Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 383 of 402
Found at i:34801573 original size:160 final size:158
Alignment explanation
Indices: 34801215--34801647 Score: 397
Period size: 160 Copynumber: 2.7 Consensus size: 158
34801205 AACTCCGTAT
* * *
34801215 GCTTAGACATGGAATGAACTCTGC-ATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTC-CCTATGCCTAAGCCAACCCATGAAACGAACATGCGGGCGCTCA
* * * * *
34801279 GCCGATCGGAGAGGCAAAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCTTGCGTGCTATCGATC
65 GCCAACCGGAGAGGCAAAATGCGCAAGCAGGGGATCAGCCCGGTCCCCCTTACATGCTATCGATC
* * *
34801344 CTGCTGCTACAACCCTCGGTCCATTCCAA
130 CCGCTGCCACAACCCTCGGTCCACTCCAA
* * * * * * *
34801373 TCTTAGAC-TGGGAATGAACTCCATATGCCTAAGTCAACCCATGAAATGAGCATGCGGGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAACATGCGGGCGCTCA
* * * ** * * * *
34801437 GCCAACCGGAGAGGCATAATGTGCAAGTAGGGGATTGGTCTGGTCCCCCTTCTACATGTTATCGG
65 GCCAACCGGAGAGGCAAAATGCGCAAGCAGGGGATCAGCCCGGTCCCCC-T-TACATGCTATCGA
***
34801502 TCCCGCTGCCACAACCCTCGGTCCGACT-GGG
128 TCCCGCTGCCACAACCCTCGGTCC-ACTCCAA
* * *
34801533 GCTTAGACATGGAATGAACTCCCTATGTCTAAGCCAACCCATGAAAC-AGGCATGCAGGCGCTCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGA-ACATGCGGGCGCTCA
*** * ** * * * *
34801597 GCCGGTCAGAGAGGCGGAATGCGTAAGCTGGGGATCGGCCCGATCCCCCTT
65 GCCAACCGGAGAGGCAAAATGCGCAAGCAGGGGATCAGCCCGGTCCCCCTT
34801648 GCGTCCTGTC
Statistics
Matches: 216, Mismatches: 52, Indels: 14
0.77 0.18 0.05
Matches are distributed among these distances:
157 1 0.00
158 91 0.42
159 3 0.01
160 118 0.55
161 3 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAACATGCGGGCGCTCAG
CCAACCGGAGAGGCAAAATGCGCAAGCAGGGGATCAGCCCGGTCCCCCTTACATGCTATCGATCC
CGCTGCCACAACCCTCGGTCCACTCCAA
Found at i:34802432 original size:26 final size:26
Alignment explanation
Indices: 34802403--34802455 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34802393 CACTCAAAAT
34802403 CTTAGAC-TGAGAATGAACTCCGTATG
1 CTTAGACATG-GAATGAACTCCGTATG
*
34802429 CTTAGACATGGACTGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
34802455 C
1 C
34802456 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:34803301 original size:26 final size:26
Alignment explanation
Indices: 34803272--34803324 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34803262 CTGATCCGAT
34803272 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCTGTATG
*
34803298 CTTAGACATGGAATGAACTGTGTATG
1 CTTAGACATGGAATGAACTCTGTATG
34803324 C
1 C
34803325 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCTGTATG
Found at i:34803312 original size:184 final size:185
Alignment explanation
Indices: 34803113--34803481 Score: 481
Period size: 184 Copynumber: 2.0 Consensus size: 185
34803103 TCCAGTTGGG
*
34803113 GCTTAGACATGGAATGAACT-TCGTATGCCTAAGCCAACCCATGAAACAAGCGTACGGGCCCTCA
1 GCTTAGACATGGAATGAACTGT-GTATGCCTAAGCCAACCCATGAAACAAGAGTACGGGCCCTCA
* * * **
34803177 GCCGGCCGGAGAGGCAGAATACGCAAGCCAGGGATCAACCCGATCCGCCC-TGGGTGCTACCGAT
65 ACCGGCCGAAGAGGCAGAATACGCAAGCCAGGGATCAACCCGATCCCCCCTTGCCTGCTACCGAT
* * * *
34803241 CTTGCTGTCGCAACCCTCAATCTGATCCGATCTTAGACTGGGAATGAACTCTGTAT
130 CCTGCTGTCACAACCCTCAATCCGATCCGATCTTAGACTGGGAATGAACTCCGTAT
* * **
34803297 GCTTAGACATGGAATGAACTGTGTATGCCTAAGCCAACCCATGAAACGAGAGTGCGGGCGTTCAA
1 GCTTAGACATGGAATGAACTGTGTATGCCTAAGCCAACCCATGAAACAAGAGTACGGGCCCTCAA
* * ** * * **
34803362 CCGGCTGAAGAGGCAGAATGCGCAAGCCAGGGATTGACCCGGTCCCCCCTTGCCTGTTGTCGATC
66 CCGGCCGAAGAGGCAGAATACGCAAGCCAGGGATCAACCCGATCCCCCCTTGCCTGCTACCGATC
* * * *
34803427 CTGCTGTCATAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
131 CTGCTGTCACAACCCTCAATCCGATCCGATCTTAGACTGGGAATGAACTCCGTAT
34803482 CCCTAAGTCA
Statistics
Matches: 157, Mismatches: 26, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
184 99 0.63
185 58 0.37
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.21
Consensus pattern (185 bp):
GCTTAGACATGGAATGAACTGTGTATGCCTAAGCCAACCCATGAAACAAGAGTACGGGCCCTCAA
CCGGCCGAAGAGGCAGAATACGCAAGCCAGGGATCAACCCGATCCCCCCTTGCCTGCTACCGATC
CTGCTGTCACAACCCTCAATCCGATCCGATCTTAGACTGGGAATGAACTCCGTAT
Found at i:34803811 original size:158 final size:161
Alignment explanation
Indices: 34803297--34804181 Score: 703
Period size: 159 Copynumber: 5.6 Consensus size: 161
34803287 AACTCTGTAT
*** * * * * *
34803297 GCTTAGACATGGAATGAACTGTGTATGCCTAAGCCAACCCATGAAACGAGAGTGCGGGCGTTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCAG
* * * ** * * * * * * * *
34803362 CCG-GCTGAAGAGGCAGAATGCGCAAGCCAGGGATTGACCCGGTCCCCC-CTTGCCTGTTGTCGA
66 CCGATC-GGAGAGGCTGAATGCGCAAGCTGGGGATCGACCTGATCCCCCAC-TACGTGCTATCGG
* * * * *
34803425 TCCTGCTGTCATAA-CCCTCAGTCCGGTCT-GA
129 TCCCGCTGCCACAAGCCCTCGGTCCGGTCTGGG
* * * * * * ** *
34803456 TCTTAGAC-TGGGAATGAACTCCGTATCCCTAAGTCAACCCACGAAATGAACGTGCGGGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCA
* * * **
34803520 GCCGACCGGAGAGGCAT-AATGCGCAAGTTGGGGATCGACC-CAGTCCCCCACTACGTGCTGCCG
65 GCCGATCGGAGAGGC-TGAATGCGCAAGCTGGGGATCGACCTGA-TCCCCCACTACGTGCTATCG
* * **
34803583 GTCTCGCTGCCACAA-TCCTCTTTCCGG-CTGGG
128 GTCCCGCTGCCACAAGCCCTCGGTCCGGTCTGGG
*
34803615 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCAG
* * * * * * *
34803680 TCGATCGGAGAGGCTGAATGTGCATGCCGGGGATCGACCTGATCCCTC-CTGCGTGCTATCGATC
66 CCGATCGGAGAGGCTGAATGCGCAAGCTGGGGATCGACCTGATCCCCCACTACGTGCTATCGGTC
* * ** * * **
34803744 CTGCTACTGCAA-CCCTTGATCCGGTCTGAT
131 CCGCTGCCACAAGCCCTCGGTCCGGTCTGGG
* * * * *
34803774 G-TTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCA
* * * * * * *
34803837 GCCGA-CTGGAAAGGCAT-AATGCGCGAGCTGGGGATCGGCCGGGTCCTCCTCTA-GTGCTATCG
65 GCCGATC-GGAGAGGC-TGAATGCGCAAGCTGGGGATCGACCTGATCCCCCACTACGTGCTATCG
* *
34803899 GTCCCGCTGCCA-TAGCCCTCGGTCTGGT-TGGG
128 GTCCCGCTGCCACAAGCCCTCGGTCCGGTCTGGG
** * ** *
34803931 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAAACACGAAACGGGCGTGCACGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCAG
* ** * * * * * * *
34803996 CCGGTCGGAGAGATTGAATGCGTAAGTTGGGGATCGGCCTGGTCCCCCTCTACATGCTGTCGGTC
66 CCGATCGGAGAGGCTGAATGCGCAAGCTGGGGATCGACCTGATCCCCCACTACGTGCTATCGGTC
34804061 CCGCTGCCACAA-CCCTCGGTCCGGT-TGGG
131 CCGCTGCCACAAGCCCTCGGTCCGGTCTGGG
34804090 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCAG
* * * * *
34804155 TCGGTCAGAGAGGCAGAATGCGTAAGC
66 CCGATCGGAGAGGCTGAATGCGCAAGC
34804182 CGAGGATTGT
Statistics
Matches: 572, Mismatches: 133, Indels: 42
0.77 0.18 0.06
Matches are distributed among these distances:
157 7 0.01
158 234 0.41
159 326 0.57
160 5 0.01
ACGTcount: A:0.22, C:0.29, G:0.29, T:0.20
Consensus pattern (161 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCAG
CCGATCGGAGAGGCTGAATGCGCAAGCTGGGGATCGACCTGATCCCCCACTACGTGCTATCGGTC
CCGCTGCCACAAGCCCTCGGTCCGGTCTGGG
Found at i:34803873 original size:317 final size:313
Alignment explanation
Indices: 34803297--34804151 Score: 924
Period size: 317 Copynumber: 2.7 Consensus size: 313
34803287 AACTCTGTAT
*** * * * *
34803297 GCTTAGACATGGAATGAACTGTGTATGCCTAAGCCAACCCATGAAACGAGAGTGCGGGCGTTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAG
* * * * * * * *
34803362 CCGGCTGAAGAGGCAGAATGCGCAAGCCAGGGATTGACCCGGTCCCCCCTTGCCTGTTGTCGATC
66 CCGTC-GGAGAGGCTGAATGCGCAAGCCGGGGATCGACCTGGTCCCCCC-TGCATGCTGTCGATC
* * * *
34803427 CTGCTGTCATAACCC-TCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATCCCTAAGTC
129 CTGCTCTC--AACCCTTGA-TCCGGTCTGATGTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * *
34803491 AACCCACGAAATGAACGTGCGGGTGCTGAGCCGACCGGAGAGGCATAATGCGCAAGTTGGGGATC
191 AACCCATGAAATGAGCGTGCGGGTGCTGAGCCGACCGGAAAGGCATAATGCGCAAGCTGGGGATC
* * * **
34803556 GACCCAGTCCCCCACTACGTGCTGCCGGTCTCGCTGCCACAATCCTCTTTCCGGCTGGG
256 GACCCAGTCCCCCACTA-GTGCTACCGGTCCCGCTGCCACAACCCTCGGTCCGGCTGGG
34803615 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAG
* * * * * * *
34803680 TCGATCGGAGAGGCTGAATGTGCATGCCGGGGATCGACCTGATCCCTCCTGCGTGCTATCGATCC
66 CCG-TCGGAGAGGCTGAATGCGCAAGCCGGGGATCGACCTGGTCCCCCCTGCATGCTGTCGATCC
34803745 TGCTACTGCAACCCTTGATCCGGTCTGATGTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
130 TGCT-CT-CAACCCTTGATCCGGTCTGATGTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * *
34803810 CCCATGAAATGAGCGTGCGGGTGCTGAGCCGACTGGAAAGGCATAATGCGCGAGCTGGGGATCGG
193 CCCATGAAATGAGCGTGCGGGTGCTGAGCCGACCGGAAAGGCATAATGCGCAAGCTGGGGATCGA
** * * * * * * *
34803875 CCGGGTCCTCCTCTAGTGCTATCGGTCCCGCTGCCATAGCCCTCGGTCTGGTTGGG
258 CCCAGTCCCCCACTAGTGCTACCGGTCCCGCTGCCACAACCCTCGGTCCGGCTGGG
** * **
34803931 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAAACACGAAACGGGCGTGCACGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAG
** * ** * * *
34803996 CCGGTCGGAGAGATTGAATGCGTAAGTTGGGGATCGGCCTGGTCCCCCTCTACATGCTGTCGGTC
66 CC-GTCGGAGAGGCTGAATGCGCAAGCCGGGGATCGACCTGGTCCCCC-CTGCATGCTGTCGATC
* * * * ** * *
34804061 CCGCTGCCACAACCCTCGGTCCGGT-TGGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGC
129 CTGCT--CTCAACCCTTGATCCGGTCTGATG-TTAGAC-TGGGAATGAACTCCGTATGCCTAAGT
* *
34804124 CAACCCATGAAACGGGCGTGCGGGTGCT
190 CAACCCATGAAATGAGCGTGCGGGTGCT
34804152 CAGTCGGTCA
Statistics
Matches: 451, Mismatches: 77, Indels: 19
0.82 0.14 0.03
Matches are distributed among these distances:
316 129 0.29
317 221 0.49
318 99 0.22
319 2 0.00
ACGTcount: A:0.21, C:0.29, G:0.29, T:0.21
Consensus pattern (313 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAG
CCGTCGGAGAGGCTGAATGCGCAAGCCGGGGATCGACCTGGTCCCCCCTGCATGCTGTCGATCCT
GCTCTCAACCCTTGATCCGGTCTGATGTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
ATGAAATGAGCGTGCGGGTGCTGAGCCGACCGGAAAGGCATAATGCGCAAGCTGGGGATCGACCC
AGTCCCCCACTAGTGCTACCGGTCCCGCTGCCACAACCCTCGGTCCGGCTGGG
Found at i:34804284 original size:26 final size:26
Alignment explanation
Indices: 34804248--34804300 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34804238 CCGATCCGAT
*
34804248 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
34804274 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
34804300 C
1 C
34804301 GTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34804622 original size:26 final size:26
Alignment explanation
Indices: 34804593--34804642 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
34804583 CCGATCCAAT
34804593 CTTAGACTGGGAATGAACTCCGTACG
1 CTTAGACTGGGAATGAACTCCGTACG
* *
34804619 CTTAGATTGGGGATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
34804643 TGCCTAAGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTACG
Found at i:34804695 original size:345 final size:345
Alignment explanation
Indices: 34804051--34804824 Score: 1003
Period size: 345 Copynumber: 2.2 Consensus size: 345
34804041 CCCTCTACAT
* * * * **
34804051 GCTGTCGGTCCCGCTGCCACAACCCTCGGTCCGGTTGGGGCTTAGACATGGAATGAACTCCCTAT
1 GCTGTCGGTCCTGCTGCCACAACCCTCGGTCCAGCTAGGGCTTAGACATGGAATGAACTCTGTAT
** * * ** *
34804116 GCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCAGTCGGTCAGAGAGGCAGAATGCGTAAG
66 GCCTAAGCCAACCCATGAAACGAACGTGCGAGTGCTCAGCCGACCAGAGAGGCAGAATGCGCAAG
* * * ** * * * *
34804181 CCGAGGATTGTACTGGTCCCCCTGCGTGCTGCTGATCGTACTGCCATAAGCCTCGATCCGATCCG
131 CCGAGGATCGTACTGATCCCCCTACGTGCTGCCAATCCTACTACCACAAGCCTCGATCCGATCCA
* * *
34804246 ATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCGTAAGTCAAC
196 ATCTTAGACTGGGAATGAACTCCGTACGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAAC
* * * * *
34804311 CCATGAAACGAGTGTACGAGTGCTCAACCGATCGGAGAGGTCGGTCGGAGAGGCATAATGCGCAA
261 CCATGAAACGAGCGTACGAGTGCTCAACCGATCGGAGAGGCCAGTCGAAGAGGCATAATACGCAA
*
34804376 GCCAGGGATCAGTCGACCCC
326 GCCAGGGATCAGCCGACCCC
* * * * * *
34804396 GCTGTTGGTCCTGCTGCCACAACCCTTGATCCAGCTAGGGCTTTGACGTGGAATGAACTCTGTAC
1 GCTGTCGGTCCTGCTGCCACAACCCTCGGTCCAGCTAGGGCTTAGACATGGAATGAACTCTGTAT
* * * *
34804461 GCCTAAGCCGACCCATGAAACGAACGTGCTAGTGCTCAGCCGACCGGAGAGGTAGAATGCGCAAG
66 GCCTAAGCCAACCCATGAAACGAACGTGCGAGTGCTCAGCCGACCAGAGAGGCAGAATGCGCAAG
* * *
34804526 CC-AGGGATCG-GCTCGATCCCCCTACGTGCTGCCAATCCTACTATCGCAAGCCTCGATCCGATC
131 CCGA-GGATCGTACT-GATCCCCCTACGTGCTGCCAATCCTACTACCACAAGCCTCGATCCGATC
*
34804589 CAATCTTAGACTGGGAATGAACTCCGTACGCTTAGATTGGGGATGAACTCCGTATGCCTAAGTCA
194 CAATCTTAGACTGGGAATGAACTCCGTACGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCA
* * * *
34804654 ACCCATGAAACGAGCGTACGGGTGCTCAGCCGATTGGAGAGGCCAGTCGAAGAGGCATAATACGT
259 ACCCATGAAACGAGCGTACGAGTGCTCAACCGATCGGAGAGGCCAGTCGAAGAGGCATAATACGC
* * *
34804719 AAGCCGGGGATTAGCCGATCCC
324 AAGCCAGGGATCAGCCGACCCC
* * * *
34804741 ACTGTCGATCCTGCTGCCACAACCCTCGGTCCAGCTAGAGCTTAGACATGCAATGAACTCTGTAT
1 GCTGTCGGTCCTGCTGCCACAACCCTCGGTCCAGCTAGGGCTTAGACATGGAATGAACTCTGTAT
*
34804806 GCATAAGCCAACCCATGAA
66 GCCTAAGCCAACCCATGAA
34804825 CCGAGCCATG
Statistics
Matches: 363, Mismatches: 64, Indels: 4
0.84 0.15 0.01
Matches are distributed among these distances:
344 3 0.01
345 360 0.99
ACGTcount: A:0.24, C:0.28, G:0.28, T:0.20
Consensus pattern (345 bp):
GCTGTCGGTCCTGCTGCCACAACCCTCGGTCCAGCTAGGGCTTAGACATGGAATGAACTCTGTAT
GCCTAAGCCAACCCATGAAACGAACGTGCGAGTGCTCAGCCGACCAGAGAGGCAGAATGCGCAAG
CCGAGGATCGTACTGATCCCCCTACGTGCTGCCAATCCTACTACCACAAGCCTCGATCCGATCCA
ATCTTAGACTGGGAATGAACTCCGTACGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAAC
CCATGAAACGAGCGTACGAGTGCTCAACCGATCGGAGAGGCCAGTCGAAGAGGCATAATACGCAA
GCCAGGGATCAGCCGACCCC
Found at i:34805165 original size:26 final size:26
Alignment explanation
Indices: 34805129--34805181 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34805119 CTCGTTTGAT
*
34805129 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
34805155 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
34805181 C
1 C
34805182 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34805886 original size:26 final size:26
Alignment explanation
Indices: 34805847--34805899 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
34805837 GGCTCAAAAT
* * *
34805847 CTTAGACTTTGAATGGACTCCATATG
1 CTTAGACATGGAATGAACTCCATATG
*
34805873 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCATATG
34805899 C
1 C
34805900 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:34806245 original size:159 final size:156
Alignment explanation
Indices: 34805872--34806372 Score: 405
Period size: 156 Copynumber: 3.2 Consensus size: 156
34805862 GACTCCATAT
* * *
34805872 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
** * * * * *
34805937 CTGGCTGGACAGGCAGAATGCGCAAGCTGAGGATCAACCCGGTCCCCCTGCATGCTGTCGATCCT
66 CCAGCCGAACAGGCAGAATGCGCAAGCCGAAGATCAACCCGGTCCCCCTGCATGCTATCGATCCT
* **
34806002 GCTACTGCAACCCTCGGTCCAGCTGA
131 ACTACCACAACCCTCGGTCCAGCTGA
* * * * * * * * *
34806028 TCTTACACTTGGAATGAACTTCATATGCATAAGTCAACCCATGAAACGAGCGTACGGGCGTTGAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
** * * * *
34806093 CCAGCCGAAGTGGCATAATGCGCAAGCCGAAGATCAGCCCGGTCCCCTTCTGCGTGCTATCGGTC
66 CCAGCCGAACAGGCAGAATGCGCAAGCCGAAGATCAACCCGGTCCCC--CTGCATGCTATCGATC
* * *
34806158 CTACTGCCACAACCCTCTGTCC-GACTGGG
129 CTACTACCACAACCCTCGGTCCAG-CT-GA
* * * *
34806187 GCTTAGAGATGGAATGAACTCCCTATGCCTAAGCCAAACCATGAAAC-AGGCGTGCGGGCGCTTA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGA-GCGTGCGGGCGCTCA
* * * * * * ** ** * * *
34806251 GCCGGCCGGAGAGGCAGAATGTGTAAGCC-AGGGATCGGCCCAATCCCCCTTGCATACTACCAAT
65 GCCAGCCGAACAGGCAGAATGCGCAAGCCGA-AGATCAACCCGGTCCCCC-TGCATGCTATCGAT
* * * * * *
34806315 CTTGCTATCGCAACCCTCGATCCGATCTGA
128 CCTACTACCACAACCCTCGGTCC-AGCTGA
* *
34806345 TCTTAGACAGGGAATGAACTCCATATGC
1 GCTTAGACATGGAATGAACTCCATATGC
34806373 TTAGATTGGG
Statistics
Matches: 265, Mismatches: 71, Indels: 16
0.75 0.20 0.05
Matches are distributed among these distances:
156 90 0.34
157 2 0.01
158 84 0.32
159 89 0.34
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.20
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
CCAGCCGAACAGGCAGAATGCGCAAGCCGAAGATCAACCCGGTCCCCCTGCATGCTATCGATCCT
ACTACCACAACCCTCGGTCCAGCTGA
Found at i:34807261 original size:26 final size:26
Alignment explanation
Indices: 34807223--34807275 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34807213 GGCTCAAACT
34807223 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
34807249 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
34807275 C
1 C
34807276 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:34807547 original size:159 final size:159
Alignment explanation
Indices: 34807258--34807548 Score: 345
Period size: 159 Copynumber: 1.8 Consensus size: 159
34807248 GCTTAGACAT
* * * *
34807258 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGCTCAGTCGGTCGGAG
1 GGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGAGCGCTAAGTCGGCCGAAG
** * ** ** *
34807323 GGACAGAATGCACAAGTCGGGGATCGGCCTGATCCCCCCCTGAGTGCTGTCGATCTTGCTGCCAC
66 GGACAGAATGCACAACCCGAGGATCGGCCTGATCCCCCCCTGAGTGCTACCGATCCCGCTACCAC
34807388 AACCTTCAGTCCGATCCAATCTTAGATTG
131 AACCTTCAGTCCGATCCAATCTTAGATTG
* * *
34807417 GGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGCGTGCGGGCGCTAAG-CAGGCCGAA
1 GGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGAGCGCTAAGTC-GGCCGAA
* * * * * *
34807481 GAGG-CATAATGCACAACCCGAGGATTGG-CTCGGTCCCCCTCTGCGTGCTACCGGTCCCGCTAC
65 G-GGACAGAATGCACAACCCGAGGATCGGCCT-GATCCCCCCCTGAGTGCTACCGATCCCGCTAC
34807544 CACAA
128 CACAA
34807549 TCCTCCATCC
Statistics
Matches: 108, Mismatches: 21, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
158 3 0.03
159 103 0.95
160 2 0.02
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.18
Consensus pattern (159 bp):
GGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGAGCGCTAAGTCGGCCGAAG
GGACAGAATGCACAACCCGAGGATCGGCCTGATCCCCCCCTGAGTGCTACCGATCCCGCTACCAC
AACCTTCAGTCCGATCCAATCTTAGATTG
Found at i:34807753 original size:26 final size:26
Alignment explanation
Indices: 34807724--34807779 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
34807714 CTGGTTCGAT
*
34807724 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
34807750 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
34807776 CTTA
1 CTTA
34807780 AGTCAACCCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34808804 original size:26 final size:26
Alignment explanation
Indices: 34808768--34808820 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34808758 CCAGTTCAAT
34808768 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
34808794 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
34808820 C
1 C
34808821 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34809988 original size:26 final size:26
Alignment explanation
Indices: 34809945--34809997 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
34809935 CTGGTCTGAT
*
34809945 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAACGAACTCCATATG
* * *
34809971 CTTAGACTGGGGACGAACTCCGTATG
1 CTTAGACTAGGAACGAACTCCATATG
34809997 C
1 C
34809998 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTAGGAACGAACTCCATATG
Found at i:34813295 original size:26 final size:26
Alignment explanation
Indices: 34813265--34813317 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34813255 GTTGACTTAG
34813265 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
34813291 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
34813317 G
1 G
34813318 ATCTGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:34813669 original size:26 final size:26
Alignment explanation
Indices: 34813633--34813685 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34813623 GTTGACTTAG
34813633 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
34813659 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
34813685 G
1 G
34813686 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:34813901 original size:368 final size:368
Alignment explanation
Indices: 34813254--34813950 Score: 966
Period size: 368 Copynumber: 1.9 Consensus size: 368
34813244 TCATTTCATG
*
34813254 GGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGA
1 GGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
* * * ** *
34813319 TCTGACCAGACCGAGGGTTGCGACAGCAGGATCAATAGCACGTAGGGGGGATCGGGCCAATCCCC
66 TCGGACCAGACCGAGGGTTGCGACAGCAGGATCAACAACACACAGGGGGGACCGGGCCAATCCCC
* * * * * **
34813384 GGCTTGCGCATTCTGCCTCTCCGATCGACTGAGCGCCTGCACGCTCGTTTCGTGGGTTGGCCTAG
131 GGCTTGCGCATTATGCCTCTCCGATCGACTCAACGCCCGCACGCTCGTTTCATGGGTTAACCTAG
* *** **
34813449 GCATACAGAGTTCATTCCATGTCTAAGCCCCAACTGGATCGAGGGTTGTGGCAGCAGGACCGGTA
196 GCATACAGAGTTCATTCCATATCTAAGCCCCAACCAAATCGAGGGTTGTGGCAGCAGGACCGACA
* * * * *
34813514 GCAGGATCGATAGCACGCAGAGGGGGACCGGGCTGATCCCCGGCTTGCGCATCATGCCTCTCCGA
261 GCAGGATCGACAACACGCAGAGGGGGACCAGGCTAATCCCCGGCTTACGCATCATGCCTCTCCGA
34813579 CCGGCCTCTCCGGTCGGCTGAGTGCCCGTATGCTTGTTTCCTA
326 CCGGCCTCTCCGGTCGGCTGAGTGCCCGTATGCTTGTTTCCTA
*
34813622 GGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGA
1 GGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
** ** * * *
34813687 TCGGACTGGACCGAGGGTTGCGACAGCAGGATCGGCAACATACAGGGGGGACCGGGCCGATCCCT
66 TCGGACCAGACCGAGGGTTGCGACAGCAGGATCAACAACACACAGGGGGGACCGGGCCAATCCCC
* * * * *
34813752 GGCTTGCGTATTATGCCTGTCCGGTCCG-CTCAACGCCCGCACGCTTGTTTCATGGGTTAACTTA
131 GGCTTGCGCATTATGCCTCTCCGAT-CGACTCAACGCCCGCACGCTCGTTTCATGGGTTAACCTA
* * * *
34813816 GGCATACGGAGTTCATTCCATATCTAAGCCCCAGCCAAATCGAGGGTTGTGGCAGTAGGACTGAC
195 GGCATACAGAGTTCATTCCATATCTAAGCCCCAACCAAATCGAGGGTTGTGGCAGCAGGACCGAC
* *
34813881 AGC-GAGATCGACAACACGCAGAGGGGGACTAGGCTAATCCCCGGCTTACGCATTATGCCTCTCC
260 AGCAG-GATCGACAACACGCAGAGGGGGACCAGGCTAATCCCCGGCTTACGCATCATGCCTCTCC
34813945 GACCGG
324 GACCGG
34813951 TTGAGTGCCC
Statistics
Matches: 283, Mismatches: 44, Indels: 4
0.85 0.13 0.01
Matches are distributed among these distances:
367 1 0.00
368 280 0.99
369 2 0.01
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.22
Consensus pattern (368 bp):
GGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
TCGGACCAGACCGAGGGTTGCGACAGCAGGATCAACAACACACAGGGGGGACCGGGCCAATCCCC
GGCTTGCGCATTATGCCTCTCCGATCGACTCAACGCCCGCACGCTCGTTTCATGGGTTAACCTAG
GCATACAGAGTTCATTCCATATCTAAGCCCCAACCAAATCGAGGGTTGTGGCAGCAGGACCGACA
GCAGGATCGACAACACGCAGAGGGGGACCAGGCTAATCCCCGGCTTACGCATCATGCCTCTCCGA
CCGGCCTCTCCGGTCGGCTGAGTGCCCGTATGCTTGTTTCCTA
Found at i:34814193 original size:158 final size:159
Alignment explanation
Indices: 34813880--34814172 Score: 365
Period size: 158 Copynumber: 1.8 Consensus size: 159
34813870 GTAGGACTGA
* * * * * * *
34813880 CAGCGAGATCGACAACACGCAGAGGGGGACTAGGCTAATCCCCGGCTTACGCATTATGCCTCTCC
1 CAGCAAGATCGACAACACGCAGAGGGGGACCAGGCCAATCACCGACTTACACATTATACCTCTCC
* * * *
34813945 GACCGGTTGAGTGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGT
66 GACCGGCTGAGCGCCCGCACACCCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGT
34814010 CTAAGATCAGACTGCACCGAAGGTTGCAG
131 CTAAGATCAGACTGCACCGAAGGTTGCAG
* * * *
34814039 CAGCAAGATCGACAGCATGCAG-GGGGGACCAGGCCAATCACCGACTTGCACATTCTACCTCTCC
1 CAGCAAGATCGACAACACGCAGAGGGGGACCAGGCCAATCACCGACTTACACATTATACCTCTCC
* * * * * **
34814103 GATCGGCTGCGCGCCCGCACACCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATG
66 GACCGGCTGAGCGCCCGCACACCCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCA-G
34814167 TCTAAG
130 TCTAAG
34814173 CCGTAGCTAG
Statistics
Matches: 111, Mismatches: 22, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
157 3 0.03
158 89 0.80
159 19 0.17
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (159 bp):
CAGCAAGATCGACAACACGCAGAGGGGGACCAGGCCAATCACCGACTTACACATTATACCTCTCC
GACCGGCTGAGCGCCCGCACACCCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGT
CTAAGATCAGACTGCACCGAAGGTTGCAG
Found at i:34814350 original size:159 final size:158
Alignment explanation
Indices: 34813916--34814488 Score: 437
Period size: 159 Copynumber: 3.6 Consensus size: 158
34813906 GGACTAGGCT
* * * * *
34813916 AATCCCCGGCTTACGCATTATGCCTCTCCGACCGGTTGAGTGCCCGCACGCTCATTTCATGGGTT
1 AATCCCCGGCTTACGCATTATGCCTCTCCGACCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTT
* **
34813981 GACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACTGCACCGAA-GGTTGCAGCAGCAA
66 GACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACTGGACC-AAGGGTTGTGGCAGCAA
* * ** *
34814045 GATCGACAGCATGCAGGGGGGACCAGGCC
130 GACCGACAGCACGCAGGACGGACCAAGCC
* * * * * * * * *
34814074 AATCACCGACTTGCACATTCTACCTCTCCGATCGGCTGC-GCGCCCGCACACCCGTTTCGTGGGT
1 AATCCCCGGCTTACGCATTATGCCTCTCCGACCGGCT-CAGCGCCCGCACGCTCGTTTCGTGGGT
* ** * * *
34814138 TGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAG--CCGTAGCTAGACCGAGGGTTGTGGCAG
65 TGACTTAGGCATACAGAGTTCATTCCCA-GTCTAAGATCAG-A-CTGGACCAAGGGTTGTGGCAG
** * *
34814200 CGGGACC-AGCAGCACGCAGAGACGGAGCAAGCT
127 CAAGACCGA-CAGCACGCAG-GACGGACCAAGCC
* * * * *
34814233 GATCCCCGGCTTACGCATTATGCCTTTTCGACCAGCTCAGCGCCCGCACGCTCGTTTTGTGGGTT
1 AATCCCCGGCTTACGCATTATGCCTCTCCGACCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTT
* * * * * *
34814298 GACTTATGCATATAGAGTTCATTCCCAGTGTAAGATCAGACCGGACCAAGGGTTGTGGCAGTAGG
66 GACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACTGGACCAAGGGTTGTGGCAGCAAG
* * * *
34814363 ATCGACAGCATGCAGG--GGAACCGAGTC
131 ACCGACAGCACGCAGGACGG-ACCAAGCC
** * * * ** * * * * * *
34814390 AATCCTTGGCTTGCGCATTCTACCTCTCCGGTCGGCTGAGCACCTGCACACTTGTTTCATGGGTT
1 AATCCCCGGCTTACGCATTATGCCTCTCCGACCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTT
*
34814455 -AGCTTAGGCATACGGAGTTCATT-CCATGTCTAAG
66 GA-CTTAGGCATACAGAGTTCATTCCCA-GTCTAAG
34814489 CATACGCAGT
Statistics
Matches: 315, Mismatches: 85, Indels: 31
0.73 0.20 0.07
Matches are distributed among these distances:
156 8 0.03
157 81 0.26
158 106 0.34
159 113 0.36
160 5 0.02
161 2 0.01
ACGTcount: A:0.21, C:0.28, G:0.27, T:0.23
Consensus pattern (158 bp):
AATCCCCGGCTTACGCATTATGCCTCTCCGACCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTT
GACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACTGGACCAAGGGTTGTGGCAGCAAG
ACCGACAGCACGCAGGACGGACCAAGCC
Found at i:34814368 original size:317 final size:316
Alignment explanation
Indices: 34813798--34814489 Score: 805
Period size: 317 Copynumber: 2.1 Consensus size: 316
34813788 CCGCACGCTT
* * ** * * *
34813798 GTTTCATGGGTTAACTTAGGCATACGGAGTTCATTCCATATCTAAGCCCCAGCCAAATCGAGGGT
1 GTTTCATGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCGTAGCTAGACCGAGGGT
** * * * * *
34813863 TGTGGCAGTAGGACTGACAGCGAGATCGACAACACGCAGAGGGGGACTAGGCTAATCCCCGGCTT
66 TGTGGCAGCGGGAC---CAGC-AG--C-AC-GCA-G-AGACGGAG-C-AAGCTGATCCCCGGCTT
* * * *
34813928 ACGCATTATGCCTCTCCGACCGGTTGAGTGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATA
119 ACGCATTATGCCTCTCCGACCAGCTCAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATA
*
34813993 CAGAGTTCATTCCCAGTCTAAGATCAGACTGCACCGAAGGTTGCAGCAGCAAGATCGACAGCATG
184 CAGAGTTCATTCCCAGTCTAAGATCAGACCGCACCGAAGGTTGCAGCAGCAAGATCGACAGCATG
* * *
34814058 CAGGGGGGACC-AGGCCAATCAC-CGACTTGCACATTCTACCTCTCCGATCGGCTGCGCGCCCGC
249 CA-GGGGAACCGA-GCCAATC-CTCGACTTGCACATTCTACCTCTCCGATCGGCTGAGCACCCGC
34814121 ACACCC
311 ACACCC
* * *
34814127 GTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCGTAGCTAGACCGAGGGT
1 GTTTCATGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCGTAGCTAGACCGAGGGT
34814192 TGTGGCAGCGGGACCAGCAGCACGCAGAGACGGAGCAAGCTGATCCCCGGCTTACGCATTATGCC
66 TGTGGCAGCGGGACCAGCAGCACGCAGAGACGGAGCAAGCTGATCCCCGGCTTACGCATTATGCC
* * * ** * *
34814257 TTTTCGACCAGCTCAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTATGCATATAGAGTTCATTC
131 TCTCCGACCAGCTCAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTC
* * ** * *
34814322 CCAGTGTAAGATCAGACCGGACC-AAGGGTTGTGGCAGTAGGATCGACAGCATGCAGGGGAACCG
196 CCAGTCTAAGATCAGACCGCACCGAA-GGTTGCAGCAGCAAGATCGACAGCATGCAGGGGAACCG
* * * * * * **
34814386 AGTCAATCCTTGGCTTGCGCATTCTACCTCTCCGGTCGGCTGAGCACCTGCACACTT
260 AGCCAATCCTCGACTTGCACATTCTACCTCTCCGATCGGCTGAGCACCCGCACACCC
34814443 GTTTCATGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
1 GTTTCATGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
34814490 ATACGCAGTT
Statistics
Matches: 311, Mismatches: 49, Indels: 19
0.82 0.13 0.05
Matches are distributed among these distances:
315 1 0.00
316 97 0.31
317 127 0.41
318 1 0.00
319 6 0.02
320 1 0.00
321 2 0.01
322 2 0.01
323 1 0.00
325 2 0.01
326 4 0.01
329 67 0.22
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.23
Consensus pattern (316 bp):
GTTTCATGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCGTAGCTAGACCGAGGGT
TGTGGCAGCGGGACCAGCAGCACGCAGAGACGGAGCAAGCTGATCCCCGGCTTACGCATTATGCC
TCTCCGACCAGCTCAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTC
CCAGTCTAAGATCAGACCGCACCGAAGGTTGCAGCAGCAAGATCGACAGCATGCAGGGGAACCGA
GCCAATCCTCGACTTGCACATTCTACCTCTCCGATCGGCTGAGCACCCGCACACCC
Found at i:34814492 original size:26 final size:26
Alignment explanation
Indices: 34814462--34814514 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34814452 GTTAGCTTAG
*
34814462 GCATACGGAGTTCATTC-CATGTCTAA
1 GCATACGCAGTTCATTCTCA-GTCTAA
34814488 GCATACGCAGTTCATTCTCAGTCTAA
1 GCATACGCAGTTCATTCTCAGTCTAA
34814514 G
1 G
34814515 ATTTTGAGGC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGCAGTTCATTCTCAGTCTAA
Found at i:34815573 original size:26 final size:26
Alignment explanation
Indices: 34815544--34815596 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34815534 GTTGACTTAG
*
34815544 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
*
34815570 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
34815596 G
1 G
34815597 ATCAAATCGC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:34815878 original size:159 final size:158
Alignment explanation
Indices: 34815609--34815950 Score: 427
Period size: 159 Copynumber: 2.2 Consensus size: 158
34815599 CAAATCGCAT
* * * * *
34815609 CGAGGGTTGCGATAGCAGGATCGACAGCACGCAGGGGGAACCAGGTCGATCCCCGGCTTGCGCAT
1 CGAGGGTTGTGGTAGCAGGACCGACAGCACGCAGGGGGAACCAGGTCGATCCCCAGCTTACGCAT
* * * * * *
34815674 TCTACCTCTTCGGTCGGCTAAGCGCCTGCACGCCTGTTTCATGGGTTGGCTTAGGCATAGGGAGT
66 TATACCTCTCCGGTCGACTAAGCGCCGGCACGCCTGTTTCATGGGTTAGCTTAGGCATACGGAGT
* *
34815739 TCATTCCATGTCTAAGCCCTAGTCGGAC
131 TCATTCCATGTCTAAGCCCCAGCCGGAC
* * *
34815767 CGAGGGTTGTGGTAGCGGGACCGACAGCATGCAGAGGGGGACCAGG-CTGATCCCCAGCTTACGC
1 CGAGGGTTGTGGTAGCAGGACCGACAGCACGCAG-GGGGAACCAGGTC-GATCCCCAGCTTACGC
* * * * * *
34815831 ATTATGCCTCTCCGGTCGACTCAGTGTCGGTACG-CTCGTTTCGTGGGTTAGCTTAGGCATACGG
64 ATTATACCTCTCCGGTCGACTAAGCGCCGGCACGCCT-GTTTCATGGGTTAGCTTAGGCATACGG
34815895 AGTTCATTCCATGTCTAAGCCCCAGCCGGAC
128 AGTTCATTCCATGTCTAAGCCCCAGCCGGAC
* *
34815926 AGAGGGTTGTGGCAGCAGGACCGAC
1 CGAGGGTTGTGGTAGCAGGACCGAC
34815951 GAACAGGATC
Statistics
Matches: 156, Mismatches: 25, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
158 32 0.21
159 124 0.79
ACGTcount: A:0.19, C:0.27, G:0.32, T:0.22
Consensus pattern (158 bp):
CGAGGGTTGTGGTAGCAGGACCGACAGCACGCAGGGGGAACCAGGTCGATCCCCAGCTTACGCAT
TATACCTCTCCGGTCGACTAAGCGCCGGCACGCCTGTTTCATGGGTTAGCTTAGGCATACGGAGT
TCATTCCATGTCTAAGCCCCAGCCGGAC
Found at i:34816721 original size:498 final size:497
Alignment explanation
Indices: 34815777--34816768 Score: 1201
Period size: 498 Copynumber: 2.0 Consensus size: 497
34815767 CGAGGGTTGT
**
34815777 GGTAGCGGGACCGACAGCATGCAGAGGGGGACCAGGCTGATCCCCAGCTTACGCATTATGCCTCT
1 GGTAGCGGGACCGACAGCACACAGAGGGGGACCAGGCTGATCCCCAGCTTACGCATTATGCCTCT
* *** * *
34815842 CCGGTCGACTCAGTGTCGGTACGCTCGTTTCGTGGGTTAGCTTAGGCATACGGAGTTCATTCCAT
66 CCGGTAGACTCAGCACCCGAACGCTCGTTTCGTGGGTTAGCTTAGGCATACGGAGTTCATTCCAT
* * *
34815907 GTCTAAGCCCCAGCCGGACAGAGGGTTGTGGCAGCAGGACCGACGAACAGGATCTACAGCACGTA
131 GTCTAAGCCCCAGCCGGACAGAGCGTTGTGGCAGCAGGACCGA-GAACAGGATCGACAGCACGCA
* * *
34815972 CAAGGGACTAGGCTGATCCTCGGCTTGCGTACTATTCCTCTCCGATCGGCCTCTCCAATCGGCTG
195 CAAGGGACTAGGCTGATCCTCGGCTTGCGCACTATGCCTCTCCGACCGGCCTCTCCAATCGGCTG
* * * *
34816037 AGCGCTTGTACACTCGTTTCGTGGGTTGACTTACGAATACGGAATTCATCCCCAGTCTAAGCATA
260 AGCGCTCGTACACTCGTTTCATGGGTTAACTTACGAATACGGAATTCATCCCCAGTCCAAGCATA
* * * * * *
34816102 CGAAGTTCATTCCCAATCTGAGATTGGATCGAACCGAAGGTTATGACAGTAGGATCGGTAGCATG
325 CGAAGTTCATTCCCAATCTAAGATCGAATCGAACCGAAGGTTACGACAGTAGGATCGATAGCACG
* * *
34816167 CAAGGGGACCGAGTCGATCCTCGGCTTGCGAATTCTACCTCTCCGACTAGCTGAGTGCCCGTACG
390 CAAGGGGACCGAGTCAATCCTCGACTTGCGAATTCTACCTCTCCGACGAGCTGAGTGCCCGTACG
34816232 CCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATG
455 CCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATG
* ** *
34816275 GGTAGCGGGACCGACAGCACACAGAGGGGGACCGGGCTGATCCCCAGCTTGTGCATTCTGCCTCT
1 GGTAGCGGGACCGACAGCACACAGAGGGGGACCAGGCTGATCCCCAGCTTACGCATTATGCCTCT
** * * * * *
34816340 CCGGTAGGTTGAGCACCCGAACGCTTGTTTTGTGGTTTGGCTTAGGCATACGGAGTTCATTCCAT
66 CCGGTAGACTCAGCACCCGAACGCTCGTTTCGTGGGTTAGCTTAGGCATACGGAGTTCATTCCAT
* * * ** * ** *
34816405 GTCTAAGCCCCAGCTGGACCGAGCGTTGTGGTAGCAGGATTG-GCAGTGGATCGACAGCACGCAG
131 GTCTAAGCCCCAGCCGGACAGAGCGTTGTGGCAGCAGGACCGAGAACAGGATCGACAGCACGCAC
* * * * * *
34816469 AGGGGGACTGGGCTGATCC-CTGGCTTGCGCATTATGCCTCTTCGACCGGCCTCTCCGA-CTGGT
196 A-AGGGACTAGGCTGATCCTC-GGCTTGCGCACTATGCCTCTCCGACCGGCCTCTCCAATC-GGC
* * * * * *
34816532 TGAGTGC-CGTACGCTCGTTTCATGGGTTAACTTAGGCATAC-GAAGTTTATCCCCAGTCCAATC
258 TGAGCGCTCGTACACTCGTTTCATGGGTTAACTTACGAATACGGAA-TTCATCCCCAGTCCAAGC
* *
34816595 ATACGAAGTTCATTCCCAGTCTAAGATCGAATC-AGACCG-AGGCTTGCGACAGTAGGGATCGAT
322 ATACGAAGTTCATTCCCAATCTAAGATCGAATCGA-ACCGAAGG-TTACGACAGTA-GGATCGAT
* * * * * * *
34816658 AGCACGCAGGGGGGACTGGGTCAATCC-CTGACTTGTGCATTCTGCCTCTTCGACCGA-CTGAGT
384 AGCACGCA-AGGGGACCGAGTCAATCCTC-GACTTGCGAATTCTACCTCTCCGA-CGAGCTGAGT
*
34816721 GCCCGTATGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTC
446 GCCCGTACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTC
34816769 TATGTCTAAG
Statistics
Matches: 415, Mismatches: 69, Indels: 20
0.82 0.14 0.04
Matches are distributed among these distances:
495 7 0.02
496 104 0.25
497 69 0.17
498 233 0.56
499 2 0.00
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.24
Consensus pattern (497 bp):
GGTAGCGGGACCGACAGCACACAGAGGGGGACCAGGCTGATCCCCAGCTTACGCATTATGCCTCT
CCGGTAGACTCAGCACCCGAACGCTCGTTTCGTGGGTTAGCTTAGGCATACGGAGTTCATTCCAT
GTCTAAGCCCCAGCCGGACAGAGCGTTGTGGCAGCAGGACCGAGAACAGGATCGACAGCACGCAC
AAGGGACTAGGCTGATCCTCGGCTTGCGCACTATGCCTCTCCGACCGGCCTCTCCAATCGGCTGA
GCGCTCGTACACTCGTTTCATGGGTTAACTTACGAATACGGAATTCATCCCCAGTCCAAGCATAC
GAAGTTCATTCCCAATCTAAGATCGAATCGAACCGAAGGTTACGACAGTAGGATCGATAGCACGC
AAGGGGACCGAGTCAATCCTCGACTTGCGAATTCTACCTCTCCGACGAGCTGAGTGCCCGTACGC
CCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATG
Found at i:34817226 original size:487 final size:490
Alignment explanation
Indices: 34816376--34817272 Score: 1166
Period size: 487 Copynumber: 1.8 Consensus size: 490
34816366 GTTTTGTGGT
* *
34816376 TTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACCGAGCGTTGTGGTAGCA
1 TTGGCTCAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACCGAGCGTTGTGGCAGCA
** * *
34816441 GGATTGGCAGTGGATCGACAGCACGCAGAGGGGGACTGGGCTGATCCCTGGCTTGCGCATTATGC
66 GGAGCGGCAGCGGATCGACAACACGCA-A-GGGGA-T--G-TGATCCCTGGCTTGCGCATTATGC
* *** * **
34816506 CTCTTCGACCGGCCTCTCCGACTGGTTGAGTGCCGTACGCTCGTTTCATGGGTTAACTTAGGCAT
125 CTCTTCGACCAGCCTCTCCGACTAACTGAGTGCCGTACACTAATTTCATGGGTTAACTTAGGCAT
* * * * *
34816571 ACGAAGTTTATCCCCAGTCCAATCATACGAAGTTCATTCCCAGTCTAAGATCGAATCAGACCGAG
190 ACGAAGTTCATCCCCAGTCCAAGCATACGAAGTTCATTCCCAGTATAAGATCAAACCAGACCGAG
* * * *
34816636 GCTTGCGACAGTAGGGATCGATAGCACGCAGGGGGGACTGGGTCAATCCCTGACTTGTGCATTCT
255 GCTTGCGACAGTAGGGATCGACAGCACACAGGAGGGACTGGGTCAATCCCTGACTTATGCATTCT
* * *
34816701 GCCTCTTCGACCGACTGAGTGCCCGTATGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCA
320 ACCTCTTCGACCGACTGAGCGCCCGCATGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCA
*
34816766 TTCTATGTCTAAGCCCCAGCTAGACAGAGGGTTGTGGGGTAGCGGGATCGACAGCACGCGGAAGG
385 TTCCATGTCTAAGCCCCAGCTAGACAGAGGGTTGTGGGGTAGCGGGATCGACAGCACGCGGAAGG
34816831 GGACCGAACCGATCCCTGACTTGCGCATTATGCCTCTCCGA
450 GGACCGAACCGATCCCTGACTTGCGCATTATGCCTCTCCGA
* *
34816872 TTGGCTCAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTTGGACCGAGGGTTGTGGCAGCA
1 TTGGCTCAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACCGAGCGTTGTGGCAGCA
* * *
34816937 GGGAGCGGCAGCGGATCGACAACATGC-A-GGG-T-TGATCCCTGGCTTTCGTATTATGCCTCTT
66 -GGAGCGGCAGCGGATCGACAACACGCAAGGGGATGTGATCCCTGGCTTGCGCATTATGCCTCTT
* * * *
34816998 CGATCAGCCTCTCC-AGTCAACTGAGTGCCCGTACACTAATTTCATGGGTTGACTTAGGCGTACG
130 CGACCAGCCTCTCCGACT-AACTGAGTG-CCGTACACTAATTTCATGGGTTAACTTAGGCATACG
* * * * * *
34817062 AAGTTCATTCCCAGTCTAAGCATTAC-AGAGTTCATTCCTAGTATAAGATCAAACCGGACTGGGG
193 AAGTTCATCCCCAGTCCAAGCA-TACGA-AGTTCATTCCCAGTATAAGATCAAACCAGACCGAGG
* * * * *
34817126 GTTGCGGCAGTA-GGATCGACAGCACATAGGAGGGA-TCGGGTCGATCCCTGGCTTATGCATTCT
256 CTTGCGACAGTAGGGATCGACAGCACACAGGAGGGACT-GGGTCAATCCCTGACTTATGCATTCT
* * *
34817189 ACCT-TTCCGA-CGGCTGAGCGCCCGCATGCCCGTTTCGTGGGTTGGCTTATGCCTAGGGAGTTC
320 ACCTCTT-CGACCGACTGAGCGCCCGCATGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTC
34817252 ATTCCATGTCTAAGCCCCAGC
384 ATTCCATGTCTAAGCCCCAGC
34817273 CGGATCGAGG
Statistics
Matches: 345, Mismatches: 49, Indels: 23
0.83 0.12 0.06
Matches are distributed among these distances:
486 2 0.01
487 116 0.34
488 98 0.28
489 42 0.12
491 1 0.00
493 3 0.01
495 1 0.00
496 61 0.18
497 21 0.06
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (490 bp):
TTGGCTCAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACCGAGCGTTGTGGCAGCA
GGAGCGGCAGCGGATCGACAACACGCAAGGGGATGTGATCCCTGGCTTGCGCATTATGCCTCTTC
GACCAGCCTCTCCGACTAACTGAGTGCCGTACACTAATTTCATGGGTTAACTTAGGCATACGAAG
TTCATCCCCAGTCCAAGCATACGAAGTTCATTCCCAGTATAAGATCAAACCAGACCGAGGCTTGC
GACAGTAGGGATCGACAGCACACAGGAGGGACTGGGTCAATCCCTGACTTATGCATTCTACCTCT
TCGACCGACTGAGCGCCCGCATGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCAT
GTCTAAGCCCCAGCTAGACAGAGGGTTGTGGGGTAGCGGGATCGACAGCACGCGGAAGGGGACCG
AACCGATCCCTGACTTGCGCATTATGCCTCTCCGA
Found at i:34817437 original size:158 final size:157
Alignment explanation
Indices: 34817275--34817571 Score: 338
Period size: 157 Copynumber: 1.9 Consensus size: 157
34817265 GCCCCAGCCG
* *
34817275 GATCGAGGG-TGTGGCAGCGA-GATCGG-TAGCACGCAGAGGGGGA-TCGGG-CTGATCCCCAGC
1 GATCGAGGGTTGCGGCAG-GAGGATCGGACAGCACGC--AGGGGGACT-GGGTC-GATCCCCAGC
* * * *
34817335 TTGTGCATTATGCCCCTT-CGGCTGGCTCAGTGCCCGTACGCTCGTTTCGTGGGTTGACTTATGC
61 TTGCGCATTATG-CCCTTACGGCTGG-TCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
34817399 ATAC-GAAGTTCATTCCCAGGGTAAGATCGGTCCA
124 ATACAG-AGTTCATTCCCAGGGTAAGATCGGTCCA
* * *
34817433 GATCGAGGGTTGCGGCAGTAGGATCGGACAGCACGCAGGGGGACTGGGTCGATCCTCGGCTTGCG
1 GATCGAGGGTTGCGGCAGGAGGATCGGACAGCACGCAGGGGGACTGGGTCGATCCCCAGCTTGCG
* * * * * *
34817498 CATTCTGCCTTTATGGCTGGTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGGATACAGA
66 CATTATGCCCTTACGGCTGGTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGA
34817563 GTTCATTCC
131 GTTCATTCC
34817572 ATTTCTAAGC
Statistics
Matches: 117, Mismatches: 15, Indels: 15
0.80 0.10 0.10
Matches are distributed among these distances:
157 50 0.43
158 45 0.38
159 15 0.13
160 7 0.06
ACGTcount: A:0.16, C:0.25, G:0.34, T:0.24
Consensus pattern (157 bp):
GATCGAGGGTTGCGGCAGGAGGATCGGACAGCACGCAGGGGGACTGGGTCGATCCCCAGCTTGCG
CATTATGCCCTTACGGCTGGTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGA
GTTCATTCCCAGGGTAAGATCGGTCCA
Found at i:34817604 original size:26 final size:26
Alignment explanation
Indices: 34817556--34817605 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
34817546 TGGCTTAGGG
* *
34817556 ATACAGAGTTCATTCCATTTCTAAGC
1 ATACAAAGTTCATTCCATATCTAAGC
34817582 ATACAAAGTTCATTCCCA-ATCTAA
1 ATACAAAGTTCATT-CCATATCTAA
34817606 TATTTTGAGC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
26 18 0.86
27 3 0.14
ACGTcount: A:0.36, C:0.24, G:0.08, T:0.32
Consensus pattern (26 bp):
ATACAAAGTTCATTCCATATCTAAGC
Found at i:34818628 original size:26 final size:26
Alignment explanation
Indices: 34818592--34818644 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
34818582 GTTGGCTTAG
34818592 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
34818618 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
34818644 G
1 G
34818645 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:34819355 original size:26 final size:26
Alignment explanation
Indices: 34819325--34819377 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34819315 GTTGACTTAG
*
34819325 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
34819351 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
34819377 G
1 G
34819378 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:34825208 original size:26 final size:26
Alignment explanation
Indices: 34825179--34825231 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34825169 GTTGGCTTAG
34825179 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
34825205 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
34825231 G
1 G
34825232 ATCAGATTAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:34825579 original size:159 final size:157
Alignment explanation
Indices: 34825283--34825580 Score: 429
Period size: 159 Copynumber: 1.9 Consensus size: 157
34825273 GGATTGGCAG
*
34825283 CACACAGGGGGGTCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCAATCGGCTGAGCGCTTG
1 CACACAGGGGGGTCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCAATCGGCTGAGCGCCTG
** * **
34825348 CACGCTCGTTTTGTGGGTTGACTTATGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCAGAC
66 CACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCCCATCAGAC
*
34825413 AGGGGGTTGCGGTAACAAGATCGACAA
131 AGAGGGTTGCGGTAACAAGATCGACAA
* *
34825440 CACACAAGGGGGGATCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCC
1 CACAC-AGGGGGG-TCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCAATCGGCTGAGCGCC
* *
34825505 TGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAG-TCCCAGTC
64 TGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCA-GTCTAAGATCCCA-TC
* *
34825568 GGACCGAGGGTTG
127 AGACAGAGGGTTG
34825581 TGGGAGCAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
157 5 0.04
158 13 0.10
159 106 0.85
ACGTcount: A:0.18, C:0.28, G:0.30, T:0.24
Consensus pattern (157 bp):
CACACAGGGGGGTCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCAATCGGCTGAGCGCCTG
CACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCCCATCAGAC
AGAGGGTTGCGGTAACAAGATCGACAA
Found at i:34826617 original size:26 final size:26
Alignment explanation
Indices: 34826587--34826639 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
34826577 GTTGGCTTAG
34826587 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
34826613 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
34826639 G
1 G
34826640 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:34826990 original size:26 final size:26
Alignment explanation
Indices: 34826954--34827006 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
34826944 GTTGACTTAG
34826954 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
34826980 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
34827006 G
1 G
34827007 ATCGGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:34827049 original size:355 final size:343
Alignment explanation
Indices: 34826202--34827311 Score: 1045
Period size: 355 Copynumber: 3.2 Consensus size: 343
34826192 TGCCTCTCTG
* * * * * *
34826202 GTCGGCTGAGTGCCCACACACTCGTTTCGTGGGTTGAGTTAGGCATACGGAGTTCATCCCCAGCC
1 GTCGGCTCAGCGCCCACACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTC
** * * *
34826267 TAAGCATATAGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCGGCAGTAGGATCG
66 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTACGACAGTAGGATCG
** * * *
34826332 GTAGCACGCAGGGGGGACCGGGCCGATCC-CTGGCTTACACATTCTGCCTCTTCGGCCGGCTAAG
131 ACAGCACGCAGGGGGGACCGGGCCGATCCTC-GGCTTACGCATTCTACCTCTTCGGCCGGCTGAG
* *
34826396 CACCCACACGCCCGTTTCATGGGTTGACTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG
195 CACCC-TACGCCCATTTCATGGGTTGACTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG
** * * * ** *
34826461 TTGGATCGAGGGTTGTGGCAGCAGGACCGACA-ACACACAGAGGGGGAGCAGGCCAATCCTCGGC
259 CCGGATCGAGGGTTGTGGCAGCAGGACTGACAGA-ACACAGA-GGGGACCGGGCTGATCCTCGAC
**
34826525 TTGCGCATTATGCCTC-TC-CA
322 TTATGCATTATGCCTCTTCGCA
* * *
34826545 GTCGGCTCAGCGCCCACACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGT
1 GTCGGCTCAGCGCCCACACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GT
** ** *
34826609 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACTAAAAGTTACGGTAGCAGGACC
65 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTAC-G-A-CAGTA--
* * * *
34826674 GGCAGCAAGATCAGCAGCACGCAGGGGGTGATCGGGCTGATCCTCGACTTACGCATTCTACCTCT
125 GG-ATC--G---A-CAGCACGCAGGGGG-GACCGGGCCGATCCTCGGCTTACGCATTCTACCTCT
* * * ** * ** *
34826739 CCGGCCAGCTGAGCCCCCGTACGATCATTTCGTGGGTTGACTTAGGCATA-CAAGTTCATTCCTT
182 TCGGCCGGCTGAGCACCC-TACGCCCATTTCATGGGTTGACTTAGGCATAGGGAGTTCATTCCAT
* * *
34826803 GTCTAAACCCCAACCGGATCGAGGGTTGTGGCAGCAGGACTGGCAGAACACAGAGGGGACCGGGC
246 GTCTAAGCCCCAGCCGGATCGAGGGTTGTGGCAGCAGGACTGACAGAACACAGAGGGGACCGGGC
* *
34826868 TGATCCTTGACTTATGCATTATGCCTCTTCGATCG
311 TGATCCTCGACTTATGCATTATGCCTCTTCG--CA
* * * *
34826903 GTCCCTTCGGCCAGCTGAGCGCCCGCACGCTGATTTCGTGTGTTGACTTAGGCATACGGAGTTCA
1 G-----TC-G---GCTCAGCGCCCACACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* * * * *
34826968 TCCCCAGTCTAAGCATACGGAGTTCATCCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGATA
57 TCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTACGACA
* *
34827033 GTAGGATCGACAGCACGCAGGGGGGACCAGGCCGATCCTCGGGTTACGCATTCTACCTCTTCGGC
122 GTAGGATCGACAGCACGCAGGGGGGACCGGGCCGATCCTCGGCTTACGCATTCTACCTCTTCGGC
* * * * *
34827098 CGGTTGAGCGCCCTCATGCCCATTTCATGAGTTTG-CTTAGGCATAGGGAGTTCATTCCAAGTCT
187 CGGCTGAGCACCCT-ACGCCCATTTCATG-GGTTGACTTAGGCATAGGGAGTTCATTCCATGTCT
* * * * * * *
34827162 AAGCCCCAGCCAGACCGAGGGTTGTGCCAGCGGGA-TCGACAGCACGCAGAAAGGGACCGGG-TC
250 AAGCCCCAGCCGGATCGAGGGTTGTGGCAGCAGGACT-GACAGAACACAG-AGGGGACCGGGCT-
*
34827225 GATCCCCGACTTATGCATTATGCCTCTTCG--
312 GATCCTCGACTTATGCATTATGCCTCTTCGCA
* * * ** * * * *
34827255 GCCGGCTCAACGCCCGCACGCTTGTTTCATGGGTTAACTTATGCATACGAAGTTCAT
1 GTCGGCTCAGCGCCCACACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
34827312 TTCTAGTCTA
Statistics
Matches: 618, Mismatches: 113, Indels: 72
0.77 0.14 0.09
Matches are distributed among these distances:
342 3 0.00
343 140 0.23
344 1 0.00
346 5 0.01
347 1 0.00
348 2 0.00
349 2 0.00
351 1 0.00
352 1 0.00
353 1 0.00
354 96 0.16
355 143 0.23
356 109 0.18
357 1 0.00
358 2 0.00
359 1 0.00
361 2 0.00
362 2 0.00
363 2 0.00
364 4 0.01
365 1 0.00
366 1 0.00
367 94 0.15
368 3 0.00
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.23
Consensus pattern (343 bp):
GTCGGCTCAGCGCCCACACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTC
TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTACGACAGTAGGATCG
ACAGCACGCAGGGGGGACCGGGCCGATCCTCGGCTTACGCATTCTACCTCTTCGGCCGGCTGAGC
ACCCTACGCCCATTTCATGGGTTGACTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCC
GGATCGAGGGTTGTGGCAGCAGGACTGACAGAACACAGAGGGGACCGGGCTGATCCTCGACTTAT
GCATTATGCCTCTTCGCA
Found at i:34827444 original size:157 final size:157
Alignment explanation
Indices: 34826980--34827480 Score: 513
Period size: 159 Copynumber: 3.2 Consensus size: 157
34826970 CCCAGTCTAA
* * * * *
34826980 GCATACGGAGTTCATCCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGATAGTAGGATCGACA
1 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTATGATAGCAGGATCGACA
* * * * *
34827045 GCACGCAGGGGGGACCAGGCCGATCCTCGGGTTACGCATTCTACCTCTTCGGCCGGTTGAGCGCC
66 GCACGCA-GGGGGACCAGGTCGATCCCCGGCTTACGCATTCTGCCTCTTCGGCCGGCTGAGCGCC
* * * * *
34827110 C-TCATGCCCATTTCATGAGTTTGCTTAG
130 CGT-ACGCTCGTTTCATGGGTTAGCTTAG
* * ** * ** *
34827138 GCATAGGGAGTTCATTCCAAGTCTAAGCCCCAG-CCAGACCGAGGGTTGTGCCAGCGGGATCGAC
1 GCATACGGAGTTCATTCCTAGTCTAAG-ATCAGACCAGACCGAGGGTTATGATAGCAGGATCGAC
* * * * * * *
34827202 AGCACGCAGAAAGGGACCGGGTCGATCCCCGACTTATGCATTATGCCTCTTCGGCCGGCTCAACG
65 AGCACGCAG--GGGGACCAGGTCGATCCCCGGCTTACGCATTCTGCCTCTTCGGCCGGCTGAGCG
* * * *
34827267 CCCGCACGCTTGTTTCATGGGTTAACTTAT
128 CCCGTACGCTCGTTTCATGGGTTAGCTTAG
* * * *
34827297 GCATACGAAGTTCATTTCTAGTCTAAGATCAGACCAGACTGAGGGTTATGATAGCAGGATTGACA
1 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTATGATAGCAGGATCGACA
* * * * *
34827362 GCATGCAGGGGGATCAGGTCGATCCCCGGCTTGCGCATTCTGCCTC-TCTGACCGACTGAGCGCC
66 GCACGCAGGGGGACCAGGTCGATCCCCGGCTTACGCATTCTGCCTCTTC-GGCCGGCTGAGCGCC
* *
34827426 CGTACGCTCGTTTCATGGGTTGGCTTCG
130 CGTACGCTCGTTTCATGGGTTAGCTTAG
*
34827454 GCATACGGAGTTCATTCCTTGTCTAAG
1 GCATACGGAGTTCATTCCTAGTCTAAG
34827481 CATATGGAGT
Statistics
Matches: 271, Mismatches: 66, Indels: 13
0.77 0.19 0.04
Matches are distributed among these distances:
156 2 0.01
157 89 0.33
158 60 0.22
159 120 0.44
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTATGATAGCAGGATCGACA
GCACGCAGGGGGACCAGGTCGATCCCCGGCTTACGCATTCTGCCTCTTCGGCCGGCTGAGCGCCC
GTACGCTCGTTTCATGGGTTAGCTTAG
Found at i:34827484 original size:26 final size:26
Alignment explanation
Indices: 34827454--34827506 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
34827444 GTTGGCTTCG
**
34827454 GCATACGGAGTTCATTCCTTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
34827480 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
34827506 G
1 G
34827507 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:34828201 original size:26 final size:26
Alignment explanation
Indices: 34828172--34828224 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
34828162 GTTGACTTAG
34828172 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
34828198 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
34828224 G
1 G
34828225 ATTGGACTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:34829248 original size:26 final size:26
Alignment explanation
Indices: 34829212--34829264 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34829202 GTTGACTTAG
*
34829212 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
34829238 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
34829264 G
1 G
34829265 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:34829630 original size:26 final size:26
Alignment explanation
Indices: 34829580--34829632 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
34829570 GTTAACTTAG
* *
34829580 GCATACGGAGTTCATCCTCAGTCTAA
1 GCATACGAAGTTCATCCTCAATCTAA
34829606 GCATACGAAGTTCATTCC-CAATCTAA
1 GCATACGAAGTTCA-TCCTCAATCTAA
34829632 G
1 G
34829633 ATCGGATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCTCAATCTAA
Found at i:34829930 original size:26 final size:26
Alignment explanation
Indices: 34829901--34829951 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
34829891 TTGACTTAGG
34829901 CATACGGAGCTCATCCCCAGTCTAAT
1 CATACGGAGCTCATCCCCAGTCTAAT
* *
34829927 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGCTCATCCCCAGTCTAA
34829952 GATCAAACCG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.31, G:0.16, T:0.25
Consensus pattern (26 bp):
CATACGGAGCTCATCCCCAGTCTAAT
Found at i:34830298 original size:26 final size:26
Alignment explanation
Indices: 34830268--34830320 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
34830258 GTTGACTTAG
*
34830268 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
34830294 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
34830320 G
1 G
34830321 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:34830344 original size:368 final size:356
Alignment explanation
Indices: 34829679--34830498 Score: 996
Period size: 368 Copynumber: 2.3 Consensus size: 356
34829669 CAACACGCAG
* * * * * *
34829679 CTCTCCGATCGGCTGAGCGCCCGCACACTCATTTCATGGGTTGGCTTAGGCATACGGAGTACATT
1 CTCTCCGACCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTACATT
* * * * * * *
34829744 CCATGTCTAAGCCCTAGCCGGACTGAGAGTTGTGGTAGTAGGACCGACAAATGGGATCGGTAGCA
66 CCATGTCTAAGCCCTAGCCGGACCGAGGGTTGCGGCAGCAAGACCGACAAATGGGATCGATAGCA
*
34829809 TGCAGAGGGGGACCAGGCTGATCCCCGACTTACGCATTATCCCTTTTCGACCGGCTGAGTACCCA
131 TGCAGAGGGGGACCAGGCTGATCCCCGACTTACGCATTATCCCTTATCGACCGGCTGAGTACCCA
** * * *
34829874 CATTCTTGTTTCATGGGTTGACTTAGGCATACGGAGCTCATCCCCAGTCTAATCATACGGAGTTC
196 CACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGCTCATCCCCAGTCTAAGCATACAGAGTTC
*
34829939 ATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACATAGGGGGG
261 ATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACACAGGGGGG
*
34830004 ACCGGGTCGATCCCCAGCTTGCGCATTCTGC
326 ACCGGGTCGATCCCCAGCTTACGCATTCTGC
* *
34830035 CTCTCCGACCTACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCAAACAGAGTACATT
1 CTCTCCGACCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTACATT
* ** *
34830100 CCATGTCTAAGCCCTAGCCGGACCGAGGGTTGCGGCAGCAAGATCG-GTAGTGGGATCGATAGCA
66 CCATGTCTAAGCCCTAGCCGGACCGAGGGTTGCGGCAGCAAGACCGACAAATGGGATCGATAGCA
** * * *
34830164 TGCAGAGGGGGACTGGGCTGATCCCC-AGCTTGCGTATTATGCCTCTTCGATCGGCCTCTCCGAT
131 TGCAGAGGGGGACCAGGCTGATCCCCGA-CTTACGCATTAT-CC-CTT--ATC-G----ACCG--
* * *
34830228 TGACTGAGTTCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTA
184 -G-CTGAGTACCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGCTCATCCCCAGTCTA
* ** * * * *
34830293 AGCATACAGAGTTCATTCCTAGTCTAAGATCGGATCGGATCGAGGGTTGCGGTAGTAGGATCGAC
247 AGCATACAGAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTGCGGCAGCAGGATCGAC
* * * * *
34830358 AGCACGCAGGGGGGACTGGGTCGATCCTCGGCTTACGTATTCTGC
312 AGCACACAGGGGGGACCGGGTCGATCCCCAGCTTACGCATTCTGC
** ** * * * *
34830403 CTCTCCGGTCGGTTGAGTGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATAGAGAGTTCATT
1 CTCTCCGACCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTACATT
*
34830468 CCATGTCTAAGCCCCAGCCGGACCGAGGGTT
66 CCATGTCTAAGCCCTAGCCGGACCGAGGGTT
34830499 ATGGTAGCGG
Statistics
Matches: 392, Mismatches: 58, Indels: 16
0.84 0.12 0.03
Matches are distributed among these distances:
354 1 0.00
355 48 0.12
356 98 0.25
357 3 0.01
359 2 0.01
360 1 0.00
364 3 0.01
367 1 0.00
368 235 0.60
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (356 bp):
CTCTCCGACCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTACATT
CCATGTCTAAGCCCTAGCCGGACCGAGGGTTGCGGCAGCAAGACCGACAAATGGGATCGATAGCA
TGCAGAGGGGGACCAGGCTGATCCCCGACTTACGCATTATCCCTTATCGACCGGCTGAGTACCCA
CACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGCTCATCCCCAGTCTAAGCATACAGAGTTC
ATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACACAGGGGGG
ACCGGGTCGATCCCCAGCTTACGCATTCTGC
Found at i:34830808 original size:26 final size:26
Alignment explanation
Indices: 34830778--34830830 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
34830768 GTTGTCTTAG
34830778 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
34830804 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
34830830 G
1 G
34830831 ATTTTGAGCA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:34831529 original size:26 final size:26
Alignment explanation
Indices: 34831493--34831544 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
34831483 TTGACTTGGT
34831493 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
* *
34831519 CATATGGAGTTCATTCCTAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
34831545 ATCTGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAG
Found at i:34831877 original size:26 final size:26
Alignment explanation
Indices: 34831847--34831899 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34831837 GTTGACTTAG
*
34831847 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
34831873 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
34831899 G
1 G
34831900 ATCAGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:34832234 original size:159 final size:158
Alignment explanation
Indices: 34831873--34832377 Score: 347
Period size: 158 Copynumber: 3.2 Consensus size: 158
34831863 CCCAGTCTAA
* * * * * ** *
34831873 GCATACGGAGTTCATTCCCAGTCTAAGA-TCAGATCAGACCGAGGGTTGC-GACAATAGGATCGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATTGA-ACCGGACGGAGGGTTGCAG-CAGCAGGATCGA
* * * * * * * * * * * *
34831936 TAGCACGCAGGGGGGACCGGGTC-GATCCCCCGCATACACATTCTGCCTCTCCGACCGGTTGAGC
64 CAGCACGCAGGGGGGACC-GGACAGAACCACAGCTTACACATTATGCCTCTTCGATCGGCTCAAC
* * * * *
34832000 ACCCGCATGCCCGTTTCATGGGTTGGCTTAG
128 GCCCGCACGCTCATTTCATGGGTTGACTTAG
** * **** * * * * * *
34832031 GCATGGGGAGTTCATT-CCATGTCTAAGCCCCAGCCAGACCGAGGGTT-CTGACAGCGGGATTGA
1 GCATACGAAGTTCATTCCCA-GTCTAAGATTGAACCGGACGGAGGGTTGCAG-CAGCAGGATCGA
* * * *
34832094 CAGCACGCAGAGGGGGATCGGACCGAACCCCAGCTTACACGTTATGCCTCTTCGA-CTGGCTCAA
64 CAGCACGCAG-GGGGGACCGGACAGAACCACAGCTTACACATTATGCCTCTTCGATC-GGCTCAA
* * *
34832158 CGCCCGCATGCTCGTTTCATGGGTTGACTTAT
127 CGCCCGCACGCTCATTTCATGGGTTGACTTAG
* * *
34832190 GCATACGAAGTTCATTCCCAGTTTAAGATTGAACCGGACGGAGGGTTGCAGTAGTAGGATCGACA
1 GCATACGAAGTTCATTCCCAGTCTAAGATTGAACCGGACGGAGGGTTGCAGCAGCAGGATCGACA
* * * * * * * *
34832255 GCACGCAGGGGGGACCGGATAGATCCATAGCTTGCGCATTCTGCCTCTTCGATCGGCTGAGCGCC
66 GCACGCAGGGGGGACCGGACAGAACCACAGCTTACACATTATGCCTCTTCGATCGGCTCAACGCC
* * ** *
34832320 CGTACGTTCATTTTGTGGGTTGCCTTAG
131 CGCACGCTCATTTCATGGGTTGACTTAG
*
34832348 GCATACGGAGTTCATTCCCAGTCTAAGATT
1 GCATACGAAGTTCATTCCCAGTCTAAGATT
34832378 TTGAGCCACA
Statistics
Matches: 273, Mismatches: 65, Indels: 18
0.77 0.18 0.05
Matches are distributed among these distances:
157 4 0.01
158 147 0.54
159 117 0.43
160 5 0.02
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (158 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATTGAACCGGACGGAGGGTTGCAGCAGCAGGATCGACA
GCACGCAGGGGGGACCGGACAGAACCACAGCTTACACATTATGCCTCTTCGATCGGCTCAACGCC
CGCACGCTCATTTCATGGGTTGACTTAG
Found at i:34833388 original size:26 final size:27
Alignment explanation
Indices: 34833348--34833402 Score: 94
Period size: 26 Copynumber: 2.1 Consensus size: 27
34833338 CATGGGTTGA
34833348 CTTAGGCATACGGAGTTCATCCCCAGT
1 CTTAGGCATACGGAGTTCATCCCCAGT
*
34833375 CTTA-GCATACGGAGTTCATTCCCAGT
1 CTTAGGCATACGGAGTTCATCCCCAGT
34833401 CT
1 CT
34833403 AAGATCGAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
26 23 0.85
27 4 0.15
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.29
Consensus pattern (27 bp):
CTTAGGCATACGGAGTTCATCCCCAGT
Found at i:34833797 original size:157 final size:158
Alignment explanation
Indices: 34833517--34833811 Score: 344
Period size: 157 Copynumber: 1.9 Consensus size: 158
34833507 CATCTGAACC
** * *
34833517 GAGGGTTGTGGTAGCAGGATCGGTAGCACACAGAGGGGGACTAGGCCAAACCCCGACTTGCGCAT
1 GAGGGTTGCAGTAGCAGGATCGATAGCACACAGAGGGGGACCAGGCCAAACCCCGACTTGCGCAT
* * * * * *
34833582 TATGCCTCTTCGGTCGGCTCAGCGCCCGCACGCTCGTTTCATGGGTTAACTTATGCATAC-GAAG
66 TATGCCTCTTCGATCGGCTCAGCACCCGCACACTCATTTCATGGATTAACTTAGGCATACAG-AG
34833646 TTCATTCCAATCTAAGATCAGACCAAACT
130 TTCATTCCAATCTAAGATCAGACCAAACT
* * * * * * **
34833675 GAGGGTTGCAGTAGCAGGATCGATAGCACACAG-GGGGGACCCGGTCGATCCTCGGCTTGCGTGT
1 GAGGGTTGCAGTAGCAGGATCGATAGCACACAGAGGGGGACCAGGCCAAACCCCGACTTGCGCAT
* * * * *
34833739 TCTGCCTC-TCAGATCGGCTGAGCACCCGCACATTCATTTCGTGGATTAGCTTAGGCATACAGAG
66 TATGCCTCTTC-GATCGGCTCAGCACCCGCACACTCATTTCATGGATTAACTTAGGCATACAGAG
34833803 TTCATTCCA
130 TTCATTCCA
34833812 TGTCTAAGCA
Statistics
Matches: 112, Mismatches: 23, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
156 2 0.02
157 79 0.71
158 31 0.28
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.23
Consensus pattern (158 bp):
GAGGGTTGCAGTAGCAGGATCGATAGCACACAGAGGGGGACCAGGCCAAACCCCGACTTGCGCAT
TATGCCTCTTCGATCGGCTCAGCACCCGCACACTCATTTCATGGATTAACTTAGGCATACAGAGT
TCATTCCAATCTAAGATCAGACCAAACT
Found at i:34834540 original size:26 final size:26
Alignment explanation
Indices: 34834510--34834576 Score: 98
Period size: 26 Copynumber: 2.6 Consensus size: 26
34834500 GTTGACTTAG
*
34834510 GCATATGAAGTTCATCCCCAATCTAA
1 GCATATGGAGTTCATCCCCAATCTAA
* *
34834536 GCATATGGAGTTCACCCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAATCTAA
*
34834562 GCATACGGAGTTCAT
1 GCATATGGAGTTCAT
34834577 TCCATTCTAA
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 36 1.00
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (26 bp):
GCATATGGAGTTCATCCCCAATCTAA
Found at i:34834795 original size:23 final size:24
Alignment explanation
Indices: 34834768--34834821 Score: 101
Period size: 23 Copynumber: 2.3 Consensus size: 24
34834758 CAAGGGTTAT
34834768 GGCAGCAGGACTGGCGGTGGGATC
1 GGCAGCAGGACTGGCGGTGGGATC
34834792 -GCAGCAGGACTGGCGGTGGGATC
1 GGCAGCAGGACTGGCGGTGGGATC
34834815 GGCAGCA
1 GGCAGCA
34834822 CGAGAAGGGG
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
23 23 0.79
24 6 0.21
ACGTcount: A:0.19, C:0.22, G:0.48, T:0.11
Consensus pattern (24 bp):
GGCAGCAGGACTGGCGGTGGGATC
Found at i:34834955 original size:26 final size:26
Alignment explanation
Indices: 34834925--34834977 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34834915 GTTGACTTAG
34834925 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
34834951 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
34834977 G
1 G
34834978 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:34835286 original size:160 final size:159
Alignment explanation
Indices: 34835090--34835456 Score: 411
Period size: 158 Copynumber: 2.3 Consensus size: 159
34835080 CCCGTTCACC
** * *
34835090 CATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCTC-AATCGGACCGAGG
1 CATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATCGAATCAGACCGAGG
* ** *
34835154 GTTA-TGGTAGCAAGACCGGTAGGCTTGCAGAGGGGGACCGGGCCAATCCCCGGCTTGGGCATTC
66 GTTACT-GTAGCAAGACCGATA-GCACGCAG-GGGGGACCGGGCCAATCCCCGGCTTGCGCATTC
* * *
34835218 TATCTCT-TCGGCCCGCTCAGTGCCCGTACGCT
128 TACCTCTCT-GGCCCGCTCAGCGCCCGCACGCT
* * * * *
34835250 CGTTTCATGGGTTGACTTATGCATACAGAGTTCATTCCCA-GTCTAAG-ATCGGATCAGATCGAG
1 CATTTCATGGGTTGGCTTAGGCATACAGAGTTCATT-CCATGTCTAAGCATCGAATCAGACCGAG
* * * * * **
34835313 GGTTACTGTAGCAGGATCGATAGCACGCAGGGGGGATCGGGTCGATCCGTGGCTTGCGCATTCTA
65 GGTTACTGTAGCAAGACCGATAGCACGCAGGGGGGACCGGGCCAATCCCCGGCTTGCGCATTCTA
* * *
34835378 CCTCTCTGGTCGGCTGAGCGCCCGCACGCT
130 CCTCTCTGGCCCGCTCAGCGCCCGCACGCT
*
34835408 CATTTTATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCA
1 CATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCA
34835457 CACGGAGTTC
Statistics
Matches: 171, Mismatches: 30, Indels: 13
0.80 0.14 0.06
Matches are distributed among these distances:
157 3 0.02
158 90 0.53
159 10 0.06
160 64 0.37
161 4 0.02
ACGTcount: A:0.19, C:0.25, G:0.29, T:0.26
Consensus pattern (159 bp):
CATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATCGAATCAGACCGAGG
GTTACTGTAGCAAGACCGATAGCACGCAGGGGGGACCGGGCCAATCCCCGGCTTGCGCATTCTAC
CTCTCTGGCCCGCTCAGCGCCCGCACGCT
Found at i:34836249 original size:26 final size:26
Alignment explanation
Indices: 34836210--34836262 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34836200 AGTCTGATCT
*
34836210 TAGACTGGGAATGAACTCCGTATGCC
1 TAGAATGGGAATGAACTCCGTATGCC
*
34836236 TAGAATGGGGATGAACTCCGTATGCC
1 TAGAATGGGAATGAACTCCGTATGCC
34836262 T
1 T
34836263 CAGTCAACCC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (26 bp):
TAGAATGGGAATGAACTCCGTATGCC
Found at i:34837474 original size:26 final size:26
Alignment explanation
Indices: 34837438--34837490 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34837428 CCGGTCTGAA
*
34837438 CTTAGACTGGGAATGAACTCCATATG
1 CTTAAACTGGGAATGAACTCCATATG
*
34837464 CTTAAACTGGGGATGAACTCCATATG
1 CTTAAACTGGGAATGAACTCCATATG
34837490 C
1 C
34837491 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCATATG
Found at i:34838639 original size:26 final size:26
Alignment explanation
Indices: 34838600--34838653 Score: 92
Period size: 26 Copynumber: 2.1 Consensus size: 26
34838590 TTCGGTCTGA
34838600 GCTTAGACTGGGAATGAACTCCGTAT
1 GCTTAGACTGGGAATGAACTCCGTAT
34838626 GCTTAGACAT-GGAATGAACTCCGTAT
1 GCTTAGAC-TGGGAATGAACTCCGTAT
34838652 GC
1 GC
34838654 CTAAGCCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 26 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (26 bp):
GCTTAGACTGGGAATGAACTCCGTAT
Found at i:34838897 original size:355 final size:356
Alignment explanation
Indices: 34838246--34838915 Score: 832
Period size: 355 Copynumber: 1.9 Consensus size: 356
34838236 GGCTAAAAAT
*
34838246 CTTAGACTGGGAATGAACTCCGTATACTTAGACATGGAATGAACTCCATATGCATAAGTCAACCC
1 CTTAGACTGGGAATGAACTCCGTATACTTAGACATGGAATGAACTCCATATGCATAAGCCAACCC
* * * * * * * *
34838311 ATGAAACGAGCGTGCAGGTGTTGAGCTGATCGAAGAGGCATAATGCGCAAGCCGGGGATCAGCCC
66 ATGAAACGAGCGTGCAGGTGCTCAGCCGACCGAAGAGGCAGAATACGCAAGCCGGGGATCAACCA
** * ***
34838376 GATCCCCCTCTACGTGCTGTCGGTCTCACTACCACAACCCTCAGTCTAGCTGGGGCTTAGACATG
131 GATCCCCCTCTACGTGCTGTCAATCTCACTACCACAACCCTCAGTCCAGCTCAAGCTTAGACATG
* * *
34838441 GAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGAGCGCTCAGCTAGCCGAAGA
196 GAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGAGCACTCAGCCAGCCGAAGA
* * *
34838506 GGCAGAATGCTTAAGTCGGGGATCGGCCCGATCCCCC-CTGCATGCTGTCGATCCTACTGCTGGT
261 GGCAGAATGCATAAGTCAGGGATCGGCCCGATCCCCCTCTACATGCTGTCGATCCTACTGCTGGT
34838570 CCTACTATCACAATCCTCGATTCGGTCTGAG
326 CCTACTATCACAATCCTCGATTCGGTCTGAG
* * *
34838601 CTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCC
1 CTTAGACTGGGAATGAACTCCGTATACTTAGACATGGAATGAACTCCATATGCATAAGCCAACCC
* ** * * * *
34838666 ATGAAACGAGGGTGTGGGTGCTCAGCCGACCGGAGAGGTAGACTACGTAAGCCGGGGATCAACCT
66 ATGAAACGAGCGTGCAGGTGCTCAGCCGACCGAAGAGGCAGAATACGCAAGCCGGGGATCAACC-
* * * * *
34838731 AG-TCCCCC-CTGCGTGCTGTCAATC-CTGCTGCCGCAACCCTC-GATCCAGGC-CAATCTTAGA
130 AGATCCCCCTCTACGTGCTGTCAATCTC-ACTACCACAACCCTCAG-TCCA-GCTCAAGCTTAGA
* * * * * * *
34838791 C-TAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGTGGGCATTGAGCCAGCC
192 CAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGAGCACTCAGCCAGCC
* *
34838855 GGAGAGGCAGAATGCATAAGTTCAGGGATTGGCCCGATCCCCCTCTACATGCTGTCGATCC
256 GAAGAGGCAGAATGCATAAG-TCAGGGATCGGCCCGATCCCCCTCTACATGCTGTCGATCC
34838916 CGTTGCCACA
Statistics
Matches: 263, Mismatches: 45, Indels: 13
0.82 0.14 0.04
Matches are distributed among these distances:
353 3 0.01
354 104 0.40
355 139 0.53
356 17 0.06
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.21
Consensus pattern (356 bp):
CTTAGACTGGGAATGAACTCCGTATACTTAGACATGGAATGAACTCCATATGCATAAGCCAACCC
ATGAAACGAGCGTGCAGGTGCTCAGCCGACCGAAGAGGCAGAATACGCAAGCCGGGGATCAACCA
GATCCCCCTCTACGTGCTGTCAATCTCACTACCACAACCCTCAGTCCAGCTCAAGCTTAGACATG
GAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGAGCACTCAGCCAGCCGAAGA
GGCAGAATGCATAAGTCAGGGATCGGCCCGATCCCCCTCTACATGCTGTCGATCCTACTGCTGGT
CCTACTATCACAATCCTCGATTCGGTCTGAG
Found at i:34838984 original size:160 final size:158
Alignment explanation
Indices: 34838626--34839032 Score: 376
Period size: 160 Copynumber: 2.6 Consensus size: 158
34838616 AACTCCGTAT
* **
34838626 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGGGTGTGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGCACTCAG
* * * * * * *
34838691 CCGACCGGAGAGGTAGACTACGTAAGCCGGGGATCAACCTAGTCCCCCCTGCGTGCTGTCAATCC
66 CCGACCGGAGAGGCAGAATACATAAGCCAGGGATCAACCGAGTCCCCCCTACATGCTGTCAATCC
* *
34838756 TGCTGCCGCAACCCTCGATCCAGGCCAA
131 CGCTGCCACAACCCTCGATCCAGGCCAA
* * * * *
34838784 TCTTAGAC-TAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGTGGGCATTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGCACTCA
* * ***
34838848 GCC-AGCCGGAGAGGCAGAATGCATAAGTTCAGGGATTGGCCCGA-TCCCCCTCTACATGCTGTC
65 GCCGA-CCGGAGAGGCAGAATACATAAG-CCAGGGA-TCAACCGAGTCCCCC-CTACATGCTGTC
* * * * *
34838911 GATCCCGTTGCCACAACCCTCGATCC-GTCTAGG
126 AATCCCGCTGCCACAACCCTCGATCCAGGCCA-A
* * ** **
34838944 GCTTAGACATGGAATGAACTCCCTATGTCTAAGCCAACCCACAAAAC-AG-GTGTACGGGTGCTC
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGT--GGGCACTC
* * *
34839007 AGCCGACTGGAGAGGCAAAATGCATA
64 AGCCGACCGGAGAGGCAGAATACATA
34839033 TGCCGAGGAT
Statistics
Matches: 199, Mismatches: 40, Indels: 18
0.77 0.16 0.07
Matches are distributed among these distances:
157 2 0.01
158 79 0.40
159 16 0.08
160 100 0.50
161 2 0.01
ACGTcount: A:0.26, C:0.29, G:0.26, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGCACTCAG
CCGACCGGAGAGGCAGAATACATAAGCCAGGGATCAACCGAGTCCCCCCTACATGCTGTCAATCC
CGCTGCCACAACCCTCGATCCAGGCCAA
Found at i:34839458 original size:170 final size:169
Alignment explanation
Indices: 34839176--34839486 Score: 417
Period size: 170 Copynumber: 1.8 Consensus size: 169
34839166 CCTCGGTCTA
*
34839176 GCTGGGACTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACTAGT
1 GCTGGGACTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGAGT
* * * *
34839241 GCTCAGTCAGTCGGAGGGCATAATGAGCAAGCCGGGGATTAGCCCGATCCCCCTCTACGTGCTGT
66 GCTCAGTCAGTCAGAGGGCATAATGAGCAAGCCAGGGATCAGCCCGATCCCCC-CTACGTGCTAT
34839306 CGATCCCGCTGCGGGTCCTACTGCCATAACCGTCAGTTCG
130 CGATCCCGCTGCGGGTCCTACTGCCATAACCGTCAGTTCG
* * * * * *
34839346 GCTGGGGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCATCCCATGAAACGAGCTTACGGGT
1 GCTGGGACTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGAGT
* * * * * * **
34839411 GCTCAGTCGGTTAGAGAGGCA-AATGTGTAAGTCAGGGATCGGCCCGATCCCCCCTGTGTGCTAT
66 GCTCAGTCAGTCAGAG-GGCATAATGAGCAAGCCAGGGATCAGCCCGATCCCCCCTACGTGCTAT
*
34839475 CGATCCTGCTGC
130 CGATCCCGCTGC
34839487 CCAACCCTCG
Statistics
Matches: 120, Mismatches: 20, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
169 19 0.16
170 97 0.81
171 4 0.03
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.22
Consensus pattern (169 bp):
GCTGGGACTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGAGT
GCTCAGTCAGTCAGAGGGCATAATGAGCAAGCCAGGGATCAGCCCGATCCCCCCTACGTGCTATC
GATCCCGCTGCGGGTCCTACTGCCATAACCGTCAGTTCG
Found at i:34839793 original size:21 final size:21
Alignment explanation
Indices: 34839767--34839810 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
34839757 CCCATTTTAT
34839767 CCCCTCTACGTGATGTCGATC
1 CCCCTCTACGTGATGTCGATC
* *
34839788 CCCCTCTGCGTGCTGTCGATC
1 CCCCTCTACGTGATGTCGATC
34839809 CC
1 CC
34839811 GCTGCCGGTC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.09, C:0.43, G:0.20, T:0.27
Consensus pattern (21 bp):
CCCCTCTACGTGATGTCGATC
Found at i:34840355 original size:26 final size:26
Alignment explanation
Indices: 34840326--34840378 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34840316 CCGGTTTGAT
34840326 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
34840352 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
34840378 C
1 C
34840379 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34840784 original size:159 final size:158
Alignment explanation
Indices: 34840511--34840845 Score: 483
Period size: 159 Copynumber: 2.1 Consensus size: 158
34840501 GGTCCTACTG
* *
34840511 CCACAACCCTCGGTCCGACAGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAT
1 CCACAACCCTCGGTCCGACAGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
* * *
34840576 GAAACGAGCGTGCGGGCGCTGAGCCGGTCGGGGAGGCATAATGCGCAAGCCGGGCATCGGCCCGG
66 GAAACGAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCCGGGCATCGGCCCGG
* **
34840641 TCCCCCTCTGTGTGCTGTCGATCCCGCTA
131 TCCCCC-CTGCGTGCTACCGATCCCGCTA
*
34840670 CCACAACCCTCGGTCCGGCTA-GGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
1 CCACAACCCTCGGTCCGAC-AGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
* * * * *
34840734 CGAAACGGGTGTGCGGGCGCTCAGCCGGTTGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCG
65 CGAAACGAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCCGGGCATCGGCCCG
* *
34840799 GTCCCCCCTGCGTGCTACCGATCCTGCTG
130 GTCCCCCCTGCGTGCTACCGATCCCGCTA
* *
34840828 TCACAACCCTCGATCCGA
1 CCACAACCCTCGGTCCGA
34840846 TCCAATCTTA
Statistics
Matches: 156, Mismatches: 19, Indels: 3
0.88 0.11 0.02
Matches are distributed among these distances:
158 32 0.21
159 123 0.79
160 1 0.01
ACGTcount: A:0.20, C:0.33, G:0.30, T:0.16
Consensus pattern (158 bp):
CCACAACCCTCGGTCCGACAGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
GAAACGAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCCGGGCATCGGCCCGG
TCCCCCCTGCGTGCTACCGATCCCGCTA
Found at i:34840881 original size:26 final size:26
Alignment explanation
Indices: 34840852--34840904 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
34840842 CCGATCCAAT
*
34840852 CTTAGACCGGGAATGAACTCCGTATG
1 CTTAGACCGGGAATGAACTCCATATG
* *
34840878 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACCGGGAATGAACTCCATATG
34840904 C
1 C
34840905 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACCGGGAATGAACTCCATATG
Found at i:34841612 original size:26 final size:26
Alignment explanation
Indices: 34841574--34841652 Score: 88
Period size: 26 Copynumber: 3.0 Consensus size: 26
34841564 GGCTCAAACT
34841574 CTTAGAC-TGGGAATGAACCCCGCATG
1 CTTAGACAT-GGAATGAACCCCGCATG
* * * *
34841600 TTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACCCCGCATG
* *
34841626 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACCCCGCATG
34841652 C
1 C
34841653 CTAAGCCAAC
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
26 45 0.98
27 1 0.02
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACATGGAATGAACCCCGCATG
Found at i:34843184 original size:26 final size:26
Alignment explanation
Indices: 34843148--34843200 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
34843138 CCAGTTCAAT
34843148 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
34843174 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
34843200 C
1 C
34843201 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34843853 original size:26 final size:26
Alignment explanation
Indices: 34843824--34843876 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34843814 CCGATCTGAT
*
34843824 CTTAGACT-GGGAATGAACTCTGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
34843850 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
34843876 C
1 C
34843877 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:34845494 original size:160 final size:157
Alignment explanation
Indices: 34845069--34845494 Score: 387
Period size: 160 Copynumber: 2.7 Consensus size: 157
34845059 AACTCCGTAT
* * **
34845069 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAAGACACGAAA-GGAGCGTACGGGCGCTCA
1 GCTTAGATATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGG-GCGTACGGGC-CTCA
* * * * * *
34845133 GTCGGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCACCTGCATGTTGTCGAT
64 G-CAGCCGGAGAGGCAGAATACGCAAGCCGGGGATCGGCCCGATCCCCACCTGCATGCTATCGAT
* * *
34845198 CCTGCTGCCACAACCCTCGGTCCGGTCCGA
128 CCCGCTGCCACAACCCTCAGTCCGATCCGA
* * * * * * *
34845228 TCTTAGACTA-GGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTACAGGCCGTTT
1 GCTTAGA-TATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGGCGTACGGGCC--TC
* * * * * *
34845292 AGCAGGCCGAAAAGGCA-TATACGCAAGTCAGGGATCCGGCCCGATCCCC-CTTTGCATGCTATC
63 AGCA-GCCGGAGAGGCAGAATACGCAAGCCGGGGAT-CGGCCCGATCCCCAC-CTGCATGCTATC
* * * *
34845355 GGTCCCGCTGCCACAAACCCTCAGTCCTAT-GGG
125 GATCCCGCTGCCAC-AACCCTCAGTCCGATCCGA
* *
34845388 GCTTAGATATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTCGCGGGCACTCA
1 GCTTAGATATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGGCGT-ACGGGC-CTCA
*
34845453 GCCAGCCGGAGAGGAAGAATTACGCAAG-CGGGGATCGGCCCG
64 G-CAGCCGGAGAGGCAGAA-TACGCAAGCCGGGGATCGGCCCG
34845495 GGTCCCCCCG
Statistics
Matches: 209, Mismatches: 44, Indels: 27
0.75 0.16 0.10
Matches are distributed among these distances:
158 1 0.00
159 63 0.30
160 111 0.53
161 25 0.12
162 9 0.04
ACGTcount: A:0.25, C:0.30, G:0.28, T:0.17
Consensus pattern (157 bp):
GCTTAGATATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGGCGTACGGGCCTCAGC
AGCCGGAGAGGCAGAATACGCAAGCCGGGGATCGGCCCGATCCCCACCTGCATGCTATCGATCCC
GCTGCCACAACCCTCAGTCCGATCCGA
Found at i:34847439 original size:26 final size:26
Alignment explanation
Indices: 34847398--34847450 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34847388 CTGATCCGAT
*
34847398 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
34847424 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
34847450 C
1 C
34847451 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34847804 original size:26 final size:26
Alignment explanation
Indices: 34847766--34847818 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
34847756 CCGATCCGAT
34847766 CTTAGACTGGGAATGAACT-CTGTATG
1 CTTAGACTGGGAATGAACTGC-GTATG
34847792 CTTAGACAT-GGAATGAACTGCGTATG
1 CTTAGAC-TGGGAATGAACTGCGTATG
34847818 C
1 C
34847819 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTGCGTATG
Found at i:34847808 original size:184 final size:185
Alignment explanation
Indices: 34847607--34847977 Score: 530
Period size: 184 Copynumber: 2.0 Consensus size: 185
34847597 TCCGGTTGGG
* * *
34847607 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACAAGCGTACAGGCCCTCAG
1 GCTTAGACATGGAATGAACTGCGTATGCCTAAGCCAACCCATGAAACAAGAGTACAGGCCCTCAA
* **
34847672 CCGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGGTCCCCCC-TGGGTACTACCGATC
66 CCGACCGAAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGGTCCCCCCTTGCCTACTACCGATC
*
34847736 TTGCTGTCGCAACCCTCAATCCGATCCGATCTTAGACTGGGAATGAAC-TCTGTAT
131 CTGCTGTCGCAACCCTCAATCCGATCCGATCTTAGACTGGGAATGAACTTC-GTAT
* * * *
34847791 GCTTAGACATGGAATGAACTGCGTATGCCTAAGCCAACCCATGAAACGAGAGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTGCGTATGCCTAAGCCAACCCATGAAACAAGAGTACAGGCCCTCAA
* * * * **
34847856 CCGGCTGAAGAGGCAGAATGCGCAAGCCAGGGATTGACCCGGTCCCCCCTTGCCTGCTGTCGATC
66 CCGACCGAAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGGTCCCCCCTTGCCTACTACCGATC
* * * *
34847921 CTGCTGTCGTAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTTCGTAT
131 CTGCTGTCGCAACCCTCAATCCGATCCGATCTTAGACTGGGAATGAACTTCGTAT
34847976 GC
1 GC
34847978 CTAAGTCAAC
Statistics
Matches: 164, Mismatches: 21, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
184 103 0.63
185 59 0.36
186 2 0.01
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (185 bp):
GCTTAGACATGGAATGAACTGCGTATGCCTAAGCCAACCCATGAAACAAGAGTACAGGCCCTCAA
CCGACCGAAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGGTCCCCCCTTGCCTACTACCGATC
CTGCTGTCGCAACCCTCAATCCGATCCGATCTTAGACTGGGAATGAACTTCGTAT
Found at i:34848048 original size:159 final size:159
Alignment explanation
Indices: 34847791--34848768 Score: 860
Period size: 159 Copynumber: 6.2 Consensus size: 159
34847781 AACTCTGTAT
* * *
34847791 GCTTAGACATGGAATGAACTGCGTATGCCTAAGCCAACCCATGAAACGAGAGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * *
34847856 CCGG-CTGAAGAGGCAGAATGCGCAAGCCAGGGATTGACCCGGTCCCCCCTTGCCTGCTGTCGAT
66 CCGGTC-GGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGT-CCCCCTTGCGTGCTGTCGAT
* **
34847920 CCTGCTGTCGTAACCCTCAGTCCGGTCT-GA
129 CCTGCTGCCACAACCCTCAGTCCGGTCTGGA
* * * * * *
34847950 TCTTAGAC-TGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
* * * * * * * * *
34848014 GCCGATCAGAGAGGCATAATGCGCAAGTCGGGGATCGGCCCAGTCCTCCTCTACGTGCTGTCGGT
65 GCCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCT-TGCGTGCTGTCGAT
* * *
34848079 -CTCACTGCCACAACCCTCATTCCGG-CTGGG
129 CCT-GCTGCCACAACCCTCAGTCCGGTCTGGA
* * *
34848109 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * *
34848174 TCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCTGATCCCCCCTGCGTGCTATCGATCC
66 CCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTTGCGTGCTGTCGATCC
* ** * *
34848239 TGCTACTGCAACCCT-TGATCTGGTCT-GA
131 TGCTGCCACAACCCTCAG-TCCGGTCTGGA
* * * *
34848267 TG-TTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGTGTGCTG
1 -GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTC
*** * * * * * * * *
34848330 AG-CTAACTGGAGAGGCATAATGCGCGAGCTGGGGATCGGCCGGGTCCTCCTCT-AGTGCTATCG
64 AGCCGGTC-GGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCT-TGCGTGCTGTCG
* * * * * * *
34848393 GTCCCGCTGCCATAGCCCTCGGTCTGGT-TGGG
127 ATCCTGCTGCCACAACCCTCAGTCCGGTCTGGA
* * * **
34848425 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAACCATGAAACGGGCGTGCAAGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * *
34848490 CCGGTCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCGGTCCCCCTCTACATGCTGTCGGTC
66 CCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCT-TGCGTGCTGTCGATC
* * *
34848555 CCGCTGCCACAACCCTCGGTCCGGT-TGGG
130 CTGCTGCCACAACCCTCAGTCCGGTCTGGA
* * * *
34848584 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTACGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * *
34848649 CCGGTCGGAGAGGCAAAATGCGTAAGCCGAGGATTGTA-CTGGTCCCCC-TGCGTGCTG-CTGAT
66 CCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCG-ACCCGGTCCCCCTTGCGTGCTGTC-GAT
* * * * *
34848711 CGTACTGCCATAAGCCTC-GATCCGATCT-GA
129 CCTGCTGCCACAACCCTCAG-TCCGGTCTGGA
* *
34848741 TCTTAGAC-TGGGAATGAACTCTGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
34848769 TTAGACTGGG
Statistics
Matches: 667, Mismatches: 128, Indels: 50
0.79 0.15 0.06
Matches are distributed among these distances:
156 3 0.00
157 56 0.08
158 248 0.37
159 358 0.54
160 2 0.00
ACGTcount: A:0.22, C:0.29, G:0.29, T:0.20
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
CCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTTGCGTGCTGTCGATCC
TGCTGCCACAACCCTCAGTCCGGTCTGGA
Found at i:34848661 original size:317 final size:318
Alignment explanation
Indices: 34847791--34848670 Score: 1076
Period size: 317 Copynumber: 2.8 Consensus size: 318
34847781 AACTCTGTAT
* * * *
34847791 GCTTAGACATGGAATGAACTGCGTATGCCTAAGCCAACCCATGAAACGAGAGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * *
34847856 CCGG-CTGAAGAGGCAGAATGCGCAAGCCAGGGATTGACCCGGTCCCCCCTTGCCTGCTGTCGAT
66 CCGGTC-GGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCC-TGCATGCTGTCGAT
* * * * *
34847920 CCTGCTGTCGTAACCCTCAGTCCGGTCT-GATCTTAGACTGGGAATGAACTTCGTATGCCTAAGT
129 CCTGCTGCCGCAACCCTCGGTCCGGTCTGGAGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * *
34847984 CAACCCACGAAACGAACGTGCGGGCGCTGAGCCGATCAGAGAGGCATAATGCGCAAGTCGGGGAT
194 CAACCCATGAAACGAGCGTGCGGGTGCTGAGCCGATCGGAGAGGCATAATGCGCAAGTCGGGGAT
* * *
34848049 CGGCCCAGTCCTCCTCTACGTGCTGTCGGTCTCACTGCCACAACCCTCATTCCGGCTGGG
259 CGGCCCAGTCCTCCTCTACGTGCTATCGGTCCCACTGCCACAACCCTCAGTCCGGCTGGG
* *
34848109 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * *
34848174 TCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCTGATCCCCCCTGCGTGCTATCGATCC
66 CCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGCATGCTGTCGATCC
* * * * *
34848239 TGCTACTGCAACCCTTGATCTGGTCT-GATG-TTAGACTGGGAATGAACTCCGTATGCCTAAGTC
131 TGCTGCCGCAACCCTCGGTCCGGTCTGGA-GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * *
34848302 AACCCATGAAACGAGCGTGCGTGTGCTGAG-CTAACTGGAGAGGCATAATGCGCGAG-CTGGGGA
195 AACCCATGAAACGAGCGTGCGGGTGCTGAGCCGATC-GGAGAGGCATAATGCGCAAGTC-GGGGA
** * * * * * *
34848365 TCGGCCGGGTCCTCCTCTA-GTGCTATCGGTCCCGCTGCCATAGCCCTCGGTCTGGTTGGG
258 TCGGCCCAGTCCTCCTCTACGTGCTATCGGTCCCACTGCCACAACCCTCAGTCCGGCTGGG
* * **
34848425 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAACCATGAAACGGGCGTGCAAGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * *
34848490 CCGGTCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCGGTCCCCCTCTACATGCTGTCGGTC
66 CCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCC-CTGCATGCTGTCGATC
* * * * *
34848555 CCGCTGCCACAACCCTCGGTCCGGT-TGGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGC
130 CTGCTGCCGCAACCCTCGGTCCGGTCTGGAGCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGT
* * * * *
34848618 CAACCCATGAAACGGGCGTACGGGTGCTCAGCCGGTCGGAGAGGCAAAATGCG
194 CAACCCATGAAACGAGCGTGCGGGTGCTGAGCCGATCGGAGAGGCATAATGCG
34848671 TAAGCCGAGG
Statistics
Matches: 477, Mismatches: 76, Indels: 19
0.83 0.13 0.03
Matches are distributed among these distances:
316 140 0.29
317 233 0.49
318 103 0.22
319 1 0.00
ACGTcount: A:0.22, C:0.29, G:0.29, T:0.19
Consensus pattern (318 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
CCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGCATGCTGTCGATCC
TGCTGCCGCAACCCTCGGTCCGGTCTGGAGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
ACCCATGAAACGAGCGTGCGGGTGCTGAGCCGATCGGAGAGGCATAATGCGCAAGTCGGGGATCG
GCCCAGTCCTCCTCTACGTGCTATCGGTCCCACTGCCACAACCCTCAGTCCGGCTGGG
Found at i:34848771 original size:26 final size:26
Alignment explanation
Indices: 34848742--34848794 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34848732 CCGATCTGAT
*
34848742 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
34848768 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
34848794 C
1 C
34848795 GTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34849073 original size:345 final size:345
Alignment explanation
Indices: 34848546--34849387 Score: 1069
Period size: 345 Copynumber: 2.4 Consensus size: 345
34848536 CCTCTACATG
* * * * * * **
34848546 CTGTCGGTCCCGCTGCCACAACCCTCGGTCCGGTTGGGGCTTAGACATGGAATGAACTCCCTATG
1 CTGTCGATCCTGCTGCCACAACCCTCGATCCAGCTAGGGCTTAGACATGGAATGAACTCTGTATG
* * ** * *
34848611 CCTAAGCCAACCCATGAAACGGGCGTACGGGTGCTCAGCCGGTCGGAGAGGCAAAATGCGTAAGC
66 CCTAAGCCAACCCATGAAACGAGCGTGCTAGTGCTCAGCCGGCCGGAGAGGCAAAATGCGCAAGC
* * * * * * * **
34848676 CGAGGATTGTACT-GGTCCCCCTGCGTGCTGCTGATCGTACTGCCATAAGCCTCGATCCGATCTG
131 CGGGGATCG-GCTCGGTCCCCCTGCGTCCTGCTGATCCTACTACCACAAGCCTCGATCCGATCCA
* * ** *
34848740 ATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCGTAAGTCAA-
195 ATCTTAGACTGGGAATGAACTCCGTACGCTTAGACTAAGGATGAACTCCGTATGCCTAAGTCAAC
* * * *
34848804 CCATGAAACGAGCGTACGGGGTGCTCAACCGATCGGAGAGGTC-GTCGGAGAGGCATAATGCACA
260 CCATGAAACGAGCATAC-GGGTGCTCAACCGATCGGAGAGGCCAGTCGAAGAGGCATAATACACA
* *
34848868 AGCCAGGGATCAGTCGACCCCG
324 AGCCAGGGATCAGCCGACCCCA
* * * * ** *
34848890 CTGTTGGTCCTGCTGCCACAACCCTTGATCCAGCTAGGGCTTTTGATGTGGAATGAACTCTGTAC
1 CTGTCGATCCTGCTGCCACAACCCTCGATCCAGCTAGGGC-TTAGACATGGAATGAACTCTGTAT
* * *
34848955 GCCTAAGCCGACCCATGAAACGAGCGTGCTAGTGCTCAGCCGGCCGGAGAGGTAGAATGCGCAAG
65 GCCTAAGCCAACCCATGAAACGAGCGTGCTAGTGCTCAGCCGGCCGGAGAGGCAAAATGCGCAAG
* * * *
34849020 CCGGGGATCGGCTCGATCCCCCTGCGTCCTGTTGATCCTACTATCGCAAGCCTCGATCCGATCCA
130 CCGGGGATCGGCTCGGTCCCCCTGCGTCCTGCTGATCCTACTACCACAAGCCTCGATCCGATCCA
34849085 ATCTTAGACTGGGAATGAACTCCGTACGCTTAGACTAAGGATGAACTCCGTATGCCTAAGTCAAC
195 ATCTTAGACTGGGAATGAACTCCGTACGCTTAGACTAAGGATGAACTCCGTATGCCTAAGTCAAC
* * **
34849150 CCATGAAACGAGCATACGGGTGCTCAGCCGATTGGAGAGGCCAGTCGAAGAGGCATAATACGTAA
260 CCATGAAACGAGCATACGGGTGCTCAACCGATCGGAGAGGCCAGTCGAAGAGGCATAATACACAA
* * *
34849215 GCCGGGGATTAGCCGATCCCA
325 GCCAGGGATCAGCCGACCCCA
* *
34849236 CTGTCGATCCTGCTGCCACAACCCTCGGTCCAGCTAGGGCTTAGACATGCAATGAACTCTGTATG
1 CTGTCGATCCTGCTGCCACAACCCTCGATCCAGCTAGGGCTTAGACATGGAATGAACTCTGTATG
* * * *
34849301 CCTAAGCCAACCCACGAAACGAGCGTGCTAGTGCTCAGTCGGCTGGAGAGGCATAATGCGCAAGC
66 CCTAAGCCAACCCATGAAACGAGCGTGCTAGTGCTCAGCCGGCCGGAGAGGCAAAATGCGCAAGC
* *
34849366 CAGGGATCAGCTCGGTCCCCCT
131 CGGGGATCGGCTCGGTCCCCCT
34849388 CTGCGTGCTG
Statistics
Matches: 423, Mismatches: 71, Indels: 7
0.84 0.14 0.01
Matches are distributed among these distances:
344 35 0.08
345 302 0.71
346 86 0.20
ACGTcount: A:0.24, C:0.28, G:0.28, T:0.20
Consensus pattern (345 bp):
CTGTCGATCCTGCTGCCACAACCCTCGATCCAGCTAGGGCTTAGACATGGAATGAACTCTGTATG
CCTAAGCCAACCCATGAAACGAGCGTGCTAGTGCTCAGCCGGCCGGAGAGGCAAAATGCGCAAGC
CGGGGATCGGCTCGGTCCCCCTGCGTCCTGCTGATCCTACTACCACAAGCCTCGATCCGATCCAA
TCTTAGACTGGGAATGAACTCCGTACGCTTAGACTAAGGATGAACTCCGTATGCCTAAGTCAACC
CATGAAACGAGCATACGGGTGCTCAACCGATCGGAGAGGCCAGTCGAAGAGGCATAATACACAAG
CCAGGGATCAGCCGACCCCA
Found at i:34849652 original size:26 final size:26
Alignment explanation
Indices: 34849601--34849653 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
34849591 CTGGTTTGAT
* *
34849601 CTTAGATTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
34849627 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
34849653 C
1 C
34849654 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:34850358 original size:26 final size:26
Alignment explanation
Indices: 34850319--34850371 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
34850309 GGCTCAAAAT
* *
34850319 CTTAGACTTTGAATGGACTCCATATG
1 CTTAGACTTGGAATGAACTCCATATG
*
34850345 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACTTGGAATGAACTCCATATG
34850371 C
1 C
34850372 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
CTTAGACTTGGAATGAACTCCATATG
Found at i:34850717 original size:159 final size:157
Alignment explanation
Indices: 34850342--34850792 Score: 485
Period size: 156 Copynumber: 2.9 Consensus size: 157
34850332 TGGACTCCAT
* *
34850342 ATGCTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAC-GAGCGTGCGGGCGCT
1 ATGCTTAGACTTGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACAG-GCGTGCGGGCGCT
* * * * * *
34850406 CAGCTGGCTGGACAGGCAGAATGCGCAAGCTGAGGATCAACCCGGTCCCCCTGCATGCTGTCAAT
65 CAGCCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCGGTCCCCCTGCATGCTATCAAT
**
34850471 CCTGCTACTGCAACCCTCGGTCCAGCTG
130 CCTGCTACCACAACCCTCGGTCCAGCTG
* * * * * * * * *
34850499 AT-CTTACACTTGGAATGAACTTCATATGCATAAGTCAACCCATGAAACAAGAGTACGGGCGTTG
1 ATGCTTAGACTTGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACAGGCGTGCGGGCGCTC
* * * * * * **
34850563 AGCCAGCCGAAGTGGCATAATGCGCAAGCCGAGGATCAGCCCGGTCCACCTTTGCGTGCTATCGG
66 AGCCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCGGTCC-CC-CTGCATGCTATCAA
* **
34850628 TCTTGCTACCACAACCCTCGGTCTGGCTG
129 TCCTGCTACCACAACCCTCGGTCCAGCTG
* * *
34850657 -TGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAACCATGAAACAGGCGTGCGGGCGCT
1 AT-GCTTAGACTTGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACAGGCGTGCGGGCGCT
* * * ** * *
34850721 CAGCCGGCCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCAATCCCCCTGCATACTACCAAT
65 CAGCCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCGGTCCCCCTGCATGCTATCAAT
34850786 CCTGCTA
130 CCTGCTA
34850793 TCGTAACTCT
Statistics
Matches: 231, Mismatches: 58, Indels: 10
0.77 0.19 0.03
Matches are distributed among these distances:
156 88 0.38
157 20 0.09
158 35 0.15
159 88 0.38
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (157 bp):
ATGCTTAGACTTGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACAGGCGTGCGGGCGCTC
AGCCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCGGTCCCCCTGCATGCTATCAATC
CTGCTACCACAACCCTCGGTCCAGCTG
Found at i:34850846 original size:26 final size:26
Alignment explanation
Indices: 34850817--34850869 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
34850807 CCGGTTCGAT
34850817 CTTAGACAGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
* * *
34850843 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
34850869 C
1 C
34850870 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Found at i:34852032 original size:26 final size:26
Alignment explanation
Indices: 34851994--34852046 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34851984 GGCTCAAACT
34851994 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
34852020 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
34852046 C
1 C
34852047 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:34852342 original size:159 final size:158
Alignment explanation
Indices: 34852019--34852465 Score: 438
Period size: 159 Copynumber: 2.8 Consensus size: 158
34852009 AACTCCATAT
*
34852019 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * ** **
34852084 TCGGCCGGAG-GGACAGAATGCGCAAGTCGGGGATCGGCCTGATCCCCCCCTGAATGCTGTCGAT
66 TCGGCCGGAGAGG-CAAAATGCGCAAGCCGAGGATCGGCCCGGT-CCCCCCTGCGTGCTACCGAT
** *
34852148 CTTGCTGCCACAACCTTCAGTCCGATCCAA
129 CCCGCTGCCACAACCTCCAGTCCGATCCAA
* * * * *
34852178 TCTTAGA-TTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGCTAA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * *
34852242 G-CAGGCCGAAGAGGCATAATGCACAACCCGAGGATTGGCCCGGTCCCCCTCTGCGTGCTACCGG
65 GTC-GGCCGGAGAGGCAAAATGCGCAAGCCGAGGATCGGCCCGGTCCCCC-CTGCGTGCTACCGA
* ****
34852306 TCCCGCTGCCACAATCCTCCA-TCCGGTTGGG
128 TCCCGCTGCCACAA-CCTCCAGTCCGATCCAA
* * * *
34852337 GCTTAGACATGGAATGAACTCCCTCTGCCTAAGCCAACCCAC-AATAC-AGGCGTGCTGGCCCTC
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAA-ACGA-GCGTGCGGGCGCTC
* * * * *
34852400 AGTCGGCTGGGGAGGCAAAATGCGCAAGCCGAGGATCGACCCGGTCCCCCCTGCGTACTGCCGAT
64 AGTCGGCCGGAGAGGCAAAATGCGCAAGCCGAGGATCGGCCCGGTCCCCCCTGCGTGCTACCGAT
34852465 C
129 C
34852466 ATGATGCTGC
Statistics
Matches: 231, Mismatches: 48, Indels: 19
0.78 0.16 0.06
Matches are distributed among these distances:
158 23 0.10
159 199 0.86
160 9 0.04
ACGTcount: A:0.23, C:0.32, G:0.27, T:0.17
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
TCGGCCGGAGAGGCAAAATGCGCAAGCCGAGGATCGGCCCGGTCCCCCCTGCGTGCTACCGATCC
CGCTGCCACAACCTCCAGTCCGATCCAA
Found at i:34852525 original size:26 final size:26
Alignment explanation
Indices: 34852496--34852551 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 26
34852486 CTGGTTCGAT
* *
34852496 CTTAGATTGGGAATGAACTCTGTATC
1 CTTAGACTGGGAATGAACTCCGTATC
* *
34852522 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATC
34852548 CTTA
1 CTTA
34852552 AGTTAACCCA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATC
Found at i:34853577 original size:26 final size:26
Alignment explanation
Indices: 34853541--34853593 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
34853531 CTAGTTCGAT
34853541 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
34853567 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
34853593 C
1 C
34853594 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34854756 original size:26 final size:26
Alignment explanation
Indices: 34854720--34854772 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
34854710 CTGGTCTGAT
*
34854720 CTTAGATTGGGGACGAACTCCATATG
1 CTTAGACTGGGGACGAACTCCATATG
* *
34854746 CTTAGACTGGGGTCGAACTCCTTATG
1 CTTAGACTGGGGACGAACTCCATATG
34854772 C
1 C
34854773 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.23, C:0.23, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGGACGAACTCCATATG
Found at i:34855480 original size:26 final size:26
Alignment explanation
Indices: 34855442--34855494 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34855432 GGCTCAAAAT
34855442 CTTAGACTGGGAATGAAATCCGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
*
34855468 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAAATCCGTATG
34855494 C
1 C
34855495 CTAAGCCAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCGTATG
Found at i:34855793 original size:160 final size:158
Alignment explanation
Indices: 34855627--34855971 Score: 372
Period size: 158 Copynumber: 2.2 Consensus size: 158
34855617 CTGATCCGAT
* * ** * * *
34855627 CTTAGACTGGGAATGAACTTCGTATGCATAAGTTAACCCACTTAA-TGAGCGTACGGGGCACTGA
1 CTTAGACTGGGAATGAACTCCCTATGCATAAGCCAACCCA-TGAAGCGAGCGTAC-GGGCACTCA
* * * *
34855691 ACAGGCCGAAGAGGCATAATGCGCAAGCCGGGGATCACCCCGATCCCCCTATGCATGCTATCGGT
64 ACAGGCCGAAGAGGAAGAATGCGCAAGCCGGGGATCACCCCGATCCCCC-ATGCATGCTACCGAT
*
34855756 CCCGCTGCCACAACCCTCGATCCAG-CTGGGG
128 CCCGCTGCCACAACCCTCGATCCAGTCT-GAG
* * * *
34855787 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAGCGGGCGTGCGGGCACTCAG
1 CTTAGAC-TGGGAATGAACTCCCTATGCATAAGCCAACCCATGAAGCGAGCGTACGGGCACTCAA
* ** ** *
34855851 CCGGCCGGTGAGGAAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCATGCGTGCTACCGATCC
65 CAGGCCGAAGAGGAAGAATGCGCAAGCCGGGGATCACCCCGATCCCCCATGCATGCTACCGATCC
* * * *
34855916 TGCTGCCGCAACCCTCGATCCGGTCTGAT
130 CGCTGCCACAACCCTCGATCCAGTCTGAG
* *
34855945 CTTAGACTGGGAATGGACTCCATATGC
1 CTTAGACTGGGAATGAACTCCCTATGC
34855972 TTAGACTGGG
Statistics
Matches: 153, Mismatches: 28, Indels: 10
0.80 0.15 0.05
Matches are distributed among these distances:
157 1 0.01
158 58 0.38
159 54 0.35
160 39 0.25
161 1 0.01
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.18
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCCTATGCATAAGCCAACCCATGAAGCGAGCGTACGGGCACTCAAC
AGGCCGAAGAGGAAGAATGCGCAAGCCGGGGATCACCCCGATCCCCCATGCATGCTACCGATCCC
GCTGCCACAACCCTCGATCCAGTCTGAG
Found at i:34855997 original size:26 final size:26
Alignment explanation
Indices: 34855945--34855997 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
34855935 CCGGTCTGAT
* *
34855945 CTTAGACTGGGAATGGACTCCATATG
1 CTTAGACTGGGAATGAACTCCACATG
* *
34855971 CTTAGACTGGGGATGAACTCCGCATG
1 CTTAGACTGGGAATGAACTCCACATG
34855997 C
1 C
34855998 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCACATG
Found at i:34856100 original size:184 final size:184
Alignment explanation
Indices: 34855786--34856339 Score: 693
Period size: 184 Copynumber: 3.0 Consensus size: 184
34855776 TCCAGCTGGG
* * *
34855786 GCTTAGACATGGAATGAACTCC-CTATGCCTAAGCCAACCCATGAAGCGGGCGTGCGGGCACTCA
1 GCTTAGACATGGAATGAACTCCGC-ATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
* * * * **
34855850 GCCGGCCGGTGAGGAAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCATGCGTGCTACCGATC
65 GCCGGTCGGAGAGGAAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCATACGTGCTGTCGATC
*
34855915 CTGCTGCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGGACTCCATAT
130 CTGCTGCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCATAT
* * * *
34855970 GCTTAGAC-TGGGGATGAACTCCGCATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCA
1 GCTTAGACAT-GGAATGAACTCCGCATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
* * * *
34856034 GCCGGTCGGAGAGGCAGAATGCGCAAGCTC-GGGATCGACCCGGTCCCCCCTACGTGTTGTCGAT
65 GCCGGTCGGAGAGGAAGAATGCGCAAGC-CGGGGATCGACCCGATCCCCCATACGTGCTGTCGAT
* * * * * * * * *
34856098 CCTGCTGCCGTAACCCTCGGTCTGGTTTGCTCTTAGATTGGGAATGAATTTCGTAT
129 CCTGCTGCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCATAT
* *
34856154 GCTTAGACATGGAATGAACTCTGCATGCCTAAGCCAACCCATGAAACGAACGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGCATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * *
34856219 CCGATCGGAGAGGTAGAATGTGCAAGCCGGGGATC-AGCCCAATCCCCCTTACGTGCTGTCGATC
66 CCGGTCGGAGAGGAAGAATGCGCAAGCCGGGGATCGA-CCCGATCCCCCATACGTGCTGTCGATC
* ** * *
34856283 CTGCTGTCGCAACCCTCGATCCATTCTAATCTTAGACTGGGAATGTACTCCATAT
130 CTGCTGCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCATAT
34856338 GC
1 GC
34856340 CTAAGTCAAC
Statistics
Matches: 310, Mismatches: 54, Indels: 12
0.82 0.14 0.03
Matches are distributed among these distances:
183 3 0.01
184 304 0.98
185 3 0.01
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.21
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCGCATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
CCGGTCGGAGAGGAAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCATACGTGCTGTCGATCC
TGCTGCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCATAT
Found at i:34856556 original size:685 final size:686
Alignment explanation
Indices: 34855441--34856756 Score: 1649
Period size: 685 Copynumber: 1.9 Consensus size: 686
34855431 TGGCTCAAAA
* *
34855441 TCTTAGACTGGGAATGAAATCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAATA
1 TCTTAGACTGGGAATGAAATCCGTATGCTTAGACATGGAATGAACTCCGCATGCCTAAGCCAACA
* **
34855506 CAAGAAAGGAGTGTACGGGCGCTCAGCCAGCCAAAAAGGTAGAATGCGCAAGCCAGGGATCGACC
66 CAAGAAACGAACGTACGGGCGCTCAGCCAGCCAAAAAGGTAGAATGCGCAAGCCAGGGATCGACC
* * * * * * *
34855571 AGGTCCCTACCTGCATGCTGTCCATCTTGCTACCATAACCCTCGGTCTGATCCGATCTTAGACTG
131 AGATCCC-ACCTACATGCTGTCCATCCTGCTACCACAACCCTCGATCTCATCCAATCTTAGACTG
* * * * * *
34855636 GGAATGAACTTCGTATGCATAAGTTAACCCACTTAATGAGCGTACGGGGCACTGAACAGGCCGAA
195 GGAATGAACTCCATATGCATAAGTCAACCCACTAAACGAGCGTACGAGGCACTGAACAGGCCGAA
* * *
34855701 GAGGCATAATGCGCAAGCCGGGGATCACCCCGATCCCCCTATGCATGCTATCGGTCCCGCTGCCA
260 GAGGCATAATGCACAAGCCAGGGATCACCCCGATCCCCCTATGCATGCTACCGGTCCCGCTGCCA
34855766 CAACCCTCGATCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAA
325 CAACCCTCGATCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAA
* * * * *
34855831 GCGGGCGTGCGGGCACTCAGCCGGCCGGTGAGGAAGAATGCGCAAGCCGGGGATCGGCCCGATCC
390 ACAGGCGTGCGGGCACTCAGCCGGCCAGAGAGGAAGAATGCGCAAGCCGGGGATCGACCCGATCC
* * * * * * *
34855896 CCCATGCGTGCTACCGATCCTGCTGCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGG
455 CCCATGCGTCCTACCGATCCTACTGCCACAACCCTCGATACGGTCTAATCCTAGACTGGGAATGA
*
34855961 ACTCCATATGCTTAGACTGGGGATGAACTCCGCATGCCTAAGTCAACCCACGAAACGAGCGTGCG
520 ACTCCATATGCTAAGACTGGGGATGAACTCCGCATGCCTAAGTCAACCCACGAAACGAGCGTGCG
* ** *
34856026 GGTGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCTCG-GGATCGACCCGGTCCCCCCTACGTG
585 GGCGCTCAGCCGACCAGAGAGGCAGAATGCGCAAG-TCGAGGATCGACCCGGTCCCCCCTACGTG
34856090 TTGTCGATCCTGCTGCCGTAACCCTCGGTCTGGTTTGC
649 TTGTCGATCCTGCTGCCGTAACCCTCGGTCTGGTTTGC
* * * * *
34856128 TCTTAGATTGGGAATGAATTTCGTATGCTTAGACATGGAATGAACTCTGCATGCCTAAGCCAACC
1 TCTTAGACTGGGAATGAAATCCGTATGCTTAGACATGGAATGAACTCCGCATGCCTAAGCCAACA
* * * ** * * * *
34856193 CATGAAACGAACGTGCGGGCGCTCAGCC-GATCGGAGAGGTAGAATGTGCAAGCCGGGGATCAGC
66 CAAGAAACGAACGTACGGGCGCTCAGCCAG-CCAAAAAGGTAGAATGCGCAAGCCAGGGATC-GA
* * ** * *
34856257 CCA-ATCCC-CCTTACGTGCTGTCGATCCTGCTGTCGCAACCCTCGATC-CATTCTAATCTTAGA
129 CCAGATCCCACC-TACATGCTGTCCATCCTGCTACCACAACCCTCGATCTCA-TCCAATCTTAGA
* * * * *
34856319 CTGGGAATGTACTCCATATGCCTAAGTCAACCCA-TGAAACGAGCGTGC-AGGCGCTGAGCCA-G
192 CTGGGAATGAACTCCATATGCATAAGTCAACCCACT-AAACGAGCGTACGAGGCACTGA-ACAGG
* * * * * * *
34856381 CCGGAGAGGCATAATGCACAAGTCAGGGATCAGCCTGGTCCCCCTCTGCATGCTGCCGGTCCCGC
255 CCGAAGAGGCATAATGCACAAGCCAGGGATCACCCCGATCCCCCTATGCATGCTACCGGTCCCGC
* * ** *
34856446 TGCCACAACCCTTGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGTCTAAGCCAACCC
320 TGCCACAACCCTCGATCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCC
** * * * * *
34856511 ATGAAACAGGCGTGCGGGTGCTCAGTCGGTCAGAGAGGCAGAATGCGTAAGCTGGGGATCGACCC
385 ATGAAACAGGCGTGCGGGCACTCAGCCGGCCAGAGAGGAAGAATGCGCAAGCCGGGGATCGACCC
* * ** * * *
34856576 GATGCCCCTTGCGTCCTGTCGATCCTACTGTCATAACCCTCGGTACGGTCTAATCCTAGACTGGG
450 GATCCCCCATGCGTCCTACCGATCCTACTGCCACAACCCTCGATACGGTCTAATCCTAGACTGGG
* * * *
34856641 AATGAACTCCATATTCTAAGACTGTGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGC
515 AATGAACTCCATATGCTAAGACTGGGGATGAACTCCGCATGCCTAAGTCAACCCACGAAACGAGC
* *
34856706 GTGTGGGCGCTCAGCCGACCAGAGAGGCAGGATGCGCAAGTCGAGGATCGA
580 GTGCGGGCGCTCAGCCGACCAGAGAGGCAGAATGCGCAAGTCGAGGATCGA
34856757 ACGAGTGGTA
Statistics
Matches: 527, Mismatches: 95, Indels: 16
0.83 0.15 0.03
Matches are distributed among these distances:
684 3 0.01
685 332 0.63
686 78 0.15
687 110 0.21
688 4 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (686 bp):
TCTTAGACTGGGAATGAAATCCGTATGCTTAGACATGGAATGAACTCCGCATGCCTAAGCCAACA
CAAGAAACGAACGTACGGGCGCTCAGCCAGCCAAAAAGGTAGAATGCGCAAGCCAGGGATCGACC
AGATCCCACCTACATGCTGTCCATCCTGCTACCACAACCCTCGATCTCATCCAATCTTAGACTGG
GAATGAACTCCATATGCATAAGTCAACCCACTAAACGAGCGTACGAGGCACTGAACAGGCCGAAG
AGGCATAATGCACAAGCCAGGGATCACCCCGATCCCCCTATGCATGCTACCGGTCCCGCTGCCAC
AACCCTCGATCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAA
CAGGCGTGCGGGCACTCAGCCGGCCAGAGAGGAAGAATGCGCAAGCCGGGGATCGACCCGATCCC
CCATGCGTCCTACCGATCCTACTGCCACAACCCTCGATACGGTCTAATCCTAGACTGGGAATGAA
CTCCATATGCTAAGACTGGGGATGAACTCCGCATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
GCGCTCAGCCGACCAGAGAGGCAGAATGCGCAAGTCGAGGATCGACCCGGTCCCCCCTACGTGTT
GTCGATCCTGCTGCCGTAACCCTCGGTCTGGTTTGC
Found at i:34856569 original size:159 final size:158
Alignment explanation
Indices: 34856154--34856570 Score: 396
Period size: 159 Copynumber: 2.6 Consensus size: 158
34856144 AATTTCGTAT
* *
34856154 GCTTAGACATGGAATGAACTCTGC-ATGCCTAAGCCAACCCATGAAACGAACGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTC-CCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
* * * * * *
34856218 GCCGATCGGAGAGGTAGAATGTGCAAGCCGGGGATCAGCCCAATCCCCCTTACGTGCTGTCGATC
65 GCCGGTCGGAGAGGCAGAATGCGCAAGCTGGGGATCAGCCCAATCCCCCTTACATGCTGCCGATC
* * * *
34856283 CTGCTGTCGCAACCCTCGATCCATTCTAA
130 CCGCTGCCACAACCCTCGATCCATGCTAA
* * * * * *
34856312 TCTTAGAC-TGGGAATGTACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
* * * * * *** * *
34856376 GCCAGCCGGAGAGGCATAATGCACAAG-TCAGGGATCAGCCTGGTCCCCCTCTGCATGCTGCCGG
65 GCCGGTCGGAGAGGCAGAATGCGCAAGCT-GGGGATCAGCCCAATCCCCCT-TACATGCTGCCGA
* * **
34856440 TCCCGCTGCCACAACCCTTGGT-C-TGGCTGGG
128 TCCCGCTGCCACAACCCTCGATCCAT-GCT-AA
* *
34856471 GCTTAGACATGGAATGAACTCCCTATGTCTAAGCCAACCCATGAAAC-AGGCGTGCGGGTGCTCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGA-GCGTGCGGGCGCTCA
* * *
34856535 GTCGGTCAGAGAGGCAGAATGCGTAAGCTGGGGATC
65 GCCGGTCGGAGAGGCAGAATGCGCAAGCTGGGGATC
34856571 GACCCGATGC
Statistics
Matches: 202, Mismatches: 48, Indels: 17
0.76 0.18 0.06
Matches are distributed among these distances:
157 2 0.01
158 94 0.47
159 104 0.51
160 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
CCGGTCGGAGAGGCAGAATGCGCAAGCTGGGGATCAGCCCAATCCCCCTTACATGCTGCCGATCC
CGCTGCCACAACCCTCGATCCATGCTAA
Found at i:34857711 original size:159 final size:157
Alignment explanation
Indices: 34857350--34857850 Score: 587
Period size: 159 Copynumber: 3.2 Consensus size: 157
34857340 ATGGCTCAAA
* *
34857350 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCA
* * * * *
34857415 GCCGACCGAAGAGGTAGAATGCGCAAGCCAGGGATCGGT-CG-ACCCCCTACGTGCTGTCGATCC
66 GCCGACCGAAGAGGCAGAATGCGCAAGCCAGGGATTGGTCCGTCCCCCCTGCGTGCTGCCGATCC
* * * * *
34857478 TACTGTCGCAACCTTCAGTCTGGTTCG
131 TGCTGTCACAACCCTCGGTCCGGTTCG
** * * * * *
34857505 ATCTTAGACCAGGAATGAACTCCCTATGCATAAGTCAACACACGAAATGAGCGTACGGGCGCTGA
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCA
* * *
34857570 GCCGACCGAAGAGGCATAATGCACAAGCCAGGCATTGGTCCAGTCCCCCTCTGCGTGCTGCCGAT
66 GCCGACCGAAGAGGCAGAATGCGCAAGCCAGGGATTGGTCC-GTCCCCC-CTGCGTGCTGCCGAT
* *
34857635 CCTGCTGCCACAACCCTCGGTCCGGTTGG
129 CCTGCTGTCACAACCCTCGGTCCGGTTCG
** * * *
34857664 GGCTTAGACAT-GGAATGAACTCCGTATTCCTAAGCCAACCCATGAAATGAGCGTACGGGCCCTC
1 ATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTC
* * ** * *
34857728 AGCCGATCGGAGAGGCAGAATGCGCAAGCCAGGGATCT-ACCCGATCCCCCCTGGGTGCTGCGGA
65 AGCCGACCGAAGAGGCAGAATGCGCAAGCCAGGGAT-TGGTCCG-TCCCCCCTGCGTGCTGCCGA
* * *
34857792 TCTTGCTATCACAACCCTCGGTCCCGTTCG
128 TCCTGCTGTCACAACCCTCGGTCCGGTTCG
34857822 ATCTTAGACTGGGAATGAACTCCGTATGC
1 ATCTTAGACTGGGAATGAACTCCGTATGC
34857851 TTAGACGTGG
Statistics
Matches: 286, Mismatches: 52, Indels: 13
0.81 0.15 0.04
Matches are distributed among these distances:
155 90 0.31
156 1 0.00
157 2 0.01
158 66 0.23
159 126 0.44
160 1 0.00
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.19
Consensus pattern (157 bp):
ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCA
GCCGACCGAAGAGGCAGAATGCGCAAGCCAGGGATTGGTCCGTCCCCCCTGCGTGCTGCCGATCC
TGCTGTCACAACCCTCGGTCCGGTTCG
Found at i:34857853 original size:26 final size:26
Alignment explanation
Indices: 34857824--34857876 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34857814 CCCGTTCGAT
34857824 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACGT-GGAATGAACTCCGTATG
*
34857850 CTTAGACGTGGAATGAACTGCGTATG
1 CTTAGACGTGGAATGAACTCCGTATG
34857876 C
1 C
34857877 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACGTGGAATGAACTCCGTATG
Found at i:34857993 original size:184 final size:184
Alignment explanation
Indices: 34857665--34858034 Score: 501
Period size: 184 Copynumber: 2.0 Consensus size: 184
34857655 TCCGGTTGGG
* *
34857665 GCTTAGACATGGAATGAACTCCGTATTCCTAAGCCAACCCATGAAATGAGCGTACGGGCCCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTACGGGCCCTCAA
* ** * * *
34857730 CCGATCGGAGAGGCAGAATGCGCAAGCCAGGGATCTACCCGATCCCCCCTGGGTGCTGCGGATCT
66 CCGATCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCCTACGTGCTACCGATCC
* * * *
34857795 TGCTATCACAACCCTCGGTCCCGT-TCGATCTTAGACTGGGAATGAACTCCGTAT
131 TACTATCACAACCCTCGATCCGGTCT-AATCTTAGACTGGGAATGAACTCCGTAT
* * * *
34857849 GCTTAGACGTGGAATGAACTGCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTACGGGCCCTCAA
* * * * *
34857914 CCGGTCGGAGAGGCAGAATGTGCAAGCCGGGGATCGACTCGGTCCCCCCTACGTGCTACCGATCC
66 CCGATCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCCTACGTGCTACCGATCC
* *
34857979 TATTA-CTGCAACCCTCGATCCGGTCTAATCTTAGACTGGGAATGAACTCCGTAT
131 TACTATC-ACAACCCTCGATCCGGTCTAATCTTAGACTGGGAATGAACTCCGTAT
34858033 GC
1 GC
34858035 ATAAGTCAAC
Statistics
Matches: 161, Mismatches: 23, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
183 1 0.01
184 159 0.99
185 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTACGGGCCCTCAA
CCGATCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCCTACGTGCTACCGATCC
TACTATCACAACCCTCGATCCGGTCTAATCTTAGACTGGGAATGAACTCCGTAT
Found at i:34858212 original size:159 final size:156
Alignment explanation
Indices: 34857849--34858282 Score: 442
Period size: 159 Copynumber: 2.7 Consensus size: 156
34857839 AACTCCGTAT
* * *
34857849 GCTTAGACGTGGAATGAACTGCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAA
1 GCTTAGA-TTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTC-A
* * * * * *
34857914 CCGGTCGGAGAGGCAGAATGTGCAAGCCGGGGATCGACTCGGTCCCCCCTACGTGCTACCGATCC
64 GCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTACATGCTACCGATCC
* * ** *
34857979 TATTACTGCAACCCTCGATCCGGTCTAA
129 CACTACCACAACCCTCGATACGGTCTAA
* * * * *
34858007 TCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGC-
1 GCTTAGA-TTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCT-CA
* * * * *
34858071 GTCGATCGAAGAGGCATAATACGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCATGCTGCCGAT
64 G-CGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCC-CTACATGCTACCGAT
* * **
34858136 CCCGCTACCACAACCCTCGGTACGG-CTGGG
127 CCCACTACCACAACCCTCGATACGGTCT-AA
* * * *
34858166 GCTTAGATATGGATTGAACTCCCTATGCCTAAGCCAACCCATGAAAC-AGGCATGCGGACGCTCA
1 GCTTAGAT-TGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGA-GCGTGCGGGCGCTCA
* * *
34858230 GCCAGCCGGAGAGTCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTAC
64 GCGA-TCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTAC
34858283 GTGTTGCTGA
Statistics
Matches: 224, Mismatches: 44, Indels: 16
0.79 0.15 0.06
Matches are distributed among these distances:
158 104 0.46
159 120 0.54
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.17
Consensus pattern (156 bp):
GCTTAGATTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
GATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTACATGCTACCGATCCCA
CTACCACAACCCTCGATACGGTCTAA
Found at i:34858425 original size:501 final size:497
Alignment explanation
Indices: 34857352--34858427 Score: 1329
Period size: 501 Copynumber: 2.2 Consensus size: 497
34857342 GGCTCAAAAT
*
34857352 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGG-ATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * * **
34857417 CGACCGAAGAGGTAGAATGCGCAAGCCAGGGATCGGTCGACCCCCTACGTGCTGTCGATCCTACT
65 CGATCGGAGAGGCAGAATGCGCAAGCCAGGGATCGCTCGACCCCCTACGTGCTACCGATCCTACT
* * *
34857482 GTCGCAACCTTCAGTCTGGTTCGATCTTAGACCAGGAATGAACTCCCTATGCATAAGTCAACACA
130 GTCGCAACCCTCAGTCCGGTTCAATCTTAGACCAGGAATGAACTCCCTATGCATAAGTCAACACA
* * * *
34857547 CGAAATGAGCGTACGGGCGCTGAGCCGACCGAAGAGGCATAATGCACAAGCCAGGCATTGGTCCA
195 CGAAACGAGCGTACGGGCGCTGAGCCGACCGAAGAGGCATAATACACAAGCCAGGCATCGGCCCA
* * * * *
34857612 GTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTCGGTCCGGTTGGGGCTTAGACATGG
260 GTCCCCCTCTGCATGCTGCCGATCCCGCTACCACAACCCTCGGTACGGCTGGGGCTTAGACATGG
* * * * * *
34857677 AATGAACTCCGTATTCCTAAGCCAACCCATGAAATGAGCGTACGGGCCCTCAGCCGATCGGAGAG
325 AATGAACTCCCTATGCCTAAGCCAACCCATGAAAAGAGCATACGGACCCTCAGCCGACCGGAGAG
* ** *
34857742 GCAGAATGCGCAAGCCAGGGATCTACCCGATCCCCCCTGGGTGCTGCGGATCTTGCTATCACAAC
390 GCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCCTACGTGCTGCGGATCCTGCTATCACAAC
* * *
34857807 CCTCGGTCCCGTTCGATCTTAGACTGGGAATGAACTCCGTATG
455 CCTCGGTCCAGTCCAATCTTAGACTGGGAATGAACTCCGTATG
* * * *
34857850 CTTAGACGTGGAATGAACTGCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAAC
1 CTTAGAC-TGGGATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * *
34857915 CGGTCGGAGAGGCAGAATGTGCAAGCCGGGGATCGACTCGGTCCCCCCTACGTGCTACCGATCCT
65 CGATCGGAGAGGCAGAATGCGCAAGCCAGGGATCG-CTC-G-ACCCCCTACGTGCTACCGATCCT
** *
34857980 A-T-TACTGCAACCCTC-GATCCGG-TCTAATCTTAGACTGGGAATGAACTCCGTATGCATAAGT
127 ACTGT-C-GCAACCCTCAG-TCCGGTTC-AATCTTAGACCAGGAATGAACTCCCTATGCATAAGT
* * * * * * * *
34858041 CAACCCACGAAACGAGCGTGCGGGCGCTGCGTCGATCGAAGAGGCATAATACGCAAGCCGGGGAT
188 CAACACACGAAACGAGCGTACGGGCGCTGAGCCGACCGAAGAGGCATAATACACAAGCCAGGCAT
*
34858106 CGGCCCGGTCCCCCTCTGCATGCTGCCGATCCCGCTACCACAACCCTCGGTACGGCTGGGGCTTA
253 CGGCCCAGTCCCCCTCTGCATGCTGCCGATCCCGCTACCACAACCCTCGGTACGGCTGGGGCTTA
* * * *
34858171 GATATGGATTGAACTCCCTATGCCTAAGCCAACCCATGAAACAG-GCATGCGGACGCTCAGCC-A
318 GACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAA-AGAGCATACGGACCCTCAGCCGA
* * * * * *
34858234 GCCGGAGAGTCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTACGTGTTGCTGATCCTGC
382 -CCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCCTACGTGCTGCGGATCCTGC
* ** *
34858299 T-GCTGTAACCCTCGGTCCAGTCCAATCTTCGACTGGGAATGAACTCCGTATG
446 TATC-ACAACCCTCGGTCCAGTCCAATCTTAGACTGGGAATGAACTCCGTATG
* * * * * *
34858351 CTTAGACTAGGGAGGAACTCCATATGCCTAAGTCAACCCATGGAACGAGCGTGCGGGCACTTAGC
1 CTTAGACT-GGGATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
*
34858416 TGATCGGAGAGG
65 CGATCGGAGAGG
34858428 TCGATCGGAG
Statistics
Matches: 488, Mismatches: 78, Indels: 21
0.83 0.13 0.04
Matches are distributed among these distances:
498 85 0.17
499 6 0.01
500 9 0.02
501 387 0.79
502 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.19
Consensus pattern (497 bp):
CTTAGACTGGGATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCC
GATCGGAGAGGCAGAATGCGCAAGCCAGGGATCGCTCGACCCCCTACGTGCTACCGATCCTACTG
TCGCAACCCTCAGTCCGGTTCAATCTTAGACCAGGAATGAACTCCCTATGCATAAGTCAACACAC
GAAACGAGCGTACGGGCGCTGAGCCGACCGAAGAGGCATAATACACAAGCCAGGCATCGGCCCAG
TCCCCCTCTGCATGCTGCCGATCCCGCTACCACAACCCTCGGTACGGCTGGGGCTTAGACATGGA
ATGAACTCCCTATGCCTAAGCCAACCCATGAAAAGAGCATACGGACCCTCAGCCGACCGGAGAGG
CAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCCTACGTGCTGCGGATCCTGCTATCACAACC
CTCGGTCCAGTCCAATCTTAGACTGGGAATGAACTCCGTATG
Found at i:34858735 original size:26 final size:26
Alignment explanation
Indices: 34858706--34858758 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34858696 CCGGTCTGAT
34858706 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
34858732 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCCGTATG
34858758 C
1 C
34858759 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:34859426 original size:26 final size:26
Alignment explanation
Indices: 34859386--34859438 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34859376 TCGATCCGAT
*
34859386 CTTAGACTGGAAATGAACTCTGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
34859412 CTTAGACATGG-AATGAACTCCGTATG
1 CTTAGAC-TGGAAATGAACTCCGTATG
34859438 C
1 C
34859439 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:34859793 original size:681 final size:682
Alignment explanation
Indices: 34858501--34859813 Score: 1683
Period size: 681 Copynumber: 1.9 Consensus size: 682
34858491 TCCTGTTGCT
34858501 GGTCCTGCTACCACAACCCTCAGTCCAGCTAGGGCTTAGACATGGAATGAACTCCATATGCCTAA
1 GGTCCTGCTACCACAACCCTCAGTCCAGCTAGGGCTTAGACATGGAATGAACTCCATATGCCTAA
* * * * * *
34858566 GCCAACCCACGAAACAAACGTGCGGGCGCTCAGTCAGCCGGAGAGGCAGAATGCGTAAGCCGAGG
66 ACCAACCCACGAAACAAACGTGCGAGCACCCAGTCAGCCAGAGAGGCAAAATGCGTAAGCCGAGG
* * * ** * * * *
34858631 ATCGACCTGGTCCCACCATGCATGTTGTCGATCCTACTGCTGGTCCTGCTGCTGCAACCCTCGGT
131 ATCGACCTAGTCCCACCATGCAAGCTACCGATCCTACTGCTGGCCCTACTGCCGCAACCCTCGAT
* * * *
34858696 CCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCTGTATGCCT
196 CCGATCCGATCTTAGACTGGAAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCT
* * **
34858761 AAGCCAACCCACAAAATGAGCGTGCGGGCACTCAGCCGCCGGAGAAGTAGAATGCGTAAGCCGGG
261 AAGCCAACCCACAAAACGAGCATGCGGGCACTCAGCCGCCGGAGAAGTAGAATGCACAAGCCGGG
* *
34858826 GATCGGCCCTGTCCCCCCTGCGTGCTATAAATCCTGCTACCGCAACCCTCGGTCCGGTCCGATCT
326 GATCAGCCCTGTCCCCCCTGCGTGCTATAAATCCTACTACCGCAACCCTCGGTCCGGTCCGATCT
* *
34858891 TAGACTAGGAATGAACTCCATATGCCTAAGTCATCGCATGAAATAAGTGTGCGGGCACTGAGCTA
391 TAGACTAGGAATGAACTCCATATGCCTAAGTCATCGCATGAAACAAGCGTGCGGGCACTGAGCTA
* * *
34858956 CCGGAGAGGCATAATGCGCAAGCCGAAGATCGACCCGATCCCCCTCTACATGCTGTCGGTCCCGT
456 CCGGAGAGGCATAATGCACAAGCCGAAGATCGACCCGATCCCCCTCTACATGCTGTCAGTCCCGC
* * * * *
34859021 TGCCACAACCCTCAATCCGGTTGGGGCTTAGACATGAAATGAAGTTCCTATGCCTAAGCTAACCC
521 TGCCACAACCCTCAATCCGGCTGGGGCTTAGACATGAAATGAACTCCCTATCCCTAAGCCAACCC
* *
34859086 ACGAAACGGGCGTACGGGCACTCAGCCTGTCGGAGAGGCAGAATGCGTAAACCGAAGATCGACCT
586 ACGAAACGGGCGTACGGGCACTCAGCCAGCCGGAGAGGCAGAATGCGTAAACCGAAGATCGACCT
34859151 GGTCCCCCCTGCGTGCTGTCGATCCCGCTATC
651 GGTCCCCCCTGCGTGCTGTCGATCCCGCTATC
* * * * * *
34859183 GGTCCTGCTGCCACAACCCTCGGTCCGGTTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAA
1 GGTCCTGCTACCACAACCCTCAGTCCAGCTAGGGCTTAGACATGGAATGAACTCCATATGCCTAA
* ** * * * * *
34859248 ACCAACCCATGAAATGAGCGTGCGAGCACCCAG-CTGGTCAGAGAGGCAAAATGCGTAAGTCGGG
66 ACCAACCCACGAAACAAACGTGCGAGCACCCAGTC-AGCCAGAGAGGCAAAATGCGTAAGCCGAG
* * *
34859312 GATTGATCC-AGT-CC-CCTTGCAAGCTACCGATCCTGCTGCTGGCCCTACTGCCGCAACCCTCG
130 GATCGA-CCTAGTCCCACCATGCAAGCTACCGATCCTACTGCTGGCCCTACTGCCGCAACCCTCG
* *
34859374 ATTCGATCCGATCTTAGACTGGAAATGAACTCTGTATGCTTAGACATGGAATGAACTCCGTATGC
194 ATCCGATCCGATCTTAGACTGGAAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGC
** * * *
34859439 CTAAGCCAACCCATGAAACGAGCATGCGGGC-GTGCAGCCGGTCGGAGAGGTAGAATGCACAAGC
259 CTAAGCCAACCCACAAAACGAGCATGCGGGCACT-CAGCC-GCCGGAGAAGTAGAATGCACAAGC
* * ** * * * * *
34859503 CGGGGATCAG-TCTGATCCCCCCTGCGTGCTGTCGATCCTACTATCGTAACCCTTGGTCTGGTCT
322 CGGGGATCAGCCCTG-TCCCCCCTGCGTGCTATAAATCCTACTACCGCAACCCTCGGTCCGGTCC
* * * **
34859567 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA-CGCCATGAAACGAGCGTGCGGGCGTT
386 GATCTTAGACTAGGAATGAACTCCATATGCCTAAGTCATCG-CATGAAACAAGCGTGCGGGCACT
* * * * * *
34859631 GAGCTAGCTGGAGAGGCATAATGCACAAGCCGAGGATTGACCTGATCCCTCTCTACGTGCTGTCA
450 GAGCTA-CCGGAGAGGCATAATGCACAAGCCGAAGATCGACCCGATCCCCCTCTACATGCTGTCA
** *
34859696 GTCCCGCTGCCACAATCTTTGAA-CCGGCT-GGGCTTAGACAT-AGAATGAACTCCCTATCCCTA
514 GTCCCGCTGCCACAA-CCCTCAATCCGGCTGGGGCTTAGACATGA-AATGAACTCCCTATCCCTA
* * * *
34859758 AGCCAACCCATGAAACGGGCGTGCGGTCGCTCAGCCAGCCGGAGAGGCAGAATGCG
577 AGCCAACCCACGAAACGGGCGTACGGGCACTCAGCCAGCCGGAGAGGCAGAATGCG
34859814 CAAGCCGGGG
Statistics
Matches: 534, Mismatches: 88, Indels: 19
0.83 0.14 0.03
Matches are distributed among these distances:
679 1 0.00
680 135 0.25
681 209 0.39
682 183 0.34
683 6 0.01
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.20
Consensus pattern (682 bp):
GGTCCTGCTACCACAACCCTCAGTCCAGCTAGGGCTTAGACATGGAATGAACTCCATATGCCTAA
ACCAACCCACGAAACAAACGTGCGAGCACCCAGTCAGCCAGAGAGGCAAAATGCGTAAGCCGAGG
ATCGACCTAGTCCCACCATGCAAGCTACCGATCCTACTGCTGGCCCTACTGCCGCAACCCTCGAT
CCGATCCGATCTTAGACTGGAAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCT
AAGCCAACCCACAAAACGAGCATGCGGGCACTCAGCCGCCGGAGAAGTAGAATGCACAAGCCGGG
GATCAGCCCTGTCCCCCCTGCGTGCTATAAATCCTACTACCGCAACCCTCGGTCCGGTCCGATCT
TAGACTAGGAATGAACTCCATATGCCTAAGTCATCGCATGAAACAAGCGTGCGGGCACTGAGCTA
CCGGAGAGGCATAATGCACAAGCCGAAGATCGACCCGATCCCCCTCTACATGCTGTCAGTCCCGC
TGCCACAACCCTCAATCCGGCTGGGGCTTAGACATGAAATGAACTCCCTATCCCTAAGCCAACCC
ACGAAACGGGCGTACGGGCACTCAGCCAGCCGGAGAGGCAGAATGCGTAAACCGAAGATCGACCT
GGTCCCCCCTGCGTGCTGTCGATCCCGCTATC
Found at i:34859890 original size:158 final size:156
Alignment explanation
Indices: 34859412--34859912 Score: 494
Period size: 158 Copynumber: 3.2 Consensus size: 156
34859402 ACTCTGTATG
*
34859412 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCGTGCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGT-CAG
* * * * * *
34859476 CCGGTCGGAGAGGTAGAATGCACAAGCCGGGGATCAGTCTGATCCCCCCTGCGTGCTGTCGATCC
64 CCAGCCGGAGAGGCAGAATGCACAAGCCGGGGATCTGTCTGATCCCTCCTACGTGCTGTCGATCC
* ** ** * *
34859541 TACTATCGTAACCCTTGGTCTGGTCTGAT
129 TGCTGCCACAACCCTTAGTC-CGTCTGAT
* *
34859570 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTC-ACGCCATGAAACGAGCGTGCGGGCGTTGAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC-CCATGAAACGAGCGTGCGGGCG-TCAG
* * * * *
34859634 CTAGCTGGAGAGGCATAATGCACAAGCCGAGGAT-TGACCTGATCCCTCTCTACGTGCTGTC-AG
64 CCAGCCGGAGAGGCAGAATGCACAAGCCGGGGATCTG-TCTGATCCCTC-CTACGTGCTGTCGA-
* * * * * **
34859697 TCCCGCTGCCACAA-TCTTTGAACCGGCTGGG
126 TCCTGCTGCCACAACCCTTAG-TCCGTCTGAT
* * * * *
34859728 CTTAGACAT-AGAATGAACTCCCTATCCCTAAGCCAACCCATGAAACGGGCGTGCGGTCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCG-TCAG
* **
34859792 CCAGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCTGT-TCGATCCCTCCTACGTGCTACCGATC
64 CCAGCCGGAGAGGCAGAATGCACAAGCCGGGGATCTGTCT-GATCCCTCCTACGTGCTGTCGATC
*
34859856 CTGCTGCCACAACCCTTAGTCCAATCTGAT
128 CTGCTGCCACAACCCTTAGTCC-GTCTGAT
*
34859886 CTTAGACTGGGAATGAACTCCATATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
34859913 TTAGACTGGG
Statistics
Matches: 274, Mismatches: 54, Indels: 30
0.77 0.15 0.08
Matches are distributed among these distances:
157 31 0.11
158 217 0.79
159 26 0.09
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (156 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGTCAGCC
AGCCGGAGAGGCAGAATGCACAAGCCGGGGATCTGTCTGATCCCTCCTACGTGCTGTCGATCCTG
CTGCCACAACCCTTAGTCCGTCTGAT
Found at i:34859915 original size:26 final size:26
Alignment explanation
Indices: 34859886--34859938 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34859876 CCAATCTGAT
34859886 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
34859912 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
34859938 C
1 C
34859939 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:34860523 original size:11 final size:11
Alignment explanation
Indices: 34860507--34860535 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
34860497 TTAGACTCTT
34860507 CGATGATGCTC
1 CGATGATGCTC
34860518 CGATGATGCTC
1 CGATGATGCTC
34860529 CGATGAT
1 CGATGAT
34860536 AGTGCCCCGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.21, C:0.24, G:0.28, T:0.28
Consensus pattern (11 bp):
CGATGATGCTC
Found at i:34860877 original size:26 final size:26
Alignment explanation
Indices: 34860848--34860903 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
34860838 CCAATCCGAT
34860848 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
34860874 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
34860900 CTTA
1 CTTA
34860904 AGCCAACCCA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 27 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:34861378 original size:26 final size:26
Alignment explanation
Indices: 34861349--34861401 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34861339 CCTGTCCAAT
34861349 CTTAGACTGCGAATGAACTCTGTATG
1 CTTAGACTGCGAATGAACTCTGTATG
* *
34861375 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGCGAATGAACTCTGTATG
34861401 C
1 C
34861402 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGCGAATGAACTCTGTATG
Found at i:34862620 original size:26 final size:26
Alignment explanation
Indices: 34862570--34862622 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
34862560 CCGGTCTGAT
* *
34862570 CTTAGACTGGGAATGAATTATGTATG
1 CTTAGACTGGGAATGAACTACGTATG
* *
34862596 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTACGTATG
34862622 C
1 C
34862623 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:34862989 original size:26 final size:26
Alignment explanation
Indices: 34862939--34862989 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
34862929 TGATCTGATC
**
34862939 TTAGACTGGGAATGAACTCTGTATGA
1 TTAGACTGGGAATGAACTCCATATGA
*
34862965 TTAGACTGGGGATGAACTCCATATG
1 TTAGACTGGGAATGAACTCCATATG
34862990 CCTAAGTCAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGA
Found at i:34863262 original size:368 final size:366
Alignment explanation
Indices: 34862384--34863277 Score: 1001
Period size: 368 Copynumber: 2.4 Consensus size: 366
34862374 TGTCGATCCC
* *
34862384 GCTGCCACAACCCTCGA-TCTGGCTGGGGCTTAGACATGGAATGAACTCCTTATGCCTAAGGCAA
1 GCTGCCACAACCCTCGATTC-GGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
34862448 CCCACAAAATGGGCGTGCGGGCACTCAATCGGCTGGAGAGGCAGAATGAGTAAGCCGAGGATTGA
65 CCCACAAAATGAGCGTGCGGGCGCTCAATCGGTTGGAGAGGCAAAATGAGTAAGCCGGGGATTGA
* * * *
34862513 CCCGGTCCCCCTTGTGTGCTGCTGATCCTACTACCGCAACTCTCAGTCCGGTCTGATCTTAGACT
130 -CCGGTCCCCC-TGCGTGCTGCTGATCCTACTACCACAACCCTCAGTCCGATCTGATCTTAGACT
* * *
34862578 GGGAATGAATTATGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATG
193 GGGAATGAACTATGTATGATTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCACGAAATG
* * * * *
34862643 AGCGTGCAGATGCTCAGTCGGTCGAAAAGATCGACCGGAGAGGCATAATGCGCAAGCCGAGGATT
258 AGCGTGCAGATGCTCAGTCGATCGAAAAGATCGACCAGAGAGGCATAATACGCAAGCAGAGGATC
* * *
34862708 AGCTCGATACCCCTCTACGTGCTGTCAATCCCGTTGCAGGTCCT
323 AGCCCGATACCCCTCTACGTGCTGCCAATCCCGCTGCAGGTCCT
* * * * * *
34862752 GTTGCCACAACCCTTGGTCCAGCTGGGGCTTAGGCATGGAATGAACTCCGTATGCCTAAGCCAAC
1 GCTGCCACAACCCTCGATTCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * * *
34862817 CCACAAAACGAACGTGCGGGCGCTCAACCGGTTGGAGTGGCAAAATGCA-CAAGCCGGGGATCGG
66 CCACAAAATGAGCGTGCGGGCGCTCAATCGGTTGGAGAGGCAAAATG-AGTAAGCCGGGGAT-TG
* * * * * * * **
34862881 CCCGATCCCCCCTGCGTGCTG-TCGATCCTGCTGCTACACCCCTCGGTTTGATCTGATCTTAGAC
129 ACCGGT-CCCCCTGCGTGCTGCT-GATCCTACTACCACAACCCTCAGTCCGATCTGATCTTAGAC
* * *
34862945 TGGGAATGAACTCTGTATGATTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCATGGAAT
192 TGGGAATGAACTATGTATGATTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCACGAAAT
* * * * * * * *
34863010 GGGCGTGCGGGTGCTCAGTCGATCGGAGAGGTC-AGTCAGAGAGGCATAATACGCCAA-CAGGGG
257 GAGCGTGCAGATGCTCAGTCGATCGAAAAGATCGA-CCAGAGAGGCATAATACG-CAAGCAGAGG
* * *
34863073 ATCAGCCC-AGTCCCCCTCTACGTGCTGCCAATCTCGCTGCCA-GTCTT
320 ATCAGCCCGA-TACCCCTCTACGTGCTGCCAATCCCGCTG-CAGGTCCT
34863120 GCTGCCACAACCCTCGATTCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
1 GCTGCCACAACCCTCGATTCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
** * * ** * * **
34863185 CCATGAAATGAGCGTGCGGGTGCTCAGTCAATTGGAAAGGCAAAATGTGTAAGTTGGGGATTGAC
66 CCACAAAATGAGCGTGCGGGCGCTCAATCGGTTGGAGAGGCAAAATGAGTAAGCCGGGGATTGAC
* *
34863250 TCGGCTCCCCCTGCTTGCTACTGATCCT
131 -CGG-TCCCCCTGCGTGCTGCTGATCCT
34863278 GTTGTTGGTC
Statistics
Matches: 430, Mismatches: 83, Indels: 26
0.80 0.15 0.05
Matches are distributed among these distances:
367 5 0.01
368 410 0.95
369 15 0.03
ACGTcount: A:0.23, C:0.27, G:0.27, T:0.22
Consensus pattern (366 bp):
GCTGCCACAACCCTCGATTCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
CCACAAAATGAGCGTGCGGGCGCTCAATCGGTTGGAGAGGCAAAATGAGTAAGCCGGGGATTGAC
CGGTCCCCCTGCGTGCTGCTGATCCTACTACCACAACCCTCAGTCCGATCTGATCTTAGACTGGG
AATGAACTATGTATGATTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCACGAAATGAGC
GTGCAGATGCTCAGTCGATCGAAAAGATCGACCAGAGAGGCATAATACGCAAGCAGAGGATCAGC
CCGATACCCCTCTACGTGCTGCCAATCCCGCTGCAGGTCCT
Found at i:34863578 original size:158 final size:159
Alignment explanation
Indices: 34863316--34863698 Score: 353
Period size: 158 Copynumber: 2.4 Consensus size: 159
34863306 GTCGGGTCCG
* * * * * * **
34863316 ATCTTAGACTAGGAATGAACTCCGTATGCTTATGCCAACCAACGAAATGAGCGTACGGGTATTCA
1 ATCTTAGACTAGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTATGGGCGTTCA
* * * * ** * * * *
34863381 GCCAGTTGGAGAGGTAGAATGTGTAAGCTAGGGACCGGCCCGGTACC-CC-CTGCGTGCGGTCGA
66 GCCAGTCGAAAAGGCAGAATACGAAAGCCAGGGACCGGCCAGAT-CCTCCTCTGCGTGCGGTCGA
* * *
34863444 ACCTGCTATC-GCAACCCTCGGTCC-GATTCA
130 ACCTGCTA-CAACAACCCTCGATCCAG-CTCA
* * *
34863474 ATCTTAGACTAGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGTTGA
1 ATCTTAGACTAGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTATGGGCGTTCA
* * * * * **
34863539 GCCAGTCGAAAAGGCATAATACGAAAGCCCGGGATCGGCCAGATCCTCCTTTGCGTGCTGTCGGT
66 GCCAGTCGAAAAGGCAGAATACGAAAGCCAGGGACCGGCCAGATCCTCCTCTGCGTGCGGTCGAA
**
34863604 CCTGCTACAACAACCCTCGATCCAGCTGG
131 CCTGCTACAACAACCCTCGATCCAGCTCA
** * * *
34863633 GGCTTAGACATA-GAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTATGGGCGCTC
1 ATCTTAGAC-TAGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTATGGGCGTTC
34863697 AG
65 AG
34863699 TCGGCTTAAG
Statistics
Matches: 179, Mismatches: 41, Indels: 9
0.78 0.18 0.04
Matches are distributed among these distances:
157 2 0.01
158 88 0.49
159 86 0.48
160 3 0.02
ACGTcount: A:0.26, C:0.28, G:0.26, T:0.20
Consensus pattern (159 bp):
ATCTTAGACTAGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTATGGGCGTTCA
GCCAGTCGAAAAGGCAGAATACGAAAGCCAGGGACCGGCCAGATCCTCCTCTGCGTGCGGTCGAA
CCTGCTACAACAACCCTCGATCCAGCTCA
Found at i:34864771 original size:26 final size:26
Alignment explanation
Indices: 34864735--34864787 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
34864725 CCAGTCTGAT
34864735 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
34864761 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
34864787 C
1 C
34864788 CTAAGTCCAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34865075 original size:170 final size:170
Alignment explanation
Indices: 34864760--34865128 Score: 401
Period size: 170 Copynumber: 2.2 Consensus size: 170
34864750 AACTCCGTAT
*
34864760 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCCACCCACGAAACGAGCGTACGGGCGCTCAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCCACCCACGAAACGAGCGTACGGGCGCTCAG
* * * * * * * *
34864825 CCGATCGGAGAGGCATAATGCGTAAGTCAGGGATCTGTCTGGTCCCCCTTTGCATGCTGCCAATC
66 CCAACCGGAGAGGCAGAATGCATAAGACAGAGATCGGTCTGGTCCCCCTTTGCATGCTACCAATC
34864890 CCGCTGTCAGTCCTGCTGCCACAACCCTCGGTCCGGCTAC
131 CCGCTGTCAGTCCTGCTGCCACAACCCTCGGTCCGGCTAC
* * * *
34864930 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAG-CCAACCCATGAAATGAGCG-AGCGGGTGTT
1 GCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCC-ACCCACGAAACGAGCGTA-CGGGCGCT
* * *
34864992 CAGTCAACCGGAGAGGTAGAATGCATAAGAC-GAAGATCGGTCTGGTGCCCCC-TTGCGTGCTAC
63 CAGCCAACCGGAGAGGCAGAATGCATAAGACAG-AGATCGGTCTGGT-CCCCCTTTGCATGCTAC
* * ** * * *
34865055 CGATCCTGCTGT-AGGTCCTGCTGCCGTAACCCTCGGT-CTGATCC
126 CAATCCCGCTGTCA-GTCCTGCTGCCACAACCCTCGGTCCGGCTAC
*
34865099 GATCTTAGATTGGGAATGAACTCCGTATGC
1 G--CTTAGACTGGGAATGAACTCCGTATGC
34865129 TTGGACATGG
Statistics
Matches: 166, Mismatches: 24, Indels: 17
0.80 0.12 0.08
Matches are distributed among these distances:
169 10 0.06
170 126 0.76
171 30 0.18
ACGTcount: A:0.22, C:0.29, G:0.27, T:0.22
Consensus pattern (170 bp):
GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCCACCCACGAAACGAGCGTACGGGCGCTCAG
CCAACCGGAGAGGCAGAATGCATAAGACAGAGATCGGTCTGGTCCCCCTTTGCATGCTACCAATC
CCGCTGTCAGTCCTGCTGCCACAACCCTCGGTCCGGCTAC
Found at i:34866379 original size:26 final size:26
Alignment explanation
Indices: 34866337--34866389 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34866327 GGCTCAAAAT
*
34866337 CTTAGACTAGGATTGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
34866363 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
34866389 C
1 C
34866390 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:34866706 original size:159 final size:157
Alignment explanation
Indices: 34866362--34866862 Score: 465
Period size: 158 Copynumber: 3.2 Consensus size: 157
34866352 AACTCCGTAT
**
34866362 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCAAGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAG-CAACCCACGAAATGAGCAAGCGGGCACTCAG
* ** * * * * *
34866427 CCGTTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATTCCCCCTGTATGCTGTCGATCC
65 CAGGCCGAAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGAGTCCCCCTGCATGCTGCCGATCC
** *
34866492 TGCTACTGCAACCCTCGGTCCGATCTGA
130 TGCTACCACAACCCTCGGTCCGAGCTGA
* * * * *
34866520 TCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGCATGCGGGCATTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAG-CAACCCACGAAATGAGCAAGCGGGCACTCA
* * * *
34866584 GCAGGCCGAAGAGGCATAATGCGTAAGCCGAGGATCGA-CCTAGTCCCACTCTGCATGCTGCCGG
64 GCAGGCCGAAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGAGTCCC-C-CTGCATGCTGCCGA
* *
34866648 TCCTGCTGCCACAACCCTCGGTCCG-GCTAGG
127 TCCTGCTACCACAACCCTCGGTCCGAGCT-GA
* * * * ** **
34866679 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCAAACCCACAAAACGGGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGC-AACCCACGAAATGAGCAAGCGGGCACTCAG
* * * ** * *
34866744 CCGGCCGGAGAGGCAGAATGCGCAAGCC-AGGGATCGGCCCG-GTCCCCCCTGTGTGTTGTCGAT
65 CAGGCCGAAGAGGCAGAATGCGCAAGCCGA-GGATCGACCCGAGT-CCCCCTGCATGCTGCCGAT
* * * * *
34866807 CCTGCTGCCGCAACCCTCGATCTGATCTGA
128 CCTGCTACCACAACCCTCGGTCCGAGCTGA
*
34866837 TCTTAGAC-TGGGAATGAACTCCGTAT
1 GCTTAGACAT-GGAATGAACTCCGTAT
34866863 ACTTAGACTG
Statistics
Matches: 278, Mismatches: 54, Indels: 22
0.79 0.15 0.06
Matches are distributed among these distances:
157 9 0.03
158 144 0.52
159 119 0.43
160 6 0.02
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCAACCCACGAAATGAGCAAGCGGGCACTCAGC
AGGCCGAAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGAGTCCCCCTGCATGCTGCCGATCCT
GCTACCACAACCCTCGGTCCGAGCTGA
Found at i:34866874 original size:26 final size:26
Alignment explanation
Indices: 34866838--34866888 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
34866828 CTGATCTGAT
34866838 CTTAGACTGGGAATGAACTCCGTATA
1 CTTAGACTGGGAATGAACTCCGTATA
*
34866864 CTTAGACTGGGGATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
34866889 GCCTAAGTCC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATA
Found at i:34867178 original size:171 final size:171
Alignment explanation
Indices: 34866876--34867198 Score: 404
Period size: 171 Copynumber: 1.9 Consensus size: 171
34866866 TAGACTGGGG
* *
34866876 ATGAACTCCGTATGCCTAAGTCCACCCATGAAACGAGCGTACGGGTGCTCAGTCGATCGGAGAGG
1 ATGAACTCCGTATGCCTAAGTCCACCCATGAAACGAGCGTACGGGTGCTCAGTCAACCGGAGAGG
* * * * * * * *
34866941 CATAATGCGCAAGCCGGGGATCAGTCTGGTCCCCCTTTACGTGCTGCCAATCTCGTTGTCGGTCC
66 CAGAATGCGCAAGACGAGGATCAGCCCGGTCCCCCTTTACATGCTACCAATCTCGCTGTCGGTCC
34867006 TGCTGCCACAACCCTCAGTCCGGCTGGGGCTTAGACATGGA
131 TGCTGCCACAACCCTCAGTCCGGCTGGGGCTTAGACATGGA
*
34867047 ATGAACTCCGTATGCCTAAG-CCAACCCATGAAATGAGCG-AGCGGGTGCTCAGTCAACCGGAGA
1 ATGAACTCCGTATGCCTAAGTCC-ACCCATGAAACGAGCGTA-CGGGTGCTCAGTCAACCGGAGA
* * * *
34867110 GGCAGAATGCGCAAGACGAGGATCGGCCCGGT-GCCCTCTTGCATGCTACCGATC-CTGCTG-CA
64 GGCAGAATGCGCAAGACGAGGATCAGCCCGGTCCCCCT-TTACATGCTACCAATCTC-GCTGTC-
** *
34867172 GGTCCTGCTGCCGTAACCCTCGGTCCG
126 GGTCCTGCTGCCACAACCCTCAGTCCG
34867199 ATCTGATCTT
Statistics
Matches: 129, Mismatches: 18, Indels: 10
0.82 0.11 0.06
Matches are distributed among these distances:
170 9 0.07
171 120 0.93
ACGTcount: A:0.21, C:0.31, G:0.28, T:0.20
Consensus pattern (171 bp):
ATGAACTCCGTATGCCTAAGTCCACCCATGAAACGAGCGTACGGGTGCTCAGTCAACCGGAGAGG
CAGAATGCGCAAGACGAGGATCAGCCCGGTCCCCCTTTACATGCTACCAATCTCGCTGTCGGTCC
TGCTGCCACAACCCTCAGTCCGGCTGGGGCTTAGACATGGA
Found at i:34867221 original size:171 final size:171
Alignment explanation
Indices: 34866864--34867231 Score: 401
Period size: 171 Copynumber: 2.2 Consensus size: 171
34866854 ACTCCGTATA
* *
34866864 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCCACCCATGAAACGAGCGTACGGGTGCTCAGT
1 CTTAGAATGGGAATGAACTCCGTATGCCTAAGTCCACCCATGAAACGAGCGTACGGGTGCTCAGT
* * * * * * * * *
34866929 CGATCGGAGAGGCATAATGCGCAAGCCGGGGATCAGTCTGGTCCCCCTTTACGTGCTGCCAATCT
66 CAACCGGAGAGGCAGAATGCGCAAGACGAGGATCAGCCCGGTCCCCCTTTACATGCTACCAATCT
* *
34866994 CGTTGTCGGTCCTGCTGCCACAACCCTCAGTCCGGCTGGGG
131 CGCTGTCGGTCCTGCTGCCACAACCCTCAGTCCGGCTGGAG
*
34867035 CTTAGACAT-GGAATGAACTCCGTATGCCTAAG-CCAACCCATGAAATGAGCG-AGCGGGTGCTC
1 CTTAGA-ATGGGAATGAACTCCGTATGCCTAAGTCC-ACCCATGAAACGAGCGTA-CGGGTGCTC
* * * *
34867097 AGTCAACCGGAGAGGCAGAATGCGCAAGACGAGGATCGGCCCGGT-GCCCTCTTGCATGCTACCG
63 AGTCAACCGGAGAGGCAGAATGCGCAAGACGAGGATCAGCCCGGTCCCCCT-TTACATGCTACCA
** * * *
34867161 ATC-CTGCTG-CAGGTCCTGCTGCCGTAACCCTCGGTCCGATCT-GAT
127 ATCTC-GCTGTC-GGTCCTGCTGCCACAACCCTCAGTCCG-GCTGGAG
*
34867206 CTTAGATTGGGAATGAACT-CGTATGC
1 CTTAGAATGGGAATGAACTCCGTATGC
34867232 TTGGACATGG
Statistics
Matches: 165, Mismatches: 24, Indels: 17
0.80 0.12 0.08
Matches are distributed among these distances:
170 17 0.10
171 145 0.88
172 3 0.02
ACGTcount: A:0.21, C:0.29, G:0.29, T:0.21
Consensus pattern (171 bp):
CTTAGAATGGGAATGAACTCCGTATGCCTAAGTCCACCCATGAAACGAGCGTACGGGTGCTCAGT
CAACCGGAGAGGCAGAATGCGCAAGACGAGGATCAGCCCGGTCCCCCTTTACATGCTACCAATCT
CGCTGTCGGTCCTGCTGCCACAACCCTCAGTCCGGCTGGAG
Found at i:34869990 original size:24 final size:24
Alignment explanation
Indices: 34869963--34870008 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
34869953 CTGATAGAAA
34869963 TGAGTCAGGATATATATACTACAG
1 TGAGTCAGGATATATATACTACAG
34869987 TGAGTCAGGATATATATACTAC
1 TGAGTCAGGATATATATACTAC
34870009 TGATGAGTAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.37, C:0.13, G:0.20, T:0.30
Consensus pattern (24 bp):
TGAGTCAGGATATATATACTACAG
Found at i:34872882 original size:196 final size:195
Alignment explanation
Indices: 34872377--34872896 Score: 657
Period size: 196 Copynumber: 2.6 Consensus size: 195
34872367 TTCGCTGGGG
* ** *
34872377 GCTTAGGACATGGAATGAACTCCGTATGCCTAAGGCCAA-CCATGAAATTAGCGTGTGGGCGCTC
1 GCTTA-GACATGGAATGAACTCCGTATGCCTAA-GCCAACCCACGAAACAAGCGTGCGGGCGCTC
* * * *
34872441 AGCCGGCCAGAGAGGCAGAATGCGCAAGCCGGGGATGGCCCTAGTCCCCCCTGCGTGCTATCGAT
64 AACCGGCCGGAGAGGCAGAATGCGAAAGCCGGGGATGGCCC-AGTCCCCCCTGCGTGCTGTCGAT
* * * *
34872506 CTTGCTGCTGGTCTTACTGCCAAAACCCTCAGTCCGATTTGATCTTAGATTGAGAATGAACTCTA
128 CCTGCTGCTGGTCCTACTGCCAAAACCCTCAGTCCGATCTGATCTTAGATTGAGAATGAACTCCA
34872571 TAT
193 TAT
* * *
34872574 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCACTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAA
* * * * * * *
34872639 CCGACTGGAGAGGCAGAATGCGTAAGCCGGGGATGGCCTCGGTCCCCCTTGCATGTTGTCGATCC
66 CCGGCCGGAGAGGCAGAATGCGAAAGCCGGGGATGGCC-CAGTCCCCCCTGCGTGCTGTCGATCC
* ** * *
34872704 TGCTGCTGGTCCTGCTGCCGCAACCCTC-GATCCGGTCTGATCTTAGATTGGGAATGAACTCCAT
130 TGCTGCTGGTCCTACTGCCAAAACCCTCAG-TCCGATCTGATCTTAGATTGAGAATGAACTCCAT
34872768 AT
194 AT
*
34872770 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGACGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAA
* * ** * **
34872835 CTGGCCGGAGAGGCAGAATACGAAAGTTGTGGATCAACCCAGTCCCCCCTGCGTGCTGTCGA
66 CCGGCCGGAGAGGCAGAATGCGAAAGCCGGGGAT-GGCCCAGTCCCCCCTGCGTGCTGTCGA
34872897 ACCTACTCCT
Statistics
Matches: 276, Mismatches: 43, Indels: 9
0.84 0.13 0.03
Matches are distributed among these distances:
195 6 0.02
196 262 0.95
197 8 0.03
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (195 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAA
CCGGCCGGAGAGGCAGAATGCGAAAGCCGGGGATGGCCCAGTCCCCCCTGCGTGCTGTCGATCCT
GCTGCTGGTCCTACTGCCAAAACCCTCAGTCCGATCTGATCTTAGATTGAGAATGAACTCCATAT
Found at i:34873142 original size:159 final size:158
Alignment explanation
Indices: 34872770--34873266 Score: 372
Period size: 158 Copynumber: 3.1 Consensus size: 158
34872760 AACTCCATAT
* * *
34872770 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACA-AGCGTGCGGACGCTC
1 GCTTAGAC-TGGGAATGAACTCCCTACGCCTAAGCCAACCCACGAAA-AGAGCGTGCGGGCGCTC
* ** ** ** * *
34872833 AACTGGCCGGAGAGGCAGAATACGA--AAGTTGTGG-ATCAACCC-AGTCCCCCCTGCGTGCTGT
64 AGCCAGCCGGAGAGGCAG-A-ACGAGCAAGCCG-GGCATCGGCCCGA-TCCCCCTTGCGTGCTGC
* ** * * * * *
34872894 CGAACCTACTCCTGA-AACCCTCGGTCTGATCCGA
125 CGATCCCGCT-GTCACAACCCTCGATCTGGTCTGA
* * * * * * *
34872928 TCTTGGACTGGGAATTAACTCCTTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTGAG
1 GCTTAGACTGGGAATGAACTCCCTACGCCTAAGCCAACCCACGAAAAGAGCGTGCGGGCGCTCAG
* * *
34872993 CCAGCCGGAGAGGCATAACGCA-CTAA-CCGAGG-ATCGGCCTGATCCCCCTCTGCGTGCTTCC-
66 CCAGCCGGAGAGGCAGAACG-AGC-AAGCCG-GGCATCGGCCCGATCCCCCT-TGCGTGCTGCCG
*
34873054 AGTCCCGCTGTCACAACCCTCGATCTGG-CTGGG
127 A-TCCCGCTGTCACAACCCTCGATCTGGTCT-GA
* * * * * *
34873087 GCTTAGGCTTGGAATGAACTCCCTACGCCTACGCCAACCCATGAAATAGA-TGTGCGGGTGCTCA
1 GCTTAGACTGGGAATGAACTCCCTACGCCTAAGCCAACCCACGAAA-AGAGCGTGCGGGCGCTCA
* * * *
34873151 GCCGGTCGGAGAGGCAGAATGAGCAAGCCGGGCATCGGCCCGGTCCCCCTTGCGTGCTGCCGATC
65 GCCAGCCGGAGAGGCAGAACGAGCAAGCCGGGCATCGGCCCGATCCCCCTTGCGTGCTGCCGATC
* **
34873216 CTGCTGTCGTAACCCTCGATCTGGTCTGA
130 CCGCTGTCACAACCCTCGATCTGGTCTGA
*
34873245 TCTTAGACTGGGAATGAACTCC
1 GCTTAGACTGGGAATGAACTCC
34873267 ATATGCTTAG
Statistics
Matches: 267, Mismatches: 56, Indels: 32
0.75 0.16 0.09
Matches are distributed among these distances:
156 3 0.01
157 3 0.01
158 143 0.54
159 116 0.43
160 2 0.01
ACGTcount: A:0.22, C:0.31, G:0.27, T:0.19
Consensus pattern (158 bp):
GCTTAGACTGGGAATGAACTCCCTACGCCTAAGCCAACCCACGAAAAGAGCGTGCGGGCGCTCAG
CCAGCCGGAGAGGCAGAACGAGCAAGCCGGGCATCGGCCCGATCCCCCTTGCGTGCTGCCGATCC
CGCTGTCACAACCCTCGATCTGGTCTGA
Found at i:34873282 original size:26 final size:26
Alignment explanation
Indices: 34873246--34873298 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
34873236 CTGGTCTGAT
34873246 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* * *
34873272 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
34873298 C
1 C
34873299 CTATGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:34873972 original size:26 final size:26
Alignment explanation
Indices: 34873933--34873983 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
34873923 GGCTCAAAAT
*
34873933 CTTAGACTGAGAATGCACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
34873959 CTTAGACGTG-GAATGAACTCCGTAT
1 CTTAGAC-TGAGAATGAACTCCGTAT
34873984 ACCTAAGCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.27, C:0.22, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Done.