTGC-GCGCCCGTACACCCGTTTCGTGGGTTGGCTTAG
1 GCTTGCGCATTATGCCTTTTCGG-CCGCT-CAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * *
34780579 GCATAGGGAGTTCATT-CC-ATGTCTAAGCCAT-AG-CTGGATCGAGGGTTGTGGCAGCGGGACC
64 GCATAGAGAGTTCATTCCCAATG--TAAG--ATCAGACTGGACCGAGGGTTGTGGCAGCAGGACC
* * * ** *
34780640 AGCAGCACGCAGAGATGGAGCAGGCTGATCCCCG
125 AGCAGAACGCAG-GAGGGACCAGGCCAATCACCG
* *
34780674 GCTTACGCATTATGCCTTTTCGGCCAGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTATG
1 GCTTGCGCATTATGCCTTTTCGGCC-GCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
* * *
34780739 CATACAGAGTTCATTCCCAATGTAAGATCAGACCGGACCGAGGGTTGTGGCAGTAGGA
65 CATAGAGAGTTCATTCCCAATGTAAGATCAGACTGGACCGAGGGTTGTGGCAGCAGGA
34780797 TCGACATCAT
Statistics
Matches: 214, Mismatches: 55, Indels: 25
0.73 0.19 0.09
Matches are distributed among these distances:
156 1 0.00
157 4 0.02
158 96 0.45
159 106 0.50
160 4 0.02
161 3 0.01
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (157 bp):
GCTTGCGCATTATGCCTTTTCGGCCGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
ATAGAGAGTTCATTCCCAATGTAAGATCAGACTGGACCGAGGGTTGTGGCAGCAGGACCAGCAGA
ACGCAGGAGGGACCAGGCCAATCACCG
Found at i:34780933 original size:26 final size:26
Alignment explanation
Indices: 34780896--34780948 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34780886 GTTGGCTTAG
*
34780896 GCATACGGAGTTCATTC-CATGTCTAA
1 GCATACGCAGTTCATTCTCA-GTCTAA
34780922 GCATACGCAGTTCATTCTCAGTCTAA
1 GCATACGCAGTTCATTCTCAGTCTAA
34780948 G
1 G
34780949 ATTTTGACGC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGCAGTTCATTCTCAGTCTAA
Found at i:34781813 original size:26 final size:26
Alignment explanation
Indices: 34781783--34781835 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34781773 GTTGACTTAG
*
34781783 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
34781809 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
34781835 G
1 G
34781836 ATCAGACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:34783038 original size:26 final size:26
Alignment explanation
Indices: 34783009--34783061 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34782999 GTTGACTTAG
34783009 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
34783035 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
34783061 G
1 G
34783062 ATCGGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:34783390 original size:26 final size:26
Alignment explanation
Indices: 34783359--34783411 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34783349 GTTAACTTAG
*
34783359 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
*
34783385 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
34783411 G
1 G
34783412 ATCAAACCGC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:34784162 original size:527 final size:523
Alignment explanation
Indices: 34783341--34785259 Score: 1617
Period size: 527 Copynumber: 3.7 Consensus size: 523
34783331 CATACGCTCA
* *
34783341 TTTTGTGGGTTAACTTAGGCATACGGAGTTCATCCCCAATCTAAGCATACAGAGTTCATTCCCAA
1 TTTTGTGGGTTAACTTAGGCATAC-GAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAA
* * * * * * *
34783406 TCTAAGATCAAACCGCATCGAGGGTTGCGATAGCAGGATCGACAGCACGCAGGGGGAACCAGGCC
65 TCTAAGATCGAACCGAACCGAGGGTTGCGATAGTAGGATCGACAGCACGCAGGGGG-ATCGGGTC
* * * * * * * * *
34783471 GATCCCCGGCTTGCGCATTCTACCTCTTCGGTCGGCTAAGCGCCTGCACGCCCGTTTCATGGGTT
129 GATCCCC-GCTTGCGGATTCTGCCTC-TCCGACCGCTGAGTGCCCGTACGCCCGTTTCATGGGTT
*
34783536 GGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTATGGTAGCGGG
192 GGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGTAGCGGG
* * * * *
34783601 ACCGACAGCACGCAGAGGGGGACCAAGTTGATCCCCAGCTTACGCATTATGCCTTTCCGATCGAC
257 ACCGACAGCACGCAGAGGGGGACCGAGCTGATCCCCAGCTTGCGCATTATGCCTCTCCGATAGAC
* *** * *
34783666 TCAGTGTCGGTACGCTCGTTTTATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCC
322 TAAGCACCCGAACGCTCGTTTTATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCC
* * *
34783731 CCAGCCAGA-CAGAGGGTTGTGGTAGCAGGACCGACGAACAGGATCTA-TAGCACGTATAGGGGG
387 CCAGCCAGATC-GAGCGTTGTGGTAGCAGGACCGAC-AACAGGATC-AGCAGCACGTAGAGGGGG
* * * * *
34783794 ACTGGGTTAAT-CCTCAGCTTGCGTATTATTCCTCTCCGGTCGGCCTCT-TCGATCGGCTGAGCG
449 ACTGGGCTAATCCCT-AGCTTGCGCATTATGCCTCTCCGGCCGGCCTCTCT-GACCGGCTGAGCG
34783857 -CTCGTACACTCG
512 CCT-GTACACTCG
* * * *
34783869 TTTTATGGGTTGACTTAGGAATACAGAGTTCATCCCCAGTCTACGCATACGGAGTTCATTCCCAA
1 TTTTGTGGGTTAACTTAGGCATAC-GAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAA
* * * * * *
34783934 TCCAAGATCGGACCGAACCGAGGGTTACGATAGTAGGATCGGCAGCATGCAAGGGGATCGGGTCG
65 TCTAAGATCGAACCGAACCGAGGGTTGCGATAGTAGGATCGACAGCACGCAGGGGGATCGGGTCG
* * * *
34783999 TTCCTCTGCTTGCGGATTCTGCCTCTCCGACCAGCTGAGTGCCCGTACGCCCATTTCATGGATTG
130 ATCC-CCGCTTGCGGATTCTGCCTCTCCGACC-GCTGAGTGCCCGTACGCCCGTTTCATGGGTTG
* *
34784064 GCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGTCGGACCGAGGGTTGTGTTAGCGGGA
193 GCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGTAGCGGGA
* * * * **
34784129 CCGACAGCACGCAGAGGGGGACCGGGCTGATCCCCAGCTTGTGCATTCTGCCTCTCCGGTAGGTT
258 CCGACAGCACGCAGAGGGGGACCGAGCTGATCCCCAGCTTGCGCATTATGCCTCTCCGATAGACT
* *
34784194 AAGCACCCGAACGCTTGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCC
323 AAGCACCCGAACGCTCGTTTTATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCC
** ** * ***
34784259 CAGCTGGATCGAGCGTTGTGGTAGCAGGATTGGCAGTGGGATCAGCAGCACGTAGAGGGGGACTG
388 CAGCCAGATCGAGCGTTGTGGTAGCAGGACCGACAACAGGATCAGCAGCACGTAGAGGGGGACTG
* * * * * *
34784324 GGCTGATCCCTGGCTTGCGCATTATGCCTCTTCGGCCTGCCTCTCTGACCGGTTGAGTGCCTGTA
453 GGCTAATCCCTAGCTTGCGCATTATGCCTCTCCGGCCGGCCTCTCTGACCGGCTGAGCGCCTGTA
*
34784389 CGCTCG
518 CACTCG
* * * * * *
34784395 TTTCGTGGGTTAACTTAGGCATACGAAGTTTATCCCCAGTCCAATCATACGAAGTTCATTCCCAG
1 TTTTGTGGGTTAACTTAGGCATACG-AGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAA
* * * * *
34784460 TCTAAGATCGAATC-AGACCGAGGCTTGTGACAGTAGGATCGATAGCACGCAGGGGGGATCGGGT
65 TCTAAGATCGAACCGA-ACCGAGGGTTGCGATAGTAGGATCGACAGCACGCA-GGGGGATCGGGT
** * *
34784524 AAATCCCCGACTTGCGGATTCTGCCTCTCTGACCGACTGAGTGCCCGTACGCCCGTTTCGTGGGT
128 CGATCCCCG-CTTGCGGATTCTGCCTCTCCGACCG-CTGAGTGCCCGTACGCCCGTTTCATGGGT
*
34784589 TGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CTAGACCGAGGGTTGTGGTAGCG
191 TGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTC-GGACCGAGGGTTGTGGTAGCG
** * * * * *
34784653 GGATTGACAGCACACGGAAGGGGACCGAACTGAT-CCCTGACTTGCGCATTATGCCTCTCCGAT-
255 GGACCGACAGCACGCAGAGGGGGACCGAGCTGATCCCCAG-CTTGCGCATTATGCCTCTCCGATA
34784716 ---T--------G---G--C-----------T--C--AGGCATACGGAGTTCATTCCATGTCTAA
319 GACTAAGCACCCGAACGCTCGTTTTATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* * * * * * * * * *
34784750 GCCCCAGTCGGACCGAGGGTTGTGGCAGCAGGAGCGGCAGCGGGATC-G-A-CAACAT-GCA-GG
384 GCCCCAGCCAGATCGAGCGTTGTGGTAGCAGGACCGACAACAGGATCAGCAGC-ACGTAG-AGGG
* ** * * ** * * * ** *
34784810 GG--T----TGATCCCCGGCTTTCGCATTATGCCTCTTCGATCAGCCTCTC-CAGTCAACTGAGT
447 GGACTGGGCTAATCCCTAGCTTGCGCATTATGCCTCTCCGGCCGGCCTCTCTGA-CCGGCTGAGC
* * *
34784868 GCCCGTACGCTCA
511 GCCTGTACACTCG
** * * * * * *
34784881 TTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCGAGTCTAAGCATACAGAGTTCATTCCTAG
1 TTTTGTGGGTTAACTTAGGCATACG-AGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAA
* * * * * ** ** *
34784946 TATAAGATCAAACCGGACTGGGGGTTGCGGCAGTAGGATCGACAGCACATAGGAGGGATCAGGTC
65 TCTAAGATCGAACCGAACCGAGGGTTGCGATAGTAGGATCGACAGCACGCAGG-GGGATCGGGTC
* * * * * * * *
34785011 GATCCCCGGCTTACGCATTCTACCTTTCCGATCGGCTGAGCT-CCCGCATGCCCGTTTCGTGGGT
129 GATCCCC-GCTTGCGGATTCTGCCTCTCCGA-CCGCTGAG-TGCCCGTACGCCCGTTTCATGGGT
* * * *
34785075 TGGCTTATGCCTAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCGA
191 TGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGTAGCGG
* ** * * * * *
34785140 GATCGGTAGCACGCAGAGGGGGATC-AGGCTGATCCCCGGCTTGTGCATTATGCCCCTTCGACT-
256 GACCGACAGCACGCAGAGGGGGACCGA-GCTGATCCCCAGCTTGCGCATTATGCCTCTCCGA-TA
* * ** * ** * * *
34785203 GGCTCAGTGCCCGTACGCTCGTTTCGTGGGTTGACTTATGCATACGAAGTTCATTCC
319 GACTAAGCACCCGAACGCTCGTTTTATGGGTTGGCTTAGGCATACGGAGTTCATTCC
34785260 CAGGGTAAGA
Statistics
Matches: 1139, Mismatches: 195, Indels: 124
0.78 0.13 0.09
Matches are distributed among these distances:
485 4 0.00
486 304 0.27
487 10 0.01
490 2 0.00
492 6 0.01
493 5 0.00
494 1 0.00
495 67 0.06
497 1 0.00
498 1 0.00
499 1 0.00
501 1 0.00
503 1 0.00
512 1 0.00
514 1 0.00
515 1 0.00
516 1 0.00
518 18 0.02
523 1 0.00
525 3 0.00
526 178 0.16
527 425 0.37
528 106 0.09
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (523 bp):
TTTTGTGGGTTAACTTAGGCATACGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAAT
CTAAGATCGAACCGAACCGAGGGTTGCGATAGTAGGATCGACAGCACGCAGGGGGATCGGGTCGA
TCCCCGCTTGCGGATTCTGCCTCTCCGACCGCTGAGTGCCCGTACGCCCGTTTCATGGGTTGGCT
TAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGTAGCGGGACCG
ACAGCACGCAGAGGGGGACCGAGCTGATCCCCAGCTTGCGCATTATGCCTCTCCGATAGACTAAG
CACCCGAACGCTCGTTTTATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAG
CCAGATCGAGCGTTGTGGTAGCAGGACCGACAACAGGATCAGCAGCACGTAGAGGGGGACTGGGC
TAATCCCTAGCTTGCGCATTATGCCTCTCCGGCCGGCCTCTCTGACCGGCTGAGCGCCTGTACAC
TCG
Found at i:34784929 original size:26 final size:26
Alignment explanation
Indices: 34784899--34784951 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
34784889 GTTGACTTAG
*
34784899 GCATAC-GAAGTTCATTCCGAGTCTAA
1 GCATACAG-AGTTCATTCCGAGTATAA
*
34784925 GCATACAGAGTTCATTCCTAGTATAA
1 GCATACAGAGTTCATTCCGAGTATAA
34784951 G
1 G
34784952 ATCAAACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCGAGTATAA
Found at i:34785450 original size:26 final size:26
Alignment explanation
Indices: 34785402--34785452 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
34785392 TGGCTTAGGG
* *
34785402 ATACAGAGTTCATTCCATTTCTAAGC
1 ATACAAAGTTCATTCCATGTCTAAGC
34785428 ATACAAAGTTCATTCCCA-GTCTAAG
1 ATACAAAGTTCATT-CCATGTCTAAG
34785453 ATTTTGAGCC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.33, C:0.24, G:0.12, T:0.31
Consensus pattern (26 bp):
ATACAAAGTTCATTCCATGTCTAAGC
Found at i:34786485 original size:26 final size:26
Alignment explanation
Indices: 34786442--34786494 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
34786432 GTTGGCTTAG
34786442 GCATACGGAGTTCAATCC-ATGTCTAA
1 GCATACGGAGTTCAATCCGA-GTCTAA
34786468 GCATACGGAGTTTC-ATCCGAGTCTAA
1 GCATACGGAG-TTCAATCCGAGTCTAA
34786494 G
1 G
34786495 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCAATCCGAGTCTAA
Found at i:34787215 original size:26 final size:26
Alignment explanation
Indices: 34787179--34787231 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34787169 GTTGACTTAG
*
34787179 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
34787205 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
34787231 G
1 G
34787232 ATCGAATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:34793104 original size:26 final size:26
Alignment explanation
Indices: 34793075--34793124 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
34793065 TCGTGGGTTG
*
34793075 GTTTAGGCATACGGAGTTCATTCCAT
1 GTTTAAGCATACGGAGTTCATTCCAT
*
34793101 GTTTAAGCATATGGAGTTCATTCC
1 GTTTAAGCATACGGAGTTCATTCC
34793125 CAGTCTAAGA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.36
Consensus pattern (26 bp):
GTTTAAGCATACGGAGTTCATTCCAT
Found at i:34793133 original size:26 final size:26
Alignment explanation
Indices: 34793081--34793133 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
34793071 GTTGGTTTAG
*
34793081 GCATACGGAGTTCATTCCATGTTTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
34793107 GCATATGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
34793133 G
1 G
34793134 ATCAGATCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:34794534 original size:26 final size:26
Alignment explanation
Indices: 34794504--34794556 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34794494 GTTGGCTTAG
34794504 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
34794530 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
34794556 G
1 G
34794557 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:34794903 original size:26 final size:26
Alignment explanation
Indices: 34794873--34794925 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34794863 GTTGACTTAG
*
34794873 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
34794899 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
34794925 G
1 G
34794926 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:34795004 original size:356 final size:341
Alignment explanation
Indices: 34794090--34795230 Score: 885
Period size: 356 Copynumber: 3.3 Consensus size: 341
34794080 CACCCGTTCG
* ** ** * * * * *
34794090 ATCCCCGACTTACGCATCGTGCCTCTCTGGTGGGTTGAGTGCCCACACACTCATTTCGTGGGTTG
1 ATCCTCGACTTACGCATTATGCCTCTCCAGTCGGCTCAGTGCCCACACGCTCATTTCATGGGTTG
* * * *
34794155 AGTTAGGCATACGGAGTTCATCCCCAGCCTATGCATA-TAGAGTTCATTCCCAGTCTAAGATCAG
66 ACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGA-AGTTCATTCCCAGTCTAAGATCAG
* ** * * *
34794219 ATCGGATCGAGGGTTACGGCAGCAGGATCGGTAGCATGCAGGGGGGACCGAGCCGATCCCTGGCT
130 ACCGGATCGAGGGTTACGGCAGCAGGATCGACAACACGCAGGGGAGACCG-GCCGATCCC-GGCT
* * * * * *
34794284 TACACATTCTGCCTCTTCAGCCGACTAAGCACCCACACGCCCGTTTCATGGGTTGACTTAGGCAT
193 TACGCATTCTACCTCTTCGGCCGACTAAGCACCCACACGACCATTTCATGGGTTGACTGAGGCAT
* * * *** * * *
34794349 AGGGAGTTCATTCCATGTCTAAGCCCCAGTTGGACCGAGGGTTGTGGCAGCGGGACCGGTAGCAC
258 ACGAAGTTCATTCCATGTCTAAACCCCAACCGGACCGAGGGTTGTGGCAGCAGGACCGGCAGAAC
34794414 ACAGAGGGGGAGCAGGCCA
323 ACAGAGGGGGAGCAGGCCA
*
34794433 ATCCTCGGCTTACGCATTATGCCTCTCCAGTCGGCTCAGTGCCCACACGCTCATTTCATGGGTTG
1 ATCCTCGACTTACGCATTATGCCTCTCCAGTCGGCTCAGTGCCCACACGCTCATTTCATGGGTTG
* * * *
34794498 GCTTAGGCATACAGAGTTCAT-TCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG
66 ACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAG
* ** * * *
34794562 ACCGGA-CTAAAAGTTGCGGCAGCAGGACCAGCAGCAGGATCAGCAGCTCGCAGGGGGTGATCCG
130 ACCGGATC-GAGGGTTACGGCAGCAGGATC-G-A-C---A--A-CA---CGCA-GGGGAGA-CCG
* * * * ** * **
34794626 GCTGATCCCCGACTTACGCATTCTACCTCTTCGGCC-AGCTGAGCCCCCGTACGATCATTTTGTG
180 GCCGAT-CCCGGCTTACGCATTCTACCTCTTCGGCCGA-CTAAGCACCCACACGACCATTTCATG
* *
34794690 GGTTGACTGAGGCATACGAAGTTCATTCCTTGTCTAAACCCCAACCGGATCGAGGGTTGTGGCAG
243 GGTTGACTGAGGCATACGAAGTTCATTCCATGTCTAAACCCCAACCGGACCGAGGGTTGTGGCAG
* * * * **
34794755 CAGGACTGGCAGAATACAGAGGGGGATCGGGCTG
308 CAGGACCGGCAGAACACAGAGGGGGAGCAGGCCA
* * * *
34794789 ATCC-CTGACTTATGCATTATGCCTCTTC-GATCGGCCCCTTCGGCCAGCTGAGCGCCCGCATGC
1 ATCCTC-GACTTACGCATTATGCCTCTCCAG-TCGG---C-T----CAG-T----GCCCACACGC
*
34794852 TCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCC
51 TCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCC
* *
34794917 CAGTCTAAGATCGGACCGGATCGAGGGTTACGGTAGCAGGATCGACAACACGCAGGGGAGACCAG
116 CAGTCTAAGATCAGACCGGATCGAGGGTTACGGCAGCAGGATCGACAACACGCAGGGGAGACC-G
* * * * * * *
34794982 GCCGATCCTCGGCTTGCGCATTCTACCTCTTCGGTCGATTGAGCACCCTCATGCCCATTTCATGG
180 GCCGATCC-CGGCTTACGCATTCTACCTCTTCGGCCGACTAAGCACCCACACGACCATTTCATGG
* * * * * * * * * *
34795047 GTTTG-CTTAGGCATAGGGAGTTCATTCCAAGTCTAAGCCCCAGCCAGATCGAGGGTTGTGCCAA
244 G-TTGACTGAGGCATACGAAGTTCATTCCATGTCTAAACCCCAACCGGACCGAGGGTTGTGGCAG
* * * * ** * * *
34795111 CGGGACCGACAGCACGCAGAAAGGGA-CTGGGTCG
308 CAGGACCGGCAGAACACAGAGGGGGAGC-AGGCCA
* * * * ** * ** *
34795145 ATCCCCGACTTACGCATTATGCCTCTTCGGCCGGCTCAACGCCCGCACGCTTGTTTCATGGGTTA
1 ATCCTCGACTTACGCATTATGCCTCTCCAGTCGGCTCAGTGCCCACACGCTCATTTCATGGGTTG
* * *
34795210 ACTTATGCATATGAAGTTCAT
66 ACTTAGGCATACGGAGTTCAT
34795231 TTCTAGTCTA
Statistics
Matches: 632, Mismatches: 123, Indels: 86
0.75 0.15 0.10
Matches are distributed among these distances:
342 4 0.01
343 166 0.26
344 1 0.00
348 2 0.00
349 1 0.00
352 3 0.00
353 1 0.00
355 11 0.02
356 312 0.49
357 16 0.03
359 1 0.00
360 3 0.00
361 1 0.00
363 1 0.00
364 3 0.00
365 1 0.00
366 1 0.00
367 1 0.00
368 1 0.00
369 98 0.16
370 4 0.01
ACGTcount: A:0.21, C:0.28, G:0.27, T:0.23
Consensus pattern (341 bp):
ATCCTCGACTTACGCATTATGCCTCTCCAGTCGGCTCAGTGCCCACACGCTCATTTCATGGGTTG
ACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGA
CCGGATCGAGGGTTACGGCAGCAGGATCGACAACACGCAGGGGAGACCGGCCGATCCCGGCTTAC
GCATTCTACCTCTTCGGCCGACTAAGCACCCACACGACCATTTCATGGGTTGACTGAGGCATACG
AAGTTCATTCCATGTCTAAACCCCAACCGGACCGAGGGTTGTGGCAGCAGGACCGGCAGAACACA
GAGGGGGAGCAGGCCA
Found at i:34795827 original size:26 final size:26
Alignment explanation
Indices: 34795786--34795838 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34795776 CCAGTTTGAT
34795786 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
34795812 CTTAGACTAGGG-ATGAACTTCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
34795838 C
1 C
34795839 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34796264 original size:159 final size:158
Alignment explanation
Indices: 34795992--34796299 Score: 465
Period size: 159 Copynumber: 1.9 Consensus size: 158
34795982 GGTCCGACAG
* *
34795992 GGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTA
1 GGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTA
* * * *
34796057 AGCCGATCGGGGAGGCATAATGCGCAAGCCAGGCATCGGCCCGGTCCCCCTCTGCGTGCTGTCGA
66 AGCCGATCGGAGAGGCAGAATGCGCAAGCCAGGCATCGGCCCGATCCCCC-CTGCGTGCTGCCGA
34796122 T-CTCGCTACCACAACCCTCGGTTTGGCTA
130 TCCT-GCTACCACAACCCTCGGTTTGGCTA
* * *
34796151 GGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGTGTGCGGGCGCTC
1 GGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTA
* * * *
34796216 AGCCGGTTGGAGAGGTAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCCCTGCGTGCTGCCGAT
66 AGCCGATCGGAGAGGCAGAATGCGCAAGCCAGGCATCGGCCCGATCCCCCCTGCGTGCTGCCGAT
*
34796281 CCTGCTGCCACAACCCTCG
131 CCTGCTACCACAACCCTCG
34796300 ATCCGATCCA
Statistics
Matches: 134, Mismatches: 14, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
158 29 0.22
159 105 0.78
ACGTcount: A:0.21, C:0.31, G:0.30, T:0.18
Consensus pattern (158 bp):
GGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTA
AGCCGATCGGAGAGGCAGAATGCGCAAGCCAGGCATCGGCCCGATCCCCCCTGCGTGCTGCCGAT
CCTGCTACCACAACCCTCGGTTTGGCTA
Found at i:34796363 original size:26 final size:26
Alignment explanation
Indices: 34796312--34796364 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
34796302 CCGATCCAAT
**
34796312 CTTAGACCGGGAATGAACTCTGTATG
1 CTTAGACCGGGAATGAACTCCATATG
* *
34796338 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACCGGGAATGAACTCCATATG
34796364 C
1 C
34796365 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACCGGGAATGAACTCCATATG
Found at i:34797072 original size:26 final size:26
Alignment explanation
Indices: 34797034--34797112 Score: 115
Period size: 26 Copynumber: 3.0 Consensus size: 26
34797024 GGCTCAAACT
* *
34797034 CTTAGAC-TGGGAATGAACCCCATATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
34797060 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCCGTATG
34797086 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
34797112 C
1 C
34797113 CTAAGCCAAC
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
26 47 0.98
27 1 0.02
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:34797385 original size:159 final size:158
Alignment explanation
Indices: 34797095--34797395 Score: 338
Period size: 159 Copynumber: 1.9 Consensus size: 158
34797085 GCTTAGACAT
* * * * * **
34797095 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGTGCTCAGCAAGCCGGAG
1 GGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCCTGCGAGCACTCAGCAAGCCGGAG
* * * **
34797160 GGATAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCCTGAGTGTTGTCCATCTTGCTGCCAC
66 GCATA-AATGCGCAAGCCGAGGATCGGCCCGGTCCCCCCCTGAGTGCTGTCCATCCCGCTGCCAC
34797225 AA-CCTTCGGTCCGATCCAATCTTAGATTG
130 AACCCTT-GGTCCGATCCAATCTTAGATTG
* * * *
34797254 GGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGCCTGCGAGCACTGAGCAGGCCGAAG
1 GGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCCTGCGAGCACTCAGCAAGCCG--G
* * * * * *
34797319 AGGCAT-AATGCGTAAGCCGAGGATTGGCCCGGTCCCCCTCTGCGTGCTG-CCGGTCCCGCTGTC
64 AGGCATAAATGCGCAAGCCGAGGATCGGCCCGGTCCCCCCCTGAGTGCTGTCC-ATCCCGCTGCC
34797382 ACAACCCTTGGTCC
128 ACAACCCTTGGTCC
34797396 AGCTGGGGCT
Statistics
Matches: 116, Mismatches: 22, Indels: 8
0.79 0.15 0.05
Matches are distributed among these distances:
158 2 0.02
159 104 0.90
160 4 0.03
161 6 0.05
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.19
Consensus pattern (158 bp):
GGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCCTGCGAGCACTCAGCAAGCCGGAG
GCATAAATGCGCAAGCCGAGGATCGGCCCGGTCCCCCCCTGAGTGCTGTCCATCCCGCTGCCACA
ACCCTTGGTCCGATCCAATCTTAGATTG
Found at i:34797591 original size:26 final size:26
Alignment explanation
Indices: 34797562--34797617 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 26
34797552 CTAGTTCGAT
*
34797562 CTTAGACTAGGAATGAACTCTATATG
1 CTTAGACTAGGAATGAACTCCATATG
* * *
34797588 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
34797614 CTTA
1 CTTA
34797618 AGTCAACCCA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:34798370 original size:179 final size:179
Alignment explanation
Indices: 34798075--34798417 Score: 497
Period size: 179 Copynumber: 1.9 Consensus size: 179
34798065 CCCTGCGTGT
* * * ** *
34798075 TGTCGATCCTGCTGTCGTAACCCTCGGTCCGGTTTGATCTTAGACTAGGAATGAACTTCGTATGC
1 TGTCAATCCTGCTGTCGCAACCATCGGTCCGGTCCGATCTTAGACTAGGAATGAACTACGTATGC
* * * * * *
34798140 TTAAGTCAACCCATGAAATGAGCGTGTGGGCATTGAGCAGGCCGGAGAGGCATAATGCGCAAGCT
66 ATAAGTCAACCCACGAAATGAGCGTGTGGGCACTGAGCAGGCCGAAGAGGCATAATACGCAAGCC
* * *
34798205 GGGGATCGACCCGATCCCCCTCTGCGTGCTGTCGATCCCCCCTACAAGC
131 AGGGATCAACCCGATCCCCCTCTACGTGCTGTCGATCCCCCCTACAAGC
* * *
34798254 TGTCAATCCTGTTGTCGCAACCATCGGTCTGGTCCGATCTTAGACTGGGAATGAACTACGTATGC
1 TGTCAATCCTGCTGTCGCAACCATCGGTCCGGTCCGATCTTAGACTAGGAATGAACTACGTATGC
* *
34798319 ATGAGTCAACCCACGAAATGAGCGTGTGGGCACTGAGCCGGCCGAAGAGGCATAATACGCAAGCC
66 ATAAGTCAACCCACGAAATGAGCGTGTGGGCACTGAGCAGGCCGAAGAGGCATAATACGCAAGCC
*
34798384 AGGGATCAACCCGGTCCCCCTCTACGTGCTGTCG
131 AGGGATCAACCCGATCCCCCTCTACGTGCTGTCG
34798418 GTCCTGCTCC
Statistics
Matches: 143, Mismatches: 21, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
179 143 1.00
ACGTcount: A:0.22, C:0.28, G:0.27, T:0.22
Consensus pattern (179 bp):
TGTCAATCCTGCTGTCGCAACCATCGGTCCGGTCCGATCTTAGACTAGGAATGAACTACGTATGC
ATAAGTCAACCCACGAAATGAGCGTGTGGGCACTGAGCAGGCCGAAGAGGCATAATACGCAAGCC
AGGGATCAACCCGATCCCCCTCTACGTGCTGTCGATCCCCCCTACAAGC
Found at i:34798645 original size:26 final size:26
Alignment explanation
Indices: 34798609--34798661 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
34798599 CCAGTTCGAT
34798609 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
34798635 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
34798661 C
1 C
34798662 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34799314 original size:26 final size:26
Alignment explanation
Indices: 34799285--34799337 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
34799275 CCGATCTGAT
34799285 CTTAGACT-GGGAATGAACTCTGTATG
1 CTTAGACTAGGG-ATGAACTCTGTATG
34799311 CTTAGACTAGGGATGAACTCTGTATG
1 CTTAGACTAGGGATGAACTCTGTATG
34799337 C
1 C
34799338 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCTGTATG
Found at i:34800823 original size:159 final size:158
Alignment explanation
Indices: 34800529--34801032 Score: 435
Period size: 159 Copynumber: 3.2 Consensus size: 158
34800519 ACTCCGTATG
* ** * * *
34800529 CTTAGAC-ACGGAATGAACTCCGTATGCCTAAGCCAAGACACGAAA-GGAGCGTACGGGCGCTCA
1 CTTAGACTA-GGAATGAACTCCGTATGCATAAGCCAACCCACGAAACAG-GCGTACAGGCACTCA
* * * * * * * ** * *
34800592 GTCGGCC-AGAGAGGCAGAATGCACAAACCGGGGATCAGCTCGATCCCCACCTGCATGTTGTCGA
64 GCCAGCCGA-AGAGGAAGAATACGCAAGCCAGGGATTGGCCCGATCCCC-CCTGCATGCTGTCGA
*
34800656 TCCTGCTGCCACAACCCTCGGTCCGGTCCGAT
127 TCCTGCTGCCACAACCCTCGGTCCGGTTCGAT
* * * * *
34800688 CTTAGACTAGGAATGAACTCTGTATGCATAAGTCAACCCATGAAAC-GAGCGTACAGGCATTTAG
1 CTTAGACTAGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACAG-GCGTACAGGCACTCAG
* * * *
34800752 -CAGGCCGAAGAGGCATAATACGCAAGTCAGGGATTGGCCCGATCCCCCTCTGCATGCTGTCGGT
65 CCA-GCCGAAGAGGAAGAATACGCAAGCCAGGGATTGGCCCGATCCCCC-CTGCATGCTGTCGAT
* * * * **
34800816 CCCGCTGCCACAACCCTCAGTCCGATTGGGG
128 CCTGCTGCCACAACCCTCGGTCCGGTTCGAT
* * * *
34800847 CTTAGA-TATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGCGTGCGGGCACTCAG
1 CTTAGACTA-GGAATGAACTCCGTATGCATAAGCCAACCCACGAAACAGGCGTACAGGCACTCAG
* * * * * ** *
34800911 CCAGCCGGAGAGGAAGAATACGCAAGCCGGGGATTGGCCTGGTCCCCCCCTACGGGCTATCGATC
65 CCAGCCGAAGAGGAAGAATACGCAAGCCAGGGATTGGCCCGAT-CCCCCCTGCATGCTGTCGATC
*** *
34800976 CTGCTGTTGCAACCCACGGTCCGGTTCGAT
129 CTGCTGCCACAACCCTCGGTCCGGTTCGAT
*
34801006 CTTAGACTGGGAATGAACTCCGTATGC
1 CTTAGACTAGGAATGAACTCCGTATGC
34801033 TTAGACTGGG
Statistics
Matches: 273, Mismatches: 62, Indels: 20
0.77 0.17 0.06
Matches are distributed among these distances:
158 4 0.01
159 258 0.95
160 11 0.04
ACGTcount: A:0.25, C:0.30, G:0.27, T:0.18
Consensus pattern (158 bp):
CTTAGACTAGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACAGGCGTACAGGCACTCAGC
CAGCCGAAGAGGAAGAATACGCAAGCCAGGGATTGGCCCGATCCCCCCTGCATGCTGTCGATCCT
GCTGCCACAACCCTCGGTCCGGTTCGAT
Found at i:34801058 original size:26 final size:26
Alignment explanation
Indices: 34801006--34801058 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
34800996 CCGGTTCGAT
**
34801006 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCACATG
* *
34801032 CTTAGACTGGGGATGAACTTCACATG
1 CTTAGACTGGGAATGAACTCCACATG
34801058 C
1 C
34801059 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCACATG
Found at i:34801218 original size:184 final size:184
Alignment explanation
Indices: 34800846--34801400 Score: 611
Period size: 184 Copynumber: 3.0 Consensus size: 184
34800836 TCCGATTGGG
* * * * *
34800846 GCTTAGATATGGAATGAACTC-CCTATGCCTAAGCCAACCCACGAAAC-AGGCGTGCGGGCACTC
1 GCTTAGACATGGAATGAACTCTAC-ATGCCTAAGCCAACCAACGAAACGA-ACGTGCGGGCGCTC
** * * * *
34800909 AGCCAG-CCGGAGAGGAAGAATACGCAAGCCGGGGATTGGCCTGGTCCCCCCCTACGGGCTATCG
64 AG-CAGATAGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGGT-CCCCCCTACGTGCTATCG
* * *
34800973 ATCCTGCTGTTGCAACCCACGGTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTAT
127 ATCCTGCTGCTGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
* * * * * *
34801031 GCTTAGAC-TGGGGATGAACT-TCACATGCCTAAGTCAACCAATGGAA-TAAGCGTGCGGGTGCT
1 GCTTAGACAT-GGAATGAACTCT-ACATGCCTAAGCCAACCAACGAAACGAA-CGTGCGGGCGCT
* * * *
34801093 CAGCTAG-TAGGAGAGGCAGAATGCGTAAGCCCGGGATCGGCCTGGTCCCCCCTACGTGCTGTCA
63 CAGC-AGATAGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGGTCCCCCCTACGTGCTATCG
* * * *
34801157 ATCCTGCTGCCGCAACCCTCGATCTGGTCCGATCATAGACTGGGAATGAACTCCGTAT
127 ATCCTGCTGCTGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
* *
34801215 GCTTAGACATGGAATGAACTCTGCATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCTACATGCCTAAGCCAACCAACGAAACGAACGTGCGGGCGCTCAG
* * * * * * *
34801280 CCGATCGGAGAGGCAAAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCTTGCGTGCTATCGATCC
66 CAGATAGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGGTCCCCCCTACGTGCTATCGATCC
* ** * *
34801345 TGCTGCTACAACCCTCGGTCCATTCCAATCTTAGACTGGGAATGAACTCCATAT
131 TGCTGCTGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
34801399 GC
1 GC
34801401 CTAAGTCAAC
Statistics
Matches: 305, Mismatches: 55, Indels: 21
0.80 0.14 0.06
Matches are distributed among these distances:
183 1 0.00
184 217 0.71
185 86 0.28
186 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCTACATGCCTAAGCCAACCAACGAAACGAACGTGCGGGCGCTCAG
CAGATAGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGGTCCCCCCTACGTGCTATCGATCC
TGCTGCTGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
Done.