Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 385 of 402
Found at i:34936921 original size:26 final size:26
Alignment explanation
Indices: 34936885--34936937 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
34936875 GTTGACTTAG
*
34936885 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
34936911 GCATACGGAGTTCATTCCCGGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
34936937 G
1 G
34936938 ATTGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:34937223 original size:159 final size:158
Alignment explanation
Indices: 34936945--34937286 Score: 463
Period size: 159 Copynumber: 2.2 Consensus size: 158
34936935 AAGATTGGAT
* * *
34936945 CGGATCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGGGGGGATCGGACCGATCCTCAGCTTG
1 CGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGGACCGGACCGATCCTCAGCTTG
* * * * *
34937010 CGCATTCTACCTCTCCAACCGGCTGAGCGCCCGCACACTCGTTTCATGGGTTGGCTTAGGCATAG
66 CGCATTATACCTCCCCAACCGGCTCAGCGCCCGCACACTCATTTCATGGGTTGGCTTAGGCATAC
34937075 GGAGTTCATTCCATGTCTAAG-CCCTAGC
131 GGAGTTCATTCCATGTCTAAGCCCCT-GC
* * * *
34937103 CGGACCGAGGGTTGTGGTAGCGGGATCGACAGCACGCAGAGGGGGACCGGGCCGATGCCT-GGCT
1 CGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAG-GGGGGACCGGACCGAT-CCTCAGCT
* *** *
34937167 TGCGCATTATGCCTCCCCGGTCGGCTCAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCAT
64 TGCGCATTATACCTCCCCAACCGGCTCAGCGCCCGCACACTCATTTCATGGGTTGGCTTAGGCAT
*
34937232 ACGGAGTTCATTCCATGTCTAAGCCCCTGT
129 ACGGAGTTCATTCCATGTCTAAGCCCCTGC
* *
34937262 CGGACCAAGGGTTGTGGCAGTAGGA
1 CGGACCGAGGGTTGTGGCAGCAGGA
34937287 CCGGCAGCGG
Statistics
Matches: 159, Mismatches: 22, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
158 35 0.22
159 117 0.74
160 7 0.04
ACGTcount: A:0.18, C:0.28, G:0.33, T:0.21
Consensus pattern (158 bp):
CGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGGACCGGACCGATCCTCAGCTTG
CGCATTATACCTCCCCAACCGGCTCAGCGCCCGCACACTCATTTCATGGGTTGGCTTAGGCATAC
GGAGTTCATTCCATGTCTAAGCCCCTGC
Found at i:34937441 original size:26 final size:26
Alignment explanation
Indices: 34937411--34937463 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34937401 GTTGACTTAG
34937411 GCATACAAAGTTCATCCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
* *
34937437 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
34937463 G
1 G
34937464 ATCAAACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACAAAGTTCATCCCCAGTCTAA
Found at i:34938024 original size:20 final size:21
Alignment explanation
Indices: 34937979--34938022 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
34937969 GACCGACAGC
34937979 GGGATCGACAACACGCAGAGG
1 GGGATCGACAACACGCAGAGG
*
34938000 GGGATCGACAGCACGTC-GAGG
1 GGGATCGACAACACG-CAGAGG
34938021 GG
1 GG
34938023 ATAAAACGGG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 20 0.95
22 1 0.05
ACGTcount: A:0.27, C:0.23, G:0.43, T:0.07
Consensus pattern (21 bp):
GGGATCGACAACACGCAGAGG
Found at i:34938258 original size:26 final size:26
Alignment explanation
Indices: 34938228--34938280 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
34938218 GTTGACTTAG
34938228 GCATACGGAGTTCA-TCCCCAGTCTAA
1 GCATACGGAGTTCACT-CCCAGTCTAA
34938254 GCATACGGAGTTCACTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
34938280 G
1 G
34938281 ATCATACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTTCACTCCCAGTCTAA
Found at i:34939134 original size:158 final size:158
Alignment explanation
Indices: 34938717--34939163 Score: 431
Period size: 159 Copynumber: 2.8 Consensus size: 158
34938707 GCGATAGTAA
* * * * * * * * * *
34938717 GATCGGCAGCACGCAGA-GGGGACCTGGCCGATCCTCGGCATATGCATTTTGCCTCTCCAGTCGG
1 GATCGACAGCACGCAGAGGGGGATCAGGCCGATCCCCGACTTACGCATTCTACCTCTCCGGTCGG
** * *
34938781 CTGAGCACCCGTACA-CCTGTTTTGTGGGTTGGCTTAGACATAGGGAGTTCATTCCATGTCTAAG
66 CTGAGCACCC--ACACCCTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
* * * *
34938845 CCCTAGACGGATCGAGGGTTGTGGCAACGG
129 CACTAGACGGATCAAGGGTTGCGGCAACAG
* * * * * * *
34938875 GATCGACAGCATGTAGAGGGGGATCGGGCCGATCCTCGACTTATGCGTTCTGCCTCTCCGG-CTG
1 GATCGACAGCACGCAGAGGGGGATCAGGCCGATCCCCGACTTACGCATTCTACCTCTCCGGTC-G
* ** * *
34938939 GCTCAGTGCCCACACGCTAGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCC-TAGTCTAA
65 GCTGAGCACCCACACCCT-GTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAA
* * *
34939003 G-ATTGGACCGGATCAAGGGTTGCGGCAGCAG
128 GCACTAGA-CGGATCAAGGGTTGCGGCAACAG
* ** * *
34939034 GATTGACAGCACGCAG-GGGGGA-CTAGGTTGATCCCCGACTTACGTATTCTACCTCTTCGGTCG
1 GATCGACAGCACGCAGAGGGGGATC-AGGCCGATCCCCGACTTACGCATTCTACCTCTCCGGTCG
34939097 GCTGAGCACCCACACCCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
65 GCTGAGCACCCACACCCT-GTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
34939162 CA
129 CA
34939164 TACGGAGTTC
Statistics
Matches: 235, Mismatches: 44, Indels: 19
0.79 0.15 0.06
Matches are distributed among these distances:
157 4 0.02
158 112 0.48
159 119 0.51
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.25
Consensus pattern (158 bp):
GATCGACAGCACGCAGAGGGGGATCAGGCCGATCCCCGACTTACGCATTCTACCTCTCCGGTCGG
CTGAGCACCCACACCCTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
CTAGACGGATCAAGGGTTGCGGCAACAG
Found at i:34939165 original size:26 final size:26
Alignment explanation
Indices: 34939135--34939188 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
34939125 GTTGGCTTAG
34939135 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
34939161 GCATACGGAGTTCGTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
34939187 GC
1 GC
34939189 TCAGACCAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:34940329 original size:26 final size:26
Alignment explanation
Indices: 34940299--34940351 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34940289 GTTGACTTAG
*
34940299 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATATGAAGTTCATCCCCAGTCTAA
*
34940325 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATATGAAGTTCATCCCCAGTCTAA
34940351 G
1 G
34940352 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATATGAAGTTCATCCCCAGTCTAA
Found at i:34940595 original size:356 final size:356
Alignment explanation
Indices: 34939897--34940552 Score: 859
Period size: 356 Copynumber: 1.8 Consensus size: 356
34939887 ATCCCACCTT
* * * * *
34939897 TCTGGTCGACTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAGGGAGTTCATCCTA
1 TCTGATCGACTGAGCGCCCACACGCTCGTTTCATGGGTTGACTTAGGCATAGGGAGTTCATCCCA
* * *
34939962 AGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGTTTGCAGTAGCAGG
66 AGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGACGATTGCAGTAGCAGG
* * * * *
34940027 ATCGACAGCATGCAGGGGGGATCGAGCCGATCCCCGGCTTGCTCATTCTACCTCTTCGACCGATT
131 ATCGACAGCACGCAGGGGGCACCGAGCCGATCCCCGGCTTGCTCATTCTACCTCTCCGACCGACT
* *
34940092 GAGCACCTGCACGTTCATTTTATGGGTTCGCTTAGGCATACGAAATTCATTCCATGTCTAAGCCC
196 GAGCACCTGCACGTCCATTTCATGGGTTCGCTTAGGCATACGAAATTCATTCCATGTCTAAGCCC
* * *
34940157 CAGCTGAATCGAGGGTTGTGGTAGCAGGACCGGCAGCACGCAAAGGTGGACCAGGCTAATCCCCG
261 CAGCTGAATCGAGGGTTGTGGCAGCAGGACCGACAGCACACAAAGGTGGACCAGGCTAATCCCCG
34940222 ACTTACGCATTATGCCTCTCCGGCCGGCCTC
326 ACTTACGCATTATGCCTCTCCGGCCGGCCTC
* * * *
34940253 TCTGATCGGCTGAGCGCCCACAGGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATCCCC
1 TCTGATCGACTGAGCGCCCACACGCTCGTTTCATGGGTTGACTTAGGCATAGGGAGTTCATCCCA
* * *
34940318 AGTCTAAGCATATGAAGTTCATTCCCAGTCTAAGATCGGACCGGATCGACGATTGCAGTAGCAGG
66 AGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGACGATTGCAGTAGCAGG
* * * * * * * *
34940383 ATCGGCAGCACGCTA-GGGGCACCGGGCTGATCCCTGGCTTG-TGTATTCTGCCTCTCCGATCGG
131 ATCGACAGCACGC-AGGGGGCACCGAGCCGATCCCCGGCTTGCT-CATTCTACCTCTCCGACCGA
* * * * * * *
34940446 CTGATCGCCTGCACGTCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
194 CTGAGCACCTGCACGTCCATTTCATGGGTTCGCTTAGGCATACGAAATTCATTCCATGTCTAAGC
* * * **
34940511 CCTAGCTGGA-CAGAGGGTTGTGGCAGCGGGATTGACAGCACA
259 CCCAGCTGAATC-GAGGGTTGTGGCAGCAGGACCGACAGCACA
34940553 TAGAAGGGGA
Statistics
Matches: 252, Mismatches: 45, Indels: 6
0.83 0.15 0.02
Matches are distributed among these distances:
355 2 0.01
356 249 0.99
357 1 0.00
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.25
Consensus pattern (356 bp):
TCTGATCGACTGAGCGCCCACACGCTCGTTTCATGGGTTGACTTAGGCATAGGGAGTTCATCCCA
AGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGACGATTGCAGTAGCAGG
ATCGACAGCACGCAGGGGGCACCGAGCCGATCCCCGGCTTGCTCATTCTACCTCTCCGACCGACT
GAGCACCTGCACGTCCATTTCATGGGTTCGCTTAGGCATACGAAATTCATTCCATGTCTAAGCCC
CAGCTGAATCGAGGGTTGTGGCAGCAGGACCGACAGCACACAAAGGTGGACCAGGCTAATCCCCG
ACTTACGCATTATGCCTCTCCGGCCGGCCTC
Found at i:34940853 original size:26 final size:26
Alignment explanation
Indices: 34940801--34940853 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34940791 GTTGGCTTAG
*
34940801 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTATAA
34940827 GCATACGGAGTTCATTCCCA-GTATAA
1 GCATACGGAGTTCATT-CCATGTATAA
34940853 G
1 G
34940854 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTATAA
Found at i:34941557 original size:26 final size:26
Alignment explanation
Indices: 34941521--34941573 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34941511 GGGTTGACTG
*
34941521 AGGCATACGGAGTTCATCCCCATTCT
1 AGGCATACGGAGTTCATCCCCAGTCT
*
34941547 AGGCATACGGAGTTCATTCCCAGTCT
1 AGGCATACGGAGTTCATCCCCAGTCT
34941573 A
1 A
34941574 AGATCAGACT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (26 bp):
AGGCATACGGAGTTCATCCCCAGTCT
Found at i:34942342 original size:26 final size:26
Alignment explanation
Indices: 34942304--34942356 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
34942294 GGCTCAAAAT
34942304 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
34942330 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
34942356 C
1 C
34942357 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34942683 original size:159 final size:157
Alignment explanation
Indices: 34942329--34942706 Score: 379
Period size: 157 Copynumber: 2.4 Consensus size: 157
34942319 AACTCCGTAT
* * * * *
34942329 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAATGAGTGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCACTCAG
* * * * **
34942394 CCGGTCGGAGAGGCAGAATGCGCAAGCCGCGGATCGACCCAATCCCCCTGCATGCTGTCGATCCT
66 CAGGTCGAAGAGACAGAATGCGCAAGCCGAGGATCGACCCAATCCCCCTGCATGCTACCGATCCT
** * *
34942459 GCTGTAGTAACCCTCGGACTGATCTAA
131 GCTCCAGTAACCCTCAGACCGATCTAA
* * * *
34942486 TCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTACGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCACTCA
* * ** * *
34942550 GCAGGTCGAAGAGACAGAATGCGCAAGCCGAGGATTGGCCCGGTCCCCCTCTGTATGCTACCGGT
65 GCAGGTCGAAGAGACAGAATGCGCAAGCCGAGGATCGACCCAAT-CCCC-CTGCATGCTACCGAT
* **
34942615 -CTCGCTACCA-TAACCCTCAGTCCGA-CTGGG
128 CCT-GCT-CCAGTAACCCTCAGACCGATCT-AA
* * *
34942645 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCG-AGCGGGCACT
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTA-CGGGCACT
34942707 TAGTCGGTCA
Statistics
Matches: 179, Mismatches: 34, Indels: 14
0.79 0.15 0.06
Matches are distributed among these distances:
156 1 0.01
157 89 0.50
158 9 0.05
159 78 0.44
160 2 0.01
ACGTcount: A:0.26, C:0.29, G:0.27, T:0.18
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCACTCAG
CAGGTCGAAGAGACAGAATGCGCAAGCCGAGGATCGACCCAATCCCCCTGCATGCTACCGATCCT
GCTCCAGTAACCCTCAGACCGATCTAA
Found at i:34942833 original size:26 final size:26
Alignment explanation
Indices: 34942804--34942856 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34942794 CCGGTCTGAT
34942804 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
* *
34942830 CTTAGACTGGGGATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
34942856 C
1 C
34942857 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:34943207 original size:26 final size:26
Alignment explanation
Indices: 34943171--34943249 Score: 97
Period size: 26 Copynumber: 3.0 Consensus size: 26
34943161 CCAGTCCGAT
* *
34943171 CTTAGAATGGGAATGAACTCTGTATG
1 CTTAGACTGGGGATGAACTCTGTATG
** *
34943197 CTTAGACTGGGGATGAACTCCATATA
1 CTTAGACTGGGGATGAACTCTGTATG
34943223 CTTAGACTGGGGATGAACT-TCGTATG
1 CTTAGACTGGGGATGAACTCT-GTATG
34943249 C
1 C
34943250 CTAAGTCAAC
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
26 44 1.00
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCTGTATG
Found at i:34944448 original size:26 final size:27
Alignment explanation
Indices: 34944419--34944473 Score: 94
Period size: 26 Copynumber: 2.1 Consensus size: 27
34944409 ATCCGATCTT
34944419 AGACTGGGAATGAACTCCGTATG-CTA
1 AGACTGGGAATGAACTCCGTATGCCTA
*
34944445 AGACTGGGGATGAACTCCGTATGCCTA
1 AGACTGGGAATGAACTCCGTATGCCTA
34944472 AG
1 AG
34944474 TCAACCCACG
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
26 22 0.81
27 5 0.19
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.22
Consensus pattern (27 bp):
AGACTGGGAATGAACTCCGTATGCCTA
Found at i:34945800 original size:26 final size:26
Alignment explanation
Indices: 34945764--34945816 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34945754 CTGATTAGAT
*
34945764 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
34945790 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
34945816 C
1 C
34945817 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:34946149 original size:26 final size:26
Alignment explanation
Indices: 34946114--34946171 Score: 100
Period size: 26 Copynumber: 2.3 Consensus size: 26
34946104 TCGACCCGGT
34946114 CATAT-CTTAGACTGGGAATGAACTC
1 CATATGCTTAGACTGGGAATGAACTC
34946139 CATATGCTTAGACTGGGAATGAACTC
1 CATATGCTTAGACTGGGAATGAACTC
*
34946165 CGTATGC
1 CATATGC
34946172 CCAAGTCAAC
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
25 5 0.16
26 26 0.84
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (26 bp):
CATATGCTTAGACTGGGAATGAACTC
Found at i:34946872 original size:26 final size:26
Alignment explanation
Indices: 34946834--34946886 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
34946824 TGCTCAAAAT
34946834 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
34946860 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
34946886 C
1 C
34946887 CTAAGACAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:34947321 original size:158 final size:158
Alignment explanation
Indices: 34947028--34947321 Score: 342
Period size: 158 Copynumber: 1.9 Consensus size: 158
34947018 CTGGTTCGAT
* * * * *
34947028 CTTAGACTAGGAATGAACTCTGTATGCATAAGTCAACCCACGAAATGAGCGTGCAAGCACTGAGC
1 CTTAGACTAGGAATGAACTCTCTATGCATAAGCCAACCCACGAAATGAGCGTACAAGCACTCAAC
* * * * ** *
34947093 CAATTGAAGAGGCATAATGCACAAGCCGGGGATCGCCTGGTCCCCCTCTACGTGCTTTCGATCCC
66 CAATAGAAGAGGCAGAATACACAAGCCGAGGATCGCCCAGTCCCCCTCTACGTGCTGTCGATCCC
*
34947158 GCTACCATAACCTTCGGTCCGGCTGGGG
131 ACTACCATAACCTTCGGTCCGGCTGGGG
* ** *
34947186 CTTAGAC-ATGGAATGAACTCTCTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAA
1 CTTAGACTA-GGAATGAACTCTCTATGCATAAGCCAACCCACGAAATGAGCGTACAAGCACTCAA
* ** *
34947250 CCGATCAG-AGAGGCAGAATACGTAAGCCGAGGATCGACCCAGTCCCCCT-TGCGTGCTGTCGAT
65 CCAAT-AGAAGAGGCAGAATACACAAGCCGAGGATCG-CCCAGTCCCCCTCTACGTGCTGTCGAT
*
34947313 CCTACTACC
128 CCCACTACC
34947322 GCAACCCTCG
Statistics
Matches: 111, Mismatches: 22, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
157 1 0.01
158 99 0.89
159 11 0.10
ACGTcount: A:0.26, C:0.30, G:0.24, T:0.20
Consensus pattern (158 bp):
CTTAGACTAGGAATGAACTCTCTATGCATAAGCCAACCCACGAAATGAGCGTACAAGCACTCAAC
CAATAGAAGAGGCAGAATACACAAGCCGAGGATCGCCCAGTCCCCCTCTACGTGCTGTCGATCCC
ACTACCATAACCTTCGGTCCGGCTGGGG
Found at i:34947368 original size:26 final size:26
Alignment explanation
Indices: 34947339--34947391 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
34947329 TCGATCCGAT
*
34947339 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
34947365 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
34947391 C
1 C
34947392 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:34947758 original size:26 final size:26
Alignment explanation
Indices: 34947708--34947758 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
34947698 TGGTTCGATC
*
34947708 TTAGACTGGGAATGAATTCCATATGA
1 TTAGACTGGGAATGAACTCCATATGA
* * *
34947734 TTAGACTGGGGATGAGCTCCGTATG
1 TTAGACTGGGAATGAACTCCATATG
34947759 CCTAAGTGAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGA
Found at i:34947858 original size:368 final size:365
Alignment explanation
Indices: 34947151--34948148 Score: 1132
Period size: 368 Copynumber: 2.7 Consensus size: 365
34947141 TACGTGCTTT
* * * *
34947151 CGATCCCGCTACCATAACCTTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCTC-TATGCCT
1 CGATCCTGCTACCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTC-CGTATGCCT
* * * * * * * * *
34947215 AAGCCAACCCACGAAATGAGCGTACGGGCGCTCAACCGATCAGAGAGGCAGAATACGTAAGCCGA
65 AAGCCAACCCACGAAACGAGCGTACGGGCACTCAGCAGGTCGGAGAGGCAGAATGCGCAAGCCGG
* * *
34947280 GGATCGACCCAGTCCCCCT-TGCGTGCTGTCGATCCTACTACCGCAACCCTCGATC----CGATC
130 GGATCGACCCGGTCCCCCTAT--GTGCTGTCGATCCTGCTACCGCAACCCTCGGTCTGGTCGATC
* *
34947340 TTAGACTAGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCA
193 TTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCA
* * * *
34947405 TGAAACGAGTGTACAGGCGCTCAGTCAACCAGAGAGGTCGATTGGAGAGGCATAATACGCAAGCT
258 TGAAACGAATGTA-AGGCACTCAGTCAACCAGAGAGGTCGATAGGAGAGGCATAATACGCAAGCC
* *** * **
34947470 GGGGATCAGCCCAGTCCCCCTCTGTGTGCTATCGATCCCGCTGT
322 AGGGATCAGCCCAGTCCCCCTCTACATGCTATCAATCCCGCTAC
* * * ** * * *
34947514 TGATCTTGCTGCTGCAACCCTCGGTCTGGCTAGGGCTTAGACATGGAATGTACTCCGTTTGCCTA
1 CGATCCTGCTACCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTA
* ** * * *
34947579 AGCCAACCCACGAAACGAGCGTGCGGGCTTTCAGTAGGTCGGAGAGGTAGAATGCGCAAGCTGGG
66 AGCCAACCCACGAAACGAGCGTACGGGCACTCAGCAGGTCGGAGAGGCAGAATGCGCAAGCCGGG
*
34947644 GATCGACCCGGTCCTCCCTATGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTCTGGTTCGATCT
131 GATCGACCCGGTCC-CCCTATGTGCTGTCGATCCTGCTACCGCAACCCTCGGTCTGG-TCGATCT
* * * * *
34947709 TAGACTGGGAATGAATTCCATATGATTAGACTGGGGATGAGCTCCGTATGCCTAAGTGAACCCAT
194 TAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCAT
* * ** ** * * ** *
34947774 GAAACAAGAATGT-GGGTACTCAGTCGGCTGGAGAGGTCGGTAGGATAGGCATAATGTGTAAGCC
259 GAAAC--GAATGTAAGGCACTCAGTCAACCAGAGAGGTCGATAGGAGAGGCATAATACGCAAGCC
*
34947838 AGGGATCAGCCC-GATCCCCCTCTACATGCTATCAATCCCGTTAC
322 AGGGATCAGCCCAG-TCCCCCTCTACATGCTATCAATCCCGCTAC
* * *
34947882 CGGTCCTGCTACCACAACGCTCGGTCTGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTA
1 CGATCCTGCTACCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTA
* * * * * *
34947947 AGCCAACCCATGAAAGGAGCATCCGGGCACTCAGCCA-GCCGGAGAGGCAGAATGTGCAAGCCGG
66 AGCCAACCCACGAAACGAGCGTACGGGCACTCAG-CAGGTCGGAGAGGCAGAATGCGCAAGCCGG
* * * *
34948011 GGATCGACTCGGTCCCCCTTACGTGTTGTCGATCCTGCTACCGTAACCCTCGGTCTGGTCTGATC
130 GGATCGACCCGGTCCCCC-TATGTGCTGTCGATCCTGCTACCGCAACCCTCGGTCTGGTC-GATC
* *
34948076 TTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCA
193 TTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCA
*
34948141 CGAAACGA
258 TGAAACGA
34948149 GCATGCAGGG
Statistics
Matches: 526, Mismatches: 95, Indels: 25
0.81 0.15 0.04
Matches are distributed among these distances:
362 1 0.00
363 145 0.28
364 4 0.01
365 1 0.00
366 2 0.00
367 6 0.01
368 361 0.69
369 1 0.00
370 5 0.01
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.22
Consensus pattern (365 bp):
CGATCCTGCTACCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTA
AGCCAACCCACGAAACGAGCGTACGGGCACTCAGCAGGTCGGAGAGGCAGAATGCGCAAGCCGGG
GATCGACCCGGTCCCCCTATGTGCTGTCGATCCTGCTACCGCAACCCTCGGTCTGGTCGATCTTA
GACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGA
AACGAATGTAAGGCACTCAGTCAACCAGAGAGGTCGATAGGAGAGGCATAATACGCAAGCCAGGG
ATCAGCCCAGTCCCCCTCTACATGCTATCAATCCCGCTAC
Found at i:34948111 original size:26 final size:26
Alignment explanation
Indices: 34948075--34948127 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
34948065 CTGGTCTGAT
* *
34948075 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
34948101 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
34948127 C
1 C
34948128 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:34948727 original size:11 final size:11
Alignment explanation
Indices: 34948708--34948750 Score: 77
Period size: 11 Copynumber: 3.9 Consensus size: 11
34948698 GGTTAGGCTT
*
34948708 TTCGGCGATGC
1 TTCGACGATGC
34948719 TTCGACGATGC
1 TTCGACGATGC
34948730 TTCGACGATGC
1 TTCGACGATGC
34948741 TTCGACGATG
1 TTCGACGATG
34948751 ATGCCCCTGG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
11 31 1.00
ACGTcount: A:0.16, C:0.26, G:0.30, T:0.28
Consensus pattern (11 bp):
TTCGACGATGC
Found at i:34950418 original size:26 final size:26
Alignment explanation
Indices: 34950382--34950434 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34950372 CCGGTCTGAT
34950382 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
34950408 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
34950434 C
1 C
34950435 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:34950780 original size:26 final size:26
Alignment explanation
Indices: 34950751--34950803 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
34950741 CCGGTCTGAT
34950751 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
34950777 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
34950803 C
1 C
34950804 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:34951123 original size:26 final size:26
Alignment explanation
Indices: 34951094--34951146 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
34951084 CCGATCTGAT
*
34951094 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
34951120 CTTAGGCTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
34951146 C
1 C
34951147 CTAACTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.23, C:0.19, G:0.30, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34958106 original size:26 final size:26
Alignment explanation
Indices: 34958077--34958129 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34958067 CCTGTTCAAT
*
34958077 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
34958103 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
34958129 C
1 C
34958130 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34960115 original size:159 final size:157
Alignment explanation
Indices: 34959713--34960173 Score: 376
Period size: 159 Copynumber: 2.9 Consensus size: 157
34959703 AACTTTGTAT
* * * *
34959713 GCTTAGAAATGGAATGAACTCTGTATCCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * **
34959778 CTGGCCATAAAGGTAGAATACGCAAACCGAGGATCGACCCAGTCCCCCCTGCGTGCTGTCGATCC
66 CCGG-CAGAAAGGTAGAATGCACAAACCGAGGATCGACCCAGTCCCCCCTGCGTGCTACCGATCC
* *
34959843 TACTGCCGCAACCCTCGATCTGGACCGA
130 TACTGCCACAACCCTCGATCCGGACCGA
* * * * * * * *
34959871 TCTTA-CCCTGGGAATGAACTTCGTATGCATAAGTCAACCCACGAAACGAGCGTACGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * *
34959935 GCCAGCCGAAGGGGCATAATGCACAAGCC-AGGGATC-AGCCC-GATCCCCCTCTGCGTGCTACC
65 GCCGGCAGAA-AGGTAGAATGCACAAACCGA-GGATCGA-CCCAG-TCCCCC-CTGCGTGCTACC
* * * *
34959997 GAT-CTCGCTGCCACAACCCTCGGTCCGG-CTGGG
125 GATCCT-ACTGCCACAACCCTCGATCCGGAC-CGA
* * * *
34960030 GCTTAGACATGGAATGAACTCCCTAGGCATAAGCCAACCCACGAAACGGGCATGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
** * * * * ** **
34960095 CCGGTCAGAAAGGTAGAATGCGTAAACCGGGGATTGACCCAATCCCTCCTATGTGCTGTCGATCC
66 CCGG-CAGAAAGGTAGAATGCACAAACCGAGGATCGACCCAGTCCCCCCTGCGTGCTACCGATCC
* *
34960160 TGCTGCCGCAACCC
130 TACTGCCACAACCC
34960174 CCAGTCCGGT
Statistics
Matches: 230, Mismatches: 59, Indels: 28
0.73 0.19 0.09
Matches are distributed among these distances:
157 7 0.03
158 105 0.46
159 111 0.48
160 7 0.03
ACGTcount: A:0.25, C:0.32, G:0.26, T:0.17
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGGCAGAAAGGTAGAATGCACAAACCGAGGATCGACCCAGTCCCCCCTGCGTGCTACCGATCCT
ACTGCCACAACCCTCGATCCGGACCGA
Found at i:34960356 original size:12 final size:12
Alignment explanation
Indices: 34960339--34960366 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
34960329 CCCTATATGT
34960339 TGCCGATCCCGC
1 TGCCGATCCCGC
34960351 TGCCGATCCCGC
1 TGCCGATCCCGC
34960363 TGCC
1 TGCC
34960367 ACAACCCTCG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.07, C:0.50, G:0.25, T:0.18
Consensus pattern (12 bp):
TGCCGATCCCGC
Found at i:34961235 original size:26 final size:26
Alignment explanation
Indices: 34961199--34961249 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
34961189 TCAGTTTGAT
* *
34961199 CTTAGATTGGGAAAGAACTCTGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
* *
34961225 CTTAGACTGGGGATGAACTCCGTAT
1 CTTAGACTGGGAAAGAACTCCGTAT
34961250 TCCTAAGTCA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCGTATG
Found at i:34961604 original size:527 final size:526
Alignment explanation
Indices: 34960473--34961815 Score: 1701
Period size: 526 Copynumber: 2.5 Consensus size: 526
34960463 TCTCCTTCCA
** * *
34960473 CGTGCTGTCAATCCCGCTATCACAACCCTTGGTCC-AGCTGGGGCTTAGACATGGAATGAACTCC
1 CGTGCTGTCGGTCCCGCTACCACAACCCTCGGTCCGA-CTGGGGCTTAGACATGGAATGAACTCC
* *
34960537 CTATGCCTAAGCCAACCCACGAAACGGGCGTACGGGCACTCAG-TCGGTCGAAGAGGCAGAATGC
65 CTATGCCTAAGCCAACCCATGAAACGGGTGTACGGGCACTCAGCT-GGTCGAAGAGGCAGAATGC
* * *
34960601 GTAAGTCGGGGATTGACCCGGTCCCCCTGCGTGCTGTCGATCCTACTGTCACAAGCCTCGG-TCT
129 GTAAGTCGGGGATCGACCCGGTCCCCCTGCGTGCTGTCGATCCTACTGTCGCAACCCTCGGTTC-
* * * * * * *
34960665 GATTCGATCTTAGACTGGGAATGAACTCCGTATGATTGGACTGGGGATAAACTTCGTATGCCTAA
193 GATTTGATCTTAGATTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAA
* * * * *
34960730 GTTAACCCATGAAACGAGTGTACAGGCACTCAACCGACCGGAGAAGCCGGCCGAAGAGGCATAAT
258 GTCAACCCACGAAACGAGTGTACAGGCACTCAACCGACCAGAGAAGCCGACCGAAGAGGAATAAT
* * * * *
34960795 GCGCAAGCCGGGGATCAGCTCGGTCCCCCTCTACGTGCTGCCGATCCCACTGCTGATCCTGCTAC
323 ACGCAAGCCGGGGATCAACCCAGTCCCCCTCTACGTGCTGCAGATCCCACTGCTGATCCTGCTAC
* *
34960860 CACAACGCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACA
388 CACAACCCTCAGTCCAGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACA
* * *** * * *
34960925 AAACAAGCGTTCGGGTGCTCAACCTACCGGAGAGGCAGAATGCACAAGCTGGGGATTAGCTCGGT
453 AAACAAGCGTACCGACACTCAACCGACCGAAGAGGCAGAATGCACAAGCTGGGGATCAGCTCGGT
34960990 CCCCCTCTG
518 CCCCCTCTG
*
34960999 TGTGCTGTCGGTCCCGCTACCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCC
1 CGTGCTGTCGGTCCCGCTACCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCC
* * * *
34961064 TATGCCTAAGCCAACCCATGAAAAGGGTGTACGGGCACTCAGCTGGTCGGAGAGGCAAAATCCGT
66 TATGCCTAAGCCAACCCATGAAACGGGTGTACGGGCACTCAGCTGGTCGAAGAGGCAGAATGCGT
* * * * * * *
34961129 AAGTCGAGGAACGACCCAGTCCCCTTGCATGCTGCCGATCCTACTGTCGTAACCCTCGGTTC-AG
131 AAGTCGGGGATCGACCCGGTCCCCCTGCGTGCTGTCGATCCTACTGTCGCAACCCTCGGTTCGA-
* *
34961193 TTTGATCTTAGATTGGGAAAGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATTCCTAAGT
195 TTTGATCTTAGATTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGT
** * * * * * *
34961258 CAACCCACGAAACGAGTGTATTGGCGCTCAGCCGATCAGAGAGGCCGACCGGAGAGGAATAATAT
260 CAACCCACGAAACGAGTGTACAGGCACTCAACCGACCAGAGAAGCCGACCGAAGAGGAATAATAC
* * ** * *
34961323 GCAAGCCGGGGATCAACCCAGTCCCCCTGTACGTGCTGTAGAT-CCTGTTCGTCGGTCCTGCTAC
325 GCAAGCCGGGGATCAACCCAGTCCCCCTCTACGTGCTGCAGATCCCACTGC-T-GATCCTGCTAC
* **
34961387 CACAACCCTCAGTCCTGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATG
388 CACAACCCTCAGTCCAGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACA
* * ** * ** *
34961452 AAACGAGCGTACCGACACTGAGTCGACCGAAGAGGCATAATGCGTAAGTTGGGGATCAGC-CTGG
453 AAACAAGCGTACCGACACTCAACCGACCGAAGAGGCAGAATGCACAAGCTGGGGATCAGCTC-GG
34961516 TCCCCCTCTG
517 TCCCCCTCTG
34961526 CGTGCTGTCGGTCCCGCTACCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCC
1 CGTGCTGTCGGTCCCGCTACCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCC
* * * ** * *
34961591 TATGCCTAAGCCAACCCATGAAACGGGTGTGCGGGCGCTCAGCCGACCGAAGAGGTAGAATGCGC
66 TATGCCTAAGCCAACCCATGAAACGGGTGTACGGGCACTCAGCTGGTCGAAGAGGCAGAATGCGT
* * ** * * * *
34961656 AAGCCGGGGATCGGCTTGGTTCCCCCTGCGTGCTGTCGATCCTGCTATCGCAACCCTCGATGCGA
131 AAGTCGGGGATCGACCCGG-TCCCCCTGCGTGCTGTCGATCCTACTGTCGCAACCCTCGGTTCGA
* *
34961721 TTTGATCTTAGATTAGGAATGAACTCTGTATGCTTAGATTGGGGATGAACTCCGTATGCCTAAGT
195 TTTGATCTTAGATTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGT
* * *
34961786 CAACCCACAAAATGAGCGTAC-GGCCACTCA
260 CAACCCACGAAACGAGTGTACAGG-CACTCA
34961816 GTCGGCCGGA
Statistics
Matches: 696, Mismatches: 111, Indels: 18
0.84 0.13 0.02
Matches are distributed among these distances:
525 5 0.01
526 310 0.45
527 262 0.38
528 118 0.17
529 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.21
Consensus pattern (526 bp):
CGTGCTGTCGGTCCCGCTACCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCC
TATGCCTAAGCCAACCCATGAAACGGGTGTACGGGCACTCAGCTGGTCGAAGAGGCAGAATGCGT
AAGTCGGGGATCGACCCGGTCCCCCTGCGTGCTGTCGATCCTACTGTCGCAACCCTCGGTTCGAT
TTGATCTTAGATTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTC
AACCCACGAAACGAGTGTACAGGCACTCAACCGACCAGAGAAGCCGACCGAAGAGGAATAATACG
CAAGCCGGGGATCAACCCAGTCCCCCTCTACGTGCTGCAGATCCCACTGCTGATCCTGCTACCAC
AACCCTCAGTCCAGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAA
CAAGCGTACCGACACTCAACCGACCGAAGAGGCAGAATGCACAAGCTGGGGATCAGCTCGGTCCC
CCTCTG
Found at i:34961665 original size:159 final size:158
Alignment explanation
Indices: 34961373--34961714 Score: 461
Period size: 159 Copynumber: 2.2 Consensus size: 158
34961363 GATCCTGTTC
* *
34961373 GTCGGTCCTGCTACCACAACCCTCAGTCCTGCTGGGGCTTAGACATGGAATGAACTCCGTATGCC
1 GTCGGTCCTGCTACCACAACCCTCGGTCCTGCTGGGGCTTAGACATGGAATGAACTCCCTATGCC
* * * * **
34961438 TAAGCCAACCCATGAAACGAGCGTACCGACACTGAGTCGACCGAAGAGGCATAATGCGTAAGTTG
66 TAAGCCAACCCATGAAACGAGCGTACCGACACTCAGCCGACCGAAGAGGCAGAATGCGCAAGCCG
34961503 GGGATCAGCCTGGTCCCCCTCTGCGTGCT
131 GGGATCAGCCTGGTCCCCC-CTGCGTGCT
*
34961532 GTCGGTCCCGCTACCACAACCCTCGGTCC-GACTGGGGCTTAGACATGGAATGAACTCCCTATGC
1 GTCGGTCCTGCTACCACAACCCTCGGTCCTG-CTGGGGCTTAGACATGGAATGAACTCCCTATGC
* * * * * * *
34961596 CTAAGCCAACCCATGAAACGGGTGTGCGGGCGCTCAGCCGACCGAAGAGGTAGAATGCGCAAGCC
65 CTAAGCCAACCCATGAAACGAGCGTACCGACACTCAGCCGACCGAAGAGGCAGAATGCGCAAGCC
* * *
34961661 GGGGATCGGCTTGGTTCCCCCTGCGTGCT
130 GGGGATCAGCCTGGTCCCCCCTGCGTGCT
* * *
34961690 GTCGATCCTGCTATCGCAACCCTCG
1 GTCGGTCCTGCTACCACAACCCTCG
34961715 ATGCGATTTG
Statistics
Matches: 159, Mismatches: 23, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
158 31 0.19
159 128 0.81
ACGTcount: A:0.21, C:0.32, G:0.28, T:0.19
Consensus pattern (158 bp):
GTCGGTCCTGCTACCACAACCCTCGGTCCTGCTGGGGCTTAGACATGGAATGAACTCCCTATGCC
TAAGCCAACCCATGAAACGAGCGTACCGACACTCAGCCGACCGAAGAGGCAGAATGCGCAAGCCG
GGGATCAGCCTGGTCCCCCCTGCGTGCT
Found at i:34961768 original size:26 final size:26
Alignment explanation
Indices: 34961727--34961779 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
34961717 GCGATTTGAT
*
34961727 CTTAGATTAGGAATGAACTCTGTATG
1 CTTAGATTAGGAATGAACTCCGTATG
* *
34961753 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGATTAGGAATGAACTCCGTATG
34961779 C
1 C
34961780 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGATTAGGAATGAACTCCGTATG
Found at i:34961852 original size:343 final size:346
Alignment explanation
Indices: 34961422--34962140 Score: 882
Period size: 350 Copynumber: 2.1 Consensus size: 346
34961412 TAGACATGGA
* ** * *
34961422 ATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACCGACACTGAGTCGACCGAAGAGG
1 ATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTACCGACACTCAGTCGACCGAAGAAG
*** *
34961487 CATAATGCGTAAGTTGGGGATCAGCCTGGTCCCC-CT-C-TGC-GT-G-CTG-T-CGGTCCCGCT
66 CATAATGCGTAAGCCAGGGATCAGCCCGGTCCCCTCTGCATGCTGTCGACTGCTACGGTCCCGCT
* *
34961544 ACCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
131 ACCACAACCCTCGGTCCGACTAGGGCTTAGAAATGGAATGAACTCCCTATGCCTAAGCCAACCCA
* * * * * * * **
34961609 TGAAACGGGTGTGCGGGCGCTCAGCCGACCGAAGAGGTAGAATGCGCAAGCCGGGGATCGGCTTG
196 -CAAA--GGTATG-GGG-GATCAACCGACCGAAGAGGTAGAATGCACAAGCCAGGGATCGACCCG
* * * *
34961674 GTTCCCCCTGCGTGCTGTCGATCCTGCTATCGCAACCCTCGATGC-GATTTGATCTTAGATTAGG
256 GTCCCCCCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCGAT-CTGATCTGATCTTAGACTAGG
*
34961738 AATGAACTCTGTATGCTTAGATTGGGG
320 AATGAACTCCGTATGCTTAGATTGGGG
* * * *
34961765 ATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTACGGCCACTCAGTCGGCCGGAA-AA
1 ATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTACCGACACTCAGTCGACC-GAAGAA
34961829 GCATAATGCGTAAGCCAGGGATCAGCCCGGTCCCCTTCTGCATGCTGTCGATCCTGCTACCGGTC
65 GCATAATGCGTAAGCCAGGGATCAGCCCGGTCCCC-TCTGCATGCTGTCGA--CTGCTA-CGGTC
** * * * * **
34961894 TTGCTGCCACAACCCTCGGTCTGACTAGGGTTTAGAAATGGAATTAACTCTGTATGCCTAAGCCA
126 CCGCTACCACAACCCTCGGTCCGACTAGGGCTTAGAAATGGAATGAACTCCCTATGCCTAAGCCA
* * *
34961959 ACCCACAAATGTATGGGGGATCAACCGACCGAAGAGGTAGAATGCATAAGTCAGGGATCGACCCG
191 ACCCACAAAGGTATGGGGGATCAACCGACCGAAGAGGTAGAATGCACAAGCCAGGGATCGACCCG
* * *
34962024 GTCCCCCCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGA
256 GTCCCCCCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCGATCTGATCTGATCTTAGACTAGGA
34962089 ATGAACTCCGTATGCTTAGATTGGGG
321 ATGAACTCCGTATGCTTAGATTGGGG
34962115 ATGAACTCCGTATGCCTAAGTCAACC
1 ATGAACTCCGTATGCCTAAGTCAACC
34962141 AATGAAATGA
Statistics
Matches: 319, Mismatches: 43, Indels: 21
0.83 0.11 0.05
Matches are distributed among these distances:
343 82 0.26
344 3 0.01
345 2 0.01
346 1 0.00
347 3 0.01
348 2 0.01
349 2 0.01
350 145 0.45
351 3 0.01
352 7 0.02
353 1 0.00
354 3 0.01
355 65 0.20
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.22
Consensus pattern (346 bp):
ATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTACCGACACTCAGTCGACCGAAGAAG
CATAATGCGTAAGCCAGGGATCAGCCCGGTCCCCTCTGCATGCTGTCGACTGCTACGGTCCCGCT
ACCACAACCCTCGGTCCGACTAGGGCTTAGAAATGGAATGAACTCCCTATGCCTAAGCCAACCCA
CAAAGGTATGGGGGATCAACCGACCGAAGAGGTAGAATGCACAAGCCAGGGATCGACCCGGTCCC
CCCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCGATCTGATCTGATCTTAGACTAGGAATGAA
CTCCGTATGCTTAGATTGGGG
Found at i:34962113 original size:26 final size:26
Alignment explanation
Indices: 34962077--34962129 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34962067 CTGGTCTGAT
34962077 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
34962103 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
34962129 C
1 C
34962130 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34963178 original size:159 final size:157
Alignment explanation
Indices: 34962823--34963326 Score: 442
Period size: 159 Copynumber: 3.2 Consensus size: 157
34962813 CACAACGTAT
* * * **
34962823 GCTTAGACATGAAATGAACTCCATATGCTTAAGCCAACCCACGAAACAAGCGTATGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * **
34962888 CCGATCAGAA-AGGTAGAATGCGCAAGCCGAGGATCGACCCAGTCCCCCCTACGTGCTGTCGATC
66 CCG-CCA-AAGAGGCAAAATACGCAAGCCGAGGATCGACCCGGTCCCCCCTGCGTGCTACCGATC
* * * *
34962952 CTGTTGCTACAACCCTCGGTCTGGTCTAA
129 ATGTTGCCACAACCCTCGGTCTCGACTAA
* * * * * *
34962981 TCTCAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGTGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * *
34963045 GCCAGCCAAAGAGGCAAAATACGCAAGACGGGGATCGACCCGGTCCCCCTCTGCGTGCTACCGGT
65 GCC-GCCAAAGAGGCAAAATACGCAAGCCGAGGATCGACCCGGTCCCCC-CTGCGTGCTACCGAT
**
34963110 CATGTTGCCACAACCCTCGGTC-CGACTGGG
128 CATGTTGCCACAACCCTCGGTCTCGACT-AA
* * * * *
34963140 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCATATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
** * ** * *
34963205 CCGGCCGTAGAGGCAGAATTTTGCAAGCCGAGGATCGACCCGGTCCCTCCTGCGTGCTGCCGATC
66 CC-GCCAAAGAGGCA-AAATACGCAAGCCGAGGATCGACCCGGTCCCCCCTGCGTGCTACCGATC
* * ** * * *
34963270 CTGCTGCCGTAACCTTTGGT-TCGATCTGA
129 ATGTTGCCACAACCCTCGGTCTCGA-CTAA
* *
34963299 TCTTAGAC-TGGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCATATGC
34963327 TTAGACTAGC
Statistics
Matches: 278, Mismatches: 58, Indels: 19
0.78 0.16 0.05
Matches are distributed among these distances:
157 3 0.01
158 92 0.33
159 153 0.55
160 30 0.11
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCATATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGCCAAAGAGGCAAAATACGCAAGCCGAGGATCGACCCGGTCCCCCCTGCGTGCTACCGATCAT
GTTGCCACAACCCTCGGTCTCGACTAA
Found at i:34963641 original size:171 final size:172
Alignment explanation
Indices: 34963338--34963769 Score: 462
Period size: 171 Copynumber: 2.5 Consensus size: 172
34963328 TAGACTAGCG
* *
34963338 ATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCGCTCAGCCGGTTGGAGAGG
1 ATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCGCTCAGCCGATCGGAGAGG
* * * * **
34963403 CATAATGCGTAAGCCGAGGATC-AGCCTGATCCCCCTCTGCATGCTGCCGATCACACTACCAGTC
66 CATAATGCGAAAGCTGAGGATCGACCCAGATCCCCCTCTGCATGCTGCAAATCACACTACCAGTC
* * * * *
34963467 CTGCTGCCACAACGCTCAATTCGGT-TGGGGCGTAGACAT-GGA
131 CTGCTACAACAACCCTCAATTCGATCT-GAGCGTAGA-ATAGGA
* * * * *
34963509 ATGAACTCCATATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGTTCAGCCGATCGGAGAGG
1 ATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCGCTCAGCCGATCGGAGAGG
* * * * * * **
34963574 CAGAATACGCAAGCTGAGGATCGACCCAG-TCCCACC-CTGGATGCTGTAAATC-CTACTGCTTG
66 CATAATGCGAAAGCTGAGGATCGACCCAGATCCC-CCTCTGCATGCTGCAAATCAC-ACTACCAG
* * * *
34963636 TCCTGCTACAACAACCCTCGATTCGATCTGATCTTAGAGTAGGA
129 TCCTGCTACAACAACCCTCAATTCGATCTGAGCGTAGAATAGGA
* * * *
34963680 ATGAACTCCGTATGCCTAAGTCAACCCATAAAACGAGCGTACGGGCGCTGAGCCAACCGGAGAGG
1 ATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCGCTCAGCCGATCGGAGAGG
* *
34963745 CATAATGCGAAAGTTGGGGATCGAC
66 CATAATGCGAAAGCTGAGGATCGAC
34963770 TTGGTCCGCC
Statistics
Matches: 213, Mismatches: 43, Indels: 10
0.80 0.16 0.04
Matches are distributed among these distances:
170 2 0.01
171 204 0.96
172 7 0.03
ACGTcount: A:0.27, C:0.28, G:0.26, T:0.19
Consensus pattern (172 bp):
ATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCGCTCAGCCGATCGGAGAGG
CATAATGCGAAAGCTGAGGATCGACCCAGATCCCCCTCTGCATGCTGCAAATCACACTACCAGTC
CTGCTACAACAACCCTCAATTCGATCTGAGCGTAGAATAGGA
Found at i:34964021 original size:26 final size:26
Alignment explanation
Indices: 34963985--34964037 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34963975 CCGATTCGAT
34963985 CTTAGACTGGGAATGAACTACGTATG
1 CTTAGACTGGGAATGAACTACGTATG
* *
34964011 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTACGTATG
34964037 C
1 C
34964038 CTAAGTCCAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:34964380 original size:685 final size:669
Alignment explanation
Indices: 34962823--34964744 Score: 2032
Period size: 685 Copynumber: 2.8 Consensus size: 669
34962813 CACAACGTAT
* * * **
34962823 GCTTAGACATGAAATGAACTCCATATGCTTAAGCCAACCCACGAAACAAGCGTATGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* *
34962888 CCGATC-AGAAAGGTAGAATGCGCAAGCCGAGGATCGACCCAGTCCCCCCTACGTGCTGTCGATC
66 CCGATCGA-AAAGGCAGAATGCGCAAG-CGAGGATCGACCCAGTCCCCCCTACATGCTGTCGATC
* * * * * *
34962952 CTGTTGCTACAACCCTCGGTCTGGTCTAATCTCAGACTGGGAATGAACTCCGTATGCATAAGTCA
129 CTGCTACAACAACCCTCGGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * ** * * *
34963017 ACCCACGAAACGAGTGTGCGGGCGCTGAGCCAGCCAAAGAGGCAAAATACGCAAGACGGGGATCG
194 ACCCATGAAACGAGCGTGCGGGCGCTGAGCCAGCCGGAGAGGCATAATGCGAAAGACGGGGATCG
* * * *
34963082 ACCCGGTCCCCCTCTGCGTGCTACCGGTCATGTTGCCACAACCCTCGGTCCGACTGGGGCTTAGA
259 ACTCGGT-CCCCTCTGCGTGCTGCC-GTCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGA
*
34963147 CATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGTGCTCAACCGGCC-
322 CATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGTGCTCAGCCGGCCA
** * * *
34963211 GTAGAGGCAGAATTTTGCAAGCCGAGGATCGACCCGGTCCCTCCTGCGTGCTGCCGATCCTGCTG
387 G-AGAGGCAGAA-TACGCAAGCCGAGGATCGACCCGGTTCCTCCTGCATGCTGCCGATCCTACTG
* * * * *
34963276 CCGTAACCTTTGGTTCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGCGATG
450 CCGCAACCTTTGATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATG
* * * * *
34963341 AACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCGCTCAGCCGGTTGGAGAGGCAT
515 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATACGGGCACTCAGCCGGTCGGAAAGGCAT
* * *
34963406 AATGCGTAAGCCGAGGATCAGCCTGATCCCCCTCTGCATGCTGCCGATCACACTACCAGTCCTGC
580 AATGCGCAAGCCGAGGATCAGCCCGATCCCCCTCTGCATGCTGCCGATCACACTACCAGTCCTAC
* * * **
34963471 TGCCACAACGCTCAATTCGGTTGGG
645 TACCACAACCCTCAATCCGACTGGG
* * * *
34963496 GCGTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGTTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * **
34963561 CCGATCGGAGAGGCAGAATACGCAAGCTGAGGATCGACCCAGTCCCACCCTGGATGCTGTAAATC
66 CCGATCGAAAAGGCAGAATGCGCAAGC-GAGGATCGACCCAGTCCC-CCCTACATGCTG------
* * * * * * *
34963626 CTACTGCTTGTCCTGCTACAACAACCCTCGATTCGATCTGATCTTAGAGTAGGAATGAACTCCGT
123 -T-C-G---ATCCTGCTACAACAACCCTCGGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGT
* * *
34963691 ATGCCTAAGTCAACCCATAAAACGAGCGTACGGGCGCTGAGCCAACCGGAGAGGCATAATGCGAA
182 ATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTGAGCCAGCCGGAGAGGCATAATGCGAA
** * * * * *
34963756 AGTTGGGGATCGACTTGGTCCGCCTCTGTGTGCTGCCAGTCCTGCTACCGCAACCCTCGGTTCGA
247 AGACGGGGATCGACTCGGTCC-CCTCTGCGTGCTGCC-GTCCTGCTGCCACAACCCTCGGTCCGA
* *
34963821 CTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGTGTGCGGGTG
310 CTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGTG
* * * * **
34963886 CTTAGCCGACCAGAGAGGTAGAATACGCAAGTCGAGGATCGACCCGGTTCCTCCTGCATGCTATC
375 CTCAGCCGGCCAGAGAGGCAGAATACGCAAGCCGAGGATCGACCCGGTTCCTCCTGCATGCTGCC
* *
34963951 GATCCTACTGTCGCAACCTTTGATCCGAT-TCGATCTTAGACTGGGAATGAACTACGTATGCTTA
440 GATCCTACTGCCGCAACCTTTGATCCGATCT-GATCTTAGACTGGGAATGAACTCCGTATGCTTA
* * *
34964015 GACTGGGGATGAACTCCGTATGCCTAAGTCCACCCACGAAACGAGCATACGGGTACTAAGCCGAC
504 GACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATACGGGCACT---CAG-C
* * * * *
34964080 CGAAAGGGTCGACCGGAAAGGCTTAATGTGCAAGTCG-GAGATCAGCCCGATCCCTCTCTGCGTG
565 C-----GGT----CGGAAAGGCATAATGCGCAAGCCGAG-GATCAGCCCGATCCCCCTCTGCATG
* * * * ** **
34964144 CTGTCGATCTCGCTTCTGGTCCTACTACCACAACCCTCGGTCCGACTGGG
620 CTGCCGATCACACTACCAGTCCTACTACCACAACCCTCAATCCGACTGGG
** * * * *
34964194 GCTTAGACATGGAATGAACTCTGTGTGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTCAA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
** * * * * * *
34964259 CCGGCCGAAAAGGCAAAATGTGCAAGTCGGGGATCGGCTCAGTTCCCCCTACATGCTGTCGATCC
66 CCGATCGAAAAGGCAGAATGCGCAAG-CGAGGATCGACCCAGTCCCCCCTACATGCTGTCGATCC
* * * *
34964324 TGCTACCACAACCCTCGGTCCGGTCCAATCTTAAACTGGGAATGAACTCCGTATGCCTAAGTTAA
130 TGCTACAACAACCCTCGGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * *
34964389 CCC-TCGAAATGAGCGTGTGGGTGCTGAGCCAGCCGGAGAGGCATAATGC-ATAAGCCGGGGATC
195 CCCAT-GAAACGAGCGTGCGGGCGCTGAGCCAGCCGGAGAGGCATAATGCGA-AAGACGGGGATC
* * * * * *
34964452 -AGTCCGATCCCTCTCTACGTGCTGCCGATCCCGCTGCCACAACCCTCGATCCGACAGGGGCTTA
258 GACT-CGGTCCC-CTCTGCGTGCTGCCG-TCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTA
* *
34964516 GACATGGAATGAACTCCCTATGCCTAAGCCAACTCACGAAACGGGCGTGCGGGTGCTCAGTCGGC
320 GACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGTGCTCAGCCGGC
* * * * * *
34964581 CAGAGAGGCAGAATGCGTAAGCCAAGGATCGA-TC-GATCCCCCTAGCATGCTGCCGATCCTACT
385 CAGAGAGGCAGAATACGCAAGCCGAGGATCGACCCGGTTCCTCCT-GCATGCTGCCGATCCTACT
* * * * * * *
34964644 GGCACAACC-CTCAGTCCGGTCTGATGC-TAGACTTGGAATGACCTCCGTATGCTTAGACTGGGG
449 GCCGCAACCTTTGA-TCCGATCTGAT-CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGG
* *
34964707 ATGAACTCCGTAT-CCGTAAGTTAACCAACGAAACGAGC
512 ATGAACTCCGTATGCC-TAAGTCAACCCACGAAACGAGC
34964745 GTGTGGGCGC
Statistics
Matches: 1025, Mismatches: 181, Indels: 75
0.80 0.14 0.06
Matches are distributed among these distances:
672 1 0.00
673 95 0.09
674 9 0.01
681 1 0.00
682 1 0.00
683 12 0.01
684 105 0.10
685 386 0.38
686 228 0.22
687 1 0.00
688 3 0.00
689 3 0.00
690 1 0.00
694 3 0.00
697 11 0.01
698 164 0.16
699 1 0.00
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (669 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGATCGAAAAGGCAGAATGCGCAAGCGAGGATCGACCCAGTCCCCCCTACATGCTGTCGATCCT
GCTACAACAACCCTCGGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
CCATGAAACGAGCGTGCGGGCGCTGAGCCAGCCGGAGAGGCATAATGCGAAAGACGGGGATCGAC
TCGGTCCCCTCTGCGTGCTGCCGTCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATG
GAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGTGCTCAGCCGGCCAGAGA
GGCAGAATACGCAAGCCGAGGATCGACCCGGTTCCTCCTGCATGCTGCCGATCCTACTGCCGCAA
CCTTTGATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCC
GTATGCCTAAGTCAACCCACGAAACGAGCATACGGGCACTCAGCCGGTCGGAAAGGCATAATGCG
CAAGCCGAGGATCAGCCCGATCCCCCTCTGCATGCTGCCGATCACACTACCAGTCCTACTACCAC
AACCCTCAATCCGACTGGG
Found at i:34964530 original size:159 final size:157
Alignment explanation
Indices: 34964171--34964661 Score: 479
Period size: 159 Copynumber: 3.1 Consensus size: 157
34964161 GGTCCTACTA
* * *
34964171 CCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCTGTGTGCCTAAGCCAACCCAC
1 CCACAACCCTCGGTCCGACAGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAC
* ** * * * * * * * *
34964236 AAAACGAGCGTGCGGGCACTCAACCGGCCGAAAAGGCAAAATGTGCAAGTCGGGGATCGGCTCAG
66 GAAACGAGCGTGCGGGTGCTCAGCCGGCCGGAGAGGCAAAATGCGTAAGCCGGGGATC-GATCCG
* * *
34964301 TTCCCCCTACATGCTGTCGATCCTGCTA
130 ATCCCCCTACATGCTGCCGATCCTGCTG
* ** * **
34964329 CCACAACCCTCGGTCCGGTCCA--ATCTTAAAC-TGGGAATGAACTCCGTATGCCTAAGTTAACC
1 CCACAACCCTCGGTCC-G-ACAGGGGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACC
* * * * * * *
34964391 CTCGAAATGAGCGTGTGGGTGCTGAGCCAGCCGGAGAGGCATAATGCATAAGCCGGGGATC-AGT
63 CACGAAACGAGCGTGCGGGTGCTCAGCCGGCCGGAGAGGCAAAATGCGTAAGCCGGGGATCGA-T
* *
34964455 CCGATCCCTCTCTACGTGCTGCCGATCCCGCTG
127 CCGATCCC-C-CTACATGCTGCCGATCCTGCTG
* * *
34964488 CCACAACCCTCGATCCGACAGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACTCAC
1 CCACAACCCTCGGTCCGACAGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAC
* * * * **
34964553 GAAACGGGCGTGCGGGTGCTCAGTCGGCCAGAGAGGCAGAATGCGTAAGCCAAGGATCGAT-CGA
66 GAAACGAGCGTGCGGGTGCTCAGCCGGCCGGAGAGGCAAAATGCGTAAGCCGGGGATCGATCCGA
*
34964617 TCCCCCTAGCATGCTGCCGATCCTACTG
131 TCCCCCTA-CATGCTGCCGATCCTGCTG
* *
34964645 GCACAACCCTCAGTCCG
1 CCACAACCCTCGGTCCG
34964662 GTCTGATGCT
Statistics
Matches: 263, Mismatches: 59, Indels: 23
0.76 0.17 0.07
Matches are distributed among these distances:
156 3 0.01
157 41 0.16
158 101 0.38
159 115 0.44
160 3 0.01
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.18
Consensus pattern (157 bp):
CCACAACCCTCGGTCCGACAGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAC
GAAACGAGCGTGCGGGTGCTCAGCCGGCCGGAGAGGCAAAATGCGTAAGCCGGGGATCGATCCGA
TCCCCCTACATGCTGCCGATCCTGCTG
Found at i:34964701 original size:26 final size:25
Alignment explanation
Indices: 34964667--34964719 Score: 70
Period size: 26 Copynumber: 2.1 Consensus size: 25
34964657 GTCCGGTCTG
* *
34964667 ATGCTAGACTTGGAATGACCTCCGT
1 ATGCTAGACTGGGAATGAACTCCGT
*
34964692 ATGCTTAGACTGGGGATGAACTCCGT
1 ATGC-TAGACTGGGAATGAACTCCGT
34964718 AT
1 AT
34964720 CCGTAAGTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
25 4 0.17
26 20 0.83
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (25 bp):
ATGCTAGACTGGGAATGAACTCCGT
Found at i:34965328 original size:26 final size:26
Alignment explanation
Indices: 34965292--34965344 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
34965282 TTCAGCCGAT
34965292 CTTAGACTGGGAATGAACTCCGGATG
1 CTTAGACTGGGAATGAACTCCGGATG
* * *
34965318 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGGATG
34965344 C
1 C
34965345 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGGATG
Found at i:34966201 original size:26 final size:26
Alignment explanation
Indices: 34966165--34966217 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34966155 CCAGTCTGAT
34966165 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
34966191 CTTAGACTGGGGATGAATTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
34966217 C
1 C
34966218 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34966938 original size:26 final size:27
Alignment explanation
Indices: 34966886--34966939 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
34966876 GGCTCAAAAT
* * *
34966886 CTTAGACTTGGGAATGAACTTCGTATG
1 CTTAGACATGGGAATGAACTCCATATG
34966913 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGACATGGGAATGAACTCCATATG
34966939 C
1 C
34966940 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 16 0.67
27 8 0.33
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.30
Consensus pattern (27 bp):
CTTAGACATGGGAATGAACTCCATATG
Found at i:34967428 original size:26 final size:26
Alignment explanation
Indices: 34967387--34967439 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
34967377 CCAGTTCGAT
34967387 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
34967413 CTTAGACT-GGAGATGAACTCCGTATG
1 CTTAGACTGGGA-ATGAACTCCGTATG
34967439 C
1 C
34967440 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 3 0.12
26 23 0.88
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34967943 original size:26 final size:26
Alignment explanation
Indices: 34967907--34967959 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34967897 TCAGTCTGAT
34967907 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
34967933 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
34967959 C
1 C
34967960 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34968457 original size:26 final size:26
Alignment explanation
Indices: 34968407--34968459 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
34968397 CCGGTCTGAT
**
34968407 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
34968433 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
34968459 C
1 C
34968460 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34968898 original size:355 final size:353
Alignment explanation
Indices: 34968244--34968921 Score: 804
Period size: 355 Copynumber: 1.9 Consensus size: 353
34968234 CTCGGTCCGA
* * * *
34968244 CTGGGGCTTAGACATGGAATAAACTCCTTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGACG
1 CTGGGGCTTAGACATGGAATAAACTCCGTAAGCCTAAGCCAACCCACGAAACGAGCGTGCGGACA
* * * * ** *
34968309 CTCAACCGATCAGAGAGACAAAATGCACAAGCTGGGGATCGGCCCGATCCCCACTCGTGCTGTCG
66 CTCAACCGATCAAAAAGACAAAATACACAAGCCGGGGATCAACCCGATCCCCACTCATGCTGTCG
* * * * ** * *
34968374 ATCCTGCTGCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTTTGTATGCTTAGA
131 ATCCTACTACCGCAACCCTCGATCCGATCCGATCTTAGACTGACAATGAACTCTATATGCTTAGA
* * ** * * * * *
34968439 CTGGGGATGAACTCCGTATGCCTAAGTCAACTGATGAAACGAGTGTGTGGGCGTTCAGCTGACCT
196 CTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGACCG
* ** * ** *
34968504 GAGAGGCATAATATGCAAGCTGGGGATTAGCCCGATCCCCCTCTGTGTGCTGTCGATCCCGCTGT
261 GAGAGGCAGAATATGCAAGCCAGGGATGAGCCCGATCCCCC-CTACGTGCTATCGATCCCGCTGT
34968569 CCATCCTACAGCTATGACCTTCGATTTGG
325 CCATCCTACAGCTATGACCTTCGATTTGG
* * *
34968598 CTGGGGCTTAGACATGGAATGAACTCCGTAAGCCTAAGCCAAGCCACGAAACGAGCGTGCGGGCA
1 CTGGGGCTTAGACATGGAATAAACTCCGTAAGCCTAAGCCAACCCACGAAACGAGCGTGCGGACA
* * ** * * * * *
34968663 CTCAGCCGGTCAAAAAGGTAGAATACACAAGCCGGGGATCAATCTGGTCCCCCCTGCATGCTGTC
66 CTCAACCGATCAAAAAGACAAAATACACAAGCCGGGGATCAACCCGATCCCCACT-CATGCTGTC
* *
34968728 GATCCTACTATCGCAACCCTCGATCCGATCCGATCTTAGACTGACAATGAACTCTATATGTTTAG
130 GATCCTACTACCGCAACCCTCGATCCGATCCGATCTTAGACTGACAATGAACTCTATATGCTTAG
* *
34968793 ACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAGCTGAC
195 AC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGAC
* * *
34968857 CGGAGAGGCAGAATGCT-CAAGCCAGGGATCGA-CCTGATCCCCCCTACGTGCTATCGATCCTGC
259 CGGAGAGGCAGAAT-ATGCAAGCCAGGGAT-GAGCCCGATCCCCCCTACGTGCTATCGATCCCGC
34968920 TG
322 TG
34968922 CTGTAACCCT
Statistics
Matches: 266, Mismatches: 54, Indels: 8
0.81 0.16 0.02
Matches are distributed among these distances:
354 116 0.44
355 147 0.55
356 3 0.01
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.21
Consensus pattern (353 bp):
CTGGGGCTTAGACATGGAATAAACTCCGTAAGCCTAAGCCAACCCACGAAACGAGCGTGCGGACA
CTCAACCGATCAAAAAGACAAAATACACAAGCCGGGGATCAACCCGATCCCCACTCATGCTGTCG
ATCCTACTACCGCAACCCTCGATCCGATCCGATCTTAGACTGACAATGAACTCTATATGCTTAGA
CTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGACCG
GAGAGGCAGAATATGCAAGCCAGGGATGAGCCCGATCCCCCCTACGTGCTATCGATCCCGCTGTC
CATCCTACAGCTATGACCTTCGATTTGG
Found at i:34968916 original size:184 final size:184
Alignment explanation
Indices: 34968605--34968965 Score: 445
Period size: 184 Copynumber: 2.0 Consensus size: 184
34968595 TGGCTGGGGC
*
34968605 TTAGACATGGAATGAACTCCGTAAGCCTAAGCCAAGCCACGAAACGAGCGTGCGGGCACTCAGCC
1 TTAGACATGGAATGAACTCCGTAAGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCC
** * * * * * *
34968670 GGTCAAAAAGGTAGAATACACAAGCCGGGGATCAATCTGGTCCCCCCTGCATGCTGTCGATCCTA
66 GACCAAAAAGGCAGAATACACAAGCCAGGGATCAACCTGATCCCCCCTACATGCTATCGATCCTA
* *
34968735 CT-ATCGCAACCCTCGATCCGATCCGATCTTAGACTGACAATGAACTCTATATGT
131 CTGCT-GCAACCCTCGATCCGATCCGATCATAGACTGACAATGAACTCTATATGT
* * ** *
34968789 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAGCT
1 TTAGACATGGAATGAACTCCGTAAGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCC
** * * * * * *
34968854 GACCGGAGAGGCAGAATGCTCAAGCCAGGGATCGACCTGATCCCCCCTACGTGCTATCGATCCTG
66 GACCAAAAAGGCAGAATACACAAGCCAGGGATCAACCTGATCCCCCCTACATGCTATCGATCCTA
* * * **
34968919 CTGCTGTAACCCTCGGTCCGATCCGATCATAGATTGGGAATGAACTC
131 CTGCTGCAACCCTCGATCCGATCCGATCATAGACTGACAATGAACTC
34968966 CGTATGCCTA
Statistics
Matches: 147, Mismatches: 29, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
184 146 0.99
185 1 0.01
ACGTcount: A:0.27, C:0.29, G:0.24, T:0.20
Consensus pattern (184 bp):
TTAGACATGGAATGAACTCCGTAAGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCC
GACCAAAAAGGCAGAATACACAAGCCAGGGATCAACCTGATCCCCCCTACATGCTATCGATCCTA
CTGCTGCAACCCTCGATCCGATCCGATCATAGACTGACAATGAACTCTATATGT
Found at i:34970022 original size:26 final size:26
Alignment explanation
Indices: 34969985--34970036 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
34969975 GCTCAAAATA
*
34969985 TTAGACTGGGAATGAACTTCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
34970011 TTAGACAT-GGAATGAACTCCGTATGC
1 TTAGAC-TGGGAATGAACTCCGTATGC
34970037 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:34970358 original size:159 final size:157
Alignment explanation
Indices: 34970009--34970410 Score: 393
Period size: 159 Copynumber: 2.5 Consensus size: 157
34969999 AACTTCGTAT
* *
34970009 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAACGTGCGGGCGTTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAACGTGCGGGCGCTCAA
* * *** **
34970074 CCGGCCGGAGAGGTAGAATGCGCAAGCCAGGGATCGGGCCGGTCCCCCTGCGTGCTTTCAATCCT
66 CCGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCAACCCGGTCCCCCTGCGTGCTACCAATCCT
*** *
34970139 GCTTGTGTAACCCTCAGTCCGATCTGA
131 GCTTGCACAACCCTCAGTCCGAGCTGA
* * * * *
34970166 TCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAA-TAAGCGTGCGGGTGCTG
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAA-CGTGCGGGCGCTC
* * * *
34970229 AACCGATC-GATGAGGCATAATGCGCAAGCCGGGGATTAACCCGGTTCCCCTCTGCGTGCTACCA
64 AACCGACCGGA-GAGGCAGAATGCGCAAGCCAGGGATCAACCCGG-TCCCC-CTGCGTGCTACCA
* * * *
34970293 GTCCTGC-TGCCACAACCCTCGGTCTG-GCTGGG
126 ATCCTGCTTG-CACAACCCTCAGTCCGAGCT-GA
* * * **
34970325 GCTTAGACATGGAATGAACTCCCTATGCCTAAGTCAACCCATGAAAC-AGGCATGTAGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGA-ACGTGCGGGCGCTCA
* *
34970389 GCCGATCGGAGAGGCAGAATGC
65 ACCGACCGGAGAGGCAGAATGC
34970411 ACAAAAGCCG
Statistics
Matches: 197, Mismatches: 37, Indels: 20
0.78 0.15 0.08
Matches are distributed among these distances:
156 5 0.03
157 83 0.42
158 9 0.05
159 97 0.49
160 3 0.02
ACGTcount: A:0.24, C:0.28, G:0.28, T:0.20
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAACGTGCGGGCGCTCAA
CCGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCAACCCGGTCCCCCTGCGTGCTACCAATCCT
GCTTGCACAACCCTCAGTCCGAGCTGA
Found at i:34971315 original size:26 final size:26
Alignment explanation
Indices: 34971286--34971338 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
34971276 CCGGTCTGAT
* *
34971286 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
34971312 CTTAGACTGGGGATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
34971338 C
1 C
34971339 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:34972540 original size:26 final size:26
Alignment explanation
Indices: 34972511--34972563 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34972501 CCTATCTGAT
*
34972511 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
34972537 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
34972563 C
1 C
34972564 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34972916 original size:26 final size:26
Alignment explanation
Indices: 34972878--34972930 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34972868 CCAATCCAAT
*
34972878 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
34972904 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
34972930 C
1 C
34972931 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:34974122 original size:26 final size:26
Alignment explanation
Indices: 34974084--34974136 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34974074 GGCTCAAAAT
*
34974084 CTTAGAATGGGAATGAACTCTGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
34974110 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGA-ATGGGAATGAACTCCGTATG
34974136 C
1 C
34974137 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Found at i:34974503 original size:159 final size:159
Alignment explanation
Indices: 34974109--34974539 Score: 415
Period size: 159 Copynumber: 2.7 Consensus size: 159
34974099 AACTCTGTAT
* * ** *
34974109 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCACTTAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTTAG
* * * * * * **
34974174 CAGGCCGGAGAGGCAGAATGCACAAGTCGGGGATCGGCCTAGTCCCCC-CTACGTGCTGTCGATC
66 CCGGTCGGAGAGGCAAAATGCGCAAGTCGAGAATCGGCCCGGTCCCCCTCTACGTGCTGTCGATC
***
34974238 TTTCTACCACAACCCTCAGTCTGGTCCGA
131 CCACTACCACAACCCTCAGTCTGGTCCGA
* * * * * * *
34974267 TCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACAAAATGAGTGTGCGGGTGCTAA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTTA
* * * * * * *
34974331 GCC-ATCCGTAGAGGCATAATGCGTAAGCCGAGAATCAGCCCGGTCCCCCTCTATGTGCTGTCGA
65 GCCGGT-CGGAGAGGCAAAATGCGCAAGTCGAGAATCGGCCCGGTCCCCCTCTACGTGCTGTCGA
* * * * * *
34974395 TCCCACTGCCATAACCCTCGGTTTGG-CTGGG
129 TCCCACTACCACAACCCTCAGTCTGGTC-CGA
* * *
34974426 GCTTAGACATGGAATGAACTTCC-TATGCCTAAGCCAACCCACGAAACGGGCGTACGGATGCTTA
1 GCTTAGACATGGAATGAAC-TCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTTA
*
34974490 GCCGGTCGGAGAGGCAAAATGCGCAAGTC-AGGAATCGGCCCGATCCCCCT
65 GCCGGTCGGAGAGGCAAAATGCGCAAGTCGA-GAATCGGCCCGGTCCCCCT
34974540 GCGTGCTACC
Statistics
Matches: 213, Mismatches: 52, Indels: 15
0.76 0.19 0.05
Matches are distributed among these distances:
157 1 0.00
158 87 0.41
159 120 0.56
160 5 0.02
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTTAG
CCGGTCGGAGAGGCAAAATGCGCAAGTCGAGAATCGGCCCGGTCCCCCTCTACGTGCTGTCGATC
CCACTACCACAACCCTCAGTCTGGTCCGA
Found at i:34974620 original size:26 final size:26
Alignment explanation
Indices: 34974584--34974636 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
34974574 CCGATCTGAT
*
34974584 CTTATACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
34974610 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
34974636 C
1 C
34974637 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:34975644 original size:26 final size:26
Alignment explanation
Indices: 34975603--34975655 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
34975593 CTGGTTCAAT
34975603 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
34975629 CTTAGACTGAGG-ATGAACTCCGTATG
1 CTTAGACTG-GGAATGAACTCCGTATG
34975655 C
1 C
34975656 CTAAGTCATC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34975837 original size:26 final size:26
Alignment explanation
Indices: 34975801--34975851 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
34975791 GGTTCAATCT
34975801 TAGACAGAGAATGAAC-TCTGTATGCG
1 TAGACAGAGAATGAACTTC-GTATGCG
*
34975827 TAGACATAGAATGAACTTCGTATGC
1 TAGACAGAGAATGAACTTCGTATGC
34975852 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.35, C:0.16, G:0.24, T:0.25
Consensus pattern (26 bp):
TAGACAGAGAATGAACTTCGTATGCG
Found at i:34975932 original size:196 final size:196
Alignment explanation
Indices: 34975595--34975951 Score: 477
Period size: 196 Copynumber: 1.8 Consensus size: 196
34975585 CCTTCGATCT
* * * *
34975595 GGTTCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGAGGATGAACTCCGTATGCCTAA
1 GGTTCAATCTTAGACAGAGAATGAACTCCGTATGCGTAGACTGAGAATGAACTCCGTATGCCTAA
* * * * * *
34975660 GTCATCACACGAAACGAGCGTGCGGGTGCTCAGTCGGTCGGAGAGGTAGAATGCGCAAGCCAGGG
66 GCCAACACACGAAACGAGCATGCGGGCGCTCAGTCGGCCGAAGAGGTAGAATGCGCAAGCCAGGG
* *
34975725 ATCGACCCGATCCCCCCTACGTGTTGTCGATCCTGCTGCTGGTCCTACTGCCGTAACCCTCGGTC
131 ACCGACCCGATCCCCCCTACGTGCTGTCGATCCTGCTGCTGGTCCTACTGCCGTAACCCTCGGTC
34975790 C
196 C
* *
34975791 GGTTCAATCTTAGACAGAGAATGAACTCTGTATGCGTAGACAT-AGAATGAACTTCGTATGCCTA
1 GGTTCAATCTTAGACAGAGAATGAACTCCGTATGCGTAGAC-TGAGAATGAACTCCGTATGCCTA
* * ***
34975855 AGCCAAC-CTATGAAACGAGCATGTGGGCGCTCAGAT-GGCCGAAGAGGTAGAATGCGCAAGTTG
65 AGCCAACAC-ACGAAACGAGCATGCGGGCGCTCAG-TCGGCCGAAGAGGTAGAATGCGCAAGCCA
* *
34975918 GGGACCGGCCCGATCCCCCCTATGTGCTGTCGAT
128 GGGACCGACCCGATCCCCCCTACGTGCTGTCGAT
34975952 GATCCTGCTA
Statistics
Matches: 137, Mismatches: 21, Indels: 6
0.84 0.13 0.04
Matches are distributed among these distances:
195 1 0.01
196 134 0.98
197 2 0.01
ACGTcount: A:0.24, C:0.26, G:0.28, T:0.22
Consensus pattern (196 bp):
GGTTCAATCTTAGACAGAGAATGAACTCCGTATGCGTAGACTGAGAATGAACTCCGTATGCCTAA
GCCAACACACGAAACGAGCATGCGGGCGCTCAGTCGGCCGAAGAGGTAGAATGCGCAAGCCAGGG
ACCGACCCGATCCCCCCTACGTGCTGTCGATCCTGCTGCTGGTCCTACTGCCGTAACCCTCGGTC
C
Found at i:34976254 original size:159 final size:160
Alignment explanation
Indices: 34975827--34976265 Score: 427
Period size: 159 Copynumber: 2.7 Consensus size: 160
34975817 TCTGTATGCG
* * * * **
34975827 TAGACATAGAATGAACTTCGTATGCCTAAGCCAACCTATGAAACGAGCATGTGGGCGCTCAGATG
1 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGCGCTCAGCCG
* * * * * * * **
34975892 GCCGAAGAGGTAGAATGCGCAAGTTGGGGACCGGCCCGATCCCCCCTATGTGCTGTCGATGATCC
66 GTCGGAGAGGTAGAATGCGCAAGTCGAGGATCGGCCCGGTCCCCCCTACGTGCTACCGA-GATCC
* *
34975957 TGCTACCACAACCCTCAGTCCGGTCCGATCT
130 TACTACCACAACCCTCAGTCCGGTCCGAGCT
** * * *
34975988 TAGAC-TGGAAATGAACTCCGTATGCCTAAGTTAACCCACGAAACGAGCGTTTGGGCGCTGAGCC
1 TAGACATGG-AATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGCGCTCAGCC
* * * * * * * *
34976052 GGTTGGAGAGGCATAATGCGCAAGTCGTA-GTTTGACCCAGTCCCCCTCTGCGTGCTACCG-G-T
65 GGTCGGAGAGGTAGAATGCGCAAGTCG-AGGATCGGCCCGGTCCCCC-CTACGTGCTACCGAGAT
* ** *
34976114 CCTACTACCACAACCCTCGGTCCGGTTGGGGCT
128 CCTACTACCACAACCCTCAGTCCGGTCCGAGCT
* * * *
34976147 TAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGACACGGGCGTGCGGGCGCTCAGCCG
1 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGCGCTCAGCCG
* * ** *
34976212 GTCGGAGAGGTAGAGTGTGCAACCCGAGGATCGGCCCGGTCCCTCCTACGTGCT
66 GTCGGAGAGGTAGAATGCGCAAGTCGAGGATCGGCCCGGTCCCCCCTACGTGCT
34976266 CTCGATCCTT
Statistics
Matches: 217, Mismatches: 56, Indels: 13
0.76 0.20 0.05
Matches are distributed among these distances:
158 9 0.04
159 111 0.51
160 6 0.03
161 82 0.38
162 9 0.04
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (160 bp):
TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGCGCTCAGCCG
GTCGGAGAGGTAGAATGCGCAAGTCGAGGATCGGCCCGGTCCCCCCTACGTGCTACCGAGATCCT
ACTACCACAACCCTCAGTCCGGTCCGAGCT
Found at i:34976353 original size:26 final size:26
Alignment explanation
Indices: 34976303--34976355 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
34976293 CTGGTTCGAT
**
34976303 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
34976329 CTTAGACTGAGG-ATGAACTCCGTATG
1 CTTAGACTG-GGAATGAACTCCGTATG
34976355 C
1 C
34976356 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34976418 original size:13 final size:13
Alignment explanation
Indices: 34976400--34976431 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
34976390 CAGCCAGCCG
34976400 GAGAGGTCGGTCA
1 GAGAGGTCGGTCA
*
34976413 GAGAGGTCGGTCG
1 GAGAGGTCGGTCA
34976426 GAGAGG
1 GAGAGG
34976432 CATAATGCGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.22, C:0.12, G:0.53, T:0.12
Consensus pattern (13 bp):
GAGAGGTCGGTCA
Found at i:34976824 original size:159 final size:159
Alignment explanation
Indices: 34976539--34976830 Score: 343
Period size: 159 Copynumber: 1.8 Consensus size: 159
34976529 AGACATGGAT
* * * * * *
34976539 TGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGTGCTCAGTCGGTCGGAGAGGC
1 TGAACTCCGTATGCCAAAGCCAACCCACAAAACGAGCGTGCGGGAGATCAGCCGGCCGAAGAGGC
* * * * * *
34976604 AGAATGCGCAAGCTGGGGATTGGCCCGATCCCCCCCTGCGAGCTGTCGATCCTATTACCACAACC
66 AGAATGCGCAAACCGGGGATCGGCCCAATCCCCCCCTGCGAGCTGTCGATCCCACTACCACAACC
34976669 CTCGGTCTGGTCTGATCTTAGATTAGGAA
131 CTCGGTCTGGTCTGATCTTAGATTAGGAA
* * ** * * *
34976698 TGAACTCTGTATGCCAAAGTCAACCCATGAAACGAGTGTGCGGGAGATGAGCCGGCCGAAGAGGG
1 TGAACTCCGTATGCCAAAGCCAACCCACAAAACGAGCGTGCGGGAGATCAGCCGGCCGAAGAGGC
* * * * * *
34976763 ATAATGCGCAAACCGGGGATCGGCCCAATCCGCCTCTGCGTGCTGTC-AGTCCCGCTGCCACAAC
66 AGAATGCGCAAACCGGGGATCGGCCCAATCCCCCCCTGCGAGCTGTCGA-TCCCACTACCACAAC
34976827 CCTC
130 CCTC
34976831 ATGCCCGGGT
Statistics
Matches: 107, Mismatches: 25, Indels: 2
0.80 0.19 0.01
Matches are distributed among these distances:
158 1 0.01
159 106 0.99
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.18
Consensus pattern (159 bp):
TGAACTCCGTATGCCAAAGCCAACCCACAAAACGAGCGTGCGGGAGATCAGCCGGCCGAAGAGGC
AGAATGCGCAAACCGGGGATCGGCCCAATCCCCCCCTGCGAGCTGTCGATCCCACTACCACAACC
CTCGGTCTGGTCTGATCTTAGATTAGGAA
Found at i:34977459 original size:26 final size:26
Alignment explanation
Indices: 34977430--34977482 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34977420 CCGGTTCGAT
*
34977430 CTTAGAC-TGGAAATGAACTTCGTATG
1 CTTAGACATGG-AATGAACTCCGTATG
34977456 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
34977482 C
1 C
34977483 CTAGGTGAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:34978169 original size:26 final size:26
Alignment explanation
Indices: 34978140--34978192 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34978130 TGGCTCAAAA
34978140 CTTAGAC-TGTGAATGAACTCCGTATG
1 CTTAGACATG-GAATGAACTCCGTATG
*
34978166 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCCGTATG
34978192 C
1 C
34978193 CTAAGCTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:34978560 original size:159 final size:159
Alignment explanation
Indices: 34978165--34978572 Score: 414
Period size: 159 Copynumber: 2.6 Consensus size: 159
34978155 AACTCCGTAT
* * * **
34978165 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCTAACCCACGAAACGAATGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * *
34978230 TCGGTCGGAGAGCCAGAATGCGCAAGTCGGGGATCGGCCCACTCCCCTCCTACATGCTGTCGATC
66 TCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCACTCCCCTCCTACATGCTGTCGATC
* ** * *
34978295 CTGCTACCACAACCCTTGGTCCGGTCTGT
131 CCGCTACCACAACCCTCAGTCCGATCTGG
* * * * *
34978324 TCTTAGAC-TGGGAATGAACTTCGTAT-CCATAAGTCAACCCATGAAACGAGCGTGCGGGTGCTA
1 GCTTAGACAT-GGAATGAACTCCGTATGCC-TAAGCCAACCCATGAAACGAGCGTGCGGGCGCTC
* * * * *
34978387 AG-CAGGCCGAAGAGGCATAATGCGCAAGCCGGGGATCGACCCGA-TCCCC-CTCTGCGTGCTGT
64 AGTC-GGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCC-ACTCCCCTC-CTACATGCTGT
* * *
34978449 CGGTCCCGCTACCACAACCCTCATTCTGAT-TGGG
126 CGATCCCGCTACCACAACCCTCAGTCCGATCT-GG
* * * * * *
34978483 GCTTAGACATGGAATGAACTCCCTATGCCCAAGCCAACCCATAAAACGGGCATACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* *
34978548 TCGATCGGAGAGGTAGAATGCGCAA
66 TCGGTCGGAGAGGCAGAATGCGCAA
34978573 ATCGAGGACC
Statistics
Matches: 198, Mismatches: 42, Indels: 18
0.77 0.16 0.07
Matches are distributed among these distances:
158 6 0.03
159 187 0.94
160 5 0.03
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.19
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
TCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCACTCCCCTCCTACATGCTGTCGATC
CCGCTACCACAACCCTCAGTCCGATCTGG
Found at i:34978678 original size:26 final size:26
Alignment explanation
Indices: 34978642--34978694 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
34978632 CTGGTCCGAT
*
34978642 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATAAACTCCATATG
* * *
34978668 CTTAGATTGGGGATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCATATG
34978694 C
1 C
34978695 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCATATG
Found at i:34979036 original size:26 final size:26
Alignment explanation
Indices: 34979007--34979059 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34978997 TCGGTCCGAT
34979007 CTTAAAC-TGGGAATGAACTCCGTATG
1 CTTAAACAT-GGAATGAACTCCGTATG
*
34979033 CTTAGACATGGAATGAACTCCGTATG
1 CTTAAACATGGAATGAACTCCGTATG
34979059 C
1 C
34979060 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAAACATGGAATGAACTCCGTATG
Found at i:34979335 original size:159 final size:157
Alignment explanation
Indices: 34979036--34979496 Score: 476
Period size: 159 Copynumber: 2.9 Consensus size: 157
34979026 CCGTATGCTT
*
34979036 AGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATAAGCATGCGGGCACTCAGCCGG
1 AGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATGCGGGCACTCAGCCGG
* * * * * * *
34979101 CCAGAGAGGCAGAATGCACAAGCCGGGGATCGACCCGGTTCTCACTTGCGTGCTGTCGATCCTAC
66 CCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCC-GATCCCCCTTGCGTGCTGTCGATCCTAC
*** *
34979166 TACTGTAACCCTCAGTCCGGTCT-GATCTG
130 TACCACAACCCTCAGT-CGGACTGGA-CTG
* * * * *
34979195 AGAC-TGGGAATAAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGCACTGAGCCG
1 AGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATGCGGGCACTCAGCCG
* * * *
34979259 GCCGGAGAGGCATAATGTGCAAGCCTGGGATCGGCCCGATCCCCCTTTGCGTGCTGTCGATCCTG
65 GCCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCGATCCCCC-TTGCGTGCTGTCGATCCTA
* ** * *
34979324 CTGCCACAACCCTTGGTCTGACTGGGACTT
129 CTACCACAACCCTCAGTCGGACT-GGACTG
* * * * *
34979354 AGACATGGAATGAACTCCTTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGGCGCTCAGCAG
1 AGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATGC-GGGCACTCAGCCG
* * * * ** ** *
34979419 GCCGGAGAGGCAAAATGCGCAAGTCGGGGATTGGCTCGATCCCCCCTATGTGCTACCGATCCTGC
65 GCCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTTGCGTGCTGTCGATCCTAC
*
34979484 TACCGCAACCCTC
130 TACCACAACCCTC
34979497 GATTCGATCT
Statistics
Matches: 247, Mismatches: 49, Indels: 12
0.80 0.16 0.04
Matches are distributed among these distances:
158 10 0.04
159 185 0.75
160 52 0.21
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (157 bp):
AGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATGCGGGCACTCAGCCGG
CCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTTGCGTGCTGTCGATCCTACT
ACCACAACCCTCAGTCGGACTGGACTG
Found at i:34985204 original size:26 final size:26
Alignment explanation
Indices: 34985153--34985205 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
34985143 CCGGTTCGAT
*
34985153 CTTAGACTGGAAATGAACTTCATATG
1 CTTAGACTGGAAATGAACTCCATATG
*
34985179 CTTAGACATGG-AATGAACTCCGTATG
1 CTTAGAC-TGGAAATGAACTCCATATG
34985205 C
1 C
34985206 CTAGGCGAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCATATG
Found at i:34987021 original size:158 final size:159
Alignment explanation
Indices: 34986542--34987201 Score: 538
Period size: 159 Copynumber: 4.2 Consensus size: 159
34986532 ATTCCATATG
* ** * * *
34986542 CTTAGACAT-GGAAAGAACTCCGTATGCCTAACCCAACCCACGAAATGAGTGTGCAGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
** * **
34986606 CCGGTCGGAGAGGCAGAATGC-GTAAGTCGGGGATCGACCC-AGTCTCC-CCTTGCTTGCTATCG
65 CCGACCGGAGAGGCAGAATGCAGTAAGTCGGGGATCGACCCGA-TC-CCACC-TGCATGCTGCCG
* * * *
34986668 ATCCTGCTGTCGCAACCCTCGGTCCGGTCCAAT
127 ATCCTGCTGCCACAACCCTCGATCCGGTCCGAT
* * ** * *
34986701 CTTACACTGGGAATGAACTCCATATG--TAAGTCAACCCGTGAAACGAGCGTGCGGGCGTTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * * * * *
34986764 CGATCGAAGAGGCATAAT-CCGTAAGTCGAGGATTGGCCTGGT-CCACCTCTGCGTGCTGCCGGT
66 CGACCGGAGAGGCAGAATGCAGTAAGTCGGGGATCGACCCGATCCCA-C-CTGCATGCTGCCGAT
* * ** **
34986827 CCTGCTGCCACAACCCTCGGTTCGGTTGGGG
129 CCTGCTGCCACAACCCTCGATCCGGTCCGAT
* * ** *
34986858 CTTAGACAT-GGAATGAGCTCCCTATGCCTAA-TCCAACCCATAAAACGAGTGTGCGGGCGCTCA
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGT-CAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * *
34986921 GTCGGCCGGAGAGGCAGAATGCAG-AAG-CTGGGGATCGACCCGATCCCACCTGTATGCTGCCAA
64 GCCGACCGGAGAGGCAGAATGCAGTAAGTC-GGGGATCGACCCGATCCCACCTGCATGCTGCCGA
* * *
34986984 TCCTGCTGCCGCAACCCTCGATCCAGTCTGAT
128 TCCTGCTGCCACAACCCTCGATCCGGTCCGAT
* *
34987016 CTTAGACTGGGAATGAACTCCGTAGGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * ** * * * * *
34987081 TGACCGGAGAGGCAGAATG-AGCAAGTTAGGGATCGGCCAGGTCCCCCCTAGCATGCTGTCGATC
66 CGACCGGAGAGGCAGAATGCAGTAAGTCGGGGATCGACCCGATCCCACCT-GCATGCTGCCGATC
* *
34987145 CTGCTGCCATAACCCTC-AGTCCTGTCCGAT
130 CTGCTGCCACAACCCTCGA-TCCGGTCCGAT
* *
34987175 CTTAGATTAGGAATGAACTCCGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
34987202 TTAGACATGG
Statistics
Matches: 393, Mismatches: 89, Indels: 38
0.76 0.17 0.07
Matches are distributed among these distances:
155 2 0.01
156 1 0.00
157 117 0.30
158 130 0.33
159 138 0.35
160 5 0.01
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.20
Consensus pattern (159 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGACCGGAGAGGCAGAATGCAGTAAGTCGGGGATCGACCCGATCCCACCTGCATGCTGCCGATCC
TGCTGCCACAACCCTCGATCCGGTCCGAT
Found at i:34987594 original size:159 final size:156
Alignment explanation
Indices: 34987200--34987637 Score: 441
Period size: 159 Copynumber: 2.8 Consensus size: 156
34987190 AACTCCGTAT
* *
34987200 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGACCGTACGGGCACTCAG
1 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
* * * * * *
34987265 C-GAGT-GGGGAGGTAGAATGCGCAAGCCGAGGATCAGCCTGGTCCCCCCCTGCGTGCTATCGAT
66 CTG-GTCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCC-GGT-CCCCCCTGCGTGCTACCGAT
** **
34987328 CCTGCTGCTGCAACCCTCGGTCCGATCGA
128 CCCACTGCCACAACCCTCGGTCCGATCGA
* * *** * * *
34987357 TCTTAGACTAT-GAATGAACTTCGTATGCCTAAGTCAATTGACGAAACAAGCGTACGGGCGTTGA
1 GCTTAGAC-ATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCA
* * * * *
34987421 GCTGATCGGAGAGGCATAATGCGTAAACTGGGGATCGGTCCGGTCCCCCTCTGCGTGCTACCGGT
65 GCTGGTCGGAGAGGCAGAATGCGCAAGCTGGGGATCGG-CCGGTCCCCC-CTGCGTGCTACCGAT
* * * *
34987486 CCCACTGCCACAACCCTCGGTCTGGCTGGG
128 CCCACTGCCACAACCCTCGGTC-CGATCGA
* * * * * *
34987516 GCTTAGACATGGAATGAACTACCTATGCCTAAGCCAACCCAAGAAACGAGCTTGCGAGCGCTCAG
1 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
* * *
34987581 CTGGTCGGTGAGGCAGAATGCGCAAGCTCGGGATCGACCCGGTCCCCCCTGCGTGCT
66 CTGGTCGGAGAGGCAGAATGCGCAAGCTGGGGATCG-GCCGGTCCCCCCTGCGTGCT
34987638 GTTGATCCTG
Statistics
Matches: 223, Mismatches: 50, Indels: 15
0.77 0.17 0.05
Matches are distributed among these distances:
157 59 0.26
158 71 0.32
159 93 0.42
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.19
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
CTGGTCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCGGTCCCCCCTGCGTGCTACCGATCCC
ACTGCCACAACCCTCGGTCCGATCGA
Found at i:34987726 original size:26 final size:26
Alignment explanation
Indices: 34987676--34987727 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
34987666 CAGACCAATT
*
34987676 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCATATGC
* *
34987702 TTAGACTGGGGATGAACTCTATATGC
1 TTAGACTGGGAATGAACTCCATATGC
34987728 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGC
Found at i:34988219 original size:159 final size:157
Alignment explanation
Indices: 34987833--34988245 Score: 404
Period size: 158 Copynumber: 2.6 Consensus size: 157
34987823 GTCGATCCCA
* * * *
34987833 CTACCGGTCCTGCTACCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTGCATATA
1 CTACCGGTCCTGCTACCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCATATG
** ** * * * *
34987898 CCTAAGCCAACCCACGAAACGAGTGTGCGGGTGCTTAGCCGATTGGAGAGGCAGAATACGTAAGC
66 CCTAAG-CAACCCACGAAACGAGCATGCGGGTGCAGACCCGACTGGAGAGGCAGAAGACGCAAGC
*
34987963 CAGAGATTGACCCAGTGCCCCCCACGTG
130 CAGAGATAGACCCAGTGCCCCCCACGTG
** * * * ** * *
34987991 CTGTCGATCCTGCTGCCACAACCCTCAATCCGATCT-GATCTTAGA-TTGGGAATGAACTCCGTA
1 CTACCGGTCCTGCTACCACAACCCTCAGTCCGA-CTGGGGCTTAGACAT-GGAATGAACTCCATA
* * *
34988054 TGCCTAAGTCAACCCACGAAATGAGCATGCGGGTGCAGACCCGACTGGAGAGGCATAAGATGCAA
64 TGCCTAAG-CAACCCACGAAACGAGCATGCGGGTGCAGACCCGACTGGAGAGGCAGAAGACGCAA
*
34988119 GCCAGAGATCAG-CTC-GAT-CCCCCTCTACGTG
128 GCCAGAGAT-AGACCCAG-TGCCCCC-C-ACGTG
** * * *
34988150 CTACCGGTCCCACTACCACATCCCTCAGTCCGACTGGGGCTTAGACATGGAATGAGCTCCCTATG
1 CTACCGGTCCTGCTACCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCATATG
* * *
34988215 CCTAAGCTAACCCACAAAACGGGCATACGGG
66 CCTAAGC-AACCCACGAAACGAGCATGCGGG
34988246 CACTTAGCTG
Statistics
Matches: 202, Mismatches: 44, Indels: 17
0.77 0.17 0.06
Matches are distributed among these distances:
157 7 0.03
158 114 0.56
159 80 0.40
160 1 0.00
ACGTcount: A:0.26, C:0.31, G:0.25, T:0.19
Consensus pattern (157 bp):
CTACCGGTCCTGCTACCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCATATG
CCTAAGCAACCCACGAAACGAGCATGCGGGTGCAGACCCGACTGGAGAGGCAGAAGACGCAAGCC
AGAGATAGACCCAGTGCCCCCCACGTG
Found at i:34988383 original size:26 final size:26
Alignment explanation
Indices: 34988347--34988399 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
34988337 CTGGTCCAAT
34988347 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
34988373 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
34988399 C
1 C
34988400 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34988932 original size:157 final size:158
Alignment explanation
Indices: 34988703--34989044 Score: 361
Period size: 157 Copynumber: 2.2 Consensus size: 158
34988693 TCGGTTGGGG
* ** * *
34988703 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTACGGTCGCTCGA
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTACGGGCACTCGA
* * ** * *
34988767 CCTGTCGGAGAGGTAGAATGTGCAAGTCGAGGATCGATCC-GGTCCCCCCTGCGTCCTGTCGATC
65 CCTGTCGGACAGGCAGAATGCACAAGCCGAGGATCGA-CCTGGTCCCCCCTGCATCCTGTCGATC
** *
34988831 CTGCTACCGC-ACCCTCAGTCTGGTCTGAT
129 CTGCTACCGCAACCCTCAGTCCAGTCCGAT
* * ** *
34988860 CTTAGATTGGGAATAAACTCCGTATGCCTAAGTTAACCCACGAAACAAGCGTGCGGGCACT-GAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTACGGGCACTCGA-
* * * **
34988924 CC-GATCGGACAGGCATAATGCACAAGCCGGGGATCGACCTGGTCCCCCCTGTATGTTGTCGATC
65 CCTG-TCGGACAGGCAGAATGCACAAGCCGAGGATCGACCTGGTCCCCCCTGCATCCTGTCGATC
** *
34988988 CTGCTGTCGCAACCCTCGGTCCAGTCCGAT
129 CTGCTACCGCAACCCTCAGTCCAGTCCGAT
*
34989018 CTTAGACTGGGAATGAACTTCGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
34989045 TTAGACTGGG
Statistics
Matches: 150, Mismatches: 30, Indels: 9
0.79 0.16 0.05
Matches are distributed among these distances:
156 6 0.04
157 105 0.70
158 39 0.26
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.22
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTACGGGCACTCGAC
CTGTCGGACAGGCAGAATGCACAAGCCGAGGATCGACCTGGTCCCCCCTGCATCCTGTCGATCCT
GCTACCGCAACCCTCAGTCCAGTCCGAT
Found at i:34989054 original size:26 final size:26
Alignment explanation
Indices: 34989018--34989070 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34989008 CCAGTCCGAT
*
34989018 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
34989044 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
34989070 C
1 C
34989071 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:34989081 original size:671 final size:669
Alignment explanation
Indices: 34987358--34989742 Score: 2583
Period size: 672 Copynumber: 3.5 Consensus size: 669
34987348 TCCGATCGAT
* * * *** ** * *
34987358 CTTAGACTAT-GAATGAACTTCGTATGCCTAAGTCAATTGACGAAACAAGCGTACGGGCG-TTGA
1 CTTAGAC-ATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTACGGTCGCTCGA
* * * * * * ** ** *
34987421 GCTGATCGGAGAGGCATAATGCGTAAACTGGGGATCGGTCCGGTCCCCCTCTGCGTGCTACCGGT
65 CCTG-TCGGAGAGGCAGAATGTGCAAGC-GAGGATCGACCCGGTCCCCC-CTGCGTGCTGTCGAT
* * * * **
34987486 CCCACTGCCACAACCCTCGGTCTGG-CTGGGGCTTAGACAT-GGAATGAACTACC-TATGCCTAA
127 CCTACTACCGC-ACCCTCAGTCTGGTCT-GATCTTAGA-ATGGGAATGAACT-CCGTATGCCTAA
** * * * * * * * * **
34987548 GCCAACCCAAGAAACGAGCTTGCGAGCGCTCAGCTGGTCGGTGAGGCAGAATGCGCAAGCTC-GG
188 GTTAACCCACGAAACAAGCATGCGGGCACTGAGCCGATCGGACAGGCAGAATGCGCAAGC-CGGG
* * * * * * *
34987612 GATCGACCCGGTCCCCCCTGCGTGCTGTTGATCCTGCT-ACTGCAACCCTCAGTTCAGACCAATT
252 GATCGACCCGGTCCCCCCTGCATGCTGTCGATCCTGCTGTC-GCAACCCTCGGTCCAGTCCAATC
*
34987676 TTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCTATATGCCTAAGTCAACCCA
316 TTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCA
* * * * * * * *
34987741 TGAAACGAGCGTGCGGGCACTCAGCCGGTTGGAGAGGCATAACGCGTAAGTCGAGGATCAGCCCG
381 TGAAATGAGCGTACGGGCGCTCAGTCGGATGGAGAGGCATAATGCGCAAGCCGAGGATCAGCCCG
* * * * *
34987806 ATCCCCCTCTGCATGCTGTCGATCCCACTACCGGTCCTGCTACCACAACCCTCGGTCCGGCTGGG
446 GTCCCCCTCTGCATGTTGTCGATCCCACTGCCAGTCCTGCTACCACAACCCTCGGTCTGGCTGGG
* * * * * *
34987871 GCTTAGACATGGAATGAACTGCATATACCTAAGCCAACCCACGAAACGAGTGTGCGGGTGCTTAG
511 GCTTAGACAAGGAATGAACT-CGTATACCTAAGCCAACCCACAAAACGAGTGTGCAGGCGCTGAG
** * * * * ** * * * * * * *
34987936 CCGATTGGAGAGGCAGAATACGTAAGCCAGAGATTGAC-CCAGTGCCCCC-C-ACGTGCTGTCGA
575 CCGACCGAAGAGGCATAATGCGCAAGCTGGGGATCGGCTCGA-T-CCCCCTCTGCGTGCTGCCAA
*** * * **
34987998 TCCTGCTGCCACAACCCTCAATCCGATCT-GAT
638 TCCCATTGCCACAACCCTCGATCCGGT-TGGGG
* * * * * * * *
34988030 CTTAGA-TTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATGCGGGT-GC-AG
1 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTAC-GGTCGCTCG
* * * * * * * **
34988092 ACCCGACTGGAGAGGCATAA-GATGCAAGCCAGAGATC-AGCTCGATCCCCCTCTACGTGCTACC
64 ACCTGTC-GGAGAGGCAGAATG-TGCAAGCGAG-GATCGA-CCCGGTCCCCC-CTGCGTGCTGTC
* * * * * ** * *
34988155 GGTCCCACTACCACATCCCTCAGTC-CGACTGGGGCTTAGACAT-GGAATGAGCTCCCTATGCCT
124 GATCCTACTACCGCA-CCCTCAGTCTGGTCT-GATCTTAGA-ATGGGAATGAACTCCGTATGCCT
* * ** * * * * ** * *
34988218 AAGCTAACCCACAAAACGGGCATACGGGCACTTAGCTGACCGGAGTGGCAGAATCCGCAAGCTGG
186 AAGTTAACCCACGAAACAAGCATGCGGGCACTGAGCCGATCGGACAGGCAGAATGCGCAAGCCGG
* ** * * * ** * **
34988283 GGATCGGCCTAGTCCCCCCTACGTGCTGTCGATCCTACTACCGTAACCCTCGGTCTGGTCCAATC
251 GGATCGACCCGGTCCCCCCTGCATGCTGTCGATCCTGCTGTCGCAACCCTCGGTCCAGTCCAATC
*
34988348 TTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCA
316 TTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCA
* *
34988413 TGAAATTAGTGTACGGGCGCTCAGTCGGATGGAGAGGCATAATGCGCAAGCCGAGGATCAGCCCG
381 TGAAATGAGCGTACGGGCGCTCAGTCGGATGGAGAGGCATAATGCGCAAGCCGAGGATCAGCCCG
* * *
34988478 GTCCCCCTCTGCATGTTGTCGATCCCGCTGCCAGTCCTACTGCCACAACCCTCGGTCTGGCTGGG
446 GTCCCCCTCTGCATGTTGTCGATCCCACTGCCAGTCCTGCTACCACAACCCTCGGTCTGGCTGGG
* * ** * *
34988543 GCTTAGACAAGGAATGAACTCTGTATGCCTAAACCAACCCATTAAATGAGTGTGCAGGCACTGAG
511 GCTTAGACAAGGAATGAACTC-GTATACCTAAGCCAACCCACAAAACGAGTGTGCAGGCGCTGAG
*
34988608 CCGACCGAAGAGGCATAATGCGCAAGCTGGGGATCGGCTCGATCCCCCTCTGCGTGCTACCAATC
575 CCGACCGAAGAGGCATAATGCGCAAGCTGGGGATCGGCTCGATCCCCCTCTGCGTGCTGCCAATC
* *
34988673 CCATTGCCACAACCCTTGATTCGGTTGGGG
640 CCATTGCCACAACCCTCGATCCGGTTGGGG
34988703 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTACGGTCGCTCGAC
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTACGGTCGCTCGAC
* * *
34988768 CTGTCGGAGAGGTAGAATGTGCAAGTCGAGGATCGATCCGGTCCCCCCTGCGTCCTGTCGATCCT
66 CTGTCGGAGAGGCAGAATGTGCAAG-CGAGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCCT
* * *
34988833 GCTACCGCACCCTCAGTCTGGTCTGATCTTAGATTGGGAATAAACTCCGTATGCCTAAGTTAACC
130 ACTACCGCACCCTCAGTCTGGTCTGATCTTAGAATGGGAATGAACTCCGTATGCCTAAGTTAACC
* * *
34988898 CACGAAACAAGCGTGCGGGCACTGAGCCGATCGGACAGGCATAATGCACAAGCCGGGGATCGACC
195 CACGAAACAAGCATGCGGGCACTGAGCCGATCGGACAGGCAGAATGCGCAAGCCGGGGATCGACC
* * * *
34988963 TGGTCCCCCCTGTATGTTGTCGATCCTGCTGTCGCAACCCTCGGTCCAGTCCGATCTTAGACTGG
260 CGGTCCCCCCTGCATGCTGTCGATCCTGCTGTCGCAACCCTCGGTCCAGTCCAATCTTAGACTGG
* * *
34989028 GAATGAACTTCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAG
325 GAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCATGAAATGAG
* * * *
34989093 CGTACGGGCGCTCAGTCGGCTGGAGAGGCATAATGCGCAAGCCAAGGATCAGTCTGGTCCCCCTC
390 CGTACGGGCGCTCAGTCGGATGGAGAGGCATAATGCGCAAGCCGAGGATCAGCCCGGTCCCCCTC
* * * *
34989158 TGCATGTTGTCAATCTCACTGCCAGTCCTGCTCCCACAACCCTCGATCTGGCTGGGGCTTAGACA
455 TGCATGTTGTCGATCCCACTGCCAGTCCTGCTACCACAACCCTCGGTCTGGCTGGGGCTTAGACA
* *
34989223 AGGAATGAACTCCGTATCCCTAAGCCAACCCACAAAACGAGTGTGCAGGCGCTGAGCTGACCGAA
520 AGGAATGAACT-CGTATACCTAAGCCAACCCACAAAACGAGTGTGCAGGCGCTGAGCCGACCGAA
* *
34989288 GAGGCATAATGCGCAAGCTGGGGATCGGCTCGATCCCCCTCTGCGTGCTGGCAGTCCCATTGCCA
584 GAGGCATAATGCGCAAGCTGGGGATCGGCTCGATCCCCCTCTGCGTGCTGCCAATCCCATTGCCA
34989353 CAACCCTCGATCCGGTTGGGG
649 CAACCCTCGATCCGGTTGGGG
*
34989374 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTACGGTCGCTCGGC
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTACGGTCGCTCGAC
* * *
34989439 CTGTCAGATAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCCT
66 CTGTCGGAGAGGCAGAATGTGCAAG-CGAGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCCT
* * * *
34989504 ACTACCGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAAGTTAAC
130 ACTACCGC-ACCCTCAGTCTGGTCTGATCTTAGAATGGGAATGAACTCCGTATGCCTAAGTTAAC
* ** * * * *
34989569 CCACGAAACAAGCTTGCGGGTGCTGAGCCGATCGGACAGGCATAATGGGCAAGCCAGGGATCGGC
194 CCACGAAACAAGCATGCGGGCACTGAGCCGATCGGACAGGCAGAATGCGCAAGCCGGGGATCGAC
* * * * *
34989634 CCGGTCCCCCCTGTATGTTGCCGGTCCTGCTGTCGCAACCCTCGGTCCAGTCCGATCTTAGACTG
259 CCGGTCCCCCCTGCATGCTGTCGATCCTGCTGTCGCAACCCTCGGTCCAGTCCAATCTTAGACTG
34989699 GGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCATATGC
324 GGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCATATGC
34989743 TTAGACTGGG
Statistics
Matches: 1460, Mismatches: 225, Indels: 56
0.84 0.13 0.03
Matches are distributed among these distances:
670 2 0.00
671 604 0.41
672 733 0.50
673 109 0.07
674 12 0.01
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.21
Consensus pattern (669 bp):
CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTACGGTCGCTCGAC
CTGTCGGAGAGGCAGAATGTGCAAGCGAGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCCTA
CTACCGCACCCTCAGTCTGGTCTGATCTTAGAATGGGAATGAACTCCGTATGCCTAAGTTAACCC
ACGAAACAAGCATGCGGGCACTGAGCCGATCGGACAGGCAGAATGCGCAAGCCGGGGATCGACCC
GGTCCCCCCTGCATGCTGTCGATCCTGCTGTCGCAACCCTCGGTCCAGTCCAATCTTAGACTGGG
AATGAACTCCGTATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCATGAAATGAGC
GTACGGGCGCTCAGTCGGATGGAGAGGCATAATGCGCAAGCCGAGGATCAGCCCGGTCCCCCTCT
GCATGTTGTCGATCCCACTGCCAGTCCTGCTACCACAACCCTCGGTCTGGCTGGGGCTTAGACAA
GGAATGAACTCGTATACCTAAGCCAACCCACAAAACGAGTGTGCAGGCGCTGAGCCGACCGAAGA
GGCATAATGCGCAAGCTGGGGATCGGCTCGATCCCCCTCTGCGTGCTGCCAATCCCATTGCCACA
ACCCTCGATCCGGTTGGGG
Found at i:34989472 original size:159 final size:158
Alignment explanation
Indices: 34989191--34989495 Score: 391
Period size: 159 Copynumber: 1.9 Consensus size: 158
34989181 AGTCCTGCTC
* *
34989191 CCACAACCCTCGATCTGGCTGGGGCTTAGACAAGGAATGAACTCCGTATCCCTAAGCCAACCCAC
1 CCACAACCCTCGATCCGGCTGGGGCTTAGACAAGGAATGAACTCCCTATCCCTAAGCCAACCCAC
* * * * * * * *
34989256 AAAACGAGTGTGCAGGCGCTGAGCTGACCGAAGAGGCATAATGCGCAAGCTGGGGATCGGCTCGA
66 AAAACGAGCGTACAGGCGCTGAGCTGACAGAAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGA
34989321 TCCCCCTCTGCGTGCTGGCAGTCCCATTG
131 TCCCCC-CTGCGTGCTGGCAGTCCCATTG
* * *
34989350 CCACAACCCTCGATCCGGTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
1 CCACAACCCTCGATCCGGCTGGGGCTTAGACAAGGAATGAACTCCCTATCCCTAAGCCAACCCAC
* * * *
34989415 GAAACGGGCGTAC-GGTCGCTCG-GCCTGTCAG-ATAGGCAGAATGCGCAAGCCGAGGATCGACC
66 AAAACGAGCGTACAGG-CGCT-GAG-CTGACAGAAGAGGCAGAATGCGCAAGCCGAGGATCGACC
*
34989477 CGGTCCCCCCTGCGTGCTG
128 CGATCCCCCCTGCGTGCTG
34989496 TCGATCCTAC
Statistics
Matches: 125, Mismatches: 18, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
158 12 0.10
159 107 0.86
160 6 0.05
ACGTcount: A:0.23, C:0.32, G:0.28, T:0.17
Consensus pattern (158 bp):
CCACAACCCTCGATCCGGCTGGGGCTTAGACAAGGAATGAACTCCCTATCCCTAAGCCAACCCAC
AAAACGAGCGTACAGGCGCTGAGCTGACAGAAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGA
TCCCCCCTGCGTGCTGGCAGTCCCATTG
Found at i:34989572 original size:158 final size:158
Alignment explanation
Indices: 34989374--34989719 Score: 387
Period size: 158 Copynumber: 2.2 Consensus size: 158
34989364 CCGGTTGGGG
* * **
34989374 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTAC-GGTCGCTCG
1 CTTAGAC-TGGGAATGAACTCCGTATGCTTAAGCCAACCCACGAAACAAGCGTACGGGT-GCT-G
* * *
34989437 -GCCTG-TCAGATAGGCAGAATGCGCAAGCC-GAGGATCGACCCGGTCCCCCCTGCGTGCTGTCG
63 AGCC-GATCAGACAGGCAGAATGCGCAAGCCAG-GGATCGACCCGGTCCCCCCTGCATGCTGCCG
**
34989499 ATCCTACTACCGCAACCCTCAGTCTGGTCCGAT
126 ATCCTACTACCGCAACCCTCAGTCCAGTCCGAT
* ** * *
34989532 CTTAGACTGGGAATGAACTCTGTATGCTTAAGTTAACCCACGAAACAAGCTTGCGGGTGCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCTTAAGCCAACCCACGAAACAAGCGTACGGGTGCTGAGC
* * * * * * *
34989597 CGATCGGACAGGCATAATGGGCAAGCCAGGGATCGGCCCGGTCCCCCCTGTATGTTGCCGGTCCT
66 CGATCAGACAGGCAGAATGCGCAAGCCAGGGATCGACCCGGTCCCCCCTGCATGCTGCCGATCCT
* ** *
34989662 GCTGTCGCAACCCTCGGTCCAGTCCGAT
131 ACTACCGCAACCCTCAGTCCAGTCCGAT
34989690 CTTAGACTGGGAATGAACTCCGTATGCTTA
1 CTTAGACTGGGAATGAACTCCGTATGCTTA
34989720 GACTGGGGAT
Statistics
Matches: 157, Mismatches: 26, Indels: 10
0.81 0.13 0.05
Matches are distributed among these distances:
157 3 0.02
158 150 0.96
159 4 0.03
ACGTcount: A:0.22, C:0.31, G:0.27, T:0.21
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCGTATGCTTAAGCCAACCCACGAAACAAGCGTACGGGTGCTGAGC
CGATCAGACAGGCAGAATGCGCAAGCCAGGGATCGACCCGGTCCCCCCTGCATGCTGCCGATCCT
ACTACCGCAACCCTCAGTCCAGTCCGAT
Found at i:34989719 original size:26 final size:26
Alignment explanation
Indices: 34989690--34989768 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
34989680 CCAGTCCGAT
*
34989690 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
*
34989716 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGGATGAACTCCGTATG
34989742 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
34989768 C
1 C
34989769 CTAAGTCAAC
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCGTATG
Found at i:34990120 original size:26 final size:26
Alignment explanation
Indices: 34990084--34990136 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34990074 CTGGTCAAAT
34990084 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
* *
34990110 CTTAGACTGGGGATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
34990136 C
1 C
34990137 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:34995321 original size:26 final size:26
Alignment explanation
Indices: 34995269--34995321 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
34995259 GTTGACTTAG
* * * *
34995269 GCATATAGAGTTCATCCCCAGTGTAA
1 GCATACAGAGTTCATCCCAAATCTAA
*
34995295 GCATACAGAGTTCATTCCAAATCTAA
1 GCATACAGAGTTCATCCCAAATCTAA
34995321 G
1 G
34995322 ATTGGATCGG
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.34, C:0.23, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCAAATCTAA
Found at i:34995666 original size:159 final size:158
Alignment explanation
Indices: 34995381--34995670 Score: 361
Period size: 159 Copynumber: 1.8 Consensus size: 158
34995371 GACTGGGCCA
* * * * * * *
34995381 ATCCCCAGCTTATGCATTCTGCCTCTCCGACCGGTTGAGTGCCCGCACGTCCATTTCATGGGTTG
1 ATCCCCAACTTACGCATTATGCCTCTCCGACCGGCTCAGTGCCCGCACCTCCATTTCAAGGGTTG
* * ***
34995446 GCTTAGGCATAGGGAGTTCATTCCATGTCTAAGTCCCAGTCGGATCGACGGTTGTGGTAGCAGGA
66 GCTTAGGCATACGGAGTTCATTCCATGTCTAAGT-CCAGCCGGATCGACGGTTGCAATAGCAGGA
34995511 CCGGCATGACGCTTACGGGGACGGGGTCG
130 CCGGCATGACGCTTACGGGGACGGGGTCG
* *
34995540 ATCCCCAACTTACGCATTATGCCTCTTCGGCCGGCTCAGTGCCCGCACACT-CATTTCAAGGGTT
1 ATCCCCAACTTACGCATTATGCCTCTCCGACCGGCTCAGTGCCCGCAC-CTCCATTTCAAGGGTT
* * *
34995604 GTCTTATGCATACGGAGTTCATTCCCA-GTCTAAGAT-CAGACCGGATCGAGGGTTGCAATAGCA
65 GGCTTAGGCATACGGAGTTCATT-CCATGTCTAAG-TCCAG-CCGGATCGACGGTTGCAATAGCA
34995667 GGAC
127 GGAC
34995671 TGACAGCACG
Statistics
Matches: 110, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
158 3 0.03
159 102 0.93
160 5 0.05
ACGTcount: A:0.20, C:0.28, G:0.27, T:0.25
Consensus pattern (158 bp):
ATCCCCAACTTACGCATTATGCCTCTCCGACCGGCTCAGTGCCCGCACCTCCATTTCAAGGGTTG
GCTTAGGCATACGGAGTTCATTCCATGTCTAAGTCCAGCCGGATCGACGGTTGCAATAGCAGGAC
CGGCATGACGCTTACGGGGACGGGGTCG
Found at i:34995797 original size:26 final size:26
Alignment explanation
Indices: 34995768--34995820 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34995758 GTTGGCTTAG
34995768 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
34995794 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
34995820 G
1 G
34995821 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:34997340 original size:26 final size:26
Alignment explanation
Indices: 34997304--34997356 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
34997294 GTTGACTTGG
34997304 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
*
34997330 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
34997356 G
1 G
34997357 ATTGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATATGGAGTTCATCCCCAGTCTAA
Found at i:34997999 original size:158 final size:158
Alignment explanation
Indices: 34997620--34998171 Score: 436
Period size: 158 Copynumber: 3.5 Consensus size: 158
34997610 TCTCCGACCG
* * * * *
34997620 GCCTCTCTGATCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCA
1 GCCTCTCCGATCGACTCAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* ** * * *** * * * *
34997685 TTCCCA-GTTTAAGATCGGATCGGAGTGAGGGTTGCGACAGCAGGATCGACAGCATGCAGGGGG-
66 TT-CCATGTCTAAGCCCAGACCGGACCAAGGGTTACGGCAACAGGATCGACAGCACGCAGGGGGA
* * * * *
34997748 ACCGAGCCGATCCCCAACTTGCGCATTCT
130 ATCGGGCCGATCCCCAGCTTACGCATTAT
** * * * * * ** *
34997777 GCCTCTCCGGCCGGCTGAGCGCCCAG-ACG-TCCGTTTCTTGGATTGGTTTAGGCATAGGGAGTT
1 GCCTCTCCGATCGACTCAGCGCCC-GCACGCT-CATTTCGTGGGTTGACTTAGGCATACGGAGTT
* * ** **
34997840 CATTCCGTGGCTAAGCCCTAG-CCGGACCAAGGGTTGTGGCAACAGGAAT-GGTAGCACGCAGAA
64 CATTCCATGTCTAAGCCC-AGACCGGACCAAGGGTTACGGCAACAGG-ATCGACAGCACGCAG--
** *
34997903 GGGG-ATCGGGCCGATCCCTGGCTTGC-CATTAT
125 GGGGAATCGGGCCGATCCCCAGCTTACGCATTAT
* * * * * *
34997935 GCCTCTTCGGTCGGCTCAGTGCCCGCTCGCTCATTTCGTGGGTTGACTTATGCATACGGAGTTCA
1 GCCTCTCCGATCGACTCAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* ** * * * * *
34998000 TTCCTTGTCTAAGATCGGACTGGACCGAGGGTTACGGTAGCAGGATCGACAGCACGCAGGGGGAA
66 TTCCATGTCTAAGCCCAGACCGGACCAAGGGTTACGGCAACAGGATCGACAGCACGCAGGGGGAA
* *
34998065 TCGGGTCGATCCCCAGCTTACGCATTCT
131 TCGGGCCGATCCCCAGCTTACGCATTAT
* * * *
34998093 GCCTCTCCGATCGATTGAGCGCCCGCACGTTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCA
1 GCCTCTCCGATCGACTCAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCA
34998158 TTCCATGTCTAAGC
66 TTCCATGTCTAAGC
34998172 ATATGGAGTT
Statistics
Matches: 310, Mismatches: 72, Indels: 25
0.76 0.18 0.06
Matches are distributed among these distances:
156 7 0.02
157 110 0.35
158 171 0.55
159 22 0.07
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.24
Consensus pattern (158 bp):
GCCTCTCCGATCGACTCAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCA
TTCCATGTCTAAGCCCAGACCGGACCAAGGGTTACGGCAACAGGATCGACAGCACGCAGGGGGAA
TCGGGCCGATCCCCAGCTTACGCATTAT
Found at i:34998180 original size:26 final size:26
Alignment explanation
Indices: 34998144--34998196 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34998134 GTTGGCTTAG
34998144 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
34998170 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
34998196 G
1 G
34998197 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:34998897 original size:26 final size:26
Alignment explanation
Indices: 34998867--34998919 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34998857 GTTGACTTAG
34998867 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
34998893 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
34998919 G
1 G
34998920 ATCAGATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:34999264 original size:26 final size:27
Alignment explanation
Indices: 34999226--34999279 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 27
34999216 GTTGACTTAG
*
34999226 GCATACGGAGTTC-ATCCCCTGTCTAA
1 GCATACGGAGTTCGATCCCCAGTCTAA
*
34999252 GCATAC-GAGGTTCGATTCCCAGTCTAA
1 GCATACGGA-GTTCGATCCCCAGTCTAA
34999279 G
1 G
34999280 ATCGAACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
25 2 0.08
26 10 0.42
27 12 0.50
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (27 bp):
GCATACGGAGTTCGATCCCCAGTCTAA
Found at i:34999793 original size:26 final size:26
Alignment explanation
Indices: 34999743--34999795 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
34999733 GTTGGCTTAG
*
34999743 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
34999769 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
34999795 G
1 G
34999796 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:35001102 original size:317 final size:317
Alignment explanation
Indices: 35000479--35001259 Score: 948
Period size: 317 Copynumber: 2.5 Consensus size: 317
35000469 TCAACATGTG
* * * * *
35000479 GAGTTCATTCCTAGTTTAAGATCGGACCGGGTC-GAGGGTTGCGACAGTAGGATCGACAGCACGT
1 GAGTTCATTCCCAGTCTAAGATCGGA-CTGGACAGAGGGTTGCGACAGTAGGATCGACAGCATGT
** * * * * * * **
35000543 A-GGGGGGACTGGGCCGATCCTCAGCTTGTGCATTCTACCTCTCTGGTCGGCTGAGTGCCCGCAC
65 AGGGGGGGACCAGGACGATCCTCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCACCCGCAC
* * * *
35000607 GCTCATTTCGTGGGTTGGCTTAGGCATAGGAAGTTCATTCCATGTCTAAGCCCCAACCGAACTGA
130 GCTCATTCCGTGGCTTGGCTTAGGCATAGGAAGTTCATTCCATGTCTAAGCACCAACCGAACCGA
* * * ** *
35000672 GGGTTGTGGTAGCGGGACCGGCAGCACGCAGAGGGGGCCTGGGTCGATCCCCAACTTGCGCTTTA
195 GGGTTGTGGCAGCGGGACCGACAGCACGCAAAGGGGGCC-GGACCGATCCCCAACTTGCGCATTA
* *
35000737 TGCCTTTTCGGCCGGCTCAGCGCCCACATGCTAGTTTTGTGCGTTGACTTATGCATACA
259 TGCCTCTTCGGCCAGCTCAGCGCCCACATGCTAGTTTTGTGCGTTGACTTATGCATACA
* *
35000796 GAGTTCATTCCCAGTCTAAGATCAGACTGGACAGAGGGTTGCGACAGTAGGATCGACAGCATGCA
1 GAGTTCATTCCCAGTCTAAGATCGGACTGGACAGAGGGTTGCGACAGTAGGATCGACAGCATGTA
* * *
35000861 GGGGGGGACCAGGACGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGTTGAGCACCCGCACT
66 GGGGGGGACCAGGACGATCCTCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCACCCGCACG
* * *
35000926 CTCATTCCGTGGCTTGGCTTAGGCATACGG-AGTTCATTCCATGTCTAAGCACCAGCTGGACCGA
131 CTCATTCCGTGGCTTGGCTTAGGCATA-GGAAGTTCATTCCATGTCTAAGCACCAACCGAACCGA
***
35000990 GGGTTGTGGCAGCGGGACCGACAGCACGCAAAGGGGGACC-GACCGATCCCTGGCTTGCGCATTA
195 GGGTTGTGGCAGCGGGACCGACAGCACGCAAAGGGGG-CCGGACCGATCCCCAACTTGCGCATTA
* * * * *
35001054 TGCCTCTTCGGTCAGCTCAGTGCCCGCATGCTCGTTTTGTGGGTTGACTTATGCATACA
259 TGCCTCTTCGGCCAGCTCAGCGCCCACATGCTAGTTTTGTGCGTTGACTTATGCATACA
** * *
35001113 GA-TATCATTCCCAGTCTAAGATCGGA-TCAAACCA-AGGGTTGCGGCAGCAGGATCGACAGCAT
1 GAGT-TCATTCCCAGTCTAAGATCGGACT-GGA-CAGAGGGTTGCGACAGTAGGATCGACAGCAT
* * ** *
35001175 GTAGGGGGCGACCAGGTCGATCCTCGGCTTGCGCATTCTGCCTCTCCGATCGACTGAG-AGCCCG
63 GTAGGGGGGGACCAGGACGATCCTCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCA-CCCG
* *
35001239 CACGCTCATTTCGTGGGTTGG
127 CACGCTCATTCCGTGGCTTGG
35001260 GTGCTGGTAC
Statistics
Matches: 397, Mismatches: 59, Indels: 16
0.84 0.12 0.03
Matches are distributed among these distances:
316 7 0.02
317 245 0.62
318 141 0.36
319 4 0.01
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.23
Consensus pattern (317 bp):
GAGTTCATTCCCAGTCTAAGATCGGACTGGACAGAGGGTTGCGACAGTAGGATCGACAGCATGTA
GGGGGGGACCAGGACGATCCTCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCACCCGCACG
CTCATTCCGTGGCTTGGCTTAGGCATAGGAAGTTCATTCCATGTCTAAGCACCAACCGAACCGAG
GGTTGTGGCAGCGGGACCGACAGCACGCAAAGGGGGCCGGACCGATCCCCAACTTGCGCATTATG
CCTCTTCGGCCAGCTCAGCGCCCACATGCTAGTTTTGTGCGTTGACTTATGCATACA
Found at i:35001151 original size:158 final size:158
Alignment explanation
Indices: 35000479--35001219 Score: 502
Period size: 159 Copynumber: 4.7 Consensus size: 158
35000469 TCAACATGTG
* * * * ** * * * * *
35000479 GAGTTCATTCCTAGTTTAAGATCGGACCGGGTCGAGGGTTGCGACAGTAGGATCGACAGCACGTA
1 GAGTTCATTCCCAGTCTAAGATCAGATCGGACCAAGGGTTGCGGCAGCAGGACCGACAGCACGCA
* * * * * * * * * * *
35000544 G-GGGGGACTGGGCCGATCCTCAGCTTGTGCATTCTACCTC-TCTGGTCGGCTGAGTGCCCGCAC
66 GAGGGGGAC-CGGACGATCCCCGGCTTGCGCATTATGCCTCTTC-GGCCGGCTCAGCGCCCGCAT
* * * * *
35000607 GCTCATTTCGTGGGTTGGCTTAGGCATA-G
129 GCTCGTTTTGTGGGTTGACTTATGCATACA
** * * ** * * * *
35000636 GAAGTTCATT-CCATGTCTAAGCCCCA-ACCGAACTGAGGGTTGTGGTAGCGGGACCGGCAGCAC
1 G-AGTTCATTCCCA-GTCTAAG-ATCAGATCGGACCAAGGGTTGCGGCAGCAGGACCGACAGCAC
* ** * * *
35000699 GCAGAGGGGG-CCTGGGTCGATCCCCAACTTGCGCTTTATGCCTTTTCGGCCGGCTCAGCGCCCA
63 GCAGAGGGGGACC--GGACGATCCCCGGCTTGCGCATTATGCCTCTTCGGCCGGCTCAGCGCCCG
* *
35000763 CATGCTAGTTTTGTGCGTTGACTTATGCATACA
126 CATGCTCGTTTTGTGGGTTGACTTATGCATACA
* * * *
35000796 GAGTTCATTCCCAGTCTAAGATCAGA-CTGGA-CAGAGGGTTGCGACAGTAGGATCGACAGCATG
1 GAGTTCATTCCCAGTCTAAGATCAGATC-GGACCA-AGGGTTGCGGCAGCAGGACCGACAGCACG
* * * * * *
35000859 CAGGGGGGGACCAGGACGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGTTGAGCACCCGCA
64 CAGAGGGGGACC-GGACGATCCCCGGCTTGCGCATTATGCCTCTTCGGCCGGCTCAGCGCCCGCA
* ** * * * *
35000924 CT-CTCATTCCGTGGCTTGGCTTAGGCATACG
128 -TGCTCGTTTTGTGGGTTGACTTATGCATACA
* * * * *
35000955 GAGTTCATT-CCATGTCTAAGCACCAGCT-GGACCGAGGGTTGTGGCAGCGGGACCGACAGCACG
1 GAGTTCATTCCCA-GTCTAAG-ATCAGATCGGACCAAGGGTTGCGGCAGCAGGACCGACAGCACG
* * * * *
35001018 CAAAGGGGGACC-GACCGATCCCTGGCTTGCGCATTATGCCTCTTCGGTCAGCTCAGTGCCCGCA
64 CAGAGGGGGACCGGA-CGATCCCCGGCTTGCGCATTATGCCTCTTCGGCCGGCTCAGCGCCCGCA
35001082 TGCTCGTTTTGTGGGTTGACTTATGCATACA
128 TGCTCGTTTTGTGGGTTGACTTATGCATACA
* ** * * *
35001113 GA-TATCATTCCCAGTCTAAGATCGGATCAAACCAAGGGTTGCGGCAGCAGGATCGACAGCATGT
1 GAGT-TCATTCCCAGTCTAAGATCAGATCGGACCAAGGGTTGCGGCAGCAGGACCGACAGCACGC
* * *
35001177 AG-GGGGCGACCAGGTCGATCCTCGGCTTGCGCATTCTGCCTCT
65 AGAGGGG-GACC-GGACGATCCCCGGCTTGCGCATTATGCCTCT
35001220 CCGATCGACT
Statistics
Matches: 442, Mismatches: 116, Indels: 50
0.73 0.19 0.08
Matches are distributed among these distances:
157 15 0.03
158 159 0.36
159 253 0.57
160 15 0.03
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.23
Consensus pattern (158 bp):
GAGTTCATTCCCAGTCTAAGATCAGATCGGACCAAGGGTTGCGGCAGCAGGACCGACAGCACGCA
GAGGGGGACCGGACGATCCCCGGCTTGCGCATTATGCCTCTTCGGCCGGCTCAGCGCCCGCATGC
TCGTTTTGTGGGTTGACTTATGCATACA
Found at i:35001807 original size:26 final size:26
Alignment explanation
Indices: 35001768--35001820 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
35001758 GTTGACTTAG
35001768 GCATACGGACTTCA-TCCCCAGTCTAA
1 GCATACGGACTTCACT-CCCAGTCTAA
* *
35001794 GCATACGGAGTTCACTTCCAGTCTAA
1 GCATACGGACTTCACTCCCAGTCTAA
35001820 G
1 G
35001821 ATCAGATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGACTTCACTCCCAGTCTAA
Found at i:35002226 original size:171 final size:171
Alignment explanation
Indices: 35001925--35002251 Score: 406
Period size: 171 Copynumber: 1.9 Consensus size: 171
35001915 CTGAGCACCC
* * * * **
35001925 GCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCTAGCCGGA
1 GCACGCTCATTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAGCCAAA
* * * * *
35001990 CTGAGGGTTGTGATAGCTGGACTGACAGCAGGATTGACAGTAGGTAGAGAGGGATCGGGCTGATC
66 CCGAGGGTTGTGATAGCTGGACTGACAGCAGGATTGACAGCAGGCAGAGAGGGACCGGCCTGATC
**
35002055 CCCAGCTTGTGCATTATGCCTCTCCGGCTGGCTGAGTGCCA
131 CCCAGCTTACGCATTATGCCTCTCCGGCTGGCTGAGTGCCA
35002096 GCACGCTCATTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAGCCAAA
1 GCACGCTCATTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAGCCAAA
* ** * *** * *
35002161 CCGAGGGTTGTGGTAG-TAGGA-TCGGTAGCGGGATTGGTTGCATGCAGAGGGGGACCGGCCTGA
66 CCGAGGGTTGTGATAGCT-GGACT-GACAGCAGGATTGACAGCAGGCAGAGAGGGACCGGCCTGA
* *
35002224 TCCTCGGCTTACGCATTATGCCTCTCCG
129 TCCCCAGCTTACGCATTATGCCTCTCCG
35002252 ACCGGCCTCT
Statistics
Matches: 130, Mismatches: 24, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
170 2 0.02
171 128 0.98
ACGTcount: A:0.19, C:0.24, G:0.32, T:0.25
Consensus pattern (171 bp):
GCACGCTCATTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAGCCAAA
CCGAGGGTTGTGATAGCTGGACTGACAGCAGGATTGACAGCAGGCAGAGAGGGACCGGCCTGATC
CCCAGCTTACGCATTATGCCTCTCCGGCTGGCTGAGTGCCA
Found at i:35002353 original size:26 final size:26
Alignment explanation
Indices: 35002307--35002384 Score: 122
Period size: 26 Copynumber: 3.0 Consensus size: 26
35002297 GTTGACTTAG
* *
35002307 GCATCCAGAG-TTATCCCCAGTCTAA
1 GCATACAGAGTTTATTCCCAGTCTAA
35002332 GCATACAGAGTTTATTCCCAGTCTAA
1 GCATACAGAGTTTATTCCCAGTCTAA
*
35002358 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACAGAGTTTATTCCCAGTCTAA
35002384 G
1 G
35002385 ATCGGATCGG
Statistics
Matches: 49, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
25 9 0.18
26 40 0.82
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTTATTCCCAGTCTAA
Found at i:35002704 original size:26 final size:25
Alignment explanation
Indices: 35002674--35002725 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 25
35002664 GTTGACTTAG
35002674 GCATAC-GAAGTTCATCCCCAGTCTAA
1 GCATACAG-AGTTCA-CCCCAGTCTAA
*
35002700 GCATACAGAGTTCACTCCAGTCTAA
1 GCATACAGAGTTCACCCCAGTCTAA
35002725 G
1 G
35002726 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
25 11 0.46
26 12 0.50
27 1 0.04
ACGTcount: A:0.31, C:0.29, G:0.17, T:0.23
Consensus pattern (25 bp):
GCATACAGAGTTCACCCCAGTCTAA
Found at i:35002725 original size:25 final size:26
Alignment explanation
Indices: 35002674--35002725 Score: 72
Period size: 25 Copynumber: 2.0 Consensus size: 26
35002664 GTTGACTTAG
35002674 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
35002700 GCATAC-AGAGTTCA-CTCCAGTCTAA
1 GCATACGA-AGTTCATCCCCAGTCTAA
35002725 G
1 G
35002726 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
25 12 0.50
26 12 0.50
ACGTcount: A:0.31, C:0.29, G:0.17, T:0.23
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:35002981 original size:341 final size:342
Alignment explanation
Indices: 35002348--35003041 Score: 869
Period size: 341 Copynumber: 2.0 Consensus size: 342
35002338 AGAGTTTATT
* * * * * **
35002348 CCCAGTCTAAGCATACGGAGTTTATTCCCAGTCTAAGATCGGATCGGATTGACGGTTCGAAAGCA
1 CCCAGTCTAAGCATACAGAGTTCACTCCCAGTCTAAGATCGGACCAGACCGACGGTTCGAAAGCA
** * * * *
35002413 GGATCGGTAGCACGCAGGGGGGATCGGGCCGATCTTCGGCTTGCGCATTCTACCTTTCCGACCAG
66 GGATCGACAGCACGCAGGGGGGATCAGGCCGAGCCTCGGCTTACGCATTCTACCTTTCCGACCAG
** ** *
35002478 CTGAGTGCCCGTAGGCCCGTTTCGTGGGTTAGCTTAGGCATAAGGAGTTCATTTCATGTCTAAGC
131 CTGAGCACCCGTACACCCGTTTCGTGGGTTAGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGC
** * *
35002543 CCCAGCCGGACCGAGGATTGTGGCAGTGGGACCGACAGCACACAAAGGAGGATCGGGTCGATCCC
196 CCCAGCCAAACCGAGGATTGTGGCAGCGGGAACGACAGCACACAAAGGAGGATCGGGTCGATCCC
* * * *
35002608 CGGCTTGCGCATTATTCCTTTTCAACCGGCTCAGTGCCCGCACGCTCGTTTCATGGGTTGACTTA
261 CAGCTTGCGCATTATGCCTTTTCAACCGGCTCAGCGCCCGCACGCTCATTTCATGGGTTGACTTA
35002673 GGCATACGAAGTTCATC
326 GGCATACGAAGTTCATC
* *
35002690 CCCAGTCTAAGCATACAGAGTTCACT-CCAGTCTAAGATCGGACCAGACCGAGGGTTACGACAGC
1 CCCAGTCTAAGCATACAGAGTTCACTCCCAGTCTAAGATCGGACCAGACCGACGGTT-CGAAAGC
* * *
35002754 AGGATCGACAGCACGCA-GGGGGATCAGGCCGAGCCTCGGCTTACGCATTCTGCCTTTCTGACCG
65 AGGATCGACAGCACGCAGGGGGGATCAGGCCGAGCCTCGGCTTACGCATTCTACCTTTCCGACCA
* *
35002818 GCTGAGCACCC-TCACACCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
130 GCTGAGCACCCGT-ACACCCGTTTCGTGGGTTAGCTTAGGCATAAGGAGTTCATTCCATGTCTAA
* * * * *
35002882 GCCCCAGTCAAACTGAGGGTTGTGGCAGCGGGAACGACAGCACGCAAAGGGGGA-CTGGG-CTGA
194 GCCCCAGCCAAACCGAGGATTGTGGCAGCGGGAACGACAGCACACAAAGGAGGATC-GGGTC-GA
* *** * * *
35002945 TCCCCAGCTTGTGCATTATGCCTCTTT-GGTCGGCTCAGCGTCTGCACGCTCATTTCGTGGGTTG
257 TCCCCAGCTTGCGCATTATGCCT-TTTCAACCGGCTCAGCGCCCGCACGCTCATTTCATGGGTTG
* * *
35003009 ACTTATGCATACGGAGTTCATT
321 ACTTAGGCATACGAAGTTCATC
35003031 CCCAGTCTAAG
1 CCCAGTCTAAG
35003042 ATTAGATCGA
Statistics
Matches: 299, Mismatches: 48, Indels: 11
0.84 0.13 0.03
Matches are distributed among these distances:
340 3 0.01
341 249 0.83
342 47 0.16
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (342 bp):
CCCAGTCTAAGCATACAGAGTTCACTCCCAGTCTAAGATCGGACCAGACCGACGGTTCGAAAGCA
GGATCGACAGCACGCAGGGGGGATCAGGCCGAGCCTCGGCTTACGCATTCTACCTTTCCGACCAG
CTGAGCACCCGTACACCCGTTTCGTGGGTTAGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGC
CCCAGCCAAACCGAGGATTGTGGCAGCGGGAACGACAGCACACAAAGGAGGATCGGGTCGATCCC
CAGCTTGCGCATTATGCCTTTTCAACCGGCTCAGCGCCCGCACGCTCATTTCATGGGTTGACTTA
GGCATACGAAGTTCATC
Found at i:35003439 original size:26 final size:26
Alignment explanation
Indices: 35003386--35003440 Score: 76
Period size: 26 Copynumber: 2.1 Consensus size: 26
35003376 TGGGTTGACT
* *
35003386 TAAGCATATGGAGTTCATCCTCAGTC
1 TAAGCATACGGAGTTCATCCTCAATC
35003412 TAAGCATACGGAGTTCATTCC-CAATC
1 TAAGCATACGGAGTTCA-TCCTCAATC
35003438 TAA
1 TAA
35003441 TATCGGATCG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.29
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATCCTCAATC
Found at i:35003745 original size:158 final size:158
Alignment explanation
Indices: 35003450--35003758 Score: 354
Period size: 158 Copynumber: 2.0 Consensus size: 158
35003440 ATATCGGATC
** *
35003450 GGACCGAGGGTGGTGGCAGCAGGATCGACAGCACGTAGGGGGGACCGAGCCGATCCACGGCTTGC
1 GGACCGAGGGTGGTGGCAGCAGGATCGACAGCACACAGGGGGGACCGAGCCGATCCACGGCTTAC
* * * * * * * *
35003515 GCATTCTGCCTCTCTGGTCGACTGAGAGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGG
66 GCATTATGCCTCTCCGGTAGACTCAGAGCCCCCACGCCCATTTCGTGGGTTGACTTAGGCATACG
*
35003580 GACTTCAT-TCCATGTCTAAGCCCCAGTT
131 AACTTCATCTCCA-GTCTAAGCCCCAGTT
* ** * *
35003608 GGACCGAGGGTTGTGGCAGTGGGATCGACAGCACACAGAGGGGGA-CGGGCCGATCCTCGGCTTA
1 GGACCGAGGGTGGTGGCAGCAGGATCGACAGCACACAG-GGGGGACCGAGCCGATCCACGGCTTA
* * * **
35003672 CGTATTATGCCTCTCCGGCTAG-CTCAGTGCCCCCACGCTCATTTCGTGGGTTGACTTTTGCATA
65 CGCATTATGCCTCTCCGG-TAGACTCAGAGCCCCCACGCCCATTTCGTGGGTTGACTTAGGCATA
* *
35003736 CGAAGTTCATCTCTAGTCTAAGC
129 CGAACTTCATCTCCAGTCTAAGC
35003759 AAATGGAGTT
Statistics
Matches: 124, Mismatches: 24, Indels: 6
0.81 0.16 0.04
Matches are distributed among these distances:
158 113 0.91
159 11 0.09
ACGTcount: A:0.18, C:0.28, G:0.32, T:0.23
Consensus pattern (158 bp):
GGACCGAGGGTGGTGGCAGCAGGATCGACAGCACACAGGGGGGACCGAGCCGATCCACGGCTTAC
GCATTATGCCTCTCCGGTAGACTCAGAGCCCCCACGCCCATTTCGTGGGTTGACTTAGGCATACG
AACTTCATCTCCAGTCTAAGCCCCAGTT
Found at i:35003985 original size:342 final size:345
Alignment explanation
Indices: 35003355--35004075 Score: 849
Period size: 342 Copynumber: 2.1 Consensus size: 345
35003345 TGGTCGACTG
* * *
35003355 AGTGCCCGCACGCTCATTTCGTGGGTTGACTTAAGCATATGGAGTTCATCCTCAGTCTAAGCATA
1 AGTGCCCGCACGCTCATTTCGTGGGTTGACTTAAGCATACGAAGTTCATCCTCAGTCTAAGCAAA
* * * * * * * *
35003420 CGGAGTTCATTCCCAATCTAATATCGGATCGGACCGAGGGTGGTGGCAGCAGGATCGACAGCACG
66 CGGAGTTCATTCCCAACCTAAGATCAGACCGGACCGAGGGTGGCGACAACAGGATCGACAGCACA
* * * * *
35003485 TAGGGGGGACCGAGCCGATCCACGGCTTGCGCATTCTGCCTCTCTGGTCGACTGAGAGCCCGCAC
131 AAAGGGGGACCGAGCCGATCCACAGCTTACGCATTCTGCCTCTCAGGTCGACTGAGAGCCCGCAC
* * * ****
35003550 GCCCGTTTCGTGGGTTGGCTTAGGCATAGGGACTTCATTCCATGTCTAAGCCCCAGTTGGACCGA
196 ACCCGTTTCATGGGTTGGCTTAGGCATAGGGACTTCATTCCAAGTCTAAGCCCCACCCAGACCGA
** * * * *
35003615 GGGTTGTGGCAGTGGGATCGACAG-CA-CACAGAGGGGGAC-GGGCCGATCCTCGGCTTACGTAT
261 GGGTTGTGGCAGCAGGACCGACAGACACCACAGAGGGGGACTGGGCCGATCCACGACTTACGCAT
*
35003677 TATGCCTCTCCGG-CTAGCTC
326 TATGCATCTCCGGTC-AGCTC
* **
35003697 AGTGCCCCCACGCTCATTTCGTGGGTTGACTTTTGCATACGAAGTTCAT-CTCTAGTCTAAGCAA
1 AGTGCCCGCACGCTCATTTCGTGGGTTGACTTAAGCATACGAAGTTCATCCTC-AGTCTAAGCAA
* * * *
35003761 ATGGAGTTCATTCCCAGCCTAAGATCAGACCGGACCGAGGGTTGCGACAACAGGATCGGCAGCAC
65 ACGGAGTTCATTCCCAACCTAAGATCAGACCGGACCGAGGGTGGCGACAACAGGATCGACAGCAC
* * * * * *
35003826 AAAAGGGGGACCGGGCTGATCCCCAGCTTACTCATTCTGCCTCTCAGGTCGGCTGAGTGCCCGCA
130 AAAAGGGGGACCGAGCCGATCCACAGCTTACGCATTCTGCCTCTCAGGTCGACTGAGAGCCCGCA
** * * *
35003891 CATTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCAAGTCTTAGCCCCACCCAGACTG
195 CACCCGTTTCATGGGTTGGCTTAGGCATAGGGACTTCATTCCAAGTCTAAGCCCCACCCAGACCG
* ** * *
35003956 AGGGTTGTGGTAGCAGGACCGGTAGCACACCACAGAGGGGGACTGGGTCGATCCACGACTTGCGC
260 AGGGTTGTGGCAGCAGGACCGACAG-ACACCACAGAGGGGGACTGGGCCGATCCACGACTTACGC
* * *
35004021 ATTATGCATTTTCGGTCGGCTC
324 ATTATGCATCTCCGGTCAGCTC
* **
35004043 AGTGCCCGCACACTTGTTTCGTGGGTTGACTTA
1 AGTGCCCGCACGCTCATTTCGTGGGTTGACTTA
35004076 TACATATAGA
Statistics
Matches: 312, Mismatches: 61, Indels: 8
0.82 0.16 0.02
Matches are distributed among these distances:
341 3 0.01
342 233 0.75
344 2 0.01
345 13 0.04
346 60 0.19
347 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (345 bp):
AGTGCCCGCACGCTCATTTCGTGGGTTGACTTAAGCATACGAAGTTCATCCTCAGTCTAAGCAAA
CGGAGTTCATTCCCAACCTAAGATCAGACCGGACCGAGGGTGGCGACAACAGGATCGACAGCACA
AAAGGGGGACCGAGCCGATCCACAGCTTACGCATTCTGCCTCTCAGGTCGACTGAGAGCCCGCAC
ACCCGTTTCATGGGTTGGCTTAGGCATAGGGACTTCATTCCAAGTCTAAGCCCCACCCAGACCGA
GGGTTGTGGCAGCAGGACCGACAGACACCACAGAGGGGGACTGGGCCGATCCACGACTTACGCAT
TATGCATCTCCGGTCAGCTC
Found at i:35004270 original size:26 final size:26
Alignment explanation
Indices: 35004234--35004286 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35004224 GTTGGCTTAG
35004234 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
35004260 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
35004286 G
1 G
35004287 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:35005504 original size:26 final size:26
Alignment explanation
Indices: 35005468--35005520 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
35005458 GTTGACTTAG
*
35005468 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
35005494 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
35005520 G
1 G
35005521 ATTAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:35006231 original size:316 final size:314
Alignment explanation
Indices: 35005494--35006308 Score: 990
Period size: 316 Copynumber: 2.6 Consensus size: 314
35005484 CCCAGTCTAA
* ** * * *
35005494 GCATACGGAGTTCATTCCCAATCTAAGATTAGACCGGACCGAGGGTTGTGGCAGCAGGATCGACA
1 GCATACAGAGTTCATTCCCAATCTAAGATCGGACCGAACCGAGGGTTGCGGCAGCAGGATTGACA
* * * * * * *
35005559 GCACGCAGGGGGGATCGGGCCAATCCCTGGCTTACGCATTCTACCTTTCCGGTCGGTTAAGCGCC
66 GCACGCAGGGGGGATCGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCC
* * *
35005624 CGCACGCCCGTTTCGTAGGTTGGCTTAGGCATAGGGAGTTAATTCCATGTCTAAGCCCCAGTCGA
131 CGCACGCCTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTT-ATTCCATGTCTAAGCCCCAGCCGA
* * *
35005689 ACCGAGGGTTGTGGCAGCGGGACCAACAGCACGCAGAGGGGACTGAGCCGATCCCGGCTTGCGCA
195 ACCAAGGGTTGTGGCAGCGGGACCAACAGCACGCAGAGGGGACTGAGCCGATCCCAGCTTGCCCA
* * * **
35005754 TTATGCCTTTTCGACCGACTCAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAT
260 TTATACCTCTTCGACAGACTCAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAT
* * * * *
35005809 GCATACAAAATTCATTCCCAATCTAAGATCGGACTGAACCGAGGGTTACGGCAGCAGGA-TCAGC
1 GCATACAGAGTTCATTCCCAATCTAAGATCGGACCGAACCGAGGGTTGCGGCAGCAGGATTGA-C
* ** * * *
35005873 AACACGCAGGGGGGATCGGGTCGATCCCCAGCTTGTGCATTCTGCCTCTGCGGTCGGCTGAGCAC
65 AGCACGCAGGGGGGATCGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGC
* * * *
35005938 CCGTATGCCTGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCTGCC-
130 CCGCACGCCTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTT-ATTCCATGTCTAAGCCCCAGCCG
** * * * *
35006002 AGACCAAGGGTTGTGGTGGCGGGACCGATATCACGCAGAGGGGGACTGGGCCGATCCCAGCTTGC
194 A-ACCAAGGGTTGTGGCAGCGGGACCAACAGCACGCAGA-GGGGACTGAGCCGATCCCAGCTTGC
* *
35006067 CCATTATACCTCTTCGATCAG-CTTAGCGCCCACACGTTCGTTTCGTGGGTTGACTTAT
257 CCATTATACCTCTTCGA-CAGACTCAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAT
* * * *
35006125 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGAACCAAGGGTTGCAGTAGCAGGATTGACA
1 GCATACAGAGTTCATTCCCAATCTAAGATCGGACCGAACCGAGGGTTGCGGCAGCAGGATTGACA
* * * **
35006190 GCACGCAGGGGGGACCGGGTTGATCCTTGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCC
66 GCACGCAGGGGGGATCGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCC
* * * *
35006255 CGCACGCTTATTTCATGGGTTGGCTTAAGCCAT-GCGGAGTTATTCCATGTCTAA
131 CGCACGCCTGTTTCGTGGGTTGGCTT-AGGCATAG-GGAGTTATTCCATGTCTAA
35006309 AGCATACGAA
Statistics
Matches: 418, Mismatches: 75, Indels: 13
0.83 0.15 0.03
Matches are distributed among these distances:
314 2 0.00
315 190 0.45
316 211 0.50
317 15 0.04
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (314 bp):
GCATACAGAGTTCATTCCCAATCTAAGATCGGACCGAACCGAGGGTTGCGGCAGCAGGATTGACA
GCACGCAGGGGGGATCGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCC
CGCACGCCTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTATTCCATGTCTAAGCCCCAGCCGAA
CCAAGGGTTGTGGCAGCGGGACCAACAGCACGCAGAGGGGACTGAGCCGATCCCAGCTTGCCCAT
TATACCTCTTCGACAGACTCAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAT
Found at i:35006307 original size:158 final size:157
Alignment explanation
Indices: 35005491--35006308 Score: 551
Period size: 158 Copynumber: 5.2 Consensus size: 157
35005481 ATCCCCAGTC
* * *** * * * *
35005491 TAAGCATACGGAGTTCATTCCCA-ATCTAAGATTAGACCGGACCGAGGGTTGTGGCAGCAGGATC
1 TAAGCATGCGGAGTTCATT-CCATGTCTAAGACCGGACCGAACCAAGGGTTGCGGCAGCAGGACC
* * * * * * * *
35005555 GACAGCACGCAGGGGGGATCGGGCCAATCCCTGGCTTACGCATTCTACCTTTCCGGTCGGTTAAG
65 GACAGCACGCAGGGGGGACCGGGCCGATCCC-GGCTTGCGCATTCTGCCTCTCCGATCGGCTGAG
** *
35005620 CGCCCGCACGCCCGTTTCGTAGGTTGGCT
129 CGCCCGCACGCTTGTTTCGTGGGTTGGCT
* * ** * * * *
35005649 TAGGCATAG-GGAGTTAATTCCATGTCTAAG-CCCCAGTCGAACCGAGGGTTGTGGCAGCGGGAC
1 TAAGCAT-GCGGAGTTCATTCCATGTCTAAGACCGGA-CCGAACCAAGGGTTGCGGCAGCAGGAC
* * * * * * * * * *
35005712 CAACAGCACGCAGAGGGGACTGAGCCGATCCCGGCTTGCGCATTATGCCTTTTCGACCGACTCAG
64 CGACAGCACGCAGGGGGGACCGGGCCGATCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAG
* * *
35005777 CGCCCGTACGCTCGTTTCGTGGGTTGACT
129 CGCCCGCACGCTTGTTTCGTGGGTTGGCT
* * ** * * * * * * *
35005806 TATGCATACAAAATTCATTCCCA-ATCTAAGATCGGACTGAACCGAGGGTTACGGCAGCAGGATC
1 TAAGCATGCGGAGTTCATT-CCATGTCTAAGACCGGACCGAACCAAGGGTTGCGGCAGCAGGACC
* * * * * * *
35005870 -AGCAACACGCAGGGGGGATCGGGTCGATCCCCAGCTTGTGCATTCTGCCTCTGCGGTCGGCTGA
65 GA-CAGCACGCAGGGGGGACCGGGCCGAT-CCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGA
* * * * *
35005934 GCACCCGTATGCCTGTTTTGTGGGTTGGCT
128 GCGCCCGCACGCTTGTTTCGTGGGTTGGCT
* * * * ** *
35005964 TAGGCATAG-GGAGTTCATTCCATGTCTAAGCCCCTG-CC-AGACCAAGGGTTGTGGTGGCGGGA
1 TAAGCAT-GCGGAGTTCATTCCATGTCTAAG-ACCGGACCGA-ACCAAGGGTTGCGGCAGCAGGA
* * * * * * * * * *
35006026 CCGATATCACGCAGAGGGGGACTGGGCCGATCCCAGCTTGCCCATTATACCTCTTCGATCAGCTT
63 CCGACAGCACGCAG-GGGGGACCGGGCCGATCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTG
* *
35006091 AGCGCCCACACG-TTCGTTTCGTGGGTTGACT
127 AGCGCCCGCACGCTT-GTTTCGTGGGTTGGCT
* * * * * * **
35006122 TATGCATACAGAGTTCATTCCCA-GTCTAAGATCGGACCGAACCAAGGGTTGCAGTAGCAGGATT
1 TAAGCATGCGGAGTTCATT-CCATGTCTAAGACCGGACCGAACCAAGGGTTGCGGCAGCAGGACC
** * *
35006186 GACAGCACGCAGGGGGGACCGGGTTGATCCTTGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAG
65 GACAGCACGCAGGGGGGACCGGGCCGATCC-CGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAG
* *
35006251 CGCCCGCACGCTTATTTCATGGGTTGGCT
129 CGCCCGCACGCTTGTTTCGTGGGTTGGCT
35006280 TAAGCCATGCGGAGTT-ATTCCATGTCTAA
1 TAAG-CATGCGGAGTTCATTCCATGTCTAA
35006309 AGCATACGAA
Statistics
Matches: 499, Mismatches: 138, Indels: 46
0.73 0.20 0.07
Matches are distributed among these distances:
156 1 0.00
157 138 0.28
158 329 0.66
159 31 0.06
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (157 bp):
TAAGCATGCGGAGTTCATTCCATGTCTAAGACCGGACCGAACCAAGGGTTGCGGCAGCAGGACCG
ACAGCACGCAGGGGGGACCGGGCCGATCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCG
CCCGCACGCTTGTTTCGTGGGTTGGCT
Found at i:35008353 original size:26 final size:26
Alignment explanation
Indices: 35008312--35008364 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35008302 TCGGTCCGAT
*
35008312 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35008338 CTTAGACT-GGAGATGAACTCCGTATG
1 CTTAGACTGGGA-ATGAACTCCGTATG
35008364 C
1 C
35008365 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 3 0.12
26 22 0.88
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35008721 original size:26 final size:26
Alignment explanation
Indices: 35008692--35008743 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
35008682 CCAGTCCGAT
*
35008692 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
35008718 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
35008744 TCTAAGTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:35008992 original size:380 final size:381
Alignment explanation
Indices: 35008289--35009147 Score: 1014
Period size: 380 Copynumber: 2.3 Consensus size: 381
35008279 GTCTTGCTAT
* *
35008289 CACAACCCTCAGTTCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGAGATGA
1 CACAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGAGATGA
* * * * * *
35008354 ACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGTGCTTAGACGACCGGAGAGGACGT
66 ACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGACGACCGGAGAGGACGT
* * * * * * * *
35008419 TCGAAGTGGCATAATGTGCAAGTCGGGGATCAGCTCGGTCCCCCTATACGTGCTGTCGATCCCAC
131 CCGAAGAGGCATAATGCGCAAGTCGAGGATCAACCCGGTCCCACTATACGTGCTCTCGATCCCAC
* ** *
35008484 TGCTAGTCCTACTGCCATAACCCTCGGTCCGGTTGGGGCTTAGACATGGAATGAACTCCTTATGC
196 TGCCAGTCCTACTGCCATAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGC
* ** ** * *
35008549 CTAAGCTAATTCACGAAACGGGCGTGTGGGCACTAAGCTGACCGGAGAGGCAGAATGCGCAAGCT
261 CTAAGCCAACCCACGAAACAAGCGTGTCGACACTAAGCTGACCGGAGAGGCAGAATGCGCAAGC-
* * * *
35008614 AG-GGATTGGCTCGGTCTACCC-TGCGTGCTACCGATCCTACTGCTGGTCCTACTGC
325 AGAGGATTGGCCCGATCCACCCTTGCGTGCTACCGATCCTACTGCTGGTCCTACTAC
* * * *
35008669 CGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGA
1 CACAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGAGATGA
* * * * *
35008734 ACTCCATATGTCTAAGTTAACCCACGAAACGAGCGTATGGGCGCTCAGTCGACCGGAGAGGCCGT
66 ACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGACGACCGGAGAGGACGT
*
35008799 CC-AGAGAGGCATAATGCGCAAGTCGAGGATCAACCCGGTCCCACTCTACGTGCTACT-GATCCC
131 CCGA-AGAGGCATAATGCGCAAGTCGAGGATCAACCCGGTCCCACTATACGTGCT-CTCGATCCC
* * * * * *
35008862 GCTGCCGGTCTTGA-TGCCATAACCCTTGGTCTGACTGGGGCTTAGACATGGAATGAACTTCGTA
194 ACTGCCAGTCCT-ACTGCCATAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTA
* * * *
35008926 TGCCTAAGCCAACCCATGAAACAAGCGTG-CGACTGCTCAG-TCGACCGGAGAGGCAGAATTCGC
258 TGCCTAAGCCAACCCACGAAACAAGCGTGTCGAC-ACTAAGCT-GACCGGAGAGGCAGAATGCGC
* * ** *
35008989 AAGCCGAGGATTGGCCCGATCCCCCCTTGCGTGCTGTCGATCCTACTGCTGGTCTTACTAC
321 AAGCAGAGGATTGGCCCGATCCACCCTTGCGTGCTACCGATCCTACTGCTGGTCCTACTAC
* * * * *
35009050 CACAACCTTCAGTCCGGTACGATCTTAGACTGGGAATGAACTCCATATGCTTAAACAT-GAAATG
1 CACAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC-TGGAGATG
* ** *
35009114 AACTCCGTATGCCTAAACCAACCCACAAAACGAG
65 AACTCCATATGCCTAAGTCAACCCACGAAACGAG
35009148 TGTGTGGGCA
Statistics
Matches: 400, Mismatches: 71, Indels: 15
0.82 0.15 0.03
Matches are distributed among these distances:
379 5 0.01
380 281 0.70
381 113 0.28
382 1 0.00
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.22
Consensus pattern (381 bp):
CACAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGAGATGA
ACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGACGACCGGAGAGGACGT
CCGAAGAGGCATAATGCGCAAGTCGAGGATCAACCCGGTCCCACTATACGTGCTCTCGATCCCAC
TGCCAGTCCTACTGCCATAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGC
CTAAGCCAACCCACGAAACAAGCGTGTCGACACTAAGCTGACCGGAGAGGCAGAATGCGCAAGCA
GAGGATTGGCCCGATCCACCCTTGCGTGCTACCGATCCTACTGCTGGTCCTACTAC
Found at i:35010260 original size:26 final size:26
Alignment explanation
Indices: 35010231--35010283 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
35010221 CCGATCCGAT
35010231 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
35010257 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35010283 C
1 C
35010284 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35011344 original size:159 final size:158
Alignment explanation
Indices: 35010984--35011581 Score: 532
Period size: 158 Copynumber: 3.8 Consensus size: 158
35010974 TCCGTATGTG
* *
35010984 TAGACATGGAATGAACTCCGTATGCCTAGGCCAACCCACGAAACGAG-GCTGCGGGCGCTCAGTC
1 TAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCG-TGCGGGCGCTCAGTC
* * * * ** * * **
35011048 GGTTGGAGAGGCAGAATGCGCAAGTCGGGGATTGGCCCGATCAACCCTGCATGCTGTCGAACCTG
65 GATCGGAGAGGCAGAATGCGCAAGTCGGGGATTGACCCGGTCCCCCCTACGTGCTGTCGGTCCTG
* * * **
35011113 -TGCCGC-ACCTCTCAGTCCAGTCT-GATCT
130 CTGCCACAACCT-TCGGTCTAGT-TGGGGCT
* * * * ** * * *
35011141 TAGAC-TGGGAATAAACTTCGTATGCATAAGTTAACCCACGAAACGAGCGTGCGAGCACTGAGTC
1 TAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGTC
* * * *
35011205 GATCGAAGAGGCATAATGCACAAGCCGGGGATTGACCCGGTCCCCCTCTACGTGCTGTCGGTCCT
65 GATCGGAGAGGCAGAATGCGCAAGTCGGGGATTGACCCGGTCCCCC-CTACGTGCTGTCGGTCCT
*
35011270 GCTGCCACAACCTTCGGTCTGGTTGGGGCT
129 GCTGCCACAACCTTCGGTCTAGTTGGGGCT
* * *
35011300 TAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCACAGTGG
1 TAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCG
* ** * * *
35011365 ACCGGAGAGATAGAATGCGTAAGTCGGGGATCGACCCGGTCCCCCCTACGTGTTG-CAGGT-CTA
66 ATCGGAGAGGCAGAATGCGCAAGTCGGGGATTGACCCGGTCCCCCCTACGTGCTGTC-GGTCCT-
* * **
35011428 GCTGCCACAACCCTCGGT-TCGACGGGGACT
129 GCTGCCACAACCTTCGGTCTAGTTGGGG-CT
* * * * * *
35011458 TCGACATGGAATGAACTCCCTATGCCTCAGCCAACCCATGGAAA-GGGCGTACGGGTGCTCAG-C
1 TAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA-CGAAACGAGCGTGCGGGCGCTCAGTC
* * * * *
35011521 TGATCGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTTACATGCTGTCG
65 -GATCGGAGAGGCAGAATGCGCAAGTCGGGGATTGACCCGGTCCCCCC-TACGTGCTGTCG
35011582 ATCTTGTTGC
Statistics
Matches: 358, Mismatches: 69, Indels: 26
0.79 0.15 0.06
Matches are distributed among these distances:
156 1 0.00
157 96 0.27
158 141 0.39
159 114 0.32
160 6 0.02
ACGTcount: A:0.23, C:0.29, G:0.30, T:0.19
Consensus pattern (158 bp):
TAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCG
ATCGGAGAGGCAGAATGCGCAAGTCGGGGATTGACCCGGTCCCCCCTACGTGCTGTCGGTCCTGC
TGCCACAACCTTCGGTCTAGTTGGGGCT
Found at i:35011660 original size:26 final size:26
Alignment explanation
Indices: 35011616--35011666 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
35011606 CGATCCGATC
*
35011616 TTAGACTGGGAATGGACTTCATATGG
1 TTAGACTGGGAATGAACTTCATATGG
* *
35011642 TTAGACTGGGGATGAACTTCGTATG
1 TTAGACTGGGAATGAACTTCATATG
35011667 CCTAAGTCAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.12, G:0.31, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTTCATATGG
Found at i:35011988 original size:26 final size:26
Alignment explanation
Indices: 35011952--35012004 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
35011942 CTGATCTGAT
*
35011952 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
35011978 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35012004 C
1 C
35012005 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35012076 original size:337 final size:341
Alignment explanation
Indices: 35011432--35012234 Score: 972
Period size: 337 Copynumber: 2.4 Consensus size: 341
35011422 GGTCTAGCTG
* * *
35011432 CCACAACCCTCGGTTCGAC-GGGGACTTCGACATGGAATGAACTCCCTATGCCTCAGCCAACCCA
1 CCACAACCCTCGGTCCGACTGGGG-CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
* * * * * * *
35011496 TGGAAA-GGGCGTACGGGTGCTCAGCTGATCGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCC
65 T-GAAACGGGCGTACGGGCGCTCAGCCGATCGAAGAGGCAGAATGCACAAGCCGAGGATCGACCC
* *
35011560 GGTCCCCCCTTACATGCTGTCGATCTTGTTGCCGCAACCCTCGATCCGATCCGATCTTAGACTGG
129 GGTCCCCCCTTACATGCTGTCGA-CTTGCTACCG--ACCCTCGATCCGATCCGATCTTAGACTGG
* * * * *
35011625 GAATGGACTTCATATGGTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCATGAAATGAG
191 GAATGAACTCCATATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAG
* ** *
35011690 CATGCGGGCGTTGAGCCGGTCGAAAAGGCATAATGCGTAAGTCGAGGATCGAACCGATCCCCTTC
256 CATGCGGGCGCTGAGCCGACCGAAAAGGCATAATGCATAAGTCGAGGATCGAACCGATCCCCTTC
* * *
35011755 TGCATGCTGTTGTTCCCGCCA
321 TGCATGCTGCTGGTCCCACCA
* *
35011776 CCACAACCCTCGGTCCGACTTGAGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAT
1 CCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAT
* * *
35011841 GAAACGGGCGTATGGGCGTTCAGCCGA-CAGAAGAGGCAGAATGCACAAGCCGAGGATCGACTCG
66 GAAACGGGCGTACGGGCGCTCAGCCGATC-GAAGAGGCAGAATGCACAAGCCGAGGATCGACCCG
* * * * * * * *
35011905 GTCCCCCC-TGCGTGTTGTCG-CTT-CTACTG-CCCTCGGTCTGATCTGATCTTAGATTGGGAAT
130 GTCCCCCCTTACATGCTGTCGACTTGCTACCGACCCTCGATCCGATCCGATCTTAGACTGGGAAT
* *
35011966 GAACTCCGTATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTG
195 GAACTCCATATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCATG
* ** * *
35012031 CGGGCGCTGAGCCGACCGGAGGGGCATAATGCATAAGTTGAGGATCGAACCGGTCCCCTTCTGCA
260 CGGGCGCTGAGCCGACCGAAAAGGCATAATGCATAAGTCGAGGATCGAACCGATCCCCTTCTGCA
* **
35012096 TGTTGCTGGTCCCACTG
325 TGCTGCTGGTCCCACCA
* * *
35012113 CCACAACCCTCAGTCCCACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
1 CCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAT
* * ** * * * * *
35012178 GAAACAGGCGTGCGATCGCTAACCCGATCGAAGAGGCATAATACACAAACCGAGGAT
66 GAAACGGGCGTACGGGCGCTCAGCCGATCGAAGAGGCAGAATGCACAAGCCGAGGAT
35012235 TGGCTCGATC
Statistics
Matches: 392, Mismatches: 63, Indels: 15
0.83 0.13 0.03
Matches are distributed among these distances:
337 257 0.66
338 1 0.00
340 3 0.01
341 3 0.01
343 14 0.04
344 112 0.29
345 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (341 bp):
CCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAT
GAAACGGGCGTACGGGCGCTCAGCCGATCGAAGAGGCAGAATGCACAAGCCGAGGATCGACCCGG
TCCCCCCTTACATGCTGTCGACTTGCTACCGACCCTCGATCCGATCCGATCTTAGACTGGGAATG
AACTCCATATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCATGC
GGGCGCTGAGCCGACCGAAAAGGCATAATGCATAAGTCGAGGATCGAACCGATCCCCTTCTGCAT
GCTGCTGGTCCCACCA
Found at i:35012406 original size:159 final size:160
Alignment explanation
Indices: 35011977--35012407 Score: 404
Period size: 159 Copynumber: 2.7 Consensus size: 160
35011967 AACTCCGTAT
* * * * * * *
35011977 GCTTAGAC-TGGGGATGAACTTCGTATGCCTAAGTCAACCCACGAAAC-GAGCGTGCGGGCGCTG
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAG-GCGTACGAGCGCTA
* * * * * * * *** * * *
35012040 AGCCGACCGGAGGGGCATAATGCATAAGTTGAGGATCGAACCGGT-CCCCTTCTGCATGTTGCTG
64 ACCCGATCGAAGAGGCAGAATACACAAACCGAGGATCGACCCGGTCCCCCTTCTGCATGCTGCCG
*
35012104 GTCCCACTGCCACAACCCTCAGTCCCACTGGG
129 GTCCCACTGCCACAACCCTCAGTCCCACGGGG
* *
35012136 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGCGTGCGATCGCTAAC
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGCGTACGAGCGCTAAC
* * * * * *
35012201 CCGATCGAAGAGGCATAATACACAAACCGAGGATTGGCTCGATCCCCCTT-TGCGTGCTGCCGGT
66 CCGATCGAAGAGGCAGAATACACAAACCGAGGATCGACCCGGTCCCCCTTCTGCATGCTGCCGGT
* * **
35012265 CCCGCTGCCACAACCCTCGGTCCGGCGGGG
131 CCCACTGCCACAACCCTCAGTCCCACGGGG
* *
35012295 GCTTAGACATGGAATGAACTCCCTATGCCTCAGCCAACCCACGAAA-AGGGCGTACGAGCGCTCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACA-GGCGTACGAGCGCTAA
*** * * ** * *
35012359 GTTGATCGAAGAGGTAGAATGCGTAAGCCGGGGATCGACCCGGTCCCCC
65 CCCGATCGAAGAGGCAGAATACACAAACCGAGGATCGACCCGGTCCCCC
35012408 CTACATGCTG
Statistics
Matches: 221, Mismatches: 47, Indels: 8
0.80 0.17 0.03
Matches are distributed among these distances:
158 1 0.00
159 212 0.96
160 8 0.04
ACGTcount: A:0.24, C:0.31, G:0.28, T:0.18
Consensus pattern (160 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGCGTACGAGCGCTAAC
CCGATCGAAGAGGCAGAATACACAAACCGAGGATCGACCCGGTCCCCCTTCTGCATGCTGCCGGT
CCCACTGCCACAACCCTCAGTCCCACGGGG
Found at i:35012490 original size:26 final size:26
Alignment explanation
Indices: 35012454--35012504 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
35012444 CCGATCCGAT
*
35012454 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
*
35012480 CTTAGACTGGGGATGAACTTCGTAT
1 CTTAGACTGGGAATGAACTTCGTAT
35012505 TCCTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.14, G:0.27, T:0.33
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:35012625 original size:502 final size:496
Alignment explanation
Indices: 35011776--35013051 Score: 1456
Period size: 502 Copynumber: 2.5 Consensus size: 496
35011766 GTTCCCGCCA
** *
35011776 CCACAACCCTCGGTCCGACTTGAGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAT
1 CCACAACCCTCGGTCCGACGGGAGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
* * * * *
35011841 GAAACGGGCGTATGGGCGTTCAGCCGACAGAAGAGGCAGAATGCACAAGCCGAGGATCGACTCGG
66 GAAAAGGGCGTACGAGCGCTCAGCCGACAGAAGAGGCAGAATGCACAAGCCGAGGATCGACCCGG
* * ** * * *
35011906 TCCCCCCTGCGTGTTGTCGCTTCTACTGCCCTCGGTCTGATCTGATCTTAGATTGGGAATGAACT
131 TCCCCCCTACGTGTTGTCGCTTCCACAACCCTCGATCCGATCCGATCTTAGATTGGGAATGAACT
35011971 CCGTATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
196 CCGTATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
* * *
35012036 GCTGAGCCGACCGGAGGGGCATAATGCATAAGTTGAGGATCGAACCGGTCCCCTTCTGCATGTTG
261 GCTGAGCCGACCGGAAGGGCATAATGCATAAGTCGAGGATCGAACCGGTCCCCTTCTGCATGCTG
35012101 CTGGTCCCACTGCCACAACCCTCAGTCCCACTGGGGCTTAGACATGGAATGAACTCCCTATGCCT
326 CTGGTCCCACTGCCACAACCCTCAGTCCCACTGGGGCTTAGACATGGAATGAACTCCCTATGCCT
35012166 AAGCCAACCCACGAAACAGGCGTGCGATCGCTAACCCGATCGAAGAGGCATAATACACAAACCGA
391 AAGCCAACCCACGAAACAGGCGTGCGATCGCTAACCCGATCGAAGAGGCATAATACACAAACCGA
35012231 GGATTGGCTCGATCCCCCTTTGCGTGCTGCCGGTCCCGCTG
456 GGATTGGCTCGATCCCCCTTTGCGTGCTGCCGGTCCCGCTG
* * *
35012272 CCACAACCCTCGGTCCGGCGGGGGCTTAGACATGGAATGAACTCCCTATGCCTCAGCCAACCCAC
1 CCACAACCCTCGGTCCGACGGGAGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
** * ** *
35012337 GAAAAGGGCGTACGAGCGCTCAGTTGATC-GAAGAGGTAGAATGCGTAAGCCGGGGATCGACCCG
66 GAAAAGGGCGTACGAGCGCTCAGCCGA-CAGAAGAGGCAGAATGCACAAGCCGAGGATCGACCCG
*
35012401 GTCCCCCCTACATGCTGTTGATCTTG-TTGCCGCAACCCTCGATCCGATCCGATCTTAGATTGGG
130 GTCCCCCCTAC--G-TGTTG-TC--GCTT-CCACAACCCTCGATCCGATCCGATCTTAGATTGGG
* * * *
35012465 AATGAACTTCGTATGCTTAGACTGGGGATGAACTTCGTATTCCTAAGTCAACCCACGAAATGAGT
188 AATGAACTCCGTATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGC
** *
35012530 GTGCGGGCGCTGAGCCGGTCGGAAGGGCATAATGCATAAGTCGAGGATCGAACCGGTCCCTTTCT
253 GTGCGGGCGCTGAGCCGACCGGAAGGGCATAATGCATAAGTCGAGGATCGAACCGGTCCCCTTCT
** * *
35012595 GCATGCTGCTGGTCCCGGTGCCATAACCCTCGGTCCCACTGGGGCTTAGACATGGAATGAACTCC
318 GCATGCTGCTGGTCCCACTGCCACAACCCTCAGTCCCACTGGGGCTTAGACATGGAATGAACTCC
* ** * ** * * *
35012660 CTATGCCTAAGCCAACCCACGAAAC-GGTCATGCGGGCGCTCAGTCGATCGAAAAGGCAGAATGC
383 CTATGCCTAAGCCAACCCACGAAACAGG-CGTGCGATCGCTAACCCGATCGAAGAGGCATAATAC
** * * * * * * ** *
35012724 GTAAGCCGA-GATCGGCCCGATCCCCCCTTACGTGCTGTCAATCCTGCTG
447 ACAAACCGAGGATTGGCTCGATCCCCCTTTGCGTGCTGCCGGTCCCGCTG
* * *** * * * *** *
35012773 TCGCAA--CTCGGGATGAACTTCGTATGCTTAGAC-TGGGGATGAACTTTGTATGCCTAAGTCAA
1 CCACAACCCTCGGTCCG-AC--GGGA-GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAA
* * * * * * * * *
35012835 CCCATGAAACGAGCGTACGGGCGCTGAGCAGGAC-GGAGAGGCATAATGTACAAGCCGAGGATCG
61 CCCACGAAAAGGGCGTACGAGCGCTCAGC-CGACAGAAGAGGCAGAATGCACAAGCCGAGGATCG
* * * *
35012899 ACCTGGTCCCCCTCTGCGTGCTGTCGGTCCCGCTGCCACAACCCTCGATCCGATCTGATCTTAGA
125 ACCCGGTCCCCC-CTACGTG-T-T--GT--CGCTTCCACAACCCTCGATCCGATCCGATCTTAGA
* * * *
35012964 TT-GGAATGAACTCTGTATGCTTAGACTGGGGATGAA-GTCTGTATGCCTATGTCAACCCACAAA
183 TTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTTC-GTATGCCTAAGTCAACCCACGAA
* * *
35013027 ACGAGCATGCAGGCGCTCAGCCGAC
247 ACGAGCGTGCGGGCGCTGAGCCGAC
35013052 TAGAGAGGCA
Statistics
Matches: 650, Mismatches: 106, Indels: 41
0.82 0.13 0.05
Matches are distributed among these distances:
496 120 0.18
497 1 0.00
498 1 0.00
499 11 0.02
500 3 0.00
501 42 0.06
502 274 0.42
503 158 0.24
504 37 0.06
505 2 0.00
506 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.21
Consensus pattern (496 bp):
CCACAACCCTCGGTCCGACGGGAGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
GAAAAGGGCGTACGAGCGCTCAGCCGACAGAAGAGGCAGAATGCACAAGCCGAGGATCGACCCGG
TCCCCCCTACGTGTTGTCGCTTCCACAACCCTCGATCCGATCCGATCTTAGATTGGGAATGAACT
CCGTATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
GCTGAGCCGACCGGAAGGGCATAATGCATAAGTCGAGGATCGAACCGGTCCCCTTCTGCATGCTG
CTGGTCCCACTGCCACAACCCTCAGTCCCACTGGGGCTTAGACATGGAATGAACTCCCTATGCCT
AAGCCAACCCACGAAACAGGCGTGCGATCGCTAACCCGATCGAAGAGGCATAATACACAAACCGA
GGATTGGCTCGATCCCCCTTTGCGTGCTGCCGGTCCCGCTG
Done.