Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 386 of 402
Found at i:35012986 original size:25 final size:26
Alignment explanation
Indices: 35012958--35013009 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
35012948 CCGATCTGAT
*
35012958 CTTAGA-TTGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
* *
35012983 CTTAGACTGGGGATGAAGTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
35013009 C
1 C
35013010 CTATGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 6 0.26
26 17 0.74
ACGTcount: A:0.25, C:0.13, G:0.29, T:0.33
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:35013715 original size:26 final size:26
Alignment explanation
Indices: 35013677--35013729 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35013667 GGCTCAAAAT
35013677 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
35013703 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
35013729 C
1 C
35013730 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35016826 original size:26 final size:26
Alignment explanation
Indices: 35016786--35016838 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35016776 GGCTCAAAAT
*
35016786 CTTAGACTGGAAATGAACTCTGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
35016812 CTTAGACATGG-AATGAACTCCGTATG
1 CTTAGAC-TGGAAATGAACTCCGTATG
35016838 C
1 C
35016839 GTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:35017328 original size:26 final size:26
Alignment explanation
Indices: 35017299--35017368 Score: 95
Period size: 26 Copynumber: 2.7 Consensus size: 26
35017289 TACACTGGGA
*
35017299 ATGAACTCCGTATGCCTAGACTAGGG
1 ATGAACTCAGTATGCCTAGACTAGGG
* * *
35017325 ATGAACTCTGTATGCTTAGACTGGGG
1 ATGAACTCAGTATGCCTAGACTAGGG
*
35017351 ATGAACTCAGTTTGCCTA
1 ATGAACTCAGTATGCCTA
35017369 TGTCAACCCA
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 38 1.00
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.29
Consensus pattern (26 bp):
ATGAACTCAGTATGCCTAGACTAGGG
Found at i:35018403 original size:25 final size:26
Alignment explanation
Indices: 35018360--35018410 Score: 86
Period size: 25 Copynumber: 2.0 Consensus size: 26
35018350 CCGATCCAAT
*
35018360 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCAGTATG
35018386 CTTAGACT-GGAATGAACTCAGTATG
1 CTTAGACTGGGAATGAACTCAGTATG
35018411 TCTAAGCCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 16 0.67
26 8 0.33
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCAGTATG
Found at i:35018888 original size:26 final size:26
Alignment explanation
Indices: 35018847--35018899 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
35018837 CTTATCTGAT
*
35018847 CTTAGATTAGGAATGAACTTCGTATG
1 CTTAGATTAGGAATGAACTCCGTATG
* *
35018873 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGATTAGGAATGAACTCCGTATG
35018899 C
1 C
35018900 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGATTAGGAATGAACTCCGTATG
Found at i:35020203 original size:12 final size:12
Alignment explanation
Indices: 35020186--35020216 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
35020176 CCCCTCTATG
35020186 TGCTACCGATCC
1 TGCTACCGATCC
*
35020198 TGCTACCGGTCC
1 TGCTACCGATCC
35020210 TGCTACC
1 TGCTACC
35020217 ACAACCCTCA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.13, C:0.42, G:0.19, T:0.26
Consensus pattern (12 bp):
TGCTACCGATCC
Found at i:35020484 original size:26 final size:26
Alignment explanation
Indices: 35020409--35020486 Score: 113
Period size: 26 Copynumber: 3.0 Consensus size: 26
35020399 CGATCTGATA
*
35020409 TTAGACTGGGAATGAACTCCATATGC
1 TTAGACTGGGAATGAACTCCGTATGC
*
35020435 TTAGAGTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
*
35020461 TTAGACAT-GGAATGAACTCTGTATGC
1 TTAGAC-TGGGAATGAACTCCGTATGC
35020487 CTAAGCCAAC
Statistics
Matches: 47, Mismatches: 4, Indels: 2
0.89 0.08 0.04
Matches are distributed among these distances:
26 46 0.98
27 1 0.02
ACGTcount: A:0.29, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:35020849 original size:159 final size:154
Alignment explanation
Indices: 35020459--35020862 Score: 365
Period size: 159 Copynumber: 2.6 Consensus size: 154
35020449 AACTCCGTAT
* * *
35020459 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACTA-GC-AAGTGGGTGCTC
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA-TAGGCGAA-CGGGCGCTC
* * * * **
35020522 AG-TTGGCTGGAGAGGCAGAATGCCCAA-GTCAGGGATCGCCCGATCCCCCCTGTGCTGTCAATC
64 AGCCT-GC-CGAGAGGCAAAATGCACAAGGTCAGGGATCGCCCGATCCCCCCTGTGCTACCAATC
35020585 CTACTACCACAACCCTCGTCCGGTCTGA
127 CTACTACCACAACCCTCGTCCGGTCTGA
* * * * * * *
35020613 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAGCCCACGAAA-CGAGCGTACGGGCACTG
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATAG-GCGAACGGGCGCTC
** * * * *
35020676 AGCCAACCGAAGAGGCATAATGCGCAAGGTGA-GGATCAGCCCGATCCCCCTCTACGTGCTACCG
64 AGCCTGCCG-AGAGGCAAAATGCACAAGGTCAGGGATC-GCCCGATCCCCC-CT--GTGCTACCA
* * *
35020740 GTCCTGCTACCACAACCCTCGGTCCGG-CTGGG
124 ATCCTACTACCACAACCCTC-GTCCGGTCT-GA
* * * *
35020772 GCTTAGACATGGAATGAAGTCCCTATGCATAAGCCAACCCATGAAATAGGCGAACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATAGGCGAACGGGCGCTCAG
35020837 CCTGCCAGAGAGGCAAAATGCACAAG
66 CCTGCC-GAGAGGCAAAATGCACAAG
35020863 CCGTGCATCG
Statistics
Matches: 196, Mismatches: 38, Indels: 27
0.75 0.15 0.10
Matches are distributed among these distances:
153 2 0.01
154 70 0.36
155 16 0.08
156 2 0.01
158 26 0.13
159 77 0.39
160 3 0.02
ACGTcount: A:0.26, C:0.30, G:0.26, T:0.18
Consensus pattern (154 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATAGGCGAACGGGCGCTCAG
CCTGCCGAGAGGCAAAATGCACAAGGTCAGGGATCGCCCGATCCCCCCTGTGCTACCAATCCTAC
TACCACAACCCTCGTCCGGTCTGA
Found at i:35020960 original size:26 final size:26
Alignment explanation
Indices: 35020931--35020983 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
35020921 CTGGTTTGAT
*
35020931 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
35020957 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35020983 C
1 C
35020984 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35021836 original size:26 final size:26
Alignment explanation
Indices: 35021800--35021852 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
35021790 CTGATCTGAT
* *
35021800 CTTAGGCTGGGAATGAACTCCATATG
1 CTTAGACTGGGAACGAACTCCATATG
* *
35021826 CTTAGACTGGGGACGAACTCCGTATG
1 CTTAGACTGGGAACGAACTCCATATG
35021852 C
1 C
35021853 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAACGAACTCCATATG
Found at i:35022570 original size:26 final size:26
Alignment explanation
Indices: 35022532--35022584 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35022522 GGCTCAAAAT
*
35022532 CTTAGACTGGGAATGACCTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35022558 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
35022584 C
1 C
35022585 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35022990 original size:158 final size:158
Alignment explanation
Indices: 35022557--35023083 Score: 447
Period size: 158 Copynumber: 3.3 Consensus size: 158
35022547 ACCTCCGTAT
** *
35022557 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTATGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
* * * * *
35022622 CCGG-CTGGAGAGGCAGAATACGCAAGCCAGGGACTGGCCCGGTCCCCCCTGCGTGCTATCGATC
66 CCGGTC-GGAGAGGCAAAATGCGCAAGCCAGGGATTGGCCCGGTCTCCCCTGCGTGCTGTCGATC
** * * * *
35022686 TTGCTGTCGCAACCCTCAGTACGGTCTGA
130 CCGCTGCCACAACCCTCAGTACCGACTGA
* * * * * *
35022715 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGTTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCA
* * * ** * * * * *
35022779 GCC-GTCGGAGAGGCATAATGCGTAAGTCAATGATCGACTCGATCTCCCTCTGCGTGCTGTCGGT
65 GCCGGTCGGAGAGGCAAAATGCGCAAGCCAGGGATTGGCCCGGTCTCCC-CTGCGTGCTGTCGAT
* *
35022843 CCCGCTGCCACAACCCTCGGT-CCGACTGGG
129 CCCGCTGCCACAACCCTCAGTACCGACT-GA
* * ** *
35022873 GCTTAGACATGGAATGAACTCCCTATGCTTAAGCCAACCCATAAAACGGGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
* * * * *
35022938 CCGGTCGGAGAGGCAAAATGTGCAAGCCGGGGATTGGCGCGGTCTTCCCTGCGAGCTG-CTGATC
66 CCGGTCGGAGAGGCAAAATGCGCAAGCCAGGGATTGGCCCGGTCTCCCCTGCGTGCTGTC-GATC
** * ** * *
35023002 TTGCTGTCACAACCCTTGGT-CCAATTTGA
130 CCGCTGCCACAACCCTCAGTACCGA-CTGA
* * * * * *
35023031 TCTTAGAC-TGGGGATGAACTCCATATACCTAAGTCAACCCACAAAACGAGCGT
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGT
35023084 ACAGGCACTC
Statistics
Matches: 289, Mismatches: 71, Indels: 18
0.76 0.19 0.05
Matches are distributed among these distances:
157 38 0.13
158 216 0.75
159 35 0.12
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
CCGGTCGGAGAGGCAAAATGCGCAAGCCAGGGATTGGCCCGGTCTCCCCTGCGTGCTGTCGATCC
CGCTGCCACAACCCTCAGTACCGACTGA
Found at i:35023719 original size:158 final size:157
Alignment explanation
Indices: 35023251--35023740 Score: 449
Period size: 158 Copynumber: 3.1 Consensus size: 157
35023241 GCTTAGGCAT
* *
35023251 GGAATGAACTCCGTCTGCCTAAGCCAACCCACGAAAC-GAGCATGCGGGCACTCAACCGGTCGGA
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAG-GCATGCGGGCACTCAGCCGGTCGGA
* * * * * * * *
35023315 GAGGTAGAATGCACAAGTCGAGGACCGA-GCTGAT-CCCCCTACGTGCTATCGATCCTGCTG-TC
65 GAGGTAGAATGCGCAAGTCGGGGATCGACCCAG-TCCCCCCT-GGTGCTGTCGATCCAGCTGCT-
* *
35023377 GCAACCCTTGGTCTGGTCCGATCTTAGACTG
127 GCAACCCTCGGTCTGATCCGATCTTAGACTG
* * * * * * * *
35023408 GGAATGAACTCTGTATTCCTAAGTCAACCCATGAAACAAGCATTCGGGCGCTGAGCCGGTCGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAGGCATGCGGGCACTCAGCCGGTCGGAG
* * * * * * * **
35023473 AGGCATAATACGCAAGTCAGGGATCGACCGA-TCCCCCTCTAGGTGCTG-CCAGTCCAGCTACCA
66 AGGTAGAATGCGCAAGTCGGGGATCGACCCAGTCCCCC-CT-GGTGCTGTCGA-TCCAGCTGCTG
* * * **
35023536 CAACCCTCGGTC-CAGCTGGGGCTTAGACAT-
128 CAACCCTCGGTCTGATC-CGATCTTAGAC-TG
* * *
35023566 GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGCATGCGGGCACTCAGCCAGCCGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAGGCATGCGGGCACTCAGCCGGTCGGAG
* * *
35023631 AGGTAGAATGTGGAAGAT-GGGGTTCGACCCAGTCCCCCCTGTGTGCTGTCGATCCAGCTGCTGC
66 AGGTAGAATGCGCAAG-TCGGGGATCGACCCAGTCCCCCCTG-GTGCTGTCGATCCAGCTGCTGC
35023695 AACCCTCGGTCTGATCCGATCTTAGACTG
129 AACCCTCGGTCTGATCCGATCTTAGACTG
*
35023724 GGAATAAACTCCGTATG
1 GGAATGAACTCCGTATG
35023741 TTTAGACTGG
Statistics
Matches: 255, Mismatches: 64, Indels: 27
0.74 0.18 0.08
Matches are distributed among these distances:
156 1 0.00
157 83 0.33
158 159 0.62
159 12 0.05
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (157 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAGGCATGCGGGCACTCAGCCGGTCGGAG
AGGTAGAATGCGCAAGTCGGGGATCGACCCAGTCCCCCCTGGTGCTGTCGATCCAGCTGCTGCAA
CCCTCGGTCTGATCCGATCTTAGACTG
Found at i:35023766 original size:26 final size:26
Alignment explanation
Indices: 35023716--35023766 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
35023706 TGATCCGATC
*
35023716 TTAGACTGGGAATAAACTCCGTATGT
1 TTAGACTGGGAATAAACTCCATATGT
* * *
35023742 TTAGACTGGGGATGAACTCTATATG
1 TTAGACTGGGAATAAACTCCATATG
35023767 CCTAAGTCAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.29, C:0.14, G:0.25, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATAAACTCCATATGT
Found at i:35024110 original size:26 final size:26
Alignment explanation
Indices: 35024081--35024133 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35024071 CCGATCCGAT
35024081 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
35024107 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCCGTATG
35024133 C
1 C
35024134 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:35024375 original size:158 final size:158
Alignment explanation
Indices: 35024179--35024600 Score: 405
Period size: 158 Copynumber: 2.7 Consensus size: 158
35024169 AACCGATCGG
* * * *
35024179 AGAGGCAGAATGTGCAAGTCAGG-GATCGGCCTGGCCCCCCCTGTGT-CTTGTCGATCCTACTGC
1 AGAGGCAGAATGCGCAAGTC-GGAGATCGGCCCGTCCCCCCCTGCGTGC-TGTCGATCCTACTGC
** *
35024242 CACAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATC
64 CACAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCA-C
* ** *
35024307 -AAA-TGAGCATTTAGGCACTGAGCCA-CCGA
128 GAAACGGA-CATGCAGGCACTCAGCCAGCCGA
* * * **
35024336 AGAGGCATAATGCGCAAGTCGGAGATCGGCCCGATCCCCCTCTGCGTGCTGTCGGTCCCGCTGCC
1 AGAGGCAGAATGCGCAAGTCGGAGATCGGCCCG-TCCCCCCCTGCGTGCTGTCGATCCTACTGCC
* * * **
35024401 ACAACCCTCAATC-CGACTGGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCAC
65 ACAACCCTCAGTCTGGTCT-GATCTTAGAC-TGGGAATGAACTCCCTATGCCTAAGCCAACCCAC
* * *
35024464 GAAACGGACGTGCAGGCACTCAGCGAGCCGG
128 GAAACGGACATGCAGGCACTCAGCCAGCCGA
* * * *
35024495 AGAGGTAGAATGGCGGAAGTC-GAGGATCGACCCGGT-CCCCCTTGCGTGCTGTCGATCCTACTG
1 AGAGGCAGAAT-GCGCAAGTCGGA-GATCGGCCC-GTCCCCCCCTGCGTGCTGTCGATCCTACTG
* *
35024558 -CAGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATAAACT
63 CCA-CAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACT
35024601 TCATATGCGT
Statistics
Matches: 211, Mismatches: 40, Indels: 26
0.76 0.14 0.09
Matches are distributed among these distances:
156 2 0.01
157 31 0.15
158 90 0.43
159 67 0.32
160 20 0.09
161 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (158 bp):
AGAGGCAGAATGCGCAAGTCGGAGATCGGCCCGTCCCCCCCTGCGTGCTGTCGATCCTACTGCCA
CAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAA
ACGGACATGCAGGCACTCAGCCAGCCGA
Found at i:35024608 original size:159 final size:158
Alignment explanation
Indices: 35024107--35024608 Score: 402
Period size: 158 Copynumber: 3.2 Consensus size: 158
35024097 ACTCCGTATG
* * * ** *
35024107 CTTAGACAT-GGAATGAAC-TCTGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGAGGGA-TC
1 CTTAGAC-TGGGAATGAACTTC-ATATGCCTAAGCCAACCCATCAAAGGAGCATGC-AGGCACTC
* * * * * * * * *
35024169 AACCGATCGGAGAGGCAGAATGTGCAAGTCAGG-GATCGGCCTG-GCCCCCCCTGTGT-CTTGTC
63 AGCC-ACCGAAGAGGCAGAATGCGCAAGTC-GGAGATCGACCCGATCCCCCTCTGCGTGC-TGTC
35024231 GATCCTACTGCCACAACCCTCAGTCTGGTCTGAT
125 GATCCTACTGCCACAACCCTCAGTCTGGTCTGAT
* * * ** *
35024265 CTTAGACTGGGAATGAAC-TCTGTATGCCTAAGTCAACCCATCAAATGAGCATTTAGGCACTGAG
1 CTTAGACTGGGAATGAACTTC-ATATGCCTAAGCCAACCCATCAAAGGAGCATGCAGGCACTCAG
* * *
35024329 CCACCGAAGAGGCATAATGCGCAAGTCGGAGATCGGCCCGATCCCCCTCTGCGTGCTGTCGGTCC
65 CCACCGAAGAGGCAGAATGCGCAAGTCGGAGATCGACCCGATCCCCCTCTGCGTGCTGTCGATCC
** * * * **
35024394 CGCTGCCACAACCCTCAATC-CGACTGGGG
130 TACTGCCACAACCCTCAGTCTGGTCT-GAT
* * *
35024423 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCA-CGAAACGGA-CGTGCAGGCACTC
1 CTTAGAC-TGGGAATGAACTTCATATGCCTAAGCCAACCCATC-AAA-GGAGCATGCAGGCACTC
* * * * *
35024485 AGCGAGCCGGAGAGGTAGAATGGCGGAAGTC-GAGGATCGACCCGGTCCCCCT-TGCGTGCTGTC
63 AGCCA-CCGAAGAGGCAGAAT-GCGCAAGTCGGA-GATCGACCCGATCCCCCTCTGCGTGCTGTC
*
35024548 GATCCTACTG-CAGCAACCCTCGGTCTGGTCTGAT
125 GATCCTACTGCCA-CAACCCTCAGTCTGGTCTGAT
*
35024582 CTTAGACTGGGAATAAACTTCATATGC
1 CTTAGACTGGGAATGAACTTCATATGC
35024609 GTAGACTGGG
Statistics
Matches: 275, Mismatches: 53, Indels: 31
0.77 0.15 0.09
Matches are distributed among these distances:
156 2 0.01
157 39 0.14
158 137 0.50
159 70 0.25
160 27 0.10
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.20
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTTCATATGCCTAAGCCAACCCATCAAAGGAGCATGCAGGCACTCAGC
CACCGAAGAGGCAGAATGCGCAAGTCGGAGATCGACCCGATCCCCCTCTGCGTGCTGTCGATCCT
ACTGCCACAACCCTCAGTCTGGTCTGAT
Found at i:35024633 original size:26 final size:26
Alignment explanation
Indices: 35024584--35024634 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
35024574 GGTCTGATCT
*
35024584 TAGACTGGGAATAAACTTCATATGCG
1 TAGACTGGGAATAAACTCCATATGCG
* * *
35024610 TAGACTGGGGATGAACTCCGTATGC
1 TAGACTGGGAATAAACTCCATATGC
35024635 CTAAGTCAAC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.25
Consensus pattern (26 bp):
TAGACTGGGAATAAACTCCATATGCG
Found at i:35024757 original size:12 final size:12
Alignment explanation
Indices: 35024740--35024769 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
35024730 CTCTCTACAT
35024740 GCTGCCGATCCA
1 GCTGCCGATCCA
*
35024752 GCTGCCGATCCT
1 GCTGCCGATCCA
35024764 GCTGCC
1 GCTGCC
35024770 ACAACCTTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.10, C:0.43, G:0.27, T:0.20
Consensus pattern (12 bp):
GCTGCCGATCCA
Found at i:35025465 original size:26 final size:26
Alignment explanation
Indices: 35025427--35025479 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
35025417 CTGGTCCGAT
35025427 CTTAGACTGGGAATAAACT-TCGTATG
1 CTTAGACTGGGAATAAACTCT-GTATG
*
35025453 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATAAACTCTGTATG
35025479 C
1 C
35025480 CTAAGACAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCTGTATG
Found at i:35025797 original size:157 final size:157
Alignment explanation
Indices: 35025453--35026116 Score: 549
Period size: 159 Copynumber: 4.2 Consensus size: 157
35025443 ACTTCGTATG
* * * *
35025453 CTTAGACATGGAATGAACTCTGTATGCCTAAGACAACCCATGAAACGAGTGTGCGGGGGCTCAGT
1 CTTAGAC-TGGAATGAACTCTGTATGCATAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGT
* *
35025518 CGACCGGAGAGGCAGAATGCACATGCCGGGGATCGACCCGATCCCCCCCTGCATGCTGTCTATCC
65 CGACCGGAGAGGCAGAATGCACAAGCCGGGGATCGACCCGAT-CCCCCCTGCATGCTGTCGATCC
* *
35025583 TGCTGCCGCAACCCTCGGTCTGATCCGAT
129 TGCTACCACAACCCTCGGTCTGATCCGAT
*
35025612 CTTAGACTAGGAATCAACTCTGTATGCATAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGT
1 CTTAGACT-GGAATGAACTCTGTATGCATAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGT
** * * *
35025677 CGGTCGGAGAGGCAGAATGCATAAGTCGGGGATCGACCC-AGT-CCCCCTGCGTGCTGTCGATCC
65 CGACCGGAGAGGCAGAATGCACAAGCCGGGGATCGACCCGA-TCCCCCCTGCATGCTGTCGATCC
*
35025740 TGCTACCACAACCCTCGGTCTGATTCGAT
129 TGCTACCACAACCCTCGGTCTGATCCGAT
* * * * *
35025769 CTTAGACTGGGAATGAACTCAGTATGCATAAGTCAACCCATGAAATGAGCGTACGGGTGCTGAGC
1 CTTAGACT-GGAATGAACTCTGTATGCATAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGT
* * * * * * * *
35025834 CAACCGAAAAGGCATAATGCGCAAGCCGAGGATCGATCCGGTCCCCCACT--ATG-TGCTACTGA
65 CGACCGGAGAGGCAGAATGCACAAGCCGGGGATCGACCCGATCCCCC-CTGCATGCTG-T-C-GA
* * *
35025896 TTCCAT--TACCACAACCCTCGGT-TCAGCTG-T
126 -TCC-TGCTACCACAACCCTCGGTCTGATCCGAT
* ** * * * * * * * * * ** *
35025926 GGCTAAGACATGGAATGAACTCCATATACCTAAGCCAACCTACGAAATGGGAGGGCAAGCGCTCA
1 --CTTAGAC-TGGAATGAACTCTGTATGCATAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCA
* * * ** * * * * *
35025991 GCCGGCCAGAGAGGCAGAATGTGCAAGCCGGGCATCGGCCTGATCCCCCCTGCGTGCTGCCGATC
63 GTCGACCGGAGAGGCAGAATGCACAAGCCGGGGATCGACCCGATCCCCCCTGCATGCTGTCGATC
* * * * *
35026056 TTGTTGCCGCAACCCTCGGTC-CAGTCCGAT
128 CTGCTACCACAACCCTCGGTCTGA-TCCGAT
*
35026086 CTTAGACTAGGAATGAACTCTGTTTGC-TAAG
1 CTTAGACT-GGAATGAACTCTGTATGCATAAG
35026117 ATTGGGGATG
Statistics
Matches: 403, Mismatches: 80, Indels: 46
0.76 0.15 0.09
Matches are distributed among these distances:
156 3 0.01
157 143 0.35
158 50 0.12
159 197 0.49
160 7 0.02
161 3 0.01
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (157 bp):
CTTAGACTGGAATGAACTCTGTATGCATAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGTC
GACCGGAGAGGCAGAATGCACAAGCCGGGGATCGACCCGATCCCCCCTGCATGCTGTCGATCCTG
CTACCACAACCCTCGGTCTGATCCGAT
Found at i:35026482 original size:26 final size:26
Alignment explanation
Indices: 35026453--35026505 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
35026443 CTGGTTCGAT
*
35026453 CTTAGAC-TGGGAATAAACTTCGTATG
1 CTTAGACAT-GGAATAAACTCCGTATG
*
35026479 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATAAACTCCGTATG
35026505 C
1 C
35026506 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATAAACTCCGTATG
Found at i:35026503 original size:183 final size:183
Alignment explanation
Indices: 35026295--35026662 Score: 497
Period size: 183 Copynumber: 2.0 Consensus size: 183
35026285 TCTGGCTGGG
*
35026295 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGGGCTCAG
*** ** * *
35026360 CCGGTCGGAGAGGCAGAATGCGTAAGCCGAGGATC-AGCCCGGTCCCCCTACGTGCTGTCGATCT
66 CCAACCGGAGAGGCAGAATGCACAAGCCGAGGATCGA-CCCGATCCCCCTACGTGCTGTCGATCC
* * * * * * * *
35026424 TGCTG-TAGTAACCCTTGGTCTGGTTCGATCTTAGACTGGGAATAAACTTCGTAT
130 TACTGCCA-CAACCCTCGGTCCGATCCGATCTTAGACTGGGAATAAACTCCGTAT
* *
35026478 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGGAATGAGTGTGCGGGGGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGGGCTCAG
* * * *
35026543 CCAACCGGAGAGGCAGAATGCACATGGCGGGGATCGACCCGATCCCCCTGCGTGCTGTCGATCCT
66 CCAACCGGAGAGGCAGAATGCACAAGCCGAGGATCGACCCGATCCCCCTACGTGCTGTCGATCCT
*
35026608 ACTGCCACAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTAT
131 ACTGCCACAACCCTCGGTCCGATCCGATCTTAGACTGGGAATAAACTCCGTAT
35026661 GC
1 GC
35026663 CTAAGTCAAC
Statistics
Matches: 160, Mismatches: 23, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
183 158 0.99
184 2 0.01
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (183 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGGGCTCAG
CCAACCGGAGAGGCAGAATGCACAAGCCGAGGATCGACCCGATCCCCCTACGTGCTGTCGATCCT
ACTGCCACAACCCTCGGTCCGATCCGATCTTAGACTGGGAATAAACTCCGTAT
Found at i:35026824 original size:159 final size:157
Alignment explanation
Indices: 35026478--35026942 Score: 452
Period size: 159 Copynumber: 2.9 Consensus size: 157
35026468 AACTTCGTAT
** * * * * *
35026478 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGGAATGAGTGTGCGGGGGCTCAG
1 GCTTAGATGTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTAAG
*** * *
35026543 CCAACCGGAGAGGCAGAATGCACATGGCGGGGATCGACCCGATCCCCCTGCGTGCTGTCGATCCT
66 CCAACCGGAGAGGCAGAATGCACAAACCGGGGATCGACCCGATCCCCCTGCATGCTGTCGATCCC
35026608 ACTGCCACAACCCTCGGTCCGATCCGA
131 ACTGCCACAACCCTCGGTCCGATCCGA
* * * *
35026635 TCTTAGACTG-GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCGCTAA
1 GCTTAGA-TGTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTAA
** * * *
35026699 GCTGATCGGAGAGGCATAATGCACAAACCGGGGATCGACCCGGTCCCCCT-CTATG-TGTTACCG
65 GCCAACCGGAGAGGCAGAATGCACAAACCGGGGATCGACCCGATCCCCCTGC-ATGCTG-T--CG
* * * *
35026762 ATCCCACTGCCACAACCCTCGGTTCG-GCTGGG
126 ATCCCACTGCCACAACCCTCGGTCCGATC-CGA
* * * **
35026794 GCTTAGATGTGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCGGGCGCTCCG
1 GCTTAGATGTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTAAG
* * ** ** ** * *
35026859 TCGACCGGAGAGAAAGAATGCGTAAGTCGGGGATCGGCCCGATCCCCTCTGCGTGCTGTCGATCC
66 CCAACCGGAGAGGCAGAATGCACAAACCGGGGATCGACCCGATCCCC-CTGCATGCTGTCGATCC
** *
35026924 TGCTGCCGCAACCCTCGGT
130 CACTGCCACAACCCTCGGT
35026943 TCGGTTGGAT
Statistics
Matches: 248, Mismatches: 50, Indels: 19
0.78 0.16 0.06
Matches are distributed among these distances:
156 3 0.01
157 97 0.39
158 25 0.10
159 115 0.46
160 5 0.02
161 3 0.01
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.18
Consensus pattern (157 bp):
GCTTAGATGTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTAAG
CCAACCGGAGAGGCAGAATGCACAAACCGGGGATCGACCCGATCCCCCTGCATGCTGTCGATCCC
ACTGCCACAACCCTCGGTCCGATCCGA
Found at i:35028600 original size:159 final size:157
Alignment explanation
Indices: 35028140--35028639 Score: 453
Period size: 159 Copynumber: 3.2 Consensus size: 157
35028130 GAACTTGCAT
*
35028140 GCTTAG-CATGGAATGAAACTCCGTATGCCTAAGCCAACCCAC--AACGAGCGTGC-GGCGCTCA
1 GCTTAGACATGGAATG-AACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCA
* * * * * *
35028201 GCCGGCTGGAGAGGCAGAATGCGCAAG-CAGGGGATTGGCCCCG-TCCCCCTTACGTTCTGTCGA
65 GCC-GCCGGAGAGGCAGAATGCGCAAGCCA-AGGATCGG-CCCGATCCCCTTTGCGTGCTGTCGA
* * *
35028264 TCCTGCTACCGCAACCTTCGAT-CTATTCTAA
127 TCCTGCTACCGCAACCCTCGGTCCGA-TCTAA
* * ** * * * *
35028295 TCTTAGAC-TGGGAATGAACTCTGTATGCCTAAGTTAACCCATGAAATGAGCGTACGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCA
* * * * * * * * *
35028359 ACCGACCGGAGAGGCATAATGCACAAGCCGAGGATCGGCCCGAGCCCCCTCTGCATGCTGCCGGT
65 GCCG-CCGGAGAGGCAGAATGCGCAAGCCAAGGATCGGCCCGA-TCCCCTTTGCGTGCTGTCGAT
* * *
35028424 CCCGCTACCACAACCCTCGGTCCGA-CTAGG
128 CCTGCTACCGCAACCCTCGGTCCGATCTA-A
* * * *
35028454 GCTTTGACATGGAATGAACTCCCTATGCCTATGCCAACCCACGAAACGAGCATACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
* * *
35028519 CCAGCCGAAGAGGTAGAATGCGCAAGCCAAGGATCGGCCCGATTCCCTTTGCGTGCTTGTCGATC
66 CC-GCCGGAGAGGCAGAATGCGCAAGCCAAGGATCGGCCCGATCCCCTTTGCGTGC-TGTCGATC
* * *
35028584 CTGCTGCCGCAACCCTCGGTCCGGTCTGA
129 CTGCTACCGCAACCCTCGGTCCGATCTAA
*
35028613 TCTTAGAC-TGGGAATGAACTCCGTATG
1 GCTTAGACAT-GGAATGAACTCCGTATG
35028640 ATTAGACTGG
Statistics
Matches: 266, Mismatches: 63, Indels: 28
0.75 0.18 0.08
Matches are distributed among these distances:
155 28 0.11
156 7 0.03
157 14 0.05
158 47 0.18
159 164 0.62
160 6 0.02
ACGTcount: A:0.23, C:0.31, G:0.26, T:0.20
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
CCGCCGGAGAGGCAGAATGCGCAAGCCAAGGATCGGCCCGATCCCCTTTGCGTGCTGTCGATCCT
GCTACCGCAACCCTCGGTCCGATCTAA
Found at i:35028644 original size:26 final size:26
Alignment explanation
Indices: 35028615--35028665 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
35028605 CGGTCTGATC
35028615 TTAGACTGGGAATGAACTCCGTATGA
1 TTAGACTGGGAATGAACTCCGTATGA
* *
35028641 TTAGACTGGGGATGAACTTCGTATG
1 TTAGACTGGGAATGAACTCCGTATG
35028666 CCTAAGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGA
Found at i:35030093 original size:26 final size:26
Alignment explanation
Indices: 35030064--35030134 Score: 133
Period size: 26 Copynumber: 2.7 Consensus size: 26
35030054 AATCTTAGAC
35030064 TGGAATGAACTCCTTATGCTTATACA
1 TGGAATGAACTCCTTATGCTTATACA
35030090 TGGAATGAACTCCTTATGCTTATACA
1 TGGAATGAACTCCTTATGCTTATACA
*
35030116 TGGAATGAACTCCGTATGC
1 TGGAATGAACTCCTTATGC
35030135 CTAAGCCAAC
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 44 1.00
ACGTcount: A:0.30, C:0.20, G:0.18, T:0.32
Consensus pattern (26 bp):
TGGAATGAACTCCTTATGCTTATACA
Found at i:35030582 original size:25 final size:26
Alignment explanation
Indices: 35030548--35030599 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
35030538 TCGATTCGAT
*
35030548 CTTAGACT-GGAATGAACTCCCTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
35030573 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
35030599 C
1 C
35030600 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 8 0.33
26 16 0.67
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:35031746 original size:25 final size:26
Alignment explanation
Indices: 35031700--35031751 Score: 97
Period size: 25 Copynumber: 2.0 Consensus size: 26
35031690 CCGATTTGAT
35031700 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35031726 CTTAGACTGGG-ATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35031751 C
1 C
35031752 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 15 0.58
26 11 0.42
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35032083 original size:26 final size:26
Alignment explanation
Indices: 35032054--35032104 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
35032044 CTGATCCGAT
*
35032054 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTACGTATG
*
35032080 CTTAGACTGGGGATGAACTACGTAT
1 CTTAGACTGGGAATGAACTACGTAT
35032105 CCCGAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:35036358 original size:26 final size:25
Alignment explanation
Indices: 35036320--35036371 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 25
35036310 GGCTTAAAAT
35036320 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAAC-CCGTATG
35036346 CTTAGACAT-GGAATGAACCCGTATG
1 CTTAGAC-TGGGAATGAACCCGTATG
35036371 C
1 C
35036372 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 8 0.32
26 16 0.64
27 1 0.04
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.25
Consensus pattern (25 bp):
CTTAGACTGGGAATGAACCCGTATG
Found at i:35037358 original size:159 final size:159
Alignment explanation
Indices: 35037057--35037584 Score: 503
Period size: 159 Copynumber: 3.3 Consensus size: 159
35037047 ACTCCGTATG
* *
35037057 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTG-TGG-GTACTT
1 CTTAGA-ATGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCAGGCGT--TC
* ** * * *
35037119 AACCGGTCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCAGTCCCCCTCTACGTGCTGTTGA
63 AGCCGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCAGT-CCCCTCTGCGTGCTGTCGA
* ** *
35037184 TCCTACTGCTGCAACCGTTGA-TCTGATCCGAT
127 TCCTGCTGCCACAACCCTTGAGTCTGATCCGAT
* * ** * *
35037216 CTTAGATTGGGAATGAACTCCGTATGCATAAGTTAACTCATGAAACAAGCGTGCAGGCGTTGAGC
1 CTTAGAATGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCAGGCGTTCAGC
* * * *
35037281 CGGTCGAAGAGGCATAATGCGCAAGCCAGGGATCGGCCCAGTCTCCCTCTGCGTTCTGTCGGTCC
66 CGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCAGTC-CCCTCTGCGTGCTGTCGATCC
* * * * * * **
35037346 CGCTGCCACAACCCTCGATTCGGCT-GGGG
130 TGCTGCCACAACCCTTGAGTCTGATCCGAT
* * *** * * **
35037375 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGAGCGGGCACTCAG
1 CTTAGA-ATGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCAGGCGTTCAG
* * * * * * *
35037439 CCGATAGGAGAAGCAGAATGCGCAAGTCAGGGATCAGCCCGGTCCCCTCTGCGTGCTGCCGATCC
65 CCGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCAGTCCCCTCTGCGTGCTGTCGATCC
*
35037504 TGCTGCCACAACCCTT-AGTTTGATCCGAT
130 TGCTGCCACAACCCTTGAGTCTGATCCGAT
* * *
35037533 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACAAGCGT
1 CTTAGAATGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGT
35037585 ACGGGCGCTC
Statistics
Matches: 289, Mismatches: 72, Indels: 17
0.76 0.19 0.04
Matches are distributed among these distances:
157 5 0.02
158 76 0.26
159 199 0.69
160 7 0.02
161 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.21
Consensus pattern (159 bp):
CTTAGAATGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCAGGCGTTCAGC
CGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCAGTCCCCTCTGCGTGCTGTCGATCCT
GCTGCCACAACCCTTGAGTCTGATCCGAT
Found at i:35039061 original size:184 final size:184
Alignment explanation
Indices: 35038746--35039107 Score: 512
Period size: 184 Copynumber: 2.0 Consensus size: 184
35038736 TCTGGCTGGG
*
35038746 GCTTATACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAAGAGTGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAAGAGTGTACGGGCGCTCAG
* *
35038811 CCGATCGGAGAGGTAGAATGTGCAAGCCGGGGATCAACCCGATCCCCCCTACGTGCTGTCGATCC
66 CCGATCGGAGAGGAAGAATGTGCAAGCCAGGGATCAACCCGATCCCCCCTACGTGCTGTCGATCC
* * *
35038876 TACTGCCGCAACCCTCGGTCCAG-TCTGATCTTAGACTGGGAATGAACTCCGCAT
131 TACTACCACAACCCTCGGTCCAGTTC-AATCTTAGACTGGGAATGAACTCCGCAT
* * *
35038930 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAATGAGTGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAAGAGTGTACGGGCGCTCAG
* * *** * *
35038995 CCGATCGGAGAGGAAGAATGTGTAATCCAGGGATTGGCCC-AGTCCCCCCTGCGTGTTGTCGATC
66 CCGATCGGAGAGGAAGAATGTGCAAGCCAGGGATCAACCCGA-TCCCCCCTACGTGCTGTCGATC
* ** *
35039059 CTACTATCACAACCCTCGGTCTGGTTCAATCTTAGATTGGGAATGAACT
130 CTACTACCACAACCCTCGGTCCAGTTCAATCTTAGACTGGGAATGAACT
35039108 TCGTATGCCT
Statistics
Matches: 156, Mismatches: 20, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
183 1 0.01
184 153 0.98
185 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.22
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAAGAGTGTACGGGCGCTCAG
CCGATCGGAGAGGAAGAATGTGCAAGCCAGGGATCAACCCGATCCCCCCTACGTGCTGTCGATCC
TACTACCACAACCCTCGGTCCAGTTCAATCTTAGACTGGGAATGAACTCCGCAT
Found at i:35039419 original size:26 final size:26
Alignment explanation
Indices: 35039383--35039435 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
35039373 CTGATCCGAT
*
35039383 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
35039409 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35039435 C
1 C
35039436 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35040573 original size:26 final size:26
Alignment explanation
Indices: 35040537--35040589 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
35040527 CCGGTTCGAT
* *
35040537 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
35040563 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35040589 C
1 C
35040590 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35040595 original size:197 final size:187
Alignment explanation
Indices: 35040181--35040932 Score: 666
Period size: 197 Copynumber: 4.0 Consensus size: 187
35040171 TCCGGCTAGG
* * * * * *
35040181 GCTTAGACATGGAATGAACTCCCTATGCCTAAG-CTAACCCACGAAACGGGCGTGCAGGCACTCA
1 GCTTAGAC-TGGGATGAACTCCGTATGCCTAAGTC-AACCCACGAAACGAGCATGCGGGCGCTCA
* * * *
35040245 GCCGGTC-G--G--AGAGA--CAGAATGCGCAAGTCGGGGATCAGCCCGATCCCCACTGCGTGCT
64 GCC-GTCGGAAGTCAGAGAGGTAGAATGCGCAAGTCGGGGATC-GGCTGGTCCCC-CTGCGTGCT
* * * * * *
35040303 GCTGATCCTGCTGCCGCAACCCTCGGTCCGGTTCAATCTTCGACTGGGAATGAATTCCGTAT
126 GCCGATCCTGCTGTCGCAACCCTCGGTCCGGTTCGATCTTAGACTGGGAATGAACTCTGTAT
*
35040365 GCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATGCGGGCGCTCAG
1 GCTTAGACT-GGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAG
*
35040430 CCGGTCGGAGAGGCCAATCAGAGAGGTAGAATGCGCAAGTCAGGGATCGGTCTGGTCCCTCCTGC
65 CC-GTCGGA-A-G----TCAGAGAGGTAGAATGCGCAAGTCGGGGATCGG-CTGGTCCC-CCTGC
*
35040495 GTGCTGCCGATCCTGCTGTCGCAACCCTCGGTCCGGTTCGATCTTAGATTGGGAATGAACTCTGT
121 GTGCTGCCGATCCTGCTGTCGCAACCCTCGGTCCGGTTCGATCTTAGACTGGGAATGAACTCTGT
35040560 AT
186 AT
35040562 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAG
1 GCTTAGACT-GGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAG
* * * *
35040627 -C--C---AGTCAGAGAGGTAGAATACACAAGCCGGGGATTGGCTCGGTCCCCCCTGCGTGCTGC
65 CCGTCGGAAGTCAGAGAGGTAGAATGCGCAAGTCGGGGATCGGCT-GGT-CCCCCTGCGTGCTGC
* * * * *
35040686 CGATCCTGCTGCTGGTCCTGCTGCAGCAAACCTTGGTCTGGTCCGATCTTAGACTAGGAATGAAC
128 CGA---T-C--CT-G--CTG-T-C-GCAACCCTCGGTCCGGTTCGATCTTAGACTGGGAATGAAC
35040751 TCTGT-T
181 TCTGTAT
* * *
35040757 GGCTTAGACATGGAATGAACTCGGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCA
1 -GCTTAGAC-TGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCA
** * * * * *
35040822 GCCGATC-G--G--A-A-AGGTAGAATGCATAAGCCGGGGACCGGCCCGATCCCCCTACGTGCTG
64 GCCG-TCGGAAGTCAGAGAGGTAGAATGCGCAAGTCGGGGATCGG-CTGGTCCCCCTGCGTGCTG
* * * *
35040880 TCGATCCTGCTGTCGCAACCCTCGGTCCGATCCGATCTTAGACTAGGAATGAA
127 CCGATCCTGCTGTCGCAACCCTCGGTCCGGTTCGATCTTAGACTGGGAATGAA
35040933 TTTCGTATGC
Statistics
Matches: 482, Mismatches: 47, Indels: 79
0.79 0.08 0.13
Matches are distributed among these distances:
183 38 0.08
184 107 0.22
185 6 0.01
186 3 0.01
187 1 0.00
188 3 0.01
189 4 0.01
190 2 0.00
191 2 0.00
192 1 0.00
193 4 0.01
194 1 0.00
195 23 0.05
196 126 0.26
197 157 0.33
198 2 0.00
200 2 0.00
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (187 bp):
GCTTAGACTGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGC
CGTCGGAAGTCAGAGAGGTAGAATGCGCAAGTCGGGGATCGGCTGGTCCCCCTGCGTGCTGCCGA
TCCTGCTGTCGCAACCCTCGGTCCGGTTCGATCTTAGACTGGGAATGAACTCTGTAT
Found at i:35040787 original size:196 final size:195
Alignment explanation
Indices: 35040496--35040891 Score: 530
Period size: 196 Copynumber: 2.0 Consensus size: 195
35040486 CCCTCCTGCG
* * * *
35040496 TGCTGCCGATCCTGCTGTCGCAACCCTCGGTCCGGTTCGATCTTAGATTGGGAATGAACTCTGTA
1 TGCTGCCGATCCTGCTGTCGCAAACCTCGGTCCGGTCCGATCTTAGACTAGGAATGAACTCTGTA
* *
35040561 TGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCA
66 TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCA
* ** * * *
35040626 GCC-AGTCAGAGAGGTAGAATACACAAGCCGGGGATTGGCTCGGTCCCCCCTGCGTGCTGCCGAT
131 GCCGA-TCAGAAAGGTAGAATACACAAGCCGGGGACCGGCCCGAT-CCCCCTACGTGCTGCCGAT
35040690 CC
194 CC
* * * *
35040692 TGCTGCTGGTCCTGCTG-CAGCAAACCTTGGTCTGGTCCGATCTTAGACTAGGAATGAACTCTGT
1 TGCTGCCGATCCTGCTGTC-GCAAACCTCGGTCCGGTCCGATCTTAGACTAGGAATGAACTCTGT
*
35040756 -TGGCTTAGACAT-GGAATGAACTCGGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGC
65 AT-GCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGC
* * * *
35040819 TCAGCCGATCGGAAAGGTAGAATGCATAAGCCGGGGACCGGCCCGATCCCCCTACGTGCTGTCGA
128 TCAGCCGATCAGAAAGGTAGAATACACAAGCCGGGGACCGGCCCGATCCCCCTACGTGCTGCCGA
35040884 TCC
193 TCC
35040887 TGCTG
1 TGCTG
35040892 TCGCAACCCT
Statistics
Matches: 175, Mismatches: 21, Indels: 9
0.85 0.10 0.04
Matches are distributed among these distances:
195 26 0.15
196 147 0.84
197 2 0.01
ACGTcount: A:0.22, C:0.29, G:0.29, T:0.21
Consensus pattern (195 bp):
TGCTGCCGATCCTGCTGTCGCAAACCTCGGTCCGGTCCGATCTTAGACTAGGAATGAACTCTGTA
TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCA
GCCGATCAGAAAGGTAGAATACACAAGCCGGGGACCGGCCCGATCCCCCTACGTGCTGCCGATCC
Found at i:35041183 original size:159 final size:158
Alignment explanation
Indices: 35040757--35041259 Score: 462
Period size: 159 Copynumber: 3.2 Consensus size: 158
35040747 GAACTCTGTT
* * *
35040757 GGCTTAGACATGGAATGAACTCGGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCA
1 GGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCA
* * * * * * * * *
35040822 GCCGATCGGAAAGGTAGAATGCATAAGCCGGGGACCGGCCCGAT-CCCCCTACGTGCTGTCGATC
66 GCCGATCGGAGAGGCAGAATGCGTAAGGCAGAGATCGGCCTGGTCCCCCCTACGTGCTGTCGATC
* *
35040886 CTGCTGTCGCAACCCTCGGTCCGATCCG
131 CTGCTGCCGTAACCCTCGGTCCGATCCG
** * * * * * * * *
35040914 ATCTTAGAC-TAGGAATGAATTTCGTATGCCTAAGTCAACCCATGAAACGACCGTTCGGGCGTTG
1 GGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTC
* * * * * * * * **
35040978 AGCCGACCGAAGAGGCATAATGCGCAA-GCTGAGGATCAG-ATCGGTCCCCCTCTATGTGCTACC
65 AGCCGATCGGAGAGGCAGAATGCGTAAGGCAGA-GATCGGCCT-GGTCCCCC-CTACGTGCTGTC
* * * *
35041041 GATCCCGCTGCCATAACCCTCGGTCCG-GCTGG
127 GATCCTGCTGCCGTAACCCTCGGTCCGATC-CG
* * * * *
35041073 GGCTTAGACATGGAATGAACTCCTTATGCCTCAGCCAACCCACGAAACGGGTGTACGGGTGCTCA
1 GGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCA
35041138 GCCGATCGGAGAGGCAGAATGCGTAAGGCAGAGATCGGCCTGGTCCCCCCTACGTGCTGTCGATC
66 GCCGATCGGAGAGGCAGAATGCGTAAGGCAGAGATCGGCCTGGTCCCCCCTACGTGCTGTCGATC
* * *
35041203 CTGCTACCGTAACCCTCGGT-CTAGTCTG
131 CTGCTGCCGTAACCCTCGGTCCGA-TCCG
**
35041231 ATCTTAGAC-TGGGAATGAACTCCGTATGC
1 GGCTTAGACAT-GGAATGAACTCCGTATGC
35041260 TTAGACTGGG
Statistics
Matches: 264, Mismatches: 70, Indels: 23
0.74 0.20 0.06
Matches are distributed among these distances:
156 3 0.01
157 78 0.30
158 60 0.23
159 117 0.44
160 6 0.02
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (158 bp):
GGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCA
GCCGATCGGAGAGGCAGAATGCGTAAGGCAGAGATCGGCCTGGTCCCCCCTACGTGCTGTCGATC
CTGCTGCCGTAACCCTCGGTCCGATCCG
Found at i:35041269 original size:26 final size:26
Alignment explanation
Indices: 35041233--35041285 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
35041223 CTAGTCTGAT
35041233 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
35041259 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35041285 C
1 C
35041286 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35041640 original size:26 final size:26
Alignment explanation
Indices: 35041611--35041664 Score: 92
Period size: 26 Copynumber: 2.1 Consensus size: 26
35041601 TCCGGTCTGA
35041611 GCTTAGAC-TAGGAATGAACTCCGTAT
1 GCTTAGACAT-GGAATGAACTCCGTAT
35041637 GCTTAGACATGGAATGAACTCCGTAT
1 GCTTAGACATGGAATGAACTCCGTAT
35041663 GC
1 GC
35041665 CTAAGCCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 26 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (26 bp):
GCTTAGACATGGAATGAACTCCGTAT
Found at i:35042110 original size:26 final size:26
Alignment explanation
Indices: 35042081--35042133 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35042071 CAGATCCGAT
35042081 CTTAGATTGGGAATGAACT-CCGTATG
1 CTTAGATTGGGAATGAA-TGCCGTATG
*
35042107 CTTAGATTGGGGATGAATGCCGTATG
1 CTTAGATTGGGAATGAATGCCGTATG
35042133 C
1 C
35042134 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.25, C:0.15, G:0.30, T:0.30
Consensus pattern (26 bp):
CTTAGATTGGGAATGAATGCCGTATG
Found at i:35042752 original size:11 final size:11
Alignment explanation
Indices: 35042716--35042756 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
35042706 GGCTTCTCTC
35042716 CGGTGATGCTT
1 CGGTGATGCTT
** *
35042727 CGACGATGCTC
1 CGGTGATGCTT
35042738 CGGTGATGCTT
1 CGGTGATGCTT
35042749 CGGTGATG
1 CGGTGATG
35042757 GTGCCCCGGG
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.12, C:0.22, G:0.37, T:0.29
Consensus pattern (11 bp):
CGGTGATGCTT
Found at i:35042864 original size:26 final size:26
Alignment explanation
Indices: 35042826--35042878 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
35042816 GGCACAAAAT
*
35042826 CTTAGACAGGGAATGAACACTGTATG
1 CTTAGACAGGGAATGAACACCGTATG
* *
35042852 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACACCGTATG
35042878 C
1 C
35042879 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.19, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACACCGTATG
Found at i:35043793 original size:159 final size:159
Alignment explanation
Indices: 35043499--35043807 Score: 406
Period size: 159 Copynumber: 1.9 Consensus size: 159
35043489 TCGATCCCGC
* * * *
35043499 TACCAGTCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTTCATATGC
1 TACCAGACCTGCTGCCACAACCCTCGGTCCAACTGGGGCTTAGACACGAAATGAACTTCATATGC
* * * * **
35043564 CTAAGCCAACCCATGAAATGAGCGTGCGGGTGCTCAGTCGGCCAGAGAAGCATAATGTGCAAGCC
66 CTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAGCCAGCCAGAGAAGCAGAATGCACAAGCC
35043629 AGGGATCGAACCGGTCCCCCTCTACGTGA
131 AGGGATCGAACCGGTCCCCCTCTACGTGA
* * *
35043658 TACCAGACTTGCTGCTACAACCCTCGGTCCAACTGGGGCTTAGACACGAAATGAA-TTCCCTATG
1 TACCAGACCTGCTGCCACAACCCTCGGTCCAACTGGGGCTTAGACACGAAATGAACTT-CATATG
* * * * *
35043722 CCTAAGCCAACCCACGAAATGGGCGTGTGGGTGCTTAGCCAGCC-GAAGAGGTAGAATGCACAAG
65 CCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAGCCAGCCAG-AGAAGCAGAATGCACAAG
* *
35043786 CCGGGGATCGACCCGGTCCCCC
129 CCAGGGATCGAACCGGTCCCCC
35043808 CTGCGTGCTG
Statistics
Matches: 128, Mismatches: 20, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
158 3 0.02
159 125 0.98
ACGTcount: A:0.25, C:0.30, G:0.27, T:0.18
Consensus pattern (159 bp):
TACCAGACCTGCTGCCACAACCCTCGGTCCAACTGGGGCTTAGACACGAAATGAACTTCATATGC
CTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAGCCAGCCAGAGAAGCAGAATGCACAAGCC
AGGGATCGAACCGGTCCCCCTCTACGTGA
Found at i:35043905 original size:26 final size:26
Alignment explanation
Indices: 35043854--35043906 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
35043844 CTGGTCTGAT
* *
35043854 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
35043880 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
35043906 C
1 C
35043907 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:35045297 original size:159 final size:157
Alignment explanation
Indices: 35044965--35045551 Score: 632
Period size: 159 Copynumber: 3.7 Consensus size: 157
35044955 GAACTTTGTA
* * *
35044965 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCCACGAAACAAGCGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA-CCCACGAAACGAGCGTGCAGGCGCTCA
* * * * *
35045030 GCCGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCTCTACGTG-TTGCTGT
65 GCCGGTCGAAGAGGCAGAATGCACAAGCCAGGGATCGACCCGGTCCCCCTCTGCGTGCTT-C-GT
* *
35045094 CCCGCTGCCACAACCCTTCGTTCG-GCTGGG
128 CCCGCTACCACAACCC-TCGTCCGAGCTGGG
* *
35045124 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGGGTGCAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAG
* *
35045189 CCGGTCGAAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCAT-TGCGTGCTATCGAT
66 CCGGTCGAAGAGGCAGAATGCACAAGCCAGGGATCGACCCGGTCCCCC-TCTGCGTGCT-TCG-T
** * * * *
35045253 CCTACTACCGCAACCCTCAATCCGATCT-GA
128 CCCGCTACCACAACCCTC-GTCCGAGCTGGG
* * * * * *
35045283 TCTTAGAC-TGGGAATGAACTCCCTATGCCTAAGTCAACTCACGAAACGAGCGTGCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCA
* * * * * * *
35045347 GCC-GACTGAAGAGGCATAATGCATAAGCC-GAGGATTGGCCCGGTCCCCCTCGGTGTGCTGTCG
65 GCCGGTC-GAAGAGGCAGAATGCACAAGCCAG-GGATCGACCCGGTCCCCCTCTGCGTGCT-TC-
*
35045410 GTCCCGCTACCACAACCCTTGGTCC-AGCTGGG
126 GTCCCGCTACCACAACCC-TCGTCCGAGCTGGG
*
35045442 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAG
* * ***
35045507 CCGATCGGAGAGGCAGAATGCACAAGATGGGGATCGACCCGGTCC
66 CCGGTCGAAGAGGCAGAATGCACAAGCCAGGGATCGACCCGGTCC
35045552 ATCCTGTGTG
Statistics
Matches: 353, Mismatches: 59, Indels: 32
0.80 0.13 0.07
Matches are distributed among these distances:
158 84 0.24
159 261 0.74
160 8 0.02
ACGTcount: A:0.24, C:0.32, G:0.28, T:0.17
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAG
CCGGTCGAAGAGGCAGAATGCACAAGCCAGGGATCGACCCGGTCCCCCTCTGCGTGCTTCGTCCC
GCTACCACAACCCTCGTCCGAGCTGGG
Found at i:35045925 original size:671 final size:663
Alignment explanation
Indices: 35044601--35046228 Score: 1756
Period size: 671 Copynumber: 2.4 Consensus size: 663
35044591 ACTCCGTATG
* ** * ***
35044601 CTTAGACAT-GGAATGAACTCCATACACCTAAG-CTAACCCATGAAACGAGCGTGCGGGTGTTGA
1 CTTAGAC-TGGGAATGAACTCCCTATGCCTAAGTC-AACCCACGAAACGAGCGTGCGGGCACTGA
* * * **
35044664 GTCGACCGAAGAGGCATAATGCGCAAGCCGAGGATCAGCCCGGTCCCCCTCTACGTGCTGTCGAT
64 GCCGACCAAAGAGGCATAATGCACAAGCCGAGGATTGGCCCGGT-CCCC-CT-CG-G-TGT-G--
* * ** *
35044729 CCCACTGCCAGTCTTGCTACCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCG
121 ----CTACCGGTCCCGCTACCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCC
* * * * **
35044794 TATGCCTAAGCCAACCCACGGAATGAGCGTACGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCGC
182 TATGCCTAAGCCAACCCACGAAACGGGCGTGC-GGCGCTCAGCCGATCGGAGAGGCAGAATGCGC
* * * * *
35044859 AAGCTGGGGATCGGCCCGGTCCCCCCTGGTTCTGTCGATCCTGCTGCTGGTCCTATTGTCGCAAC
246 AAGCTGGGGATCGACCCGGTCCACCCTGG-T-TGTCG---C-GCTACTGATCCTATTGTCGCAAA
* * * **
35044924 CCTCGGTCTGATCCAATCTTAGACTGGGAATGAACTTTGTAGCTTAGACATGGAATGAACTCCGT
305 CCTCGGTCAGATCCAATCTTAGACTAGAAATGAACTCCGTAGCTTAGACATGGAATGAACTCCGT
* * *
35044989 ATGCCTAAGCCAACCCCACGAAACAAGCGTGCGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCGC
370 ATGCCTAAGCCAACCCCACGAAACAAGCGTGCGGACGCTCAACCGGCCGGAGAGGCAGAATGCGA
* * * *
35045054 AAGCCAGGGATCGGCCCGGTCCCCCTCTACGTGTTGCTGTCCCGCTGCCACAACCCTTCGTTCGG
435 AAGCCAGGGATCAGCCCGGACCCCCTCTACGTGTTGCTGTCCCGCTGCCACAACCCATCGTCCGG
* * *
35045119 CTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGGGTGCAGGCG
500 CTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCG
* *
35045184 CTCAGCCGGTCGAAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCATTGCGTGCTAT
565 CTCAGCCGGTCGAAGAGGCAGAATGCACAAGCCAGGGATCGACCCGATCCCCCA-TGCATGCTAT
*
35045249 CGATCCTACTACCGCAACCCTCAATCCGATCTGAT
629 CGATCCTACTACCGCAACCCTCAATCCGATCCGAT
*
35045284 CTTAGACTGGGAATGAACTCCCTATGCCTAAGTCAACTCACGAAACGAGCGTGCGGGCACTGAGC
1 CTTAGACTGGGAATGAACTCCCTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTGAGC
** * **
35045349 CGACTGAAGAGGCATAATGCATAAGCCGAGGATTGGCCCGGTCCCCCTCGGTGTGCTGTCGGTCC
66 CGACCAAAGAGGCATAATGCACAAGCCGAGGATTGGCCCGGTCCCCCTCGGTGTGCTACCGGTCC
*
35045414 CGCTACCACAACCCTTGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
131 CGCTACCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
* *
35045479 CCCACGAAACGGGCGTGCAGGCGCTCAGCCGATCGGAGAGGCAGAATGCACAAGATGGGGATCGA
196 CCCACGAAACGGGCGTGC-GGCGCTCAGCCGATCGGAGAGGCAGAATGCGCAAGCTGGGGATCGA
* * * ***
35045544 CCCGGTCCATCCT-G-TGT-G-G-TAC-GATCCTATTG-CTGTAAACCTCGATTCAG-TTTGATC
260 CCCGGTCCACCCTGGTTGTCGCGCTACTGATCCTATTGTC-GCAAACCTCG-GTCAGATCCAATC
* *
35045601 TTAGACTAGAAATGAACTCCGTATGCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAA-CC
323 TTAGACTAGAAATGAACTCCGTA-GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCC
* * * * *
35045664 CATGAAACAAGCGTGCGGATGCTCAACCGGCCGGAGAGGCATAATGCGAAAGTCGGGGATCAGCC
386 CACGAAACAAGCGTGCGGACGCTCAACCGGCCGGAGAGGCAGAATGCGAAAGCCAGGGATCAGCC
** * *
35045729 C-GACCCCCTTCTGTGTGGTACCGATCCCGCTGTCGATCCTGCTGGCACAA-CCATCGGTCCGGT
451 CGGACCCCC-TCTACGT-GT-----T---GCTGTC---CC-GCTGCCACAACCCATC-GTCCGGC
* * * *
35045792 TGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGTGC
501 TGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCGC
* * * * * *
35045857 TCAGTCGGTCGGAGAGGCAGAATGCACAAGCCGGGGATTGACCCGGTCCCTCC-TGCATGCTGTC
566 TCAGCCGGTCGAAGAGGCAGAATGCACAAGCCAGGGATCGACCCGATCCC-CCATGCATGCTATC
** * * *
35045921 GATCCTACTGTCGCAACCCTCAGTCTGGTCCGAT
630 GATCCTACTACCGCAACCCTCAATCCGATCCGAT
* * * **
35045955 CTTAGACTGGGAATGAACTCCGTATGCGTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTGAGC
1 CTTAGACTGGGAATGAACTCCCTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTGAGC
* * * * * *
35046020 CGACCAAAGAGGCATAATGCGCAAGCTGGGGTTTGGCTCGGTCCCCCTCTGTGTGCTACCGGTCC
66 CGACCAAAGAGGCATAATGCACAAGCCGAGGATTGGCCCGGTCCCCCTCGGTGTGCTACCGGTCC
* ** **
35046085 CGCTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAAAAAACTCCCTATGCCTAAGCCAA
131 CGCTACCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
* * * * * *
35046150 CCCACGAAACGGGTGAGCGGCCGCTCAACTGATCGAAGAGGCAGAATGCGCAAGCTGGGGATCGT
196 CCCACGAAACGGGCGTGCGG-CGCTCAGCCGATCGGAGAGGCAGAATGCGCAAGCTGGGGATCGA
* *
35046215 CCCGATCCCCCCTG
260 CCCGGTCCACCCTG
35046229 CGTGCTACCG
Statistics
Matches: 803, Mismatches: 118, Indels: 59
0.82 0.12 0.06
Matches are distributed among these distances:
658 7 0.01
659 105 0.13
660 40 0.05
661 1 0.00
665 1 0.00
666 1 0.00
667 3 0.00
668 6 0.01
670 3 0.00
671 414 0.52
672 116 0.14
673 2 0.00
677 1 0.00
678 3 0.00
679 1 0.00
680 2 0.00
681 2 0.00
682 5 0.01
683 89 0.11
684 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (663 bp):
CTTAGACTGGGAATGAACTCCCTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTGAGC
CGACCAAAGAGGCATAATGCACAAGCCGAGGATTGGCCCGGTCCCCCTCGGTGTGCTACCGGTCC
CGCTACCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
CCCACGAAACGGGCGTGCGGCGCTCAGCCGATCGGAGAGGCAGAATGCGCAAGCTGGGGATCGAC
CCGGTCCACCCTGGTTGTCGCGCTACTGATCCTATTGTCGCAAACCTCGGTCAGATCCAATCTTA
GACTAGAAATGAACTCCGTAGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCCACGA
AACAAGCGTGCGGACGCTCAACCGGCCGGAGAGGCAGAATGCGAAAGCCAGGGATCAGCCCGGAC
CCCCTCTACGTGTTGCTGTCCCGCTGCCACAACCCATCGTCCGGCTGGGGCTTAGACATGGAATG
AACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCGCTCAGCCGGTCGAAGAGGCAG
AATGCACAAGCCAGGGATCGACCCGATCCCCCATGCATGCTATCGATCCTACTACCGCAACCCTC
AATCCGATCCGAT
Found at i:35046045 original size:158 final size:158
Alignment explanation
Indices: 35045761--35046613 Score: 639
Period size: 159 Copynumber: 5.4 Consensus size: 158
35045751 GATCCCGCTG
* * * * ** **
35045761 TCGATCCTGCTGGCACAACCATCGGTCCGGTTGGGGCTTAGACATGGAATGAACTCCGTATGCCT
1 TCGATCCTGCTGCCACAACCCTCAGTCTGGTCCGATCTTAGACATGGAATGAACTCCGTATGCCT
* * * ** * * *
35045826 AAGCCAACCCATGAAACGAGCGTACGGGTGCTCAGTCGGTCGGAGAGGCAGAATGCACAAGCCGG
66 AAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGTCGAAGAGGCAGAATGCGCAAGCTGG
* * * *
35045891 GGATTGACCCGGTCCCTCCTGCATGCTG
131 GGATCGACCCGGTCCCCCCTGCGTGCTA
* * * *
35045919 TCGATCCTACTGTCGCAACCCTCAGTCTGGTCCGATCTTAGAC-TGGGAATGAACTCCGTATGCG
1 TCGATCCTGCTGCCACAACCCTCAGTCTGGTCCGATCTTAGACAT-GGAATGAACTCCGTATGCC
* * * * * ** * *
35045983 TAAGTCAACCCATGAAACGAGCGTGCGGGTGCTGAGCCGACCAAAGAGGCATAATGCGCAAGCTG
65 TAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGTCGAAGAGGCAGAATGCGCAAGCTG
* * * * *
35046048 GGGTTTGGCTCGGTCCCCCTCTGTGTGCTA
130 GGGATCGACCCGGTCCCCC-CTGCGTGCTA
* * * * * ** ** *
35046078 CCGGTCCCGCTGCCACAACCCTCGGTCTGG-CTGGGGCTTAGACATGGAAAAAACTCCCTATGCC
1 TCGATCCTGCTGCCACAACCCTCAGTCTGGTC-CGATCTTAGACATGGAATGAACTCCGTATGCC
* * * * * *
35046142 TAAGCCAACCCACGAAACGGGTGAGCGGCCGCTCAACTGATCGAAGAGGCAGAATGCGCAAGCTG
65 TAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGTCGAAGAGGCAGAATGCGCAAGCTG
* *
35046207 GGGATCGTCCCGATCCCCCCTGCGTGCTA
130 GGGATCGACCCGGTCCCCCCTGCGTGCTA
* ** * ** * ** *
35046236 CCGATCCTGCTATCAAAACCCTC-GTAC-GGTCTAATCTTAGAC-TGGGAATGACCTTTGTACGC
1 TCGATCCTGCTGCCACAACCCTCAGT-CTGGTCCGATCTTAGACAT-GGAATGAACTCCGTATGC
* * * * * * * * *
35046298 CTAAGTCAACTCACAAAACGAGCGTACGAGCGCTAAATCGGTCGGAGAGGCATAATGCGCAAG-T
64 CTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGTCGAAGAGGCAGAATGCGCAAGCT
** * *
35046362 CGGGGATCGACTTGGTCCCCCTCTGTGTGCTGC
129 -GGGGATCGACCCGGTCCCCC-CTGCGTGCT-A
* * * * *
35046395 TGGTTCC-GCTGCCACAACCCTCAGTCCAGGTGGCG--CTTAGACATGGAATGAACTCCCTATGC
1 TCGATCCTGCTGCCACAACCCTCAGT-CTGGT-CCGATCTTAGACATGGAATGAACTCCGTATGC
* * * * *
35046457 CTAAGCCAACCCACGAAACGGGCGTGCAGGCGCTCAACCGGCCGAAAAGGCAGAATGTGCAAGCT
64 CTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGTCGAAGAGGCAGAATGCGCAAGCT
* * *
35046522 GGGTATCGGCCCGATCCCCCC-GCGTGCTA
129 GGGGATCGACCCGGTCCCCCCTGCGTGCTA
* * ** * * *
35046551 TCGATCCTACTGCCGCAACCCTTGGTCTGATCTGATTTTAGAC-TGGGAATGAACTCCGTATGC
1 TCGATCCTGCTGCCACAACCCTCAGTCTGGTCCGATCTTAGACAT-GGAATGAACTCCGTATGC
35046614 TTAGACTGGG
Statistics
Matches: 529, Mismatches: 147, Indels: 39
0.74 0.21 0.05
Matches are distributed among these distances:
155 1 0.00
156 11 0.02
157 130 0.25
158 171 0.32
159 210 0.40
160 6 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (158 bp):
TCGATCCTGCTGCCACAACCCTCAGTCTGGTCCGATCTTAGACATGGAATGAACTCCGTATGCCT
AAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGTCGAAGAGGCAGAATGCGCAAGCTGG
GGATCGACCCGGTCCCCCCTGCGTGCTA
Found at i:35046389 original size:316 final size:315
Alignment explanation
Indices: 35045769--35046610 Score: 888
Period size: 316 Copynumber: 2.7 Consensus size: 315
35045759 TGTCGATCCT
* * * *
35045769 GCTGGCACAACCATCGGTCCGGTTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
1 GCTGCCACAACCCTCGGTCAGG-TGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
* * * * * * *
35045834 CCATGAAACGAGCGT-A-CGGGTGCTC-AGTCGGTCGGAGAGGCAGAATGCACAAGCCGGGGATT
65 CCACGAAACG-G-GTGAGC-GGCGCTCAACT-GGTCGAAGAGGCAGAATGCGCAAGCTGGGGATC
* * * * * ** *
35045896 GACCCGGTCCCTCCTGCATGCTGTCGATCCTACTGTCGCAACCCTCAGTCTGGTCCGATCTTAGA
126 GACCCGATCCCCCCTGCGTGCTATCGATCCTACTATCAAAACCCTCAGTCTGGTCCAATCTTAGA
* * ** * * * * *
35045961 CTGGGAATGAACTCCGTATGCGTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTGAGCCGACCA
191 CTGGGAATGAACTCCGTACGCCTAAGTCAACCCACAAAACGAGCGTACGAGCGCTAAACCGACCA
* * *
35046026 AAGAGGCATAATGCGCAAGCTGGGGTTTGGCTCGGTCCCCCTCTGTGTGCTACCGGTCCC
256 AAGAGGCATAATGCGCAAGCTGGGGATCGACTCGGTCCCCCTCTGTGTGCTACCGGTCCC
* **
35046086 GCTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAAAAAACTCCCTATGCCTAAGCCAAC
1 GCTGCCACAACCCTCGGTCAGG-TGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
* *
35046151 CCACGAAACGGGTGAGCGGCCGCTCAACTGATCGAAGAGGCAGAATGCGCAAGCTGGGGATCGTC
65 CCACGAAACGGGTGAGCGG-CGCTCAACTGGTCGAAGAGGCAGAATGCGCAAGCTGGGGATCGAC
* * *
35046216 CCGATCCCCCCTGCGTGCTACCGATCCTGCTATCAAAACCCTC-GTAC-GGTCTAATCTTAGACT
129 CCGATCCCCCCTGCGTGCTATCGATCCTACTATCAAAACCCTCAGT-CTGGTCCAATCTTAGACT
* ** * * ** **
35046279 GGGAATGACCTTTGTACGCCTAAGTCAACTCACAAAACGAGCGTACGAGCGCTAAATCGGTCGGA
193 GGGAATGAACTCCGTACGCCTAAGTCAACCCACAAAACGAGCGTACGAGCGCTAAACCGACCAAA
* * * *
35046344 GAGGCATAATGCGCAAG-TCGGGGATCGACTTGGTCCCCCTCTGTGTGCTGCTGGTTCC
258 GAGGCATAATGCGCAAGCT-GGGGATCGACTCGGTCCCCCTCTGTGTGCTACCGGTCCC
* *
35046402 GCTGCCACAACCCTCAGTCCAGGTGGCGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
1 GCTGCCACAACCCTCGGT-CAGGTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
* * * * * * * *
35046467 CCACGAAACGGGCGTGCAGGCGCTCAACCGGCCGAAAAGGCAGAATGTGCAAGCTGGGTATCGGC
65 CCACGAAACGGGTGAGC-GGCGCTCAACTGGTCGAAGAGGCAGAATGCGCAAGCTGGGGATCGAC
** ** ** * ** *
35046532 CCGATCCCCCC-GCGTGCTATCGATCCTACTGCCGCAACCCTTGGTCTGATCTGATTTTAGACTG
129 CCGATCCCCCCTGCGTGCTATCGATCCTACTATCAAAACCCTCAGTCTGGTCCAATCTTAGACTG
35046596 GGAATGAACTCCGTA
194 GGAATGAACTCCGTA
35046611 TGCTTAGACT
Statistics
Matches: 436, Mismatches: 79, Indels: 21
0.81 0.15 0.04
Matches are distributed among these distances:
315 28 0.06
316 264 0.61
317 142 0.33
318 2 0.00
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.20
Consensus pattern (315 bp):
GCTGCCACAACCCTCGGTCAGGTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
CACGAAACGGGTGAGCGGCGCTCAACTGGTCGAAGAGGCAGAATGCGCAAGCTGGGGATCGACCC
GATCCCCCCTGCGTGCTATCGATCCTACTATCAAAACCCTCAGTCTGGTCCAATCTTAGACTGGG
AATGAACTCCGTACGCCTAAGTCAACCCACAAAACGAGCGTACGAGCGCTAAACCGACCAAAGAG
GCATAATGCGCAAGCTGGGGATCGACTCGGTCCCCCTCTGTGTGCTACCGGTCCC
Found at i:35047644 original size:158 final size:157
Alignment explanation
Indices: 35047252--35047995 Score: 423
Period size: 158 Copynumber: 4.6 Consensus size: 157
35047242 AACTCTGTAT
* * * * * * **
35047252 GCTTAGACATTGAATGAACTCCGTATGCCTAAGCCAACACACGAAACGAGCATGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACTCATGAAATGAGCGTACGGGCACTCAG
* * * * * *
35047317 CC-GACT-GAGAGGCAGAATGCGCAAGCCGGGGAT-TAGCCTGGTACCCCC-TGCGTGCTGTCGA
66 CCAG-CTAGAGAGGCAGAATGCACAAGTCGAGGATCGA-CCCGG--CCCCCATGCGTGCTGCCGA
* * * * * * * * *
35047378 TCTTGTTGTCGCAACCCTCGGT-CTGATCCGA
127 TCCTGCTGCCACAACCCTCGATCCGGCT-GGG
* * * * * * * * * * * * *
35047409 TCTTAGACAGGGAATGAACTTCGTATGCATAAGTCGACCCACGAAACGAGCGTACAGTCATTGAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACTCATGAAATGAGCGTACGGGCACTCAG
* * * * *
35047474 TCGGC-CGAAGAGGCATAATTCACAAGTCGAGGATCGACCCGGCCCCCTATGCGTGCTGCCGATC
66 CCAGCTAG-AGAGGCAGAATGCACAAGTCGAGGATCGACCCGGCCCCC-ATGCGTGCTGCCGATC
*
35047538 CTGCTACCACAACCCTCGATCCGGCTGGG
129 CTGCTGCCACAACCCTCGATCCGGCTGGG
* * *
35047567 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAATCATGAAATGGGCGTACGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACTCATGAAATGAGCGTACGGGCACTCAG
* * * * * *
35047632 CCAGCTAGAGAGGCAGAATGCGCAAG-CCAGGAATCGATCCGGTCCCCCCTGCGTGTTGCTGATC
66 CCAGCTAGAGAGGCAGAATGCACAAGTCGAGG-ATCGACCCGG-CCCCCATGCGTGCTGCCGATC
* * *
35047696 CTGCTGCCACAACCCTCGGTCCGATCCT--A
129 CTGCTGCCACAACCCTCGATCCG--GCTGGG
* * ** * **
35047725 TCTTAGAC-TAGGAATGAACTTCGTATGCCTAAATCAACCCATGAAATGAGCGTATAGGCACTCA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACTCATGAAATGAGCGTACGGGCACTCA
* * * * * * * * *
35047789 GCC-GGTCGAAGATGCATAATGCGCAAGCCGGGGATTGGTCGATCCCCCTCTGCGTGCTGCCAAT
65 GCCAGCTAG-AGAGGCAGAATGCACAAGTCGAGGA----TCGA-----C-C--CG-GC-CCCCAT
* * * *
35047853 -CTTGCTGTCGGTCCTGCTGCCACAACCCTCGATCCGGTTGGG
115 GCGTGCTGCCGATCCTGCTGCCACAACCCTCGATCCGGCTGGG
* * * ** *
35047895 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACTCACGAAATGAGCGTGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACTCATGAAATGAGCGTACGGGCACTCAG
**
35047960 CCAGCCGGAGAGGCAGAATGCACAAGTCGAGGATCG
66 CCAGCTAGAGAGGCAGAATGCACAAGTCGAGGATCG
35047996 GCCCAGTCCG
Statistics
Matches: 438, Mismatches: 116, Indels: 57
0.72 0.19 0.09
Matches are distributed among these distances:
156 5 0.01
157 60 0.14
158 237 0.54
159 13 0.03
160 2 0.00
162 4 0.01
166 3 0.01
168 2 0.00
170 105 0.24
171 7 0.02
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.20
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACTCATGAAATGAGCGTACGGGCACTCAG
CCAGCTAGAGAGGCAGAATGCACAAGTCGAGGATCGACCCGGCCCCCATGCGTGCTGCCGATCCT
GCTGCCACAACCCTCGATCCGGCTGGG
Found at i:35047845 original size:316 final size:320
Alignment explanation
Indices: 35047252--35047985 Score: 806
Period size: 316 Copynumber: 2.3 Consensus size: 320
35047242 AACTCTGTAT
* * *
35047252 GCTTAGACATTGAATGAACTCCGTATGCCTAAGCCAACA-CACGAAACGAGCATGCGGGTGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA-ATCACGAAATGAGCGTGCGGGTGCTCA
* * *
35047316 GCC-GACTGAGAGGCAGAATGCGCAAGCCGGGGATTAGCCTGGTACCCCCTGCGTGCTGTCGATC
65 GCCAG-CTGAGAGGCAGAATGCGCAAGCCAGGAATGAGCCTGGTACCCCCTGCGTGCTGTCGATC
* * * * * * *
35047380 TTGTTGTCGCAACCCTCGGTCTGATCCGATCTTAGACAGGGAATGAACTTCGTATGCATAAGTCG
129 CTGCTGCCACAACCCTCGGTCCGATCCGATCTTAGACAGGGAATGAACTTCGTATGCATAAATCA
* * * * * *
35047445 ACCCACGAAACGAGCGTACAGTCATTGAGTCGGCCGAAGAGGCATAATTCACAAGTCGAGGATCG
194 ACCCACGAAACGAGCGTACAGGCACTCAGCCGGCCGAAGAGGCATAATGCACAAGCCGAGGATCG
35047510 ACCCGGCCCCCTATGC-G-TG-C-TGC-CGATCCTGCTACCACAACCCTCGATCCGGCTGGG
259 ACCCGGCCCCCTATGCGGCTGACTTGCTCGATCCTGCTACCACAACCCTCGATCCGGCTGGG
* * * * **
35047567 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAATCATGAAATGGGCGTACGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAATCACGAAATGAGCGTGCGGGTGCTCAG
* * *
35047632 CCAGCTAGAGAGGCAGAATGCGCAAGCCAGGAATCGATCC-GGTCCCCCCTGCGTGTTG-CTGAT
66 CCAGCT-GAGAGGCAGAATGCGCAAGCCAGGAAT-GAGCCTGGTACCCCCTGCGTGCTGTC-GAT
* *
35047695 CCTGCTGCCACAACCCTCGGTCCGATCCTATCTTAGACTA-GGAATGAACTTCGTATGCCTAAAT
128 CCTGCTGCCACAACCCTCGGTCCGATCCGATCTTAGAC-AGGGAATGAACTTCGTATGCATAAAT
* * * * * * *
35047759 CAACCCATGAAATGAGCGTATAGGCACTCAGCCGGTCGAAGATGCATAATGCGCAAGCCGGGGAT
192 CAACCCACGAAACGAGCGTACAGGCACTCAGCCGGCCGAAGAGGCATAATGCACAAGCCGAGGAT
* ** * * * *
35047824 TG-GTCGATCCCCCTCTGCGTGCTGCCAATCTTGCTGTCGGTCCTGCTGCCACAACCCTCGATCC
257 CGACCCG-GCCCCCTATGCG-GCTG---A-CTTGC--TCGATCCTGCTACCACAACCCTCGATCC
*
35047888 GGTTGGG
314 GGCTGGG
* * *
35047895 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACTCACGAAATGAGCGTGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAATCACGAAATGAGCGTGCGGGTGCTCAG
* *
35047960 CCAGCCGGAGAGGCAGAATGCACAAG
66 CCAG-CTGAGAGGCAGAATGCGCAAG
35047986 TCGAGGATCG
Statistics
Matches: 343, Mismatches: 56, Indels: 27
0.81 0.13 0.06
Matches are distributed among these distances:
314 1 0.00
315 61 0.18
316 160 0.47
317 4 0.01
318 1 0.00
319 2 0.01
324 1 0.00
325 3 0.01
328 109 0.32
329 1 0.00
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.20
Consensus pattern (320 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAATCACGAAATGAGCGTGCGGGTGCTCAG
CCAGCTGAGAGGCAGAATGCGCAAGCCAGGAATGAGCCTGGTACCCCCTGCGTGCTGTCGATCCT
GCTGCCACAACCCTCGGTCCGATCCGATCTTAGACAGGGAATGAACTTCGTATGCATAAATCAAC
CCACGAAACGAGCGTACAGGCACTCAGCCGGCCGAAGAGGCATAATGCACAAGCCGAGGATCGAC
CCGGCCCCCTATGCGGCTGACTTGCTCGATCCTGCTACCACAACCCTCGATCCGGCTGGG
Found at i:35048301 original size:26 final size:26
Alignment explanation
Indices: 35048262--35048315 Score: 92
Period size: 26 Copynumber: 2.1 Consensus size: 26
35048252 TCTGGTCTGA
35048262 GCTTAGACTAGGAATGAACTCCGTAT
1 GCTTAGACTAGGAATGAACTCCGTAT
35048288 GCTTAGAC-ATGGAATGAACTCCGTAT
1 GCTTAGACTA-GGAATGAACTCCGTAT
35048314 GC
1 GC
35048316 ATAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 26 0.96
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (26 bp):
GCTTAGACTAGGAATGAACTCCGTAT
Found at i:35048398 original size:196 final size:196
Alignment explanation
Indices: 35047895--35048413 Score: 580
Period size: 196 Copynumber: 2.6 Consensus size: 196
35047885 TCCGGTTGGG
* * *
35047895 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACTCACGAAATGAGCGTGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAA
* * * * * * ** *
35047960 CC-AGCCGGAGAGGCAGAATGCACAAG-TCGAGGATCGGCCCAGTCCGAACCTGCGTGCTACCGA
66 CCGA-CCGAAGAGGCAAAATGCGCAAGCT-GGGGTTCGGCCCGGTCC-CCCCTGCGTGCTGCCGA
* * * *
35048023 TCCTATCGCTGGTCCTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCC
128 TCCTATCGCTGGTCCTACTACCGCAACCCTCGATCCGGTCCGAGCTTAGACTAGGAATGAACTCC
35048088 GTAT
193 GTAT
* * * * * * **
35048092 GCTTAGACATGGAATGAACTTCATAAGCCTAAGCCAACCAATGAAACGAGCGTACGGGCACTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAA
* * * * *
35048157 CCGACCGAAGAGGCAAAATGCGCAAGCCAGGGATT-GGCTCGGTCCCCCCTACGTGCTGTCGAT-
66 CCGACCGAAGAGGCAAAATGCGCAAG-CTGGGGTTCGGCCCGGTCCCCCCTGCGTGCTGCCGATC
* * * *
35048220 CT-TGCTGCTGGTCCTATTACCGTAACCCTCGATCTGGTCTGAGCTTAGACTAGGAATGAACTCC
130 CTAT-C-GCTGGTCCTACTACCGCAACCCTCGATCCGGTCCGAGCTTAGACTAGGAATGAACTCC
35048284 GTAT
193 GTAT
* * * *
35048288 GCTTAGACATGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGTGCTGAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAA
* * *
35048353 CCGACCAAAGAGGCATAATGCGCAAGCTGGGGTTCAGCCCGGTCCCCCTCTGCGTGCTGCC
66 CCGACCGAAGAGGCAAAATGCGCAAGCTGGGGTTCGGCCCGGTCCCCC-CTGCGTGCTGCC
35048414 AGTCCCGCTG
Statistics
Matches: 262, Mismatches: 53, Indels: 14
0.80 0.16 0.04
Matches are distributed among these distances:
194 1 0.00
195 9 0.03
196 155 0.59
197 93 0.35
198 4 0.02
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.20
Consensus pattern (196 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAA
CCGACCGAAGAGGCAAAATGCGCAAGCTGGGGTTCGGCCCGGTCCCCCCTGCGTGCTGCCGATCC
TATCGCTGGTCCTACTACCGCAACCCTCGATCCGGTCCGAGCTTAGACTAGGAATGAACTCCGTA
T
Found at i:35048681 original size:157 final size:158
Alignment explanation
Indices: 35048288--35049036 Score: 703
Period size: 159 Copynumber: 4.7 Consensus size: 158
35048278 AACTCCGTAT
* *
35048288 GCTTAGACATGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGTGCTGAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAG
* ** ** * * * *
35048353 CCGACCAAAGAGGCATAATGCGCAAGCTGGGGTTCAGCCCGGTCCCCCTCTGCGTGCTGCC-AGT
66 CCGGCTGAAGAGGCATAATGCGCAAGCCAGGGATCGGCCCGAT-CCCCTCTGCATGCTGCCGA-T
* *
35048417 CCCGCTGCCACAACCCTCG-GCCTGGCTGGG
129 CCCGCTGCCACAACCCTCGATCC-GGCTGGA
* * * * * * *
35048447 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGAGTGGCCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAG
* * * *
35048512 CCGG-TCGGAGAGGCAGAATGCACAAGCCAGGGATCGGCCCGATCCCCTCTGCATGCTACCGATC
66 CCGGCT-GAAGAGGCATAATGCGCAAGCCAGGGATCGGCCCGATCCCCTCTGCATGCTGCCGATC
* * * * *
35048576 CTGCTATCGA-AACCCTCG-TACAGTCT-GA
130 CCGCT-GCCACAACCCTCGAT-CCGGCTGGA
* * * *
35048604 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACTAGCGTGTGGGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGA
** * * *
35048668 GCCAACTGAAGAGGCATAATGCGCAAGCCAGGGATCGGCTCGATCCCCTTCTGCATGCTGTCGGT
65 GCCGGCTGAAGAGGCATAATGCGCAAGCCAGGGATCGGCCCGATCCCC-TCTGCATGCTGCCGAT
*
35048733 CCCGCTGCCACAACCCTCGATCCGGCTGGG
129 CCCGCTGCCACAACCCTCGATCCGGCTGGA
* * * * *
35048763 GCTTAGACATGGAATGAACTCCCTATGCCTAAG-CTAACCCATGAAACGGGAGTGCGGGCGCTAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGTC-AACCCACGAAACGAGCGTGCGGGCGCTGA
* * * ** * * *
35048827 GCCGGCCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGATCCCC-CTTACGTGCTGTCGAT
65 GCCGGCTGAAGAGGCATAATGCGCAAGCCAGGGATCGGCCCGATCCCCTC-TGCATGCTGCCGAT
*** * * * * *
35048891 CCTATTGTCGCAACCCTTGATCC-GATCCGA
129 CCCGCTGCCACAACCCTCGATCCGGCT-GGA
* * *
35048921 TCTTAGAC-TGGGAATGAACT-CGTATGCATAAGTCAACCCACGAAACGAGCTTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGA
* * * *
35048984 GCCGGCTGAAGAGGTATAATGCACAAGCCAAGGATCGGCCCGGTCCCCTCTGC
65 GCCGGCTGAAGAGGCATAATGCGCAAGCCAGGGATCGGCCCGATCCCCTCTGC
35049037 GTGTTGTCGA
Statistics
Matches: 473, Mismatches: 100, Indels: 36
0.78 0.16 0.06
Matches are distributed among these distances:
156 1 0.00
157 175 0.37
158 112 0.24
159 184 0.39
160 1 0.00
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAG
CCGGCTGAAGAGGCATAATGCGCAAGCCAGGGATCGGCCCGATCCCCTCTGCATGCTGCCGATCC
CGCTGCCACAACCCTCGATCCGGCTGGA
Found at i:35048863 original size:316 final size:316
Alignment explanation
Indices: 35048289--35049045 Score: 1013
Period size: 316 Copynumber: 2.4 Consensus size: 316
35048279 ACTCCGTATG
35048289 CTTAGACAT-GGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGTGCTGAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGTGCTGAG
** ** * * * *
35048353 CCGACCAAAGAGGCATAATGCGCAAGCTGGGGTTCAGCCCGGTCCCCCTCTGCGTGCTGCCAGTC
65 CCGACTGAAGAGGCATAATGCGCAAGCCAGGGATCGGCCCGGT-CCCCTCTGCGTGCTGTCGGTC
35048418 CCGCTGCCACAACCCTCGGCCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
129 CCGCTGCCACAACCCTCGGCCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
* * * *
35048483 ACCCACGAAACGGGCGAGTGGCCGCTCAGCCGGTCGGAGAGGCAGAATGCACAAGCCAGGGATCG
194 ACCCACGAAACGGGAGAGCGGCCGCTAAGCCGGCCGGAGAGGCAGAATGCACAAGCCAGGGATCG
* * *
35048548 GCCCGAT-CCCCTCTGCATGCTACCGATCCTGCTATCGAAACCCTCG-TACAG-TCTGAT
259 GCCCGATCCCCCT-TACATGCTACCGATCCTACTATCGAAACCCTCGAT-CAGATCCGAT
* * *
35048605 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACTAGCGTGTGGGTGCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGTGCTGAGC
* * * *
35048670 CAACTGAAGAGGCATAATGCGCAAGCCAGGGATCGGCTCGATCCCCTTCTGCATGCTGTCGGTCC
66 CGACTGAAGAGGCATAATGCGCAAGCCAGGGATCGGCCCGGTCCCC-TCTGCGTGCTGTCGGTCC
* *
35048735 CGCTGCCACAACCCTCGATCC-GGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCTA
130 CGCTGCCACAACCCTCG-GCCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
* * * * **
35048799 ACCCATGAAACGGGAGTGCGGGCGCTAAGCCGGCCGGAGAGGCAGAATGCGCAAGCTGGGGATCG
194 ACCCACGAAACGGGAGAGCGGCCGCTAAGCCGGCCGGAGAGGCAGAATGCACAAGCCAGGGATCG
* ** * * * * *
35048864 GCCCGATCCCCCTTACGTGCTGTCGATCCTATTGTCGCAACCCTTGATCCGATCCGAT
259 GCCCGATCCCCCTTACATGCTACCGATCCTACTATCGAAACCCTCGATCAGATCCGAT
* *
35048922 CTTAGACTGGGAATGAACT-CGTATGCATAAGTCAACCCACGAAACGAGCTTGCGGGCGCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGTGCTGAGC
* * * * *
35048986 CGGCTGAAGAGGTATAATGCACAAGCCAAGGATCGGCCCGGTCCCCTCTGCGTGTTGTCG
66 CGACTGAAGAGGCATAATGCGCAAGCCAGGGATCGGCCCGGTCCCCTCTGCGTGCTGTCG
35049046 ATCCTACTGC
Statistics
Matches: 383, Mismatches: 52, Indels: 13
0.85 0.12 0.03
Matches are distributed among these distances:
315 17 0.04
316 334 0.87
317 32 0.08
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.18
Consensus pattern (316 bp):
CTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGTGCTGAGC
CGACTGAAGAGGCATAATGCGCAAGCCAGGGATCGGCCCGGTCCCCTCTGCGTGCTGTCGGTCCC
GCTGCCACAACCCTCGGCCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
CCACGAAACGGGAGAGCGGCCGCTAAGCCGGCCGGAGAGGCAGAATGCACAAGCCAGGGATCGGC
CCGATCCCCCTTACATGCTACCGATCCTACTATCGAAACCCTCGATCAGATCCGAT
Found at i:35049045 original size:157 final size:157
Alignment explanation
Indices: 35048288--35049055 Score: 719
Period size: 157 Copynumber: 4.9 Consensus size: 157
35048278 AACTCCGTAT
* *
35048288 GCTTAGACATGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGTGCTGAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAG
* ** ** * * * *
35048353 CCGACCAAAGAGGCATAATGCGCAAGCTGGGGTTCAGCCCGGTCCCCCTCTGCGTGCTG-CCAGT
66 CCGGCTGAAGAGGCATAATGCGCAAGCCAGGGATCGGCCCGAT-CCCCTCTGCGTGCTGTCGA-T
* * *
35048417 CCCGCTGCCACAACCCTCGGCCTGGCTGGG
129 CCTGCTGCCACAACCCTCGTCC-GGCTGGA
* * * * * * *
35048447 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGAGTGGCCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAG
* * * * **
35048512 CCGG-TCGGAGAGGCAGAATGCACAAGCCAGGGATCGGCCCGATCCCCTCTGCATGCTACCGATC
66 CCGGCT-GAAGAGGCATAATGCGCAAGCCAGGGATCGGCCCGATCCCCTCTGCGTGCTGTCGATC
* * * *
35048576 CTGCTATCGA-AACCCTCGTACAGTCT-GA
130 CTGCT-GCCACAACCCTCGT-CCGGCTGGA
* * * *
35048604 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACTAGCGTGTGGGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGA
** * * *
35048668 GCCAACTGAAGAGGCATAATGCGCAAGCCAGGGATCGGCTCGATCCCCTTCTGCATGCTGTCGGT
65 GCCGGCTGAAGAGGCATAATGCGCAAGCCAGGGATCGGCCCGATCCCC-TCTGCGTGCTGTCGAT
* *
35048733 CCCGCTGCCACAACCCTCGATCCGGCTGGG
129 CCTGCTGCCACAACCCTCG-TCCGGCTGGA
* * * * *
35048763 GCTTAGACATGGAATGAACTCCCTATGCCTAAG-CTAACCCATGAAACGGGAGTGCGGGCGCTAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGTC-AACCCACGAAACGAGCGTGCGGGCGCTGA
* * * ** *
35048827 GCCGGCCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGATCCCC-CTTACGTGCTGTCGAT
65 GCCGGCTGAAGAGGCATAATGCGCAAGCCAGGGATCGGCCCGATCCCCTC-TGCGTGCTGTCGAT
** * * * * *
35048891 CCTATTGTCGCAACCCTTGATCC-GATCCGA
129 CCTGCTGCCACAACCCTCG-TCCGGCT-GGA
* * *
35048921 TCTTAGAC-TGGGAATGAACT-CGTATGCATAAGTCAACCCACGAAACGAGCTTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGA
* * * * *
35048984 GCCGGCTGAAGAGGTATAATGCACAAGCCAAGGATCGGCCCGGTCCCCTCTGCGTGTTGTCGATC
65 GCCGGCTGAAGAGGCATAATGCGCAAGCCAGGGATCGGCCCGATCCCCTCTGCGTGCTGTCGATC
*
35049049 CTACTGC
130 CTGCTGC
35049056 TGGTCTTACT
Statistics
Matches: 488, Mismatches: 104, Indels: 36
0.78 0.17 0.06
Matches are distributed among these distances:
156 1 0.00
157 191 0.39
158 110 0.23
159 185 0.38
160 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAG
CCGGCTGAAGAGGCATAATGCGCAAGCCAGGGATCGGCCCGATCCCCTCTGCGTGCTGTCGATCC
TGCTGCCACAACCCTCGTCCGGCTGGA
Found at i:35049121 original size:26 final size:26
Alignment explanation
Indices: 35049092--35049141 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
35049082 CGGTCTGAGC
*
35049092 TTAGAC-TAGGAATGAACTCTGTATGT
1 TTAGACAT-GGAATGAACTCCGTATGT
*
35049118 TTAGACATGGAATGTACTCCGTAT
1 TTAGACATGGAATGAACTCCGTAT
35049142 TCCTAAGCCA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
26 20 0.95
27 1 0.05
ACGTcount: A:0.30, C:0.14, G:0.22, T:0.34
Consensus pattern (26 bp):
TTAGACATGGAATGAACTCCGTATGT
Found at i:35049475 original size:157 final size:157
Alignment explanation
Indices: 35049118--35049925 Score: 594
Period size: 159 Copynumber: 5.1 Consensus size: 157
35049108 CTCTGTATGT
* * * * * * * * *
35049118 TTAGACAT-GGAATGTACTCCGTATTCCTAAGCCAACCCATGAAACAAGAGTGTGAGTGCTTAGC
1 TTAGAC-TGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTGAGC
* * * * * * * * *
35049182 CGACCGGAGAGGCAGAATGCGCAAGCCGGAGACCGGCCCGAAGCCACCCTGCGTGC-AGTCGATC
65 CGGCCGAAGAGGCAGAATGCACAAGCCGGGGATCGACCCG-ATCCCCCCTGCGTGCTA-CCG-TC
** * * * **
35049246 CTGCTACCACAACCCTCGGTCCGGTCT-GATC
127 CCACTGCCACAACCCTCGATCTGG-CTGGGGC
** * * *
35049277 TTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGTGCTGAGCT
1 TTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTGAGCC
* * *** *** * * *
35049342 GGCCGGAGAGGCATAATGTGTAAGCCGGGGATCGGTTCGGTCCCCTTCTGCGTGCTGCCAGTCCC
66 GGCCGAAGAGGCAGAATGCACAAGCCGGGGATCGACCCGATCCCC-CCTGCGTGCTACC-GTCCC
35049407 ACTGCCACAA-CC-CGATCTGGCTGGGGC
129 ACTGCCACAACCCTCGATCTGGCTGGGGC
* * * **
35049434 TTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGAGCGGCTGCCCAGC
1 TTAGAC-TGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTGAGC
** * * *
35049498 CGATCAAAGAGGGAGAATGCACAAGCCGGGGATC-AGCCCGATCCCCCCTGCATGCTACCGATCC
65 CGGCCGAAGAGGCAGAATGCACAAGCCGGGGATCGA-CCCGATCCCCCCTGCGTGCTACCG-TCC
* * ** * * **
35049562 TACTGTCGGAACCCTCG-TACAGTCT-GATC
128 CACTGCCACAACCCTCGAT-CTGGCTGGGGC
* * * * * **
35049591 TTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAATGAGTGTGCGGGCACTGAGCC
1 TTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTGAGCC
* * * ** * * *
35049656 AGCCGAAGAGGCATAATGCGCAAGCCAAGGATCGACCCCATCCCCCTTTGCGGGCTACCGGTCCC
66 GGCCGAAGAGGCAGAATGCACAAGCCGGGGATCGACCCGATCCCCC-CTGCGTGCTACC-GTCCC
* *
35049721 GCTGCTACAACCCTCGATCTGGCTGGGGC
129 ACTGCCACAACCCTCGATCTGGCTGGGGC
* * * *
35049750 TTAGACAT-GGAATGAATTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGTGCTTAGC
1 TTAGAC-TGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTGAGC
* * * * *
35049814 CGGCCGGAGAGGTAGAATGCACAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTGCCGATCCT
65 CGGCCGAAGAGGCAGAATGCACAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTACCG-TCCC
* * **
35049879 ACTACCGCAACCCTCGATCTGGTCT-GATC
129 ACTGCCACAACCCTCGATCTGG-CTGGGGC
35049908 TTAGACTGGGAATGAACT
1 TTAGACTGGGAATGAACT
35049926 TCGTATGCTT
Statistics
Matches: 498, Mismatches: 130, Indels: 43
0.74 0.19 0.06
Matches are distributed among these distances:
155 1 0.00
156 23 0.05
157 184 0.37
158 88 0.18
159 200 0.40
160 2 0.00
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (157 bp):
TTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTGAGCC
GGCCGAAGAGGCAGAATGCACAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTACCGTCCCAC
TGCCACAACCCTCGATCTGGCTGGGGC
Found at i:35049539 original size:669 final size:669
Alignment explanation
Indices: 35048449--35049689 Score: 1676
Period size: 669 Copynumber: 1.9 Consensus size: 669
35048439 TGGCTGGGGC
** *
35048449 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGAGTGGCCGCTCAGCC
1 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAAGAGAGTGGCCGCTCAGCC
** * *
35048514 GGTCGGAGAGGCAGAATGCACAAGCCAGGGATCGGCCCGATCCCCTCTGCATGCTACCGATCCTG
66 GACCGGAGAGGCAGAATGCACAAGCCAGGGACCGGCCCGAGCCCCTCTGCATGCTACCGATCCTG
*
35048579 CTATCGAAACCCTCGTACAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
131 CTATCCAAACCCTCGTACAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * *
35048644 ACGAAACTAGCGTGTGGGTGCTGAGCCAACTGAAGAGGCATAATGCGCAAGCCAGGGATCGGCTC
196 ACGAAACGAGCGTGCGGGTGCTGAGCCAACCGAAGAGGCATAATGCGCAAGCCAGGGATCGGCTC
* * *
35048709 GATCCCCTTCTGCATGCTGTCGGTCCCGCTGCCACAACCCTCGATCCGGCTGGGGCTTAGACATG
261 GATCCCCTTCTGCATGCTGCCAGTCCCACTGCCACAACCCTCGATCCGGCTGGGGCTTAGACATG
* * * * * **
35048774 GAATGAACTCCCTATGCCTAAGCTAACCCATGAAACGGGAGTGCGGGCGCTAAGCCGGCCGGAGA
326 GAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGAGAGCGGGCGCCAAGCCGACCAAAGA
* * * * * ** *
35048839 GGCAGAATGCGCAAGCTGGGGATCGGCCCGATCCCCCTTACGTGCTGTCGATCCTATTGTCGCAA
391 GGCAGAATGCACAAGCCGGGGATCAGCCCGATCCCCCCTACATGCTACCGATCCTACTGTCGCAA
* *
35048904 CCCTTG-ATCCGATCCGATCTTAGACTGGGAATGAAC-TCGTATGCATAAGTCAACCCACGAAAC
456 CCCTCGTA-CAG-TCCGATCTTAGACTGGGAATGAACTTCGTATGCATAAGTCAACCCACGAAAC
* * * *
35048967 GAGCT-TGCGGGCGCTGAGCCGGCTGAAGAGGTATAATGCACAAGCCAAGGATCGGCCCGGTCCC
519 GAG-TGTGCGGGCACTGAGCCAGCCGAAGAGGCATAATGCACAAGCCAAGGATCGGCCCGGTCCC
35049031 CTCTGCGTGTTGTCGATCCTACTGCTGGTCTTACTGCCATAACCCTCAGTCCGGTCTGAGCTTAG
583 CTCTGCGTGTTGTCGATCCTACTGCTGGTCTTACTGCCATAACCCTCAGTCCGGTCTGAGCTTAG
35049096 ACTAGGAATGAACTCTGTATGT
648 ACTAGGAATGAACTCTGTATGT
* * * * * * *
35049118 TTAGACATGGAATGTACTCCGTATTCCTAAGCCAACCCATGAAACAAGAGTGTGAG-TGCTTAGC
1 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAAGAGAGTG-GCCGCTCAGC
* * *
35049182 CGACCGGAGAGGCAGAATGCGCAAGCC-GGAGACCGGCCCGAAGCCACC-CTGCGTGC-AGTCGA
65 CGACCGGAGAGGCAGAATGCACAAGCCAGG-GACCGGCCCG-AGCC-CCTCTGCATGCTA-CCGA
* * *
35049244 TCCTGCTA-CCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAG
126 TCCTGCTATCCA-AACCCTC-GTACAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* *** * * * *
35049308 TCAACCCACGAAACGAGTGTGCGGGTGCTGAGCTGGCCGGAGAGGCATAATGTGTAAGCCGGGGA
189 TCAACCCACGAAACGAGCGTGCGGGTGCTGAGCCAACCGAAGAGGCATAATGCGCAAGCCAGGGA
* * * *
35049373 TCGGTTCGGTCCCCTTCTGCGTGCTGCCAGTCCCACTGCCACAA-CC-CGATCTGGCTGGGGCTT
254 TCGGCTCGATCCCCTTCTGCATGCTGCCAGTCCCACTGCCACAACCCTCGATCCGGCTGGGGCTT
* *
35049436 AGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGAGC-GGCTGCCCAGCCG
319 AGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGAGAGCGGGC-GCCAAGCCG
* * *
35049500 ATCAAAGAGGGAGAATGCACAAGCCGGGGATCAGCCCGATCCCCCCTGCATGCTACCGATCCTAC
383 ACCAAAGAGGCAGAATGCACAAGCCGGGGATCAGCCCGATCCCCCCTACATGCTACCGATCCTAC
* * *
35049565 TGTCGGAACCCTCGTACAGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCA
448 TGTCGCAACCCTCGTACAGTCCGATCTTAGACTGGGAATGAACTTCGTATGCATAAGTCAACCCA
* *
35049630 CGAAATGAGTGTGCGGGCACTGAGCCAGCCGAAGAGGCATAATGCGCAAGCCAAGGATCG
513 CGAAACGAGTGTGCGGGCACTGAGCCAGCCGAAGAGGCATAATGCACAAGCCAAGGATCG
35049690 ACCCCATCCC
Statistics
Matches: 491, Mismatches: 70, Indels: 22
0.84 0.12 0.04
Matches are distributed among these distances:
668 29 0.06
669 295 0.60
670 32 0.07
671 135 0.27
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.19
Consensus pattern (669 bp):
TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAAGAGAGTGGCCGCTCAGCC
GACCGGAGAGGCAGAATGCACAAGCCAGGGACCGGCCCGAGCCCCTCTGCATGCTACCGATCCTG
CTATCCAAACCCTCGTACAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
ACGAAACGAGCGTGCGGGTGCTGAGCCAACCGAAGAGGCATAATGCGCAAGCCAGGGATCGGCTC
GATCCCCTTCTGCATGCTGCCAGTCCCACTGCCACAACCCTCGATCCGGCTGGGGCTTAGACATG
GAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGAGAGCGGGCGCCAAGCCGACCAAAGA
GGCAGAATGCACAAGCCGGGGATCAGCCCGATCCCCCCTACATGCTACCGATCCTACTGTCGCAA
CCCTCGTACAGTCCGATCTTAGACTGGGAATGAACTTCGTATGCATAAGTCAACCCACGAAACGA
GTGTGCGGGCACTGAGCCAGCCGAAGAGGCATAATGCACAAGCCAAGGATCGGCCCGGTCCCCTC
TGCGTGTTGTCGATCCTACTGCTGGTCTTACTGCCATAACCCTCAGTCCGGTCTGAGCTTAGACT
AGGAATGAACTCTGTATGT
Found at i:35049733 original size:314 final size:317
Alignment explanation
Indices: 35049118--35049933 Score: 921
Period size: 316 Copynumber: 2.6 Consensus size: 317
35049108 CTCTGTATGT
* * * * ** * * * **
35049118 TTAGACATGGAATGTACTCCGTATTCCTAAGCCAACCCATGAAACAAGAGTGTGAG-TGCTTAGC
1 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGAGCG-GCTGCCCAGC
** * * * * * * * * *
35049182 CGACCGGAGAGGCAGAATGCGCAAGCCGGAGACCGGCCCGAAGCCACCCTGCGTGC-AGTCGATC
65 CGACCAAAGAGGGAGAATGCACAAGCCGGGGATCGACCCG-ATCCCCCCTGCATGCTA-CCGATC
* * * **
35049246 CTGCTACCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAAC-TCTGTATGCCTAAGTC
128 CTACTACCGCAACCCTCGATCTAGTCTGATCTTAGACTGGGAATGAACTTC-GTATGCCTAAGTC
** ** * * * **
35049310 AACCCACGAAACGAGTGTGCGGGTGCTGAGCTGGCCGGAGAGGCATAATGTGTAAGCCGGGGATC
192 AACCCACGAAACGAGTGTGCGGGCACTGAGCCAGCCGAAGAGGCATAATGCGCAAGCCAAGGATC
*** ** * *
35049375 GGTTCGGTCCCCTTCTGCGTGCTGCCAGTCCCACTGCCACAA-CC-CGATCTGGCTGGGGC
257 GACCCCATCCCCTTCTGCGGGCTACCAGTCCCACTGCCACAACCCTCGATCTGGCTGGGGC
35049434 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGAGCGGCTGCCCAGCC
1 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGAGCGGCTGCCCAGCC
*
35049499 GATCAAAGAGGGAGAATGCACAAGCCGGGGATC-AGCCCGATCCCCCCTGCATGCTACCGATCCT
66 GACCAAAGAGGGAGAATGCACAAGCCGGGGATCGA-CCCGATCCCCCCTGCATGCTACCGATCCT
** *
35049563 ACTGTCGGAACCCTCG-TAC-AGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAA
130 ACTACCGCAACCCTCGAT-CTAGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAA
*
35049626 CCCACGAAATGAGTGTGCGGGCACTGAGCCAGCCGAAGAGGCATAATGCGCAAGCCAAGGATCGA
194 CCCACGAAACGAGTGTGCGGGCACTGAGCCAGCCGAAGAGGCATAATGCGCAAGCCAAGGATCGA
* * *
35049691 CCCCATCCCCCTT-TGCGGGCTACCGGTCCCGCTGCTACAACCCTCGATCTGGCTGGGGC
259 CCCCAT-CCCCTTCTGCGGGCTACCAGTCCCACTGCCACAACCCTCGATCTGGCTGGGGC
* * * * **
35049750 TTAGACATGGAATGAATTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGTGCTTAGCC
1 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGAGCGGCTGCCCAGCC
* ** * * * *
35049815 GGCCGGAGAGGTAGAATGCACAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTGCCGATCCTA
66 GACCAAAGAGGGAGAATGCACAAGCCGGGGATCGACCCGATCCCCCCTGCATGCTACCGATCCTA
*
35049880 CTACCGCAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTTCGTATGC
131 CTACCGCAACCCTCGATCTAGTCTGATCTTAGACTGGGAATGAACTTCGTATGC
35049934 TTAGACTGGG
Statistics
Matches: 422, Mismatches: 67, Indels: 21
0.83 0.13 0.04
Matches are distributed among these distances:
314 119 0.28
315 42 0.10
316 225 0.53
317 36 0.09
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (317 bp):
TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGAGCGGCTGCCCAGCC
GACCAAAGAGGGAGAATGCACAAGCCGGGGATCGACCCGATCCCCCCTGCATGCTACCGATCCTA
CTACCGCAACCCTCGATCTAGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACC
CACGAAACGAGTGTGCGGGCACTGAGCCAGCCGAAGAGGCATAATGCGCAAGCCAAGGATCGACC
CCATCCCCTTCTGCGGGCTACCAGTCCCACTGCCACAACCCTCGATCTGGCTGGGGC
Found at i:35049788 original size:828 final size:828
Alignment explanation
Indices: 35048092--35049987 Score: 1812
Period size: 828 Copynumber: 2.3 Consensus size: 828
35048082 AACTCCGTAT
* * * * * *
35048092 GCTTAGACATGGAATGAACTTCATAAGCCTAAGCCAACCAATGAAACGAGCGTACGGGCACTCAA
1 GCTTAGACATGGAATGAA-TTCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * *
35048157 CCGACCGAAGAGGCAAAATGCGCAAGCCAGGGATTGGCTCGGTCCCCCCTACGTGCTGTCGATCT
65 CCGGCCGAAGAGGTAAAATGCACAAGCCAGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCC
* * * *
35048222 TGCTGCTGGTCCTATTACCGTAACCCTCGATCTGGTCTGAGCTTAGACTAGGAATGAACTCCGTA
130 TACTGCTGGTCCTACTACCATAACCCTCGATCCGGTCTGAGCTTAGACTAGGAATGAACTCCGTA
* * * *
35048287 TGCTTAGACATGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGTGCTGA
195 TGCTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACAAGAGTGCGAGTGCTGA
* * * ** * *
35048352 GCCGACCAAAGAGGCATAATGCGCAAGCTGGGGTTCAGCCCGGTCCCCCTCTGCGTGCTGCCAGT
260 GCCGACCAAAGAGGCAGAATGCGCAAGCCGGAGACCAGCCCGGTCCACCTCTGCGTGCAGCCAGT
* *
35048417 CCCGCTGCCACAACCCTCGGCCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCC
325 CCCGCTACCACAACCCTCGGCCTGGCTGGAGCTTAGACATGGAATGAACTCCCTATGCCTAAGCC
* * *
35048482 AACCCACGAAACGGGCGAGTGGCCGCTCAGCCGGTCGGAGAGGCAGAATGCACAAGCCAGGGATC
390 AACCCACGAAACGAGCGAGCGGCCGCTCAGCCGGCCGGAGAGGCAGAATGCACAAGCCAGGGATC
** * * * *
35048547 GGCCCGATCCCCTCTGCATGCTACCGATCCTGCTATCGAAACCCTCGTACAGTCTGATCTTAGAC
455 GGCCCGATCCCCTCTGCATGCTACCGATCCCACTAGCCAAACCCTCGTACAGGCTGAGCTTAGAC
* * * * * * ** *
35048612 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACTAGCGTGTGGGTGCTGAGCCAACTGA
520 TGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGAGCGGCTGCCCAGCCAACTAA
* * * * * ** * *
35048677 AGAGGCATAATGCGCAAGCCAGGGATCGGCTCGATCCCCTTCTGCATGCTGTCGGTCCCGCTGCC
585 AGAGGCAGAATGCACAAGCCAGGGATCAGCCCGATCCCCTCCTGCATGCTACCGATCCCACTGCC
* * *
35048742 ACAACCCTCGATCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCTAACCCATGA
650 ACAACCCTCGATCAGGCTGGAGCTTAGACATGGAATGAACTCCCTATGCCTAAGCTAACCCACGA
* * * * *** * *
35048807 AACGGGAGTGCGGGCGCTAAGCCGGCCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGATC
715 AACGAGAGTGCGGGCACTAAGCCAGCCGAAGAGGCAGAATGCGCAAGCCAAGGATCGACCCCATC
* ** * * * *
35048872 CCCCTTACGTGCTGTCGATCCTATTGTCGCAACCCTTGATCCGATCCGA
780 CCCCTTACGGGCTACCGATCCCACTGTCACAACCCTCGATCCGATCCGA
* * * * * * *
35048921 TCTTAGAC-TGGGAATGAACTCGTATGCATAAGTCAACCCACGAAACGAGCTTGCGGGCGCTGAG
1 GCTTAGACAT-GGAATGAATTCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * *
35048985 CCGGCTGAAGAGGTATAATGCACAAGCCAAGGATCGGCCCGGTCCCCTCTGCGTGTTGTCGATCC
65 CCGGCCGAAGAGGTAAAATGCACAAGCCAGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCC
* * *
35049050 TACTGCTGGTCTTACTGCCATAACCCTC-AGTCCGGTCTGAGCTTAGACTAGGAATGAACTCTGT
130 TACTGCTGGTCCTACTACCATAACCCTCGA-TCCGGTCTGAGCTTAGACTAGGAATGAACTCCGT
* * * * * * *
35049114 ATGTTTAGACATGGAATGTACTCCGTATTCCTAAGCCAACCCATGAAACAAGAGTGTGAGTGCTT
194 ATGCTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACAAGAGTGCGAGTGCTG
** * *
35049179 AGCCGACCGGAGAGGCAGAATGCGCAAGCCGGAGACCGGCCCGAAG-CCACC-CTGCGTGCAGTC
259 AGCCGACCAAAGAGGCAGAATGCGCAAGCCGGAGACCAGCCCG--GTCCACCTCTGCGTGCAGCC
* * **
35049242 -GATCCTGCTACCACAACCCTCGGTCC-GGTCT-GATCTTAGAC-TGGGAATGAACTCTGTATGC
322 AG-TCCCGCTACCACAACCCTCGG-CCTGG-CTGGAGCTTAGACAT-GGAATGAACTCCCTATGC
* * * ** * * * ***
35049303 CTAAGTCAACCCACGAAACGAGTGTGCGGGTGCTGAGCTGGCCGGAGAGGCATAATGTGTAAGCC
383 CTAAGCCAACCCACGAAACGAGCGAGCGGCCGCTCAGCCGGCCGGAGAGGCAGAATGCACAAGCC
* ** * * * *
35049368 GGGGATCGGTTCGGTCCCCTTCTGCGTGCTGCC-AGTCCCACT-GCCACAA-CC-CG-ATCTGGC
448 AGGGATCGGCCCGATCCCC-TCTGCATGCTACCGA-TCCCACTAGCCA-AACCCTCGTA-CAGGC
* *
35049428 TGGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGAGCGGCTG
509 T-GAGCTTAGAC-TGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGAGCGGCTG
* * *
35049492 CCCAGCCGA-TCAAAGAGGGAGAATGCACAAGCCGGGGATCAGCCCGATCCCC-CCTGCATGCTA
572 CCCAGCCAACT-AAAGAGGCAGAATGCACAAGCCAGGGATCAGCCCGATCCCCTCCTGCATGCTA
* * ** * * * *
35049555 CCGATCCTACTGTCGGAACCCTCG-TACAGTCT-GATCTTAGAC-TGGGAATGAACTTCGTATGC
636 CCGATCCCACTGCCACAACCCTCGAT-CAGGCTGGAGCTTAGACAT-GGAATGAACTCCCTATGC
* * * *
35049617 CTAAG-TCAACCCACGAAATGAGTGTGCGGGCACTGAGCCAGCCGAAGAGGCATAATGCGCAAGC
699 CTAAGCT-AACCCACGAAACGAGAGTGCGGGCACTAAGCCAGCCGAAGAGGCAGAATGCGCAAGC
* * * * *
35049681 CAAGGATCGACCCCATCCCCCTTTGCGGGCTACCGGTCCCGCTG-CTACAACCCTCGATCTG-GC
763 CAAGGATCGACCCCATCCCCC-TTACGGGCTACCGATCCCACTGTC-ACAACCCTCGATCCGATC
* *
35049744 TGGG
826 -CGA
* * * * *
35049748 GCTTAGACATGGAATGAATTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGTGCTTAG
1 GCTTAGACATGGAATGAATT-CATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * *
35049813 CCGGCCGGAGAGGTAGAATGCACAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTGCCGATCC
65 CCGGCCGAAGAGGTAAAATGCACAAGCCAGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCC
* * * *
35049878 TA---------CTAC--CGC--AACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTTCGT
130 TACTGCTGGTCCTACTAC-CATAACCCTCGATCCGGTCTGAGCTTAGACTAGGAATGAACTCCGT
* * * * *
35049930 ATGCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCG
194 ATGCTTAGACAT-GGAATGAACTCCGTATGCATAAGCCAACCCACGAAACAAGAGTGCG
35049988 GGCACCCAGT
Statistics
Matches: 859, Mismatches: 182, Indels: 65
0.78 0.16 0.06
Matches are distributed among these distances:
815 1 0.00
816 83 0.10
817 2 0.00
818 1 0.00
819 3 0.00
825 2 0.00
826 97 0.11
827 83 0.10
828 544 0.63
829 42 0.05
830 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (828 bp):
GCTTAGACATGGAATGAATTCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCGAAGAGGTAAAATGCACAAGCCAGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCT
ACTGCTGGTCCTACTACCATAACCCTCGATCCGGTCTGAGCTTAGACTAGGAATGAACTCCGTAT
GCTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACAAGAGTGCGAGTGCTGAG
CCGACCAAAGAGGCAGAATGCGCAAGCCGGAGACCAGCCCGGTCCACCTCTGCGTGCAGCCAGTC
CCGCTACCACAACCCTCGGCCTGGCTGGAGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
ACCCACGAAACGAGCGAGCGGCCGCTCAGCCGGCCGGAGAGGCAGAATGCACAAGCCAGGGATCG
GCCCGATCCCCTCTGCATGCTACCGATCCCACTAGCCAAACCCTCGTACAGGCTGAGCTTAGACT
GGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGAGCGGCTGCCCAGCCAACTAAA
GAGGCAGAATGCACAAGCCAGGGATCAGCCCGATCCCCTCCTGCATGCTACCGATCCCACTGCCA
CAACCCTCGATCAGGCTGGAGCTTAGACATGGAATGAACTCCCTATGCCTAAGCTAACCCACGAA
ACGAGAGTGCGGGCACTAAGCCAGCCGAAGAGGCAGAATGCGCAAGCCAAGGATCGACCCCATCC
CCCTTACGGGCTACCGATCCCACTGTCACAACCCTCGATCCGATCCGA
Found at i:35049943 original size:26 final size:26
Alignment explanation
Indices: 35049907--35049959 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
35049897 CTGGTCTGAT
*
35049907 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
35049933 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35049959 C
1 C
35049960 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35050920 original size:159 final size:160
Alignment explanation
Indices: 35050630--35051132 Score: 493
Period size: 159 Copynumber: 3.2 Consensus size: 160
35050620 ACTCCATATG
* * *
35050630 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTACGGGCGCTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAAC
* * * * * * *
35050695 CGGCCGGAGAGGTAGAATACGCAAGCTGGGGA-TCGATCGAGTCCCCCCCTG-CGTGCTGTCGAT
66 CGGCCGGAGAGGCAGAATGCACAAGTTGGGGATTAGCTCG-GT-CCCCCCTGACGTGCTGCCGAT
*
35050758 CCTGCTGTCACAACCCTCGGTCCGGTCT-GAT
129 CCTGCTGACACAACCCTCGGTCCGGTCTCGAT
* * * *
35050789 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGTGTGCGGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAA
* * * *
35050853 CCGGCCGGAGAGGCATAATGCACAAGTTGGGGATTGGCTCGGTCCCCCTTGACGTGCTGCCGGTC
65 CCGGCCGGAGAGGCAGAATGCACAAGTTGGGGATTAGCTCGGTCCCCCCTGACGTGCTGCCGATC
* * * **
35050918 CTGCTGCCACAACCCTCGGTCCAG-CTGGGG
130 CTGCTGACACAACCCTCGGTCCGGTCTCGAT
* * * * * * *
35050948 CATAGACATGGAATGAACTCCCTAAGCCTAAGCCAACCCGTGAAATGGGCATGCGGGCGCTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAAC
*** * * * * * *
35051013 CATTCGGACAAGCAGAATGCACAAGTTAGGGATCAGCCCGGTCCCCCCT-ACGTGCTACCGATCC
66 CGGCCGGAGAGGCAGAATGCACAAGTTGGGGATTAGCTCGGTCCCCCCTGACGTGCTGCCGATCC
* * * *
35051077 TACT-ACTGCAACCCTCGGTACGGT-TCAAT
131 TGCTGAC-ACAACCCTCGGTCCGGTCTCGAT
*
35051106 CTTAGAC-TAGGAATGAACTCTGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
35051133 TTAGACTAGG
Statistics
Matches: 278, Mismatches: 58, Indels: 17
0.79 0.16 0.05
Matches are distributed among these distances:
157 2 0.01
158 61 0.22
159 209 0.75
160 6 0.02
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (160 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAAC
CGGCCGGAGAGGCAGAATGCACAAGTTGGGGATTAGCTCGGTCCCCCCTGACGTGCTGCCGATCC
TGCTGACACAACCCTCGGTCCGGTCTCGAT
Found at i:35051142 original size:26 final size:26
Alignment explanation
Indices: 35051106--35051158 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
35051096 ACGGTTCAAT
* *
35051106 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAAATCCGTATG
*
35051132 CTTAGACTAGGGATGAAATCCGTATG
1 CTTAGACTAGGAATGAAATCCGTATG
35051158 C
1 C
35051159 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAAATCCGTATG
Found at i:35051864 original size:26 final size:26
Alignment explanation
Indices: 35051826--35051878 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
35051816 GGCTCAAAAT
35051826 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35051852 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
35051878 C
1 C
35051879 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35052378 original size:26 final size:26
Alignment explanation
Indices: 35052327--35052379 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
35052317 CCGGTTCGAT
*
35052327 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
35052353 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
35052379 C
1 C
35052380 CTAAGTCAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:35052737 original size:26 final size:26
Alignment explanation
Indices: 35052708--35052760 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
35052698 CCGGTCCAAT
*
35052708 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
*
35052734 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
35052760 C
1 C
35052761 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:35053035 original size:159 final size:159
Alignment explanation
Indices: 35052734--35053236 Score: 509
Period size: 159 Copynumber: 3.2 Consensus size: 159
35052724 ACTCCGTATG
* *
35052734 CTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCA-CTCAG
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGG-AGCTCAG
* * * * * *
35052798 TCGATCGGAGAGGCAAAATGCACAAGCCGAGGATCGACCCGGTCCCCC-CTTACGTGC-GATCGA
65 CCGATCGGAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTC-TGCGTGCTG-TCGA
*
35052861 TCCTGCTGCTGCAACCCTCGGTCCGGTCTGAT
128 TCCTGCTGCCGCAACCCTCGGTCCGGTCTGAT
* * * *
35052893 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACACATGAAACGAGCCTGCGGGAGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGAGCTCAG
** *
35052957 CCGATCGGAGAGGCATAATGCGCAAGCCGGGGATCGGCCCAATCCCCCTCTGCGTGCTGTCGGT-
65 CCGATCGGAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGATC
* * ** **
35053021 CTCGCCGCCACAACCCTCGGTGTGG-CTGGGG
130 CT-GCTGCCGCAACCCTCGGTCCGGTCT-GAT
* * * * * * *
35053052 CTTAGACATGGAATGAACTCCCTATGCCTTAGCCAGCCCGTGAAACGGGTGTGCGGGTGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGAGCTCAGC
* * * * * ** * *
35053117 CGATCGGAGAGGCATAATGTGCAAGCTGGCGATCGGTCTGGTTTCCCT-TGAGTGCTATCGATCC
66 CGATCGGAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGATCC
* * *
35053181 TGCTACCGTAACCCTCAGTCCGGTCTGAT
131 TGCTGCCGCAACCCTCGGTCCGGTCTGAT
*
35053210 CTTAGAC-TGGGAACGAACTCCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
35053237 TTAGACTGGG
Statistics
Matches: 278, Mismatches: 56, Indels: 21
0.78 0.16 0.06
Matches are distributed among these distances:
157 1 0.00
158 56 0.20
159 218 0.78
160 3 0.01
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.20
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGAGCTCAGC
CGATCGGAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGATCC
TGCTGCCGCAACCCTCGGTCCGGTCTGAT
Found at i:35053239 original size:26 final size:26
Alignment explanation
Indices: 35053210--35053262 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
35053200 CCGGTCTGAT
35053210 CTTAGACTGGGAACGAACTCCGTATG
1 CTTAGACTGGGAACGAACTCCGTATG
* *
35053236 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAACGAACTCCGTATG
35053262 C
1 C
35053263 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAACGAACTCCGTATG
Found at i:35054247 original size:157 final size:156
Alignment explanation
Indices: 35053968--35054311 Score: 361
Period size: 157 Copynumber: 2.2 Consensus size: 156
35053958 GCTTAGAAAT
* * * **
35053968 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGTGCTCAGACGGTCGGAG
1 GGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCATACGGGTGCTCAGACGGCCAAAG
* * **
35054033 AGGCAGAATAAGCAAGTCGAGGATCGGAACGGTCCCCCTCTGCGTGCTGTTGATCCTGCTGCCAC
66 AGGCAGAAT-AGCAAGCCGAGGATCGGAACAGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCAC
35054098 AACCTCAGTTCGATCGATCTTAGACTG
130 AACCTCAGTTCGATCGATCTTAGACTG
* * * * * * *
35054125 GGAATGAACTTCGTATGCATAAGTCAACCCACGAAATGAGCGTACGGGTGCTGAGCCTGCCAAAG
1 GGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCATACGGGTGCTCAGACGGCCAAAG
* ** * *
35054190 AGGCATAAT-GCACAGGCCGAGGATCGGCCCAGTCCCCCTCTGCGTGCTGCCGGTCCTGTTGCCA
66 AGGCAGAATAGCA-A-GCCGAGGATCGGAACAGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCA
* * **
35054254 CAACCCTC-GGTCTGACTGGGGCTTAGACAT-
129 CAA-CCTCAGTTC-GA-TCGATCTTAGAC-TG
* *
35054284 GGAATGAACTCCCTATGCCTAAGCCAAC
1 GGAATGAACTCCGTATGCATAAGCCAAC
35054312 TCACAAAATC
Statistics
Matches: 152, Mismatches: 29, Indels: 10
0.80 0.15 0.05
Matches are distributed among these distances:
155 3 0.02
156 1 0.01
157 108 0.71
158 6 0.04
159 33 0.22
160 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.19
Consensus pattern (156 bp):
GGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCATACGGGTGCTCAGACGGCCAAAG
AGGCAGAATAGCAAGCCGAGGATCGGAACAGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACA
ACCTCAGTTCGATCGATCTTAGACTG
Found at i:35054445 original size:26 final size:26
Alignment explanation
Indices: 35054409--35054461 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
35054399 CTGGTCTGAT
35054409 CTTAGACTGGGAATGAAATCCGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
* *
35054435 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
35054461 C
1 C
35054462 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCGTATG
Found at i:35055083 original size:26 final size:26
Alignment explanation
Indices: 35055045--35055097 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35055035 CCGATCCGAT
35055045 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
35055071 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
35055097 C
1 C
35055098 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:35055465 original size:158 final size:158
Alignment explanation
Indices: 35055070--35055490 Score: 443
Period size: 158 Copynumber: 2.7 Consensus size: 158
35055060 AACTCCATAT
*
35055070 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGTGTGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGTGCGGGCGCTCAG
* * ** * *
35055135 TCGGCCGGAGAGGCAGAATGCATAAGCCGGGGATCGGCCCGATCCCCCCTACGTACTGTCGATCC
66 ACGGCCGGAGAGGCAAAATGCGCAAGCTGGGGATCGGCCCGATCCCCCCTACGGACTGTCGATCC
* * * * ***
35055200 TGCTGCCGCAGCACTCGGTTCGGTCTGA
131 CGCTGCCACAACACTCAGTTCCAACTGA
* * * * ** *
35055228 TCTTAGAC-TGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCATGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGTGCGGGCGCTCA
* * * * * * *
35055292 GCCGGCCGAAGAGGCATAATGCGCAAGCTGGGGATTGGCTCGGTCCCCCTCTGCGGA-TGTCGAT
65 GACGGCCGGAGAGGCAAAATGCGCAAGCTGGGGATCGGCCCGATCCCCC-CTACGGACTGTCGAT
* *
35055356 CCCGCTGCCACAACCCTCAG-TCCAACTGGG
129 CCCGCTGCCACAACACTCAGTTCCAACT-GA
* * * *
35055386 GCTTAGACATGGAATGAAATCCCTATGCCTAAGCCAACCAACGAAACGGGCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGTGCGGGCGCTCAG
*** * *
35055451 ACGATTGGATAGGCAAAATGCGCAAGCTGGGAATCGGCCC
66 ACGGCCGGAGAGGCAAAATGCGCAAGCTGGGGATCGGCCC
35055491 TTGGTCTGAT
Statistics
Matches: 210, Mismatches: 49, Indels: 8
0.79 0.18 0.03
Matches are distributed among these distances:
157 5 0.02
158 199 0.95
159 6 0.03
ACGTcount: A:0.24, C:0.29, G:0.29, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGTGCGGGCGCTCAG
ACGGCCGGAGAGGCAAAATGCGCAAGCTGGGGATCGGCCCGATCCCCCCTACGGACTGTCGATCC
CGCTGCCACAACACTCAGTTCCAACTGA
Found at i:35056882 original size:315 final size:316
Alignment explanation
Indices: 35056151--35056967 Score: 953
Period size: 316 Copynumber: 2.6 Consensus size: 316
35056141 AACTCCGTAT
* * ** *
35056151 GCTTAGACATGGAATGAACTCCGC-ATGCTTAAGCCAACCCATGAAACAAGCGTGCGGACGCTCA
1 GCTTAGACATGGAATGAACTCC-CTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCA
* ** ** * *
35056215 GCCGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCAACCCGGTCCCCCCTGCGTGCTATCAATC
65 ACCGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCCCTGCGTGCTGTCAATC
* *** **
35056280 CTGCTTCCGCAACCCTTGGTCCGGTCCGATCTTAGACTGGAAATGAACTCTGTATGCATAAGTCA
130 CTGCTGCCGCAACCCTCCATCCAATCCGATCTTAGACTGGAAATGAACTCTGTATGCATAAGTCA
* * * * * * ***
35056345 ACCCACGAAATGAGTGTGCGGGCACTGAGCTGACCGAAGAGGTATAATGGGCAAGTTGGGATCGA
195 ACCCACGAAACGAGCGTACGGGCACTGAGCCGACCGAAGAGGCATAATGCGCAAGCCAGGATCGA
* *
35056410 CCCACTCCCCCTCTGCGTGATATCGGTCCCGCTACCACAACCCTTGGTCCGGTAGGG
260 CCCACTCCCCCTCTGCGTGATATCGGTCCCGCTACCACAACCCTCGGTCCGCTAGGG
* * * * *
35056467 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCATACAGGCACTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAA
* ** ** *
35056532 CCGACCGTAGAGGCAGAATGTACAAGCTGGGGATCGGCCCGATCCCCCCTGCGTGCTGCCAATCC
66 CCGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCCCTGCGTGCTGTCAATCC
** *
35056597 TAATGCCGCAACCCTCCATCCAATCCGATCTTAGACT-GAGAATGAATTCTGTATGCATAAGTCA
131 TGCTGCCGCAACCCTCCATCCAATCCGATCTTAGACTGGA-AATGAACTCTGTATGCATAAGTCA
* ** *
35056661 ACCCATGAAACGAGCGTACGGGCACTGAGCCGGTCGAAGAGGCATAATGCGCAAGCCAGGATCGG
195 ACCCACGAAACGAGCGTACGGGCACTGAGCCGACCGAAGAGGCATAATGCGCAAGCCAGGATCGA
* * * * * * * *
35056726 CTCAGT-CCCCTCTGCGTGCTGTTGGTGCCGCTGCCACAACCCTCGGTTCGACT-GGG
260 CCCACTCCCCCTCTGCGTGATATCGGTCCCGCTACCACAACCCTCGGTCCG-CTAGGG
*
35056782 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCTACGAAACGGGCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAA
* * * *
35056847 CCGACCGGAGAGGTAGAATGCGTAAGCCAGGGATCGGCTCGATCCCCCCTACGTGCTGTCAATCC
66 CCGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCCCTGCGTGCTGTCAATCC
* ** * * *
35056912 TGCTGCCACAACCCTCGGC-T-CGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
131 TGCTGCCGCAACCCTC--CATCCAATCCGATCTTAGACTGGAAATGAACTCTGTATGC
35056968 TTAGACTGGG
Statistics
Matches: 415, Mismatches: 80, Indels: 13
0.82 0.16 0.03
Matches are distributed among these distances:
315 198 0.48
316 216 0.52
317 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.19
Consensus pattern (316 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAA
CCGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCCCTGCGTGCTGTCAATCC
TGCTGCCGCAACCCTCCATCCAATCCGATCTTAGACTGGAAATGAACTCTGTATGCATAAGTCAA
CCCACGAAACGAGCGTACGGGCACTGAGCCGACCGAAGAGGCATAATGCGCAAGCCAGGATCGAC
CCACTCCCCCTCTGCGTGATATCGGTCCCGCTACCACAACCCTCGGTCCGCTAGGG
Found at i:35056947 original size:158 final size:157
Alignment explanation
Indices: 35056152--35056967 Score: 640
Period size: 158 Copynumber: 5.2 Consensus size: 157
35056142 ACTCCGTATG
* * * * *
35056152 CTTAGACATGGAATGAACTCCGC-ATGCTTAAGCCAACCCATGAAACAAGCGTGCGGACGCTCAG
1 CTTAGAC-TGGAATGAACTCC-CTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
** * ** * *
35056216 CCGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCAACCCGGTCCCCCCTGCGTGCTATCAATCC
64 CCGACCGAAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCCCTGCGTGCTGTCAATCC
* * *
35056281 TGCTTCCGCAACCCTTGGTCCGGTCCGAT
129 TGCTGCCACAACCCTCGGTCCGGTCCGAT
** * * * *
35056310 CTTAGACTGGAAATGAACTCTGTATGCATAAGTCAACCCACGAAATGAGTGTGCGGGCACTGAGC
1 CTTAGACTGG-AATGAACTCCCTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGC
* * * * ** * * * **
35056375 TGACCGAAGAGGTATAATGGGCAAG-TTGGGATCGACCC-ACTCCCCCTCTGCGTGATATCGGTC
65 CGACCGAAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGA-TCCCCC-CTGCGTGCTGTCAATC
* * * ** **
35056438 CCGCTACCACAACCCTTGGTCCGGTAGGGG
128 CTGCTGCCACAACCCTCGGTCCGGTCCGAT
* * * * * * *
35056468 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCATACAGGCACTCAAC
1 CTTAGAC-TGGAATGAACTCCCTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGC
* ** ** *
35056533 CGACCGTAGAGGCAGAATGTACAAGCTGGGGATCGGCCCGATCCCCCCTGCGTGCTGCCAATCCT
65 CGACCGAAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCCCTGCGTGCTGTCAATCCT
** * ** **
35056598 AATGCCGCAACCCTCCATCCAATCCGAT
130 GCTGCCACAACCCTCGGTCCGGTCCGAT
* ** * * * *
35056626 CTTAGACTGAGAATGAATTCTGTATGCATAAGTCAACCCATGAAACGAGCGTACGGGCACTGAGC
1 CTTAGACTG-GAATGAACTCCCTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGC
** * * * ***
35056691 CGGTCGAAGAGGCATAATGCGCAAGCCA-GGATCGGCTC-AGTCCCCTCTGCGTGCTGTTGGTGC
65 CGACCGAAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGA-TCCCCCCTGCGTGCTGTCAAT-C
* * * **
35056754 C-GCTGCCACAACCCTCGGTTC-GACTGGGG
128 CTGCTGCCACAACCCTCGGTCCGGTC-CGAT
* * * * *
35056783 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCTACGAAACGGGCGTGCGGGCGCTCAAC
1 CTTAGAC-TGGAATGAACTCCCTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGC
* * * * *
35056848 CGACCGGAGAGGTAGAATGCGTAAGCCAGGGATCGGCTCGATCCCCCCTACGTGCTGTCAATCCT
65 CGACCGAAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCCCTGCGTGCTGTCAATCCT
*
35056913 GCTGCCACAACCCTCGG-CTCGGTCTGAT
130 GCTGCCACAACCCTCGGTC-CGGTCCGAT
*
35056941 CTTAGACTGGGAATGAACTCCGTATGC
1 CTTAGACT-GGAATGAACTCCCTATGC
35056968 TTAGACTGGG
Statistics
Matches: 502, Mismatches: 138, Indels: 36
0.74 0.20 0.05
Matches are distributed among these distances:
156 2 0.00
157 136 0.27
158 340 0.68
159 23 0.05
160 1 0.00
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (157 bp):
CTTAGACTGGAATGAACTCCCTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCC
GACCGAAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCCCTGCGTGCTGTCAATCCTG
CTGCCACAACCCTCGGTCCGGTCCGAT
Found at i:35056977 original size:26 final size:26
Alignment explanation
Indices: 35056941--35056993 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
35056931 TCGGTCTGAT
35056941 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
35056967 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35056993 C
1 C
35056994 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35058998 original size:342 final size:342
Alignment explanation
Indices: 35058368--35059131 Score: 958
Period size: 342 Copynumber: 2.2 Consensus size: 342
35058358 CTGATCCGAT
* *
35058368 CTTAGACTGGGAATGAACTCCGTATGTATAAGTCAACCCACGAAACGAGTGTGCGGGCACTGAGC
1 CTTAGACTGGG-ATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCACTGAGC
** * *
35058433 CGACCGAAGAGGCATAATGTGCAAGCCGTGGATCGACCCGGTCCCCCTCTGCATGCTACCGGTCC
65 CGACCGAAGAGGCATAATACGCAAGCCGAGGATCGACCCGGTCCCCCTCTGCATGCTACCGATCC
* * * *
35058498 CGCTACCACAACCCTCAGTCTGGGTGGGGCTTAGACTTGGAATGAACTCCCTATGCCTAAGCCAA
130 CACTACCACAACCCTCAGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
* * * *
35058563 CCCATGAAACGGACGTGCGGGCGCTCAGTCGGCCTGAGAGGCAGAATGCGTAAGCCGGGGATCAG
195 CCCACGAAACGGACGTGCGGGCGCTCAGTCGACCAGAGAGGCAGAATGCGCAAGCCGGGGATCAG
* * * * * * * **
35058628 CCCGGTCCCCCTTTCGTGCTGCCGATCCTGTTGCTACAACCCTCGGTCTGATCTGATCTTAGGTT
260 CCCGGTCCCCCCTACGTGCTGCCGATCCTGCTGCCACAACCCTCGATCCGATCCGATCTTAGACT
*
35058693 GGGAATGAACTCCGTTTG
325 GGGAATGAACTCCGTATG
* * * *
35058711 CTTAGACTGGAGATGAACTTCGTATGCAAAAGTCAACCCACGAAATGAGCGTGGGGGCACTGAGC
1 CTTAGACTGG-GATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCACTGAGC
* ** * * * * ** **
35058776 TGGTCGGAGAGGCATAATACGTAAGCTGAGGATCGGCCC-GTCCCCCTCTGTGTGCTGTCGATCC
65 CGACCGAAGAGGCATAATACGCAAGCCGAGGATCGACCCGGTCCCCCTCTGCATGCTACCGATCC
* *
35058840 CACTGCCACAACCCTC-GATCCGGCTGGGGCTTAGACATGGAATGAAGTCCCTATGCCTAAGCCA
130 CACTACCACAACCCTCAG-TCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
* * * * * * *
35058904 ACCTACGAAATGGGCGTGCGGGCTCTCAGTCGACCAGAGAGGCAGAGTGCGCAAGCCGTGGATCG
194 ACCCACGAAACGGACGTGCGGGCGCTCAGTCGACCAGAGAGGCAGAATGCGCAAGCCGGGGATCA
* * * *
35058969 GCTCGGTCCCCCCTACGTGCTGTCGATCCTGCTGCCGCCACCCTCGATCCGATCCGATCTTAGAC
259 GCCCGGTCCCCCCTACGTGCTGCCGATCCTGCTGCCACAACCCTCGATCCGATCCGATCTTAGAC
35059034 TGGGAATGAACTCCGTATG
324 TGGGAATGAACTCCGTATG
* * * *
35059053 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCACTCAGT
1 CTTAGACT-GGGATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCACTGAGC
35059118 CGACC-AGAGAGGCA
65 CGACCGA-AGAGGCA
35059132 GGATGCACAA
Statistics
Matches: 354, Mismatches: 63, Indels: 9
0.83 0.15 0.02
Matches are distributed among these distances:
341 1 0.00
342 264 0.75
343 88 0.25
344 1 0.00
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.20
Consensus pattern (342 bp):
CTTAGACTGGGATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCACTGAGCC
GACCGAAGAGGCATAATACGCAAGCCGAGGATCGACCCGGTCCCCCTCTGCATGCTACCGATCCC
ACTACCACAACCCTCAGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
CCACGAAACGGACGTGCGGGCGCTCAGTCGACCAGAGAGGCAGAATGCGCAAGCCGGGGATCAGC
CCGGTCCCCCCTACGTGCTGCCGATCCTGCTGCCACAACCCTCGATCCGATCCGATCTTAGACTG
GGAATGAACTCCGTATG
Found at i:35059056 original size:26 final size:26
Alignment explanation
Indices: 35059027--35059079 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
35059017 CCGATCCGAT
35059027 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
35059053 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35059079 C
1 C
35059080 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35059777 original size:25 final size:26
Alignment explanation
Indices: 35059743--35059794 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
35059733 CTGGTTCGAT
35059743 CTTAGACTGGAG-TGAACTCCGTATG
1 CTTAGACTGGAGATGAACTCCGTATG
* *
35059768 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGAGATGAACTCCGTATG
35059794 C
1 C
35059795 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 11 0.46
26 13 0.54
ACGTcount: A:0.23, C:0.19, G:0.29, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGAGATGAACTCCGTATG
Found at i:35060056 original size:342 final size:341
Alignment explanation
Indices: 35059427--35060137 Score: 892
Period size: 342 Copynumber: 2.1 Consensus size: 341
35059417 CCGATCTAAT
* *
35059427 CTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGCATGCGGACGCTAAGC
1 CTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCATGCGGACACTAAGC
* * * *
35059492 CAACCGAAGAGGCATAACGCACAAGCGGGATCAAGCCTAGTCCCCCCTTTACGTGCTGTCGGTCC
66 CAACCGAAGAGGAATAACGCACAAGCGGGATCAACCCGAGTCCCCCCTGTA-GTGCTGTCGGTCC
* * * * *
35059557 CGCTGCGACAACCTTCGGTCCGATTGGGGCTTAGAATGGAATGAACTCCCTATGCCTAAGCCAAC
130 CACTGCCACAACCTTCGGTCCGACTAGGGCTTAGAATGAAATGAACTCCCTATGCCTAAGCCAAC
* * * *
35059622 CCATGAAACGGGCGTGCGGGTGCTCAACCGGTCAGAGAGGCAGAATGCGCAAGCCGAGGATCAGC
195 CCACGAAACGGGCGTACGGGCGCTCAACCGGTCAGAGAGGCAGAATGCGCAAGCCGAAGATCAGC
** * * * * *
35059687 CCGATCCCCCCTGCGTGCTGTCGATCCTGCTATC-CTAACCCTCGGTCTGGTTCGATCTTAGACT
260 CCGATCCCCCCTGCGTGCTACCGATCCTACTATCGC-AACCCTCGATCCGGTCCAATCTTAGACT
* *
35059751 -GGAGTGAACTCCGTATG
324 GGGAATAAACTCCGTATG
* * * * * * *
35059768 CTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCATGCGGACACTAAGC
*** * * * *
35059833 CGGTCGAAGAGGAATAATGCGCAAGCCAGGGATCGACCCGA-TCCTCCTCTGT-GTGCTGTCGGT
66 CAACCGAAGAGGAATAACGCACAAG-C-GGGATCAACCCGAGTCC-CCCCTGTAGTGCTGTCGGT
* *
35059896 CCCACTGCCACAATCC-TCGGTTCGACTAGGGCTTAGACATGAAATGAACTCCTTATGCCTAAGC
128 CCCACTGCCACAA-CCTTCGGTCCGACTAGGGCTTAGA-ATGAAATGAACTCCCTATGCCTAAGC
* * *
35059960 CAACCCACGAAACGGGCGTACGGGCGCTCAGCTGGTCGGAGAGGCAGAATGCGCAAGCCGAAGAT
191 CAACCCACGAAACGGGCGTACGGGCGCTCAACCGGTCAGAGAGGCAGAATGCGCAAGCCGAAGAT
* * *
35060025 CGGCCCGGTCCCCCCTGCGTGCTACCGATCCTACTTTCGCAACCCTCGATCCGGTCCAATCTTAG
256 CAGCCCGATCCCCCCTGCGTGCTACCGATCCTACTATCGCAACCCTCGATCCGGTCCAATCTTAG
35060090 ACTGGGAATAAACTCCGTATG
321 ACTGGGAATAAACTCCGTATG
* *
35060111 CTTAGACTGGGAATAAACTCTGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
35060138 TTAGACTGGG
Statistics
Matches: 313, Mismatches: 50, Indels: 12
0.83 0.13 0.03
Matches are distributed among these distances:
341 115 0.37
342 144 0.46
343 54 0.17
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (341 bp):
CTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCATGCGGACACTAAGC
CAACCGAAGAGGAATAACGCACAAGCGGGATCAACCCGAGTCCCCCCTGTAGTGCTGTCGGTCCC
ACTGCCACAACCTTCGGTCCGACTAGGGCTTAGAATGAAATGAACTCCCTATGCCTAAGCCAACC
CACGAAACGGGCGTACGGGCGCTCAACCGGTCAGAGAGGCAGAATGCGCAAGCCGAAGATCAGCC
CGATCCCCCCTGCGTGCTACCGATCCTACTATCGCAACCCTCGATCCGGTCCAATCTTAGACTGG
GAATAAACTCCGTATG
Found at i:35060162 original size:25 final size:26
Alignment explanation
Indices: 35060085--35060162 Score: 122
Period size: 26 Copynumber: 3.0 Consensus size: 26
35060075 CCGGTCCAAT
*
35060085 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCTGTATG
35060111 CTTAGACTGGGAATAAACTCTGTATG
1 CTTAGACTGGGAATAAACTCTGTATG
* *
35060137 CTTAGACTGGGGAT-AACTCTGAATG
1 CTTAGACTGGGAATAAACTCTGTATG
35060162 C
1 C
35060163 CTAAGTCAAC
Statistics
Matches: 49, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
25 11 0.22
26 38 0.78
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCTGTATG
Found at i:35060592 original size:171 final size:171
Alignment explanation
Indices: 35060282--35060593 Score: 416
Period size: 171 Copynumber: 1.8 Consensus size: 171
35060272 CCAATCCCGC
* * * * *
35060282 TGTCGATCCTACTGCCACAACCCTCGGTTCGACTGGGGCCTAGACATGGAATGAACTTCGTATGC
1 TGTCGATCCTACTACCACAACCCTCGGTCCGACTGGAGCCTAGACATGGAATGAACTCCATATGC
* * * * *
35060347 CTAAGCCAACCCATGAAACGAGCGTGCTGGCACTCAGCCAGCCGGAGAGGCATAATGCGCAAGCT
66 CTAAGCCAACCCACGAAACGAGCGTGCTGGCACTCAGACAGCCGAAAAGGCATAATGCGCAAGCA
*
35060412 GGAGATCAGCCTGATCCCCCTCTACCTGCTGTCGATCCTAA
131 AGAGATCAGCCTGATCCCCCTCTACCTGCTGTCGATCCTAA
* *
35060453 TGTCGATCCTGCTACCACAACCCTCGGTCCGACTGGAGCTTAGACATGGAATGAACTCCATATGC
1 TGTCGATCCTACTACCACAACCCTCGGTCCGACTGGAGCCTAGACATGGAATGAACTCCATATGC
** *
35060518 CTAAGCCAACCCACGAAACGAGCGTGC-GAGTGCTCA-ACAGGCCGAAAAGGC-TGAATGCGTAA
66 CTAAGCCAACCCACGAAACGAGCGTGCTG-GCACTCAGACA-GCCGAAAAGGCAT-AATGCGCAA
35060580 GCCAAG-GATCAGCC
128 G-CAAGAGATCAGCC
35060594 CAGTCCCCCC
Statistics
Matches: 121, Mismatches: 16, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
170 4 0.03
171 115 0.95
172 2 0.02
ACGTcount: A:0.26, C:0.31, G:0.25, T:0.18
Consensus pattern (171 bp):
TGTCGATCCTACTACCACAACCCTCGGTCCGACTGGAGCCTAGACATGGAATGAACTCCATATGC
CTAAGCCAACCCACGAAACGAGCGTGCTGGCACTCAGACAGCCGAAAAGGCATAATGCGCAAGCA
AGAGATCAGCCTGATCCCCCTCTACCTGCTGTCGATCCTAA
Found at i:35061675 original size:158 final size:158
Alignment explanation
Indices: 35061213--35061989 Score: 617
Period size: 158 Copynumber: 4.9 Consensus size: 158
35061203 TAACCAGCAC
* * * *** * *
35061213 CCAACCCACGAAATGAGCGTGCGGTCTCTCAGTCGATTGGAGAGGCAGAATGCGCAAGCCGAGGA
1 CCAACCCACGAAATGAGCGTGCGGGCACTCAGCCGGCCGGAAAGGCAGAATGCGCAAGCCGGGGA
* * * **
35061278 TC-GACCTGGTCGCCCCTGCGTGCTGTCGATCCTGCTGCCGCAACCCT-TGT-TTGATCCGGTCT
66 TCGGCCCTGGTCCCCCCTGCGTGCTGTTGATCCTGCTGCCGCAACCCTCTGTCCAG-TCCGGTCT
*
35061340 TAGAGTGGGAATGAACTCTGTATGCATAAG
130 TAGACT-GGAATGAACTCTGTATGCATAAG
* * * * * * *
35061370 TCAACCCACGAAATGAGCGTGCAGGCACTGAGCTGACC-GAAGAGGCATAATGCGCAAGCCAGGG
1 CCAACCCACGAAATGAGCGTGCGGGCACTCAGCCGGCCGGAA-AGGCAGAATGCGCAAGCCGGGG
* * * * * * * * *
35061434 ATCGG-TC-GGTCCCCTCTGCGTGCTGTCGGTCCCGCTACCACAACCCTCGGTCCAG-CTGGTGC
65 ATCGGCCCTGGTCCCCCCTGCGTGCTGTTGATCCTGCTGCCGCAACCCTCTGTCCAGTCCGGT-C
*
35061496 TTAGACATGGAATGAACTCTGTATGCCTAAG
129 TTAGAC-TGGAATGAACTCTGTATGCATAAG
* * * ** * * *
35061527 CCAAGCCACGGAATGAGAGTGCGGGCGTTCAACCGGCCGGAAAGGCAAAATGCACAAGCCGGGGA
1 CCAACCCACGAAATGAGCGTGCGGGCACTCAGCCGGCCGGAAAGGCAGAATGCGCAAGCCGGGGA
** * * * ** *
35061592 TC-ATCTTGGTCCCCCCTGCGTGCTATTGATCCTACTATCGCAACCCTCTGTCCAGTCCGATCTT
66 TCGGCCCTGGTCCCCCCTGCGTGCTGTTGATCCTGCTGCCGCAACCCTCTGTCCAGTCCGGTCTT
35061656 AGACTGGGAATGAACTCTGTATGCATAAG
131 AGACT-GGAATGAACTCTGTATGCATAAG
* * * ** * * * * * *
35061685 TCAACGCACAAAACT-AGCGTGCGGGTGCTGAGCCAGTCGAAAAGGCATAATGCGCAAGTCGGGG
1 CCAACCCACGAAA-TGAGCGTGCGGGCACTCAGCCGGCCGGAAAGGCAGAATGCGCAAGCCGGGG
* * * * * * ** *
35061749 ATCGGCCCAGG-CCCCCTCTGCGTGCTGTTGGTCCCGCTGCCACAACCCTCAGTCCGGTTGGGGC
65 ATCGGCCCTGGTCCCCC-CTGCGTGCTGTTGATCCTGCTGCCGCAACCCTCTGTCCAGTCCGGTC
*
35061813 TTAGACATGGAATGAACTTCT-TATGCCTAAG
129 TTAGAC-TGGAATGAAC-TCTGTATGCATAAG
** * * *
35061844 CCAACCCACGAAACAAGCGTGCGGGCACTCAGCCGGCCGGAGAGGCAGAATGCGCAAGCTGAGGA
1 CCAACCCACGAAATGAGCGTGCGGGCACTCAGCCGGCCGGAAAGGCAGAATGCGCAAGCCGGGGA
** * * * * * *
35061909 TC-GCCCCAGTCCCCCCTGTGTGCTGTTGATCCTACTGTCGCAACCCTC-GACCCGGTCCGATCT
66 TCGGCCCTGGTCCCCCCTGCGTGCTGTTGATCCTGCTGCCGCAACCCTCTG-TCCAGTCCGGTCT
*
35061972 TAAACTAGGAATGAACTC
130 TAGACT-GGAATGAACTC
35061990 CACATGTTGA
Statistics
Matches: 482, Mismatches: 118, Indels: 40
0.75 0.18 0.06
Matches are distributed among these distances:
156 40 0.08
157 136 0.28
158 181 0.38
159 121 0.25
160 4 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.20
Consensus pattern (158 bp):
CCAACCCACGAAATGAGCGTGCGGGCACTCAGCCGGCCGGAAAGGCAGAATGCGCAAGCCGGGGA
TCGGCCCTGGTCCCCCCTGCGTGCTGTTGATCCTGCTGCCGCAACCCTCTGTCCAGTCCGGTCTT
AGACTGGAATGAACTCTGTATGCATAAG
Found at i:35061845 original size:317 final size:314
Alignment explanation
Indices: 35061255--35061989 Score: 888
Period size: 317 Copynumber: 2.3 Consensus size: 314
35061245 TCGATTGGAG
* * * *
35061255 AGGCAGAATGCGCAAGCCGAGGATCGACCTGGTCGCCCCTGCGTGCTGTCGATCCTGCTGCCGCA
1 AGGCAGAATGCGCAAGCCGAGGATC-ACCTGGTCCCCCCTGCGTGCTGTTGATCCTACTGTCGCA
** * * *
35061320 ACCCT-TGT-TTGATCCGGTCTTAGAGTGGGAATGAACTCTGTATGCATAAGTCAACCCACGAAA
65 ACCCTCTGTCCAG-TCCGATCTTAGACTGGGAATGAACTCTGTATGCATAAGTCAACCCACAAAA
* * * *
35061383 TGAGCGTGCAGGCACTGAGCTGACCGAAGAGGCATAATGCGCAAGCCAGGGATCGGTCGGTCCCC
129 TGAGCGTGCAGGCACTGAGCAGACCGAAAAGGCATAATGCGCAAGCCAGGGATCGGCCGGCCCCC
* *
35061448 TCTGCGTGCTGTCGGTCCCGCTACCACAACCCTCGGTCCAGCTGGTGCTTAGACATGGAATGAAC
194 TCTGCGTGCTGTCGGTCCCGCTACCACAACCCTCAGTCCAGCTGGGGCTTAGACATGGAATGAAC
* * ** **
35061513 TCTGTATGCCTAAGCCAAGCCACGGAATGAGAGTGCGGGCGTTCAACCGGCCGGAA
259 TCTGTATGCCTAAGCCAACCCACGAAACAAGAGTGCGGGCACTCAACCGGCCGGAA
* * * * * *
35061569 AGGCAAAATGCACAAGCCGGGGATCATCTTGGTCCCCCCTGCGTGCTATTGATCCTACTATCGCA
1 AGGCAGAATGCGCAAGCCGAGGATCA-CCTGGTCCCCCCTGCGTGCTGTTGATCCTACTGTCGCA
*
35061634 ACCCTCTGTCCAGTCCGATCTTAGACTGGGAATGAACTCTGTATGCATAAGTCAACGCACAAAAC
65 ACCCTCTGTCCAGTCCGATCTTAGACTGGGAATGAACTCTGTATGCATAAGTCAACCCACAAAA-
* ** * * *
35061699 T-AGCGTGCGGGTGCTGAGCCAG-TCGAAAAGGCATAATGCGCAAGTCGGGGATCGGCCCAGGCC
129 TGAGCGTGCAGGCACTGAG-CAGACCGAAAAGGCATAATGCGCAAGCCAGGGATCGG-CC-GGCC
* * * *
35061762 CCCTCTGCGTGCTGTTGGTCCCGCTGCCACAACCCTCAGTCCGGTTGGGGCTTAGACATGGAATG
191 CCCTCTGCGTGCTGTCGGTCCCGCTACCACAACCCTCAGTCCAGCTGGGGCTTAGACATGGAATG
* * *
35061827 AACTTCT-TATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCACTCAGCCGGCCGGAG
256 AAC-TCTGTATGCCTAAGCCAACCCACGAAACAAGAGTGCGGGCACTCAACCGGCCGGAA
* * ** *
35061886 AGGCAGAATGCGCAAGCTGAGGATCGCCCCAGTCCCCCCTGTGTGCTGTTGATCCTACTGTCGCA
1 AGGCAGAATGCGCAAGCCGAGGATC-ACCTGGTCCCCCCTGCGTGCTGTTGATCCTACTGTCGCA
* * * *
35061951 ACCCTC-GACCCGGTCCGATCTTAAACTAGGAATGAACTC
65 ACCCTCTG-TCCAGTCCGATCTTAGACTGGGAATGAACTC
35061990 CACATGTTGA
Statistics
Matches: 355, Mismatches: 56, Indels: 17
0.83 0.13 0.04
Matches are distributed among these distances:
313 1 0.00
314 58 0.16
315 93 0.26
316 6 0.02
317 194 0.55
318 3 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.20
Consensus pattern (314 bp):
AGGCAGAATGCGCAAGCCGAGGATCACCTGGTCCCCCCTGCGTGCTGTTGATCCTACTGTCGCAA
CCCTCTGTCCAGTCCGATCTTAGACTGGGAATGAACTCTGTATGCATAAGTCAACCCACAAAATG
AGCGTGCAGGCACTGAGCAGACCGAAAAGGCATAATGCGCAAGCCAGGGATCGGCCGGCCCCCTC
TGCGTGCTGTCGGTCCCGCTACCACAACCCTCAGTCCAGCTGGGGCTTAGACATGGAATGAACTC
TGTATGCCTAAGCCAACCCACGAAACAAGAGTGCGGGCACTCAACCGGCCGGAA
Found at i:35062952 original size:26 final size:26
Alignment explanation
Indices: 35062911--35062963 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
35062901 CCGGTTCGAT
*
35062911 CTTAGACTGGGAATGAACCCCATATG
1 CTTAGACAGGGAATGAACCCCATATG
* * *
35062937 CTTAGACAGGGGATGAACTCCGTATG
1 CTTAGACAGGGAATGAACCCCATATG
35062963 C
1 C
35062964 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.23
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACCCCATATG
Found at i:35064499 original size:26 final size:26
Alignment explanation
Indices: 35064458--35064510 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
35064448 CCGGTTCGAT
*
35064458 CTTAGACTGGGAATGAACCCCATATG
1 CTTAGACAGGGAATGAACCCCATATG
* * *
35064484 CTTAGACAGGGGATGAACTCCGTATG
1 CTTAGACAGGGAATGAACCCCATATG
35064510 C
1 C
35064511 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.23
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACCCCATATG
Found at i:35065547 original size:26 final size:26
Alignment explanation
Indices: 35065505--35065557 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
35065495 GGCTCAAAAT
*
35065505 CTTAGACTGGGATTGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
35065531 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
35065557 C
1 C
35065558 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:35066048 original size:26 final size:26
Alignment explanation
Indices: 35066007--35066059 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
35065997 CCGGTTCGAT
*
35066007 CTTAGACTGGGAATGAACCCCATATG
1 CTTAGACAGGGAATGAACCCCATATG
* * *
35066033 CTTAGACAGGGGATGAACTCCGTATG
1 CTTAGACAGGGAATGAACCCCATATG
35066059 C
1 C
35066060 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.23
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACCCCATATG
Found at i:35066395 original size:26 final size:26
Alignment explanation
Indices: 35066366--35066418 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
35066356 CCAATCCGAT
35066366 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
35066392 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
35066418 C
1 C
35066419 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:35067573 original size:158 final size:155
Alignment explanation
Indices: 35067112--35067575 Score: 395
Period size: 159 Copynumber: 2.9 Consensus size: 155
35067102 AACTCCATAT
* * *
35067112 GCTTAGACATGGAATGAACT-TCGTATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCTC-TATGCATAAGCCAACCCAAGAAACGGACGT-CGGGCGCTCA
* * * **
35067176 GTCGATCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGATTCCCCCCTGCAAGCTGTCGAT
64 GCCGATCGGAGAGGCAGAATGCGCAAGC-GGGGATCGGCTCGA-TCCCCCCTGCGTGCTGTCGAT
*
35067241 CCTGCTACCGTAACCCTCGGTCCGGTCTGA
127 CCTGCTGCCGT-ACCCTCGGTCCGGTCTGA
* * * * * * *
35067271 TCTTAGACAAGGAATGAACTCTGTATGCATAAGTCAACCCACA-AAA-TGA-GTGAGCGAGCACT
1 GCTTAGACATGGAATGAACTCTCTATGCATAAGCCAACCCA-AGAAACGGACGT---CGGGCGCT
* * * * ** * *
35067333 GAGCCGACCGAAGAGGCATAATG-GCAAGCCATGGATCGG-TCCGATCCCCCTCTGCGTGTTGCC
62 CAGCCGATCGGAGAGGCAGAATGCGCAAG-CGGGGATCGGCT-CGATCCCCC-CTGCGTGCTGTC
* ** * *
35067396 GTTCCTGCTGCCACAACCCTTGGTCCGGT-TGGG
124 GATCCTGCTGCC-GTACCCTCGGTCCGGTCT-GA
* * *
35067429 GCTTAGCCATGGAATGAACTCTCTATGCTTAAGCCAACCCAAGAAACGGACGTCTGTGGCGTTCA
1 GCTTAGACATGGAATGAACTCTCTATGCATAAGCCAACCCAAGAAACGGACGTC-G-GGCGCTCA
* * *
35067494 GCCTG-TCGGAGAGGCAGAATGCGTAAGTCGGGGATCGGCTCGGTCCCTCCTGCGTGCTGTCGAT
64 GCC-GATCGGAGAGGCAGAATGCGCAAG-CGGGGATCGGCTCGATCCCCCCTGCGTGCTGTCGAT
35067558 CCTGCTGCCGTACCCTCG
127 CCTGCTGCCGTACCCTCG
35067576 CTTCGATCCG
Statistics
Matches: 233, Mismatches: 55, Indels: 35
0.72 0.17 0.11
Matches are distributed among these distances:
157 11 0.05
158 92 0.39
159 106 0.45
160 23 0.10
161 1 0.00
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.20
Consensus pattern (155 bp):
GCTTAGACATGGAATGAACTCTCTATGCATAAGCCAACCCAAGAAACGGACGTCGGGCGCTCAGC
CGATCGGAGAGGCAGAATGCGCAAGCGGGGATCGGCTCGATCCCCCCTGCGTGCTGTCGATCCTG
CTGCCGTACCCTCGGTCCGGTCTGA
Found at i:35069554 original size:26 final size:27
Alignment explanation
Indices: 35069503--35069560 Score: 73
Period size: 26 Copynumber: 2.2 Consensus size: 27
35069493 CCGATCCGAT
*
35069503 CTTAGACTAGGAATGAACTCCGTATG-
1 CTTAGACTAGGAATGAACTCCATATGC
* * *
35069529 CTTAGACTGGGGATGAACTTCATATGC
1 CTTAGACTAGGAATGAACTCCATATGC
35069556 CTTAG
1 CTTAG
35069561 CCAACCAGAG
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
26 22 0.81
27 5 0.19
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.29
Consensus pattern (27 bp):
CTTAGACTAGGAATGAACTCCATATGC
Found at i:35070643 original size:26 final size:26
Alignment explanation
Indices: 35070614--35070734 Score: 138
Period size: 26 Copynumber: 4.6 Consensus size: 26
35070604 TCCTAGACTG
35070614 GGAATGAACTCCGTATGCTTAGACAT
1 GGAATGAACTCCGTATGCTTAGACAT
* *
35070640 GGAATGAACTCCGTATGCCTA-AGCGAA
1 GGAATGAACTCCGTATGCTTAGA-C-AT
***
35070667 CCCATGAACTCCGTATGCTTAGAC-T
1 GGAATGAACTCCGTATGCTTAGACAT
*
35070692 GGGAATGAACTCTGTATGCTTAGACAT
1 -GGAATGAACTCCGTATGCTTAGACAT
*
35070719 GGAATGAACTCTGTAT
1 GGAATGAACTCCGTAT
35070735 ACCTAAGCCA
Statistics
Matches: 79, Mismatches: 11, Indels: 10
0.79 0.11 0.10
Matches are distributed among these distances:
25 1 0.01
26 57 0.72
27 20 0.25
28 1 0.01
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
GGAATGAACTCCGTATGCTTAGACAT
Found at i:35073550 original size:159 final size:158
Alignment explanation
Indices: 35073144--35073550 Score: 435
Period size: 159 Copynumber: 2.6 Consensus size: 158
35073134 ACTCCATATG
* * * *
35073144 CTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCATAAAACGAGCGTACGGGCGCTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTACGGGCGCTCAGC
* * *
35073209 CGACCGGAGAGGCAGAATGCACAAGCCTGGGATCAACCCGGTCCCCCCTACGTGCTGTCGATCCT
66 CGACCGAAGAGGCAGAATGCGCAAGCCTGGGATCAACCCGGTCCCCCCTACGTGCTGCCGATCCT
* * * *
35073274 GCTGCCGCAACCCTTGATCCGGCCCGAT
131 ACTGCCACAACCCTCGATCCAGCCCGAT
* * * * *
35073302 CTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAATGAGCGTTCGGGCGTTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTACGGGCGCTCAG
* * * ** * *
35073366 CCGGCCGAAGAGGCATAGTGCGCAAG-CTGGGGATCGGCCCGGTCCCCCTCTATGTGCTGCCGGT
65 CCGACCGAAGAGGCAGAATGCGCAAGCCT-GGGATCAACCCGGTCCCCC-CTACGTGCTGCC-GA
** *
35073430 TCC-ACTGCCACAACCCTCGATCCAGCTGGGGT
127 TCCTACTGCCACAACCCTCGATCCAGC-CCGAT
* * * * * *
35073462 -TTAGACATGTAATGAACTCCTTATGCCTAAGCCAACCCACGAAATGGGTGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTACGGGCGCTCAGC
* *
35073526 CGATCGAAGAGGCAGAATGTGCAAG
66 CGACCGAAGAGGCAGAATGCGCAAG
35073551 TCAGGGGTCA
Statistics
Matches: 202, Mismatches: 41, Indels: 11
0.80 0.16 0.04
Matches are distributed among these distances:
157 3 0.01
158 91 0.45
159 101 0.50
160 7 0.03
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.19
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTACGGGCGCTCAGC
CGACCGAAGAGGCAGAATGCGCAAGCCTGGGATCAACCCGGTCCCCCCTACGTGCTGCCGATCCT
ACTGCCACAACCCTCGATCCAGCCCGAT
Found at i:35073571 original size:159 final size:157
Alignment explanation
Indices: 35073144--35073638 Score: 440
Period size: 158 Copynumber: 3.1 Consensus size: 157
35073134 ACTCCATATG
* * * *
35073144 CTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCATAAAACGAGCGTACGGGCGCTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTACGGGCGCTCAGC
* * * * *
35073209 CGACCGGAGAGGCAGAATGCACAAGCCTGGGATCAACCCGGTCCCCCCTACGTGCTGTCGATCCT
66 CGACCGAAGAGGCAGAATGCGCAAG-CTGGGGTCAGCCCGGTCCCCCCTACGTGCTGCCGATCCT
* * * *
35073274 GCTGCCGCAACCCTTGATCCGGCCCGAT
130 ACTGCCACAACCCTCGATCCAGCCCGAT
* * * * *
35073302 CTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAATGAGCGTTCGGGCGTTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTACGGGCGCTCAG
* * * * * *
35073366 CCGGCCGAAGAGGCATAGTGCGCAAGCTGGGGATCGGCCCGGTCCCCCTCTATGTGCTGCCGGTT
65 CCGACCGAAGAGGCAGAATGCGCAAGCTGGGG-TCAGCCCGGTCCCCC-CTACGTGCTGCC-GAT
** *
35073431 CC-ACTGCCACAACCCTCGATCCAGCTGGGGT
127 CCTACTGCCACAACCCTCGATCCAGC-CCGAT
* * * * * *
35073462 -TTAGACATGTAATGAACTCCTTATGCCTAAGCCAACCCACGAAATGGGTGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTACGGGCGCTCAGC
* * * * * * ** * *
35073526 CGATCGAAGAGGCAGAATGTGCAAGTCAGGGGTCAGCTCGATCCCCACTGTGTGCTGCTGATCTT
66 CGACCGAAGAGGCAGAATGCGCAAG-CTGGGGTCAGCCCGGTCCCCCCTACGTGCTGCCGATCCT
* * * * * * *
35073591 GCTGTCGCAACCCTCTATCCGGTCTGAT
130 ACTGCCACAACCCTCGATCCAGCCCGAT
35073619 CTTAGAC-TGGGAATGAACTC
1 CTTAGACAT-GGAATGAACTC
35073639 TATATGCTTA
Statistics
Matches: 266, Mismatches: 61, Indels: 20
0.77 0.18 0.06
Matches are distributed among these distances:
157 12 0.05
158 130 0.49
159 112 0.42
160 12 0.05
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTACGGGCGCTCAGC
CGACCGAAGAGGCAGAATGCGCAAGCTGGGGTCAGCCCGGTCCCCCCTACGTGCTGCCGATCCTA
CTGCCACAACCCTCGATCCAGCCCGAT
Found at i:35073655 original size:26 final size:26
Alignment explanation
Indices: 35073619--35073671 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
35073609 CCGGTCTGAT
*
35073619 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
35073645 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
35073671 C
1 C
35073672 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:35074016 original size:26 final size:26
Alignment explanation
Indices: 35073987--35074039 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
35073977 TCGATCCGAT
35073987 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
35074013 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35074039 C
1 C
35074040 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35080988 original size:159 final size:158
Alignment explanation
Indices: 35080633--35080997 Score: 378
Period size: 158 Copynumber: 2.3 Consensus size: 158
35080623 AACTCCGTAT
* ** * *
35080633 GCTTAGACATGAAATGAACTCCATATGCC-AAGGCCAACCCACGAAACGAACGTGCGGGCACTCA
1 GCTTAGACATGGAATGAACTCCATATGCCTAA-GCCAACCCATAAAACGAACGTACGGGCACTAA
* * *
35080697 GCCGATCGGAGAGGCAAAATGCACAAGTCGGGGATCGACCCAATCCCCCATACGTGCTGTTGATC
65 GCCGATCGGAGAGGCAAAATGCACAAGCCGAGGATCGACCCAATCCCCCATACGTGCTGCTGATC
* ** *
35080762 CTGCTGCTGCAACCCTCGGTCTGGTCTGA
130 CCGCTGCCACAACCCTCGGTCTGGACTGA
* * * * * *
35080791 TCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCATAAAATGAGCGTACGGGCACTAA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCATAAAACGAACGTACGGGCACTAA
* ** * * ** * *
35080855 GCCGATCGGAGAGGCATAATGTGCAAGCCGAGGATCGGCTCGGTCCCCCTCTACGTGCTGCTGGT
65 GCCGATCGGAGAGGCAAAATGCACAAGCCGAGGATCGACCCAATCCCCC-ATACGTGCTGCTGAT
*
35080920 CCCGCTGCCACAACCTTCGGTCT-GACTAGA
129 CCCGCTGCCACAACCCTCGGTCTGGACT-GA
* * *
35080950 GCTTAGACATGGAATGAACTAGC-TAGGCCTAAGCCAACCCATGAAACG
1 GCTTAGACATGGAATGAACT-CCATATGCCTAAGCCAACCCATAAAACG
35080998 GGCATACGAG
Statistics
Matches: 166, Mismatches: 35, Indels: 11
0.78 0.17 0.05
Matches are distributed among these distances:
157 1 0.01
158 91 0.55
159 72 0.43
160 2 0.01
ACGTcount: A:0.27, C:0.29, G:0.25, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATAAAACGAACGTACGGGCACTAAG
CCGATCGGAGAGGCAAAATGCACAAGCCGAGGATCGACCCAATCCCCCATACGTGCTGCTGATCC
CGCTGCCACAACCCTCGGTCTGGACTGA
Found at i:35081563 original size:505 final size:509
Alignment explanation
Indices: 35080606--35081585 Score: 1260
Period size: 505 Copynumber: 1.9 Consensus size: 509
35080596 GTGGCTCAAA
* * *
35080606 ATCTTAGATTGGGAATGAACTCCGTATGCTTAGACATGAAATGAACTCCATATGCCAAGGCCAAC
1 ATCTTAGACTGGGAATAAACTCCGTATGCTTAGACATGAAATGAACTCCATAAGCCAAGGCCAAC
* *
35080671 CCACGAAACGAACGTGCGGGCACTCAGCCGATCGGAGAGGCAAAATGCACAAGTCGGGGATCGAC
66 CCACGAAACGAACGTGCGGGCACTCA--CGATC-GAGA-GCAAAATGCACAAGCCGGGGACCGAC
* * * *
35080736 CCAATCCCCCATACGTGCTGTTGATCCTGCTGCTGCAACCCTCGGTCTGGTCTGATCTTAGACTG
127 CCAATCCCCCATACGTGCTATTGATCCTGCTGCCGCAACCCTCGGTCTAGTCTGATCTTAGACAG
* *
35080801 GGAATGAACTCCGTATGCATAAGTCAACCCATAAAATGAGCGTACGGGCACTAAGCCGATCGGAG
192 GGAATGAACTCCGTATCCATAAGTCAACCCACAAAATGAGCGTACGGGCACTAAGCCGATCGGAG
* * * *
35080866 AGGCATAATGTGCAAGCCGAGGATCGGCTCGGTCCCCCTCTACGTGCTGCTGGTCCCGCTGCCAC
257 AGGCATAATGCGCAAGCCCAGGATCGGCTCGATCCCCCTCTACATGCTGCTGGTCCCGCTGCCAC
* *
35080931 AACCTTCGGTCTGACTAGAGCTTAGACATGGAATGAACTAGCTAGGCCTAAGCCAACCCATGAAA
322 AACCTTCAGTCTGACTAGAGCTTAGACATGGAATGAACTACCTAGGCCTAAGCCAACCCATGAAA
* * * * * * *
35080996 CGGGCATACGAGTGCTCAGTCGGTCGGAGAGGTAGAATGCGTAACCCTGGGACTGGCCCGGTCCC
387 CGGGCATACGAGTGCTCAGCCAGCCAGAGAGGCAGAATGCGCAACCCGGGGACTGGCCCGGTCCC
* *
35081061 -CCTGCGTGGTATCGATCCTGCTGCTGGTACTACTACTGCAACACTCAATCCGGTCTG
452 TCCTGCGTGCTACCGATCCTGCTGCTGGTACTACTACTGCAACACTCAATCCGGTCTG
* *
35081118 ATCTTAGACTGGGAATAAACTCCGTATGCTTAGACATGCAATGAACTCCGTAAGCCTAA-GCCAA
1 ATCTTAGACTGGGAATAAACTCCGTATGCTTAGACATGAAATGAACTCCATAAGCC-AAGGCCAA
* ** * * **
35081182 CCCACGAAACGAGCGTGCGGGTGCTCA-G-TC-AGCA-CAGAATGCAGAAGCCGGGGACCGACTT
65 CCCACGAAACGAACGTGCGGGCACTCACGATCGAG-AGCAAAATGCACAAGCCGGGGACCGACCC
* * *
35081243 GATCCCCCCTGCGTGCTATTGATCCTGCTGCCGCAACCCTCGGTCTAGTCTGATCTTAGACAGGG
129 AATCCCCCATACGTGCTATTGATCCTGCTGCCGCAACCCTCGGTCTAGTCTGATCTTAGACAGGG
* * * ** *
35081308 AATGAACTTCGTATCCCA-AAGTCAACCCACGAAATGAGCGTGCGGGTGCTGAGCCGATCGGAGA
194 AATGAACTCCGTAT-CCATAAGTCAACCCACAAAATGAGCGTACGGGCACTAAGCCGATCGGAGA
* * *** * *
35081372 GGCATAATGCGCAAGCCCAGGATTGGTTCGATCCTTTTTTGCATGCTG-TCGGTCCCGCTGCCAC
258 GGCATAATGCGCAAGCCCAGGATCGGCTCGATCCCCCTCTACATGCTGCT-GGTCCCGCTGCCAC
* * * * *
35081436 AACCCTT-AGTCTGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGTCAACCCATGAA
322 AA-CCTTCAGTCTGACTAGAGCTTAGACATGGAATGAACTACCTAGGCCTAAGCCAACCCATGAA
* * * *
35081500 ACGGGCGTACGGGTGCTCAGCCAGCCAGAGAGGCAGAATGTGCAAGCCGGGGA-TCGGCCCGGTC
386 ACGGGCATACGAGTGCTCAGCCAGCCAGAGAGGCAGAATGCGCAACCCGGGGACT-GGCCCGGTC
35081564 CCTCCTGCGTGCTACCGATCCT
450 CCTCCTGCGTGCTACCGATCCT
35081586 ACTGTCGCAA
Statistics
Matches: 401, Mismatches: 60, Indels: 20
0.83 0.12 0.04
Matches are distributed among these distances:
504 2 0.00
505 288 0.72
506 25 0.06
507 1 0.00
508 2 0.00
509 1 0.00
512 80 0.20
513 2 0.00
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (509 bp):
ATCTTAGACTGGGAATAAACTCCGTATGCTTAGACATGAAATGAACTCCATAAGCCAAGGCCAAC
CCACGAAACGAACGTGCGGGCACTCACGATCGAGAGCAAAATGCACAAGCCGGGGACCGACCCAA
TCCCCCATACGTGCTATTGATCCTGCTGCCGCAACCCTCGGTCTAGTCTGATCTTAGACAGGGAA
TGAACTCCGTATCCATAAGTCAACCCACAAAATGAGCGTACGGGCACTAAGCCGATCGGAGAGGC
ATAATGCGCAAGCCCAGGATCGGCTCGATCCCCCTCTACATGCTGCTGGTCCCGCTGCCACAACC
TTCAGTCTGACTAGAGCTTAGACATGGAATGAACTACCTAGGCCTAAGCCAACCCATGAAACGGG
CATACGAGTGCTCAGCCAGCCAGAGAGGCAGAATGCGCAACCCGGGGACTGGCCCGGTCCCTCCT
GCGTGCTACCGATCCTGCTGCTGGTACTACTACTGCAACACTCAATCCGGTCTG
Found at i:35081655 original size:26 final size:26
Alignment explanation
Indices: 35081614--35081665 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
35081604 CTGATTCGAT
*
35081614 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCATATG
* *
35081640 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGAGAATGAACTCCATATG
35081666 TCTAAGTCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCATATG
Found at i:35082670 original size:26 final size:26
Alignment explanation
Indices: 35082619--35082671 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
35082609 TCGATCTGAT
*
35082619 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
35082645 CTTAGACTGGGGATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
35082671 C
1 C
35082672 CTAAGTCAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:35083038 original size:26 final size:26
Alignment explanation
Indices: 35083000--35083052 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
35082990 CCGATCCAAT
35083000 CTTAGACTAGGAATGAACTTT-GTATG
1 CTTAGACTAGGAATGAA-TTTCGTATG
35083026 CTTAGAC-ATGGAATGAATTTCGTATG
1 CTTAGACTA-GGAATGAATTTCGTATG
35083052 C
1 C
35083053 CGAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 4 0.16
26 21 0.84
ACGTcount: A:0.30, C:0.13, G:0.23, T:0.34
Consensus pattern (26 bp):
CTTAGACTAGGAATGAATTTCGTATG
Found at i:35084262 original size:26 final size:26
Alignment explanation
Indices: 35084222--35084274 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35084212 GGCTCAAAAT
35084222 CTTAGACTGGTAATGAACTCCGTATG
1 CTTAGACTGGTAATGAACTCCGTATG
*
35084248 CTTAGACATGG-AATGAACTTCGTATG
1 CTTAGAC-TGGTAATGAACTCCGTATG
35084274 C
1 C
35084275 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGTAATGAACTCCGTATG
Found at i:35084627 original size:159 final size:158
Alignment explanation
Indices: 35084247--35084627 Score: 390
Period size: 159 Copynumber: 2.4 Consensus size: 158
35084237 AACTCCGTAT
* *
35084247 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGATCAG
1 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* *** * * *
35084312 TCGGTTAGAGAGGCAGAATTCGCAAGCCGGGGATCGGCTTCGATCCCCCTGTGTGCTATCGATCC
66 CCGCCGAGAGAGGCAGAATGCGCAAGCCGGGGATCGGCTTCGATCCCCCTGCGTGCTACCGATCC
* * * * *
35084377 TGCTGCCACAACCCTCGGTCCGGTTTGA
131 CGCTACCACAACCCTCAGTCCGGCTGGA
* * * * * * * *
35084405 TCTTAGAC-TGGGAATGAACTTCGTATGCATAAGTCAACTCATGAAACAAGCGTGTGGGTGCTCA
1 GCTTAGACAT-GGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * *
35084469 GCCAGCCGA-AGAGGTATAATGCGCAAGCTGGGGATTGGC-TCGATCCCCTTCTGCGTGCTGCCG
65 GCC-GCCGAGAGAGGCAGAATGCGCAAGCCGGGGATCGGCTTCGATCCCC--CTGCGTGCTACCG
* * *
35084532 GTCCCGCTACCACAACCCTCAGTCTGGCTGGG
127 ATCCCGCTACCACAACCCTCAGTCCGGCTGGA
* * * * *
35084564 GCTTAGACATGGAATGAAATCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
35084628 ATCGGTCAGA
Statistics
Matches: 175, Mismatches: 43, Indels: 9
0.77 0.19 0.04
Matches are distributed among these distances:
157 10 0.06
158 79 0.45
159 85 0.49
160 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.28, T:0.21
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGCCGAGAGAGGCAGAATGCGCAAGCCGGGGATCGGCTTCGATCCCCCTGCGTGCTACCGATCC
CGCTACCACAACCCTCAGTCCGGCTGGA
Found at i:35085179 original size:343 final size:336
Alignment explanation
Indices: 35084406--35085210 Score: 941
Period size: 336 Copynumber: 2.4 Consensus size: 336
35084396 CCGGTTTGAT
* * * ** * * * ** *
35084406 CTTAGACTGGGAATGAACTTCGTATGCATAAGTC-AACTCATGAAACAAGCGTGTGGGTGCTCAG
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAAAC-CACAAAACGAGAGTGCGGGCACTCAA
* * *
35084470 CCAGCCGAAGAGGTATAATGCGCAAGCTGGGGATTGG-CTCGATCCCCTTCTGCGTGCTGCCGGT
65 CCGGCCGAAGAGGCATAATGCGCAAGCTGGGGATTGGCCT-GATCCCCTTCTGCGTGCTGTCGGT
* ** *
35084534 CCCGCTACCACAACCCTCAGTCTGGCTGGGGCTTAGACATGGAATGAAATCCCTATGCCTAAGCC
129 CCCACTACCACAACCCTCAGTCCAGCTGGGGCTTAGACATGGAATGAAATCCCTATCCCTAAGCC
* * ** *
35084599 AACCCACGAAACGGGCATGCGGGCGCTCAATCGGTCAGAGAGGCAGAATACGGGGATTGGCCTGG
194 AACCCACAAAACGGGCATGCGGGCGCTCAACCGGTCAGAGAGGCAGAATACGGGGATCAGCCCGG
* *
35084664 TCCCCCCTGCGTGCTACCGATCCTGCTGCCGTAACCCTCGATCCGGTCTGATCTTAGACTAGGAA
259 TCCCCCCTGCGTGCTACCGATCCTACTGCCGCAACCCTCGATCCGGTCTGATCTTAGACTAGGAA
35084729 TGAACTCCGCATG
324 TGAACTCCGCATG
* * * * *
35084742 CTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAAC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAAACCACAAAACGAGAGTGCGGGCACTCAAC
35084807 CGGCCGAAGAGGCATAATGCGCAAGCTGGGGATTGGCCTGATCCCCTTCTGCGTGCTGTCGGTCC
66 CGGCCGAAGAGGCATAATGCGCAAGCTGGGGATTGGCCTGATCCCCTTCTGCGTGCTGTCGGTCC
* * *
35084872 CACTACCACAACCTTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATCCCTAAGCCAA
131 CACTACCACAACCCTCAGTCCAGCTGGGGCTTAGACATGGAATGAAATCCCTATCCCTAAGCCAA
* * * * **
35084937 CCCACAAAATGGGCGTGCGGGTGCTCAGCCGGTTGGAGAGGCAGAATGCACAAGCCGGGGATCAG
196 CCCACAAAACGGGCATGCGGGCGCTCAACCGGTCAGAGAGGCAGAAT-----A--CGGGGATCAG
* * * * * * *
35085002 CCCGGTCCCTCCTGCGTGCTGCCGATCTTACTGTCGCAACCCTCGATCTGAT-TCGATCTTGGAC
254 CCCGGTCCCCCCTGCGTGCTACCGATCCTACTGCCGCAACCCTCGATCCGGTCT-GATCTTAGAC
* * *
35085066 TGGGAATGAACTCTGTATG
318 TAGGAATGAACTCCGCATG
* * **
35085085 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTTAAACCACAAAATGAGAGTGCGGGCACTCAGT
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAAACCACAAAACGAGAGTGCGGGCACTCAAC
* * * * ** * * *
35085150 CGGTCGGAGAGGCATAACGCACAAGCTGGGGATTAACCCGGTCCCCCTCTGCGTGCTGTCG
66 CGGCCGAAGAGGCATAATGCGCAAGCTGGGGATTGGCCTGATCCCCTTCTGCGTGCTGTCG
35085211 ATCTCGTTGC
Statistics
Matches: 400, Mismatches: 59, Indels: 13
0.85 0.12 0.03
Matches are distributed among these distances:
336 210 0.52
337 4 0.01
341 1 0.00
342 1 0.00
343 184 0.46
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.21
Consensus pattern (336 bp):
CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAAACCACAAAACGAGAGTGCGGGCACTCAAC
CGGCCGAAGAGGCATAATGCGCAAGCTGGGGATTGGCCTGATCCCCTTCTGCGTGCTGTCGGTCC
CACTACCACAACCCTCAGTCCAGCTGGGGCTTAGACATGGAATGAAATCCCTATCCCTAAGCCAA
CCCACAAAACGGGCATGCGGGCGCTCAACCGGTCAGAGAGGCAGAATACGGGGATCAGCCCGGTC
CCCCCTGCGTGCTACCGATCCTACTGCCGCAACCCTCGATCCGGTCTGATCTTAGACTAGGAATG
AACTCCGCATG
Found at i:35085464 original size:26 final size:26
Alignment explanation
Indices: 35085426--35085478 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
35085416 CCAGTCTGAT
35085426 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35085452 CTTAGAC-GTGGAATGAACTCCGTATG
1 CTTAGACTG-GGAATGAACTCCGTATG
35085478 C
1 C
35085479 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35085958 original size:26 final size:26
Alignment explanation
Indices: 35085929--35085982 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
35085919 GATCTGATCT
* *
35085929 TAGACTGGGAATGAACTCTGTATGCC
1 TAGACTGGGAACGAACTCCGTATGCC
*
35085955 TAGACTGGGGACGAACTCCGTATGCC
1 TAGACTGGGAACGAACTCCGTATGCC
35085981 TA
1 TA
35085983 AGTCAACCCA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (26 bp):
TAGACTGGGAACGAACTCCGTATGCC
Found at i:35086599 original size:26 final size:26
Alignment explanation
Indices: 35086563--35086612 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
35086553 TTAGGCTCTC
*
35086563 TATGCTTAGACATGGAATGAACTCCA
1 TATGCTAAGACATGGAATGAACTCCA
35086589 TATGCTAAGACATGGAATGAACTC
1 TATGCTAAGACATGGAATGAACTC
35086613 TGTATGCCTA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.36, C:0.18, G:0.20, T:0.26
Consensus pattern (26 bp):
TATGCTAAGACATGGAATGAACTCCA
Found at i:35086618 original size:26 final size:26
Alignment explanation
Indices: 35086558--35086624 Score: 89
Period size: 26 Copynumber: 2.5 Consensus size: 26
35086548 GTCGGTTAGG
* *
35086558 CTCTCTATGCTTAGACATGGAATGAA
1 CTCTATATGCTAAGACATGGAATGAA
*
35086584 CTCCATATGCTAAGACATGGAATGAA
1 CTCTATATGCTAAGACATGGAATGAA
*
35086610 CTCTGTATGCCTAAG
1 CTCTATATG-CTAAG
35086625 CTAACCCACG
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
26 30 0.86
27 5 0.14
ACGTcount: A:0.31, C:0.21, G:0.19, T:0.28
Consensus pattern (26 bp):
CTCTATATGCTAAGACATGGAATGAA
Found at i:35087159 original size:26 final size:26
Alignment explanation
Indices: 35087130--35087182 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35087120 CCGGTCTGAT
35087130 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
35087156 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
35087182 C
1 C
35087183 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:35088285 original size:26 final size:27
Alignment explanation
Indices: 35088234--35088291 Score: 75
Period size: 26 Copynumber: 2.2 Consensus size: 27
35088224 GGCTCAAAAT
*
35088234 CTTAGACTGGGAATGAACTCCGTATG-
1 CTTAGACTGGGAATGAACTCCATATGC
*
35088260 CTTAGACAT-GGAATGAACTCTATATGC
1 CTTAGAC-TGGGAATGAACTCCATATGC
35088287 CTTAG
1 CTTAG
35088292 CCAACCCACG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
26 22 0.79
27 6 0.21
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.29
Consensus pattern (27 bp):
CTTAGACTGGGAATGAACTCCATATGC
Found at i:35088728 original size:158 final size:158
Alignment explanation
Indices: 35088440--35088731 Score: 422
Period size: 158 Copynumber: 1.8 Consensus size: 158
35088430 AACTCCATAT
* * * *
35088440 GCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCATGCAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAG
* * * * **
35088505 TCGATCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCAATCCCCCCTGCGTGCTGTTGATCC
66 CCGATCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCAATCCCCCCTACGTGCTGCCGATCC
35088570 TGCTGCCACAACCCTCGGTATGACTGGG
131 TGCTGCCACAACCCTCGGTATGACTGGG
* *
35088598 GCTTAGACGTGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAG
* * * * * *
35088663 CCGGTCTGAGAGGTAGAATGCGCAAGCCGAGGATTGGCTCGATCCCCCCTACGTGCTGCCGATCC
66 CCGATCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCAATCCCCCCTACGTGCTGCCGATCC
35088728 TGCT
131 TGCT
35088732 ATCGTAACCC
Statistics
Matches: 116, Mismatches: 18, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
158 116 1.00
ACGTcount: A:0.22, C:0.30, G:0.29, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAG
CCGATCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCAATCCCCCCTACGTGCTGCCGATCC
TGCTGCCACAACCCTCGGTATGACTGGG
Found at i:35088783 original size:158 final size:158
Alignment explanation
Indices: 35088440--35088783 Score: 388
Period size: 158 Copynumber: 2.2 Consensus size: 158
35088430 AACTCCATAT
* * *
35088440 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGTCAACCCATGCAACGAGCGTGCGGGCGCTCA
1 GCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCA
* * * * **
35088504 GTCGATCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCAATCCCCCCTGCGTGCTGTTGATC
65 GCCGATCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCAATCCCCCCTACGTGCTGCCGATC
* * * *
35088569 CTGCTGCCACAACCCTCGGTATGACTGGG
130 CTGCTACCACAACCCTCGATAGGACTGGA
* *
35088598 GCTTAGAC-GTGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCACTCA
1 GCTTAGACTG-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCA
* * * * * *
35088662 GCCGGTCTGAGAGGTAGAATGCGCAAGCCGAGGATTGGCTCGATCCCCCCTACGTGCTGCCGATC
65 GCCGATCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCAATCCCCCCTACGTGCTGCCGATC
* ** * *
35088727 CTGCTATCGTAACCCTCGATCCGGTCT-GA
130 CTGCTACCACAACCCTCGAT-AGGACTGGA
* *
35088756 TCTTAGACTGGGAATGAACTCTGTATGC
1 GCTTAGACTGGGAATGAACTCCGTATGC
35088784 TTAGACTAGG
Statistics
Matches: 153, Mismatches: 29, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
158 149 0.97
159 4 0.03
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.20
Consensus pattern (158 bp):
GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAG
CCGATCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCAATCCCCCCTACGTGCTGCCGATCC
TGCTACCACAACCCTCGATAGGACTGGA
Found at i:35088786 original size:26 final size:26
Alignment explanation
Indices: 35088757--35088809 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
35088747 CCGGTCTGAT
35088757 CTTAGACT-GGGAATGAACTCTGTATG
1 CTTAGACTAGGG-ATGAACTCTGTATG
35088783 CTTAGACTAGGGATGAACTCTGTATG
1 CTTAGACTAGGGATGAACTCTGTATG
35088809 C
1 C
35088810 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCTGTATG
Found at i:35089932 original size:159 final size:157
Alignment explanation
Indices: 35089504--35089957 Score: 427
Period size: 159 Copynumber: 2.9 Consensus size: 157
35089494 AACTCCGTAT
* * * *
35089504 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGGGTGCAAGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCAATGAAACG-GGGTGCAGGCACTCAG
* *
35089569 CCGACCGGAGAGGCAGAATGCGCAAGTCAAGGATC-GGCCCGATCCACCCTAATGTGCTGTCGAT
65 CCGACCGGAGAGGCAGAATGCGCAAGTCGAGGATCAGGCCCG-TCC-CCCTAATGTGCTGCCGAT
* *
35089633 CCTGCTGCCACAACCCTGTGTTCAGTCTGA
128 CCTGCTGCCACAACCCTGTGGTCAGACTGA
* * * * * * * *
35089663 TCTTAGAC-TGGGAATGAACTCCGTAAGCATAAGTCAACCAACGAAACGAGCGTGCAGGCATTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCAATGAAACG-GGGTGCAGGCACTCA
* ** * * ** *
35089727 GCCGGCCAAAGAGGCATAATGCGCAAGTCGAGGATCA-TCCCGGTCCCCCTCTGTGTGCTGCCGG
64 GCCGACCGGAGAGGCAGAATGCGCAAGTCGAGGATCAGGCCC-GTCCCCCT-AATGTGCTGCCGA
* *
35089791 T-CTCGCTGCCACAACCCT-TGGTCCGACTGGG
127 TCCT-GCTGCCACAACCCTGTGGTCAGACT-GA
* * * * *
35089822 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAATCGATGAAACGGGTGTACGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCAATGAAACGGG-GTGCAGGCACTCAG
* * * * *
35089887 CCGACTGGAGAGGCAGAATGCGCAAGCCGGGGA-CAGGCCCAGTCCCCCT-ACGTGCTGCCAATC
65 CCGACCGGAGAGGCAGAATGCGCAAGTCGAGGATCAGGCCC-GTCCCCCTAATGTGCTGCCGATC
*
35089950 TTGCTGCC
129 CTGCTGCC
35089958 GTAACCCTCG
Statistics
Matches: 232, Mismatches: 53, Indels: 22
0.76 0.17 0.07
Matches are distributed among these distances:
157 15 0.06
158 18 0.08
159 197 0.85
160 2 0.01
ACGTcount: A:0.25, C:0.30, G:0.28, T:0.18
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCAATGAAACGGGGTGCAGGCACTCAGC
CGACCGGAGAGGCAGAATGCGCAAGTCGAGGATCAGGCCCGTCCCCCTAATGTGCTGCCGATCCT
GCTGCCACAACCCTGTGGTCAGACTGA
Found at i:35090893 original size:26 final size:26
Alignment explanation
Indices: 35090855--35090907 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35090845 CGGGTTTGAT
35090855 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
35090881 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
35090907 C
1 C
35090908 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:35091011 original size:184 final size:184
Alignment explanation
Indices: 35090696--35091164 Score: 593
Period size: 184 Copynumber: 2.5 Consensus size: 184
35090686 TCCGGCTGGG
* *
35090696 GCTTAGACATGGAATGAACTGCC-TATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCACTCA
1 GCTTAGACATGGAATGAACT-CCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCA
* * *
35090760 GCCGGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGGTCCCTCCTGTGTGCTGTCGATC
65 GCCGGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCTCCTGTGTGCTATCGATC
* ** **
35090825 CTGCTGCCGCAACCCTCGGTCGGGTTTGATCTTAGACTGGGAATGAACTCCATAT
130 CTGCTGCCGCAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCATAT
* **
35090880 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * * * * * * *
35090945 TCGGTCGGAGAGGCAGAATGTGGAAGTCGGGGATCGGCCCGATCACC-CTTGTGTGCTATTGATC
66 CCGGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATC-CCTCCTGTGTGCTATCGATC
* *
35091009 CTGCTGTCGCAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCGTAT
130 CTGCTGCCGCAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCATAT
* * * * ** *
35091064 GCTTAGAC-TAGGGATGAACTCCGTATGCCTAAGTCAACCCACCAAATGAATGTGCGGGCGCTCA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCA
* * *
35091128 GCCGACCAGAGAGGCAGGATGCGCAAGCCAGGGATCG
65 GCCGGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCG
35091165 AACGAGTGGT
Statistics
Matches: 242, Mismatches: 40, Indels: 6
0.84 0.14 0.02
Matches are distributed among these distances:
183 3 0.01
184 237 0.98
185 2 0.01
ACGTcount: A:0.23, C:0.27, G:0.30, T:0.20
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
CCGGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCTCCTGTGTGCTATCGATCC
TGCTGCCGCAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCATAT
Found at i:35091068 original size:26 final size:26
Alignment explanation
Indices: 35091039--35091091 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
35091029 CCAGTCCGAT
35091039 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
35091065 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
35091091 C
1 C
35091092 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:35091800 original size:26 final size:26
Alignment explanation
Indices: 35091762--35091814 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35091752 GGCTCAAAAT
*
35091762 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAACGAACTCCGTATG
35091788 CTTAGACAT-GGAACGAACTCCGTATG
1 CTTAGAC-TGGGAACGAACTCCGTATG
35091814 C
1 C
35091815 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAACGAACTCCGTATG
Found at i:35092149 original size:159 final size:158
Alignment explanation
Indices: 35091787--35092252 Score: 413
Period size: 158 Copynumber: 2.9 Consensus size: 158
35091777 AACTCCGTAT
* * * * * *
35091787 GCTTAGACATGGAACGAACTCCGTATGCCTAAGCCAACCTATGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTACGGGCACTCAG
* *
35091852 CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATAGGCCCGGTCCCCCCTACATGCTATCGATCC
66 CCGACCGAAGAGGCAGAATGCGCAAGCCGGGGATAGACCCGGTCCCCCCTACATGCTATCGATCC
** * ** *
35091917 TGCTTCTGCAACCCTCAGTTCAGTCTGA
131 CACTACCACAACCCTCAGTTCAGGCTGA
* * * * * *
35091945 TCTTAGAC-TGGGAATGAACTCCGTATACATAAGTCAACCCGCGAAACAAGCGTACGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTACGGGCACTCA
* * * * * *
35092009 GCC-AGCCGAAGAGGCATAATGTGCAAGCTGGGGATCGACCCGGTCCCCCTCTACGTGCTATCGG
65 GCCGA-CCGAAGAGGCAGAATGCGCAAGCCGGGGATAGACCCGGTCCCCC-CTACATGCTATCGA
* * * *
35092073 TCCCACTACCACAACCTTCTG-TCTGGCTGGG
128 TCCCACTACCACAACCCTCAGTTCAGGCT-GA
* * ** * * *
35092104 GCTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCCACGAAA-TGGACGTGCAGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAG-CGTACGGGCACTCA
* * * * *
35092168 GCCGATC-AGAGAGGCAGAATGCGTAAGCCGGGGATCAG-CCCGGTCCCCCCTGCGTGCTGTCGA
65 GCCGACCGA-AGAGGCAGAATGCGCAAGCCGGGGAT-AGACCCGGTCCCCCCTACATGCTATCGA
** * *
35092231 TCCTGCTATCGCAACCCTCAGT
128 TCCCACTACCACAACCCTCAGT
35092253 CTGATTCGAT
Statistics
Matches: 240, Mismatches: 58, Indels: 19
0.76 0.18 0.06
Matches are distributed among these distances:
157 2 0.01
158 124 0.52
159 111 0.46
160 3 0.01
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTACGGGCACTCAG
CCGACCGAAGAGGCAGAATGCGCAAGCCGGGGATAGACCCGGTCCCCCCTACATGCTATCGATCC
CACTACCACAACCCTCAGTTCAGGCTGA
Done.