Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 384 of 402
Found at i:34874658 original size:158 final size:158
Alignment explanation
Indices: 34874298--34874673 Score: 379
Period size: 158 Copynumber: 2.4 Consensus size: 158
34874288 TACCAATCCC
* * *
34874298 GCTGCCGATCCTGCTGCCACAACCCTCGGTCCGATCTGATCTTAGATTGGGAATGAACTCCGTAT
1 GCTGCCGATCCTGCTGCCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCCTAT
* * * * * * * * *
34874363 GCCTAAGTCAACCCACGAAATGAAAGTGTGGGCACTGAACCGGTTAGAGAGGCATAATCGCAAGC
66 GCCTAAGCCAACCCACGAAACGAAAGTGCGGGCACTCAACCGATCAGAAAGGCAGAATAGCAAGC
* *
34874428 CAAGGATCGACTTGGTCCCCCTCTGCGT
131 CAAGGATCGACCTAGTCCCCCTCTGCGT
* * *
34874456 GCTGCC-AGT-CTCGCTGCCATAACCCTCGGTCTGG-CTACGA-CTTAGACAT-GGAATGACCTC
1 GCTGCCGA-TCCT-GCTGCCACAACCCTCGGTCCGGTCT--GATCTTAGAC-TGGGAATGAACTC
*** ** ** *
34874516 CCTATGCCTAAGCCAACCCACGAAACGGTCGTGCGGGCGTTCAGTCGATCGGAAAGGCAGAATGA
61 CCTATGCCTAAGCCAACCCACGAAACGAAAGTGCGGGCACTCAACCGATCAGAAAGGCAGAAT-A
* *
34874581 GTAAGCCGAGGATC-AGCCTAGTCCCCC-CTGCGT
125 GCAAGCCAAGGATCGA-CCTAGTCCCCCTCTGCGT
* *
34874614 GCTGCCGATCCTGCTGTCACAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTC
1 GCTGCCGATCCTGCTGCCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTC
34874674 TGCATGCTTA
Statistics
Matches: 174, Mismatches: 32, Indels: 24
0.76 0.14 0.10
Matches are distributed among these distances:
157 8 0.05
158 137 0.79
159 29 0.17
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.21
Consensus pattern (158 bp):
GCTGCCGATCCTGCTGCCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCCTAT
GCCTAAGCCAACCCACGAAACGAAAGTGCGGGCACTCAACCGATCAGAAAGGCAGAATAGCAAGC
CAAGGATCGACCTAGTCCCCCTCTGCGT
Found at i:34874706 original size:26 final size:26
Alignment explanation
Indices: 34874654--34874706 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
34874644 CCGGTCTGAT
*
34874654 CTTAGACTGGGAATGAACTCTGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
*
34874680 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGCATG
34874706 C
1 C
34874707 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:34875599 original size:26 final size:26
Alignment explanation
Indices: 34875548--34875600 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
34875538 CCGGTCCGAT
**
34875548 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
34875574 CTTAGACT-GGAGATGAACTCCATATG
1 CTTAGACTGGGA-ATGAACTCCATATG
34875600 C
1 C
34875601 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 3 0.12
26 21 0.88
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:34875957 original size:26 final size:26
Alignment explanation
Indices: 34875928--34875980 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34875918 CCAGTCCGAT
*
34875928 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
34875954 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
34875980 C
1 C
34875981 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:34876058 original size:380 final size:379
Alignment explanation
Indices: 34875345--34876383 Score: 1348
Period size: 380 Copynumber: 2.7 Consensus size: 379
34875335 CATGCTGTCA
* *
34875345 GTCCCGCTGCCACAACCCTTGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCTTATGCCTAAG
1 GTCCTGCTGCCACAACCCTTGGTCTGACTGGGGCTTAGACATGGAATGAACTCCTTATGCCTAAG
* * *
34875410 CCAACCCACAAAACGGGCGTGCGGGCGCTCAGTCGATCGGAGAGGCAGAATGCGCAAGCCGGGGA
66 CCAACCCACGAAACGGGCGTGCGGGCGCTCAGTCGACCGGAGAGGCAGAATGCGCAAG-CAGGGA
* * * * * *
34875475 TCGGCCCGGTCCACCCTGCATGCTGTCGATCCTGTTGCTGGTCCTACTATCGCAACCCTCAGTCC
130 TTGGCTCGGTCCACCCTGCGTGCTGTCGATCCTGCTGCTGGTCCTACTACCGCAACCCTCGGTCC
* *
34875540 GGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGAGATGAACTCCATATGCCTAA
195 GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCATATGCCTAA
* * * * * * * *
34875605 GTCAACCCATGAAATGAGCATGTGGGCGCTTAGCCGACCGGAGAGGATGTTCGAAGTGGCATAAT
260 GTCAACCCACGAAACGAGCATATAGGCGCTCAGCCGACCGGAGAGGACGTCCGAAGAGGCATAAT
* * * ** *
34875670 GTGCAAGTCGAGGATCAGCTCGGTCCCCCTCTACGTGCTGTCAATCCCACTGCTG
325 GCGCAAGTCGAGGATCAACCCGGTCCCCCTCTACGTGCTACCAATCCCACTGCCG
* * *
34875725 GTCCTGCTGCCACAACCCTCGGTCCGATTGGGGCTTAGACATGGAATGAACTCCTTATGCCTAAG
1 GTCCTGCTGCCACAACCCTTGGTCTGACTGGGGCTTAGACATGGAATGAACTCCTTATGCCTAAG
* ** * *
34875790 CTAATTCACGAAACGGGCGTGCGGGCACTCAG-CTGACCAGAGAGGCAGAATGCGCAAGCTAGGG
66 CCAACCCACGAAACGGGCGTGCGGGCGCTCAGTC-GACCGGAGAGGCAGAATGCGCAAGC-AGGG
* * *
34875854 ATTGGCTCGGTCCACCCTGCGTGCTGCCGATCCTACTGCTGGTCCTACTGCCGCAACCCTCGGTC
129 ATTGGCTCGGTCCACCCTGCGTGCTGTCGATCCTGCTGCTGGTCCTACTACCGCAACCCTCGGTC
*
34875919 CAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCATATGCCTA
194 CGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCATATGCCTA
* * *
34875984 AGTCAACCCACGAAACGAGCGTATAGGCGCTCAGTCGACCGGAGAGGCCGTCC-AGAGAGGCATA
259 AGTCAACCCACGAAACGAGCATATAGGCGCTCAGCCGACCGGAGAGGACGTCCGA-AGAGGCATA
* * * *
34876048 ATGCGCAAGTCGAGGATCAACCCGGTCCCTCTCTATGTGCTACCGATCCCGCTGCCG
323 ATGCGCAAGTCGAGGATCAACCCGGTCCCCCTCTACGTGCTACCAATCCCACTGCCG
* * * *
34876105 GTCTTGATGCCACAACCCTTGGTCTGACTGGGGCTTAGACATGGAATGAACTTCGTATGCCTAAG
1 GTCCTGCTGCCACAACCCTTGGTCTGACTGGGGCTTAGACATGGAATGAACTCCTTATGCCTAAG
* ** * * * *
34876170 CCAACCCATGAAACAAGCGTGC-GGCTGCTCAATCGACCGGAGAGGCAGAATTCGCAGGCCGAGG
66 CCAACCCACGAAACGGGCGTGCGGGC-GCTCAGTCGACCGGAGAGGCAGAATGCGCAAGCAG-GG
* * * * *
34876234 ATTGGCTCGATCCCCCCTTGCGTGCTGTCGATCCTGCTGCTGGTCTTACTACCACAACCTTCGGT
129 ATTGGCTCGGTCCACCC-TGCGTGCTGTCGATCCTGCTGCTGGTCCTACTACCGCAACCCTCGGT
* * * * *
34876299 TCGGTACGATCTTAGACTGGGAATGAACTCCATATGCTTAGACAT-GGAATGAACTCCGTATGCC
193 CCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC-TGGGGATGAACTCCATATGCC
** *
34876363 TAAACCAACCCACAAAACGAG
257 TAAGTCAACCCACGAAACGAG
34876384 TGTGCGGGCA
Statistics
Matches: 569, Mismatches: 82, Indels: 15
0.85 0.12 0.02
Matches are distributed among these distances:
379 7 0.01
380 445 0.78
381 116 0.20
382 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (379 bp):
GTCCTGCTGCCACAACCCTTGGTCTGACTGGGGCTTAGACATGGAATGAACTCCTTATGCCTAAG
CCAACCCACGAAACGGGCGTGCGGGCGCTCAGTCGACCGGAGAGGCAGAATGCGCAAGCAGGGAT
TGGCTCGGTCCACCCTGCGTGCTGTCGATCCTGCTGCTGGTCCTACTACCGCAACCCTCGGTCCG
GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCATATGCCTAAG
TCAACCCACGAAACGAGCATATAGGCGCTCAGCCGACCGGAGAGGACGTCCGAAGAGGCATAATG
CGCAAGTCGAGGATCAACCCGGTCCCCCTCTACGTGCTACCAATCCCACTGCCG
Found at i:34876347 original size:26 final size:26
Alignment explanation
Indices: 34876309--34876361 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34876299 TCGGTACGAT
34876309 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
34876335 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
34876361 C
1 C
34876362 CTAAACCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:34876583 original size:159 final size:159
Alignment explanation
Indices: 34876407--34876705 Score: 372
Period size: 159 Copynumber: 1.9 Consensus size: 159
34876397 AGCCAATCGG
* * * * * * *
34876407 AGAGGCAGAATGCGCAAGTCGGGGATCGGTCTGGTCCCTTTCTGCGTGTTGTC-GATCCTGCTAC
1 AGAGGCAGAATGCGCAAGCCAGGGATCGGTCCGATCCCCTTCTGCGTGCTGTCAG-TCCCGCT-C
* * *
34876471 T-GTAACCC-TCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGTT-AACCC
64 TCGCAACCCTTC-GTCTGCTCCGATCTTAGACTAGGAATGAACTCCATATGCCTAA-TTCAACCC
34876533 ACGAAAAGAGCGTGCGGGTGCTGAGTCGGCCGA
127 ACGAAAAGAGCGTGCGGGTGCTGAGTCGGCCGA
* * *
34876566 AGAGGCATAATGCGCAAGCCAGGGATCGGTCCGATCCCCTTCTGTGTGCTGTCAGTCCCGCTGTC
1 AGAGGCAGAATGCGCAAGCCAGGGATCGGTCCGATCCCCTTCTGCGTGCTGTCAGTCCCGCTCTC
* * **
34876631 GCAACCCTTCGTTTGCTCTGATCTTAGACTAGGAATGAACTCTGTATGCCTAATTCAACCCACGA
66 GCAACCCTTCGTCTGCTCCGATCTTAGACTAGGAATGAACTCCATATGCCTAATTCAACCCACGA
*
34876696 AATGAGCGTG
131 AAAGAGCGTG
34876706 TCGAAGAGGC
Statistics
Matches: 118, Mismatches: 18, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
158 3 0.03
159 112 0.95
160 3 0.03
ACGTcount: A:0.21, C:0.26, G:0.27, T:0.25
Consensus pattern (159 bp):
AGAGGCAGAATGCGCAAGCCAGGGATCGGTCCGATCCCCTTCTGCGTGCTGTCAGTCCCGCTCTC
GCAACCCTTCGTCTGCTCCGATCTTAGACTAGGAATGAACTCCATATGCCTAATTCAACCCACGA
AAAGAGCGTGCGGGTGCTGAGTCGGCCGA
Found at i:34877494 original size:26 final size:26
Alignment explanation
Indices: 34877458--34877510 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
34877448 CTGATCTGAT
34877458 CTTAGACTGGGAATGAAATCCGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
* * *
34877484 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
34877510 C
1 C
34877511 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCGTATG
Found at i:34879796 original size:159 final size:158
Alignment explanation
Indices: 34879463--34879965 Score: 394
Period size: 158 Copynumber: 3.2 Consensus size: 158
34879453 CCCAGTCTAA
* ** * **
34879463 GCATACAGAGTTCATTCCCAGTCTAAGA-TTAGATCAGACCGAGGGTTGC-GACAATAGGATCGA
1 GCATACGGAGTTCATTCCCAGTCTAAGACCCA-ACCAGACCGAGGGTTGCAG-CAGCAGGATCGA
* * * * * * * * ** *
34879526 CAGCACGCAGGGGGGACTGAGTC-GATCCCCCG-CATACACATTCTGCCTCTCCGAC-CGATTGA
64 CAGCACGCAGGGGGGACCG-GACAGA-ACCACGACTTACGCATTATGCCTCTTCG-CTCGGCTCA
* * *
34879588 GCA-CCCACATGCCCGTTTCATGGGTTGGCTTAG
126 G-AGCCCGCATGCTCGTTTCGTGGGTTGGCTTAG
** * * * * * *
34879621 GCATGGGGAGTTCATT-CCATGTCTAAGCCCCAGCCAGACCGAGGGTT-CTGGCAGCGGGATTGG
1 GCATACGGAGTTCATTCCCA-GTCTAAGACCCAACCAGACCGAGGGTTGC-AGCAGCAGGATCGA
* * * *
34879684 CAGCACGCAGAGGGGGACCGGGCCGAACCCCGACTTACGCGTTATGCCTCTTCGACT-GGCTCAG
64 CAGCACGCAG-GGGGGACCGGACAGAACCACGACTTACGCATTATGCCTCTTCG-CTCGGCTCAG
* *
34879748 AGCCCGCATGCTCGTTTCGTGGGTTGACTTAT
127 AGCCCGCATGCTCGTTTCGTGGGTTGGCTTAG
* * * * * * *
34879780 GCATACGAAGTTCATTCCCAGTCTAAGATCGAATCTGACCGAGGGTTGCAGTAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGACCCAACCAGACCGAGGGTTGCAGCAGCAGGATCGACA
* * * * * * *
34879845 GCACGCAGGGGGGACCGGATAGATCCACGGCTTACGCATTCTGCCTCTTCGGTCGGCTGAGCGCC
66 GCACGCAGGGGGGACCGGACAGAACCACGACTTACGCATTATGCCTCTTCGCTCGGCTCAGAGCC
** *
34879910 CGCACACTCGTTTTGTGGGTTGGCTTAG
131 CGCATGCTCGTTTCGTGGGTTGGCTTAG
34879938 GCATACGGAGTTCATTCCCAGTCTAAGA
1 GCATACGGAGTTCATTCCCAGTCTAAGA
34879966 TTTTGAGCCA
Statistics
Matches: 272, Mismatches: 61, Indels: 24
0.76 0.17 0.07
Matches are distributed among these distances:
157 5 0.02
158 152 0.56
159 111 0.41
160 4 0.01
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.22
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGACCCAACCAGACCGAGGGTTGCAGCAGCAGGATCGACA
GCACGCAGGGGGGACCGGACAGAACCACGACTTACGCATTATGCCTCTTCGCTCGGCTCAGAGCC
CGCATGCTCGTTTCGTGGGTTGGCTTAG
Found at i:34880969 original size:26 final size:27
Alignment explanation
Indices: 34880932--34880982 Score: 86
Period size: 26 Copynumber: 1.9 Consensus size: 27
34880922 CGTGGGTTGA
34880932 CTTAGGCATACGGAGTTCATCCCCAGT
1 CTTAGGCATACGGAGTTCATCCCCAGT
*
34880959 CTTA-GCATACGGAGTTCATTCCCA
1 CTTAGGCATACGGAGTTCATCCCCA
34880983 ATCTAAGATC
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (27 bp):
CTTAGGCATACGGAGTTCATCCCCAGT
Found at i:34881331 original size:158 final size:158
Alignment explanation
Indices: 34880959--34881355 Score: 371
Period size: 158 Copynumber: 2.5 Consensus size: 158
34880949 CATCCCCAGT
* * * * *
34880959 CTTA-GCATACGGAGTTCATTCCCAATCTAAGATCGGATCAGA-TCGAGGGTTACAGTAGTAGGA
1 CTTATGCATACGGAGTTCATT-CCAATCTAAGATCAGACCAAACT-GAGGGTTGCAGTAGCAGGA
* * * * * *
34881022 TCGACAGCACGTAGA--GGGATAGGGCTGATCCCCGACTTGCGTATTCTGCCTCTCCGGTCGACT
64 TCGATAGCACGCAGAGGGGGATAGGGCCGAACCCCGACTTGCGCATTATGCCTCTCCGGTCGACT
* * * **
34881085 GAGCGCCCGTACGCCCATTTTATGGGTTGG
129 CAGCGCCCGCACGCCCATTTCATGGGTTAA
* * ** ** *
34881115 CTT-TGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CTGAACCGAGGGTGTG--GTAGCAG
1 CTTAT-GCATACGGAGTTCATTCCA-ATCTAAG-ATCAGACCAAACTGAGGGT-TGCAGTAGCAG
* * * * * * *
34881176 GATCGGTAGCACGCAGAGGGGGATCGGGCCGAACCCTGGCTTGTGCATTATGCCTCTTCGGTCGG
62 GATCGATAGCACGCAGAGGGGGATAGGGCCGAACCCCGACTTGCGCATTATGCCTCTCCGGTCGA
* *
34881241 CTCAGCGCCCGCACGCTCGTTTCATGGGTTAA
127 CTCAGCGCCCGCACGCCCATTTCATGGGTTAA
*
34881273 CTTATGCATACGAAGTTCATTCCAATCTAAGATCAGACCAAACTGAGGGTTGCAGTAGCAGGATC
1 CTTATGCATACGGAGTTCATTCCAATCTAAGATCAGACCAAACTGAGGGTTGCAGTAGCAGGATC
*
34881338 GATAGCACACAG-GGGGGA
66 GATAGCACGCAGAGGGGGA
34881356 CCCGGTCGAT
Statistics
Matches: 187, Mismatches: 42, Indels: 23
0.74 0.17 0.09
Matches are distributed among these distances:
156 31 0.17
157 50 0.27
158 105 0.56
159 1 0.01
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.23
Consensus pattern (158 bp):
CTTATGCATACGGAGTTCATTCCAATCTAAGATCAGACCAAACTGAGGGTTGCAGTAGCAGGATC
GATAGCACGCAGAGGGGGATAGGGCCGAACCCCGACTTGCGCATTATGCCTCTCCGGTCGACTCA
GCGCCCGCACGCCCATTTCATGGGTTAA
Found at i:34882192 original size:26 final size:26
Alignment explanation
Indices: 34882162--34882228 Score: 98
Period size: 26 Copynumber: 2.6 Consensus size: 26
34882152 GTTGACTTAG
*
34882162 GCATACGAAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* * *
34882188 GCATATGGAGTTCACCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
34882214 GCATACGGAGTTCAT
1 GCATACGGAGTTCAT
34882229 TCCATTCTAA
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 35 1.00
ACGTcount: A:0.30, C:0.28, G:0.18, T:0.24
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:34882607 original size:28 final size:26
Alignment explanation
Indices: 34882569--34882621 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
34882559 ACTTAGGCAT
34882569 ATACGAAGTTCGATACCCCAGTCTAAGC
1 ATACGAAGTTC-AT-CCCCAGTCTAAGC
* *
34882597 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGAAGTTCATCCCCAGTCTAAG
34882622 ATTAGACCAG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 11 0.48
27 2 0.09
28 10 0.43
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
ATACGAAGTTCATCCCCAGTCTAAGC
Found at i:34883115 original size:26 final size:26
Alignment explanation
Indices: 34883079--34883131 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
34883069 GTTGGCTTAG
34883079 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
34883105 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
34883131 G
1 G
34883132 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:34883891 original size:26 final size:26
Alignment explanation
Indices: 34883862--34883914 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
34883852 AGTCTGATCT
34883862 TAGACTGGGAATGAACTCTGTATGCC
1 TAGACTGGGAATGAACTCTGTATGCC
*
34883888 TAGACTGGGGATGAACTCTGTATGCC
1 TAGACTGGGAATGAACTCTGTATGCC
34883914 T
1 T
34883915 CAGTCAACCT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCTGTATGCC
Found at i:34885122 original size:26 final size:26
Alignment explanation
Indices: 34885086--34885138 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
34885076 CCGATCCGAT
34885086 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
34885112 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
34885138 C
1 C
34885139 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:34885258 original size:12 final size:12
Alignment explanation
Indices: 34885241--34885272 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
34885231 TCCCCCTTTA
34885241 CGTGCTGCTGGT
1 CGTGCTGCTGGT
34885253 CGTGCTGCTGGT
1 CGTGCTGCTGGT
*
34885265 CCTGCTGC
1 CGTGCTGC
34885273 CACAACCCTC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.00, C:0.31, G:0.38, T:0.31
Consensus pattern (12 bp):
CGTGCTGCTGGT
Found at i:34885490 original size:26 final size:26
Alignment explanation
Indices: 34885454--34885506 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34885444 CTGATCTGAT
34885454 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
34885480 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
34885506 C
1 C
34885507 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:34885813 original size:11 final size:11
Alignment explanation
Indices: 34885797--34885823 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
34885787 CGATTAAGCT
34885797 CTCTGACTATG
1 CTCTGACTATG
34885808 CTCTGACTATG
1 CTCTGACTATG
34885819 CTCTG
1 CTCTG
34885824 GCGATGGTGC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.15, C:0.30, G:0.19, T:0.37
Consensus pattern (11 bp):
CTCTGACTATG
Found at i:34885950 original size:26 final size:26
Alignment explanation
Indices: 34885899--34885951 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
34885889 GTCTAGAAAT
* *
34885899 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
34885925 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
34885951 C
1 C
34885952 ATAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:34886291 original size:26 final size:26
Alignment explanation
Indices: 34886252--34886305 Score: 92
Period size: 26 Copynumber: 2.1 Consensus size: 26
34886242 TTCGGTCTGA
34886252 GCTTAGACTGGGAATGAACTCCGTAT
1 GCTTAGACTGGGAATGAACTCCGTAT
34886278 GCTTAGACAT-GGAATGAACTCCGTAT
1 GCTTAGAC-TGGGAATGAACTCCGTAT
34886304 GC
1 GC
34886306 CTAAGCTAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 26 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (26 bp):
GCTTAGACTGGGAATGAACTCCGTAT
Found at i:34887197 original size:26 final size:26
Alignment explanation
Indices: 34887161--34887213 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34887151 CCGGTCTGAT
*
34887161 CTTAGACT-GGGAGTGAACTTCGTATG
1 CTTAGACTGGGGA-TGAACTCCGTATG
34887187 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
34887213 C
1 C
34887214 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.23, C:0.19, G:0.30, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCGTATG
Found at i:34887442 original size:20 final size:21
Alignment explanation
Indices: 34887417--34887462 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
34887407 GACCCGTTTT
34887417 ATCCCC-TCTACGTGCTGTCG
1 ATCCCCTTCTACGTGCTGTCG
* *
34887437 ATCCCCTTCTGCGTGCTGTTG
1 ATCCCCTTCTACGTGCTGTCG
34887458 ATCCC
1 ATCCC
34887463 ACTGTCAGTC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 6 0.26
21 17 0.74
ACGTcount: A:0.09, C:0.39, G:0.20, T:0.33
Consensus pattern (21 bp):
ATCCCCTTCTACGTGCTGTCG
Found at i:34888014 original size:26 final size:26
Alignment explanation
Indices: 34887978--34888030 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
34887968 CCGGTTTGAT
34887978 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
*
34888004 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
34888030 C
1 C
34888031 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:34888420 original size:160 final size:158
Alignment explanation
Indices: 34888150--34888478 Score: 426
Period size: 160 Copynumber: 2.1 Consensus size: 158
34888140 AGTCCTGCTG
* * *
34888150 CCACAACCCTCAGTCCGACAGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAT
1 CCACAACCCTCAGTCCGACAGGGGCTTACACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
* * *
34888215 GAAACGAGCGTACAGGCACTGAGCCGGCCGGGGAGGCATAATGCGCAAGCCGGGCATCAGCCCGA
66 GAAACGAGCGTACAGGCACTCAGCCGGCCGGAGAGGCAGAATGCGCAAGCCGGGCATCAGCCCGA
* **
34888280 TCCCCTTCTACGTGCTGTTGATCCCCGCTA
131 TCCCC-CCTACGTGCTGCCGAT-CCCGCTA
34888310 CCACAACCCTCAGTCCGACTA-GGGCTTACACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
1 CCACAACCCTCAGTCCGAC-AGGGGCTTACACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
* * * * * ** * * *
34888374 CGAAACGGGTGTGCGGGCGCTCAGCCGGTTGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCG
65 CGAAACGAGCGTACAGGCACTCAGCCGGCCGGAGAGGCAGAATGCGCAAGCCGGGCATCAGCCCG
* * *
34888439 ATCCCCCCTGCGTGCTGCCGATCCTGCTG
130 ATCCCCCCTACGTGCTGCCGATCCCGCTA
34888468 CCACAACCCTC
1 CCACAACCCTC
34888479 GATCCGATCC
Statistics
Matches: 146, Mismatches: 22, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
158 16 0.11
159 12 0.08
160 117 0.80
161 1 0.01
ACGTcount: A:0.23, C:0.34, G:0.27, T:0.16
Consensus pattern (158 bp):
CCACAACCCTCAGTCCGACAGGGGCTTACACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
GAAACGAGCGTACAGGCACTCAGCCGGCCGGAGAGGCAGAATGCGCAAGCCGGGCATCAGCCCGA
TCCCCCCTACGTGCTGCCGATCCCGCTA
Found at i:34888596 original size:514 final size:513
Alignment explanation
Indices: 34887670--34888618 Score: 1197
Period size: 514 Copynumber: 1.8 Consensus size: 513
34887660 TCTTACACTA
* * * * *
34887670 GGAATGAACTTCGTATGCATAAGTCAACCCATGAAATGAGTGCACGAGCGCTAAGCCGGCCGAAG
1 GGAATGAACTCCGTATGCATAAGCCAACCCATGAAACGAGCGCACGAGCACTAAGCCGGCCGAAG
* * * * * *
34887735 AGGCATAATGCACAATCCGGGGATCATCCCGGTCCCCCTCTGCGTACTGTCGGTCCCGCTACCAC
66 AGGCATAATGCACAAGCCGGGCATCAGCCCGATCCCCCTCTACGTACTGTCGATCCCGCTACCAC
* * * * *
34887800 AACCTTCGGTCTGACTGAGGCGTCAACATGGAATGAACTCCCTATGCCTAAGCCAACTCATGAAA
131 AACCCTCAGTCCGACTGAGGCGTCAACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA
* *
34887865 CAGGTGTGCAGGCGCTCAATCGGCCGAAGAGGCAGAATGCGTAAGCCGAGGATCGGCCCAATCCC
196 CAGGTGTGCAGGCGCTCAACCGGCCGAAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCAATCCC
* * * * *** * * * *
34887930 CCCTGCGTACTACCAATCCTACTGTCGCAACCCTCGGTCCGGTTTGATCTTAGACTGGGAATGAA
261 CCCTGCGTACTACCAATCCTACTGCCACAACCCTCGATCCGATCCAATATTAGACCGAGAACGAA
* * * ** ** ** *
34887995 CTTCGTATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCATTAAACGAGTGTATAG
326 CTCCGTATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACAAACGAAACGAGCATACAG
*
34888060 GCACTCAGTCAACCGAAGAGGCATAATGC-ACAGCCGGGGATCAACCCGGTCCCCCTCTGTGTGC
391 GCACTCAGTCAACCGAAGAGGCAGAATGCGA-AGCCGGGGATCAACCCGGTCCCCCTCTGTGTGC
34888124 TTTCGATCCCGCTGCCAGTCCTGCTGCCACAACCCTCAGTCCGACAGGGGCTTAGACAT
455 TTTCGATCCCGCTGCCAGTCCTGCTGCCACAACCCTCAGTCCGACAGGGGCTTAGACAT
* * * **
34888183 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTAC-AGGCACTGAGCCGGCCGGG
1 GGAATGAACTCCGTATGCATAAGCCAACCCATGAAACGAGCGCACGA-GCACTAAGCCGGCCGAA
* * * *
34888247 GAGGCATAATGCGCAAGCCGGGCATCAGCCCGATCCCCTTCTACGTGCTGTTGATCCCCGCTACC
65 GAGGCATAATGCACAAGCCGGGCATCAGCCCGATCCCCCTCTACGTACTGTCGAT-CCCGCTACC
*
34888312 ACAACCCTCAGTCCGACT-AGG-GCTTACACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
129 ACAACCCTCAGTCCGACTGAGGCG-TCA-ACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
* * * ** * * * *
34888375 GAAACGGGTGTGCGGGCGCTCAGCCGGTTGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGA
192 GAAACAGGTGTGCAGGCGCTCAACCGGCCGAAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCAA
* * * *
34888440 TCCCCCCTGCGTGCTGCCGATCCTGCTGCCACAACCCTCGATCCGATCCAATATTAGACCGAGAA
257 TCCCCCCTGCGTACTACCAATCCTACTGCCACAACCCTCGATCCGATCCAATATTAGACCGAGAA
34888505 CGAACTCCGTATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACAAACGAAACGAGCAT
322 CGAACTCCGTATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACAAACGAAACGAGCAT
* * * *
34888570 GCGGGCACTCAGTCGACC-AGAGAGGCAGGATGCGTAAGCCGGGGATCAA
387 ACAGGCACTCAGTCAACCGA-AGAGGCAGAATGCG-AAGCCGGGGATCAA
34888619 ACGGGTGGTA
Statistics
Matches: 362, Mismatches: 67, Indels: 12
0.82 0.15 0.03
Matches are distributed among these distances:
512 2 0.01
513 103 0.28
514 243 0.67
515 13 0.04
516 1 0.00
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (513 bp):
GGAATGAACTCCGTATGCATAAGCCAACCCATGAAACGAGCGCACGAGCACTAAGCCGGCCGAAG
AGGCATAATGCACAAGCCGGGCATCAGCCCGATCCCCCTCTACGTACTGTCGATCCCGCTACCAC
AACCCTCAGTCCGACTGAGGCGTCAACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA
CAGGTGTGCAGGCGCTCAACCGGCCGAAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCAATCCC
CCCTGCGTACTACCAATCCTACTGCCACAACCCTCGATCCGATCCAATATTAGACCGAGAACGAA
CTCCGTATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACAAACGAAACGAGCATACAG
GCACTCAGTCAACCGAAGAGGCAGAATGCGAAGCCGGGGATCAACCCGGTCCCCCTCTGTGTGCT
TTCGATCCCGCTGCCAGTCCTGCTGCCACAACCCTCAGTCCGACAGGGGCTTAGACAT
Found at i:34889207 original size:26 final size:26
Alignment explanation
Indices: 34889169--34889247 Score: 126
Period size: 26 Copynumber: 3.0 Consensus size: 26
34889159 GGCTCAAACT
34889169 CTTAGAC-TGGGAATGAAC-CCTGTATG
1 CTTAGACAT-GGAATGAACTCC-GTATG
34889195 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
34889221 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
34889247 C
1 C
34889248 CTAAGCCAAC
Statistics
Matches: 51, Mismatches: 0, Indels: 4
0.93 0.00 0.07
Matches are distributed among these distances:
26 48 0.94
27 3 0.06
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:34889726 original size:26 final size:26
Alignment explanation
Indices: 34889697--34889752 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
34889687 CTAGTTTGAT
34889697 CTTAGACT-GGGAATGAACTCTACATG
1 CTTAGACTAGGG-ATGAACTCTACATG
* **
34889723 CTTAGACTAGGGATGATCTCTGTATG
1 CTTAGACTAGGGATGAACTCTACATG
34889749 CTTA
1 CTTA
34889753 AGTCAACCCA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.18, G:0.23, T:0.32
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCTACATG
Found at i:34890364 original size:163 final size:168
Alignment explanation
Indices: 34890090--34890554 Score: 435
Period size: 179 Copynumber: 2.7 Consensus size: 168
34890080 AATCCATAAG
* * * ** *
34890090 CTTAGACAT-GGAATGAAC-TCTGTATGCCTAAGCCAACCCATAAAATGAGCGTGTGGGTGCTCA
1 CTTAGAC-TGGGAATGAACTTC-GTATGCATAAGTCAACCCATAAAATGAGCGTGCGGGCACTGA
* * *** * *** *
34890153 GTCGGTCGGGGAGGCAGAATGCATGAGCTGGGGATCGGCTTAGTCCCCC-CTACGTGTTGTCGAT
64 G-CGGTCGGAGAGGCATAATGCGCAAGCTGGGGATCGACCCGGTCCCCCTCTACGTGCTGTCGAT
34890217 -CCTAC-TGCCGT-AACCCTCG-GT-C-CGGTCCGGTCTGAT
128 CCCTACATGCCGTCAACCCT-GTGTACACGGTCCGGTCTGAT
* * *
34890253 CTTAGACTGGGAATGAACTTCGTATGCTTAAGTCAACCCATGAAATGAGCGTGCGGGCATTGAGC
1 CTTAGACTGGGAATGAACTTCGTATGCATAAGTCAACCCATAAAATGAGCGTGCGGGCACTGAGC
*
34890318 AGGCCGGAGAGGCATAATGCGCAAGCTGGGGATCGACCCGGTCCCCCTCTACGTGCTGTCGATCC
66 -GGTCGGAGAGGCATAATGCGCAAGCTGGGGATCGACCCGGTCCCCCTCTACGTGCTGTCGAT--
* * * *
34890383 CCCCTACATGCTGTCGATCCTGTTGTCACAACCATCGGTCTGGTCTGAT
128 -CCCTACATGCCGTCAACCCTG-TGT----A-CA-CGGTCCGGTCTGAT
* * *
34890432 CTTAGACTGGGAATGAACTACGTATGCATAAGTCAACCCACAAAATGAGCGTACGGGCACTGAGC
1 CTTAGACTGGGAATGAACTTCGTATGCATAAGTCAACCCATAAAATGAGCGTGCGGGCACTGAG-
* ** * *
34890497 CGGTCGAAGAGGCATAATGCGCAAGCCAGGGATCAACCCGATCCCCCTCTACGTGCTG
65 CGGTCGGAGAGGCATAATGCGCAAGCTGGGGATCGACCCGGTCCCCCTCTACGTGCTG
34890555 CCGGTCCCAC
Statistics
Matches: 246, Mismatches: 35, Indels: 26
0.80 0.11 0.08
Matches are distributed among these distances:
162 2 0.01
163 87 0.35
164 16 0.07
168 5 0.02
169 6 0.02
170 4 0.02
171 2 0.01
177 1 0.00
179 122 0.50
180 1 0.00
ACGTcount: A:0.23, C:0.27, G:0.28, T:0.22
Consensus pattern (168 bp):
CTTAGACTGGGAATGAACTTCGTATGCATAAGTCAACCCATAAAATGAGCGTGCGGGCACTGAGC
GGTCGGAGAGGCATAATGCGCAAGCTGGGGATCGACCCGGTCCCCCTCTACGTGCTGTCGATCCC
TACATGCCGTCAACCCTGTGTACACGGTCCGGTCTGAT
Found at i:34890389 original size:20 final size:21
Alignment explanation
Indices: 34890359--34890402 Score: 72
Period size: 20 Copynumber: 2.1 Consensus size: 21
34890349 ATCGACCCGG
*
34890359 TCCCCCTCTACGTGCTGTCGA
1 TCCCCCTCTACATGCTGTCGA
34890380 TCCCCC-CTACATGCTGTCGA
1 TCCCCCTCTACATGCTGTCGA
34890400 TCC
1 TCC
34890403 TGTTGTCACA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 16 0.73
21 6 0.27
ACGTcount: A:0.11, C:0.45, G:0.16, T:0.27
Consensus pattern (21 bp):
TCCCCCTCTACATGCTGTCGA
Found at i:34890785 original size:26 final size:26
Alignment explanation
Indices: 34890749--34890801 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
34890739 CCAGTTCGAT
34890749 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
34890775 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
34890801 C
1 C
34890802 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34891470 original size:26 final size:25
Alignment explanation
Indices: 34891426--34891477 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
34891416 CCGATCCGAT
*
34891426 CTTAGACTGGAATGAACTCTGTATG
1 CTTAGACTGGAATGAACTCCGTATG
*
34891451 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACT-GGAATGAACTCCGTATG
34891477 C
1 C
34891478 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 8 0.33
26 16 0.67
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTCCGTATG
Found at i:34891792 original size:159 final size:155
Alignment explanation
Indices: 34891450--34891812 Score: 365
Period size: 156 Copynumber: 2.3 Consensus size: 155
34891440 AACTCTGTAT
* * * * * * * *
34891450 GCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTCAG
1 GCTTAGACTAGGAATGAACTCCATATGCCT-ACTCAACCCATGAAATGAGCGAGCAGGCGCTCAC
* * * *
34891515 TCGGTCGGAAAGGCAGAATGCGTAAGCTGGGGATCGACCCACCCCCCTACATGCTGTCGATCCTA
65 TCGGCCGGAAAGGCAGAATGCGCAAGCCGGGGATCGACCCACCCCCCTACATGCTGCCGATCCTA
*
34891580 CAGCCACAACCCTCAGTCCGGTCCGA
130 CAGCCACAACCCTCAGTCCGCTCCGA
* * * *
34891606 TCATAGACTGGGAATGAACTCCATATGCCTCACTCAACCCATGAAATGAGCGAGCAGGCGCTGAC
1 GCTTAGACTAGGAATGAACTCCATATGCCT-ACTCAACCCATGAAATGAGCGAGCAGGCGCTCAC
* * * *
34891671 -CTGGCCGGAGAGGCATAATGCGCAAGCCGGGGATCGACCCAGTCCCCCTCTGCGTGCTGCCGAT
65 TC-GGCCGGAAAGGCAGAATGCGCAAGCCGGGGATCGACCCA--CCCCC-CTACATGCTGCCGAT
* * * *
34891735 CGC-ACTGCCACAACCCTCGGTCCAGCT-GGG
126 C-CTACAGCCACAACCCTCAGTCC-GCTCCGA
* *
34891765 GCTTAGAC-ATGGAATGAACTCCCTATGCCTACGCCAACCCATGAAATG
1 GCTTAGACTA-GGAATGAACTCCATATGCCTAC-TCAACCCATGAAATG
34891813 TGTGTGCGGG
Statistics
Matches: 168, Mismatches: 31, Indels: 13
0.79 0.15 0.06
Matches are distributed among these distances:
155 1 0.01
156 86 0.51
158 7 0.04
159 71 0.42
160 3 0.02
ACGTcount: A:0.25, C:0.32, G:0.26, T:0.18
Consensus pattern (155 bp):
GCTTAGACTAGGAATGAACTCCATATGCCTACTCAACCCATGAAATGAGCGAGCAGGCGCTCACT
CGGCCGGAAAGGCAGAATGCGCAAGCCGGGGATCGACCCACCCCCCTACATGCTGCCGATCCTAC
AGCCACAACCCTCAGTCCGCTCCGA
Found at i:34891836 original size:159 final size:156
Alignment explanation
Indices: 34891450--34891950 Score: 413
Period size: 159 Copynumber: 3.2 Consensus size: 156
34891440 AACTCTGTAT
* * * * *
34891450 GCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTCAG
1 GCTTAGACTAGGAATGAACTCCATATGCCTACGTCAACCCATGAAATGAGCGTGCGGGTGCTCAA
* * * * * *
34891515 TCGGTCGGAAAGGCAGAATGCGTAAGCTGGGGATCGACCCACCCCCCTACATGCTGTCGATCCTA
66 CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCACCCCCCTACATGCTGCCGATCCTA
*
34891580 CAGCCACAACCCTCAGTCCGGTCCGA
131 CAGCCACAACCCTCAGTCCGCTCCGA
* * * * * * *
34891606 TCATAGACTGGGAATGAACTCCATATGCCTCAC-TCAACCCATGAAATGAGCGAGCAGGCGCT-G
1 GCTTAGACTAGGAATGAACTCCATATGCCT-ACGTCAACCCATGAAATGAGCGTGCGGGTGCTCA
* * *
34891669 ACCTGGCCGGAGAGGCATAATGCGCAAGCCGGGGATCGACCCAGTCCCCCTCTGCGTGCTGCCGA
65 ACC-GGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCA--CCCCC-CTACATGCTGCCGA
* * * *
34891734 TCGC-ACTGCCACAACCCTCGGTCCAGCT-GGG
126 TC-CTACAGCCACAACCCTCAGTCC-GCTCCGA
* * * *
34891765 GCTTAGAC-ATGGAATGAACTCCCTATGCCTACGCCAACCCATGAAATGTGTGTGCGGGTGCTCA
1 GCTTAGACTA-GGAATGAACTCCATATGCCTACGTCAACCCATGAAATGAGCGTGCGGGTGCTCA
* * * * * * * * * *
34891829 ACCGGCCGAAGAGGTAGAATACGTAAGCTGAGGATCGGCCCGATCCCCCTTACGTGCTACCGATC
65 ACCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCC-A-CCCCCCTACATGCTGCCGATC
* ** * *
34891894 CTGCTA-CCGTAACCCTC-GATCCGATCCAA
128 CTAC-AGCCACAACCCTCAG-TCCGCTCCGA
* * *
34891923 TCTTAGACTGGGAATGAACTCCGTATGC
1 GCTTAGACTAGGAATGAACTCCATATGC
34891951 TTAGATTGGG
Statistics
Matches: 270, Mismatches: 59, Indels: 30
0.75 0.16 0.08
Matches are distributed among these distances:
155 1 0.00
156 84 0.31
157 5 0.02
158 57 0.21
159 116 0.43
160 7 0.03
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (156 bp):
GCTTAGACTAGGAATGAACTCCATATGCCTACGTCAACCCATGAAATGAGCGTGCGGGTGCTCAA
CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCACCCCCCTACATGCTGCCGATCCTA
CAGCCACAACCCTCAGTCCGCTCCGA
Found at i:34891894 original size:498 final size:493
Alignment explanation
Indices: 34890958--34892050 Score: 1205
Period size: 498 Copynumber: 2.2 Consensus size: 493
34890948 TCCGGCTGGG
* * * * ** *
34890958 GCTTAGAC-ATGGAATGAACTTCGTATGCCTAAGCCAACTCACGAAATGAGCGTATGGGCACTCA
1 GCTTAGACTA-GGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCA
* * * * * *
34891022 GCCAGCCGGAGAGGCAGAATGCGCATGCCGGGGATCGGCTCAATCCCCCCTGTCGATCCTGCTAC
65 GCCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCAACCCCCCCTGTCGATCCTACTAC
* ** * * * * *
34891087 TACAACCCTTGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCATG
130 CACAACCCTCAGTCCGGTCCGATCATAGACTGGGAATGAACTCCATATGCATAACTCAACCCATG
* * * *
34891152 AAACGAGCAAGCCAACGCTGAGCCAACTGAAGAGGAATAATGCGTAAGCTGAGGATCAGCCCGGT
195 AAACGAGCAAGCCAACGCTGAGCCAACCGAAGAGGAATAATGCGCAAGCCGAGGATCAGCCCAGT
* * * *
34891217 CTCCCTCACGTGCTGCCGGTCCTCTTGCCACAACCCTCGGTCCGACTAGGGCTGAGAGATGGAAT
260 CCCCCTCACGTGCTGCCGATCCACTTGCCACAACCCTCGGTCCGACTAGGGCTGAGACATGGAAT
* * *
34891282 GAACTCCCTATGCCTAAGCTAACCCACGAATCGTGCGTGCGGGCGCTCAGCCGGTCAAAGAGGCA
325 GAACTCCCTATGCCTAAGCCAACCCACGAATCGTGCGTGCGGGCGCTCAACCGGCCAAAGAGGCA
* * * * * * **
34891347 AAATGCACAAGCTGGGGAACAACCTGGTCCCCCCTGCATGCTGCCGATCCTGCTGTCACAACCCT
390 AAATACACAAGCTGAGGAACAACCCGATCCCCCCTACATGCTACCGATCCTGCTACCACAACCCT
* * * *
34891412 TGGTCCGATCCGATCTTAGACT-GGAATGAACTCTGTAT
455 CGATCCGATCCAATCTTAGACTGGGAATGAACTCCGTAT
*
34891450 GCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTCAG
1 GCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* * * * * *
34891515 TCGGTCGGAAAGGCAGAATGCGTAAGCTGGGGATCGACCCACCCCCCTACATGCTGTCGATCCTA
66 CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCAACCCCC--C---CTGTCGATCCTA
* *
34891580 C-AGCCACAACCCTCAGTCCGGTCCGATCATAGACTGGGAATGAACTCCATATGCCTCACTCAAC
126 CTA-CCACAACCCTCAGTCCGGTCCGATCATAGACTGGGAATGAACTCCATATGCATAACTCAAC
* * * ** * * *
34891644 CCATGAAATGAGCGAG-CAGGCGCTGA-CCTGGCCGGAGAGGCATAATGCGCAAGCCGGGGATC-
190 CCATGAAACGAGCAAGCCA-ACGCTGAGCC-AACCGAAGAGGAATAATGCGCAAGCCGAGGATCA
* * *
34891706 GACCCAGTCCCCCTCTGCGTGCTGCCGATCGCAC-TGCCACAACCCTCGGTCC-AGCTGGGGCTT
253 G-CCCAGTCCCCCTC-ACGTGCTGCCGATC-CACTTGCCACAACCCTCGGTCCGA-CTAGGGCTG
* * * *
34891769 AGACATGGAATGAACTCCCTATGCCTACGCCAACCCATGAAAT-GTGTGTGCGGGTGCTCAACCG
314 AGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACG-AATCGTGCGTGCGGGCGCTCAACCG
* * * ** * ** * *
34891833 GCCGAAGAGGTAGAATACGTAAGCTGAGGATCGGCCCGATCCCCCTTACGTGCTACCGATCCTGC
378 GCCAAAGAGGCAAAATACACAAGCTGAGGAACAACCCGATCCCCCCTACATGCTACCGATCCTGC
**
34891898 TACCGTAACCCTCGATCCGATCCAATCTTAGACTGGGAATGAACTCCGTAT
443 TACCACAACCCTCGATCCGATCCAATCTTAGACTGGGAATGAACTCCGTAT
* * * * *
34891949 GCTTAGATTGGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGGGTGCGGGCGCTCAG
1 GCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* * *
34892014 CCGACCAGAGAGGCAGGATGCGCAAGCCGGGGATCGA
66 CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGA
34892051 ACGGGTGGTA
Statistics
Matches: 492, Mismatches: 94, Indels: 23
0.81 0.15 0.04
Matches are distributed among these distances:
492 91 0.18
493 1 0.00
494 1 0.00
496 6 0.01
497 120 0.24
498 165 0.34
499 108 0.22
ACGTcount: A:0.25, C:0.30, G:0.27, T:0.19
Consensus pattern (493 bp):
GCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAG
CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCAACCCCCCCTGTCGATCCTACTACC
ACAACCCTCAGTCCGGTCCGATCATAGACTGGGAATGAACTCCATATGCATAACTCAACCCATGA
AACGAGCAAGCCAACGCTGAGCCAACCGAAGAGGAATAATGCGCAAGCCGAGGATCAGCCCAGTC
CCCCTCACGTGCTGCCGATCCACTTGCCACAACCCTCGGTCCGACTAGGGCTGAGACATGGAATG
AACTCCCTATGCCTAAGCCAACCCACGAATCGTGCGTGCGGGCGCTCAACCGGCCAAAGAGGCAA
AATACACAAGCTGAGGAACAACCCGATCCCCCCTACATGCTACCGATCCTGCTACCACAACCCTC
GATCCGATCCAATCTTAGACTGGGAATGAACTCCGTAT
Found at i:34891953 original size:26 final size:26
Alignment explanation
Indices: 34891924--34891976 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
34891914 CCGATCCAAT
34891924 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
34891950 CTTAGATTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
34891976 C
1 C
34891977 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34892679 original size:26 final size:26
Alignment explanation
Indices: 34892641--34892693 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
34892631 GGCTCAAAAT
34892641 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
34892667 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
34892693 C
1 C
34892694 CTAAGCTAAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34893095 original size:159 final size:158
Alignment explanation
Indices: 34892666--34893169 Score: 476
Period size: 159 Copynumber: 3.2 Consensus size: 158
34892656 AACTCCGTAT
* * ** *
34892666 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAAGACACGAAA-GGAGCGTGCGGGCGCTCA
1 GCTTAGATATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGG-GCGTGCGGGCGCTCA
* * *
34892730 GTCAGCCAGAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGGTCCCCACCTGCATGTTGTCGAT
65 GTCGGCCGGAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGGTCCCC-CCTACATGTTGTCGAT
* ** *
34892795 CCTGCTGCCACAACCCTTGGTCCGGTCCGA
129 CCCGCTGCCACAACCCTCAGTCCGATCCGA
* * * * * * * *
34892825 TCTTAGACTA-GGAATGAACTCCGTATGCATAAGTCAACCCATTAAACGAGCATGCGGGCGTTTA
1 GCTTAGA-TATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCA
* * * * * * * *
34892889 G-CAGGCCGAAGAGGCATAATACGCAAGTCAGGGATCGGCCCGATCCCCCTTTACATGTTGTCGG
65 GTC-GGCCGGAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGGTCCCCC-CTACATGTTGTCGA
** *
34892953 TCCCGCTGCCACAACCCTCAGTCCGATTGGG
128 TCCCGCTGCCACAACCCTCAGTCCGATCCGA
* *
34892984 GCTTAGATATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCACTCAG
1 GCTTAGATATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAG
* * * * ** * *
34893049 TCGGCCGGAGAGGAAGAATGCGCAAGCCGGGGATCGACCTGGTCCCCCCTGCGGGCTATCGATCC
66 TCGGCCGGAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGGTCCCCCCTACATGTTGTCGATCC
* *** * * *
34893114 AGCTGTTGCAACCCTCGGTCCAATTCGA
131 CGCTGCCACAACCCTCAGTCCGATCCGA
* *
34893142 TCTTAGACT-GGGAATGAACTCCGTATGC
1 GCTTAGA-TATGGAATGAACTCCGTATGC
34893170 TTAGACTGGG
Statistics
Matches: 270, Mismatches: 68, Indels: 15
0.76 0.19 0.04
Matches are distributed among these distances:
158 57 0.21
159 210 0.78
160 3 0.01
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.19
Consensus pattern (158 bp):
GCTTAGATATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAG
TCGGCCGGAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGGTCCCCCCTACATGTTGTCGATCC
CGCTGCCACAACCCTCAGTCCGATCCGA
Found at i:34893195 original size:26 final size:26
Alignment explanation
Indices: 34893143--34893195 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
34893133 CCAATTCGAT
*
34893143 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
* *
34893169 CTTAGACTGGGGATGAACTTCGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
34893195 C
1 C
34893196 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:34893311 original size:184 final size:184
Alignment explanation
Indices: 34892984--34893537 Score: 625
Period size: 184 Copynumber: 3.0 Consensus size: 184
34892974 TCCGATTGGG
* * * * * *
34892984 GCTTAGATATGGAATGAACTCC-CTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCACTCA
1 GCTTAGACATGGAAAGAACTCCGC-ATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCA
* * * * * *
34893048 G-TCGGCCGGAGAGGAAGAATGCGCAAGCCGGGGATC-GACCTGGTCCCCCCTGCGGGCTATCGA
65 GCT-GGCAGGAGAGGCAGAATGCGTAAGCCAGGGATCAG-CCTGGTCCCCCCTGCGTGCTGTCGA
* *
34893111 TCCAGCTGTTGCAACCCTCGGTCCAATTCGATCTTAGACTGGGAATGAACTCCGTAT
128 TCCTGCTGCTGCAACCCTCGGTCCAATTCGATCTTAGACTGGGAATGAACTCCGTAT
* * * * * *
34893168 GCTTAGAC-TGGGGATGAACTTCGCATGCCTAAGTCAACCCACGGAATGAGCGTGCGGGTGCTCA
1 GCTTAGACAT-GGAAAGAACTCCGCATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCA
* * * *
34893232 GCTGGCAGGAGAGGCAGAATGCGTAAGCCTGAGATCAGCCTGGTCCCCCCTACGTGCTGTCAATC
65 GCTGGCAGGAGAGGCAGAATGCGTAAGCCAGGGATCAGCCTGGTCCCCCCTGCGTGCTGTCGATC
* ** * * **
34893297 CTGCTGCCGCAACCCTCCATCCAGTCCGATGATAGACTGGGAATGAACTCCGTAT
130 CTGCTGCTGCAACCCTCGGTCCAATTCGATCTTAGACTGGGAATGAACTCCGTAT
*
34893352 GCTTAGACATGGAAAGAACTCCGCATGCCTAAGCCAACCCACGAAATGAACGTGCGGGCGCTCAG
1 GCTTAGACATGGAAAGAACTCCGCATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* * * * * * * *
34893417 CCGACTGGAGAGGCAAAATGCATAAGTCAGGGATCAG-CTCGGTCCCCCTTGCATGCTGTCGATC
66 CTGGCAGGAGAGGCAGAATGCGTAAGCCAGGGATCAGCCT-GGTCCCCCCTGCGTGCTGTCGATC
* * *
34893481 TTGCTGCTGCAACCCTCGGTCC-ATTCCAATCTTAGATTGGGAATGAACTCCGTAT
130 CTGCTGCTGCAACCCTCGGTCCAATT-CGATCTTAGACTGGGAATGAACTCCGTAT
34893536 GC
1 GC
34893538 CTAAGTCAAC
Statistics
Matches: 306, Mismatches: 57, Indels: 14
0.81 0.15 0.04
Matches are distributed among these distances:
183 4 0.01
184 298 0.97
185 4 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (184 bp):
GCTTAGACATGGAAAGAACTCCGCATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
CTGGCAGGAGAGGCAGAATGCGTAAGCCAGGGATCAGCCTGGTCCCCCCTGCGTGCTGTCGATCC
TGCTGCTGCAACCCTCGGTCCAATTCGATCTTAGACTGGGAATGAACTCCGTAT
Found at i:34894568 original size:26 final size:26
Alignment explanation
Indices: 34894539--34894591 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34894529 CACTCAAAAT
34894539 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
34894565 CTTAGACATGGACTGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
34894591 C
1 C
34894592 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:34894958 original size:159 final size:158
Alignment explanation
Indices: 34894564--34895009 Score: 454
Period size: 159 Copynumber: 2.8 Consensus size: 158
34894554 AACTCCGTAT
* *
34894564 GCTTAGACATGGACTGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCATTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAG
* * * * *
34894629 CCGACCAGAGAGGCAGAATGCGCAAGTCGAGGATCGACCCAGCCTCCCCTATG--TGCTGTCGAT
66 CCGACCAGAGAGGCAAAATGCGCAAGCCG-GGATCGACCCGGTC-CCCCTCTGCATGCTGTCGAT
* * ** * *
34894692 CCTGCTGCCGTAACCCTCGGTCCGATCTGA
129 CCCGCTACCACAACCCTCGATCCGAGCTGA
* * * * * * * * *
34894722 TCTTTGA-TTGAGAATGAACTCCGTATGCATAAGTCAACCCATGAAATGAGCGTACGGGCGCTAA
1 GCTTAGACATG-GAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCA
* * * * * * *
34894786 ACAGGCCAAAGAGGCATAATGCGCAAGCCAGGGATCGATCCGGTCCCCCTCTGCATGCTGTCGGT
65 GCCGACCAGAGAGGCAAAATGCGCAAGCC-GGGATCGACCCGGTCCCCCTCTGCATGCTGTCGAT
*
34894851 CCCGCTACCACAACCCTCGAT-CGAGCTGGG
129 CCCGCTACCACAACCCTCGATCCGAGCT-GA
* * * *
34894881 GCTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCCACGAAAC-AGGCGTGCAGGCACTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGA-GCGTGCGGGCACTCA
* * *
34894945 GCCGACCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCGATCCCCC-CTGCATGCTGTCGAT
65 GCCGACCAGAGAGGCAAAATGCGCAAGCC-GGGATCGACCCGGTCCCCCTCTGCATGCTGTCGAT
34895009 C
129 C
34895010 TTGCTGTCGT
Statistics
Matches: 228, Mismatches: 53, Indels: 14
0.77 0.18 0.05
Matches are distributed among these distances:
157 9 0.04
158 105 0.46
159 112 0.49
160 2 0.01
ACGTcount: A:0.25, C:0.31, G:0.26, T:0.17
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAG
CCGACCAGAGAGGCAAAATGCGCAAGCCGGGATCGACCCGGTCCCCCTCTGCATGCTGTCGATCC
CGCTACCACAACCCTCGATCCGAGCTGA
Found at i:34895069 original size:26 final size:26
Alignment explanation
Indices: 34895040--34895092 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
34895030 CTGGTTCGAT
* *
34895040 CTTAGACT-GGGAATGACCTTCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
34895066 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
34895092 C
1 C
34895093 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:34895460 original size:184 final size:184
Alignment explanation
Indices: 34895249--34895618 Score: 501
Period size: 184 Copynumber: 2.0 Consensus size: 184
34895239 TCCGATTGGG
*
34895249 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACAAGCA-TACGGGCCCTCA
1 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACAAG-AGTACGAGCCCTCA
* * *
34895313 GCCAGCCGAAAAGGCAGAATGCGCAAGCCAGGGATCGATCCGATCCCCCCTGGGTGCTACCGATC
65 ACCAGCCGAAAAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCCTGCGTGCTACCGATC
* * * *
34895378 TTGCTGCCACAACCCTC-GATCCGGTCCGATCTTAGATTGGGAATGAACTCTGTAT
130 CTACTGCCACAACCCTCAG-TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
* * * *
34895433 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGAGTGCGAGCGCTCAA
1 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACAAGAGTACGAGCCCTCAA
* * * * * **
34895498 CCGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATTGACCCGGTCCCCCCTGCGTGCTGTCGATCC
66 CCAGCCGAAAAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCCTGCGTGCTACCGATCC
* ** *
34895563 TACTGTCGTAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
131 TACTGCCACAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
34895617 GC
1 GC
34895619 CTAAGTCAAC
Statistics
Matches: 161, Mismatches: 23, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
183 1 0.01
184 159 0.99
185 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACAAGAGTACGAGCCCTCAA
CCAGCCGAAAAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCCTGCGTGCTACCGATCC
TACTGCCACAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
Found at i:34895743 original size:158 final size:155
Alignment explanation
Indices: 34895434--34896409 Score: 571
Period size: 158 Copynumber: 6.2 Consensus size: 155
34895424 ACTCTGTATG
* * * * *
34895434 CTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGAGTGCGAGCGCTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
34895499 CGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATTGACCCGGTCCCCCCTGCGTGCTGTCGATCCT
66 CGACCGGAGAGGCAGAATGCGCAAG-CGGGGATCGGCCCAGT-CCCCCTGCGTGCTGCCGATCCT
* * * *
34895564 ACTGTCGTAACCCTCAGTCCGGTCTGAT
129 GCTGCCGCAACCTTC-GTCCGGTCTGAT
* *
34895592 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * *
34895656 CCGACCAGAGAGGCATAATGCGCAAGTCGGGGATCGGCCCAGTCCCCTCTACGTGCTGCCGGT-C
65 CCGACCGGAGAGGCAGAATGCGCAAG-CGGGGATCGGCCCAGTCCCC-CTGCGTGCTGCCGATCC
* * **
34895720 TCGCTACCACAACCTTCGTTCCGGT-TGGGG
128 T-GCTGCCGCAACCTTCG-TCCGGTCT-GAT
* * * * *
34895750 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCAGGTGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
** * * * * * *
34895815 CGGTCGGAGTGGCAGAATGTGCAAGCCGGGATC-GACCTGATCCCCCTTGCGTGCTACCGATCCT
66 CGACCGGAGAGGCAGAATGCGCAAGCGGGGATCGGCCCAG-TCCCCC-TGCGTGCTGCCGATCCT
* *
34895879 GCTGCTGCAACCCTT-GATCCAGTCTGAT
129 GCTGCCGCAA-CCTTCG-TCCGGTCTGAT
* * * * *
34895907 GTTAGAC-TGGGAATGAACTCCATATGCCTAAGTCAA-CCACGAAACGAGCGTGCGGGTGCCTGA
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCG-CTCA
* * *** ** * * * ** *
34895970 GCCGACTTGGAGAGGCATAATGCATGAGCCGGGGATCAACCCGGTCCCCCTCTACGTACTATCGG
64 GCCGAC-CGGAGAGGCAGAATGCGCAAG-CGGGGATCGGCCCAGT-CCCC-CTGCGTGCTGCCGA
* ** * * * **
34896035 TCCCGCTGCCATAGCCCTCAGTCTGGT-TGGG
125 TCCTGCTGCCGCAACCTTC-GTCCGGTCTGAT
* * * * * *
34896066 CTTAGACATGG-ATGAACTCCCTATGCCTAAACCAAACCATGAAAC-AGGCGTGCAGGCACTCAG
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGA-GCGTGCGGGCGCTCAG
* ** * * * ** * *
34896129 TCGGTCGGAAAGGTAGAATGCGCAAGCCGGTAGATCGGCCTGGTCCCCCTCTTACGTGCTGTCG-
65 CCGACCGGAGAGGCAGAATGCGCAAG-CGG-GGATCGGCCCAGT-CCCC-C-TGCGTGCTGCCGA
* * * * **
34896193 TCCCGTTGCCACAACCCTCGGATCCGGT-TGGGG
125 TCCTGCTGCCGCAACCTTC-G-TCCGGTCT-GAT
* * * * *
34896226 CTTAGACCTGGAATGAACTCCCTATGGCCTAAGCC-ACCCATAGAAACGGGCG-GCGGGCACTCA
1 CTTAGACATGGAATGAACTCCGTAT-GCCTAAGCCAACCCA-CGAAACGAGCGTGCGGGCGCTCA
* * * ** * * *
34896289 GCCGATCGGAGAGGCAGAATGTGCAAGCCGAGGATCGGCTTAGTCCCCCTGTGTGCTGCTGATCG
64 GCCGACCGGAGAGGCAGAATGCGCAAG-CGGGGATCGGCCCAGTCCCCCTGCGTGCTGCCGATCC
* ** * *
34896354 TACTGCCATAAGCC-TCGATCCGATCCGAT
128 TGCTGCCGCAA-CCTTCG-TCCGGTCTGAT
34896383 CTTAGAC-TGGGAATGAACTCCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
34896410 TTAGACTGGA
Statistics
Matches: 638, Mismatches: 145, Indels: 72
0.75 0.17 0.08
Matches are distributed among these distances:
156 29 0.05
157 139 0.22
158 287 0.45
159 60 0.09
160 53 0.08
161 54 0.08
162 16 0.03
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (155 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGACCGGAGAGGCAGAATGCGCAAGCGGGGATCGGCCCAGTCCCCCTGCGTGCTGCCGATCCTGC
TGCCGCAACCTTCGTCCGGTCTGAT
Found at i:34896084 original size:315 final size:315
Alignment explanation
Indices: 34895433--34896178 Score: 903
Period size: 315 Copynumber: 2.4 Consensus size: 315
34895423 AACTCTGTAT
* * * *
34895433 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGAGTGC-GAGCGCTCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCAG-GCGCTCA
** * * * * * **
34895497 ACCGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATTGACCCGGTCCCCCCTGCGTGCTGTCGATC
65 GTCGGTCGGAGAGGCAGAATGCGCAAGCC-GGGATCGACCTGGTCCCCCTTGCGTGCTACCGATC
* * *
34895562 CTACTGTCGTAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
129 CTACTGTCGCAACCCTCAGTCCAGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGTCA
* * *
34895627 ACCCACGAAACGAGCGTGCGGGCGCTGAGCCGACCAGAGAGGCATAATGCGCAAGTCGGGGATCG
194 ACCCACGAAACGAGCGTGCGGGCGCTGAGCCGACCAGAGAGGCATAATGCACAAGCCGGGGATCA
* * * * *
34895692 GCCCAGTCCCCTCTACGTGCTGCCGGTCTCGCTACCACAACCTTCGTTCCGGTTGGG
259 ACCCAGTCCCCTCTACGTACTACCGGTCCCGCTACCACAACCCTCGTTCCGGTTGGG
* *
34895749 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCAGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCAGGCGCTCAG
* * *
34895814 TCGGTCGGAGTGGCAGAATGTGCAAGCCGGGATCGACCTGATCCCCCTTGCGTGCTACCGATCCT
66 TCGGTCGGAGAGGCAGAATGCGCAAGCCGGGATCGACCTGGTCCCCCTTGCGTGCTACCGATCCT
* * *
34895879 GCTG-CTGCAACCCT-TGATCCAGTCTGATGTTAGACTGGGAATGAACTCCATATGCCTAAGTCA
131 ACTGTC-GCAACCCTCAG-TCCAGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGTCA
* ** **
34895942 A-CCACGAAACGAGCGTGCGGGTGCCTGAGCCGACTTGGAGAGGCATAATGCATGAGCCGGGGAT
194 ACCCACGAAACGAGCGTGCGGGCG-CTGAGCCGAC-CAGAGAGGCATAATGCACAAGCCGGGGAT
* * * * * *
34896006 CAACCCGGTCCCCCTCTACGTACTATCGGTCCCGCTGCCATAGCCCTCAG-TCTGGTT-GG
257 CAACCCAGT-CCCCTCTACGTACTACCGGTCCCGCTACCACAACCCTC-GTTCCGGTTGGG
* * * *
34896065 GCTTAGACATGG-ATGAACTCCCTATGCCTAAACCAAACCATGAAACAGGCGTGCAGGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCAGGCGCTCAG
* * *
34896129 TCGGTCGGAAAGGTAGAATGCGCAAGCCGGTAGATCGGCCTGGTCCCCCT
66 TCGGTCGGAGAGGCAGAATGCGCAAGCCGG--GATCGACCTGGTCCCCCT
34896179 CTTACGTGCT
Statistics
Matches: 366, Mismatches: 55, Indels: 17
0.84 0.13 0.04
Matches are distributed among these distances:
314 23 0.06
315 167 0.46
316 122 0.33
317 53 0.14
318 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (315 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCAGGCGCTCAG
TCGGTCGGAGAGGCAGAATGCGCAAGCCGGGATCGACCTGGTCCCCCTTGCGTGCTACCGATCCT
ACTGTCGCAACCCTCAGTCCAGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAAC
CCACGAAACGAGCGTGCGGGCGCTGAGCCGACCAGAGAGGCATAATGCACAAGCCGGGGATCAAC
CCAGTCCCCTCTACGTACTACCGGTCCCGCTACCACAACCCTCGTTCCGGTTGGG
Found at i:34896712 original size:343 final size:345
Alignment explanation
Indices: 34896186--34897048 Score: 1103
Period size: 343 Copynumber: 2.5 Consensus size: 345
34896176 CCTCTTACGT
* * * * * *
34896186 GCTGTC-GTCCCGTTGCCACAACCCTCGGATCCGGTTGGGGCTTAGACCTGGAATGAACTCCCTA
1 GCTGTCGGTCCTGCTGCCACAACCCTC-GATCCAGCTGGGGCTTAGACATGGAATGAACTCCGTA
* ** ** *
34896250 TGGCCTAAGCCACCCATAGAAACGGGCG-GCGGGCACTCAGCCGATCGGAGAGGCAGAATGTGCA
65 T-GCCTAAGCCACCCAT-GAAACGAGCGTGCTAGTGCTCAGCCGATCGGAGAGGCAGAATGCGCA
* * * * * * *
34896314 AGCCGAGGATCGGCTTAGT-CCCCCTGTGTGCTG-CTGATCGTACTGCCATAAGCCTCGATCCGA
128 AGCCGGGGATCGGCTCAGTCCCCCCTGCGTGCTGTC-GATCCTGCTACCACAAGCCTCGATCCGA
* * *
34896377 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGAGATG-ACTTCATATGCCTAAGT
192 TCCAATCTTAGACTGGGAATGAACTCCGTACGCTTAGACTGGAGATGAACTCCATATGCCTAAGT
* * * * *
34896441 CAACCCATGAAACGAGCGTACGGGTGCTTAACCGGTC-GAGAGGTCAGTCGGAGAGGCATAATGC
257 CAACCCATGAAACGAGCGTACGGGTGCTCAACCGATCAGAGAGGCCAGTCGAAGAGGCATAATAC
*
34896505 GCAAGCCAGGGATCAGTCGACCCC
322 GCAAGCCAGGGATCAGCCGACCCC
* * **
34896529 GCTGTCGGTCCTGCTGCCACAACCCTCGATCCAGCTAGGGCTTTGATGTGGAATGAACTCCGTAT
1 GCTGTCGGTCCTGCTGCCACAACCCTCGATCCAGCTGGGGCTTAGACATGGAATGAACTCCGTAT
* *
34896594 GCCTAAGCCACCCATGAAACGAGCGTGCTAGTGCTCAGCCGATCGGAGAGGTAGAATGCACAAGC
66 GCCTAAGCCACCCATGAAACGAGCGTGCTAGTGCTCAGCCGATCGGAGAGGCAGAATGCGCAAGC
* *
34896659 CGGGGATCGGCTC-GATCCCCCCTGCGTGCTGTCGATCCTGCTATCGCAAGCCTCGATCCGATCC
131 CGGGGATCGGCTCAG-TCCCCCCTGCGTGCTGTCGATCCTGCTACCACAAGCCTCGATCCGATCC
* *
34896723 AATCTTAGACTGGGAATGAACTCCGTACGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAA
195 AATCTTAGACTGGGAATGAACTCCGTACGCTTAGACTGGAGATGAACTCCATATGCCTAAGTCAA
*
34896788 CCCATGAAACGAGCGTTCGGGTGCTCAACCGATCAGAGAGGCCAGTCGAAGAGGCATAATACGCA
260 CCCATGAAACGAGCGTACGGGTGCTCAACCGATCAGAGAGGCCAGTCGAAGAGGCATAATACGCA
* * *
34896853 AGCCGGGGATTAGCCGATCCC
325 AGCCAGGGATCAGCCGACCCC
* * * * * *
34896874 ACTGTCGATCTTGCTGCCACAACCCTCGGTCCAGCTGGGGCTTAGACATGCAATGAACTCTGTAT
1 GCTGTCGGTCCTGCTGCCACAACCCTCGATCCAGCTGGGGCTTAGACATGGAATGAACTCCGTAT
* * *
34896939 GCCTAAGCCAACCCACGAAACGAGCGTGCTAGTGCTCAGTCGA-CTGGAGAGGCATAATGCGCAA
66 GCCTAAGCC-ACCCATGAAACGAGCGTGCTAGTGCTCAGCCGATC-GGAGAGGCAGAATGCGCAA
* * *
34897003 GCCAGGGATCAGCTCAGTCCCCCTCTGCGTGCTTCTCGATCCTGCT
129 GCCGGGGATCGGCTCAGTCCCCC-CTGCGTGC-TGTCGATCCTGCT
34897049 GTTGGTCCTA
Statistics
Matches: 449, Mismatches: 59, Indels: 19
0.85 0.11 0.04
Matches are distributed among these distances:
341 10 0.02
342 59 0.13
343 116 0.26
344 68 0.15
345 109 0.24
346 66 0.15
347 9 0.02
348 12 0.03
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (345 bp):
GCTGTCGGTCCTGCTGCCACAACCCTCGATCCAGCTGGGGCTTAGACATGGAATGAACTCCGTAT
GCCTAAGCCACCCATGAAACGAGCGTGCTAGTGCTCAGCCGATCGGAGAGGCAGAATGCGCAAGC
CGGGGATCGGCTCAGTCCCCCCTGCGTGCTGTCGATCCTGCTACCACAAGCCTCGATCCGATCCA
ATCTTAGACTGGGAATGAACTCCGTACGCTTAGACTGGAGATGAACTCCATATGCCTAAGTCAAC
CCATGAAACGAGCGTACGGGTGCTCAACCGATCAGAGAGGCCAGTCGAAGAGGCATAATACGCAA
GCCAGGGATCAGCCGACCCC
Found at i:34896755 original size:26 final size:26
Alignment explanation
Indices: 34896726--34896775 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
34896716 CCGATCCAAT
34896726 CTTAGACTGGGAATGAACTCCGTACG
1 CTTAGACTGGGAATGAACTCCGTACG
*
34896752 CTTAGACTGGGGATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
34896776 TGCCTAAGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTACG
Found at i:34896943 original size:345 final size:343
Alignment explanation
Indices: 34896199--34897048 Score: 1098
Period size: 345 Copynumber: 2.5 Consensus size: 343
34896189 GTCGTCCCGT
* * * *
34896199 TGCCACAACCCTCGGATCCGGTTGGGGCTTAGACCTGGAATGAACTCCCTATGGCCTAAGCCACC
1 TGCCACAACCCTCGG-TCCAGCTGGGGCTTAGACATGGAATGAACTCCGTAT-GCCTAAGCCACC
* ** ** * *
34896264 CATAGAAACGGGCG-GCGGGCACTCAGCCGATCGGAGAGGCAGAATGTGCAAGCCGAGGATCGGC
64 CAT-GAAACGAGCGTGCTAGTGCTCAGCCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGC
* * * * * * *
34896328 TTAGT-CCCCCTGTGTGCTG-CTGATCGTACTGCCATAAGCCTCGATCCGATCCGATCTTAGACT
128 TCAGTCCCCCCTGCGTGCTGTC-GATCCTGCTACCACAAGCCTCGATCCGATCCAATCTTAGACT
* *
34896391 GGGAATGAACTCCGTATGCTTAGACTGGAGATGACTTCATATGCCTAAGTCAACCCATGAAACGA
192 GGGAATGAACTCCGTACGCTTAGACTGGAGATGACTCCATATGCCTAAGTCAACCCATGAAACGA
* * * * *
34896456 GCGTACGGGTGCTTAACCGGTCGAGAGGTCAGTCGGAGAGGCATAATGCGCAAGCCAGGGATCAG
257 GCGTACGGGTGCTCAACCGATCGAGAGGCCAGTCGAAGAGGCATAATACGCAAGCCAGGGATCAG
* * *
34896521 TCGACCCCGCTGTCGGTCCTGC
322 CCGACCCCACTGTCGATCCTGC
* * * **
34896543 TGCCACAACCCTCGATCCAGCTAGGGCTTTGATGTGGAATGAACTCCGTATGCCTAAGCCACCCA
1 TGCCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCACCCA
* *
34896608 TGAAACGAGCGTGCTAGTGCTCAGCCGATCGGAGAGGTAGAATGCACAAGCCGGGGATCGGCTC-
66 TGAAACGAGCGTGCTAGTGCTCAGCCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCA
* *
34896672 GATCCCCCCTGCGTGCTGTCGATCCTGCTATCGCAAGCCTCGATCCGATCCAATCTTAGACTGGG
131 G-TCCCCCCTGCGTGCTGTCGATCCTGCTACCACAAGCCTCGATCCGATCCAATCTTAGACTGGG
* *
34896737 AATGAACTCCGTACGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGC
195 AATGAACTCCGTACGCTTAGACTGGAGATG-ACTCCATATGCCTAAGTCAACCCATGAAACGAGC
* * *
34896802 GTTCGGGTGCTCAACCGATCAGAGAGGCCAGTCGAAGAGGCATAATACGCAAGCCGGGGATTAGC
259 GTACGGGTGCTCAACCGATC-GAGAGGCCAGTCGAAGAGGCATAATACGCAAGCCAGGGATCAGC
* *
34896867 CGATCCCACTGTCGATCTTGC
323 CGACCCCACTGTCGATCCTGC
* *
34896888 TGCCACAACCCTCGGTCCAGCTGGGGCTTAGACATGCAATGAACTCTGTATGCCTAAGCCAACCC
1 TGCCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCC-ACCC
* * * * *
34896953 ACGAAACGAGCGTGCTAGTGCTCAGTCGA-CTGGAGAGGCATAATGCGCAAGCCAGGGATCAGCT
65 ATGAAACGAGCGTGCTAGTGCTCAGCCGATC-GGAGAGGCAGAATGCGCAAGCCGGGGATCGGCT
*
34897017 CAGTCCCCCTCTGCGTGCTTCTCGATCCTGCT
129 CAGTCCCCC-CTGCGTGC-TGTCGATCCTGCT
34897049 GTTGGTCCTA
Statistics
Matches: 437, Mismatches: 58, Indels: 18
0.85 0.11 0.04
Matches are distributed among these distances:
341 10 0.02
342 59 0.14
343 108 0.25
344 64 0.15
345 109 0.25
346 66 0.15
347 9 0.02
348 12 0.03
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.20
Consensus pattern (343 bp):
TGCCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCACCCA
TGAAACGAGCGTGCTAGTGCTCAGCCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCA
GTCCCCCCTGCGTGCTGTCGATCCTGCTACCACAAGCCTCGATCCGATCCAATCTTAGACTGGGA
ATGAACTCCGTACGCTTAGACTGGAGATGACTCCATATGCCTAAGTCAACCCATGAAACGAGCGT
ACGGGTGCTCAACCGATCGAGAGGCCAGTCGAAGAGGCATAATACGCAAGCCAGGGATCAGCCGA
CCCCACTGTCGATCCTGC
Found at i:34897271 original size:26 final size:26
Alignment explanation
Indices: 34897242--34897294 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
34897232 CCGGTCTGAT
34897242 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
34897268 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
34897294 C
1 C
34897295 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34898003 original size:26 final size:26
Alignment explanation
Indices: 34897964--34898016 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
34897954 GGCTCAAAAT
* * *
34897964 CTTAGACTTTGAATGGACTCCATATG
1 CTTAGACATGGAATGAACTCCATATG
*
34897990 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCATATG
34898016 C
1 C
34898017 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:34898291 original size:159 final size:159
Alignment explanation
Indices: 34897989--34898356 Score: 377
Period size: 159 Copynumber: 2.3 Consensus size: 159
34897979 GACTCCATAT
* * *
34897989 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCATATGCATAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAA
* * *
34898054 CCGGCTGGACAGGGCAGAATGCGCAAGCTGAGGGATCAACCCGGTCCCCCTGCATGCTATCGATC
66 CCAGC-GCAAAGGGCAGAATGCGCAAGCTGAGGGATCAACCCGGTCCCCCTGCATGCTATCGATC
**
34898119 CTGCTACTGCAACCCTCAGT-CCGGCT-GA
130 CTGCTACCACAACCCTCAGTCCCGGCTGGA
* * * * * * *
34898147 TCTTAGCACTTGGAATGAACTTCATATGCATAAGTCAACCCATGAAACGAGCGTACGGGCGTTGA
1 GCTTAG-ACATGGAATGAACTCCATATGCATAAGCCAACCCACGAAACGAGCGTACGGGCGCTCA
* * * **
34898212 GCCAGC-CAAAGTGGCATAATGCGCAAGCCTGA-GGATCAGCCCGGTCCCCTCTGTGTGCTATC-
65 ACCAGCGCAAAG-GGCAGAATGCGCAAG-CTGAGGGATCAACCCGGTCCCC-CTGCATGCTATCG
* * * *
34898274 AGTCTTGCTGCCACAACCCTCGGTCCCGGCTGGG
127 A-TCCTGCTACCACAACCCTCAGTCCCGGCTGGA
* * *
34898308 GCTTAGACATGGAATGAACTCCCTAATGACCTAAGCCAAACCCATGAAA
1 GCTTAGACATGGAATGAACTCCAT-ATG-CATAAGCC-AACCCACGAAA
34898357 TAGGCCGTGC
Statistics
Matches: 170, Mismatches: 30, Indels: 15
0.79 0.14 0.07
Matches are distributed among these distances:
157 3 0.02
158 36 0.21
159 84 0.49
160 21 0.12
161 9 0.05
162 6 0.04
163 11 0.06
ACGTcount: A:0.26, C:0.30, G:0.25, T:0.19
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCATATGCATAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAA
CCAGCGCAAAGGGCAGAATGCGCAAGCTGAGGGATCAACCCGGTCCCCCTGCATGCTATCGATCC
TGCTACCACAACCCTCAGTCCCGGCTGGA
Found at i:34898520 original size:26 final size:26
Alignment explanation
Indices: 34898480--34898531 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
34898470 GGTCCGATCT
34898480 TTAGACAGGGAATGAACTCCATATGC
1 TTAGACAGGGAATGAACTCCATATGC
* * *
34898506 TTAGACTGGGGATGAACTCCGTATGC
1 TTAGACAGGGAATGAACTCCATATGC
34898532 CTAAGTTAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (26 bp):
TTAGACAGGGAATGAACTCCATATGC
Found at i:34899394 original size:26 final size:26
Alignment explanation
Indices: 34899356--34899408 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34899346 GGCTCAAACT
34899356 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
34899382 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
34899408 C
1 C
34899409 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:34899680 original size:159 final size:159
Alignment explanation
Indices: 34899391--34899681 Score: 336
Period size: 159 Copynumber: 1.8 Consensus size: 159
34899381 GCTTAGACAT
* * * *
34899391 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGCTCAGTCGGTCGGAG
1 GGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGAGCGCTAAGTCGGCCGAAG
** * ** ** *
34899456 GGACAGAATGCACAAGTCGGGGATCGGCCTGATCCCCCCCTGAGTGCTGTCGATCTTGCTGCCAC
66 GGACAGAATGCACAACCCGAGGATCGGCCTGATCCCCCCCTGAGTGCTACCGATCCCGCTACCAC
34899521 AACCTTCAGTCCGATCCAATCTTAGATTG
131 AACCTTCAGTCCGATCCAATCTTAGATTG
* * * *
34899550 GGAATGAACTCCGTATGCATAAGTCAACCCATGAAATGAGCGTGCGGGCGCTAAG-CAGGCCGAA
1 GGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGAGCGCTAAGTC-GGCCGAA
* * * * * *
34899614 GAGG-CATAATGCACAACCCGAGGATTGG-CTCGGTCCCCCTCTGCGTGCTACCGGTCCCGCTAC
65 G-GGACAGAATGCACAACCCGAGGATCGGCCT-GATCCCCCCCTGAGTGCTACCGATCCCGCTAC
34899677 CACAA
128 CACAA
34899682 TCCTCCATCC
Statistics
Matches: 107, Mismatches: 22, Indels: 6
0.79 0.16 0.04
Matches are distributed among these distances:
158 3 0.03
159 102 0.95
160 2 0.02
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.18
Consensus pattern (159 bp):
GGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGAGCGCTAAGTCGGCCGAAG
GGACAGAATGCACAACCCGAGGATCGGCCTGATCCCCCCCTGAGTGCTACCGATCCCGCTACCAC
AACCTTCAGTCCGATCCAATCTTAGATTG
Found at i:34899861 original size:158 final size:158
Alignment explanation
Indices: 34899382--34899883 Score: 443
Period size: 158 Copynumber: 3.2 Consensus size: 158
34899372 ACTCCATATG
*
34899382 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAA-ACGAGCGTGCGAGCGCTCA
1 CTTAGACATGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAACA-GAGCGTGCG-GCGCTCA
* * * * * * **
34899445 GTCGGTCGGAGG-GACAGAATGCACAAGTCGGGGATCGGCCTGATCCCCCCCTGAGTGCTGTCGA
64 GTCGGCCGG-GGAGGCAAAATGCACAAGCCGGGGATCGGCCTGGT-CCCCCCTGCGTGCTACCGA
* * * * *
34899509 TCTTGCTGCCACAACCTTCAGTCCGATCCAAT
127 TCATGCTGCCACAACCCTCAGTCCGGTTCGAT
* * * *
34899541 CTTAGA-TTGGGAATGAACTCCGTATGCATAAGTCAACCCATGAA-ATGAGCGTGCGGGCGCTAA
1 CTTAGACATGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAACA-GAGCGTGC-GGCGCTCA
** * * * *
34899604 G-CAGGCCGAAGAGGCATAATGCACAACCCGAGGATTGG-CTCGGTCCCCCTCTGCGTGCTACCG
64 GTC-GGCCGGGGAGGCAAAATGCACAAGCCGGGGATCGGCCT-GGTCCCCC-CTGCGTGCTACCG
* ** * * **
34899667 GTCCCGCTACCACAATCCTCCA-TCCGGTT-GGG
126 ATCATGCTGCCACAACCCT-CAGTCCGGTTCGAT
* *
34899699 CTTAGACAT-GGAATGAACTCCCTCTGCCTAAGCCAACCCATGATACAG-GCGTGCTGGCGCTCA
1 CTTAGACATGGGAATGAACTCCGTATGCCTAAGCCAACCCATGA-ACAGAGCGTGC-GGCGCTCA
** *
34899762 GTCGGCCGGGGAGGCAAAATGGGCAAGCCGGGGATCGGCCTGGTCCCCCCTGCGTACTACCGATC
64 GTCGGCCGGGGAGGCAAAATGCACAAGCCGGGGATCGGCCTGGTCCCCCCTGCGTGCTACCGATC
* ** *
34899827 ATGATGCTGCAACCCTCAGTCTGGTTCGAT
129 ATGCTGCCACAACCCTCAGTCCGGTTCGAT
*
34899857 CTTAGAC-TGGGAATGAACTCTGTATGC
1 CTTAGACATGGGAATGAACTCCGTATGC
34899884 TTAGACTGGG
Statistics
Matches: 268, Mismatches: 60, Indels: 31
0.75 0.17 0.09
Matches are distributed among these distances:
156 2 0.01
157 30 0.11
158 118 0.44
159 114 0.43
160 4 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (158 bp):
CTTAGACATGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAACAGAGCGTGCGGCGCTCAGT
CGGCCGGGGAGGCAAAATGCACAAGCCGGGGATCGGCCTGGTCCCCCCTGCGTGCTACCGATCAT
GCTGCCACAACCCTCAGTCCGGTTCGAT
Found at i:34899886 original size:26 final size:26
Alignment explanation
Indices: 34899857--34899912 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
34899847 CTGGTTCGAT
*
34899857 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
34899883 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
34899909 CTTA
1 CTTA
34899913 AGTCAACCCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34900937 original size:26 final size:26
Alignment explanation
Indices: 34900901--34900953 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34900891 CCAGTTCAAT
34900901 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
34900927 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
34900953 C
1 C
34900954 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34902121 original size:26 final size:26
Alignment explanation
Indices: 34902078--34902130 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
34902068 CTGGTCTGAT
*
34902078 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAACGAACTCCATATG
* * *
34902104 CTTAGACTGGGGACGAACTCCGTATG
1 CTTAGACTAGGAACGAACTCCATATG
34902130 C
1 C
34902131 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTAGGAACGAACTCCATATG
Found at i:34904851 original size:26 final size:26
Alignment explanation
Indices: 34904821--34904874 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
34904811 TGGGTAGACT
34904821 TAGGCATACGGAGTTCATCCCCAGTC
1 TAGGCATACGGAGTTCATCCCCAGTC
*
34904847 TAGGCATACGGAGTTCATTCCCAGTC
1 TAGGCATACGGAGTTCATCCCCAGTC
34904873 TA
1 TA
34904875 AGATCAGATC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (26 bp):
TAGGCATACGGAGTTCATCCCCAGTC
Found at i:34905310 original size:158 final size:157
Alignment explanation
Indices: 34904847--34905351 Score: 507
Period size: 158 Copynumber: 3.2 Consensus size: 157
34904837 ATCCCCAGTC
34904847 TAGGCATACGGAGTTCATTCCCA-GTCTAAGATCAGATCGGA-TCGAGGGTTGCGGCAGCAGGAT
1 TAGGCATACGGAGTTCATT-CCATGTCTAAGATCAGATCGGACT-GAGGGTTGCGGCAGCAGGAT
* * * * * * * * *
34904910 CGACAACACACAGGGGGGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGA
64 CGATAGCATACAGGGGGAATCAGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGACGGCTGA
* * *
34904975 GCACCCGCACGCCCATTTTGTGGGTTTGCT
129 GCACCCGCATGCTCATTTCGTGGG-TTGCT
* * ** * * ** * * *
34905005 TAGGCATAGGGAGTTCATTCTATGTCTAAGCCCTAG-CCGAACCAAGGGTTGTGGCAGTAGGACC
1 TAGGCATACGGAGTTCATTCCATGTCTAAGATC-AGATCGGACTGAGGGTTGCGGCAGCAGGATC
* * * * ** * * * * *
34905069 GGTAGCATGCAGAGTGGGACT-AGGTCGATCCTCGGCTTATGCATTATGCCTCTTCGGCCTGCTC
65 GATAGCATACAG-G-GGGAATCAGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGACGGCTG
**
34905133 AATACCCGCATGCTCATTTCGTGGGTTGACT
128 AGCACCCGCATGCTCATTTCGTGGGTTG-CT
* * * *
34905164 TATGCATACGGAGTTCATTCCCA-GTCTAAGATCAGATCGGACTGAGGGTTGCAGTAGCAAGATC
1 TAGGCATACGGAGTTCATT-CCATGTCTAAGATCAGATCGGACTGAGGGTTGCGGCAGCAGGATC
*
34905228 GATAGCATACAGGGGGAATCAGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGAACGGCTGAG
65 GATAGCATACAGGGGGAATCAGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGACGGCTGAG
* *
34905293 CGCCCGCTTGCTCATTTCGTGGGTTGGCT
130 CACCCGCATGCTCATTTCGTGGGTT-GCT
34905322 TAGGCATACGGAGTTCATTCCATGTCTAAG
1 TAGGCATACGGAGTTCATTCCATGTCTAAG
34905352 CATACAGAGT
Statistics
Matches: 269, Mismatches: 67, Indels: 22
0.75 0.19 0.06
Matches are distributed among these distances:
157 10 0.04
158 143 0.53
159 111 0.41
160 5 0.02
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (157 bp):
TAGGCATACGGAGTTCATTCCATGTCTAAGATCAGATCGGACTGAGGGTTGCGGCAGCAGGATCG
ATAGCATACAGGGGGAATCAGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGACGGCTGAGC
ACCCGCATGCTCATTTCGTGGGTTGCT
Found at i:34906461 original size:159 final size:158
Alignment explanation
Indices: 34906088--34906510 Score: 361
Period size: 159 Copynumber: 2.7 Consensus size: 158
34906078 AAGCATACAA
* * * *
34906088 AGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGCAA-GATCGGCAGCACGCA
1 AGTTCATTCACAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAG-AAGGATCGACAGCACGAA
* * * * * * *
34906152 GGAAGGATCGAGTCGATCCCCGACTTGCGCATTCTGCCTCTCCAGTCGGTTGAGCACCCGCACGC
65 GGAAGGATCGAGCCGATCCCCGACTTACGCATTATGCCTCTCCAGTCGGCTCAACACCCGCACAC
* * *
34906217 CTGTTTCGTGGGTTGGCTTAGGCACAGGG
130 CTGTTTCGTGGGATGACTTAGGCACACGG
** * ** * * * ** *
34906246 AGTTCATTCA-ATGTCTAAGCCCCAGTTC-GATCGAGGGTTGTGGTAGTGGGACCGACAGCACGA
1 AGTTCATTCACA-GTCTAAG-ATCGGACCAGACCGAGGGTTGCGGCAGAAGGATCGACAGCACGA
** * * * * * *
34906309 AGAGGGGGATCGTGCCGATCCTCGACTTACGGATTATGCCTCTTCGGTCGGCTCAACGCCCGCAC
64 AG-GAAGGATCGAGCCGATCCCCGACTTACGCATTATGCCTCTCCAGTCGGCTCAACACCCGCAC
* * *
34906374 A-CTCGTTTTGTGGGATGACTTATGCATACGG
128 ACCT-GTTTCGTGGGATGACTTAGGCACACGG
* *
34906405 AGTTCATTCACAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGAAGGATCGACAGCAAGCAG
1 AGTTCATTCACAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGAAGGATCGACAGCACGAAG
** * * * *
34906470 GGGGGAT-TAGGTCGATCCCCGACTTGCGCATTCTGCCTCTC
66 GAAGGATCGA-GCCGATCCCCGACTTACGCATTATGCCTCTC
34906511 TGATCGACTG
Statistics
Matches: 200, Mismatches: 57, Indels: 16
0.73 0.21 0.06
Matches are distributed among these distances:
157 1 0.00
158 80 0.40
159 118 0.59
160 1 0.00
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.22
Consensus pattern (158 bp):
AGTTCATTCACAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGAAGGATCGACAGCACGAAG
GAAGGATCGAGCCGATCCCCGACTTACGCATTATGCCTCTCCAGTCGGCTCAACACCCGCACACC
TGTTTCGTGGGATGACTTAGGCACACGG
Found at i:34906559 original size:158 final size:157
Alignment explanation
Indices: 34906088--34906571 Score: 451
Period size: 158 Copynumber: 3.1 Consensus size: 157
34906078 AAGCATACAA
* * *
34906088 AGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGCAA-GATCGGCAGCACGCA
1 AGTTCATTCACAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAG-AAGGATCGACAGCACGCA
** * *
34906152 GGAAGGATCGAGTCGATCCCCGACTTGCGCATTCTGCCTCTC-CAGTCGGTTGAGCACCCGCACG
65 GGGGGGATCGAGTCGATCCCCGACTTGCGCATTCTGCCTCTCTGA-TCGGCTGAGCACCCGCACG
* *
34906216 C-CTGTTTCGTGGGTTGGCTTAGGCACAGGG
129 CTCT-TTT-GTGGGTTGGCTTAGGCATACGG
** * ** * * * ** * *
34906246 AGTTCATTCA-ATGTCTAAGCCCCAGTTC-GATCGAGGGTTGTGGTAGTGGGACCGACAGCACGA
1 AGTTCATTCACA-GTCTAAG-ATCGGACCAGACCGAGGGTTGCGGCAGAAGGATCGACAGCACGC
* * * * * * * * * *
34906309 AGAGGGGGATCGTGCCGATCCTCGACTTACGGATTATGCCTCT-TCGGTCGGCTCAACGCCCGCA
64 AG-GGGGGATCGAGTCGATCCCCGACTTGCGCATTCTGCCTCTCT-GATCGGCTGAGCACCCGCA
* * * *
34906373 CACTCGTTTTGTGGGATGACTTATGCATACGG
127 CGCTC-TTTTGTGGGTTGGCTTAGGCATACGG
*
34906405 AGTTCATTCACAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGAAGGATCGACAGCAAGCAG
1 AGTTCATTCACAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGAAGGATCGACAGCACGCAG
* * * *
34906470 GGGGGAT-TAGGTCGATCCCCGACTTGCGCATTCTGCCTCTCTGATCGACTGAGCACCTGCATGC
66 GGGGGATCGA-GTCGATCCCCGACTTGCGCATTCTGCCTCTCTGATCGGCTGAGCACCCGCACGC
*
34906534 TCATTTTGTGGGTTGGCTTAGGCATATGG
130 TC-TTTTGTGGGTTGGCTTAGGCATACGG
34906563 AGTTCATTC
1 AGTTCATTC
34906572 CATGTCAAAG
Statistics
Matches: 246, Mismatches: 68, Indels: 24
0.73 0.20 0.07
Matches are distributed among these distances:
157 1 0.00
158 125 0.51
159 114 0.46
160 5 0.02
161 1 0.00
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.24
Consensus pattern (157 bp):
AGTTCATTCACAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGAAGGATCGACAGCACGCAG
GGGGGATCGAGTCGATCCCCGACTTGCGCATTCTGCCTCTCTGATCGGCTGAGCACCCGCACGCT
CTTTTGTGGGTTGGCTTAGGCATACGG
Found at i:34906739 original size:185 final size:184
Alignment explanation
Indices: 34906397--34906767 Score: 426
Period size: 185 Copynumber: 2.0 Consensus size: 184
34906387 GATGACTTAT
* * * *
34906397 GCATACGGAGTTCATTCACAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGAAGGATCGACA
1 GCATACGGAGTTCATTCACAATCTAAGATCGGACCAGACCGAGGGTTACGACAGAAGGATAGACA
* * * * *
34906462 GCAAGCAGGGGGGATTAGGTCGATCCCCGACTTGCGCATTCTGCCTCTCTGATCGACTGAGCACC
66 GCAAGCAGGGGGCATCAGGTCGATCCCCGACTTGCACATTCTGCCTCTCCGATCGACTGAACACC
* * ** *
34906527 TGCATGCTCATTTTGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCAAA
131 CGCATACTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCAAA
* * * **
34906581 GCATACGGAGTTCATTC-CTAATCTAAGATCGGATCGGACCGAGGGTTACGACAGCAGGATAGGT
1 GCATACGGAGTTCATTCAC-AATCTAAGATCGGACCAGACCGAGGGTTACGACAGAAGGATAGAC
* * * * *
34906645 AGCACGCAAGGGGGCA-CCGGATCGATCCTC-ATCTTGCACATTCTGCCTCTCCGGTTGACTGAA
65 AGCAAGC-AGGGGGCATCAGG-TCGATCCCCGA-CTTGCACATTCTGCCTCTCCGATCGACTGAA
* * *
34906708 CACCCGC-TCACTCATTTCATGGGTTGGCTTAGGTATACGGAGTTTATTCCATGTCTAA
127 CACCCGCAT-ACTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCAAA
34906766 GC
1 GC
34906768 CCCTGCCGAA
Statistics
Matches: 155, Mismatches: 27, Indels: 9
0.81 0.14 0.05
Matches are distributed among these distances:
183 1 0.01
184 63 0.41
185 91 0.59
ACGTcount: A:0.23, C:0.25, G:0.27, T:0.25
Consensus pattern (184 bp):
GCATACGGAGTTCATTCACAATCTAAGATCGGACCAGACCGAGGGTTACGACAGAAGGATAGACA
GCAAGCAGGGGGCATCAGGTCGATCCCCGACTTGCACATTCTGCCTCTCCGATCGACTGAACACC
CGCATACTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCAAA
Found at i:34908718 original size:26 final size:26
Alignment explanation
Indices: 34908682--34908732 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
34908672 TTGACTTAGG
*
34908682 CATACGGAGTTCATCCCCAGTCTAAT
1 CATACAGAGTTCATCCCCAGTCTAAT
*
34908708 CATACAGAGTTCATTCCCAGTCTAA
1 CATACAGAGTTCATCCCCAGTCTAA
34908733 GATCAGATCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.29, G:0.14, T:0.27
Consensus pattern (26 bp):
CATACAGAGTTCATCCCCAGTCTAAT
Found at i:34909080 original size:26 final size:26
Alignment explanation
Indices: 34909050--34909102 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
34909040 GCTGACTTAG
* *
34909050 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAATTCATCCCCAGTCTAA
* *
34909076 GCATACATAATTCATTCCCAGTCTAA
1 GCATACAGAATTCATCCCCAGTCTAA
34909102 G
1 G
34909103 ATCAGATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAGAATTCATCCCCAGTCTAA
Found at i:34909134 original size:369 final size:368
Alignment explanation
Indices: 34908393--34909286 Score: 1005
Period size: 369 Copynumber: 2.4 Consensus size: 368
34908383 GGACCAACAA
* * * * * * ** *
34908393 CAGGATCAGCAGCAAGC-AGGGGGAGCCGAGTCAATCCCCGACTTACACATTTTGCCTTTCCAAT
1 CAGGATCAGCAGCACGCAAGGGGGA-CCGGGTCAATCCTCGGCTTACTCATTCTGCCACTCCAAC
** * * * * * *
34908457 TAACTGAGCACCCGCACGCTCATTTCGTGGGTTGGTTTAGGCATACGGAGATCATTCCATGTCTA
65 CGATTGAGCGCCCGCACGCTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
* * * *
34908522 AGCCCCAGCCGAATCGAGGGTTGTGGCAGCAAGACTGGCAGTGAGATTGGCAGCACGTAAAGGGG
130 AGCCCCAGCCGGATCGAGGGTTGTGGCAACAAGACTGGAAGTGAGATTGACAGCACGTAAAGGGG
* * * ** * *
34908587 GACTGGGCTGATCCCCTGTTGGCGTATTATGCCTCTCTGACTGACCTCTCCGATCGACTGAGCAC
195 GACTGAGCTAATCCCCGGTTGGCACATTATGCCTCTCGGACTGACCTCTCCGACCGACTGAGCAC
* * *
34908652 CCGCACGCTCATTCCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAATCATACAGAG
260 CCGCACGCTCATTCCATGGGCTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAA
* *
34908717 TTCATTCCCAGTCTAAGATCAGATCAAACCAAGGGGTGTAGCAG
325 TTCATTCCCAGTCTAAGATCAGATCAAACCAAGAGGTGCAGCAG
* * * * *
34908761 CAGGATC-GACAGCACGCAGGGGGGGATCGGGTCGATCC-CGGGCTT-GTGCATTTTGCCACTCC
1 CAGGATCAG-CAGCACGCA-AGGGGGACCGGGTCAATCCTC-GGCTTACT-CATTCTGCCACTCC
* * *
34908823 AACCGGTTGAGCGCCCGCACGTTCGTTTTATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
62 AACCGATTGAGCGCCCGCACGCTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
* * * * *
34908888 CTAAGCCCCAGCCGGACCAAGGGTTGTGGCAACAGGACCTGTAACG-G-GATTGACAGCACGTAG
127 CTAAGCCCCAGCCGGATCGAGGGTTGTGGCAACAAGA-CTGGAA-GTGAGATTGACAGCACGTAA
* * * * * *
34908951 AGGGGTA-TCGAGCTAATCCTCGGCTT-GCACATTATGCCTCTTCGGTC-GATCTTTTCGACCGA
190 AGGGGGACT-GAGCTAATCCCCGG-TTGGCACATTATGCCTC-TCGGACTGACCTCTCCGACCGA
* * * * *
34909013 CTGAGCATCCGTATGCTCGTTTCATGGGCTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
252 CTGAGCACCCGCACGCTCATTCCATGGGCTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
* ** * * * *
34909078 ATACATAATTCATTCCCAGTCTAAGATCAGATCGGACCGAGAGTTGCGGTAG
317 ATACAGAATTCATTCCCAGTCTAAGATCAGATCAAACCAAGAGGTGCAGCAG
*
34909130 CAGGATCAGCAGCACGCAAGGGGGACCGGGTCAATCCTCGGCTTACTCATTCTGCCTCTCCAACC
1 CAGGATCAGCAGCACGCAAGGGGGACCGGGTCAATCCTCGGCTTACTCATTCTGCCACTCCAACC
* * * *
34909195 GATTGAGTGCCCGCACGCCCGTTTTGTGGGTTGCCTTAGGCATAAGGAGTTCATTCCATGTCTAA
66 GATTGAGCGCCCGCACGCTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
*
34909260 GCCCCAGCCAGATCGAGGGTTGTGGCA
131 GCCCCAGCCGGATCGAGGGTTGTGGCA
34909287 GCGGGATCGA
Statistics
Matches: 436, Mismatches: 77, Indels: 26
0.81 0.14 0.05
Matches are distributed among these distances:
367 1 0.00
368 135 0.31
369 281 0.64
370 18 0.04
371 1 0.00
ACGTcount: A:0.22, C:0.27, G:0.27, T:0.24
Consensus pattern (368 bp):
CAGGATCAGCAGCACGCAAGGGGGACCGGGTCAATCCTCGGCTTACTCATTCTGCCACTCCAACC
GATTGAGCGCCCGCACGCTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
GCCCCAGCCGGATCGAGGGTTGTGGCAACAAGACTGGAAGTGAGATTGACAGCACGTAAAGGGGG
ACTGAGCTAATCCCCGGTTGGCACATTATGCCTCTCGGACTGACCTCTCCGACCGACTGAGCACC
CGCACGCTCATTCCATGGGCTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAAT
TCATTCCCAGTCTAAGATCAGATCAAACCAAGAGGTGCAGCAG
Found at i:34910310 original size:26 final size:26
Alignment explanation
Indices: 34910274--34910326 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34910264 GTTGACTTAG
34910274 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
34910300 GCATACAGAGTTCATTCGCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
34910326 G
1 G
34910327 ATCGAATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:34910801 original size:158 final size:156
Alignment explanation
Indices: 34910297--34910801 Score: 441
Period size: 158 Copynumber: 3.2 Consensus size: 156
34910287 ATCCCCAGTC
** * *
34910297 TAAGCATAC-AGAGTTCATTCGCA-GTCTAAGATC-GAATCGGACCGAGGGTTGCGACAACAAGA
1 TAAGCATACGA-AGTTCATTC-CATGTCTAAGATCAG-ATCGGACCGAGGGTTGCGGTAGCAGGA
* * * * * *
34910359 TCGACAGCACGTAGAGGGGACCGAGTCTATCCCCAGCTTACGCATTCTGCCTCTTCCA-CGGACT
63 TCGACAGCACGCAGGGGGGTCCGAGTCAATCCCCGGCTTGCGCATTCTGCCTC-TCCACCGG-CT
* * * *
34910423 GAGTGTCTGCACGCCCGTTTGATGCGTTGGCT
126 AAGTGCCTGCACGCTCGTTTCATG-GTTGGCT
* * * * ** * * * *
34910455 TAGGCATAGGGAGTCCATTCCATGTCTAAGCCCCAG-TCGGATCGAGGGTTGTGGTAGCGGGACC
1 TAAGCATACGAAGTTCATTCCATGTCTAAG-ATCAGATCGGACCGAGGGTTGCGGTAGCAGGATC
* * * *
34910519 GACAGCACGCAGAGGGGGAT-CGAGTCGATCCCCGGCTTGCGCATTATGCCTCTCTGACCGGTTC
65 GACAGCACGCAG-GGGGG-TCCGAGTCAATCCCCGGCTTGCGCATTCTGCCTCTC-CACCGGCT-
* * *
34910583 AA-CGCCTGCACGCTCATTTCATGGGTTGACT
126 AAGTGCCTGCACGCTCGTTTCAT-GGTTGGCT
* * * * * *
34910614 TAGGCATATGGAGTTCATTCC-TAGTCTAAGATCAGATCGGACCAAGGGTTGCGGTAGTAGGATT
1 TAAGCATACGAAGTTCATTCCAT-GTCTAAGATCAGATCGGACCGAGGGTTGCGGTAGCAGGATC
* * *
34910678 GACAGCACGCAGGGGGGTCCGAGCCAATCCCTGGCTTGTGCATTCTGCCTCTCCATCCGGCTAAG
65 GACAGCACGCAGGGGGGTCCGAGTCAATCCCCGGCTTGCGCATTCTGCCTCTCCA-CCGGCTAAG
*
34910743 TGCCCGCACGCTCGTTTCATAGGTTGGCT
129 TGCCTGCACGCTCGTTTCAT-GGTTGGCT
*
34910772 TAAGCATACGAAGTTCATTCCATGACTAAG
1 TAAGCATACGAAGTTCATTCCATGTCTAAG
34910802 CATACGGAGT
Statistics
Matches: 274, Mismatches: 57, Indels: 32
0.75 0.16 0.09
Matches are distributed among these distances:
157 6 0.02
158 146 0.53
159 116 0.42
160 6 0.02
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.24
Consensus pattern (156 bp):
TAAGCATACGAAGTTCATTCCATGTCTAAGATCAGATCGGACCGAGGGTTGCGGTAGCAGGATCG
ACAGCACGCAGGGGGGTCCGAGTCAATCCCCGGCTTGCGCATTCTGCCTCTCCACCGGCTAAGTG
CCTGCACGCTCGTTTCATGGTTGGCT
Found at i:34911766 original size:26 final size:26
Alignment explanation
Indices: 34911730--34911782 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
34911720 GTTGACTTAG
34911730 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
34911756 GCATATGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
34911782 G
1 G
34911783 ATCGGATTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:34912256 original size:26 final size:26
Alignment explanation
Indices: 34912227--34912282 Score: 96
Period size: 26 Copynumber: 2.2 Consensus size: 26
34912217 TGGGTTGGCT
34912227 TAAGCATACGGAGTTCA-TTCCATGTC
1 TAAGCATACGGAGTTCATTTCCA-GTC
34912253 TAAGCATACGGAGTTCATTTCCAGTC
1 TAAGCATACGGAGTTCATTTCCAGTC
34912279 TAAG
1 TAAG
34912283 ATCGGATCGG
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
26 24 0.83
27 5 0.17
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.30
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTTCCAGTC
Found at i:34912947 original size:26 final size:26
Alignment explanation
Indices: 34912911--34912963 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
34912901 GTTGGCTTAG
34912911 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
34912937 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
34912963 G
1 G
34912964 ATTGGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:34913784 original size:158 final size:158
Alignment explanation
Indices: 34913318--34913819 Score: 476
Period size: 158 Copynumber: 3.2 Consensus size: 158
34913308 CCTAGTCTAA
* * * * * * *
34913318 GCATATGGAGTTCATTCC-CAGTCGAAGATTGGACTGGACCGAGGGTTACAGCAGCAGGATCAGC
1 GCATACGGAGTTCATTCCAC-GTCTAAGATTAGACCGGACCGAGGGTTGCAGCAACAGGATCGGC
* * * * * *
34913382 AACACGTAGGGGGGACCGGGCCGATCCCTGGCTTGCGCATTCTGA-CTTTCCGGCTGGCTGAGCG
65 AGCACGTAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCT-ACCTCTCCGACCGGATGAGCG
* *
34913446 TCCGCATGC-CTGTTTCATGGGTTGGCTTAG
129 CCCGCACGCTC-GTTTCATGGGTTGGCTTAG
* * ** *** * ** *
34913476 GCATAGGGAGTTCAATCCATATCTAAGCCCCAG-CCGTACCGAGGGTTGTGGCAACGGGATCGGC
1 GCATACGGAGTTCATTCCACGTCTAAG-ATTAGACCGGACCGAGGGTTGCAGCAACAGGATCGGC
* * * * * * * * *
34913540 AGCATGTAGAGGGGGACCGGGCCGATCCACGGCTTGCGTATTATGCCTCTTCGATC-GACGCAGT
65 AGCACGTAG-GGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGACCGGATG-AGC
* * *
34913604 GCCCGCACGCTCGTTTCGTGGGTTGACTTAT
128 GCCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * *
34913635 GCATACGGAGTTCATTCC-CAGTCTAAGATTAGACCGGATCGAGGGTTGCAGTAACAGGATCGGT
1 GCATACGGAGTTCATTCCAC-GTCTAAGATTAGACCGGACCGAGGGTTGCAGCAACAGGATCGGC
* * * *
34913699 AGCACGTAGGGGGGACCGGGTCGATCCCCAGCTTGCACATTCTACCTCTCCGACCGGTTGAGCGC
65 AGCACGTAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGACCGGATGAGCGC
*
34913764 CCGCACGCTCATTTCATGGGTTGGCTTAG
130 CCGCACGCTCGTTTCATGGGTTGGCTTAG
*
34913793 GCATACGCAGTTCATTCCACGTCTAAG
1 GCATACGGAGTTCATTCCACGTCTAAG
34913820 CATACGGAGT
Statistics
Matches: 265, Mismatches: 69, Indels: 20
0.75 0.19 0.06
Matches are distributed among these distances:
158 145 0.55
159 119 0.45
160 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.31, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCACGTCTAAGATTAGACCGGACCGAGGGTTGCAGCAACAGGATCGGCA
GCACGTAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGACCGGATGAGCGCC
CGCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:34913823 original size:26 final size:26
Alignment explanation
Indices: 34913793--34913845 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34913783 GTTGGCTTAG
34913793 GCATACGCAGTTCATT-CCACGTCTAA
1 GCATACGCAGTTCATTCCCA-GTCTAA
*
34913819 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGCAGTTCATTCCCAGTCTAA
34913845 G
1 G
34913846 ATCGAACGGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGCAGTTCATTCCCAGTCTAA
Found at i:34913970 original size:184 final size:184
Alignment explanation
Indices: 34913635--34914004 Score: 485
Period size: 184 Copynumber: 2.0 Consensus size: 184
34913625 GTTGACTTAT
* * * * *
34913635 GCATACGGAGTTCATTCCCAGTCTAAGATTAGACCGGATCGAGGGTTGCAGTAACAGGATCGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATGAGACCGGACCGAGGGTTGCAGTAACAAGATCCGCA
** * *
34913700 GCACGTAGGGGGGACCGGGTCGATCCCCAGCTTGCACATTCTACCTCTCCGACCGGTTGAGCGCC
66 GCACCCAGGGGGGACCGGGTAGATCCCCAGCTTGCACATTCTACCTCTCCGACCGGCTGAGCGCC
34913765 CGCACGCTCATTTCATGGGTTGGCTTAGGCATACGCAGTTCATTCCACGTCTAA
131 CGCACGCTCATTTCATGGGTTGGCTTAGGCATACGCAGTTCATTCCACGTCTAA
* *
34913819 GCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACGGGACCGAGGGTTG-TG-ACAGCAAGATCC
1 GCATACGGAGTTCATTCCCAGTCTAAGAT-GAGACCGGACCGAGGGTTGCAGTA-A-CAAGATCC
* ** ** * *
34913881 GCAGCACCCAGGGGGGATCGGGTAGATCCCTGGCTTGTGCATTCTGCCTCTCCGACCGGCTGAGG
63 GCAGCACCCAGGGGGGACCGGGTAGATCCCCAGCTTGCACATTCTACCTCTCCGACCGGCTGAGC
* * * * *
34913946 GCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
128 GCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGCAGTTCATTCCACGTCTAA
34914003 GC
1 GC
34914005 CCCAACCGGA
Statistics
Matches: 160, Mismatches: 23, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
182 1 0.01
183 2 0.01
184 156 0.98
185 1 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (184 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATGAGACCGGACCGAGGGTTGCAGTAACAAGATCCGCA
GCACCCAGGGGGGACCGGGTAGATCCCCAGCTTGCACATTCTACCTCTCCGACCGGCTGAGCGCC
CGCACGCTCATTTCATGGGTTGGCTTAGGCATACGCAGTTCATTCCACGTCTAA
Found at i:34914146 original size:159 final size:157
Alignment explanation
Indices: 34913819--34914320 Score: 614
Period size: 159 Copynumber: 3.2 Consensus size: 157
34913809 CCACGTCTAA
* * *
34913819 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACGGGACCGAGGGTTGTGACAGCAAGATCCGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGTGGCAGCAAGATCGGCA
* ** * *
34913884 GCACCCAGGGGGGATCGGGTAGATCCCTGGCTTGTGCATTCTGCCTC-TCCGACCGGCTGAGGGC
66 GCACGCAGGGGGGAT-GGGCCGATCCCTGGCTTGTGCATTCTGCCTCTTCAG-CCGGCTGAGCGC
*
34913948 CCGTACGCTCGTTTCGTGGGTTGGCTTAG
129 CCGTACGCTCATTTCGTGGGTTGGCTTAG
** * *
34913977 GCATACGGAGTTCATT-CCATGTCTAAGCCCCAACCGGACCGAGGGTTGTGGCAGCAAGATCGGT
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCGAACCGGACCGAGGGTTGTGGCAGCAAGATCGGC
* * *
34914041 AGCACGCAGAGGGGGACTGGGCCGATGCCTGGCTTGTGCATTATGCCTCTTCAGCCGGCTCAGCG
65 AGCACGCAG-GGGGGA-TGGGCCGATCCCTGGCTTGTGCATTCTGCCTCTTCAGCCGGCTGAGCG
* * * *
34914106 CCCGTACGCTCATTTCATGTGTTGACTTAT
128 CCCGTACGCTCATTTCGTGGGTTGGCTTAG
* ** * * * * *
34914136 GCATAGGGAGTTCATTCCTGGTCTAAGATCGAACCAGACTGAAGGTTGTGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGTGGCAGCAAGATCGGCA
* * * * * * *
34914201 GCACGTAGGGGGG-TCGACCGATCCCTGGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAACGCCC
66 GCACGCAGGGGGGATGGGCCGATCCCTGGCTTGTGCATTCTGCCTCTTCAGCCGGCTGAGCGCCC
*
34914265 GGACGCTCATTTCGTGGGTTGGCTTAG
131 GTACGCTCATTTCGTGGGTTGGCTTAG
34914292 GCATACGGAGTTCATTCCCAGTCTAAGAT
1 GCATACGGAGTTCATTCCCAGTCTAAGAT
34914321 TTTGAGCCAT
Statistics
Matches: 289, Mismatches: 50, Indels: 12
0.82 0.14 0.03
Matches are distributed among these distances:
156 90 0.31
157 3 0.01
158 66 0.23
159 125 0.43
160 5 0.02
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGTGGCAGCAAGATCGGCA
GCACGCAGGGGGGATGGGCCGATCCCTGGCTTGTGCATTCTGCCTCTTCAGCCGGCTGAGCGCCC
GTACGCTCATTTCGTGGGTTGGCTTAG
Found at i:34914196 original size:501 final size:499
Alignment explanation
Indices: 34913263--34914318 Score: 1230
Period size: 501 Copynumber: 2.1 Consensus size: 499
34913253 AGCTAAGTGT
* * * * * *
34913263 CCGCATGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTTC-TCCCTA-GTCTAAGCATATGG
1 CCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAG-TTCATTCC-ACGTCTAAGCATACGG
* * * * **
34913326 AGTTCATTCCCAGTCGAAGATTGGACTGGACCGAGGGTTACAGCAGCAGGATCAGCAACACGTAG
64 AGTTCATTCCCAGTCGAAGATCGAACGGGACCGAGGGTTACAGCAGCAAGATCAGCAACACCCAG
* * * * * *
34913391 GGGGGACCGGGCCGATCCCTGGCTTGCGCATTCTGACTTTCCGGCTGGCTGAGCGTCCGCATGCC
129 GGGGGACCGGGCAGATCCCTGGCTTGCGCATTCTGACTCTCCGACCGGCTGAGCGCCCGCACGCC
* * *
34913456 TGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCAATCCATATCTAAGCCCCAGCCGTACCGAGGG
194 TGTTTCATGGGTTGGCTTAGGCATACGGAGTTCAATCCATATCTAAGCCCCAACCGGACCGAGGG
** * * *
34913521 TTGTGGCAACGGGATCGGCAGCATGTAGAGGGGGACCGGGCCGATCCACGGCTTGCGTATTATGC
259 TTGTGGCAACAAGATCGGCAGCACGCAGAGGGGGACCGGGCCGATCCACGGCTTGCGCATTATGC
* * * *
34913586 CTCTTCGATCGACGCAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATT
324 CTCTTCGACCGACGCAGCGCCCGCACGCTCATTTCATGGGTTGACTTATGCATACGGAGTTCATT
* * * * **
34913651 CCCAGTCTAAGATTAGACCGGATCGAGGGTTGCAGTAACAGGATCGGTAGCACGTAGGGGGGACC
389 CCCAGTCTAAGATGAGACCAGATCGAAGGTTGCAGCAACAGGATCGACAGCACGTAGGGGGG-CC
** * *
34913716 GGGTCGATCCCCAGCTTGCACATTCTACCTCTCCGACCGGTTGAGCGC
453 -GACCGATCCCCAGCTTGCACATTCTACCTCTCCGACCGGCTGAACGC
*
34913764 CCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGCAGTTCATTCCACGTCTAAGCATACGGAG
1 CCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCACGTCTAAGCATACGGAG
* ** * *
34913829 TTCATTCCCAGTCTAAGATCGAACGGGACCGAGGGTT-GTGACAGCAAGATCCGCAGCACCCAGG
66 TTCATTCCCAGTCGAAGATCGAACGGGACCGAGGGTTACAG-CAGCAAGATCAGCAACACCCAGG
* * * * * *
34913893 GGGGATCGGGTAGATCCCTGGCTTGTGCATTCTGCCTCTCCGACCGGCTGAGGGCCCGTACG-CT
130 GGGGACCGGGCAGATCCCTGGCTTGCGCATTCTGACTCTCCGACCGGCTGAGCGCCCGCACGCCT
* * *
34913957 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGG
195 -GTTTCATGGGTTGGCTTAGGCATACGGAGTTCAATCCATATCTAAGCCCCAACCGGACCGAGGG
* * * * *
34914022 TTGTGGCAGCAAGATCGGTAGCACGCAGAGGGGGACTGGGCCGATGCC-TGGCTTGTGCATTATG
259 TTGTGGCAACAAGATCGGCAGCACGCAGAGGGGGACCGGGCCGAT-CCACGGCTTGCGCATTATG
* * * * *
34914086 CCTCTTC-AGCCGGCTCAGCGCCCGTACGCTCATTTCATGTGTTGACTTATGCATAGGGAGTTCA
323 CCTCTTCGA-CCGACGCAGCGCCCGCACGCTCATTTCATGGGTTGACTTATGCATACGGAGTTCA
** ** *
34914150 TTCCTGGTCTAAGATCGA-ACCAGA-CTGAAGGTTGTGGCAGCAGGATCGACAGCACGTAGGGGG
387 TTCCCAGTCTAAGAT-GAGACCAGATC-GAAGGTTGCAGCAACAGGATCGACAGCACGTAGGGGG
* ** * * * **
34914213 GTCGACCGATCCCTGGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAACGC
450 GCCGACCGATCCCCAGCTTGCACATTCTACCTCTCCGACCGGCTGAACGC
* *
34914263 CCGGACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCC-CAGTCTAAG
1 CCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAC-GTCTAAG
34914319 ATTTTGAGCC
Statistics
Matches: 465, Mismatches: 81, Indels: 20
0.82 0.14 0.04
Matches are distributed among these distances:
498 1 0.00
499 87 0.19
500 10 0.02
501 364 0.78
502 3 0.01
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (499 bp):
CCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCACGTCTAAGCATACGGAG
TTCATTCCCAGTCGAAGATCGAACGGGACCGAGGGTTACAGCAGCAAGATCAGCAACACCCAGGG
GGGACCGGGCAGATCCCTGGCTTGCGCATTCTGACTCTCCGACCGGCTGAGCGCCCGCACGCCTG
TTTCATGGGTTGGCTTAGGCATACGGAGTTCAATCCATATCTAAGCCCCAACCGGACCGAGGGTT
GTGGCAACAAGATCGGCAGCACGCAGAGGGGGACCGGGCCGATCCACGGCTTGCGCATTATGCCT
CTTCGACCGACGCAGCGCCCGCACGCTCATTTCATGGGTTGACTTATGCATACGGAGTTCATTCC
CAGTCTAAGATGAGACCAGATCGAAGGTTGCAGCAACAGGATCGACAGCACGTAGGGGGGCCGAC
CGATCCCCAGCTTGCACATTCTACCTCTCCGACCGGCTGAACGC
Found at i:34915481 original size:158 final size:156
Alignment explanation
Indices: 34915014--34915515 Score: 426
Period size: 158 Copynumber: 3.2 Consensus size: 156
34915004 CACAGCCTCA
* * * * *
34915014 GCATATGGAGTTCACTCCCA-GTCTAAGATCAGACCGTACCGAGGGTTACGACAGTAGGATCGAC
1 GCATATGGAGTTCA-TTCCATGTCTAAGATCAGA-AGGACCGAGGGTTGCGACAGCAGGATCGAC
* * * * *
34915078 AGGACGCAAGGGGCATCGAG-TCGATCCCCAGCTTACGCATTCTGCCTC-TCTGATCGACTGAGC
64 AGCACGCAAGGGGGATCGAGCT-GATCCCCGGCTTGCGCATTCTGCCTCTTC-GGTCGACTGAGC
* *
34915141 ACCCGCACGC-CTGTTTCATGGTTTGGCTTAG
127 GCCCGCAC-CTC-GTTTCATGGGTTGGCTTAG
* * ** * * * * * *
34915172 ACATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCA-GACCAAGGGTTGTGGCAGCGGGACCGAC
1 GCATATGGAGTTCATTCCATGTCTAAG-ATCAG-AAGGACCGAGGGTTGCGACAGCAGGATCGAC
* * * * * * * * *
34915236 AGCATGCAGAGGGGGA-CCAGGCTGATCCCTGACTTGTGCATTATGCCTCTCCGG-CTGGCTCAG
64 AGCACGCA-AGGGGGATCGA-GCTGATCCCCGGCTTGCGCATTCTGCCTCTTCGGTC-GACTGAG
* *
34915299 CGCCTGCACGCTCGTTTCATGGGTTGACTTAG
126 CGCCCGCAC-CTCGTTTCATGGGTTGGCTTAG
* *
34915331 GCATATGGAGTACATTCCCA-GTCTAAGATCAGAATGGATCGAGGGTTGCGACAGCAGGATCGAC
1 GCATATGGAGTTCATT-CCATGTCTAAGATCAGAA-GGACCGAGGGTTGCGACAGCAGGATCGAC
* * *
34915395 AGCACGTAAGGGGGATCGAGCTGATCCCCGGCTTGCGCATTCTACCTCTTCGGTCGATTGAGCGC
64 AGCACGCAAGGGGGATCGAGCTGATCCCCGGCTTGCGCATTCTGCCTCTTCGGTCGACTGAGCGC
* * *
34915460 CCGCACATTCATTTCGTGGGTTGGCTTAG
129 CCGCAC-CTCGTTTCATGGGTTGGCTTAG
**
34915489 GCATGCGGAGTTCATTCCATGTCTAAG
1 GCATATGGAGTTCATTCCATGTCTAAG
34915516 CATACGGAGT
Statistics
Matches: 263, Mismatches: 66, Indels: 30
0.73 0.18 0.08
Matches are distributed among these distances:
157 8 0.03
158 136 0.52
159 113 0.43
160 6 0.02
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (156 bp):
GCATATGGAGTTCATTCCATGTCTAAGATCAGAAGGACCGAGGGTTGCGACAGCAGGATCGACAG
CACGCAAGGGGGATCGAGCTGATCCCCGGCTTGCGCATTCTGCCTCTTCGGTCGACTGAGCGCCC
GCACCTCGTTTCATGGGTTGGCTTAG
Found at i:34915525 original size:26 final size:26
Alignment explanation
Indices: 34915489--34915541 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34915479 GTTGGCTTAG
*
34915489 GCATGCGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
34915515 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
34915541 G
1 G
34915542 AGCAGACCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:34915884 original size:184 final size:184
Alignment explanation
Indices: 34915331--34915885 Score: 639
Period size: 184 Copynumber: 3.0 Consensus size: 184
34915321 GTTGACTTAG
* *
34915331 GCATATGGAGTACATTCCCAGTCTAAGATCAGAAT-GGATCGAGGGTTGCGACAGCAGGATCGAC
1 GCATATGGAGTACATTCCCAGTCTAAGATCAG-ATCGGATCGAGGGTTGCGGCAGCAAGATCGAC
* * * * * *
34915395 AGCACGTAAGGGGGATCGAGCTGATCCCCGGCTTGCGCATTCTACCTCTTCGGTCGATTGAGCGC
65 AGCACGTAGGGGGGATCGGGCCGATCCCCAGCTTGCGCATTCTACCTCTCCGGTCGACTGAGCGC
** * *
34915460 CCGCACATTCATTTCGTGGGTTGGCTTAGGCATGCGGAGTTCATTCCATGTCTAA
130 CCGCACGCTCGTTTCATGGGTTGGCTTAGGCATGCGGAGTTCATTCCATGTCTAA
* * * * ** *
34915515 GCATACGGAGTTCATTCCCAGTCTAAGAGCAGACCAAATCGAGGGTTACGGCAGCAAGATCGACA
1 GCATATGGAGTACATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCGGCAGCAAGATCGACA
* * * * * * * * *
34915580 ACACGTAGGGAGGGACCGGGTCGATCCCGAGCTTGCACATTCTGCCTCTCCGATCGGCTGAGCAC
66 GCACGTAGGG-GGGATCGGGCCGATCCCCAGCTTGCGCATTCTACCTCTCCGGTCGACTGAGCGC
** * *
34915645 CCATACGCTCGTTTCATGGGTTGACTTAGGCATGCGGAGTTCATCCCCA-GTCTAA
130 CCGCACGCTCGTTTCATGGGTTGGCTTAGGCATGCGGAGTTCAT-TCCATGTCTAA
* * ** **
34915700 GCATATGGAGTCCATTCCTAGTCTAAGATCAGATCGGATCGAGGGTTGCGGCAGCATCATCGGTA
1 GCATATGGAGTACATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCGGCAGCAAGATCGACA
* * * * * *
34915765 GCACGCAGGGGGGATCGGGCCGATCCCCAGCTTGCGCATTCTTCCACACCGGCCGACTGAGTGCC
66 GCACGTAGGGGGGATCGGGCCGATCCCCAGCTTGCGCATTCTACCTCTCCGGTCGACTGAGCGCC
* *
34915830 CGCACGCCCGCTTCATGGGTTGGCTTAGGCATAG-GGAGTTCATTCCATGTCTAA
131 CGCACGCTCGTTTCATGGGTTGGCTTAGGCAT-GCGGAGTTCATTCCATGTCTAA
34915884 GC
1 GC
34915886 CCCAGCTGGA
Statistics
Matches: 302, Mismatches: 64, Indels: 10
0.80 0.17 0.03
Matches are distributed among these distances:
183 4 0.01
184 149 0.49
185 146 0.48
186 3 0.01
ACGTcount: A:0.22, C:0.27, G:0.29, T:0.23
Consensus pattern (184 bp):
GCATATGGAGTACATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCGGCAGCAAGATCGACA
GCACGTAGGGGGGATCGGGCCGATCCCCAGCTTGCGCATTCTACCTCTCCGGTCGACTGAGCGCC
CGCACGCTCGTTTCATGGGTTGGCTTAGGCATGCGGAGTTCATTCCATGTCTAA
Found at i:34916215 original size:26 final size:26
Alignment explanation
Indices: 34916176--34916228 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34916166 ATTGGCTTAG
34916176 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
34916202 GCATACGGATTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
34916228 G
1 G
34916229 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:34916924 original size:26 final size:26
Alignment explanation
Indices: 34916894--34916946 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34916884 GTTGACTTAG
34916894 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
34916920 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
34916946 G
1 G
34916947 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:34917261 original size:159 final size:158
Alignment explanation
Indices: 34916921--34917348 Score: 346
Period size: 159 Copynumber: 2.7 Consensus size: 158
34916911 CCAGTCTAAG
* *
34916921 CATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGTAGGATCGATAG
1 CATATGGAGTTCATTCCCAGTCTAAGACCAGACCAGACCGAGGGTTACGGTAGTAGGATCGACAG
*** * * * * *
34916986 CATGTAGGGGGTACCGGGTCGATCCCCGGCTTACGTATTCTACCTCTCCAGCCAGTTGAGCACCC
66 CACACAGGGGGGACCGGGTCGATCCCCGGCTTACGCATTATACCTCTCCAGCCAGGTCAGCACCC
* * *
34917051 GCACGCCCGTTTCATGGGTTGGCTTAGG
131 GCACGCCCGTTTCATGAGTTGACTTAGA
* * * ** * *
34917079 CATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCGGACCGAGGGTTGTGGTTA-TGGGATCGG
1 CATATGGAGTTCATTCCCA-GTCTAAG-ACCAGACCAGACCGAGGGTTACGG-TAGTAGGATCGA
* * *
34917141 CAGCACACAGAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCAG-TAGGGTCAG
63 CAGCACACAG-GGGGGACCGGGTCGATCCCCGGCTTACGCATTATACCTCTCCAGCCA-GGTCAG
* * * * *
34917205 CGCCTGCTCGCTCC-TTTCGTGAGTTGACTTCGA
126 CACCCGCACGC-CCGTTTCATGAGTTGACTTAGA
* * * * * ** * *
34917238 CATATGGAGTTCATTCCCAGTCTATGATCGGACCAAACTGAGGGTTGTGGCT-GCAGGATCGATA
1 CATATGGAGTTCATTCCCAGTCTAAGACCAGACCAGACCGAGGGTTACGG-TAGTAGGATCGACA
** * * * * *
34917302 GCACGTAGAAGAGGACCAGGTCGATCCCCGGCTTATGCATTCTACCT
65 GCACACAG-GGGGGACCGGGTCGATCCCCGGCTTACGCATTATACCT
34917349 TTTCGGCCGA
Statistics
Matches: 211, Mismatches: 50, Indels: 17
0.76 0.18 0.06
Matches are distributed among these distances:
157 3 0.01
158 52 0.25
159 151 0.72
160 5 0.02
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (158 bp):
CATATGGAGTTCATTCCCAGTCTAAGACCAGACCAGACCGAGGGTTACGGTAGTAGGATCGACAG
CACACAGGGGGGACCGGGTCGATCCCCGGCTTACGCATTATACCTCTCCAGCCAGGTCAGCACCC
GCACGCCCGTTTCATGAGTTGACTTAGA
Found at i:34918102 original size:26 final size:26
Alignment explanation
Indices: 34918073--34918125 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34918063 GTTGACTTAG
34918073 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
34918099 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
34918125 G
1 G
34918126 ATTGAACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:34919144 original size:26 final size:26
Alignment explanation
Indices: 34919114--34919169 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
34919104 TGGGTTGACT
*
34919114 TAAGCATACGGAGTTCATCCCCAGTC
1 TAAGCATACAGAGTTCATCCCCAGTC
*
34919140 TAAGCATACAGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTCATCCCCAGTC
34919166 TAAG
1 TAAG
34919170 ATCGAACCAG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATCCCCAGTC
Found at i:34919644 original size:159 final size:157
Alignment explanation
Indices: 34919143--34919645 Score: 451
Period size: 159 Copynumber: 3.2 Consensus size: 157
34919133 CCCAGTCTAA
* * * ** * *
34919143 GCATACAGAGTTCATTCCCAGTCTAAGATCGAACCAGACTGAGGGTTGCAGCATCATGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACTGAAGGTTGTGGCAGCAAGATCGGCA
* * * * * *
34919208 GTACGCA-GGGGGGACCAGGCCGATCCCCGGCTTGCGCATTTTGCCTCCCCAGCCGACTGAGGGC
66 GCACGCAGGGGGGGA-CAGGCCGATCCCCGGCTTGTGCATTATGCCTCTCCGGCCGACTGAGCGC
* * *
34919272 CAGCACACCTGTATCGTGGGTTGGCTTAG
130 C-GCACGCTTGTTTCGTGGGTTGGCTTAG
* * ** * * ** *
34919301 GCAGAGGGAGTTCATT-CCATGTCTAAGCCCCAACCGGA-TGGAGGATTGTGGCAGCGGGACCGG
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCGAACCGGACTGAAGG-TTGTGGCAGCAAGATCGG
* * * * * * * *
34919364 TAGCACGCAGAGGGGGACCGAGCCAATCCTCGGGTTGTGCATTATGCCTCTTCGGCCTG-CTTAG
64 CAGCACGCAGGGGGGGACAG-GCCGATCCCCGGCTTGTGCATTATGCCTCTCCGGCC-GACTGAG
** * * *
34919428 CGCCCGCACGCTCATTTCATGGGTTGACTTAT
127 CG-CCGCACGCTTGTTTCGTGGGTTGGCTTAG
* * * * *
34919460 GCATACGGAGTTCATTCCCAATCTAAGATTGGATCGGACTGAAGGTTGTGGCAGCAAGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACTGAAGGTTGTGGCAGCAAGATCGGCA
* * *
34919525 GCACTCAGGGGGGGATCAGGCCGATCCCCGACTTGTGCATTCTGTCC-CTCCGGCCGACTGAGCG
66 GCACGCAGGGGGGGA-CAGGCCGATCCCCGGCTTGTGCATTATG-CCTCTCCGGCCGACTGAGCG
34919589 CTCGCACGCTTGTTTCGTGGGTTGGCTTAG
129 C-CGCACGCTTGTTTCGTGGGTTGGCTTAG
34919619 GCATACGGAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
34919646 CATATGGAGT
Statistics
Matches: 264, Mismatches: 68, Indels: 25
0.74 0.19 0.07
Matches are distributed among these distances:
157 7 0.03
158 53 0.20
159 189 0.72
160 15 0.06
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACTGAAGGTTGTGGCAGCAAGATCGGCA
GCACGCAGGGGGGGACAGGCCGATCCCCGGCTTGTGCATTATGCCTCTCCGGCCGACTGAGCGCC
GCACGCTTGTTTCGTGGGTTGGCTTAG
Found at i:34919655 original size:26 final size:26
Alignment explanation
Indices: 34919619--34919671 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34919609 GTTGGCTTAG
34919619 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
34919645 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
34919671 G
1 G
34919672 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:34920529 original size:26 final size:26
Alignment explanation
Indices: 34920499--34920551 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
34920489 GTTAACTTAG
34920499 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
34920525 GCATATGGAGTTCATTCCCTGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
34920551 G
1 G
34920552 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:34921751 original size:26 final size:26
Alignment explanation
Indices: 34921715--34921767 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34921705 GTTGACTTAG
*
34921715 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
34921741 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
34921767 G
1 G
34921768 ATCAAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:34922262 original size:26 final size:26
Alignment explanation
Indices: 34922232--34922281 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
34922222 GACTTAGGCA
34922232 TACGGAGTTCATCCCCAGTCTAAGCG
1 TACGGAGTTCATCCCCAGTCTAAGCG
*
34922258 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATCCCCAGTCTAAG
34922282 ATTGGATCGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (26 bp):
TACGGAGTTCATCCCCAGTCTAAGCG
Found at i:34922605 original size:26 final size:26
Alignment explanation
Indices: 34922575--34922627 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
34922565 GTTGACTTAC
34922575 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
34922601 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
34922627 G
1 G
34922628 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:34922637 original size:346 final size:346
Alignment explanation
Indices: 34921964--34922825 Score: 1194
Period size: 346 Copynumber: 2.5 Consensus size: 346
34921954 ACTGACAGCG
* * * * *
34921964 GGATCGACAGCACGCAGAGGGGGACCGAGCTGATCCCTGGCTTGCGCATTATGCCTCTCCAACCG
1 GGATCGGCAGCACGCAG-GGGGGA-CGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCG
* ** * *
34922029 ACTGAGCACTAGCACGCTCGTTTTGTGGGTTGGCTTAGGCATACAGAGTTCATTGCATGTCTAAA
64 GCTGAGCACTAGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC-AAA
* * *
34922094 -CCCCAGCTGGACCGAGGGTTGTGGCAGCAGGATCGACAG-TGGGATCGGCTAATCCCCGGCTTG
128 GCCCCAGCTGGACCGAGGGTTGTGGCAGCAGGACCGACAGCAGGGATCGACTAATCCCCGGCTTG
* * * * *
34922157 CGTATTATGCCTCTTCGACTGGCCTCTCTGATCGGCTGAGCACCCGTACGCTCGTTTCATGGGTT
193 CGCATTATGCCTCTTCGACCGACCTCTCCGACCGGCTGAGCACCCGTACGCTCGTTTCATGGGTT
* * *
34922222 GACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCGTACGGAGTTCATTCCCAGTCTAAGATTGG
258 GACTTACGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGG
* *
34922287 ATCGGATCGAGGCTTGCGATAGTA
323 ATCGGATCGAGGCTTACGACAGTA
* *
34922311 GGATCGGCAGCACGCAGGGGGGATCGAGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGGCCGG
1 GGATCGGCAGCACGCAGGGGGGA-CGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGG
*
34922376 CTGAGCACTAGCACGCTCGTTTCATGGGTCGGCTTAGGCATACGGAGTTCATTCCATGTCAAAGC
65 CTGAGCACTAGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCAAAGC
* * * * *
34922441 CCTAGCTGGATCGAGGGTTGTGGCAGCAGGACCAACAGCAGGG-TCGACTGATCCCTGGCTTGCG
130 CCCAGCTGGACCGAGGGTTGTGGCAGCAGGACCGACAGCAGGGATCGACTAATCCCCGGCTTGCG
*
34922505 CATTATGCCT-TTCCGACCGACCTCTCCGACCGGTTGAGCACCCGTACGCTCGTTTCATGGGTTG
195 CATTATGCCTCTT-CGACCGACCTCTCCGACCGGCTGAGCACCCGTACGCTCGTTTCATGGGTTG
34922569 ACTTACGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
259 ACTTACGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
*
34922634 TCGGATCGAGGCTTACGGCAGTA
324 TCGGATCGAGGCTTACGACAGTA
* * * * * *
34922657 CGATCAGCAGCACGCA-GGGGGACCAGGCCAATCCTCGACTTGCGCATTCTGCCTCTCCGACCGG
1 GGATCGGCAGCACGCAGGGGGGACGA-GCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGG
* ** * * * *
34922721 CTGAGCGCCCGCACACCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
65 CTGAGCACTAGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCAAAGC
* * *
34922786 CCCAACCGGACCGAGGGTTGTGGCAGCGGGACCGACAGCA
130 CCCAGCTGGACCGAGGGTTGTGGCAGCAGGACCGACAGCA
34922826 CGTAGAGGGG
Statistics
Matches: 455, Mismatches: 56, Indels: 10
0.87 0.11 0.02
Matches are distributed among these distances:
344 2 0.00
345 135 0.30
346 299 0.66
347 19 0.04
ACGTcount: A:0.20, C:0.29, G:0.29, T:0.23
Consensus pattern (346 bp):
GGATCGGCAGCACGCAGGGGGGACGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGC
TGAGCACTAGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCAAAGCC
CCAGCTGGACCGAGGGTTGTGGCAGCAGGACCGACAGCAGGGATCGACTAATCCCCGGCTTGCGC
ATTATGCCTCTTCGACCGACCTCTCCGACCGGCTGAGCACCCGTACGCTCGTTTCATGGGTTGAC
TTACGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATC
GGATCGAGGCTTACGACAGTA
Found at i:34922899 original size:159 final size:159
Alignment explanation
Indices: 34922672--34923578 Score: 910
Period size: 159 Copynumber: 5.7 Consensus size: 159
34922662 AGCAGCACGC
* * * * * *
34922672 AGGGGGACCAGGCCAATCCTCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACAC
1 AGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGC
* *
34922737 CCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGG
66 TCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGG
*
34922802 GTTGTGGCAGCGGGACCGACAGCACGTAG
131 GTTGTGGCAGCGGGACCGATAGCACGTAG
* **
34922831 AGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCAACCGGCTGAGCGCATGCACGC
1 AGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGC
* * * * * *
34922896 CCGTTTCGTGGTTTGGCTTAGGCATAGGGAGTTCATTCTATGTCTAAGCCCCAACCAGACCGAGG
66 TCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGG
* *
34922961 GCTATGGCAGCGGGACCGATAGCACGTAG
131 GTTGTGGCAGCGGGACCGATAGCACGTAG
* * * * * * * * *
34922990 AAGGGGACCGGGTCGATCCCCGGCTCGCGCATTATGCCTCTCC-AGTCAGCTCAGCACACGCATG
1 AGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGA-CCGGCTGAGCGCCCGCACG
* ** * * *
34923054 CTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAA-CATCAGACCAGATCA
65 CTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCA-ACCGGACCG
** * * * **
34923117 AGGGTTGCAGTAGCAGGATCGATAGCACACAG
128 AGGGTTGTGGCAGCGGGACCGATAGCACGTAG
* * * * *
34923149 -GGGGGATCAGGTCGATCCCCGGCTTGCCCATTTTGCCTCTCCGACCGACTGAGCGCCCGCACGC
1 AGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGC
* * * **
34923213 TCGTTTCGTGGGTTGGCTTAGGCCATAGGGAGTTCATTCCATGTCTAAG-CCCAGCCGGAATGAG
66 TCGTTTCATGGGTTGGCTTAGG-CATACGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAG
* * *
34923277 GGTTGTGGCAGTGAGACCGACAGCACGTAG
130 GGTTGTGGCAGCGGGACCGATAGCACGTAG
* * * * * * *** * * *
34923307 AGGAGGACTGGGCCGATCCCCGACTTGCGCATTATGCCTCTCTGGTTGGCTCAGTGCCCGCACGT
1 AGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGC
* * ** ** *
34923372 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATCGGACCGGACTGAG
66 TCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAACCGGACCGAG
** ** * * *
34923436 GGTTACGATAGCAGGATCGATAGCACGCAG
130 GGTTGTGGCAGCGGGACCGATAGCACGTAG
* * * * * * * *
34923466 -GGGGGACCGGGTCAATCCTCGGCTTGCGCATTCTGCCTCTTCGGCTGGTTGAGCGCCCACACTC
1 AGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGC
*
34923530 TCGTTTCATGGGTTGGCTTAGGCATACGCAGTTCATTCCATGTCTAAGC
66 TCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
34923579 ATACAGAGTT
Statistics
Matches: 607, Mismatches: 130, Indels: 23
0.80 0.17 0.03
Matches are distributed among these distances:
157 3 0.00
158 212 0.35
159 390 0.64
160 2 0.00
ACGTcount: A:0.19, C:0.29, G:0.30, T:0.22
Consensus pattern (159 bp):
AGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGC
TCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGG
GTTGTGGCAGCGGGACCGATAGCACGTAG
Found at i:34923340 original size:317 final size:314
Alignment explanation
Indices: 34922674--34923578 Score: 1008
Period size: 317 Copynumber: 2.9 Consensus size: 314
34922664 CAGCACGCAG
* * * * * * * * * * * *
34922674 GGGGACCAGGCCAATCCTCGACTTGCGCATTCTGCCTCTCC-GACCGGCTGAGCGCCCGCACACC
1 GGGGACCGGGCCGATCCCCGACTCGCGCATTATGCCTCTCCAG-TCAGCTCAGCACACGCACGCT
* * **
34922738 CGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCCA-ACCGGACCGAG
65 CGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAA-CATCAGACCGGA-CGAG
* * * * * *
34922801 GGTTGTGGCAGCGGGACCGACAGCACGTAGAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCT
127 GGTTG-CGTAGCAGGATCGATAGCACGCAG-GGGGGACCGGGTCGATCCCCGGCTTGCGCATTCT
* ** * *
34922866 GCCTCTCCAACCGGCTGAGCGCATGCACGCCCGTTTCGTGGTTTGGCTTAGGCATAGGGAGTTCA
190 GCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCA
* * * *
34922931 TTCTATGTCTAAGCCCCAACCAGACCGAGGGCTATGGCAGCGGGACCGATAGCACGTAGAA
255 TTCCATGTCTAAG-CCCAACCAGAACGAGGGCTATGGCAGCGAGACCGACAGCACGTAGAA
* * *
34922992 GGGGACCGGGTCGATCCCCGGCTCGCGCATTATGCCTCTCCAGTCAGCTCAGCACACGCATGCTC
1 GGGGACCGGGCCGATCCCCGACTCGCGCATTATGCCTCTCCAGTCAGCTCAGCACACGCACGCTC
* *
34923057 GTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAACATCAGACCAGATCAAGGGT
66 GTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAACATCAGACCGGA-CGAGGGT
* * * * *
34923122 TGCAGTAGCAGGATCGATAGCACACAGGGGGGATCAGGTCGATCCCCGGCTTGCCCATTTTGCCT
130 TGC-GTAGCAGGATCGATAGCACGCAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCT
*
34923187 CTCCGACCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCCATAGGGAGTTCATTC
194 CTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGG-CATAGGGAGTTCATTC
* * * * * *
34923252 CATGTCTAAGCCCAGCCGGAATGAGGGTTGTGGCAGTGAGACCGACAGCACGTAG-A
258 CATGTCTAAGCCCAACCAGAACGAGGGCTATGGCAGCGAGACCGACAGCACGTAGAA
* * ** ** ** * *
34923308 GGAGGACTGGGCCGATCCCCGACTTGCGCATTATGCCTCTCTGGTTGGCTCAGTGCCCGCACGTT
1 GG-GGACCGGGCCGATCCCCGACTCGCGCATTATGCCTCTCCAGTCAGCTCAGCACACGCACGCT
* * *
34923373 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGG
65 CGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAACATCAGACCGGAC-GAGGG
* * *
34923438 TTACGATAGCAGGATCGATAGCACGCAGGGGGGACCGGGTCAATCCTCGGCTTGCGCATTCTGCC
129 TTGCG-TAGCAGGATCGATAGCACGCAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCC
* * * * * * * * *
34923503 TCTTCGGCTGGTTGAGCGCCCACACTCTCGTTTCATGGGTTGGCTTAGGCATACGCAGTTCATTC
193 TCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTC
34923568 CATGTCTAAGC
258 CATGTCTAAGC
34923579 ATACAGAGTT
Statistics
Matches: 494, Mismatches: 85, Indels: 18
0.83 0.14 0.03
Matches are distributed among these distances:
316 30 0.06
317 318 0.64
318 142 0.29
319 4 0.01
ACGTcount: A:0.19, C:0.29, G:0.30, T:0.22
Consensus pattern (314 bp):
GGGGACCGGGCCGATCCCCGACTCGCGCATTATGCCTCTCCAGTCAGCTCAGCACACGCACGCTC
GTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAACATCAGACCGGACGAGGGTT
GCGTAGCAGGATCGATAGCACGCAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCT
CCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCAT
GTCTAAGCCCAACCAGAACGAGGGCTATGGCAGCGAGACCGACAGCACGTAGAA
Found at i:34923581 original size:26 final size:26
Alignment explanation
Indices: 34923551--34923603 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
34923541 GTTGGCTTAG
34923551 GCATAC-GCAGTTCATT-CCATGTCTAA
1 GCATACAG-AGTTCATTCCCA-GTCTAA
34923577 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
34923603 G
1 G
34923604 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:34923722 original size:184 final size:184
Alignment explanation
Indices: 34923393--34923762 Score: 521
Period size: 184 Copynumber: 2.0 Consensus size: 184
34923383 GTTGACTTAG
* * *
34923393 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTACGATAGCAGGATCGATA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTACGACAGCAAGATCGATA
* * *
34923458 GCACGCAGGGGGGACCGGGTCAATCCTCGGCTTGCGCATTCTGCCTCTTCGGCTGGTTGAGCGCC
66 GCACCCAGGGGGGACCGGGTCAATCCTCGGCTTGCGCATTCTGCCTCTCCGGCTGGCTGAGCGCC
* *
34923523 CACACTCTCGTTTCATGGGTTGGCTTAGGCATACGCAGTTCATTCCATGTCTAA
131 CACACGCTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAA
* * * *
34923577 GCATACAGAGTTCATTCCCAGTCTAAGATTGGATCGGA-TCGAGGGTTGCGACAGCAAGATCGGT
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACT-GAGGGTTACGACAGCAAGATCGAT
* * *
34923641 AGTACCCAGGGGGGACCGGGTCGATCC-CTGGCTTGCGCATTCTGCCTCTCCGG-TCGGCTGAGG
65 AGCACCCAGGGGGGACCGGGTCAATCCTC-GGCTTGCGCATTCTGCCTCTCCGGCT-GGCTGAGC
*** *
34923704 GCCTGTACGCTTGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAA
128 GCCCACACGCTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAA
34923761 GC
1 GC
34923763 CCCAACCGGA
Statistics
Matches: 164, Mismatches: 19, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
183 3 0.02
184 161 0.98
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.25
Consensus pattern (184 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTACGACAGCAAGATCGATA
GCACCCAGGGGGGACCGGGTCAATCCTCGGCTTGCGCATTCTGCCTCTCCGGCTGGCTGAGCGCC
CACACGCTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAA
Found at i:34923937 original size:26 final size:26
Alignment explanation
Indices: 34923907--34923959 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34923897 GTTGACTTAG
*
34923907 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGAAGTTCATTCCC-AGTCTAA
34923933 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
34923959 G
1 G
34923960 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:34924191 original size:356 final size:356
Alignment explanation
Indices: 34923515--34924204 Score: 929
Period size: 356 Copynumber: 1.9 Consensus size: 356
34923505 TTCGGCTGGT
* * * * *
34923515 TGAGCGCCCACACTCTCGTTTCATGGGTTGGCTTAGGCATACGCAGTTCATTCCATGTCTAAGCA
1 TGAGCACCCACACGCTCATTTCATGGGTTGACTTAGGCATACGCAGTTCATCCCATGTCTAAGCA
* * * * ** *
34923580 TACAGAGTTCATTCCCAGTCTAAGATTGGATCGGATCGAGGGTTGCGACAGCAAGATCGGTAGTA
66 TACAGAGTTCATTCCCAGTCTAAGATCGGATCAGATCGAGGCTTACGACAGCAAGATCGACAGAA
* * * * * *
34923645 CCCAGGGGGGACCGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGGGCCTGT
131 CCCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCAGCTGAGGGCCCGC
* *
34923710 ACGCTTGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAACCGGACC
196 ACGCCTGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAACCAGACC
* *
34923775 GAAGGTTGTGGCAGCAGGATCGGAAGCACGCAGAAGGGGACCGAGTTGATACTCGGCTTGCGCAT
261 GAAGGTTGTGGCAGCAGGACCGGAAGCACGCAGAAGGGGACCGAGTCGATACTCGGCTTGCGCAT
34923840 TATGCCTCTCCGAATGGCTTGTCCAGCCGGC
326 TATGCCTCTCCGAATGGCTTGTCCAGCCGGC
* *
34923871 TGAGCACCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCC-TAGTCTAAGC
1 TGAGCACCCACACGCTCATTTCATGGGTTGACTTAGGCATACGCAGTTCATCCCAT-GTCTAAGC
*
34923935 ATAC-GAAGTTCATTCCCAGTCTAAGATCGGATCAGATCGAGGCTTACGGCAGCAAGATCGACAG
65 ATACAG-AGTTCATTCCCAGTCTAAGATCGGATCAGATCGAGGCTTACGACAGCAAGATCGACAG
** ** *
34923999 AATGCAGGGGGGATTGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCAGCTGAGTGCCC
129 AACCCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCAGCTGAGGGCCC
* * * * *
34924064 GCACGCCTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTTATTCCATGTCTAAGCCCCAGCTAGA
194 GCACGCCTGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAACCAGA
* * * * * * * *
34924129 TCGAGGGTTGTGGTAGCGGGACCGGTAA-CATGCAGAGGGGGACCGGGTCGAT-CCCTGGCTTGC
259 CCGAAGGTTGTGGCAGCAGGACCGG-AAGCACGCAGAAGGGGACCGAGTCGATACTC-GGCTTGC
34924192 GCATTATGCCTCT
322 GCATTATGCCTCT
34924205 TCGACCGGTT
Statistics
Matches: 287, Mismatches: 43, Indels: 8
0.85 0.13 0.02
Matches are distributed among these distances:
355 4 0.01
356 281 0.98
357 2 0.01
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (356 bp):
TGAGCACCCACACGCTCATTTCATGGGTTGACTTAGGCATACGCAGTTCATCCCATGTCTAAGCA
TACAGAGTTCATTCCCAGTCTAAGATCGGATCAGATCGAGGCTTACGACAGCAAGATCGACAGAA
CCCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCAGCTGAGGGCCCGC
ACGCCTGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAACCAGACC
GAAGGTTGTGGCAGCAGGACCGGAAGCACGCAGAAGGGGACCGAGTCGATACTCGGCTTGCGCAT
TATGCCTCTCCGAATGGCTTGTCCAGCCGGC
Found at i:34924295 original size:159 final size:157
Alignment explanation
Indices: 34924014--34924421 Score: 349
Period size: 159 Copynumber: 2.6 Consensus size: 157
34924004 AGGGGGGATT
* * * * * * * *
34924014 GGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCAGCTGAGTGCCCGCACGC-CTGTTTCA
1 GGGCCGATCCCCGGCTTGCGCATTATGCCTCTCTGACCGGTTCAGCGCCCGCACGCTC-ATTTCA
* ** * * * ** ** * **
34924078 TGGGTTGGCTTAGGCATAGGGAGTTTATTC-CATGTCTAAGCCCCAG-CTAGATCGAGGGTTGTG
65 TGGGTTGACTTAGGCATACAGAGTTCATTCTC-GGTCAAAG-ATCAGACCGGACCGAGGGTTACG
* **
34924141 GTAGCGGGACCGGTAACATGCAGAGGG-GGACC
128 GTAGCAGGACCGACAACA--CAGAGGGAGG-CC
* * *
34924173 GGGTCGATCCCTGGCTTGCGCATTATGCCTCT-TCGACCGGTTCAGCGCCCGTACGCTCATTTCA
1 GGGCCGATCCCCGGCTTGCGCATTATGCCTCTCT-GACCGGTTCAGCGCCCGCACGCTCATTTCA
*
34924237 TGGGTTGACTTATGCATACAGAGTTCATTCTCGGTCAAAGATCAGACCGGACCGAGGGTTACGGT
65 TGGGTTGACTTAGGCATACAGAGTTCATTCTCGGTCAAAGATCAGACCGGACCGAGGGTTACGGT
* * * *
34924302 AGCAGGATCGACAGCACATAGGGAAGGCT
130 AGCAGGACCGACAACACAGAGGG-AGGCC
* ** * * *
34924331 GGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCTGGTCGGTTGAGTGCCCGCACGCTCGTTTCAT
1 GGGCCGATCCCCGGCTTGCGCATTATGCCTCTCTGACCGGTTCAGCGCCCGCACGCTCATTTCAT
* *
34924396 GGGTTGGCTTAGGCATACGGAGTTCA
66 GGGTTGACTTAGGCATACAGAGTTCA
34924422 GTCCATGTCT
Statistics
Matches: 198, Mismatches: 44, Indels: 15
0.77 0.17 0.06
Matches are distributed among these distances:
157 6 0.03
158 81 0.41
159 109 0.55
160 2 0.01
ACGTcount: A:0.17, C:0.27, G:0.31, T:0.24
Consensus pattern (157 bp):
GGGCCGATCCCCGGCTTGCGCATTATGCCTCTCTGACCGGTTCAGCGCCCGCACGCTCATTTCAT
GGGTTGACTTAGGCATACAGAGTTCATTCTCGGTCAAAGATCAGACCGGACCGAGGGTTACGGTA
GCAGGACCGACAACACAGAGGGAGGCC
Found at i:34924437 original size:26 final size:26
Alignment explanation
Indices: 34924408--34924460 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34924398 GTTGGCTTAG
34924408 GCATACGGAGTTCAGT-CCATGTCTAA
1 GCATACGGAGTTCAGTCCCA-GTCTAA
*
34924434 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCAGTCCCAGTCTAA
34924460 G
1 G
34924461 ATTTTGAGTG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCAGTCCCAGTCTAA
Found at i:34925171 original size:26 final size:26
Alignment explanation
Indices: 34925119--34925171 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
34925109 GTTTACTTAG
*
34925119 GCATACAGAGTTCATCCCTAGTGTAA
1 GCATACAGAGTTCATCCCTAGTCTAA
*
34925145 GCATATAGAGTTCATTCCC-AGTCTAA
1 GCATACAGAGTTCA-TCCCTAGTCTAA
34925171 G
1 G
34925172 ATCAAACCAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCTAGTCTAA
Found at i:34926014 original size:184 final size:183
Alignment explanation
Indices: 34925462--34926014 Score: 725
Period size: 183 Copynumber: 3.0 Consensus size: 183
34925452 GTTGACTTAG
* * * * *
34925462 GCATATGGAGTTCATTCCCAGTCTAAGATTGGAA-TGGATCGAGGGTTGCGACAGCAGGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGA-TCGAACCGGACCGAGGGTTGCAACAGCAGGATCGAC
* ** *
34925526 AGCACGCAAGGGGGACTGGGCTGATCCCCGGCTTGCGCATT-TTGCCTCTCCGATCGGTTGAGCG
65 AGCACGC-AGGGGGACCGGGCTGATCCCCGGCTTGCGCATTCTT-CCTCTCCGGCCGGCTGAGCG
* *
34925590 CCCGCACGTTCATTTCGTGGGTTGGCTTAAGCATGCGGAGTTCATTCCATGTCTAA
128 CCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATGCGGAGTTCATTCCATGTCTAA
* * * *
34925646 GCATACGGAGTTCATTCCCAGTCTATGATCGGACCGGACCGAGGGTTGCAGCAGCAGGATTGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCAACAGCAGGATCGACA
* * * * * * * *
34925711 GCACGTAGGGGGACCAGGCTGATCCCGGGCTTACGCATTCTGCCTCTCCTGCCAGCTGAGCACCC
66 GCACGCAGGGGGACCGGGCTGATCCCCGGCTTGCGCATTCTTCCTCTCCGGCCGGCTGAGCGCCC
* * *
34925776 GCACGCTCATTTCGTGGGTTGACTTAGGCATGCGAAGTTCATCCCCA-GTCTAA
131 GCACGCTCATTTCGTGGGTTGGCTTAGGCATGCGGAGTTCAT-TCCATGTCTAA
*
34925829 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCAACAGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCAACAGCAGGATCGACA
* * *
34925894 GCCCGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTTCCTCTCCGGCCGGCTGAGTGCC
66 GCACGCA-GGGGGACCGGGCTGATCCCCGGCTTGCGCATTCTTCCTCTCCGGCCGGCTGAGCGCC
* * * * *
34925959 TGCACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATATCTAA
130 CGCACGCTCATTTCGTGGGTTGGCTTAGGCATGCGGAGTTCATTCCATGTCTAA
34926013 GC
1 GC
34926015 CCCAATCGGA
Statistics
Matches: 314, Mismatches: 50, Indels: 10
0.84 0.13 0.03
Matches are distributed among these distances:
183 161 0.51
184 153 0.49
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (183 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCAACAGCAGGATCGACA
GCACGCAGGGGGACCGGGCTGATCCCCGGCTTGCGCATTCTTCCTCTCCGGCCGGCTGAGCGCCC
GCACGCTCATTTCGTGGGTTGGCTTAGGCATGCGGAGTTCATTCCATGTCTAA
Found at i:34926130 original size:159 final size:158
Alignment explanation
Indices: 34925829--34926338 Score: 436
Period size: 159 Copynumber: 3.2 Consensus size: 158
34925819 CCCAGTCTAA
* ** * * *** * *
34925829 GCATACGGAGTTCATTCCCA-GTCTAAGATCGAACCGGACCGAGGGTTGCAACAGCAGGATCGAT
1 GCATACGGAGTTCATT-CCATATCTAAGCCCCAACCAGACCGAGGGTTGTGGCAGCAGGACCGAC
* ** * * * * * *
34925893 AGCCCGCAGG-GGGGACCGGGCCGATCCCCGGCTTGCGCATTCTTCCTCTCCGGCCGGCTGAGTG
65 AACATGCAGGTGGGGACCAGGCTGATCCCCGACTTGCGCATTATGCCTCTTCGGCC-GCTGAGTG
* *
34925957 CCTGCACGCCCGTTTCGTGGGTTGGCTTAG
129 CCTGTACGCTCGTTTCGTGGGTTGGCTTAG
* * * **
34925987 GCATACGGAGTTCATTCCATATCTAAGCCCCAATCGGACTGAGGGTTGTGGCAGTGGGACCGACA
1 GCATACGGAGTTCATTCCATATCTAAGCCCCAACCAGACCGAGGGTTGTGGCAGCAGGACCGACA
* * * * * *
34926052 GCATGCAGAG-GGGGATCAGGCTGATCCCTGACTTGCGTATTATGCCTCTTCGGCCTGCTAAATG
66 ACATGCAG-GTGGGGACCAGGCTGATCCCCGACTTGCGCATTATGCCTCTTCGGCC-GCTGAGTG
* * *
34926116 CCTGTACGCTCGTTTCATGGGTTGACTTAT
129 CCTGTACGCTCGTTTCGTGGGTTGGCTTAG
** ** *
34926146 GCATACGGAGTTCATTCC-TAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCAGGATCGAC
1 GCATACGGAGTTCATTCCATA-TCTAAGCCCCAACCAGACCGAGGGTTGTGGCAGCAGGACCGAC
* * *
34926210 AACATGCAGGTGGGGACCGGGCTGATCCCCGACTTGCGCATTCTGCCTC-TCTGGCCGACTGAGC
65 AACATGCAGGTGGGGACCAGGCTGATCCCCGACTTGCGCATTATGCCTCTTC-GGCCG-CTGAGT
* * * *
34926274 GCCCGTACGTTCCTTTCATGTCTTGGCTTAGGCTTAG
128 GCCTGTACGCTCGTTTC--G---TGGGTT-GGCTTAG
*
34926311 GCATACGGAGTTCATTCCATGTCTAAGC
1 GCATACGGAGTTCATTCCATATCTAAGC
34926339 ATATGGAGTT
Statistics
Matches: 279, Mismatches: 60, Indels: 19
0.78 0.17 0.05
Matches are distributed among these distances:
157 3 0.01
158 60 0.22
159 181 0.65
164 5 0.02
165 29 0.10
166 1 0.00
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATATCTAAGCCCCAACCAGACCGAGGGTTGTGGCAGCAGGACCGACA
ACATGCAGGTGGGGACCAGGCTGATCCCCGACTTGCGCATTATGCCTCTTCGGCCGCTGAGTGCC
TGTACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:34929283 original size:26 final size:26
Alignment explanation
Indices: 34929227--34929283 Score: 71
Period size: 26 Copynumber: 2.2 Consensus size: 26
34929217 GTGGGTTGAC
*
34929227 TTAAGCATACGGAGTTCATCCCTAGT
1 TTAAGCATACAGAGTTCATCCCTAGT
* *
34929253 CTAAGCATATAGAGTTCATTCCC-AGT
1 TTAAGCATACAGAGTTCA-TCCCTAGT
34929279 TTAAG
1 TTAAG
34929284 ATCGAACTAG
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.32
Consensus pattern (26 bp):
TTAAGCATACAGAGTTCATCCCTAGT
Found at i:34929758 original size:159 final size:159
Alignment explanation
Indices: 34929324--34929760 Score: 402
Period size: 159 Copynumber: 2.8 Consensus size: 159
34929314 GATCAGCAGT
* * * * * * **
34929324 ACGCAG-GGGGGACCAGGCCGATCCTCGGCTTGCGCATTTTGCCTCCCCGATC-GACTGAGCGCC
1 ACGCAGAGGGGGACCGGGCCAATCCCCGGCTTACGCATTATGCCTCTCCGGCCTG-CTGAGCGCC
* *
34929387 CGCACGC-CTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTG
65 CGCACGCTC-GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCTA
* ** *
34929451 GACCGAGGGTTGTGACAGCGGGACCGGCAGC
129 GACCGAAGGTTGTGACAGCAAGACCGACAGC
* * * * *
34929482 ACGCAGAGGGGGACCGGGCCAATCCTCGGCTTACGCATTATGCCTCTTCGGCCTGCTCAGTGCTC
1 ACGCAGAGGGGGACCGGGCCAATCCCCGGCTTACGCATTATGCCTCTCCGGCCTGCTGAGCGCCC
* * * * * **** *
34929547 GCAGGCTCATTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCA-ATCTAAG-ATTGGATCA
66 GCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAGCT-A
* * ** *
34929610 GCCCGAAGGTTGTGGCAGCAAGATTGATAGC
129 GACCGAAGGTTGTGACAGCAAGACCGACAGC
* * ** *
34929641 ACTCAGGGGGGGACCGGGCGGATCCCCGGCTTGCGCATTCTAT-CC-CTCCGGCCTGCTGAGCGC
1 ACGCAGAGGGGGACCGGGCCAATCCCCGGCTTACGCA-T-TATGCCTCTCCGGCCTGCTGAGCGC
* *
34929704 CCACACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
64 CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
34929761 ATATGGAGTT
Statistics
Matches: 221, Mismatches: 49, Indels: 16
0.77 0.17 0.06
Matches are distributed among these distances:
158 11 0.05
159 199 0.90
160 8 0.04
161 3 0.01
ACGTcount: A:0.17, C:0.29, G:0.31, T:0.23
Consensus pattern (159 bp):
ACGCAGAGGGGGACCGGGCCAATCCCCGGCTTACGCATTATGCCTCTCCGGCCTGCTGAGCGCCC
GCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCTAGA
CCGAAGGTTGTGACAGCAAGACCGACAGC
Found at i:34929763 original size:26 final size:26
Alignment explanation
Indices: 34929733--34929811 Score: 124
Period size: 26 Copynumber: 3.0 Consensus size: 26
34929723 GTTGGCTTAG
34929733 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
34929759 GCATATGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
34929785 GCATACGGGGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
34929811 G
1 G
34929812 AGTTTGAGCC
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
26 46 0.94
27 3 0.06
ACGTcount: A:0.25, C:0.23, G:0.22, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:34931556 original size:26 final size:26
Alignment explanation
Indices: 34931504--34931556 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
34931494 GTTTACTTAG
*
34931504 GCATACAGAGTTCATCCCTAGTGTAA
1 GCATACAGAGTTCATCCCTAGTCTAA
*
34931530 GCATATAGAGTTCATTCCC-AGTCTAA
1 GCATACAGAGTTCA-TCCCTAGTCTAA
34931556 G
1 G
34931557 ATCAAACCAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCTAGTCTAA
Found at i:34931894 original size:159 final size:158
Alignment explanation
Indices: 34931617--34932030 Score: 341
Period size: 159 Copynumber: 2.6 Consensus size: 158
34931607 GATCGGGTCA
* * * * * * * * *
34931617 ATCCCC-AGCTTACGCATTCTGCCTCTCTGACCGGTTGAGCACCCGCATGC-CTGTTTAATGGGT
1 ATCCCCGA-CTTACACATTATGCCTCTCCGATCGGCTCAGCACCCGCACGCTC-ATTTCATGGGT
* * * ***** * * * * *
34931680 TGGCTTAGACATAGGGAGTTCATTCCATGTCTAA-GCCCCAGTCGGACCGAGGGTTGTGGCTGCG
64 TGACTTAGGCATACGGAGTTCATTCCATGTCTAATATTGGAAT-GGACTGAAGGTTGTGGCAGCA
*
34931744 GGACCGACAACATGTAGAGGGGGACCAGACCG
128 GGACCGACAACACGTA-AGGGGGACCAGACCG
* * * * * *
34931776 ATCCCCGACTTGCACATTATGCCTCTCCGGTTGGCTCAGCACCCGCATGCTCGTTTCGTGGGTTG
1 ATCCCCGACTTACACATTATGCCTCTCCGATCGGCTCAGCACCCGCACGCTCATTTCATGGGTTG
34931841 ACTTAGGCATACGGAGTTCATTCCCA-GTCTAATATTGGAATGGACTGAAGGTTGTGGCAGCAGG
66 ACTTAGGCATACGGAGTTCATT-CCATGTCTAATATTGGAATGGACTGAAGGTTGTGGCAGCAGG
* * * * * *
34931905 ATCGACAGCACGTAAGGGGGATCGGGCTG
130 ACCGACAACACGTAAGGGGGACCAGACCG
* * ** * * ** *
34931934 ATCCCTGGCTTACGTATTTTGCCTCTCCGATCGGCTGAGTGCCCGCACGTTCATTTCATGGGTTG
1 ATCCCCGACTTACACATTATGCCTCTCCGATCGGCTCAGCACCCGCACGCTCATTTCATGGGTTG
* *
34931999 GCTTAGGCATGCGGAGTTCATTCCATGTCTAA
66 ACTTAGGCATACGGAGTTCATTCCATGTCTAA
34932031 GCATACGGAG
Statistics
Matches: 202, Mismatches: 48, Indels: 11
0.77 0.18 0.04
Matches are distributed among these distances:
157 3 0.01
158 87 0.43
159 105 0.52
160 7 0.03
ACGTcount: A:0.19, C:0.26, G:0.29, T:0.26
Consensus pattern (158 bp):
ATCCCCGACTTACACATTATGCCTCTCCGATCGGCTCAGCACCCGCACGCTCATTTCATGGGTTG
ACTTAGGCATACGGAGTTCATTCCATGTCTAATATTGGAATGGACTGAAGGTTGTGGCAGCAGGA
CCGACAACACGTAAGGGGGACCAGACCG
Found at i:34932202 original size:183 final size:183
Alignment explanation
Indices: 34931898--34932329 Score: 503
Period size: 183 Copynumber: 2.3 Consensus size: 183
34931888 AAGGTTGTGG
* * * * *
34931898 CAGCAGGATCGACAGCACGTAAGGGGGATCGGGCTGATCCCTGGCTTACGTATTTTGCCTCTCCG
1 CAGCAGGATCGACAGCACGT-AGGGGGACCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCG
* ** * * * ** *
34931963 ATCGGCTGAGTGCCCGCACGTTCATTTCATGGGTTGGCTTAGGCATGCGGAGTTCAT-TCCATGT
65 ATCAGCTGAGCACCCGCACGTTCATTCCATGGGTTGACTGAGGCATGCAAAGTTCATCCCCA-GT
* * *
34932027 CTAAGCATACGGAGTTCATTCCCAGTCTATGATC-AGACCAGACCGAGGGTTGCAG
129 CTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGA-ACCAGACCGAGGGTTGCAA
* * * * *
34932082 TAGCAGGATTGACAGCACGTAGGGGGACCAGGCCGATCCCGGGCTTACGCATTCTGCCTCTCCTA
1 CAGCAGGATCGACAGCACGTAGGGGGACCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGA
*
34932147 -CTAGCTGAGCACCTGCACGCTT-ATTCCATGGGTTGACTGAGGCATGCAAAGTTCATCCCCAGT
66 TC-AGCTGAGCACCCGCACG-TTCATTCCATGGGTTGACTGAGGCATGCAAAGTTCATCCCCAGT
* *
34932210 CTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGAACCGGACTGAGGGTTGCAA
129 CTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCAA
* * * ** *
34932265 CAGCAGGATCGATAGCCCGTAGGGGGGACCGGGCCGATCCCCGGCTTGCGTTTTCTTCCTCTCCG
1 CAGCAGGATCGACAGCACGTA-GGGGGACCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCG
34932330 GCTGGCTGAG
Statistics
Matches: 208, Mismatches: 35, Indels: 10
0.82 0.14 0.04
Matches are distributed among these distances:
182 1 0.00
183 147 0.71
184 60 0.29
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.24
Consensus pattern (183 bp):
CAGCAGGATCGACAGCACGTAGGGGGACCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGA
TCAGCTGAGCACCCGCACGTTCATTCCATGGGTTGACTGAGGCATGCAAAGTTCATCCCCAGTCT
AAGCATACAGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCAA
Found at i:34932522 original size:159 final size:160
Alignment explanation
Indices: 34932347--34932709 Score: 387
Period size: 159 Copynumber: 2.3 Consensus size: 160
34932337 GAGTGCCCAC
* * * * * *
34932347 ACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATA-TCCAAGCCCTAATCGGAC
1 ACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATAGTCCAAGACCGAACCAGAC
* * * *
34932411 TGAGGGTTGTGGCAGCGGGACCGACAGCATGCAGAG-GGGGATCAGGCTGATCC-CTGACTTGCG
66 CGAGGGTTGTGGCAGCAGGACCGACAACATGCAG-GTGGGGATCAGGCCGATCCTC-GACTTGCG
* *
34932474 TATTATGCCTCTTCGGCCTG-CT-AAACGCCTGT
129 CATTATGCCTCTTCGGCC-GACTGAAA-GCCCGT
* * * * * * *
34932506 ACGCTCGTTTCATGGGTTGACTTATGCATACGAAGTTCATTCC-TAGTCTAAGATCGGACCAGAC
1 ACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATAGTCCAAGACCGAACCAGAC
* * *
34932570 CGAGGGTTGTGGCAGCAGGATCGACAACATGCAGGTGGGGATCGGGCCGATCCTCGGCTTGCGCA
66 CGAGGGTTGTGGCAGCAGGACCGACAACATGCAGGTGGGGATCAGGCCGATCCTCGACTTGCGCA
* * *
34932635 TTCTGCCTCTTTGGCCGACTGAGAGCCCGT
131 TTATGCCTCTTCGGCCGACTGAAAGCCCGT
* ** *
34932665 ACGCTCCTTTCGTGTCTTGGCTTAGGCATACAGAGTTCATTCCAT
1 ACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT
34932710 GTATAAGCAT
Statistics
Matches: 165, Mismatches: 33, Indels: 11
0.79 0.16 0.05
Matches are distributed among these distances:
158 4 0.02
159 157 0.95
160 4 0.02
ACGTcount: A:0.19, C:0.26, G:0.29, T:0.26
Consensus pattern (160 bp):
ACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATAGTCCAAGACCGAACCAGAC
CGAGGGTTGTGGCAGCAGGACCGACAACATGCAGGTGGGGATCAGGCCGATCCTCGACTTGCGCA
TTATGCCTCTTCGGCCGACTGAAAGCCCGT
Found at i:34933447 original size:26 final size:26
Alignment explanation
Indices: 34933408--34933463 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
34933398 TGGGTTGACT
34933408 TAAGCATACAGAGTTCATCCCCAATC
1 TAAGCATACAGAGTTCATCCCCAATC
* * *
34933434 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTCATCCCCAATC
34933460 TAAG
1 TAAG
34933464 ATTGGACCGG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.25
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATCCCCAATC
Found at i:34933764 original size:159 final size:158
Alignment explanation
Indices: 34933593--34933939 Score: 357
Period size: 157 Copynumber: 2.2 Consensus size: 158
34933583 GGGTTGGCGT
* * *
34933593 AGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CTGGACCGAGGGTTGTGGCAGC-GCGATC
1 AGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGGACCGAGGGTTGTGGCAGCAG-GATC
* * * **
34933656 GGCAGCACGCAGAGGGGGA-CTGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGACAGGGTC
65 GACAGCACG--GAGGGGGATC-GGGTCGATCCCCAGCTTACGCATTATGCCTCTCCGACAGACTC
* * *
34933720 AGCGC-CTGCTCGCTCGTTTCGTGGGTTGAGTG
127 AGCGCTC-GCACGCTCATTTCGTGGGTTGACTG
* * * * *
34933752 AGGCATATGGAGTTCATTCCCA-GTCTATG-ATCGGACCGGACCGAGGGTTGTGGCTGCAGGATC
1 AGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCGGACCGAGGGTTGTGGCAGCAGGATC
* * * * * *
34933815 GACAGCATGTAGGGGGATCGGGTCGATCCCCAGCTTACGCATTCTGCCTTTCCGACCGACTGAGC
65 GACAGCACGGAGGGGGATCGGGTCGATCCCCAGCTTACGCATTATGCCTCTCCGACAGACTCAGC
* *
34933880 GCTCGCACGCTCATTTTGTGGGTTGACTT
130 GCTCGCACGCTCATTTCGTGGGTTGACTG
*
34933909 AGGCATACGGAGTTCA-TCCCTAGTCTAAGCA
1 AGGCATACGGAGTTCATTCCAT-GTCTAAGCA
34933940 TACAGAGTTC
Statistics
Matches: 154, Mismatches: 26, Indels: 17
0.78 0.13 0.09
Matches are distributed among these distances:
155 2 0.01
156 1 0.01
157 88 0.57
158 5 0.03
159 54 0.35
160 4 0.03
ACGTcount: A:0.18, C:0.27, G:0.32, T:0.23
Consensus pattern (158 bp):
AGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGGACCGAGGGTTGTGGCAGCAGGATCG
ACAGCACGGAGGGGGATCGGGTCGATCCCCAGCTTACGCATTATGCCTCTCCGACAGACTCAGCG
CTCGCACGCTCATTTCGTGGGTTGACTG
Found at i:34933913 original size:157 final size:156
Alignment explanation
Indices: 34933437--34933937 Score: 422
Period size: 159 Copynumber: 3.2 Consensus size: 156
34933427 CCCAATCTAA
* * ** * *
34933437 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGATCGAGGGTTACGG-TAGCAGGATCAAT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCT-GCAGGATCGAC
* * * * * * * * *
34933501 AGCACGTAAGGGGGATAGGGCCGATCCTCAGCATACGTATTTTACCTCTT-CGGCCGGTTGAGCA
65 AGCACGT-AGGGGGATCGGGTCGATCCCCAGCTTACGCATTATGCCT-TTCCGACCGGCTGAGC-
* * * * * * *
34933565 CCCGCACACACATTGCATGGGTTGGCGTAG
127 GCCGCACGCTCATTTCGTGGGTTGACTTAG
* * ** * *
34933595 GCATAGGGAGTTCATT-CCATGTCTAAG-CCCCAGCTGGACCGAGGGTTGTGGCAGC-GCGATCG
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGA-CCGGACCGAGGGTTGTGGCTGCAG-GATCG
* * * * * * * *
34933657 GCAGCACGCAGAGGGGGA-CTGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGACAGGGTCA
63 ACAGCACG--TAGGGGGATC-GGGTCGATCCCCAGCTTACGCATTATGCCTTTCCGACCGGCTGA
* * * *
34933721 GCGCCTGCTCGCTCGTTTCGTGGGTTGAGTGAG
125 GCGCC-GCACGCTCATTTCGTGGGTTGACTTAG
* *
34933754 GCATATGGAGTTCATTCCCAGTCTATGATCGGACCGGACCGAGGGTTGTGGCTGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCTGCAGGATCGACA
* * *
34933819 GCATGTAGGGGGATCGGGTCGATCCCCAGCTTACGCATTCTGCCTTTCCGACCGACTGAGCGCTC
66 GCACGTAGGGGGATCGGGTCGATCCCCAGCTTACGCATTATGCCTTTCCGACCGGCTGAGCGC-C
*
34933884 GCACGCTCATTTTGTGGGTTGACTTAG
130 GCACGCTCATTTCGTGGGTTGACTTAG
34933911 GCATACGGAGTTCA-TCCCTAGTCTAAG
1 GCATACGGAGTTCATTCCC-AGTCTAAG
34933938 CATACAGAGT
Statistics
Matches: 264, Mismatches: 64, Indels: 31
0.74 0.18 0.09
Matches are distributed among these distances:
156 4 0.02
157 94 0.36
158 53 0.20
159 107 0.41
160 6 0.02
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.23
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCTGCAGGATCGACA
GCACGTAGGGGGATCGGGTCGATCCCCAGCTTACGCATTATGCCTTTCCGACCGGCTGAGCGCCG
CACGCTCATTTCGTGGGTTGACTTAG
Found at i:34933947 original size:26 final size:26
Alignment explanation
Indices: 34933911--34933963 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34933901 GTTGACTTAG
*
34933911 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
34933937 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
34933963 G
1 G
34933964 ATCAGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:34934627 original size:26 final size:26
Alignment explanation
Indices: 34934588--34934640 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34934578 GTTGACTTAG
34934588 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
34934614 GCATACGGATTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
34934640 G
1 G
34934641 ATCGAACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:34935012 original size:20 final size:20
Alignment explanation
Indices: 34934987--34935032 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
34934977 TGCGACAACA
* * *
34934987 GGATCGACAGCATGTAGGGG
1 GGATCGACAGCACGCAGAGG
34935007 GGATCGACAGCACGCAGAGG
1 GGATCGACAGCACGCAGAGG
34935027 GGATCG
1 GGATCG
34935033 GGTCGATCCC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.26, C:0.20, G:0.43, T:0.11
Consensus pattern (20 bp):
GGATCGACAGCACGCAGAGG
Found at i:34935171 original size:178 final size:179
Alignment explanation
Indices: 34934836--34935187 Score: 472
Period size: 178 Copynumber: 2.0 Consensus size: 179
34934826 CGGGACCGGT
* * ** * * *
34934836 AGCACGTAGAGGGGGACCGGGTTGATCCCTGGCTTACGCATTATGCCTCTTCGATCGGCTCAGTG
1 AGCACGCAGAGGGGGACCGGGTCGATCCCCAGCTTACGCATTATGCCTCTCCGACCGGCTCAATG
* * *
34934901 CCCGCACGCTCATTTCATTGGTTGACTCATGCATACGTAGTTCATTCCCAGTCTAAGATCGGACC
66 CCCGCACGCTCATTTCATGGGTTGACTCAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
* * * * *
34934966 AGACCGATGGTTGCGACAACAGGATCGACAGCATGTAGGGGGGATCGAC
131 AGACCGAGGGTTACGACAACAGGATCGACAACACGCAGGGGGGATCGAC
* * * *
34935015 AGCACGCAGA-GGGGATCGGGTCGATCCCCAGCTTGCGCATTATGCCTCTCCGGCCTGCTCAATG
1 AGCACGCAGAGGGGGACCGGGTCGATCCCCAGCTTACGCATTATGCCTCTCCGACCGGCTCAATG
* *
34935079 CCCGCACGCTCATTTCGTGGGTTGACTTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
66 CCCGCACGCTCATTTCATGGGTTGACTCAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
* ** *
34935144 GGACCGAGGGTTACGGTAGCAGGATCGACAACACGCAGGGGGGA
131 AGACCGAGGGTTACGACAACAGGATCGACAACACGCAGGGGGGA
34935188 CTAAGTCGAT
Statistics
Matches: 148, Mismatches: 25, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
178 139 0.94
179 9 0.06
ACGTcount: A:0.22, C:0.27, G:0.30, T:0.22
Consensus pattern (179 bp):
AGCACGCAGAGGGGGACCGGGTCGATCCCCAGCTTACGCATTATGCCTCTCCGACCGGCTCAATG
CCCGCACGCTCATTTCATGGGTTGACTCAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
AGACCGAGGGTTACGACAACAGGATCGACAACACGCAGGGGGGATCGAC
Found at i:34935670 original size:26 final size:26
Alignment explanation
Indices: 34935631--34935686 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
34935621 TGGGTTGACT
*
34935631 TAAGCATACGGAGTTCATCCCCAGTC
1 TAAGCATACAGAGTTCATCCCCAGTC
* *
34935657 TAAGCATATAGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTCATCCCCAGTC
34935683 TAAG
1 TAAG
34935687 ATCGAACTAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATCCCCAGTC
Found at i:34935810 original size:355 final size:362
Alignment explanation
Indices: 34935195--34935867 Score: 848
Period size: 355 Copynumber: 1.9 Consensus size: 362
34935185 GGACTAAGTC
* * *
34935195 GATCCCCAGCTTGCGCATTCTGCCTCCCCGACCGACTGAGCACCCACATGCTCGTTTTATGGGTT
1 GATCCCCAGCTTGCGCATTATGCCTCCCCGACCGACTGAGCACCCACACGCTCGTTTCATGGGTT
* * * * * * *
34935260 GGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCTTATGGATTCATTCCCAGTCTAAGATTGGA
66 GACTTAAGCATACAGAGTTCATCCCATGTCTAAGCATATAGATTCATTCCCAGTCTAAGATCGAA
* * *
34935325 CTAGACTGAGGGTTGCAGCAGCAAGGCCAGCAGCAGGATCGACAGCACACAGGGGGCGACTGGGT
131 CTAGACTGAAGGTTGCAGCAGCAAGG-CAGCAGCAGGATC-ACAG---ACAGGGGGCGACTAGGC
* * * *
34935390 TGATCCTCGACTTTCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
191 CGATCCTCGACTTGCGCATTCTGCCTCCCCGATCGACTGAGCGCCCGCACGCTCGTTTCGTGGGT
* **
34935455 TGGCTTAGGCATCCGAAGTTCATTCCATGTCTAAGCCCCAG-TCGGATGGAGGGTTGTGGTAGCA
256 TGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAGCT-GGACCGAGGGTTGTGGTAGCA
34935519 GGATCGACAGTGGGATTGGCAGCATGCAGAGGAGGATCGGGCT
320 GGATCGACAGTGGGATTGGCAGCATGCAGAGGAGGATCGGGCT
* * * * * ** * *
34935562 GATCCCTAGCTTGTGCATTATGCCTCTCCGATCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTT
1 GATCCCCAGCTTGCGCATTATGCCTCCCCGACCGACTGAGCACCCACACGCTCGTTTCATGGGTT
*
34935627 GACTTAAGCATACGGAGTTCATCCCCA-GTCTAAGCATATAGAGTTCATTCCCAGTCTAAGATCG
66 GACTTAAGCATACAGAGTTCAT-CCCATGTCTAAGCATATAGA-TTCATTCCCAGTCTAAGATCG
* *
34935691 AACTAGACTGAAGGTTGC-GACAGC-ATG-ATCAGCA-G-T-AC-G-CAGGGGG-GACTAGGCCG
129 AACTAGACTGAAGGTTGCAG-CAGCAAGGCAGCAGCAGGATCACAGACAGGGGGCGACTAGGCCG
* *
34935747 ATCCTCGGCTTGCGCATTTTGCCTCCCCGATCGACTGAGCGCCCGCACGC-CTGTTTCGTGGGTT
193 ATCCTCGACTTGCGCATTCTGCCTCCCCGATCGACTGAGCGCCCGCACGCTC-GTTTCGTGGGTT
* *
34935811 GGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACCGAGGGTTGTG
257 GGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAGCTGGACCGAGGGTTGTG
34935868 ACAGCGGGAC
Statistics
Matches: 265, Mismatches: 36, Indels: 22
0.82 0.11 0.07
Matches are distributed among these distances:
354 1 0.00
355 114 0.43
356 8 0.03
360 1 0.00
361 2 0.01
363 1 0.00
364 1 0.00
365 6 0.02
367 88 0.33
368 43 0.16
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.25
Consensus pattern (362 bp):
GATCCCCAGCTTGCGCATTATGCCTCCCCGACCGACTGAGCACCCACACGCTCGTTTCATGGGTT
GACTTAAGCATACAGAGTTCATCCCATGTCTAAGCATATAGATTCATTCCCAGTCTAAGATCGAA
CTAGACTGAAGGTTGCAGCAGCAAGGCAGCAGCAGGATCACAGACAGGGGGCGACTAGGCCGATC
CTCGACTTGCGCATTCTGCCTCCCCGATCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCT
TAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAGCTGGACCGAGGGTTGTGGTAGCAGGATCG
ACAGTGGGATTGGCAGCATGCAGAGGAGGATCGGGCT
Found at i:34936167 original size:26 final size:26
Alignment explanation
Indices: 34936137--34936215 Score: 133
Period size: 26 Copynumber: 3.0 Consensus size: 26
34936127 GTTGGCTTAG
34936137 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
34936163 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
34936189 GCATACGGGGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
34936215 G
1 G
34936216 AGTTTGAGCC
Statistics
Matches: 51, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
26 48 0.94
27 3 0.06
ACGTcount: A:0.25, C:0.24, G:0.22, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Done.