Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 387 of 402
Found at i:35092304 original size:26 final size:26
Alignment explanation
Indices: 35092263--35092341 Score: 122
Period size: 26 Copynumber: 3.0 Consensus size: 26
35092253 CTGATTCGAT
**
35092263 CTTAGACTAGAAATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
* *
35092289 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTAGGGATGAACTCCGTATG
35092315 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
35092341 C
1 C
35092342 CTAAGTCAAC
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 47 1.00
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:35092631 original size:171 final size:171
Alignment explanation
Indices: 35092327--35092794 Score: 455
Period size: 171 Copynumber: 2.7 Consensus size: 171
35092317 TAGACTAGGG
* * * *
35092327 ATGAACTCCGTATGCCTAAGTCAACCCA-TAAAATGAGCTTACGGGCA-CTCAGCCGGTCGGAGA
1 ATGAACTCCGTATGCCTAAGTCAACCCACGAAAA-GAGCGTGCGGG-AGCTCAGCCGGTCGAAGA
* * **
35092390 GGCATAATGCGCAAGCCGGGGATCAGCCCGATCCCCCTCTGCGTGCTGTCAATCCCGCTACCAGT
64 GGCAGAATGCGCAAGCCGGGGATCAGCCCGATCCCCCTCTACGTGCTACCAATCCCGCTACCAGT
* ** *
35092455 CTTGCTGCCACAACCCTCTGTCCGGTTGGGGCCTAGACAT-GGA
129 CTTGCTGCCACAACCCTCGGTCCGGTCCGAGCCTAGA-ATGGGA
*
35092498 ATGAACTCCGTATGCCTAAGCCAACCCACGAAAAGAGCGTGCGGGAGCTCAGCCGG-CTGAAGAG
1 ATGAACTCCGTATGCCTAAGTCAACCCACGAAAAGAGCGTGCGGGAGCTCAGCCGGTC-GAAGAG
* * * * ** * *
35092562 GTAGAATGCGCAAGCCGGGGATCGGCCCGAT-CCCATCCTACGTGCTACCGATCTTGCT-GCTGT
65 GCAGAATGCGCAAGCCGGGGATCAGCCCGATCCCCCT-CTACGTGCTACCAATCCCGCTACCAG-
* * * * * *
35092625 TCTTGCTGCCGCAGCCCTCGGTCTGGTCCGATCTTAGATTGGGA
128 TCTTGCTGCCACAACCCTCGGTCCGGTCCGAGCCTAGAATGGGA
* * * * * *
35092669 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTGAGCCGATCGAAAAGG
1 ATGAACTCCGTATGCCTAAGTCAACCCACGAAAAGAGCGTGCGGGAGCTCAGCCGGTCGAAGAGG
* * ** * * * * *
35092734 CA-AATGCGTAAGCCAGGGATTGGCCTGGTCCCCCTCTGCGTGCTGCCGATCCCGCTACCAG
66 CAGAATGCGCAAGCCGGGGATCAGCCCGATCCCCCTCTACGTGCTACCAATCCCGCTACCAG
35092795 AACCCTCGGT
Statistics
Matches: 241, Mismatches: 47, Indels: 18
0.79 0.15 0.06
Matches are distributed among these distances:
170 48 0.20
171 188 0.78
172 5 0.02
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.19
Consensus pattern (171 bp):
ATGAACTCCGTATGCCTAAGTCAACCCACGAAAAGAGCGTGCGGGAGCTCAGCCGGTCGAAGAGG
CAGAATGCGCAAGCCGGGGATCAGCCCGATCCCCCTCTACGTGCTACCAATCCCGCTACCAGTCT
TGCTGCCACAACCCTCGGTCCGGTCCGAGCCTAGAATGGGA
Found at i:35093365 original size:26 final size:25
Alignment explanation
Indices: 35093327--35093378 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 25
35093317 TCGGTCTGAT
*
35093327 CTTAGACTAGGAATGCACTCCGTATG
1 CTTAGACTAGGAATGAACTCC-TATG
35093353 CTTAGAC-ATGGAATGAACTCCTATG
1 CTTAGACTA-GGAATGAACTCCTATG
35093378 C
1 C
35093379 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
25 6 0.25
26 18 0.75
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (25 bp):
CTTAGACTAGGAATGAACTCCTATG
Found at i:35093873 original size:26 final size:26
Alignment explanation
Indices: 35093823--35093875 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
35093813 CCGATCCAAT
**
35093823 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35093849 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
35093875 C
1 C
35093876 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35094282 original size:183 final size:185
Alignment explanation
Indices: 35094042--35094401 Score: 433
Period size: 184 Copynumber: 2.0 Consensus size: 185
35094032 AACTAGATAA
*
35094042 GGAATGAACTCTATATGCCTAAGCCAACCAACGAAACGAGCGTGCGGGAGCTCAGCCGACT-GGA
1 GGAATGAACTCTACATGCCTAAGCCAACCAACGAAACGAGCGTGCGGGAGCTCAGCCG-CTCGGA
* * * * ** *
35094106 GAGGCAGAATGCGTAAG-CCGGGGACCAACCTAG-TCTCCCCTGTGTGCT-ACAGATCCTGCTGT
65 AAGGCAGAATGCGGAAGTCCGAGGACCAACC-AGATCCCCCCTACGTGCTGACA-ATCCTGCTGC
* ** * *
35094168 CGCAACCCTCGGTTTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAT
128 CACAACCCTCAATTCGGTCTGATCTTAGACTGGGAATGAACGCCGTATGCTTAGACAT
* * *** *
35094226 GGAATGAACTC-CCATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCTTTCAGCCGGTCGGAA
1 GGAATGAACTCTACATGCCTAAGCCAACCAACGAAACGAGCGTGCGGGAGCTCAGCCGCTCGGAA
* * * * * *
35094290 AGGTAGAATGCGGAAGTCCGAGGATCGACCCGATCCCCCCTACGTGCTGTCAATCTTGCTGCCAC
66 AGGCAGAATGCGGAAGTCCGAGGACCAACCAGATCCCCCCTACGTGCTGACAATCCTGCTGCCAC
35094355 AACCCTCAATTCGGTCTGATCTTAGACTGGGAATGAACGCCGTATGC
131 AACCCTCAATTCGGTCTGATCTTAGACTGGGAATGAACGCCGTATGC
35094402 CTAAGTCAAC
Statistics
Matches: 147, Mismatches: 25, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
182 1 0.01
183 58 0.39
184 86 0.59
185 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.27, T:0.20
Consensus pattern (185 bp):
GGAATGAACTCTACATGCCTAAGCCAACCAACGAAACGAGCGTGCGGGAGCTCAGCCGCTCGGAA
AGGCAGAATGCGGAAGTCCGAGGACCAACCAGATCCCCCCTACGTGCTGACAATCCTGCTGCCAC
AACCCTCAATTCGGTCTGATCTTAGACTGGGAATGAACGCCGTATGCTTAGACAT
Found at i:35094515 original size:158 final size:157
Alignment explanation
Indices: 35094217--35094717 Score: 480
Period size: 158 Copynumber: 3.2 Consensus size: 157
35094207 ACTCCGTATG
* * * * **
35094217 CTTAGACAT-GGAATGAACTCC-CATGCCTAAGCCAACCCACGAAA-CGAGCGTGCGGGCTTTCA
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATAG-GTGTGCAGGCGCTCA
* * * * * * * * * *
35094279 GCCGGTCGGAAAGGTAGAATGCGGAAGTCCGAGGATCGACCCGATCCCCCCTACGTGCTGTCAAT
64 GTCGGCCAGAGAGGCAGAATGCGCAAG-CCGAAGATCGGCCCGGTCCCCCCTACGTGCTGTCGAT
* *
35094344 CTTGCTGCCACAACCCTCAATTCGGTCTGAT
128 CCTGCTGCCACAACCCTC-ATTCGGTCTGAC
* * * *
35094375 CTTAGACTGGGAATGAACGCCGTATGCCTAAGTCAACCCACGAAATGAGCGT-T-CGGGCGCTGA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAT-AG-GTGTGCAGGCGCTCA
* * * * *
35094438 GTCGGCCAGAGAGGCATAAT-CGCAAGCC-AGGGATCGGTCCGGTCCCCCTCTGCGTGCTGTCGG
64 GTCGGCCAGAGAGGCAGAATGCGCAAGCCGA-AGATCGGCCCGGTCCCCC-CTACGTGCTGTCGA
* * *
35094501 TCCTGCTACCACAACCCTCAGTCTGG-CTGGAG
127 TCCTGCTGCCACAACCCTCATTC-GGTCT-GAC
*
35094533 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATAGGTGTGCAGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATAGGTGTGCAGGCGCTCAG
* * * *
35094597 TCGGTCGGAGAGGTAGAATGCGCAAGCCGAAGATCGGCCCGGTCCCCCCTATGTGCTGTCGATCC
65 TCGGCCAGAGAGGCAGAATGCGCAAGCCGAAGATCGGCCCGGTCCCCCCTACGTGCTGTCGATCC
* * *
35094662 TGCTGCCACAACCCTCGATCCGATCCGAC
130 TGCTGCCACAACCCTC-ATTCGGTCTGAC
*
35094691 CTTAGACTGGGAATGAACTCTGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
35094718 TTAGACTGGG
Statistics
Matches: 279, Mismatches: 48, Indels: 32
0.78 0.13 0.09
Matches are distributed among these distances:
156 3 0.01
157 27 0.10
158 175 0.63
159 70 0.25
160 2 0.01
161 2 0.01
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.20
Consensus pattern (157 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATAGGTGTGCAGGCGCTCAGT
CGGCCAGAGAGGCAGAATGCGCAAGCCGAAGATCGGCCCGGTCCCCCCTACGTGCTGTCGATCCT
GCTGCCACAACCCTCATTCGGTCTGAC
Found at i:35094676 original size:868 final size:870
Alignment explanation
Indices: 35092977--35094794 Score: 2100
Period size: 868 Copynumber: 2.1 Consensus size: 870
35092967 TCTGATCTTC
* * * **
35092977 GACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCTGGCACTCAACCGGT
1 GACTGGG-ATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTCAACCGAC
* * *
35093042 CGGAGAGGCTGGCCAGAGAGGCATAACGCTCAAGCCGAGGATCAGCCCGATCCCCCTCTACATGT
65 CGGAGAGGCTGGCCAGAAAGGCATAACGCGCAAGCCGAGGATCAGCCCGATCCCCCTCTACATGC
** * * * ** *
35093107 TGTCGATCCCGCTGTCGGTCCTACTGCCACAAACCTCGACTCGACTGGGGCCTAGACATGGAATG
130 TACCAATCCCGCTGCCAGTCCTACTGCCACAAACCTCGACTCGACTGGGAACTAGACAAGGAATG
* * * * *
35093172 AACTCCGTATGCCCAAGCCAACCCATGGAACGAGCGTGGGGGAGCTCAACCGATCGGAAAGGCAA
195 AACTCCATATGCCCAAGCCAACCAACGAAACGAGCGTGCGGGAGCTCAACCGATCGGAAAGGCAA
* * * *
35093237 AATGCACAAGTCGAGGATCAGCCCGGTCCCCCCTACATGCTATCGATCCTGCTGTTGGTCCTGCT
260 AATGCACAAGCCGAGGACCAACCCAGTCCCCCCTACATGCTATCGATCC-GC--TTGG-CCTGCT
*
35093302 GCTGCAACCCTCGGTTCGGTCTGATCTTAGACTAGGAATGCACTCCGTATGCTTAGACATGGAAT
321 GCTGCAACCCTCGGTTCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACATGGAAT
* * *
35093367 GAACTCCTATGCCTAAGCCAACCCACGAAACGAGCATGCGGTTGCTCAGCTGGCCGGAGAGGCAG
386 GAACTCCCATGCCTAAGCCAACCCACGAAACGAGCATGCGGTT-CTCAGCCGGCCGGAAAGGCAG
* * * ** * * *
35093432 AATAAGCAATTCGAGATCAACCTAGTCCCCTTCGTGCTGTTGATCGTGCTATCGCAACCCTTAGT
450 AATAAGCAATCCGAGATCAACCGAGTCCCCTACGTGCTGTCAATCGTGCTACCACAACCCTAAGT
*
35093497 CTGGTCTGATCTTAGACTGGGAATAAACTCCGACTGCCTAAGTCAACCCACGAAACCAGCGTGCG
515 CTGGTCTGATCTTAGACTGGGAATAAACGCCGACTGCCTAAGTCAACCCACGAAACCAGCGTGCG
* * * **
35093562 GGAGATGAGCAGGCCGGAGAGGCATAATGCGTAAGTCGAGGATCGACCCGAACCCTTTCTACGTG
580 GGAGATGAGCAGGCCAGAGAGGCATAATGCGCAAGCCGAGGATCGACCCGAACCCCCTCTACGTG
* * * * *
35093627 CTATCGATCCGCTGCCATAACCCTCGGTCTGGTTGGGGCTTAGACATGGAATGAACTCCCTATGC
645 CTATCGATCCGCTACCACAACCCTCAGTCTGGCTGGAGCTTAGACATGGAATGAACTCCCTATGC
* *
35093692 CTAAGCCAACCCACGAAACGAGTGTGCAGGCGCTCAACCGACTGGAAAGGTAGAATACGTAAGCC
710 CTAAGCCAACCCACGAAAAGAGTGTGCAGGCGCTCAACCGACTGGAAAGGTAGAATACGCAAGCC
* * * *
35093757 GAAGATTACGTCGGTCCCCCCTGCATGCTACCGATCCTACTATCGCAACCCTCGATCCGATCCAA
775 GAAGATTACGCCGGTCCCCCCTACATGCTACCGATCCTACTACCACAACCCTCGATCCGATCCAA
* *
35093822 TCTTAGACTGGGAATGAACTTTGTATGCTTA
840 CCTTAGACTGGGAATGAACTCTGTATGCTTA
35093853 GACTAGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTCAACCGAC
1 GACT-GGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTCAACCGAC
** * * * * * *
35093918 CGGAGAGGCTGATC-GAAAAGGTATAATGCGCAAGCCG-GAGATCAGCTCGATCCCCTTTTGCAT
65 CGGAGAGGCTGGCCAG-AAAGGCATAACGCGCAAGCCGAG-GATCAGCCCGATCCCCCTCTACAT
* * *
35093981 GCTACCAATCCCGCTGCCAGTCCTACTGCCACAACCCTCTGTCT-GACTGGGAACTAGATAAGGA
128 GCTACCAATCCCGCTGCCAGTCCTACTGCCACAAACCTC-GACTCGACTGGGAACTAGACAAGGA
* * * *
35094045 ATGAACTCTATATGCCTAAGCCAACCAACGAAACGAGCGTGCGGGAGCTCAGCCGA-CTGGAGAG
192 ATGAACTCCATATGCCCAAGCCAACCAACGAAACGAGCGTGCGGGAGCTCAACCGATC-GGAAAG
* ** * * * ***
35094109 GCAGAATGCGTAAGCCGGGGACCAACCTAGTCTCCCCTGTGTGCTA-CAGAT-C-C-T-G-CTG-
256 GCAAAATGCACAAGCCGAGGACCAACCCAGTCCCCCCTACATGCTATC-GATCCGCTTGGCCTGC
* *
35094167 T-C-GCAACCCTCGGTTTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAA
320 TGCTGCAACCCTCGGTTCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACATGGAA
* * *
35094230 TGAACTCCCATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCTT-TCAGCCGGTCGGAAAGGT
385 TGAACTCCCATGCCTAAGCCAACCCACGAAACGAGCATGC-GG-TTCTCAGCCGGCCGGAAAGGC
** * * * *
35094294 AGAATGCGGAAGTCCGAGGATCGACCCGA-TCCCCCCTACGTGCTGTCAATCTTGCTGCCACAAC
448 AGAATAAGCAA-TCCGA-GATC-AACCGAGT--CCCCTACGTGCTGTCAATCGTGCTACCACAAC
* * *
35094358 CCTCAATTC-GGTCTGATCTTAGACTGGGAATGAACGCCGTA-TGCCTAAGTCAACCCACGAAAT
508 CCT-AAGTCTGGTCTGATCTTAGACTGGGAATAAACGCCG-ACTGCCTAAGTCAACCCACGAAAC
* * * * ** **
35094421 GAGCGTTCGGGCGCTGAGTC-GGCCAGAGAGGCATAAT-CGCAAGCC-AGGGATCGGTCCGGTCC
571 CAGCGTGCGGGAGATGAG-CAGGCCAGAGAGGCATAATGCGCAAGCCGA-GGATCGACCCGAACC
* * *
35094483 CCCTCTGCGTGCTGTCGGTCCTGCTACCACAACCCTCAGTCTGGCTGGAGCTTAGACATGGAATG
634 CCCTCTACGTGCTATCGATCC-GCTACCACAACCCTCAGTCTGGCTGGAGCTTAGACATGGAATG
** * *
35094548 AACTCCCTATGCCTAAGCCAACCCACGAAATAG-GTGTGCAGGCGCTCAGTCG-GTCGGAGAGGT
698 AACTCCCTATGCCTAAGCCAACCCACGAAA-AGAGTGTGCAGGCGCTCAACCGACT-GGAAAGGT
* ** ** * *
35094611 AGAATGCGCAAGCCGAAGA-T-CGGCCCGGTCCCCCCTATGTGCTGTCGATCCTGCTGCCACAAC
761 AGAATACGCAAGCCGAAGATTAC-G-CCGGTCCCCCCTACATGCTACCGATCCTACTACCACAAC
*
35094674 CCTCGATCCGATCCGACCTTAGACTGGGAATGAACTCTGTATGCTTA
824 CCTCGATCCGATCCAACCTTAGACTGGGAATGAACTCTGTATGCTTA
* * * * *
35094721 GACTGGGGATGAACTCCGTGTCCCTAAGTCAACCCATGAAATGAGTGTGCGGGCGCTCAACCGAC
1 GACT-GGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTCAACCGAC
*
35094786 CAGAGAGGC
65 CGGAGAGGC
35094795 AGAATGCACA
Statistics
Matches: 796, Mismatches: 124, Indels: 52
0.82 0.13 0.05
Matches are distributed among these distances:
864 118 0.15
865 7 0.01
866 10 0.01
867 43 0.05
868 356 0.45
869 7 0.01
870 1 0.00
873 1 0.00
875 5 0.01
876 242 0.30
877 6 0.01
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (870 bp):
GACTGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTCAACCGACC
GGAGAGGCTGGCCAGAAAGGCATAACGCGCAAGCCGAGGATCAGCCCGATCCCCCTCTACATGCT
ACCAATCCCGCTGCCAGTCCTACTGCCACAAACCTCGACTCGACTGGGAACTAGACAAGGAATGA
ACTCCATATGCCCAAGCCAACCAACGAAACGAGCGTGCGGGAGCTCAACCGATCGGAAAGGCAAA
ATGCACAAGCCGAGGACCAACCCAGTCCCCCCTACATGCTATCGATCCGCTTGGCCTGCTGCTGC
AACCCTCGGTTCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACATGGAATGAACT
CCCATGCCTAAGCCAACCCACGAAACGAGCATGCGGTTCTCAGCCGGCCGGAAAGGCAGAATAAG
CAATCCGAGATCAACCGAGTCCCCTACGTGCTGTCAATCGTGCTACCACAACCCTAAGTCTGGTC
TGATCTTAGACTGGGAATAAACGCCGACTGCCTAAGTCAACCCACGAAACCAGCGTGCGGGAGAT
GAGCAGGCCAGAGAGGCATAATGCGCAAGCCGAGGATCGACCCGAACCCCCTCTACGTGCTATCG
ATCCGCTACCACAACCCTCAGTCTGGCTGGAGCTTAGACATGGAATGAACTCCCTATGCCTAAGC
CAACCCACGAAAAGAGTGTGCAGGCGCTCAACCGACTGGAAAGGTAGAATACGCAAGCCGAAGAT
TACGCCGGTCCCCCCTACATGCTACCGATCCTACTACCACAACCCTCGATCCGATCCAACCTTAG
ACTGGGAATGAACTCTGTATGCTTA
Found at i:35095258 original size:26 final size:26
Alignment explanation
Indices: 35095229--35095281 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
35095219 TCGGTCCGAT
* *
35095229 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
35095255 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35095281 C
1 C
35095282 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35096852 original size:26 final size:26
Alignment explanation
Indices: 35096801--35096853 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
35096791 CCGGTCCGAT
**
35096801 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
35096827 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
35096853 C
1 C
35096854 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:35097182 original size:159 final size:156
Alignment explanation
Indices: 35096826--35097328 Score: 487
Period size: 158 Copynumber: 3.2 Consensus size: 156
35096816 AACTCTGTAT
* *
35096826 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACGCACGGAACGAGCGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
*
35096891 TCGATCGGAGAGGCAGAATGCATAAGCTGGGGATCGACTCGATCCCCTCTGCGTGCTGTCGATCC
66 TCGATCGGAGAGGCAGAATGCACAAGCTGGGGATCGACTCGATCCCCTCTGCGTGCTGTCGATCC
* * *
35096956 TGCTATTGCAACCCTCGGTGTAGTCTGA
131 TGCCA-T-CAACCCTCGGTGCAGGCTGA
* * * * ** *
35096984 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCTTACGGGCTTTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCA
*
35097048 GTCGA-CTGGAGAGGCATAATGCACAAGCTGGGGATCGACTCGATCCCCTTCTGCGTGCTGTCGG
65 GTCGATC-GGAGAGGCAGAATGCACAAGCTGGGGATCGACTCGATCCCC-TCTGCGTGCTGTC-G
* * *
35097112 TCTCCCTGCCA-CAACCCTCGGT-CCGGCTGGG
127 -AT-CCTGCCATCAACCCTCGGTGCAGGCT-GA
* * * * *
35097143 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGGGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
** ** * * * * * * * *
35097208 TCGGCCGGAGAGATAGAATGCGCAAGCCGAGGATTGGCTCGGTCCCCCCTGCGTGCTGCCGATCC
66 TCGATCGGAGAGGCAGAATGCACAAGCTGGGGATCGACTCGATCCCCTCTGCGTGCTGTCGATCC
** * *
35097273 TGCTGCCGCAACCCTCGATTC-GGTCTGA
131 TGC--CATCAACCCTCGGTGCAGG-CTGA
* *
35097301 TCTTAGAC-TGGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCATATGC
35097329 TTAGACTGGG
Statistics
Matches: 285, Mismatches: 45, Indels: 30
0.79 0.12 0.08
Matches are distributed among these distances:
155 5 0.02
156 1 0.00
157 5 0.02
158 148 0.52
159 116 0.41
160 3 0.01
161 1 0.00
162 6 0.02
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.21
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
TCGATCGGAGAGGCAGAATGCACAAGCTGGGGATCGACTCGATCCCCTCTGCGTGCTGTCGATCC
TGCCATCAACCCTCGGTGCAGGCTGA
Found at i:35097338 original size:26 final size:26
Alignment explanation
Indices: 35097302--35097354 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
35097292 TCGGTCTGAT
35097302 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
35097328 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35097354 C
1 C
35097355 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35104485 original size:26 final size:26
Alignment explanation
Indices: 35104446--35104499 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 26
35104436 GGTCTAATCT
35104446 TAGAATGGGAATGAACACCGTATGCC
1 TAGAATGGGAATGAACACCGTATGCC
* * * *
35104472 TAGACTGGGGATGAACTCCGTGTGCC
1 TAGAATGGGAATGAACACCGTATGCC
35104498 TA
1 TA
35104500 AGTCAATGCA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.20, G:0.30, T:0.22
Consensus pattern (26 bp):
TAGAATGGGAATGAACACCGTATGCC
Found at i:35104852 original size:184 final size:184
Alignment explanation
Indices: 35104653--35105022 Score: 490
Period size: 184 Copynumber: 2.0 Consensus size: 184
35104643 TCTGACTGGG
* * * *
35104653 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAACAAGCGTGCGGGCGCTCAA
* * * *
35104718 TCGGCCAGAGAGGCAAAATGTGCAAGTTGGGGATCAGCCCGATCCCCCCTACGTACTGCCGATCC
66 TCGACCAGAGAGGCAAAATGCGCAAGTCGGGGATCAGCCCGATCCCCCCTACATACTGCCGATCC
* * *
35104783 TACTGCCACAACCCTCGGT-CTGATCCGATCATAGACTGGGAATGAACTTCATAT
131 TACTGCCACAACCCTCAGTCCAG-TCCGATCATAGACTGGGAATGAACTCCATAT
35104837 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAACAAGCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAACAAGCGTGCGGGCGCTCAA
** * * ** * * * *
35104902 TCGACTGGAGAGGTAGAATGCGCAAGTCGGGGATTGGCCCGATCCCCCCTGCATGCTGTCGATCT
66 TCGACCAGAGAGGCAAAATGCGCAAGTCGGGGATCAGCCCGATCCCCCCTACATACTGCCGATCC
* * * * *
35104967 TGCTGCCGCAACCGTCAGTCCAGTCTGATCTTAGACTGGGAATGAACTCCATAT
131 TACTGCCACAACCCTCAGTCCAGTCCGATCATAGACTGGGAATGAACTCCATAT
35105021 GC
1 GC
35105023 CTAAGTCAAC
Statistics
Matches: 159, Mismatches: 26, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
184 157 0.99
185 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.21
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAACAAGCGTGCGGGCGCTCAA
TCGACCAGAGAGGCAAAATGCGCAAGTCGGGGATCAGCCCGATCCCCCCTACATACTGCCGATCC
TACTGCCACAACCCTCAGTCCAGTCCGATCATAGACTGGGAATGAACTCCATAT
Found at i:35105260 original size:159 final size:157
Alignment explanation
Indices: 35104837--35105274 Score: 452
Period size: 159 Copynumber: 2.8 Consensus size: 157
35104827 AACTTCATAT
* * *** *
35104837 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAACAAGCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAATGGGTGTGCGGGC-CTCAA
* * * * * *
35104902 TCGACTGGAGAGGTAGAATGCGCAAGTCGGGGATTGGCCCGATCCCCCCTGCATGCTGTCGATCT
65 CCGACTGGAGAGGTAAAATGCGCAAGTCGGGGATTGGCTCGGTCCCCCCTGCGTGCTGCCGATCT
* * * *
35104967 TGCTGCCGCAACCGTCAGTCCAGTCTGA
130 CGCTGCCACAACCCTCAGTCCAGGCTGA
* * *
35104995 TCTTAGAC-TGGGAATGAACTCCATATGCCTAAGTCAACCCATGAAATGAGCGTGTAGC-TG-CT
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCATGAAATG-G-GTGT-GCGGGCCT
* * * * * *
35105057 GAGCCGACCGGAGAGGTATAATGCGCAAGTCAGAGATTGGCTCGGTCCCCCTCTGCGTGCTGCCG
62 CAACCGACTGGAGAGGTAAAATGCGCAAGTCGGGGATTGGCTCGGTCCCCC-CTGCGTGCTGCCG
* * * *
35105122 GTCTCGCTGCCACAACCCTCGGT-CTGGCTAGG
126 ATCTCGCTGCCACAACCCTCAGTCCAGGCT-GA
*
35105154 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGTGTGCGGGCACTCAA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAATGGGTGTGCGGGC-CTCAA
* * * * * *
35105219 CCGGCTGGAGAGGCAAAATGCGCAAGCCGGGGATCGACTCGGTTCCCCCTGCGTGC
65 CCGACTGGAGAGGTAAAATGCGCAAGTCGGGGATTGGCTCGGTCCCCCCTGCGTGC
35105275 GATCGATCCT
Statistics
Matches: 226, Mismatches: 44, Indels: 20
0.78 0.15 0.07
Matches are distributed among these distances:
156 2 0.01
157 6 0.03
158 97 0.43
159 114 0.50
160 5 0.02
161 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAATGGGTGTGCGGGCCTCAAC
CGACTGGAGAGGTAAAATGCGCAAGTCGGGGATTGGCTCGGTCCCCCCTGCGTGCTGCCGATCTC
GCTGCCACAACCCTCAGTCCAGGCTGA
Found at i:35105364 original size:26 final size:26
Alignment explanation
Indices: 35105314--35105364 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
35105304 CGATCCGATC
*
35105314 TTAGACTGGGAATCAACTTCATATGG
1 TTAGACTGGGAATCAACTCCATATGG
* * *
35105340 TTAGACTGGGGATGAACTCCGTATG
1 TTAGACTGGGAATCAACTCCATATG
35105365 CCTAAGTCAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATCAACTCCATATGG
Found at i:35106074 original size:26 final size:26
Alignment explanation
Indices: 35106036--35106086 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
35106026 GGCTCAAAAT
35106036 CTTAGACAGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
*
35106062 CTTAGACATGGAATGAACTCCGTAT
1 CTTAGACAGGGAATGAACTCCGTAT
35106087 ACCTAAGCCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.25
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Found at i:35106420 original size:159 final size:158
Alignment explanation
Indices: 35106061--35106478 Score: 439
Period size: 158 Copynumber: 2.6 Consensus size: 158
35106051 AACTCCGTAT
* * *
35106061 GCTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAA
** * * * *
35106126 CTGGCCAGAGAGGCAAAATGTGCAAGCCGGGGATCGGCTCGATCCCCCCTACATGCTATCGATCC
66 CCAGCCAGAGAGGCAAAATGAGCAAGCCGAGGATCGGCCCGATCCCCCCTACATGCTACCGATCC
* * * *
35106191 TACTGTCGCAACCCTTGGTCTGGTCTGA
131 CACTGCCACAACCCTAGGTCTGGTCTGA
* * * * *
35106219 TCTTAAAC-TAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTACGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCA
* * * ** * * * * *
35106283 GCCAGCTAGAGAGGCATAATGAGCGCGCCGAGGATCGGCCCGGTCCCCCTTTCCGTGCTGCC-AG
65 ACCAGCCAGAGAGGCAAAATGAGCAAGCCGAGGATCGGCCCGATCCCCC-CTACATGCTACCGA-
* *
35106347 TCCCACTGCCACAATCCTAGGTCTGGT-TGGG
128 TCCCACTGCCACAACCCTAGGTCTGGTCT-GA
* * * *
35106378 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAA
* * *
35106443 CCGGCC-GAGAGGCAGAATGCGCAAGCCGAGGATCGG
66 CCAGCCAGAGAGGCAAAATGAGCAAGCCGAGGATCGG
35106479 TCCAGTCCAC
Statistics
Matches: 209, Mismatches: 46, Indels: 10
0.79 0.17 0.04
Matches are distributed among these distances:
157 1 0.00
158 120 0.57
159 87 0.42
160 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAA
CCAGCCAGAGAGGCAAAATGAGCAAGCCGAGGATCGGCCCGATCCCCCCTACATGCTACCGATCC
CACTGCCACAACCCTAGGTCTGGTCTGA
Found at i:35106572 original size:26 final size:26
Alignment explanation
Indices: 35106536--35106588 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35106526 CCAGTCCGAT
35106536 CTTAGACTGGGAATGAA-TTCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
*
35106562 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
35106588 C
1 C
35106589 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:35107494 original size:26 final size:26
Alignment explanation
Indices: 35107443--35107495 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
35107433 CCGGTTCAAT
*
35107443 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTACATATG
*
35107469 CTTAGACTAGGG-ATGAACTACGTATG
1 CTTAGACT-GGGAATGAACTACATATG
35107495 C
1 C
35107496 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACATATG
Found at i:35108011 original size:26 final size:26
Alignment explanation
Indices: 35107970--35108020 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
35107960 CCAGTCTGAT
35107970 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
35107996 CTTAGACTAGGG-ATGAACTTCGTAT
1 CTTAGACT-GGGAATGAACTCCGTAT
35108021 ACCTAAGTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35109176 original size:158 final size:155
Alignment explanation
Indices: 35108729--35109179 Score: 387
Period size: 158 Copynumber: 2.9 Consensus size: 155
35108719 CTTAGACACA
* * ** **
35108729 GAATGAACTCTATATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAACCGGTCAAAGA
1 GAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAACCGACCGGAGA
* * ** *
35108794 AGCAAAATGCGCAAGTCGAGGATCGGCCCGGTCACCCTTGCATGT--TGTCAATCCTGCTACCGT
66 AGCAAAATGCGCAAG-CGGGGATCGGCCCGGTC-CCC--CCATGTGCTGTCAATCCT-CTATTGC
* * *
35108857 AACCCTCGGTCTGGTCCGATCTTAGACTGG
126 AACCCTCGGTCTGGTCAGAGCATAGACTGG
* * ** * *
35108887 GAATGAACTCCGTATGCCTAAGTCAATGCACGAAACGAGCGTGCGGGCGCTGAACC-AGCCGGA-
1 GAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAACCGA-CCGGAG
* * * * **
35108950 AAGCATAATGCGCAAGCTGGGGATCGGCCCGATCCCCCTCTACGTGCTGCCGGTCC-C-ATTGCC
65 AAGCAAAATGCGCAAGC-GGGGATCGGCCCGGTCCCCC-C-ATGTGCTGTCAATCCTCTATTG--
*
35109013 ACAACCCTCGGTCTGG-CTAGGGCATAGACAT-G
125 -CAACCCTCGGTCTGGTC-AGAGCATAGAC-TGG
* * * * *
35109045 GAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGTGTGCAGGCACTCAACCGACCGGAGA
1 GAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAACCGACCGGAGA
* *
35109110 GGCAGAATGCGCAAGCAGGGGATCGGCCCGGTCCCCCCAATGTGCTGTCAATCCTACTATTGCAA
66 AGCAAAATGCGCAAGC-GGGGATCGGCCCGGTCCCCCC-ATGTGCTGTCAATCCT-CTATTGCAA
35109175 CCCTC
128 CCCTC
35109180 TATTCGGTCC
Statistics
Matches: 231, Mismatches: 46, Indels: 32
0.75 0.15 0.10
Matches are distributed among these distances:
155 3 0.01
156 8 0.03
157 30 0.13
158 149 0.65
159 36 0.16
160 1 0.00
161 4 0.02
ACGTcount: A:0.25, C:0.31, G:0.26, T:0.18
Consensus pattern (155 bp):
GAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAACCGACCGGAGA
AGCAAAATGCGCAAGCGGGGATCGGCCCGGTCCCCCCATGTGCTGTCAATCCTCTATTGCAACCC
TCGGTCTGGTCAGAGCATAGACTGG
Found at i:35109815 original size:26 final size:26
Alignment explanation
Indices: 35109777--35109829 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
35109767 GGCTCAAACT
35109777 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35109803 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
35109829 C
1 C
35109830 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35110147 original size:26 final size:26
Alignment explanation
Indices: 35110118--35110170 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
35110108 CCAGTCCGAT
35110118 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
35110144 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35110170 C
1 C
35110171 CTGAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35110342 original size:26 final size:26
Alignment explanation
Indices: 35110313--35110365 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35110303 CCGGTCTGAT
*
35110313 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
35110339 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
35110365 C
1 C
35110366 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:35110865 original size:26 final size:26
Alignment explanation
Indices: 35110814--35110866 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
35110804 CCGGTTCGAT
*
35110814 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTACATATG
*
35110840 CTTAGACTAGGG-ATGAACTACGTATG
1 CTTAGACT-GGGAATGAACTACATATG
35110866 C
1 C
35110867 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACATATG
Found at i:35114321 original size:26 final size:26
Alignment explanation
Indices: 35114291--35114343 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
35114281 GTTGACTTAG
35114291 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* * *
35114317 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
35114343 G
1 G
35114344 ATCGAACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:35114702 original size:159 final size:158
Alignment explanation
Indices: 35114317--35114731 Score: 415
Period size: 159 Copynumber: 2.6 Consensus size: 158
35114307 CCCAATCTAA
* * ** * *
35114317 GCATATGGAGTTCATTCCCAGTCTAAGATCGAACTGGATCGAGGGTTATGGTAGCAGGATCGGTA
1 GCATACGGAGTTCATT-CCAGTCTAAGACCGAACCAGATCGAGGGTTGTGGTAGCAGGATCGATA
* * * * *
35114382 GCACGTAG-GGGGGA-CTGGATCGATCCCCAGCTTGCGCATTCTGCCTCTCCTACCGGCTGAGCG
65 GCACGCAGAGGGGGATCAGG-TCGATCCCCAGCTTGCGCATTATGCCTCTCCGACCGGCTCAGCG
* *
35114445 CCCGCATGCCCATTTCGTGGGCTGGCTTAG
129 CCCGCACGCCCATTTCGTGGGCTGACTTAG
* * * * * * * * * *
35114475 GCATAGGGTGTTCATTCCATGTCTAAGCCCTAGCCAGACCGAGGGTTGTGGTAACGGGACCGACA
1 GCATACGGAGTTCATTCCA-GTCTAAGACCGAACCAGATCGAGGGTTGTGGTAGCAGGATCGATA
* * ***
35114540 GCACGCAGAGGGGGATCAGGTCGATCCCCAGCTTGCGCATTATTCCTCTTCGGTGGGCTCAGCGC
65 GCACGCAGAGGGGGATCAGGTCGATCCCCAGCTTGCGCATTATGCCTCTCCGACCGGCTCAGCGC
* * *
35114605 CCGTACGCTCATTTCGTGGGTTGACTTAG
130 CCGCACGCCCATTTCGTGGGCTGACTTAG
* * * * *
35114634 GCATACGGAGTTCATTGCCAGTCTAAGAGCGAACCAGATTGAGGGTTGCGGCAGCACGATCGATA
1 GCATACGGAGTTCATT-CCAGTCTAAGACCGAACCAGATCGAGGGTTGTGGTAGCAGGATCGATA
* *
35114699 GCA--CATAGGTGGGATCGGGTCGATCCCCAGCTT
65 GCACGCAGAGG-GGGATCAGGTCGATCCCCAGCTT
35114732 AAGCATTCTA
Statistics
Matches: 205, Mismatches: 47, Indels: 10
0.78 0.18 0.04
Matches are distributed among these distances:
157 8 0.04
158 75 0.37
159 116 0.57
160 6 0.03
ACGTcount: A:0.20, C:0.26, G:0.31, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCAGTCTAAGACCGAACCAGATCGAGGGTTGTGGTAGCAGGATCGATAG
CACGCAGAGGGGGATCAGGTCGATCCCCAGCTTGCGCATTATGCCTCTCCGACCGGCTCAGCGCC
CGCACGCCCATTTCGTGGGCTGACTTAG
Found at i:35114829 original size:26 final size:26
Alignment explanation
Indices: 35114792--35114844 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
35114782 GTTAGCTTAG
*
35114792 GCATACGAAGTTCGTT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
35114818 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
35114844 G
1 G
35114845 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:35115542 original size:26 final size:26
Alignment explanation
Indices: 35115513--35115565 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
35115503 GTTGACTTAG
* *
35115513 GCATACGGAGTTTATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
35115539 GCATACAGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
35115565 G
1 G
35115566 ATCGGACTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:35116027 original size:26 final size:26
Alignment explanation
Indices: 35115975--35116027 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
35115965 GTCGGGTTAG
*
35115975 GCATACGGAGTTCATTCCATGTTTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
35116001 GCATACGGGGTTCATTTCCA-GTCTAA
1 GCATACGGAGTTCA-TTCCATGTCTAA
35116027 G
1 G
35116028 ATTGGATCGT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:35118213 original size:159 final size:160
Alignment explanation
Indices: 35117965--35118409 Score: 469
Period size: 159 Copynumber: 2.8 Consensus size: 160
35117955 GTAGCAAGAT
* * *
35117965 CGATAGCACGCA-AG-GCGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGCTAGTT
1 CGATAGCACGCAGAGAG-GGACCGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGCCAGTT
* * * * * *
35118028 GAGCGCCCGTACGCCCATTTCATGGGTTGACTTTGTCATAGGGAGTTCATTCCATGTCTAAGCCC
65 GAGCACCCGTACGCTCATTTCGTGGGTTGACTTTGGCATACGGAGTTCATTCCATGTCTAAGCAC
* *
35118093 CAGT-CGGA-TCGAGGGTTGTGGCAGC-GAGAC
130 CAGTCCGGACT-GAGGGTTGCGGCAACAG-GAC
* * * * * * *
35118123 CGGTAGCACGCAGAGAGGGACCGGGTCGATCCCCGGCTTATGCATTATGCCTCTCCGACCAGCTC
1 CGATAGCACGCAGAGAGGGACCGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGCCAGTTG
* * * * *
35118188 AGCACCTGTATGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCA-GTCTAAG-AT
66 AGCACCCGTACGCTCATTTCGTGGGTTGACTTTGGCATACGGAGTTCATT-CCATGTCTAAGCAC
* *
35118251 CGGTCCGGACTGAGGGTTGCGGCAACAGGAT
130 CAGTCCGGACTGAGGGTTGCGGCAACAGGAC
* * * * *
35118282 CGACAGCACGTAG-GAGGGGATCGGGCCGATCCCTGGCTTGTGCATTCTGCCTCTCCGGTC-GAT
1 CGATAGCACGCAGAGA-GGGACCGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGCCAG-T
* *
35118345 TGAGCACCCGCACGCTCGTTTCGTGGGTT-AGCTTTGGCATACGGAGTTCATTCCATGTCTAAGC
64 TGAGCACCCGTACGCTCATTTCGTGGGTTGA-CTTTGGCATACGGAGTTCATTCCATGTCTAAGC
35118409 A
128 A
35118410 TACGGAGTTC
Statistics
Matches: 233, Mismatches: 43, Indels: 20
0.79 0.15 0.07
Matches are distributed among these distances:
158 21 0.09
159 205 0.88
160 7 0.03
ACGTcount: A:0.18, C:0.28, G:0.30, T:0.24
Consensus pattern (160 bp):
CGATAGCACGCAGAGAGGGACCGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGCCAGTTG
AGCACCCGTACGCTCATTTCGTGGGTTGACTTTGGCATACGGAGTTCATTCCATGTCTAAGCACC
AGTCCGGACTGAGGGTTGCGGCAACAGGAC
Found at i:35118417 original size:26 final size:26
Alignment explanation
Indices: 35118381--35118433 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
35118371 GTTAGCTTTG
35118381 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
35118407 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
35118433 G
1 G
35118434 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:35118790 original size:26 final size:26
Alignment explanation
Indices: 35118761--35118813 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
35118751 GTTGACTTAG
35118761 GCATACAAAGTTCATCCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
** *
35118787 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
35118813 G
1 G
35118814 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAAAGTTCATCCCCAGTCTAA
Found at i:35120950 original size:158 final size:158
Alignment explanation
Indices: 35120598--35120951 Score: 435
Period size: 158 Copynumber: 2.2 Consensus size: 158
35120588 CCTATTTCAT
** * **
35120598 GGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCAGGCAGACTGAGGGTTGTGGTAGT
1 GGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGACCAGGCAGACTGAGGGTTGCAGTAGT
* * * *
35120663 GGGACCGGCAGCACGCAGAGGAGGACCGGGCTGATCCTCGACTTTCGCATTATGCCTCTCCGGCT
66 AGGACCGACAGCACGCAGAGGAGGACCGGGCTGATCCCCGACTTGCGCATTATGCCTCTCCGGCT
* *
35120728 AGCTCAGCACCCGCATGCTTGTTTAGTG
131 AGCTCAGCACCCGCACGCTCGTTTAGTG
** * * *
35120756 GGTTAACTTAGGCATACAGAGTTCATTCCCA-ATCTAAGATCAGATCAGACTGAGGGTTGCAGTA
1 GGTTGGCTTAGGCATACAGAGTTCATT-CCATGTCTAAGACCAG-GCAGACTGAGGGTTGCAGTA
* * * * * * *
35120820 GTAGGATCGACAGCACGTAG-GGGGGATCGGG-TCGGTCCCCGGCTTGCGCATTCTGCCTCTCCG
64 GTAGGACCGACAGCACGCAGAGGAGGACCGGGCT-GATCCCCGACTTGCGCATTATGCCTCTCCG
* *
35120883 GCTAGCTCAGCGCCCGCACGCTCGTTTTGTG
128 GCTAGCTCAGCACCCGCACGCTCGTTTAGTG
35120914 GGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAG
1 GGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAG
35120952 CATATGGAGT
Statistics
Matches: 164, Mismatches: 28, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
157 4 0.02
158 124 0.76
159 36 0.22
ACGTcount: A:0.19, C:0.25, G:0.31, T:0.25
Consensus pattern (158 bp):
GGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGACCAGGCAGACTGAGGGTTGCAGTAGT
AGGACCGACAGCACGCAGAGGAGGACCGGGCTGATCCCCGACTTGCGCATTATGCCTCTCCGGCT
AGCTCAGCACCCGCACGCTCGTTTAGTG
Found at i:35122120 original size:14 final size:14
Alignment explanation
Indices: 35122101--35122128 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
35122091 GGCCTGCAGC
35122101 ATGCATTATGCCTT
1 ATGCATTATGCCTT
35122115 ATGCATTATGCCTT
1 ATGCATTATGCCTT
35122129 TTCAAAGTGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.21, G:0.14, T:0.43
Consensus pattern (14 bp):
ATGCATTATGCCTT
Found at i:35122252 original size:26 final size:26
Alignment explanation
Indices: 35122222--35122274 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
35122212 GTTGACTTAG
35122222 GCATAC-AGAGTTCATCCCCAGTCTAA
1 GCATACGA-AGTTCATCCCCAGTCTAA
* *
35122248 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
35122274 G
1 G
35122275 ATCGGATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:35123553 original size:158 final size:156
Alignment explanation
Indices: 35123080--35123574 Score: 413
Period size: 158 Copynumber: 3.1 Consensus size: 156
35123070 TAACCATATG
* ** * * ** *
35123080 GAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGACAGCAGGATCGGTAGCATGCA
1 GAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGAGGCAGCAGGATCGACAGCACGCA
* * * * *
35123145 AGGGGGACCGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTTCGATCGGTTGAGCGCCC-ATACA
66 GGGGGGACCGGGTCGATCCCGA-CTTGCGCATTCTGCCTCTTCGACCGGCTGAGCGCCCGA-ACG
* *
35123209 CCTATTTCATGGGTTGGCTTAGGCATAGG
129 CTTATTTCATGGGTTGGCTTAGGCATA-C
** * * * * ** * * *
35123238 GAGTTCATT-CCATGTCTAAGCCCCAG-GCAGACTGAGGGTTGTGGTAGTGGGACCGACAACACA
1 GAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACTGAGGGTTGAGGCAGCAGGATCGACAGCACG
* * * * * * * * *
35123301 CAGAGGGGGTCCGGGCCGAACCCCGGCTTGCGCATTATGCCTCTTCGGCCAGCTCAGCACCCGAA
64 CAG-GGGGGACCGGGTCG-ATCCCGACTTGCGCATTCTGCCTCTTCGACCGGCTGAGCGCCCGAA
* ** * * *
35123366 TGCTCGTTTCGTGGGTTGACCTAGGCATAC
127 CGCTTATTTCATGGGTTGGCTTAGGCATAC
* * *
35123396 AGAGTTCATTCCCAATCTAAGATCAGATCGGATTGAGGGTTGAGGCAGCAGGATCGACAGCACGC
1 -GAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGAGGCAGCAGGATCGACAGCACGC
* * * * * *
35123461 AGGGGGGACCGAGTCGGTCCCTGACTTGCGCATTCTACCTCTCCGACCGGCTGAGTGCCCGCACG
65 AGGGGGGACCGGGTCGATCCC-GACTTGCGCATTCTGCCTCTTCGACCGGCTGAGCGCCCGAACG
35123526 CTTATTTCATGGGTTGGCTTAGGCATAC
129 CTTATTTCATGGGTTGGCTTAGGCATAC
35123554 GAAGTTCATT-CCATGTCTAAG
1 G-AGTTCATTCCCA-GTCTAAG
35123575 CATACGGAGT
Statistics
Matches: 251, Mismatches: 75, Indels: 22
0.72 0.22 0.06
Matches are distributed among these distances:
157 10 0.04
158 123 0.49
159 110 0.44
160 8 0.03
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.23
Consensus pattern (156 bp):
GAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGAGGCAGCAGGATCGACAGCACGCA
GGGGGGACCGGGTCGATCCCGACTTGCGCATTCTGCCTCTTCGACCGGCTGAGCGCCCGAACGCT
TATTTCATGGGTTGGCTTAGGCATAC
Found at i:35123600 original size:26 final size:26
Alignment explanation
Indices: 35123548--35123600 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
35123538 GTTGGCTTAG
*
35123548 GCATACGAAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCATGTATAA
*
35123574 GCATACGGAGTTCATTCCCA-GTATAA
1 GCATACGAAGTTCATT-CCATGTATAA
35123600 G
1 G
35123601 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATGTATAA
Found at i:35123939 original size:26 final size:26
Alignment explanation
Indices: 35123903--35123981 Score: 113
Period size: 26 Copynumber: 3.0 Consensus size: 26
35123893 GTTGACCTAG
*
35123903 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
35123929 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* ** *
35123955 GAATACAAAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
35123981 G
1 G
35123982 ATCAGATCGG
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:35124448 original size:26 final size:26
Alignment explanation
Indices: 35124412--35124464 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
35124402 GTCGGCTCAG
*
35124412 GCATACGGAGTTAATT-CCATGTCTAA
1 GCATACAGAGTTAATTCCCA-GTCTAA
*
35124438 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTAATTCCCAGTCTAA
35124464 G
1 G
35124465 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTAATTCCCAGTCTAA
Found at i:35131013 original size:26 final size:26
Alignment explanation
Indices: 35130983--35131035 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
35130973 GTTGACTTAG
*
35130983 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
35131009 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
35131035 G
1 G
35131036 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:35131245 original size:159 final size:158
Alignment explanation
Indices: 35131009--35131682 Score: 568
Period size: 159 Copynumber: 4.2 Consensus size: 158
35130999 CCCAGTCTAA
* * *
35131009 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGACAGCAGGATCGGCA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCAGGATCGGCA
* ** *
35131074 ACATACAAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTGTCCGGTCGGCTCAGCGC
66 GCACGC-AGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGTCGGCTCAGCGC
* **
35131139 CCGCACGCTTGTTTCGTGGGTTAACTTAG
130 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * *
35131168 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGATTGAGGGTTGCGGTAGCAGGATCGACA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCAGGATCGGCA
* * * *
35131233 GCACGCAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCC-GACAGGC-CGAGCG
66 GCACGCAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGTC-GGCTC-AGCG
* * *
35131296 ACCGTACGCCCGTTTCGTGGGTTGGCTTAG
129 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * ** ** * ***
35131326 GCATAAGGAGTTCATT-CCATGTCTAAGCCCCAACCGGATCGAGGGTTGTGGCAATGGGA-CTGG
1 GCATACGAAGTTCATTCCCA-GTCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCAGGATC-GG
* * *
35131389 CAGCACGCAGAGGGGGATCGAGCCGATCCCCAGCTTGCGCATTATGCCTCTTCGGTCGGCTCAGC
64 CAGCACGCAG-GGGGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGTCGGCTCAGC
* *
35131454 GCCTGCACACTCGTTTCGTGGGTTGGCTTAG
128 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
** * ** * * *
35131485 GCATAC-AGAGTTCATTCCTTGTCTAAG-CCCCAGCCAGACCGAGGGTTGTGGCAGCAGGACTGG
1 GCATACGA-AGTTCATTCCCAGTCTAAGATCGGA-CCGGATCGAGGGTTGCGGCAGCAGGA-T--
* * * * * * *
35131548 CAGCGGGATCGACAACATGCAGAGGGGGACCAGGCTGATCCTCGACTTGTGCATTATGCCTCTCC
61 ---CGGCA--G-C-AC--GCAG-GGGGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCC
* * * * * * * *
35131613 AGCCGACTGAGTGCCCGTACGCTCATTTCGTGGGTTGACTTAG
116 GGTCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* *
35131656 GCATACGGAGTTCATCCCCAGTCTAAG
1 GCATACGAAGTTCATTCCCAGTCTAAG
35131683 CATACGGAGT
Statistics
Matches: 410, Mismatches: 81, Indels: 36
0.78 0.15 0.07
Matches are distributed among these distances:
157 7 0.02
158 128 0.31
159 170 0.41
160 4 0.01
165 3 0.01
166 1 0.00
167 1 0.00
168 1 0.00
169 2 0.00
171 93 0.23
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.22
Consensus pattern (158 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCAGGATCGGCA
GCACGCAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGTCGGCTCAGCGCC
CGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:35131685 original size:26 final size:26
Alignment explanation
Indices: 35131656--35131708 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
35131646 GTTGACTTAG
35131656 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
35131682 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
35131708 G
1 G
35131709 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:35131975 original size:159 final size:158
Alignment explanation
Indices: 35131682--35132184 Score: 455
Period size: 159 Copynumber: 3.2 Consensus size: 158
35131672 CCCAGTCTAA
* * * * * * * * *
35131682 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCGGACCAGACCGAGGGTTGCGGCAGTAGGATCAA
1 GCATACGGAGTTCATT-CCATGTCTAAGCACCAGATCGGACCGAGGGATGTGGCAGCAGGACCGA
* * * * * * * *
35131745 CAACATGTAGGGGGG-ACC-AGGCCGATCCCCGACTTGCGGATTCTGCCACTCCGGTCGGCTGAG
65 CAACACG-AGGGGGGCACCGA-GCCGATCTCTGGCTTGCGCATTATGCCTCTCCGG-CGGCTAAG
* *
35131808 CGCCCGCATGCCCGTTTCGTGGGTTGGCTTAG
127 CACCCGCATGCTCGTTTCGTGGGTTGGCTTAG
* * * * * *
35131840 GCATAGGGAGCTCATTCCATGTCTAAGCCCCAG-TCGGACCGAGGGATGTGGTAGCGGGACCGGC
1 GCATACGGAGTTCATTCCATGTCTAAGCACCAGATCGGACCGAGGGATGTGGCAGCAGGACCGAC
* * * **
35131904 AACACGCAGAGGGGG-ACCGAGCCGATCTCTGGCTTGCGTATTATGCCTCTCCAGTCGGGTCTGC
66 AACACG-AG-GGGGGCACCGAGCCGATCTCTGGCTTGCGCATTATGCCTCTCC-GGCGGCTAAGC
* *
35131968 ACCCGCATGCTCATTTCGTGGGTTGACTTAG
128 ACCCGCATGCTCGTTTCGTGGGTTGGCTTAG
* * ** * *
35131999 GCATACGGAGTTCATTCCCA-ATCTAAG-ATCAGATCGGATTGAGGGTTGTGGCAGCAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGCACCAGATCGGACCGAGGGATGTGGCAGCAGGACCGA
* * * * *
35132062 CAGCACGTGGGGGGCACTGGGCCGATCTCTGGCTTGCGCATTCTGCCTCTCCGGCGGCTAAGCAC
65 CAACACGAGGGGGGCACCGAGCCGATCTCTGGCTTGCGCATTATGCCTCTCCGGCGGCTAAGCAC
** * *
35132127 CCGCACACTCGTTTCGTGAGTTGGTTTAG
130 CCGCATGCTCGTTTCGTGGGTTGGCTTAG
35132156 GCATACGGAGTTCATTCCATGTCTAAGCA
1 GCATACGGAGTTCATTCCATGTCTAAGCA
35132185 TACGGAGTTC
Statistics
Matches: 275, Mismatches: 60, Indels: 20
0.77 0.17 0.06
Matches are distributed among these distances:
156 3 0.01
157 62 0.23
158 87 0.32
159 118 0.43
160 5 0.02
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.22
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGCACCAGATCGGACCGAGGGATGTGGCAGCAGGACCGAC
AACACGAGGGGGGCACCGAGCCGATCTCTGGCTTGCGCATTATGCCTCTCCGGCGGCTAAGCACC
CGCATGCTCGTTTCGTGGGTTGGCTTAG
Found at i:35132192 original size:26 final size:26
Alignment explanation
Indices: 35132156--35132208 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35132146 GTTGGTTTAG
*
35132156 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCACTCCTA-GTCTAA
35132182 GCATACGGAGTTCACTCCTAGTCTAA
1 GCATACGGAGTTCACTCCTAGTCTAA
35132208 G
1 G
35132209 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCACTCCTAGTCTAA
Found at i:35132474 original size:26 final size:26
Alignment explanation
Indices: 35132444--35132495 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
35132434 GTTGACTTAG
* *
35132444 GCATATAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* *
35132470 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
35132496 AATCGGTCTG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:35132993 original size:26 final size:26
Alignment explanation
Indices: 35132943--35132995 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35132933 GTTGGCTTAG
*
35132943 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
35132969 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
35132995 G
1 G
35132996 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:35133015 original size:787 final size:789
Alignment explanation
Indices: 35131466--35133015 Score: 2044
Period size: 786 Copynumber: 2.0 Consensus size: 789
35131456 CTGCACACTC
*
35131466 GTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCTTGTCTAAGCCCCAGCCAGACCGAGGGT
1 GTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGT
* *
35131531 TGTGGCAGCAGGACTGGCAGCGGGATCGACAACATGCAGAGGGGGACCAGGCTGATCCTCGACTT
66 TGTGGCAGCAGGACCGGCAGCGGGATCGACAACATGCAGAGGGGGACCAGGCTGATCCCCGACTT
* * * *
35131596 GTGCATTATGCCTCTCCAGCCGACTGAGTGCCCGTACGCTCATTTCGTGGGTTGACTTAGGCATA
131 GCGCATTATGCCTCTCCAGCCGACTGAGTCCCCGCACGCTCATTTCATGGGTTGACTTAGGCATA
* * *
35131661 CGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGG
196 CAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAAATCGGACCAGACCGAGG
* * * * * *
35131726 GTTGCGGCAGTAGGATCAACAACATGTAGGGGGGACCAGGCCGATCCCCGACTTGCGGATTCTGC
261 GTTGCAGCAGCAGGATCAACAACACGCAGGGGGGACCAGGCCGATCCCCGACTTACGCATTCTGC
* * * *
35131791 CACTCCGGTCGGCTGAGCGCCCGCATGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGCTCATT
326 CACGCCGGCCAGCTGAGCGCCCGCATACCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGCTCATT
* * * * *
35131856 CCATGTCTAAGCCCCAGTCGGACCGAGGGATGTGGTAGCGGGACCGGCAACACGCAGAGGGGGAC
391 CCATGTCTAAGCCCCAGCCAGACCGAGGGATGTGGTAACGGGACAGACAACACGCAGAGGGGGAC
* ** * * * ** *
35131921 CGAGCCGATCTCTGGCTTGCGTATTATGCCTCTCCAGTCGGGTCTGCACCCGCATGCTCATTTCG
456 CGAGCCGATCCCCAGCTTACGCATTATGCCTCTCCAGTCGGCTCAACACCCGCACGCTCATTTCG
*** * * * *
35131986 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGATCGGATTGAGGGTTGTGGC
521 TCAATTGACTTAGGCATACGAAGTTCATTCCCAATCTAAGATCAGATCGGATCGAGGGTTGCGAC
* ** * * *
35132051 AGCAGGATCGACAGCACGTGGGGGGCACTGGGCCGATCTCTGGCTTGCGCATTCTGCCTCTCCGG
586 AGCAGGATCGACAGCACGAGGGGGGCACCAGGCCGATCTCTGGCTTACGCATTCTACCTCCCCGG
*
35132116 CGGCTAAGCACCCGCACACTCGTTTCGTGAGTTGGTTTAGGCATACGGAGTTCATTCCATGTCTA
651 CGGCTAAGCACCCGCACACTCGTTTCGTGAGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
* *
35132181 AGCATACGGAGTTCACTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGCGATAGTAGGATCGAC
716 AGCATACGGAGTTCACTCCCAATCTAAGATCAGACCGGACCGAGGGTTGCGATAGTAGGATCGAC
35132246 AGCACGCTT
781 AGCACGCTT
*
35132255 GTTTCGTGGGTTGGCTTAGGCATAC-GCAGTTCATTCCATGTCTAAGCCCCAGTC-GAACCGAGG
1 GTTTCGTGGGTTGGCTTAGGCATACAG-AGTTCATTCCATGTCTAAGCCCCAGCCAG-ACCGAGG
* * * * * *
35132318 GTTGTGGTAGCAGGACCGGTAGCGGGATTGACAGCATGCAGAGGGGGACCGGGCTGATCCCCGGC
64 GTTGTGGCAGCAGGACCGGCAGCGGGATCGACAACATGCAGAGGGGGACCAGGCTGATCCCCGAC
* * *
35132383 TTGCGCGTTATGCCTCTCCGGCCGACTGAG-CCCCGCACGCTCGTTTCATGGGTTGACTTAGGCA
129 TTGCGCATTATGCCTCTCCAGCCGACTGAGTCCCCGCACGCTCATTTCATGGGTTGACTTAGGCA
* * * *
35132447 TATAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAAATCGG-TCTGAACTG
194 TACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAAATCGGACCAG-ACCG
* * * * *
35132511 AGGGTTGCAGTAGCAGGATCAATAGCACGCAGGGGGGATCGGGCCGATCCCC-AGCTTACGCATT
258 AGGGTTGCAGCAGCAGGATCAACAACACGCAGGGGGGACCAGGCCGATCCCCGA-CTTACGCATT
* * * * *
35132575 CTGCCTCGCTGGCCAGCTGAGCGCCCGCA-ACCCGTTTCTTGGGTTGGCTTAGGCATAGGTAGTT
322 CTGCCACGCCGGCCAGCTGAGCGCCCGCATACCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGCT
* * *
35132639 CATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGG-AATGGGACAGACAGCACGCAGAGGG
387 CATTCCATGTCTAAGCCCCAGCCAGACCGAGGGATGTGGTAACGGGACAGACAACACGCAGAGGG
* *
35132703 GGACCG-GACCGATCCCCAGCTTACGCATTATGCCTCTCC-GATCGGCTCAACGCCCGCACGCTT
452 GGACCGAG-CCGATCCCCAGCTTACGCATTATGCCTCTCCAG-TCGGCTCAACACCCGCACGCTC
* * ** * *
35132766 GTTTTGTCAATTGACTTAGGCATACGAAGTTCATTCGTAGTCTAAGATCGGATCGGATCGAGGGT
515 ATTTCGTCAATTGACTTAGGCATACGAAGTTCATTCCCAATCTAAGATCAGATCGGATCGAGGGT
* *
35132831 TGCGACAGCAGGATCGATAGCACGCAGGGGGG-ACCAGGCCGATC-CTCGGCTTACGCATTTTAC
580 TGCGACAGCAGGATCGACAGCACG-AGGGGGGCACCAGGCCGATCTCT-GGCTTACGCATTCTAC
* ** * * **
35132894 CTCCCCGGCTGGCTGAGTGCTCGTACGGTCGTTTCGTCG-GTTGGCTTAGGCATACGGAGTTCAT
643 CTCCCCGGC-GGCTAAGCACCCGCACACTCGTTTCGT-GAGTTGGCTTAGGCATACGGAGTTCAT
* * * *
35132958 TCCATGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGACTGGACTGAGGGTT
706 TCCATGTCTAAGCATACGGAGTTCACTCCCAATCTAAGATCAGACCGGACCGAGGGTT
35133016 ATGGCAGCAG
Statistics
Matches: 653, Mismatches: 98, Indels: 22
0.84 0.13 0.03
Matches are distributed among these distances:
785 4 0.01
786 174 0.27
787 172 0.26
788 162 0.25
789 141 0.22
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (789 bp):
GTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGT
TGTGGCAGCAGGACCGGCAGCGGGATCGACAACATGCAGAGGGGGACCAGGCTGATCCCCGACTT
GCGCATTATGCCTCTCCAGCCGACTGAGTCCCCGCACGCTCATTTCATGGGTTGACTTAGGCATA
CAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAAATCGGACCAGACCGAGG
GTTGCAGCAGCAGGATCAACAACACGCAGGGGGGACCAGGCCGATCCCCGACTTACGCATTCTGC
CACGCCGGCCAGCTGAGCGCCCGCATACCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGCTCATT
CCATGTCTAAGCCCCAGCCAGACCGAGGGATGTGGTAACGGGACAGACAACACGCAGAGGGGGAC
CGAGCCGATCCCCAGCTTACGCATTATGCCTCTCCAGTCGGCTCAACACCCGCACGCTCATTTCG
TCAATTGACTTAGGCATACGAAGTTCATTCCCAATCTAAGATCAGATCGGATCGAGGGTTGCGAC
AGCAGGATCGACAGCACGAGGGGGGCACCAGGCCGATCTCTGGCTTACGCATTCTACCTCCCCGG
CGGCTAAGCACCCGCACACTCGTTTCGTGAGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
AGCATACGGAGTTCACTCCCAATCTAAGATCAGACCGGACCGAGGGTTGCGATAGTAGGATCGAC
AGCACGCTT
Found at i:35133030 original size:787 final size:789
Alignment explanation
Indices: 35131466--35133036 Score: 2041
Period size: 787 Copynumber: 2.0 Consensus size: 789
35131456 CTGCACACTC
*
35131466 GTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCTTGTCTAAGCCCCAGCCAGACCGAGGGT
1 GTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGT
* *
35131531 TGTGGCAGCAGGACTGGCAGCGGGATCGACAACATGCAGAGGGGGACCAGGCTGATCCTCGACTT
66 TGTGGCAGCAGGACCGGCAGCGGGATCGACAACATGCAGAGGGGGACCAGGCTGATCCCCGACTT
* * * *
35131596 GTGCATTATGCCTCTCCAGCCGACTGAGTGCCCGTACGCTCATTTCGTGGGTTGACTTAGGCATA
131 GCGCATTATGCCTCTCCAGCCGACTGAGTCCCCGCACGCTCATTTCATGGGTTGACTTAGGCATA
* * *
35131661 CGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGG
196 CAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAAATCGGACCAGACCGAGG
* * * * * *
35131726 GTTGCGGCAGTAGGATCAACAACATGTAGGGGGGACCAGGCCGATCCCCGACTTGCGGATTCTGC
261 GTTGCAGCAGCAGGATCAACAACACGCAGGGGGGACCAGGCCGATCCCCGACTTACGCATTCTGC
* * * *
35131791 CACTCCGGTCGGCTGAGCGCCCGCATGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGCTCATT
326 CACGCCGGCCAGCTGAGCGCCCGCATACCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGCTCATT
* * * * *
35131856 CCATGTCTAAGCCCCAGTCGGACCGAGGGATGTGGTAGCGGGACCGGCAACACGCAGAGGGGGAC
391 CCATGTCTAAGCCCCAGCCAGACCGAGGGATGTGGTAACGGGACAGACAACACGCAGAGGGGGAC
* ** * * * ** *
35131921 CGAGCCGATCTCTGGCTTGCGTATTATGCCTCTCCAGTCGGGTCTGCACCCGCATGCTCATTTCG
456 CGAGCCGATCCCCAGCTTACGCATTATGCCTCTCCAGTCGGCTCAACACCCGCACGCTCATTTCG
*** * * * *
35131986 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGATCGGATTGAGGGTTGTGGC
521 TCAATTGACTTAGGCATACGAAGTTCATTCCCAATCTAAGATCAGATCGGATCGAGGGTTGCGAC
* ** * * *
35132051 AGCAGGATCGACAGCACGTGGGGGGCACTGGGCCGATCTCTGGCTTGCGCATTCTGCCTCTCCGG
586 AGCAGGATCGACAGCACGAGGGGGGCACCAGGCCGATCTCTGGCTTACGCATTCTACCTCCCCGG
*
35132116 CGGCTAAGCACCCGCACACTCGTTTCGTGAGTTGGTTTAGGCATACGGAGTTCATTCCATGTCTA
651 CGGCTAAGCACCCGCACACTCGTTTCGTGAGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
* * * * *
35132181 AGCATACGGAGTTCACTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGCGATAGTAGGATCGAC
716 AGCATACGGAGTTCACTCCCAATCTAAGATCAGACCGGACCGAGGGTTACGACAGCAGGATCGAC
35132246 AGCACGCTT
781 AGCACGCTT
*
35132255 GTTTCGTGGGTTGGCTTAGGCATAC-GCAGTTCATTCCATGTCTAAGCCCCAGTC-GAACCGAGG
1 GTTTCGTGGGTTGGCTTAGGCATACAG-AGTTCATTCCATGTCTAAGCCCCAGCCAG-ACCGAGG
* * * * * *
35132318 GTTGTGGTAGCAGGACCGGTAGCGGGATTGACAGCATGCAGAGGGGGACCGGGCTGATCCCCGGC
64 GTTGTGGCAGCAGGACCGGCAGCGGGATCGACAACATGCAGAGGGGGACCAGGCTGATCCCCGAC
* * *
35132383 TTGCGCGTTATGCCTCTCCGGCCGACTGAG-CCCCGCACGCTCGTTTCATGGGTTGACTTAGGCA
129 TTGCGCATTATGCCTCTCCAGCCGACTGAGTCCCCGCACGCTCATTTCATGGGTTGACTTAGGCA
* * * *
35132447 TATAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAAATCGG-TCTGAACTG
194 TACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAAATCGGACCAG-ACCG
* * * * *
35132511 AGGGTTGCAGTAGCAGGATCAATAGCACGCAGGGGGGATCGGGCCGATCCCC-AGCTTACGCATT
258 AGGGTTGCAGCAGCAGGATCAACAACACGCAGGGGGGACCAGGCCGATCCCCGA-CTTACGCATT
* * * * *
35132575 CTGCCTCGCTGGCCAGCTGAGCGCCCGCA-ACCCGTTTCTTGGGTTGGCTTAGGCATAGGTAGTT
322 CTGCCACGCCGGCCAGCTGAGCGCCCGCATACCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGCT
* * *
35132639 CATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGG-AATGGGACAGACAGCACGCAGAGGG
387 CATTCCATGTCTAAGCCCCAGCCAGACCGAGGGATGTGGTAACGGGACAGACAACACGCAGAGGG
* *
35132703 GGACCG-GACCGATCCCCAGCTTACGCATTATGCCTCTCC-GATCGGCTCAACGCCCGCACGCTT
452 GGACCGAG-CCGATCCCCAGCTTACGCATTATGCCTCTCCAG-TCGGCTCAACACCCGCACGCTC
* * ** * *
35132766 GTTTTGTCAATTGACTTAGGCATACGAAGTTCATTCGTAGTCTAAGATCGGATCGGATCGAGGGT
515 ATTTCGTCAATTGACTTAGGCATACGAAGTTCATTCCCAATCTAAGATCAGATCGGATCGAGGGT
* *
35132831 TGCGACAGCAGGATCGATAGCACGCAGGGGGG-ACCAGGCCGATC-CTCGGCTTACGCATTTTAC
580 TGCGACAGCAGGATCGACAGCACG-AGGGGGGCACCAGGCCGATCTCT-GGCTTACGCATTCTAC
* ** * * **
35132894 CTCCCCGGCTGGCTGAGTGCTCGTACGGTCGTTTCGTCG-GTTGGCTTAGGCATACGGAGTTCAT
643 CTCCCCGGC-GGCTAAGCACCCGCACACTCGTTTCGT-GAGTTGGCTTAGGCATACGGAGTTCAT
* * * * * *
35132958 TCCATGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGACTGGACTGAGGGTTATGGCAG
706 TCCATGTCTAAGCATACGGAGTTCACTCCCAATCTAAGATCAGACCGGACCGAGGGTTACGACAG
35133023 CAGGATCGACAGCA
771 CAGGATCGACAGCA
35133037 TGCTGGGGGG
Statistics
Matches: 669, Mismatches: 103, Indels: 22
0.84 0.13 0.03
Matches are distributed among these distances:
785 4 0.01
786 174 0.26
787 188 0.28
788 162 0.24
789 141 0.21
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (789 bp):
GTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGT
TGTGGCAGCAGGACCGGCAGCGGGATCGACAACATGCAGAGGGGGACCAGGCTGATCCCCGACTT
GCGCATTATGCCTCTCCAGCCGACTGAGTCCCCGCACGCTCATTTCATGGGTTGACTTAGGCATA
CAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAAATCGGACCAGACCGAGG
GTTGCAGCAGCAGGATCAACAACACGCAGGGGGGACCAGGCCGATCCCCGACTTACGCATTCTGC
CACGCCGGCCAGCTGAGCGCCCGCATACCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGCTCATT
CCATGTCTAAGCCCCAGCCAGACCGAGGGATGTGGTAACGGGACAGACAACACGCAGAGGGGGAC
CGAGCCGATCCCCAGCTTACGCATTATGCCTCTCCAGTCGGCTCAACACCCGCACGCTCATTTCG
TCAATTGACTTAGGCATACGAAGTTCATTCCCAATCTAAGATCAGATCGGATCGAGGGTTGCGAC
AGCAGGATCGACAGCACGAGGGGGGCACCAGGCCGATCTCTGGCTTACGCATTCTACCTCCCCGG
CGGCTAAGCACCCGCACACTCGTTTCGTGAGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
AGCATACGGAGTTCACTCCCAATCTAAGATCAGACCGGACCGAGGGTTACGACAGCAGGATCGAC
AGCACGCTT
Found at i:35133128 original size:184 final size:183
Alignment explanation
Indices: 35132785--35133338 Score: 621
Period size: 184 Copynumber: 3.0 Consensus size: 183
35132775 ATTGACTTAG
* ** * *
35132785 GCATACGAAGTTCATTCGTAGTCTAAGATCGGATCGGATCGAGGGTTGCGACAGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGAT-GGATCGAGGGTTGCGGCAGCAGGATCGACA
* * * * * * *
35132850 GCACGCAGGGGGGACCAGGCCGAT-CCTCGGCTTACGCATTTTACCTCCCCGGCTGGCTGAGTGC
65 GCATGCAGGGGGGACCAGGCCGATCCCT-GACTTGCGCATTTTACCTCTCCGACCGGCTGAGCGC
* * *
35132914 TCGTACGGTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
129 CCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* **
35132969 GCATACGGAGTTCATTCCCAATCTAAGATCGGACTGGA-CTGAGGGTTATGGCAGCAGGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGA-TGGATC-GAGGGTTGCGGCAGCAGGATCGAC
* * * * *
35133033 AGCATGCTGGGGGGACCTGGCCGATCCCTGACTTGCTCATTTTACCTCTCCGATCGACTGAGCGC
64 AGCATGCAGGGGGGACCAGGCCGATCCCTGACTTGCGCATTTTACCTCTCCGACCGGCTGAGCGC
* * * *
35133098 CCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAA
129 CCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAA
* * * *
35133153 GCATACGGAGTTCATTCCCAGTCTAAGATCAGAATGGATCAAGGGTTGCGGCAGCAGGATTGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATC-GGATGGATCGAGGGTTGCGGCAGCAGGATCGACA
* * * * * * * *
35133218 GCATGCAGGTGGGATCGGGTCGATCCC-CAGCTTGCGAATTCTGCCTCTCCGACCGGCTGAGCGC
65 GCATGCAGGGGGGACCAGGCCGATCCCTGA-CTTGCGCATTTTACCTCTCCGACCGGCTGAGCGC
* * * * *
35133282 CCGTACACCCGTTTCATGGGTTGGCTTAGGCATAGGGAGCTCATTCCATGTCTAA
129 CCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
35133337 GC
1 GC
35133339 CCCAATCGAA
Statistics
Matches: 307, Mismatches: 55, Indels: 16
0.81 0.15 0.04
Matches are distributed among these distances:
183 5 0.02
184 292 0.95
185 10 0.03
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.24
Consensus pattern (183 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGATGGATCGAGGGTTGCGGCAGCAGGATCGACAG
CATGCAGGGGGGACCAGGCCGATCCCTGACTTGCGCATTTTACCTCTCCGACCGGCTGAGCGCCC
GTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
Found at i:35133163 original size:26 final size:26
Alignment explanation
Indices: 35133127--35133179 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
35133117 GTTGACTTAG
35133127 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
35133153 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
35133179 G
1 G
35133180 ATCAGAATGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:35135071 original size:26 final size:26
Alignment explanation
Indices: 35135042--35135091 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
35135032 CGGTCTGAGC
*
35135042 TTAGAC-TAGGAATGAACTCTGTATTT
1 TTAGACAT-GGAATGAACTCCGTATTT
35135068 TTAGACATGGAATGAACTCCGTAT
1 TTAGACATGGAATGAACTCCGTAT
35135092 GCCTAAGCCA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.32, C:0.14, G:0.20, T:0.34
Consensus pattern (26 bp):
TTAGACATGGAATGAACTCCGTATTT
Found at i:35135431 original size:159 final size:158
Alignment explanation
Indices: 35135226--35136148 Score: 638
Period size: 159 Copynumber: 5.8 Consensus size: 158
35135216 CCGGTCCGAT
* * * *
35135226 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAA-CC-TGCAAAACGAGCGTGCGGGTGCTGA
1 CTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCATG--AAACGAGCGTGCGGGCGCTCA
* * * * ** * *
35135289 GCTGGCC-AGAGAGGCATAATGTGTAAGCCGGGGATAAGTTCGATCCCTTTCTGCGTGCTGCCAG
64 GCCGGCCGA-AGAGGCAGAATGCGCAAGCCGGGGATAAGCCCGATCCC-CTCTGCGTGCTACCAG
35135353 TCCCGCTGCCACAACCCTCGATCTGGCTGGGG
127 TCCCGCTGCCACAACCCTCGATCTGGCTGGGG
* * * *
35135385 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACG-GACGAGCAGCCGCCCA
1 CTTAGAC-TGGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAG-CGTGCGGGCGCTCA
** * * * * * *
35135448 GCCGATCGAAGAGGGAGAATGCACAAGCCGGGGATCAGCCCGATCCCCCCTGCATGCTACCAATC
64 GCCGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATAAGCCCGATCCCCTCTGCGTGCTACCAGTC
** * * * **
35135513 CTACTGTCGA-AACCCTCGTAT-AGTCT-GAT
129 CCGCTG-CCACAACCCTCG-ATCTGGCTGGGG
* * * * * *
35135542 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGC-GGCACTGAGC
1 CTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * *
35135606 CGGCCGAAGAGGCATAATGCGCAAGCCAGGGATCGAA-CCCGATCCCCCTCCGCGTGCTACCGGT
66 CGGCCGAAGAGGCAGAATGCGCAAGCCGGGGAT--AAGCCCGAT-CCCCTCTGCGTGCTACCAGT
35135670 CCCGCTGCCACAACCCTCGATCTGGCTGGGG
128 CCCGCTGCCACAACCCTCGATCTGGCTGGGG
*
35135701 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * ** * *
35135765 CCGGCCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGATCCCC-CTTACGTGCTATC-GAT
65 CCGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATAAGCCCGATCCCCTC-TGCGTGCTACCAG-T
** * * * * * * **
35135828 CTTGCTACCGCAACCCTCGGTCCGGTTCGAT
128 CCCGCTGCCACAACCCTCGATCTGGCTGGGG
* * * * * * *
35135859 CTTAGACTGGGAATGAAC-CCGTATGCATAAGTCAACCCACGAAATGAGTGTGCGGGCGCTAAGC
1 CTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
35135923 CGGCCGAAGAGGTATAATGCGCAAGCCGAGGAT-CGACCCGGTCCCCTCTGCCTGTTGTCGATCC
66 CGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATAAG-CCCGATCCCCTCTG-C-G-TG-CTA-CC
* * * * * *
35135987 TGCTGCTGGTCCTACTGTCGCAACCCTCGATCCGGTCT-GAG
125 AG-T-C----CC-GCTGCCACAACCCTCGATCTGG-CTGGGG
* * ** * ** * *
35136028 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATGTAGGTGCTTAGC
1 CTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* ** * *
35136093 CGGCCGGAGAGGCAGAATGCATAAGCCGGAGATCAGCCCGATACCGCC-CTGCGTGC
66 CGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATAAGCCCGAT-CC-CCTCTGCGTGC
35136149 AGTCGATCCT
Statistics
Matches: 592, Mismatches: 132, Indels: 72
0.74 0.17 0.09
Matches are distributed among these distances:
156 35 0.06
157 135 0.23
158 114 0.19
159 138 0.23
160 44 0.07
161 4 0.01
162 1 0.00
163 2 0.00
164 1 0.00
167 1 0.00
168 2 0.00
169 38 0.06
170 69 0.12
171 6 0.01
172 2 0.00
ACGTcount: A:0.24, C:0.31, G:0.28, T:0.18
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
CGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATAAGCCCGATCCCCTCTGCGTGCTACCAGTCCC
GCTGCCACAACCCTCGATCTGGCTGGGG
Found at i:35135579 original size:157 final size:157
Alignment explanation
Indices: 35135385--35135992 Score: 473
Period size: 157 Copynumber: 3.9 Consensus size: 157
35135375 CTGGCTGGGG
* *
35135385 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGACGAGCAGCCGCCCAGC
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGACGTGCAGCCGCCCAGC
** * * * *
35135450 CGATCGAAGAGGGAGAATGCACAAGCCGGGGATCAGCCCGATCCCCCCTGCATGCTACCAATCCT
66 CGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGATCCCCCCTGCGTGCTACCGATCCT
*
35135515 ACTGTCGAAACCCTCGTATAGTCT-GAT
131 GCTG-CGAAACCCTCGTATAGTCTCGAT
* * * * *
35135542 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC-GA-GTG-TGCGGCACTG
1 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGACGTGCAGCCGC-C-C
* * * *
35135603 AGCCGGCCGAAGAGGCATAATGCGCAAGCCAGGGATCGAACCCGATCCCCCTCCGCGTGCTACCG
63 AGCCGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATC-AGCCCGATCCCCC-CTGCGTGCTACCG
* * * * * * **
35135668 GTCCCGCTGCCACAACCCTCG-ATCTGGCTGGGG
126 ATCCTGCTGCGA-AACCCTCGTAT-AGTCTCGAT
* * * * *
35135701 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGACGTGCAGCCGCCCAGC
* * * * * * *
35135766 CGGCCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGATCCCCCTTACGTGCTATCGATCTT
66 CGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGATCCCCCCTGCGTGCTACCGATCCT
* * ***
35135831 GCTACCGCAACCCTCGGTCCGGT-TCGAT
131 GCT-GCGAAACCCTC-GTATAGTCTCGAT
* * * * * * * **
35135859 CTTAGAC-TGGGAATGAAC-CCGTATGCATAAGTCAACCCACGAAA-TGAGTGTGCGGGCGCTAA
1 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGA-CGTGCAGCCGCCCA
* * * * * * * **
35135921 GCCGGCCGAAGAGGTATAATGCGCAAGCCGAGGATC-GACCCGGTCCCCTCTGCCTGTTGTCGAT
64 GCCGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCAG-CCCGATCCCCCCTGCGTGCTACCGAT
35135985 CCTGCTGC
128 CCTGCTGC
35135993 TGGTCCTACT
Statistics
Matches: 354, Mismatches: 79, Indels: 37
0.75 0.17 0.08
Matches are distributed among these distances:
154 4 0.01
155 3 0.01
156 37 0.10
157 147 0.42
158 66 0.19
159 56 0.16
160 35 0.10
161 3 0.01
162 3 0.01
ACGTcount: A:0.24, C:0.32, G:0.27, T:0.17
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGACGTGCAGCCGCCCAGC
CGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGATCCCCCCTGCGTGCTACCGATCCT
GCTGCGAAACCCTCGTATAGTCTCGAT
Found at i:35135651 original size:316 final size:317
Alignment explanation
Indices: 35135206--35135968 Score: 966
Period size: 316 Copynumber: 2.4 Consensus size: 317
35135196 CTGTTGCCAC
* * * * ** *
35135206 AACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCTGCAAAA
1 AACCCTCGGTACAGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
* * * * * **
35135271 CGAGCGTGCGGGTGCTGAGCTGGCC-AGAGAGGCATAATGTGTAAGCCGGGGAT--AAGTTCGAT
66 CGAGTGTGCGGGCGCTGAGCCGGCCGA-AGAGGCATAATGCGCAAGCC-GGGATCGAA-CCCGAT
** * *
35135333 CCCTTTCTGCGTGCTGCCAGTCCCGCTGCCACAACCCTCGATCTGGCTGGGGCTTAGACATGGAA
128 CCCCCTCCGCGTGCTACCAGTCCCGCTGCCACAACCCTCGATCTGGCTGGGGCTTAGACATGGAA
* *
35135398 TGAACTCCCTATGCCTAAGCCAACCCATGAAACGGACGAGCAGCCGCCCAGCCGATCGAAGAGGG
193 TGAACTCCCTATGCCTAAGCCAACCCATGAAACGGACGAGCAGCCGCCCAGCCGACCGAAGAGGC
* **
35135463 AGAATGCACAAGCCGGGGATCAGCCCGATCCCCCCTGCATGCTACCAATCCTACTGTCGA
258 AGAATGCACAAGCCGGGGATCAGCCCGATCCCCCCTACATGCTACCAATCCTACTACCGA
*
35135523 AACCCTC-GTATAG-TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
1 AACCCTCGGTACAGTTC-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
*
35135586 ACGAGTGTGC-GGCACTGAGCCGGCCGAAGAGGCATAATGCGCAAGCCAGGGATCGAACCCGATC
65 ACGAGTGTGCGGGCGCTGAGCCGGCCGAAGAGGCATAATGCGCAAGCC-GGGATCGAACCCGATC
*
35135650 CCCCTCCGCGTGCTACCGGTCCCGCTGCCACAACCCTCGATCTGGCTGGGGCTTAGACATGGAAT
129 CCCCTCCGCGTGCTACCAGTCCCGCTGCCACAACCCTCGATCTGGCTGGGGCTTAGACATGGAAT
* * * * * * *
35135715 GAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAGCCGGCCGGAGAGGCA
194 GAACTCCCTATGCCTAAGCCAACCCATGAAACGGACGAGCAGCCGCCCAGCCGACCGAAGAGGCA
* * * * * * * * * *
35135780 GAATGCGCAAGTCGGGGATCGGCCCGATCCCCCTTACGTGCTATCGATCTTGCTACCGC
259 GAATGCACAAGCCGGGGATCAGCCCGATCCCCCCTACATGCTACCAATCCTACTACCGA
* * *
35135839 AACCCTCGGTCCGGTTCGATCTTAGACTGGGAATGAAC-CCGTATGCATAAGTCAACCCACGAAA
1 AACCCTCGGTACAGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
* * * *
35135903 TGAGTGTGCGGGCGCTAAGCCGGCCGAAGAGGTATAATGCGCAAGCCGAGGATCG-ACCCGGTCC
66 CGAGTGTGCGGGCGCTGAGCCGGCCGAAGAGGCATAATGCGCAAGCCG-GGATCGAACCCGATCC
35135967 CC
130 CC
35135969 TCTGCCTGTT
Statistics
Matches: 385, Mismatches: 53, Indels: 17
0.85 0.12 0.04
Matches are distributed among these distances:
315 36 0.09
316 274 0.71
317 73 0.19
318 2 0.01
ACGTcount: A:0.24, C:0.31, G:0.28, T:0.18
Consensus pattern (317 bp):
AACCCTCGGTACAGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
CGAGTGTGCGGGCGCTGAGCCGGCCGAAGAGGCATAATGCGCAAGCCGGGATCGAACCCGATCCC
CCTCCGCGTGCTACCAGTCCCGCTGCCACAACCCTCGATCTGGCTGGGGCTTAGACATGGAATGA
ACTCCCTATGCCTAAGCCAACCCATGAAACGGACGAGCAGCCGCCCAGCCGACCGAAGAGGCAGA
ATGCACAAGCCGGGGATCAGCCCGATCCCCCCTACATGCTACCAATCCTACTACCGA
Found at i:35136134 original size:327 final size:315
Alignment explanation
Indices: 35135223--35136134 Score: 935
Period size: 316 Copynumber: 2.9 Consensus size: 315
35135213 GGTCCGGTCC
* * ** * * ** *
35135223 GATCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCTGCAAAACGAGCGTGCGGGTGCTG
1 GATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGTGTGC-GGCACTA
* * * * ** ** * *
35135288 AGCTGGCC-AGAGAGGCATAATGTGTAAGCCGGGGAT--AAGTTCGATCCCTTTCTGCGTGCTGC
65 AGCCGGCCGA-AGAGGCATAATGCGCAAGCCAGGGATCGAA-CCCGATCCCCCTCCGCGTGCTAC
* *
35135350 CAGTCCCGCTGCCACAACCCTCGATCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTA
128 CGGTCCCACTGCCACAACCCTCGATCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTA
* * ** * *
35135415 AGCCAACCCATGAAACGGACGA-GCAGCCGCCCAGCCGATCGAAGAGGGAGAATGCACAAGCCGG
193 AGCCAACCCATGAAACGG-C-ATGCAGGCGCTCAGCCGGCCGGAGAGGCAGAATGCACAAGCCGG
* ** *
35135479 GGATCAGCCCGATCCCCCCTGCATGCTACCAATCCTACTGTCGAAACCCTCGTATAGTCT
256 GGATCAGCCCGATCCCCCCTACATGCTACCAATCCTACTACCGAAACCCTCGTACAGTCT
* *
35135539 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGCACTGA
1 GATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGTGTGCGGCACTAA
35135604 GCCGGCCGAAGAGGCATAATGCGCAAGCCAGGGATCGAACCCGATCCCCCTCCGCGTGCTACCGG
66 GCCGGCCGAAGAGGCATAATGCGCAAGCCAGGGATCGAACCCGATCCCCCTCCGCGTGCTACCGG
*
35135669 TCCCGCTGCCACAACCCTCGATCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGC
131 TCCCACTGCCACAACCCTCGATCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGC
* * * *
35135734 CAACCCATGAAACGGGCGTGCGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCGCAAGTCGGGGAT
196 CAACCCATGAAAC-GGCATGCAGGCGCTCAGCCGGCCGGAGAGGCAGAATGCACAAGCCGGGGAT
* * * * * * * * * *
35135799 CGGCCCGATCCCCCTTACGTGCTATCGATCTTGCTACCGCAACCCTCGGTCCGGT-T
260 CAGCCCGATCCCCCCTACATGCTACCAATCCTACTACCGAAACCCTC-GTACAGTCT
* *
35135855 CGATCTTAGACTGGGAATGAAC-CCGTATGCATAAGTCAACCCACGAAATGAGTGTGCGGGCGCT
1 -GATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGTGTGC-GGCACT
* *
35135919 AAGCCGGCCGAAGAGGTATAATGCGCAAGCC-GAGGATCG-ACCCGGTCCCCTCTGCCTGTTGTC
64 AAGCCGGCCGAAGAGGCATAATGCGCAAGCCAG-GGATCGAACCCGATCCCC-CT-CC----G-C
* * * * * * *
35135982 GATCCTGCTGCTGGTCCTACTGTCGCAACCCTCGATCCGGTCT-GAGCTTAGAC-TAGGAATGAA
121 G----TGCTACCGGTCCCACTGCCACAACCCTCGATCTGG-CTGGGGCTTAGACAT-GGAATGAA
* ** * * *
35136045 CTCCGTATGCCTAAGCCAACCCACAAAACGAGCATGTAGGTGCTTAGCCGGCCGGAGAGGCAGAA
180 CTCCCTATGCCTAAGCCAACCCATGAAACG-GCATGCAGGCGCTCAGCCGGCCGGAGAGGCAGAA
* *
35136110 TGCATAAGCCGGAGATCAGCCCGAT
244 TGCACAAGCCGGGGATCAGCCCGAT
35136135 ACCGCCCTGC
Statistics
Matches: 504, Mismatches: 69, Indels: 35
0.83 0.11 0.06
Matches are distributed among these distances:
315 35 0.07
316 269 0.53
317 71 0.14
318 2 0.00
322 1 0.00
323 2 0.00
326 2 0.00
327 120 0.24
328 2 0.00
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.18
Consensus pattern (315 bp):
GATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGTGTGCGGCACTAA
GCCGGCCGAAGAGGCATAATGCGCAAGCCAGGGATCGAACCCGATCCCCCTCCGCGTGCTACCGG
TCCCACTGCCACAACCCTCGATCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGC
CAACCCATGAAACGGCATGCAGGCGCTCAGCCGGCCGGAGAGGCAGAATGCACAAGCCGGGGATC
AGCCCGATCCCCCCTACATGCTACCAATCCTACTACCGAAACCCTCGTACAGTCT
Found at i:35138353 original size:26 final size:26
Alignment explanation
Indices: 35138315--35138367 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35138305 GGCTTAAAAT
35138315 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
35138341 CTTAGACAT-GGAATGCACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
35138367 C
1 C
35138368 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35138685 original size:20 final size:20
Alignment explanation
Indices: 35138651--35138720 Score: 97
Period size: 20 Copynumber: 3.5 Consensus size: 20
35138641 CCTCGATCCG
35138651 GCTGCCGAT-CCCCCTACGT
1 GCTGCCGATCCCCCCTACGT
*
35138670 GCTGTCGATCCCCCCTACGT
1 GCTGCCGATCCCCCCTACGT
* *
35138690 GCTACCGATCCCTCCTACGT
1 GCTGCCGATCCCCCCTACGT
*
35138710 GCTACCGATCC
1 GCTGCCGATCC
35138721 TGCTGCCGTA
Statistics
Matches: 46, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
19 8 0.17
20 38 0.83
ACGTcount: A:0.13, C:0.46, G:0.19, T:0.23
Consensus pattern (20 bp):
GCTGCCGATCCCCCCTACGT
Found at i:35139147 original size:26 final size:26
Alignment explanation
Indices: 35139095--35139147 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
35139085 CCGGTTCAAT
* *
35139095 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGAATG
* *
35139121 CTTAGACTGGGGATAAACTCTGAATG
1 CTTAGACTGGGAATAAACTCCGAATG
35139147 C
1 C
35139148 CTAAGTTAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGAATG
Found at i:35140804 original size:159 final size:157
Alignment explanation
Indices: 35140550--35141052 Score: 443
Period size: 159 Copynumber: 3.2 Consensus size: 157
35140540 ACTCCATATG
*
35140550 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACT-A-GCGTACAGGCGCTCA
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAA-TGAGGCG--CAGGCGCTCA
* *
35140613 ACCGACCGGAGAGGCAGAATACGCAAGCTGGGGATCGACCGAGTCCCCCCCTGCGTGCTGTCGAT
63 ACCGACCGGAGAGGCAGAATGCGCAAGTTGGGGATCGACCGAGT-CCCCCCTGCGTGCTG-CGAT
* *
35140678 CCTGCTGTCACAACCCTTGGTCTGGTCT-GAT
126 CCTGCTGACACAACCCTCGGTCTGGTCTCGAT
* * * * *
35140709 CTTAGAC-TAGGAATGAACTCCGTATGCCTAAGTCAACCCATTAAATGAGTGCGCTGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAG-GCGCAGGCGCTCAA
* * * * * * * *
35140773 CCGGCCGGAGAGGCATAATGCACAAGTTGGGGATTGGCTCGA-TCCCCCTTGACGTGCTACCGGT
64 CCGACCGGAGAGGCAGAATGCGCAAGTTGGGGATCGAC-CGAGTCCCCCCTG-CGTGCT-GCGAT
* * * **
35140837 CCTGCTGCCACAACCCTCGGTCCGG-CTGGGG
126 CCTGCTGACACAACCCTCGGTCTGGTCTCGAT
* * * *
35140868 CATAGACATGGAATGAACTCCCTAAGCCTAAGCCAACCCATGAAATG-GGCATGCGGGCGCTCAA
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGGC--GCAGGCGCTCAA
** * * * *
35140932 CCGTTCGGACAAGCAGAATGCGCAAGTTGGGGATCGGCCCG-GTCCCCCCTACGTGCTGCTGATC
64 CCGACCGGAGAGGCAGAATGCGCAAGTTGGGGATC-GACCGAGTCCCCCCTGCGTGCTGC-GATC
* * * *
35140996 CTACT-ACTGCAACCCTCGATATGGT-TCGAT
127 CTGCTGAC-ACAACCCTCGGTCTGGTCTCGAT
*
35141026 CTTAGAC-TGGGAATGAACTCTGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
35141053 TTAGACTGGG
Statistics
Matches: 273, Mismatches: 54, Indels: 35
0.75 0.15 0.10
Matches are distributed among these distances:
157 5 0.02
158 60 0.22
159 199 0.73
160 6 0.02
161 3 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGGCGCAGGCGCTCAACC
GACCGGAGAGGCAGAATGCGCAAGTTGGGGATCGACCGAGTCCCCCCTGCGTGCTGCGATCCTGC
TGACACAACCCTCGGTCTGGTCTCGAT
Found at i:35141062 original size:26 final size:26
Alignment explanation
Indices: 35141026--35141078 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
35141016 ATGGTTCGAT
* *
35141026 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
*
35141052 CTTAGACTGGGGATGAAATCCGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
35141078 C
1 C
35141079 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCGTATG
Found at i:35141702 original size:26 final size:26
Alignment explanation
Indices: 35141664--35141719 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
35141654 CCGATTCGAT
35141664 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
35141690 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
35141716 CTTA
1 CTTA
35141720 AGCCAACCAA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 27 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:35143062 original size:158 final size:157
Alignment explanation
Indices: 35142770--35143585 Score: 601
Period size: 158 Copynumber: 5.2 Consensus size: 157
35142760 ACTTCGTATG
* * * * * *
35142770 CTTAGACATGGAATGAACTCTGCATGCTTAAGCCAACCCATGAAACAAGCGTGCGGGCACTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * ** *
35142835 CGGTCGGAGAGGCAGAATGCACAAGCCAGGGATCAACCCGGTCCCCCT-TACGTGCTGTCAATCC
66 CGATCGAAGAGGCAGAATGCGCAAG-CTGGGATCGGCCC-GTCCCCCTCTACGTGCTGTCGATCC
* *
35142899 TGCTACCGCAACCCTTGGTTTGGTCTGAT
129 TGCTACCACAACCCTTGGTTCGGTCTGAT
* * *
35142928 CTTAGACGA-GGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTGCGGGCGCTGAG
1 CTTAGAC-ATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * * *
35142992 CTGACCGAAGAGGTATAATGGGCAAGCTGGGATCGGCCCAGTCCCCCTCTACGTGATATCGGTCC
65 CCGATCGAAGAGGCAGAATGCGCAAGCTGGGATCGGCCC-GTCCCCCTCTACGTGCTGTCGATCC
* * * * ** **
35143057 CGCTACTACAACCCTTAGTCCGGTAGGGG
129 TGCTACCACAACCCTTGGTTCGGTCTGAT
* * * * * * *
35143086 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTACGAGCGCTCATT
1 CTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA-G
* * ** **
35143151 CTGCCTC--AGAGGCAGAATGTACAAGCTGGGGATCGGCCCGATCCCCC-CTGTGTGCTGTCGAT
65 CCG-ATCGAAGAGGCAGAATGCGCAAGCT-GGGATCGGCCCG-TCCCCCTCTACGTGCTGTCGAT
* * * * * * *
35143213 CTTGCTACCGCAACCCTCGATCCAGTCCGAT
127 CCTGCTACCACAACCCTTGGTTCGGTCTGAT
* * * * ** *
35143244 CTTAGAC-TGGGAATGAATTCTGTATGCATAAGTCAACCCACGAAATGAGCGTATGGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * ** * * * *
35143308 CC-AGTCGAAGAGGCATAATGCGTAAGCCAGGATCGGTTCAGT-CCCCTCTACGTGCTGTTGGTC
65 CCGA-TCGAAGAGGCAGAATGCGCAAGCTGGGATCGG-CCCGTCCCCCTCTACGTGCTGTCGATC
* * * * **
35143371 CCGCTGCCACAACCCTCGGTTC-GACTGGGG
128 CTGCTACCACAACCCTTGGTTCGGTCT-GAT
* * * * * *
35143401 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCTACGAAACGGGCATGCGGGCGCTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * *
35143466 CGATCGAAGAGGTAGAATGTGTAAGCCGGGGATCGACCCGATCCCCC-CTGCGTGCTATCGATCC
66 CGATCGAAGAGGCAGAATGCGCAAG-CTGGGATCGGCCCG-TCCCCCTCTACGTGCTGTCGATCC
* *
35143530 TGCTGCCAAAACCCTTGGTTCGGTCTGAT
129 TGCTACCACAACCCTTGGTTCGGTCTGAT
*
35143559 CTTAGAC-TGGGAATGAACTTCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
35143586 TTAGACTGGA
Statistics
Matches: 502, Mismatches: 135, Indels: 42
0.74 0.20 0.06
Matches are distributed among these distances:
156 8 0.02
157 131 0.26
158 334 0.67
159 28 0.06
160 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGATCGAAGAGGCAGAATGCGCAAGCTGGGATCGGCCCGTCCCCCTCTACGTGCTGTCGATCCTG
CTACCACAACCCTTGGTTCGGTCTGAT
Found at i:35143499 original size:315 final size:314
Alignment explanation
Indices: 35142769--35143585 Score: 926
Period size: 316 Copynumber: 2.6 Consensus size: 314
35142759 AACTTCGTAT
* * * ** *
35142769 GCTTAGACATGGAATGAACTCTGC-ATGCTTAAGCCAACCCATGAAACAAGCGTGCGGGCACTCA
1 GCTTAGACATGGAATGAACTC-CCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCA
* * * * * * * * *
35142833 GCCGGTCGGAGAGGCAGAATGCACAAGCCAGGGATCAACCCGGTCCCCCTTACGTGCTGTCAATC
65 ACCGATC-GAGAGGCAGAATGTACAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTGTCGATC
* *
35142898 CTGCTACCGCAACCCTTGGTTTGGTCTGATCTTAGAC-GAGGAATGAACTCCGTATGCATAAGTC
129 CTGCTACCGCAACCCTTGGTTCGGTCTGATCTTAGACTG-GGAATGAA-TTCGTATGCATAAGTC
* * * * * **
35142962 AACCCATGAAACGAGCGTGCGGGCGCTGAGCTGACCGAAGAGGTATAATGGGCAAGCTGGGATCG
192 AACCCACGAAACGAGCGTACGGGCGCTGAGCAGACCGAAGAGGCATAATGCGCAAGCCAGGATCG
* * *
35143027 GCCCAGTCCCCCTCTACGTGATATCGGTCCCGCTACTACAACCCTTAGTCCGGTAGGG
257 GCCCAGTCCCCCTCTACGTGATATCGGTCCCGCTACCACAACCCTCAGTCCGCTAGGG
* * *
35143085 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTACGAGCGCTCAT
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCA-
* * * * * *
35143150 TCTGCCTC-AGAGGCAGAATGTACAAGCTGGGGATCGGCCCGATCCCCCCTGTGTGCTGTCGATC
65 ACCG-ATCGAGAGGCAGAATGTACAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTGTCGATC
* * * * * *
35143214 TTGCTACCGCAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAATTCTGTATGCATAAGTCA
129 CTGCTACCGCAACCCTTGGTTCGGTCTGATCTTAGACTGGGAATGAATTC-GTATGCATAAGTCA
* * * *
35143279 ACCCACGAAATGAGCGTATGGGCGCTGAGCCAG-TCGAAGAGGCATAATGCGTAAGCCAGGATCG
193 ACCCACGAAACGAGCGTACGGGCGCTGAG-CAGACCGAAGAGGCATAATGCGCAAGCCAGGATCG
** * * * * * *
35143343 GTTCAGT-CCCCTCTACGTGCTGTTGGTCCCGCTGCCACAACCCTCGGTTCGACT-GGG
257 GCCCAGTCCCCCTCTACGTGATATCGGTCCCGCTACCACAACCCTCAGTCCG-CTAGGG
* *
35143400 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCTACGAAACGGGCATGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAA
* ** *
35143465 CCGATCGAAGAGGTAGAATGTGTAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTATCGATCC
66 CCGATCG-AGAGGCAGAATGTACAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCC
* **
35143530 TGCTGCCAAAACCCTTGGTTCGGTCTGATCTTAGACTGGGAATGAACTTCGTATGC
130 TGCTACCGCAACCCTTGGTTCGGTCTGATCTTAGACTGGGAATGAA-TTCGTATGC
35143586 TTAGACTGGA
Statistics
Matches: 415, Mismatches: 76, Indels: 21
0.81 0.15 0.04
Matches are distributed among these distances:
313 2 0.00
314 2 0.00
315 194 0.47
316 210 0.51
317 5 0.01
318 2 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.21
Consensus pattern (314 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAA
CCGATCGAGAGGCAGAATGTACAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCCT
GCTACCGCAACCCTTGGTTCGGTCTGATCTTAGACTGGGAATGAATTCGTATGCATAAGTCAACC
CACGAAACGAGCGTACGGGCGCTGAGCAGACCGAAGAGGCATAATGCGCAAGCCAGGATCGGCCC
AGTCCCCCTCTACGTGATATCGGTCCCGCTACCACAACCCTCAGTCCGCTAGGG
Found at i:35143588 original size:26 final size:26
Alignment explanation
Indices: 35143559--35143611 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35143549 TCGGTCTGAT
*
35143559 CTTAGACTGG-GAATGAACTTCGTATG
1 CTTAGACTGGAG-ATGAACTCCGTATG
35143585 CTTAGACTGGAGATGAACTCCGTATG
1 CTTAGACTGGAGATGAACTCCGTATG
35143611 C
1 C
35143612 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAGATGAACTCCGTATG
Found at i:35144843 original size:26 final size:26
Alignment explanation
Indices: 35144792--35144844 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
35144782 GGCTCAAAAT
*
35144792 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
35144818 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
35144844 C
1 C
35144845 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:35145226 original size:159 final size:156
Alignment explanation
Indices: 35144817--35145247 Score: 386
Period size: 159 Copynumber: 2.7 Consensus size: 156
35144807 AACTCTATAT
* * * *
35144817 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAA
1 GCTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * **
35144882 CCGGTCGGAGGGGCAGAATGCGCAAATCAGGGATGGACCCGATCCCCC-CTACGTGCTATTGATC
66 CC-G-CCGAGAGGCAGAATGCG-AAAGCCGGGATCGACCCGATCCCCCTCTACGTGCTACCGATC
* * ** *
35144946 CTGCTGCTGCAACCCTCAGTCTGGTCTGA
128 CGGCTACCACAACCCTCAGTCTGGTCGGA
* ** * * * * *
35144975 TCTTAGA-TTGGGAATGAACTCCGTATGTATAAGTCAACCCACGAAACGAGTGTGTGGGCACTGA
1 GCTTAGACTT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * ** *
35145039 GCCGACCGAAGAGGCATAATGTGCAAGCCGTGGATCGACCCGGTCCCCCTCTGTGTGCTACCGGT
65 GCCG-CCG-AGAGGCAGAATGCGAAAGCCG-GGATCGACCCGATCCCCCTCTACGTGCTACCGAT
* *
35145104 CCGGCTACCACAACCCTTAGTCTGGGT-GGG
127 CCGGCTACCACAACCCTCAGTCT-GGTCGGA
* *
35145134 GCTTAGACTTGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACG-GACGTGCGGGCGCTCA
1 GCTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAG-CGTGCGGGCGCTCA
*
35145198 GCCAGCCTGAGAGGCAGAATGCGTAAGCCGAGGATC-AGCCCGATCCCCCT
65 GCC-GCC-GAGAGGCAGAATGCGAAAGCCG-GGATCGA-CCCGATCCCCCT
35145248 TTCTTACTGC
Statistics
Matches: 214, Mismatches: 49, Indels: 19
0.76 0.17 0.07
Matches are distributed among these distances:
157 8 0.04
158 82 0.38
159 117 0.55
160 7 0.03
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.19
Consensus pattern (156 bp):
GCTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGCCGAGAGGCAGAATGCGAAAGCCGGGATCGACCCGATCCCCCTCTACGTGCTACCGATCCGG
CTACCACAACCCTCAGTCTGGTCGGA
Found at i:35145632 original size:342 final size:343
Alignment explanation
Indices: 35144988--35145722 Score: 911
Period size: 342 Copynumber: 2.1 Consensus size: 343
35144978 TAGATTGGGA
*
35144988 ATGAACTCCGTATGTATAAGTCAACCCACGAAACGAGTGTGTGGGCACTGAGCCGACCGAAGAGG
1 ATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGTGTGTGGGCACTGAGCCGACCGAAGAGG
** * * **
35145053 CATAATGTGCAAGCCGTGGATCGACCCGGTCCCCCTCTGTGTGCTACCGGTCCGGCTACCACAAC
66 CATAATACGCAAGCCGAGGATCGACCCGGTCCCCCTCTGTGTGCTACCGATCCCACTACCACAAC
* * ** *
35145118 CCTTAGTCTGGGTGGGGCTTAGACTTGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGG
131 CCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGG
* * * * *
35145183 ACGTGCGGGCGCTCAGCCAGCCTGAGAGGCAGAATGCGTAAGCCGAGGATCAGCCCGATCCCCCT
196 ACGGGCGGGCGCTCAGCCAGACTAAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCGATCCCCCC
* * * * * * * *
35145248 TTCTTACTGCCAATCCTGTTGTCGCAACCCTTGGTTCGATCTGATCTTAGGCTGGGAATGAACTC
261 TACGTACTGCCAATCCTGCTGCCGCAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTC
* *
35145313 TGTTTGCTTAGACTAGAG
326 CGTATGCTTAGACTAGAG
* * * * * *
35145331 ATGAACTTCGTATGCAAAAGTCAACCCACGAAACGAGTGTGGGGGCACTGAGCTGGCCGGAGAGG
1 ATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGTGTGTGGGCACTGAGCCGACCGAAGAGG
* * ** *
35145396 CATAATACGTAAGCCGAGGATCGGCCC-GTCCCCCTCTGTGTGCTGTCGATCCCACTGCCACAAC
66 CATAATACGCAAGCCGAGGATCGACCCGGTCCCCCTCTGTGTGCTACCGATCCCACTACCACAAC
* * * *
35145460 CCTCGGTCCGACTGGGGCTTAGACATGTAATGAAGTCCCTATGCCTAAGCCAACCCGTGAAACGG
131 CCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGG
* * * *
35145525 GCGGGCGGGCTCTCAGCC-GACTAAAGAGGCA-AAGTGCGCAAGCCGTGGATC-GACTCGATCCC
196 ACGGGCGGGCGCTCAGCCAGACT-AAGAGGCAGAA-TGCGCAAGCCGAGGATCAG-CCCGATCCC
* * *
35145587 CCCTACGTGCTGTCAATCCTGCTGCCGCCACCCTCGATCCGATCTGATCTTAGACTGGGAATGAA
258 CCCTACGTACTGCCAATCCTGCTGCCGCAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAA
* *
35145652 CTCCGTATGCTTAGACTGGGG
323 CTCCGTATGCTTAGACTAGAG
* ** *
35145673 ATGAACTCCGTATGCCTAAGTCAACCCTTTGAAACGAGCGTGTGGGCACT
1 ATGAACTCCGTATGCATAAGTCAACCC-ACGAAACGAGTGTGTGGGCACT
35145723 CAAGCGGACC
Statistics
Matches: 330, Mismatches: 58, Indels: 8
0.83 0.15 0.02
Matches are distributed among these distances:
341 6 0.02
342 226 0.68
343 98 0.30
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (343 bp):
ATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGTGTGTGGGCACTGAGCCGACCGAAGAGG
CATAATACGCAAGCCGAGGATCGACCCGGTCCCCCTCTGTGTGCTACCGATCCCACTACCACAAC
CCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGG
ACGGGCGGGCGCTCAGCCAGACTAAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCGATCCCCCC
TACGTACTGCCAATCCTGCTGCCGCAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTC
CGTATGCTTAGACTAGAG
Found at i:35145664 original size:26 final size:26
Alignment explanation
Indices: 35145635--35145687 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
35145625 CCGATCTGAT
35145635 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
35145661 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35145687 C
1 C
35145688 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35146387 original size:25 final size:26
Alignment explanation
Indices: 35146353--35146404 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
35146343 CTGGTCTGAT
35146353 CTTAGACTGGAG-TGAACTCCGTATG
1 CTTAGACTGGAGATGAACTCCGTATG
* *
35146378 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGAGATGAACTCCGTATG
35146404 C
1 C
35146405 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 11 0.46
26 13 0.54
ACGTcount: A:0.23, C:0.19, G:0.29, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGAGATGAACTCCGTATG
Found at i:35146772 original size:25 final size:25
Alignment explanation
Indices: 35146695--35146772 Score: 102
Period size: 26 Copynumber: 3.0 Consensus size: 25
35146685 CCGATCCAAT
*
35146695 CTTAGACTGGGAATAAGCTCCGTATG
1 CTTAGACTGGGAATAA-CTCTGTATG
*
35146721 CTTAGATTGGGAATAAACTCTGTATG
1 CTTAGACTGGGAAT-AACTCTGTATG
* *
35146747 CTTAGACTGGGGATAACTCTGAATG
1 CTTAGACTGGGAATAACTCTGTATG
35146772 C
1 C
35146773 CTAAGTCAAC
Statistics
Matches: 46, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
25 11 0.24
26 33 0.72
27 2 0.04
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.29
Consensus pattern (25 bp):
CTTAGACTGGGAATAACTCTGTATG
Found at i:35147200 original size:171 final size:171
Alignment explanation
Indices: 35146898--35147212 Score: 402
Period size: 171 Copynumber: 1.8 Consensus size: 171
35146888 CCACTGCCGA
* * *
35146898 TCCTACTACCACAACCCTCGGTTCGGCTAGGGCTTAGACATGGAATGAACTTCGTATGCCTAAGC
1 TCCTACTACCACAACCCTCGGTTCGACTAGGGCTTAGACATGGAATGAACTCCATATGCCTAAGC
* * * * * **
35146963 CAACCCATGAAACGAGAGTGCTGGCACTCAGCCAGCCGGAGAGGCATAATGCACATGCTGGGGAT
66 CAACCCACGAAACGAGAGTGCGGGCACTCAGCCAGCCGAAAAGGCATAATGCACAAGCCAGGGAT
35147028 CAGCCCAATCCCCCTCTACCTGTTGTCGATCCTGCTGTCGG
131 CAGCCCAATCCCCCTCTACCTGTTGTCGATCCTGCTGTCGG
* * * *
35147069 TCCTGCTACGACAACCCTCGG-TCTGACTGGGGCTTAGATATGGAATGAACTCCATATGCCTAAG
1 TCCTACTACCACAACCCTCGGTTC-GACTAGGGCTTAGACATGGAATGAACTCCATATGCCTAAG
* ** **
35147133 CCAACCCACGAAACGAGCGTGCGGGTGCTCAG-CAGGCCGAAAAGGC-TGAATGCGTAAGCCAGG
65 CCAACCCACGAAACGAGAGTGCGGGCACTCAGCCA-GCCGAAAAGGCAT-AATGCACAAGCCAGG
*
35147196 GATCAGCCCGATCCCCC
128 GATCAGCCCAATCCCCC
35147213 CTGCGTGCTG
Statistics
Matches: 121, Mismatches: 20, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
170 5 0.04
171 116 0.96
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (171 bp):
TCCTACTACCACAACCCTCGGTTCGACTAGGGCTTAGACATGGAATGAACTCCATATGCCTAAGC
CAACCCACGAAACGAGAGTGCGGGCACTCAGCCAGCCGAAAAGGCATAATGCACAAGCCAGGGAT
CAGCCCAATCCCCCTCTACCTGTTGTCGATCCTGCTGTCGG
Found at i:35148075 original size:21 final size:20
Alignment explanation
Indices: 35148049--35148093 Score: 65
Period size: 19 Copynumber: 2.2 Consensus size: 20
35148039 GGGATCGGTC
35148049 CGGTCCCCCTCTGCGTGCTGT
1 CGGT-CCCCTCTGCGTGCTGT
*
35148070 CGGT-CCCTCTGTGTGCTGT
1 CGGTCCCCTCTGCGTGCTGT
35148089 CGGTC
1 CGGTC
35148094 TCGCTGCCAC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
19 18 0.82
21 4 0.18
ACGTcount: A:0.00, C:0.38, G:0.31, T:0.31
Consensus pattern (20 bp):
CGGTCCCCTCTGCGTGCTGT
Found at i:35148079 original size:19 final size:19
Alignment explanation
Indices: 35148055--35148093 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
35148045 GGTCCGGTCC
35148055 CCCTCTGCGTGCTGTCGGT
1 CCCTCTGCGTGCTGTCGGT
*
35148074 CCCTCTGTGTGCTGTCGGT
1 CCCTCTGCGTGCTGTCGGT
35148093 C
1 C
35148094 TCGCTGCCAC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.00, C:0.36, G:0.31, T:0.33
Consensus pattern (19 bp):
CCCTCTGCGTGCTGTCGGT
Found at i:35150169 original size:26 final size:26
Alignment explanation
Indices: 35150140--35150192 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
35150130 CCAATCCGAT
35150140 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
35150166 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
35150192 C
1 C
35150193 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:35151217 original size:158 final size:157
Alignment explanation
Indices: 35150895--35151415 Score: 539
Period size: 158 Copynumber: 3.3 Consensus size: 157
35150885 AACTCCGTAT
* * * * *
35150895 GCTTAGGCATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTACAGGCACTTAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCG-ACGGGCACTCAG
* ** * * *
35150960 TCGATTGGAGAGGCAGAATGCACAAGCCGGGGATCGACCCGATTCCCCCCTGTGTGCTGTCGATC
65 CCGACCGGAGAGGCAAAATGCACAAGCCGGGGATCGGCCCGA-TCCCCCCTGCGTGCTGTCGATC
* * *
35151025 CTACTACCATAACCCTCGGTCCGGTCCGA
129 CTGCTGCCACAACCCTCGGTCCGGTCCGA
* * * * * * *
35151054 TCTTAGACAAGGAATGAACTCTGTATGCATAAGTCAACCCATGAAATGAGCGAGCGGGCACTGAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGA-CGGGCACTCAG
* * * * *
35151119 CCGACCGAAGAGGCATAATG-GCAAGCCAGGGATCGGCCCGATCCCCCTCTGCGTGCT-TCCATT
65 CCGACCGGAGAGGCAAAATGCACAAGCCGGGGATCGGCCCGATCCCCC-CTGCGTGCTGTCGA-T
* * *
35151182 CCTGCTGCCACAACCCTTGGTCCGG-CTGGG
128 CCTGCTGCCACAACCCTCGGTCCGGTC-CGA
* * * * *
35151212 GCTTAGCCATGGAATGAACTCCCTATGCCTAAGCCAACCCAAGAAACG-GACGTCTGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAG-CGAC-GGGCACTCA
* * * *
35151276 GCCGGCCGGAGAGGCAAAATGCACAAGTCGGGGATCGGCTCGGTCCCCCCTGCGTGCTGTCGATC
64 GCCGACCGGAGAGGCAAAATGCACAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATC
*
35151341 CTGCTGCCACAACCCTCGCTCCGGTCCGA
129 CTGCTGCCACAACCCTCGGTCCGGTCCGA
* * * *
35151370 TCTTAAAC-TGGGAATGAACTCCATATGCCTAAGTCAACCCATGAAA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAA
35151416 AGAGTGTGCG
Statistics
Matches: 294, Mismatches: 58, Indels: 21
0.79 0.16 0.06
Matches are distributed among these distances:
157 13 0.04
158 188 0.64
159 93 0.32
ACGTcount: A:0.25, C:0.31, G:0.26, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGACGGGCACTCAGC
CGACCGGAGAGGCAAAATGCACAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCCT
GCTGCCACAACCCTCGGTCCGGTCCGA
Found at i:35153776 original size:26 final size:26
Alignment explanation
Indices: 35153747--35153799 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
35153737 CCGGTCCAAT
*
35153747 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
35153773 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35153799 C
1 C
35153800 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35155722 original size:26 final size:25
Alignment explanation
Indices: 35155674--35155723 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 25
35155664 CTCAAAATCC
*
35155674 TAGACTGGAATGAACTTCATATGCT
1 TAGACTGGAATGAACTCCATATGCT
*
35155699 TAGACATGGAATGAACTCCGTATGC
1 TAGAC-TGGAATGAACTCCATATGC
35155724 CTAAGCAAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 5 0.23
26 17 0.77
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.28
Consensus pattern (25 bp):
TAGACTGGAATGAACTCCATATGCT
Found at i:35156054 original size:24 final size:26
Alignment explanation
Indices: 35156013--35156063 Score: 70
Period size: 24 Copynumber: 2.0 Consensus size: 26
35156003 TCTGATCGAT
35156013 CTTAGACTGGGAATGAACACCCTATG
1 CTTAGACTGGGAATGAACACCCTATG
* *
35156039 CTTAGA-TGGG-ATGAACTCCGTATG
1 CTTAGACTGGGAATGAACACCCTATG
35156063 C
1 C
35156064 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 13 0.57
25 4 0.17
26 6 0.26
ACGTcount: A:0.27, C:0.22, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACCCTATG
Found at i:35157499 original size:159 final size:157
Alignment explanation
Indices: 35157105--35157568 Score: 470
Period size: 159 Copynumber: 2.9 Consensus size: 157
35157095 AACTCTATAT
* * * * *
35157105 GCTTAGACATGGAATGAACTCTGTATACCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAG
* * * *
35157170 -TCGACCGGAGAGGCAGAATGCACAAGCCAGAGACCGACCC-AGTCCCCCCTGTGTGCTGTTGAT
66 CTGGA-CGGAGAGGCAGAATGCACAAGCCAG-GATCGACCCGA-TCCCCCCTGCGTGCTGTCGAT
* * * *
35157233 CTTGCTACTGCAACCCTCTGTTCAATCTGA
128 CCTGCTACCGCAACCCTCGGTCCAATCTGA
* * * * * *
35157263 TCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAATGAGCGTACGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCA
* * * * * * *
35157327 GCCGGCCGAAGAGGCATAATGCGCAAGCCAAGGATCGACCCGATCCCCCTCTGCATGCTGTCGGT
65 GCTGGACGGAGAGGCAGAATGCACAAGCC-AGGATCGACCCGATCCCCC-CTGCGTGCTGTCGAT
* * * *
35157392 CCCGCTACCACAACCCTCGGTCCGA-CTAGG
128 CCTGCTACCGCAACCCTCGGTCCAATCT-GA
*
35157422 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACG-GTCGTACGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAG-CGTACGGGCGCTCA
* * * * * * *
35157486 GCTGGATGGAGAGGCAGAATGCATAAGCCGGGGATCGGCCAGTTCCCCCCTGCGTGCTGCCGATC
65 GCTGGACGGAGAGGCAGAATGCACAAGCC-AGGATCGACCCGATCCCCCCTGCGTGCTGTCGATC
35157551 CTGCTACCGCAACCCTCG
129 CTGCTACCGCAACCCTCG
35157569 ATTCGGTCTG
Statistics
Matches: 244, Mismatches: 54, Indels: 16
0.78 0.17 0.05
Matches are distributed among these distances:
157 1 0.00
158 118 0.48
159 124 0.51
160 1 0.00
ACGTcount: A:0.25, C:0.31, G:0.26, T:0.18
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAG
CTGGACGGAGAGGCAGAATGCACAAGCCAGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCCT
GCTACCGCAACCCTCGGTCCAATCTGA
Found at i:35158906 original size:26 final size:26
Alignment explanation
Indices: 35158855--35158907 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
35158845 TTGGTTTGAT
*
35158855 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
35158881 CTTAGACTAGGGATGAACTCTATATG
1 CTTAGACTAGGAATGAACTCCATATG
35158907 C
1 C
35158908 CAAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:35160931 original size:158 final size:158
Alignment explanation
Indices: 35160641--35161132 Score: 469
Period size: 158 Copynumber: 3.1 Consensus size: 158
35160631 GCTTAGACAT
* * * * * * ** * *
35160641 GGAATGAACTCCGTATACCTAAGCCAACCCACGAAACGAACGCGCAGGCGCTCAGTCGGTCGGAG
1 GGAATGAACTCCATATGCATAAGCCAACCCACGAAACGAGCGTGCGGGTACTCAGTCGGCCGGAT
* * * * * * *
35160706 AGGTAGAATGCGCAAGCCGGGGATCGACCCAGTCCCCCATGCATGCTGTCAATTCTACTACTGCA
66 AGATAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTGTCAATCCTACTGCCGCA
35160771 ACCCTCGGTCCGGTCT-GATCATAGACTG
131 ACCCTCGGTCCGGTCTCGATC-TAGACTG
* * * * *
35160799 GGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGTGTGC-GGTCGCTGAG-CTGGCC-G
1 GGAATGAACTCCATATGCATAAGCCAACCCACGAAACGAGCGTGCGGGT-ACTCAGTC-GGCCGG
* * **
35160861 A-AGATCATAATGCGCAAGCCGGGGATCGACCTGGTCCCCCTCTGCGTGCTGTCAATCCCGCTGC
64 ATAGAT-AGAATGCGCAAGCCGGGGATCGACCCGGTCCCCC-CTGCGTGCTGTCAATCCTACTGC
* * * **
35160925 CACAACCCTCGGTCTGG-CTGGGGCTTAGACAT-
127 CGCAACCCTCGGTCCGGTCTCGATC-TAGAC-TG
* * * * *
35160957 GGAATGAACTCCCTATGCCTAAGCCAAGCCATGAAACGGGCGTGCGGGTACTCAGTCGGCCGGAT
1 GGAATGAACTCCATATGCATAAGCCAACCCACGAAACGAGCGTGCGGGTACTCAGTCGGCCGGAT
* * * *
35161022 AGGTAGAATGCGTAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGCCAATCCTACTGCCGCA
66 AGATAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTGTCAATCCTACTGCCGCA
*
35161087 ACCCTCGGTCCAGT-TCGATCTAAGACTG
131 ACCCTCGGTCCGGTCTCGATCT-AGACTG
* *
35161115 AGCATGAACTCCATATGC
1 GGAATGAACTCCATATGC
35161133 TTAGACTGGG
Statistics
Matches: 270, Mismatches: 51, Indels: 26
0.78 0.15 0.07
Matches are distributed among these distances:
156 3 0.01
157 40 0.15
158 187 0.69
159 37 0.14
160 3 0.01
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (158 bp):
GGAATGAACTCCATATGCATAAGCCAACCCACGAAACGAGCGTGCGGGTACTCAGTCGGCCGGAT
AGATAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTGTCAATCCTACTGCCGCA
ACCCTCGGTCCGGTCTCGATCTAGACTG
Found at i:35161138 original size:26 final size:26
Alignment explanation
Indices: 35161109--35161158 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
35161099 GTTCGATCTA
35161109 AGACTGAGCATGAACTCCATATGCTT
1 AGACTGAGCATGAACTCCATATGCTT
* * *
35161135 AGACTGGGGATGAACTCCGTATGC
1 AGACTGAGCATGAACTCCATATGC
35161159 CTAAGTCAAC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (26 bp):
AGACTGAGCATGAACTCCATATGCTT
Found at i:35162731 original size:26 final size:26
Alignment explanation
Indices: 35162695--35162747 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
35162685 CCGGTCTTAT
35162695 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
35162721 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
35162747 C
1 C
35162748 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:35163839 original size:159 final size:158
Alignment explanation
Indices: 35163432--35163879 Score: 465
Period size: 159 Copynumber: 2.8 Consensus size: 158
35163422 AACTCCATAT
* * * *
35163432 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCATAAAACGAGCGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGTGTACGGGCGCTCAG
* * * ** *
35163497 CCGACCGGAGAGGCAGAATGCACAAGCCT-GGGATCAACCCGGTACCCCCTACGTGCTATCGATC
66 CCGACCGGAGAGGCAGAATGCGCAAG-CTGGGGATCAGCCCGGTCCCCCCTGTGTGCTGTCGATC
* ** *
35163561 CTGCTGCTGCAACCATTGATCCGGCCTGA
130 CTACTGCCACAACCATTGATCCAGCCTGA
* * * * * *
35163590 TCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAATGAGTGTTCGGGCGTTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGTGTACGGGCGCTCA
* * * *
35163654 GCCGACCGAAGAGGCATAGTGCGCAAGCTGGGGATCAGCCCGGTCCCCCTCTGTGTGCTGTCGGT
65 GCCGACCGGAGAGGCAGAATGCGCAAGCTGGGGATCAGCCCGGTCCCCC-CTGTGTGCTGTC-GA
* *
35163719 TCC-ACTGCCACAACCCTTGATCCAG-CTGGG
128 TCCTACTGCCACAACCATTGATCCAGCCT-GA
* * * *
35163749 GCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCATGAAATGGGTGTGCGGGGGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGTGTACGGGCGCTCAG
* ** * * * * *
35163814 TCGGTCGGAGAGGCAGAATGTGCAAGCCGGGGGTCAGCTCGATCCCCCCTGTGTGCTG-CTGATC
66 CCGACCGGAGAGGCAGAATGCGCAAGCTGGGGATCAGCCCGGTCCCCCCTGTGTGCTGTC-GATC
35163878 CT
130 CT
35163880 GCTATCGCAA
Statistics
Matches: 235, Mismatches: 48, Indels: 14
0.79 0.16 0.05
Matches are distributed among these distances:
157 8 0.03
158 104 0.44
159 118 0.50
160 5 0.02
ACGTcount: A:0.23, C:0.28, G:0.29, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGTGTACGGGCGCTCAG
CCGACCGGAGAGGCAGAATGCGCAAGCTGGGGATCAGCCCGGTCCCCCCTGTGTGCTGTCGATCC
TACTGCCACAACCATTGATCCAGCCTGA
Found at i:35163944 original size:26 final size:26
Alignment explanation
Indices: 35163908--35163960 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
35163898 CTGATCTGAT
*
35163908 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
35163934 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
35163960 C
1 C
35163961 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:35164311 original size:26 final size:26
Alignment explanation
Indices: 35164275--35164327 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
35164265 TCGGTTCGAT
35164275 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
35164301 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35164327 C
1 C
35164328 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35164316 original size:367 final size:368
Alignment explanation
Indices: 35163710--35164375 Score: 1009
Period size: 367 Copynumber: 1.8 Consensus size: 368
35163700 CCCTCTGTGT
* *
35163710 GCTGTCGGTTCCACTGCCACAACCCTTGATCCAGCTGGGGCTTAGACATGGAATGAACTCCTTAT
1 GCTGTCGGTTCCACTGCCACAACCCTTGATCCAGCTGGGGCTTAGACATAGAATGAACTCCCTAT
* * ** * * * *
35163775 GCCTAAGCCAACCCATGAAATGGGTGTGCGGGGGCTCAGTCGGTCGGAGAGGCAGAATGTGCAAG
66 GCCTAAGCCAACCCATGAAACGAGCCTGCGGGCGCTCAGTCGGCCAGAGAGGCAGAATGCGCAAG
* * ** * *
35163840 CCGGGGGTCAGCTCGATCCCCCCTGTGTGCTGCTGATCCTGCTATCGCAACCCTCTGTCTGATCT
131 CCGGGGATCAGCTCGACCCCCCCTGCATGCTGCTGATCCTACTATCGCAACCCTCTGTCGGATCT
*
35163905 GATCTTAGACTGGGAATGAACTCTATATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAA
196 GATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAA
*
35163970 CCCATGAAACAAGCGTGCGGGCGCTCAGCCGACCAGAGAGGCCGACCGGAGAGGCATAATGCGTA
261 CACATGAAACAAGCGTGCGGGCGCTCAGCCGACCAGAGAGGCCGACCGGAGAGGCATAATGCGTA
35164035 AGCCGGGGATCAGCCCTGTCCCCCTTTGTGTGCTATCGATCCC
326 AGCCGGGGATCAGCCCTGTCCCCCTTTGTGTGCTATCGATCCC
* * * *
35164078 GCTGTCGG-TCCTGCTGCCACAACCCTTGGTCCGGCTTGGGCTTAGACATAGAATGAACTCCCTA
1 GCTGTCGGTTCC-ACTGCCACAACCCTTGATCCAGCTGGGGCTTAGACATAGAATGAACTCCCTA
*
35164142 TGCCTAAGCCAACCCATG-AACGAGCCTGCGGGCGCTCAGTCGGCCAGAGAGGCAGAATGCGTAA
65 TGCCTAAGCCAACCCATGAAACGAGCCTGCGGGCGCTCAGTCGGCCAGAGAGGCAGAATGCGCAA
* *
35164206 GCCGGGGATCGGCTCGGCCCCCCCTGCATGCTG-TCGATCCTACTATCGCAACCCT-TGGTTCGG
130 GCCGGGGATCAGCTCGACCCCCCCTGCATGCTGCT-GATCCTACTATCGCAACCCTCT-G-TCGG
* * *
35164269 TTC-GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAG
192 ATCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCATATGCCTAAG
35164333 TCAACACATGAAACAAGCGTGCGGGCGCTCAGCCGACCAGAGA
257 TCAACACATGAAACAAGCGTGCGGGCGCTCAGCCGACCAGAGA
35164376 AGTAGGATGC
Statistics
Matches: 266, Mismatches: 28, Indels: 9
0.88 0.09 0.03
Matches are distributed among these distances:
366 2 0.01
367 187 0.70
368 77 0.29
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.21
Consensus pattern (368 bp):
GCTGTCGGTTCCACTGCCACAACCCTTGATCCAGCTGGGGCTTAGACATAGAATGAACTCCCTAT
GCCTAAGCCAACCCATGAAACGAGCCTGCGGGCGCTCAGTCGGCCAGAGAGGCAGAATGCGCAAG
CCGGGGATCAGCTCGACCCCCCCTGCATGCTGCTGATCCTACTATCGCAACCCTCTGTCGGATCT
GATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAA
CACATGAAACAAGCGTGCGGGCGCTCAGCCGACCAGAGAGGCCGACCGGAGAGGCATAATGCGTA
AGCCGGGGATCAGCCCTGTCCCCCTTTGTGTGCTATCGATCCC
Found at i:35171273 original size:159 final size:158
Alignment explanation
Indices: 35170918--35171292 Score: 373
Period size: 158 Copynumber: 2.4 Consensus size: 158
35170908 AACTCCGTAT
* * *
35170918 GCTTAGACATGAAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTAAG
* **
35170983 CCGATCGGAGAGGCAGAATGCACAAGTCGGGGATCGACCCAATCCCCCATACGTGCTGTTGATCC
66 CCGATCGGAGAGGCAGAATGCACAAGCCGGGGATCGACCCAATCCCCCATACGTGCTACTGATCC
** *
35171048 TACTACTGCAACCCTCGGTCTGGTCTGA
131 TACTACCACAACCCTCGGTCTGGACTGA
* * * * * * *
35171076 TCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCATAAAATGAGCGTGCGGGCGCTAA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTAA
* * ** ** * * * *
35171140 GCCGATCGGAGAGGTATAATGTGCAAGCCGGGGATCGGTTCGATTCCCCTC-TGCGTGCTACTGG
65 GCCGATCGGAGAGGCAGAATGCACAAGCCGGGGATC-GACCCAATCCCC-CATACGTGCTACTGA
*
35171204 T-CTCACTGCCACAACCCTCGGTCT-GACTAGA
128 TCCT-ACTACCACAACCCTCGGTCTGGACT-GA
* * * * *
35171235 GCTTAGACATGGAATGAACTAGC-TAGGCCTAAGCCAACCCACGAAACGGGCGTACGGG
1 GCTTAGACATGGAATGAACT-CCATATGCCTAAGCCAACCCACAAAACGAGCGTGCGGG
35171293 TGCTCAGTCA
Statistics
Matches: 173, Mismatches: 37, Indels: 13
0.78 0.17 0.06
Matches are distributed among these distances:
157 1 0.01
158 88 0.51
159 81 0.47
160 3 0.02
ACGTcount: A:0.26, C:0.28, G:0.26, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTAAG
CCGATCGGAGAGGCAGAATGCACAAGCCGGGGATCGACCCAATCCCCCATACGTGCTACTGATCC
TACTACCACAACCCTCGGTCTGGACTGA
Found at i:35171434 original size:26 final size:26
Alignment explanation
Indices: 35171405--35171457 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
35171395 CCGATCTGAT
35171405 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
35171431 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
35171457 C
1 C
35171458 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:35171848 original size:505 final size:497
Alignment explanation
Indices: 35170891--35171988 Score: 1307
Period size: 505 Copynumber: 2.2 Consensus size: 497
35170881 GTGGCTCAAA
* *
35170891 ATCTTAGATTGGGAATGAACTCCGTATGCTTAGACATGAAATGAACTCCATATGCCTAAGCCAAC
1 ATCTTAGATTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * *
35170956 CCACGAAACGAGCGTGCGGGCACTCAGCCGATCGGAGAGGCAGAATGCACAAGTCGGGGATCGAC
66 CCACGAAACGAGCGTGCGGGCGCTCA---GATCGGACA-GCAAAATGCACAAGCCGGGGACCGAC
** * * *
35171021 CCAATCCCCCATACGTGCTGTTGATCCTACTACTGCAACCCTCGGTCTGGTCTGATCTTAGACTG
127 CCAATCCCCCATACGTGCTGTCAATCCTACTACTGCAACCCTCGATCTGGTCTAATCTTAGACAG
* * *
35171086 GGAATGAACTCCGTATGCATAAGTCAACCCATAAAATGAGCGTGCGGGCGCTAAGCCGATCGGAG
192 GGAATGAACTCCGTATCCATAAGTCAACCCACAAAATGAGCGTGCGGGCGCTAAGCAGATCGGAG
* * ** * * *
35171151 AGGTATAATGTGCAAGCCGGGGATCGGTTCGATTCCCCTCTGCGTGCTACTGGTCTCACTGCCAC
257 AGGCATAATGCGCAAGCCCAGGATCGGTTCGAGTCCCCTCTGCATGCTACTGGTCCCACTGCCAC
* *
35171216 AACCCTCGGTCTGACTAGAGCTTAGACATGGAATGAACTAGCTAGGCCTAAGCCAACCCACGAAA
322 AACCCTCAGTCTGACTAGAGCTTAGACATGGAATGAACTACCTAGGCCTAAGCCAACCCACGAAA
* * * * * * *
35171281 CGGGCGTACGGGTGCTCAGTCAGCCGGAGAGGTAGAATGCGTAACCCGGGGATTGGCCCGGTCCC
387 CGGGCGTACGGGCGCTCAGCCAGCCAGAGAGGCAGAATGCGCAACCCGAGGATCGGCCCGGTCCC
*
35171346 -CCTACGTGCTATCGATCCTGCTGCTGGTACTACTACTGCAACCCTCGATCCGA-TCTG
452 TCCTACGTGCTACCGA---T-C--C---TACT-CT-C-GCAACCCTCGATCCGATTC-G
*
35171403 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
1 ATCTTAGATTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
* * **
35171468 CCACGAAACGAGCATGCGGGTGCTCAG-TCGG-CA-CAAAATGCACAAGCCGGGGACCGACCTGA
66 CCACGAAACGAGCGTGCGGGCGCTCAGATCGGACAGCAAAATGCACAAGCCGGGGACCGACCCAA
* * * *
35171530 TCCCCCCTGCGTGCTGTCAATCCTGCT-GTCGCAACCCTCGATCTGGTCTAATCTTAGACAGGGA
131 TCCCCCATACGTGCTGTCAATCCTACTACT-GCAACCCTCGATCTGGTCTAATCTTAGACAGGGA
** * * * *
35171594 ATGAACTTTGTATCCCA-AAGTCAACCCACGAAATGAGCGTGCGGGTGCTGAGCAGATTGGAGAG
195 ATGAACTCCGTAT-CCATAAGTCAACCCACAAAATGAGCGTGCGGGCGCTAAGCAGATCGGAGAG
* * * * *
35171658 GCATAATGCGCAAGCCCAGGATTGGTTCG-GTCCCTTTTTGCATGCT-GTCGGTCCCGCTGCCAC
259 GCATAATGCGCAAGCCCAGGATCGGTTCGAGTCCC-CTCTGCATGCTACT-GGTCCCACTGCCAC
* * * * * *
35171721 AACCCTTAGTCTGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGTCAACCCACGAAA
322 AACCCTCAGTCTGACTAGAGCTTAGACATGGAATGAACTACCTAGGCCTAAGCCAACCCACGAAA
* * *
35171786 CGGGCGTACGGGCGCTCAGCCAGCTAGAGAGGCAGAATGTGCAAGCCGAGGATCGGCCCGGTCCC
387 CGGGCGTACGGGCGCTCAGCCAGCCAGAGAGGCAGAATGCGCAACCCGAGGATCGGCCCGGTCCC
* *
35171851 TCCTGCGTGCTACCGATCCTACTGTCGCAACCCTCGATCCGATTCG
452 TCCTACGTGCTACCGATCCTACTCTCGCAACCCTCGATCCGATTCG
* * * **
35171897 ATCTTAGATTGAGAATGAACTCCGTATGCTTAGAC-TGGGGATGAACTTCGTATGCCTAAGTTAA
1 ATCTTAGATTGGGAATGAACTCCGTATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAA
*
35171961 CCCATGAAACGAGCGTGCGGGCGCTCAG
65 CCCACGAAACGAGCGTGCGGGCGCTCAG
35171989 CCGACCAAAG
Statistics
Matches: 507, Mismatches: 72, Indels: 32
0.83 0.12 0.05
Matches are distributed among these distances:
493 1 0.00
494 98 0.19
495 3 0.01
496 1 0.00
497 4 0.01
500 1 0.00
502 1 0.00
503 1 0.00
504 6 0.01
505 285 0.56
506 15 0.03
507 1 0.00
508 4 0.01
509 1 0.00
512 85 0.17
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.21
Consensus pattern (497 bp):
ATCTTAGATTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
CCACGAAACGAGCGTGCGGGCGCTCAGATCGGACAGCAAAATGCACAAGCCGGGGACCGACCCAA
TCCCCCATACGTGCTGTCAATCCTACTACTGCAACCCTCGATCTGGTCTAATCTTAGACAGGGAA
TGAACTCCGTATCCATAAGTCAACCCACAAAATGAGCGTGCGGGCGCTAAGCAGATCGGAGAGGC
ATAATGCGCAAGCCCAGGATCGGTTCGAGTCCCCTCTGCATGCTACTGGTCCCACTGCCACAACC
CTCAGTCTGACTAGAGCTTAGACATGGAATGAACTACCTAGGCCTAAGCCAACCCACGAAACGGG
CGTACGGGCGCTCAGCCAGCCAGAGAGGCAGAATGCGCAACCCGAGGATCGGCCCGGTCCCTCCT
ACGTGCTACCGATCCTACTCTCGCAACCCTCGATCCGATTCG
Found at i:35171928 original size:26 final size:26
Alignment explanation
Indices: 35171899--35171951 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
35171889 CCGATTCGAT
*
35171899 CTTAGATTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
* * *
35171925 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
35171951 C
1 C
35171952 CTAAGTTAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:35172943 original size:27 final size:26
Alignment explanation
Indices: 35172891--35172944 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
35172881 TCGATCTGAT
*
35172891 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
35172917 CTTAGACTGGGGATGAAACTTCATATG
1 CTTAGACTGGGAATG-AACTCCATATG
35172944 C
1 C
35172945 CAAAGTCAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 14 0.58
27 10 0.42
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:35174707 original size:26 final size:26
Alignment explanation
Indices: 35174678--35174730 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35174668 CCGGTCTGAT
35174678 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
*
35174704 CTTAGACTAGGGATGAACTCTGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
35174730 C
1 C
35174731 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:35175720 original size:159 final size:159
Alignment explanation
Indices: 35175426--35175922 Score: 398
Period size: 159 Copynumber: 3.1 Consensus size: 159
35175416 ACTCCGTATG
* * * * * * *
35175426 CTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCTATGAAACGAGGGTGCAGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTAAGCATAAGCCAACCAACGAAACGAGCGTGCAGGCACTCAGC
** * *
35175491 CGACCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGATCCGCCCCAATGTGCTGTCGATCC
66 CGACCAAAGAGGCAGAATGCGCAAGTCGAGGATCAGCCCGATCCGCCCCAATGTGCTGTCGATCC
35175556 TGCTGCCACAACCCTGTGTTCAGTCTGAT
131 TGCTGCCACAACCCTGTGTTCAGTCTGAT
* * *
35175585 CTTAGAC-TGGGAATGAACTCCGTAAGCATAAGTCAACCAACGAAACGAGCGTGCAGGCATTGAG
1 CTTAGACAT-GGAATGAACTCCGTAAGCATAAGCCAACCAACGAAACGAGCGTGCAGGCACTCAG
* * * * * ** * *
35175649 CCGGCCAAAGAGGCATAATGCGCAAGTCGAGGATCATCTCGGTCC-CCCTCTGTGTGTTGTCGGT
65 CCGACCAAAGAGGCAGAATGCGCAAGTCGAGGATCAGCCCGATCCGCCC-CAATGTGCTGTCGAT
* * * **
35175713 -CTCGCTGCCACAACCCT-TGGTCCGACTGGGG
129 CCT-GCTGCCACAACCCTGTGTTCAGTCT-GAT
* * * * * * * * * *
35175744 CTTATAAATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGTGTGCGGGCACTCAGC
1 CTTAGACATGGAATGAACTCCGTAAGCATAAGCCAACCAACGAAACGAGCGTGCAGGCACTCAGC
*** * * ** * * *
35175809 CGACTGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCC-AGTCC-CCCTTACGTGCTGCCAATC
66 CGACCAAAGAGGCAGAATGCGCAAGTCGAGGATCAGCCCGA-TCCGCCCCAATGTGCTGTCGATC
* * * * *
35175872 CTGCTGCCGCAACCCT-CGATCCGATCCGAT
130 CTGCTGCCACAACCCTGTGTTCAG-TCTGAT
35175902 CTTAGAC-TAGGAATGAACTCC
1 CTTAGACAT-GGAATGAACTCC
35175923 ATATTCTTAG
Statistics
Matches: 262, Mismatches: 67, Indels: 19
0.75 0.19 0.05
Matches are distributed among these distances:
157 1 0.00
158 57 0.22
159 203 0.77
160 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCCGTAAGCATAAGCCAACCAACGAAACGAGCGTGCAGGCACTCAGC
CGACCAAAGAGGCAGAATGCGCAAGTCGAGGATCAGCCCGATCCGCCCCAATGTGCTGTCGATCC
TGCTGCCACAACCCTGTGTTCAGTCTGAT
Found at i:35176547 original size:21 final size:21
Alignment explanation
Indices: 35176523--35176562 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
35176513 CAGCCGGTCG
35176523 TTTGCGTGCTGTCGATCCCCC
1 TTTGCGTGCTGTCGATCCCCC
35176544 TTTGCGTGCTGTCGATCCC
1 TTTGCGTGCTGTCGATCCC
35176563 GCTGTCGGTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.05, C:0.35, G:0.25, T:0.35
Consensus pattern (21 bp):
TTTGCGTGCTGTCGATCCCCC
Found at i:35176799 original size:26 final size:27
Alignment explanation
Indices: 35176761--35176818 Score: 75
Period size: 26 Copynumber: 2.2 Consensus size: 27
35176751 CGGGTTTGAT
35176761 CTTAGACTGGGAATGAACTCCATATG-
1 CTTAGACTGGGAATGAACTCCATATGC
* *
35176787 CTTAGACAT-GGAATGAATTCCGTATGC
1 CTTAGAC-TGGGAATGAACTCCATATGC
35176814 CTTAG
1 CTTAG
35176819 CCAACCCATG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
26 22 0.79
27 6 0.21
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.29
Consensus pattern (27 bp):
CTTAGACTGGGAATGAACTCCATATGC
Found at i:35176917 original size:184 final size:185
Alignment explanation
Indices: 35176602--35177060 Score: 554
Period size: 184 Copynumber: 2.5 Consensus size: 185
35176592 TCCGGCTGGG
* * *
35176602 GCTTAGACATGGAATGAACTGCC-TATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCACTCA
1 GCTTAGACATGGAATGAA-TTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCA
* ** *
35176666 G-CCAGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCGGCTTGATCCCTCCTGTGTGCTGTCGAT
65 GTCCAGCCAGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGATCCCTCCTGTGTGCTATCGAT
*** **
35176730 CCTGCTG-CTGCAACCCTCGATCGGGTTTGATCTTAGACTGGGAATGAACTCCATAT
130 CCTGCTGTC-GCAACCCTCGATCCAATCCGATCTTAGACTGGGAATGAACTCCATAT
* * * *
35176786 GCTTAGACATGGAATGAATTCCGTATGCCTTAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAATTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* * * * * * *
35176851 TCC-GTCGGAGAGGCAGAATGTGGAAGTCGAGGATCGGCCCGATCGCC-CTTGTGTGCTATTGAT
66 TCCAGCCAGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGATC-CCTCCTGTGTGCTATCGAT
* *
35176914 CCTGCTGTCGCAACCCTTGATCCAATCCGATCTTAGACTGGGAATGAACTCCGTAT
130 CCTGCTGTCGCAACCCTCGATCCAATCCGATCTTAGACTGGGAATGAACTCCATAT
* * * *
35176970 GCTTAGAC-TAGGGATGAACTCCGTATGCCTAAGTCAACCCACCAAATGAGCGTGCGGGCGCTCA
1 GCTTAGACAT-GGAATGAATTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCA
* *
35177034 GTCGA-CCAGAGAGGCAGGATGCGCAAG
65 GTCCAGCCAGAGAGGCAGAATGCGCAAG
35177061 TCGGGGATTG
Statistics
Matches: 230, Mismatches: 39, Indels: 12
0.82 0.14 0.04
Matches are distributed among these distances:
183 4 0.02
184 221 0.96
185 5 0.02
ACGTcount: A:0.24, C:0.27, G:0.29, T:0.21
Consensus pattern (185 bp):
GCTTAGACATGGAATGAATTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
TCCAGCCAGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGATCCCTCCTGTGTGCTATCGATC
CTGCTGTCGCAACCCTCGATCCAATCCGATCTTAGACTGGGAATGAACTCCATAT
Found at i:35176974 original size:26 final size:26
Alignment explanation
Indices: 35176945--35176997 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
35176935 CCAATCCGAT
35176945 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
35176971 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
35176997 C
1 C
35176998 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:35177704 original size:26 final size:26
Alignment explanation
Indices: 35177666--35177718 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
35177656 GGCTCAAAAT
* *
35177666 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAACGAACTCCGTATG
35177692 CTTAGACAT-GGAACGAACTCCGTATG
1 CTTAGAC-TGGGAACGAACTCCGTATG
35177718 C
1 C
35177719 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAACGAACTCCGTATG
Found at i:35178193 original size:158 final size:158
Alignment explanation
Indices: 35177692--35178193 Score: 464
Period size: 158 Copynumber: 3.2 Consensus size: 158
35177682 ACTCTGTATG
* * * *
35177692 CTTAGACATGGAACGAACTCCGTATGCCTAAGCCAACCTATGAAACGAGGGTGCAAGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCAGC
* * *
35177757 CGACCGGAGAGGTAGAATGCGCAAGCCGGGGAT-AGGCCCGGTCCCCCCTACATGCTATCGATCC
66 CGACCAGAGAGGCAGAATGCGCAAGCCGGGGATCA-GCCCGGTCCCCCCTGCATGCTATCGATCC
* *
35177821 TACT-TCTACAACCCTCAGT-TCAGTCTGAT
130 TACTATC-ACAACCCTCAGTCTGACTC-GAT
* * * * * * * * *
35177850 CTTAGAC-TGGGAATGAACTCCGTATACATAAGTCAACCCGTAAAACAAGCGTTCGGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCAG
* * * *
35177914 CC-AGCC-GAAGAGGCATAATGTGCAAGCTGGGGATC-GACCCGATCCCCCTCTGCATGCTATCG
65 CCGA-CCAG-AGAGGCAGAATGCGCAAGCCGGGGATCAG-CCCGGTCCCCC-CTGCATGCTATCG
* * * * * * **
35177976 GTCCCACTACCACAACCCTCGGTCTGGCTGGGG
126 ATCCTACTATCACAACCCTCAGTCTGACTCGAT
* * * *
35178009 CTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCCATGAAATTGA-CGTGCAGGCACTCAG
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAA-CGAGCGTGCAGGCGCTCAG
* * * * *
35178073 CCGATCAGAGAGGCAGAATGCGTAAGCCGGGGATCAGTCCGGTCCCCCCTGCGTGCTGTCGATCC
65 CCGACCAGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCCTGCATGCTATCGATCC
* * * *
35178138 TGCTATCGCAACCCTCAGTCTGATTCAAT
130 TACTATCACAACCCTCAGTCTGACTCGAT
35178167 CTTAGAC-TGGAAATGAACTCCGTATGC
1 CTTAGACATGG-AATGAACTCCGTATGC
35178194 TTAGACTGGG
Statistics
Matches: 265, Mismatches: 65, Indels: 28
0.74 0.18 0.08
Matches are distributed among these distances:
157 7 0.03
158 138 0.52
159 112 0.42
160 8 0.03
ACGTcount: A:0.25, C:0.30, G:0.25, T:0.20
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCAGC
CGACCAGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCCTGCATGCTATCGATCCT
ACTATCACAACCCTCAGTCTGACTCGAT
Found at i:35178208 original size:26 final size:26
Alignment explanation
Indices: 35178167--35178245 Score: 122
Period size: 26 Copynumber: 3.0 Consensus size: 26
35178157 CTGATTCAAT
**
35178167 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
*
35178193 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGGATGAACTCCGTATG
*
35178219 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
35178245 C
1 C
35178246 CTAAGTCAAC
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCGTATG
Found at i:35179269 original size:26 final size:25
Alignment explanation
Indices: 35179231--35179285 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 25
35179221 CTGGTCTAAT
*
35179231 CTTAGACTGGGAATGCACTCCATATG
1 CTTAGACTGGGAATGAACTCC-TATG
35179257 CTTAGACAT-GGAATGAACTCCTATG
1 CTTAGAC-TGGGAATGAACTCCTATG
35179282 CTTA
1 CTTA
35179286 AGCCAACCCA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
25 8 0.30
26 18 0.67
27 1 0.04
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (25 bp):
CTTAGACTGGGAATGAACTCCTATG
Found at i:35179779 original size:26 final size:26
Alignment explanation
Indices: 35179728--35179780 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
35179718 CCGATCCGAT
**
35179728 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
35179754 CTTAGACTAGGG-ATGAACTCCATATG
1 CTTAGACT-GGGAATGAACTCCATATG
35179780 C
1 C
35179781 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:35180277 original size:183 final size:184
Alignment explanation
Indices: 35179940--35180305 Score: 456
Period size: 183 Copynumber: 2.0 Consensus size: 184
35179930 GACTGGGAAC
* *
35179940 TAGACAAGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGAGCTCAGCCG
1 TAGACAAGGAATGAACTCCACATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGAGCTCAGCAG
* * * ** *
35180005 GCTAGAGAGGTAGAATGCGTAAGCTAGGGACCAACCTAGTCCCCCCTGTGTGCTGCAGATCCTGC
66 GCTAGAGAGGTAGAATGCGCAAGCTAGGGACCAACCGAGTCCCCACTACGAGCTGCAGATCCTGC
* * * **
35180070 TGCCGCAACCCTCGATTTGGTCTGATCTTAGACTGGGAATGAACT-CCGTATGCT
131 TACCACAACCCTCAATCCGGTCTGATCTTAGACTGGGAATGAA-TGCCGTATGCT
* *
35180124 TAGACATGGAATGAACTCC-CATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCAG
1 TAGACAAGGAATGAACTCCACATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGAGCTCAGCAG
* * * *
35180188 G-TCGGAGAGGTAGAATGCGCAAGCT-GAGGATCGACCCGA-TCCCCACTACGAGCTATC-GATC
66 GCT-AGAGAGGTAGAATGCGCAAGCTAG-GGA-CCAACCGAGTCCCCACTACGAGCT-GCAGATC
* *
35180249 TTGCTACCACATCCCTCAATCCGGTCTGATCTTAGACTGGGAATGAATGCCGTATGC
127 CTGCTACCACAACCCTCAATCCGGTCTGATCTTAGACTGGGAATGAATGCCGTATGC
35180306 ATAAGTCAAC
Statistics
Matches: 156, Mismatches: 21, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
182 3 0.02
183 129 0.83
184 24 0.15
ACGTcount: A:0.26, C:0.28, G:0.26, T:0.19
Consensus pattern (184 bp):
TAGACAAGGAATGAACTCCACATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGAGCTCAGCAG
GCTAGAGAGGTAGAATGCGCAAGCTAGGGACCAACCGAGTCCCCACTACGAGCTGCAGATCCTGC
TACCACAACCCTCAATCCGGTCTGATCTTAGACTGGGAATGAATGCCGTATGCT
Found at i:35180497 original size:159 final size:158
Alignment explanation
Indices: 35180121--35180527 Score: 430
Period size: 159 Copynumber: 2.6 Consensus size: 158
35180111 AACTCCGTAT
* *
35180121 GCTTAGACATGGAATGAACTCCC-ATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCGATGCCTAAGCCAACCCACGAAAAGAGTGTGCGGGCGCTCAG
* * * * *
35180185 CAGGTCGGAGAGGTAGAATGCGCAAGCTGAGGATCGACCCGATCCCCACTACGAGCTATCGATCT
66 CCGGCCGGAGAGGTAGAATGCGCAAGCAGAGGATCGACCCGATCCCCACTACGAGCTACCGATCC
* *
35180250 TGCTACCACATCCCTCAATCCGGTCTGA
131 CGCTACCACAGCCCTCAATCCGGTCTGA
* * * * * * * *
35180278 TCTTAGAC-TGGGAATGAA-TGCCGTATGCATAAGTCAACCCACGAAACGAGCGTTCGGGCGCTG
1 GCTTAGACAT-GGAATGAACTCCCG-ATGCCTAAGCCAACCCACGAAAAGAGTGTGCGGGCGCTC
* * * * * * * *
35180341 AGCCGGCCAGAGAGGCATAATGCGCAAGCCAG-GGATCGGCCCGATCCCCCTCTGCGTGCTGCCG
64 AGCCGGCCGGAGAGGTAGAATGCGCAAG-CAGAGGATCGACCCGAT-CCCCACTACGAGCTACCG
* * *
35180405 ATCCCGCTGCCACAGCCCTCAGTCCGG-CTGGG
127 ATCCCGCTACCACAGCCCTCAATCCGGTCT-GA
* *
35180437 GCTTAGACATGAAATGAACTCCCGATGCCTAAGCCAACCCACGAAATAG-GTGTGCAGGCGCTCA
1 GCTTAGACATGGAATGAACTCCCGATGCCTAAGCCAACCCACGAAA-AGAGTGTGCGGGCGCTCA
* *
35180501 GTCGACCGGAGAGGTAGAATGCGCAAG
65 GCCGGCCGGAGAGGTAGAATGCGCAAG
35180528 TCGAAGTCGG
Statistics
Matches: 202, Mismatches: 39, Indels: 16
0.79 0.15 0.06
Matches are distributed among these distances:
156 4 0.02
157 15 0.07
158 72 0.36
159 105 0.52
160 6 0.03
ACGTcount: A:0.25, C:0.30, G:0.28, T:0.16
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCCGATGCCTAAGCCAACCCACGAAAAGAGTGTGCGGGCGCTCAG
CCGGCCGGAGAGGTAGAATGCGCAAGCAGAGGATCGACCCGATCCCCACTACGAGCTACCGATCC
CGCTACCACAGCCCTCAATCCGGTCTGA
Found at i:35180698 original size:867 final size:870
Alignment explanation
Indices: 35178881--35180698 Score: 2115
Period size: 867 Copynumber: 2.1 Consensus size: 870
35178871 TCTGATCTTC
* * * *
35178881 GACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAATGAGCGTGCTGGCGTTCAACCGGC
1 GACTGGGGATGAACTCTGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTCAACCGAC
* * * *
35178946 CGAAGAGGCTGGCCGGAGAGGCATAATGCTTAAGTCGAGGATCAGCCCGGTCCCCCTCTACATGT
66 CG-AGAGGCTGACCGGAGAGGCATAATGCGTAAGTCGAGGATCAGCCCGATCCCCCTCTACATGC
* * ** *
35179011 TGCCGATCCCGCTGCCGGTCCTACTACCACAAACCTCGATTCGACTGGGGCCTAGACATGGAATG
130 TACCGATCCCGCTGCCAGTCCTACTACCACAAACCTCGATTCGACTGGGAACTAGACAAGGAATG
* * * *
35179076 AACTCCGTATGCCCAAGCCAACCCATGAAATGAGCGTGCGGGAGCTCAACCGACCGAAGAGGCAA
195 AACTCCATATGCCCAAGCCAACCCACGAAACGAGCGTGCGGGAGCTCAACCGACAGAAGAGGCAA
* * * * * *
35179141 AATGCATAAGTCGAGGATCGATCCGGTCCCCCCTACATGCTATCGATCCTGCTGCTGGTCCTACT
260 AATGCATAAGTAGAGGATCCAACCAGTCCCCCC-ACATG--ATCG---CTGCTGCAGATCCTACT
* * * *
35179206 TCTACAACCCTCGGTCTGGTCTAATCTTAGACTGGGAATGCACTCCATATGCTTAGACATGGAAT
319 GCCACAACCCTCGATCTGGTCTAATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAAT
* * * *
35179271 GAACTCCTATGCTTAAGCCAACCCACGAAACGAGCATGCGGGTGCTCAGCTGGTCGGAGAGGCAG
384 GAACTCCCATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGCAGGTCGGAGAGGCAG
** * * * * * *
35179336 AATGAGCAAGCTGGGATCGACCCAGTCCCCCTTTGTGCTGTTGATCGTGCTACCGCAACCCTTAG
449 AATGAGCAAGCTGGGATCGACCCAGTCCCCCTACGAGCTATCGATCGTGCTACCACAACCCTCAA
* * *
35179401 TCTGGTCCGATCTTAGACTGGGAATAAACTCCGACTGCCTACATCAACCCACAAAATGAGCGTGC
514 TCCGGTCCGATCTTAGACTGGGAATAAACTCCGACTGCATACATCAACCCACAAAACGAGCGTGC
* * * ** ** **
35179466 GGGATATAAGCAGGCCGGAGAGGCATAATGCGTAAGCTGGGGATCGATTCGAACCCTTTCTACAT
579 GGGAGATAAGCAGGCCAGAGAGGCATAATGCGCAAGCCAGGGATCGACCCGAACCCCCTCTACAT
* * * * * *
35179531 GCTGCCGATCCGCTGTCATAACCCTCGGTCTGGTCGGGGCTTAGACATGGAATGAACTCCCTATG
644 GCTGCCGATCCGCTGCCACAACCCTCAGTCCGGTCGGGGCTTAGACATGAAATGAACTCCCGATG
* * *
35179596 CCTAAGCCAACCCATGAAACAAGCGTGCAGGCGCTCAGTCGACTGGAAAGGCAGAATGCGTAAGC
709 CCTAAGCCAACCCACGAAACAAGCGTGCAGGCGCTCAGTCGACCGGAAAGGCAGAATGCGCAAGC
* * * * * * * *
35179661 CCGGGATTACGTCGGTCCCCTCTGCGTGCTATCGATCCTGTTGTCGCAACCCTCGATCCGATCCG
774 CCGGAAGTACGTCGGTCCCCCCTACGTGCTATCGATCCTGCTGCCACAACCCTCGATCCGATCCA
*
35179726 ATCTTAGACTGGGAATGAACTCTGTATGCTTA
839 ACCTTAGACTGGGAATGAACTCTGTATGCTTA
* ** * * *
35179758 GACTAGGGATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCACTCAACCGAT
1 GACTGGGGATGAACTCTGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTCAACCGA-
* * * * * * **
35179823 CGGAGAGGCTGATCTGAGAGGCATAATGCGTAAGTCGGGGATCAGCTCGATCCCTCTCTGTATGC
65 CCGAGAGGCTGACCGGAGAGGCATAATGCGTAAGTCGAGGATCAGCCCGATCCCCCTCTACATGC
* * *
35179888 TACCGATCCTGCTGCCAGTCCTACTGCCACAACCCTC-AGTTCGACTGGGAACTAGACAAGGAAT
130 TACCGATCCCGCTGCCAGTCCTACTACCACAAACCTCGA-TTCGACTGGGAACTAGACAAGGAAT
* * * *
35179952 GAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGAGCTCAGCCGGCTAG-AGAGGT
194 GAACTCCATATGCCCAAGCCAACCCACGAAACGAGCGTGCGGGAGCTCAACCGAC-AGAAGAGGC
* * *
35180016 AGAATGCGTAAGCTAG-GGA-CCAACCTAGT-CCCCC-C-TG-T-G-TGCTGCAGATCCTGCTGC
258 AAAATGCATAAG-TAGAGGATCCAACC-AGTCCCCCCACATGATCGCTGCTGCAGATCCTACTGC
* * * *
35180073 CGCAACCCTCGATTTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGA
321 CACAACCCTCGATCTGGTCTAATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGA
* *
35180138 ACTCCCATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCAGGTCGGAGAGGTAGAA
386 ACTCCCATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGCAGGTCGGAGAGGCAGAA
* * *
35180203 TGCGCAAGCTGAGGATCGACCC-GATCCCCACTACGAGCTATCGATCTTGCTACCACATCCCTCA
451 TGAGCAAGCTG-GGATCGACCCAG-TCCCC-CTACGAGCTATCGATCGTGCTACCACAACCCTCA
* * *
35180267 ATCCGGTCTGATCTTAGACTGGGAATGAA-TGCCGTA-TGCATA-AGTCAACCCACGAAACGAGC
513 ATCCGGTCCGATCTTAGACTGGGAATAAACT-CCG-ACTGCATACA-TCAACCCACAAAACGAGC
* * * * * * *
35180329 GTTCGGGCGCTGAGCCGGCCAGAGAGGCATAATGCGCAAGCCAGGGATCGGCCCGATCCCCCTCT
575 GTGCGGGAGATAAGCAGGCCAGAGAGGCATAATGCGCAAGCCAGGGATCGACCCGAACCCCCTCT
* * *
35180394 GCGTGCTGCCGATCCCGCTGCCACAGCCCTCAGTCCGG-CTGGGGCTTAGACATGAAATGAACTC
640 ACATGCTGCCGAT-CCGCTGCCACAACCCTCAGTCCGGTC-GGGGCTTAGACATGAAATGAACTC
* * * * *
35180458 CCGATGCCTAAGCCAACCCACGAAATAGGTGTGCAGGCGCTCAGTCGACCGGAGAGGTAGAATGC
703 CCGATGCCTAAGCCAACCCACGAAACAAGCGTGCAGGCGCTCAGTCGACCGGAAAGGCAGAATGC
* * * *
35180523 GCAAG-TC-GAAGT-CGGCTCGGTCCCCCCTATGTGCTGTCGATCCTGCTGCCACAACCCTCGGT
768 GCAAGCCCGGAAGTAC-G-TCGGTCCCCCCTACGTGCTATCGATCCTGCTGCCACAACCCTCGAT
* *
35180585 CTGGTCCAACCTTAGACTGGGAATGAACTCTGTATGCTTA
831 CCGATCCAACCTTAGACTGGGAATGAACTCTGTATGCTTA
* * * * * *
35180625 GACTGGGGATGAACTTTGTGTCCCTAAGTCAACCCATGAAATGAGTGTGCGGGTGCTCAATCGAC
1 GACTGGGGATGAACTCTGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTCAACCGAC
35180690 CAGAGAGGC
66 C-GAGAGGC
35180699 AGAATGCACA
Statistics
Matches: 786, Mismatches: 139, Indels: 42
0.81 0.14 0.04
Matches are distributed among these distances:
865 143 0.18
866 22 0.03
867 269 0.34
868 104 0.13
869 1 0.00
870 1 0.00
873 2 0.00
874 1 0.00
876 10 0.01
877 228 0.29
878 5 0.01
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.20
Consensus pattern (870 bp):
GACTGGGGATGAACTCTGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTCAACCGAC
CGAGAGGCTGACCGGAGAGGCATAATGCGTAAGTCGAGGATCAGCCCGATCCCCCTCTACATGCT
ACCGATCCCGCTGCCAGTCCTACTACCACAAACCTCGATTCGACTGGGAACTAGACAAGGAATGA
ACTCCATATGCCCAAGCCAACCCACGAAACGAGCGTGCGGGAGCTCAACCGACAGAAGAGGCAAA
ATGCATAAGTAGAGGATCCAACCAGTCCCCCCACATGATCGCTGCTGCAGATCCTACTGCCACAA
CCCTCGATCTGGTCTAATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCC
CATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGCAGGTCGGAGAGGCAGAATGAGC
AAGCTGGGATCGACCCAGTCCCCCTACGAGCTATCGATCGTGCTACCACAACCCTCAATCCGGTC
CGATCTTAGACTGGGAATAAACTCCGACTGCATACATCAACCCACAAAACGAGCGTGCGGGAGAT
AAGCAGGCCAGAGAGGCATAATGCGCAAGCCAGGGATCGACCCGAACCCCCTCTACATGCTGCCG
ATCCGCTGCCACAACCCTCAGTCCGGTCGGGGCTTAGACATGAAATGAACTCCCGATGCCTAAGC
CAACCCACGAAACAAGCGTGCAGGCGCTCAGTCGACCGGAAAGGCAGAATGCGCAAGCCCGGAAG
TACGTCGGTCCCCCCTACGTGCTATCGATCCTGCTGCCACAACCCTCGATCCGATCCAACCTTAG
ACTGGGAATGAACTCTGTATGCTTA
Found at i:35182732 original size:26 final size:26
Alignment explanation
Indices: 35182703--35182755 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35182693 CCGGTCTGAT
*
35182703 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCATATG
35182729 CTTAGACATGGAATGAACTCCATATG
1 CTTAGACATGGAATGAACTCCATATG
35182755 C
1 C
35182756 CTAAGACAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:35183230 original size:158 final size:160
Alignment explanation
Indices: 35182729--35183230 Score: 509
Period size: 158 Copynumber: 3.2 Consensus size: 160
35182719 ACTCCGTATG
* * * *
35182729 CTTAGACATGGAATGAACTCCATATGCCTAAGACAACACATGGAACGAGCGTACGGGTG--CTCA
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGACAACCCATGAAACGAGCGTACGGGCGCACTCA
*
35182792 GTCGACCGGAAAGGCAGAATGCGCAAGCTGGGGATCGACTCGATCCCCCCTGCGTGCTGTCGATC
66 GTCGACCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACTCGATCCCCCCTGCGTGCTGTCGATC
* * *
35182857 CTGCTGCCGCAACCCTCGATGCAGTCTGAT
131 CTACTGCCGCAACCCTCGATCCAGTCCGAT
* * * * *
35182887 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCTTACGGGCGCA--G
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGACAACCCATGAAACGAGCGTACGGGCGCACTC
* * * * * *
35182949 AGCCGATCGGAGAGGCATAATGCACAAGCTGGGGATCGACTCGATCCCCTTCTGCGTGCTGTCGG
65 AGTCGACCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACTCGATCCCC-CCTGCGTGCTGTCGA
** * * * ** **
35183014 TCCCCCTGCCACAACCCTCGGTCCGGTTGGGG
129 TCCTACTGCCGCAACCCTCGATCCAGTCCGAT
* * *
35183046 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACG-G-GTGCGTGG-GCACTC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGACAACCCATGAAACGAGCGTACG-GGCGCACTC
* ** * * * * * * * *
35183108 AGTCGGCCGGAGAGATAGAATGCGCAAGCCGAGGATTGGCTAGGTCCCCCCTACGTGCTGCCGAT
65 AGTCGACCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACTCGATCCCCCCTGCGTGCTGTCGAT
* *
35183173 CCTACTGTCGCAACCCTCGATTCAGTCCGAT
130 CCTACTGCCGCAACCCTCGATCCAGTCCGAT
35183204 CTTAGAC-TGGGAATGAACTCCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
35183231 TTAGACTGGG
Statistics
Matches: 273, Mismatches: 62, Indels: 18
0.77 0.18 0.05
Matches are distributed among these distances:
157 8 0.03
158 152 0.56
159 112 0.41
160 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.20
Consensus pattern (160 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGACAACCCATGAAACGAGCGTACGGGCGCACTCA
GTCGACCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACTCGATCCCCCCTGCGTGCTGTCGATC
CTACTGCCGCAACCCTCGATCCAGTCCGAT
Found at i:35183233 original size:26 final size:25
Alignment explanation
Indices: 35183204--35183282 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 25
35183194 TCAGTCCGAT
35183204 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGG-ATGAACTCCGTATG
35183230 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACT-GGGATGAACTCCGTATG
35183256 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACT-GGGATGAACTCCGTATG
35183282 C
1 C
35183283 CTAAGTCAAC
Statistics
Matches: 51, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
26 48 0.94
27 3 0.06
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (25 bp):
CTTAGACTGGGATGAACTCCGTATG
Found at i:35190767 original size:184 final size:183
Alignment explanation
Indices: 35190572--35190932 Score: 499
Period size: 184 Copynumber: 2.0 Consensus size: 183
35190562 TCTGACTGGG
** ** * *
35190572 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGTTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACAAGCGTGCGGGCGCTCAA
* * *
35190637 TCGGCCAGAGAGGCAGAATGTGCAAGTCGGGGATCAGCTCGATCCCCCCTACTTACTGCCGATCC
66 TCGGCCAGAGAGGCAGAATGCGCAAGTCGGGGATCAGCCCGAT-CCCCCTACGTACTGCCGATCC
*
35190702 TGCTGCCACAACCCTCGGTCC-GATCCGATCATAGACTGGGAATGAACTTCATAT
130 TGCTGCCACAACCCTCAGTCCAG-TCCGATCATAGACTGGGAATGAACTTCATAT
35190756 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACAAGCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACAAGCGTGCGGGCGCTCAA
* * * * * * * *
35190821 TCGGTCGGAGAGGTAGAATGCGCAAGTCGGGGATCGGCCCGGTCCCCCTGCGTGCTGTCGATCCT
66 TCGGCCAGAGAGGCAGAATGCGCAAGTCGGGGATCAGCCCGATCCCCCTACGTACTGCCGATCCT
* * * *
35190886 GCTGCCGCAACCGTCAGTCCAGTCTGATCTTAGACTGGGAATGAACT
131 GCTGCCACAACCCTCAGTCCAGTCCGATCATAGACTGGGAATGAACT
35190933 CCGTATGCCT
Statistics
Matches: 154, Mismatches: 22, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
183 58 0.38
184 96 0.62
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (183 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACAAGCGTGCGGGCGCTCAA
TCGGCCAGAGAGGCAGAATGCGCAAGTCGGGGATCAGCCCGATCCCCCTACGTACTGCCGATCCT
GCTGCCACAACCCTCAGTCCAGTCCGATCATAGACTGGGAATGAACTTCATAT
Found at i:35191021 original size:157 final size:157
Alignment explanation
Indices: 35190757--35191237 Score: 563
Period size: 159 Copynumber: 3.0 Consensus size: 157
35190747 ACTTCATATG
* * *
35190757 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACAAGCGTGCGGGCGCTCAAT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAAC
* * *
35190822 CGGTCGGAGAGGTAGAATGCGCAAGTCGGGGATCGGCCCGGTCCCCCTGCGTGCTGTCGATCCTG
66 CGGCCGGAGAGGTAAAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTGCGTGCTGTCGATCCTG
* *
35190887 CTGCCGCAACCGTCAGTCCAGTCTGAT
131 CTGCCGCAACCCTCGGTCCAGTCTGAT
* * * * *
35190914 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
* * * * * *
35190978 CCGACCGGAGAGGTATAATGCGCAAGCCGGAGATTGGCTCGGTCCCCCTCTGCGTGCTGCCGAT-
65 CCGGCCGGAGAGGTAAAATGCGCAAGCCGGGGATCGGCCCGGT-CCCC-CTGCGTGCTGTCGATC
* * * **
35191042 CTAGCTGCCACAACCCTCGGT-CTGGCTGGGG
128 CT-GCTGCCGCAACCCTCGGTCCAGTCT-GAT
* * * * *
35191073 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGTGTGCGGGCACTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAAC
* * * *
35191138 CGGCTGGAGAGGCAAAATGCGCAAGCCGGGGATCGACCCGGTTCCCCCTGCGTGCGGTCGATCCT
66 CGGCCGGAGAGGTAAAATGCGCAAGCCGGGGATCGGCCCGG-TCCCCCTGCGTGCTGTCGATCCT
* * *
35191203 GCTGCTGTAACCCTCGGTCCGGTCTGAT
130 GCTGCCGCAACCCTCGGTCCAGTCTGAT
35191231 CTTAGAC
1 CTTAGAC
35191238 TGGGAATCAA
Statistics
Matches: 265, Mismatches: 50, Indels: 17
0.80 0.15 0.05
Matches are distributed among these distances:
156 1 0.00
157 90 0.34
158 46 0.17
159 126 0.48
160 2 0.01
ACGTcount: A:0.21, C:0.30, G:0.30, T:0.19
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAAC
CGGCCGGAGAGGTAAAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTGCGTGCTGTCGATCCTG
CTGCCGCAACCCTCGGTCCAGTCTGAT
Found at i:35191281 original size:26 final size:26
Alignment explanation
Indices: 35191232--35191282 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
35191222 CGGTCTGATC
**
35191232 TTAGACTGGGAATCAACTTTGTATGG
1 TTAGACTGGGAATCAACTCCGTATGG
* *
35191258 TTAGACTGGGGATGAACTCCGTATG
1 TTAGACTGGGAATCAACTCCGTATG
35191283 CCTAAGTCAG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.25, C:0.14, G:0.29, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATCAACTCCGTATGG
Found at i:35191993 original size:26 final size:26
Alignment explanation
Indices: 35191955--35192005 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
35191945 GGCTCAAAAT
*
35191955 CTTAGACCGGGAATGAACTCCATATG
1 CTTAGACAGGGAATGAACTCCATATG
*
35191981 CTTAGACATGGAATGAACTCCATAT
1 CTTAGACAGGGAATGAACTCCATAT
35192006 ACCTAAGCCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.33, C:0.22, G:0.20, T:0.25
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCATATG
Found at i:35192334 original size:159 final size:157
Alignment explanation
Indices: 35191980--35192481 Score: 447
Period size: 159 Copynumber: 3.2 Consensus size: 157
35191970 AACTCCATAT
* *
35191980 GCTTAGACATGGAATGAACTCCATATACCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAA
* * ** * *
35192045 CTGGCCGGAGAGGCAAAATGTGCAAGCCGGGGATCAGCCCGGTCCCCCTACGTGCTATCGATCCT
66 CCGGCCGGAGAGGCAAAATGAGCAAGCCGGGGATCAAACCGGTCCCCCTACGTGCTACCGATCCC
* ** *
35192110 ACTATCGTAACCCTTGGTCTGGTCTGA
131 ACTACCACAACCCTCGGTCTGGTCTGA
* * * * * *
35192137 TCTTAGAC-TAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCA
* * * * * *
35192201 GCCAGCTC-GAGAGGCATAATGAGCAAGCCGGGGATCAAACTGGTCCCCCTTTGCGTGCTGCC-A
65 ACCGGC-CGGAGAGGCAAAATGAGCAAGCCGGGGATCAAACCGGTCCCCC--TACGTGCTACCGA
* * * *
35192264 GTCCCGCTGCCACAATCCTCGGTCTGGT-TGGG
127 -TCCCACTACCACAACCCTCGGTCTGGTCT-GA
* * *
35192296 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAA
* * * * * * * * *
35192361 CCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGATCCGATCCACCCTGCGTGTTGCCGATCC
66 CCGGCCGGAGAGGCAAAATGAGCAAGCCGGGGATCAAACCGGTCC-CCCTACGTGCTACCGATCC
** ** * ** *
35192426 TGCTGTCGCAACCCTCGGTCCAGTCCGA
130 CACTACCACAACCCTCGGTCTGGTCTGA
* *
35192454 TCTTAGAC-TGGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCATATGC
35192482 TTAGACTGGG
Statistics
Matches: 277, Mismatches: 56, Indels: 23
0.78 0.16 0.06
Matches are distributed among these distances:
156 1 0.00
157 94 0.34
158 60 0.22
159 118 0.43
160 4 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAA
CCGGCCGGAGAGGCAAAATGAGCAAGCCGGGGATCAAACCGGTCCCCCTACGTGCTACCGATCCC
ACTACCACAACCCTCGGTCTGGTCTGA
Found at i:35192484 original size:26 final size:26
Alignment explanation
Indices: 35192455--35192507 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
35192445 CCAGTCCGAT
35192455 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
35192481 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35192507 C
1 C
35192508 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35193413 original size:26 final size:26
Alignment explanation
Indices: 35193362--35193414 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
35193352 CTGGTTCAAT
*
35193362 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTACATATG
*
35193388 CTTAGACTAGGG-ATGAACTACGTATG
1 CTTAGACT-GGGAATGAACTACATATG
35193414 C
1 C
35193415 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACATATG
Found at i:35193930 original size:26 final size:26
Alignment explanation
Indices: 35193889--35193941 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35193879 CCAGTCTGAT
35193889 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
35193915 CTTAGACTAGGG-ATGAACTTCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
35193941 C
1 C
35193942 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35195118 original size:158 final size:156
Alignment explanation
Indices: 35194638--35195204 Score: 453
Period size: 158 Copynumber: 3.6 Consensus size: 156
35194628 ACTCCATATG
** * *
35194638 CTTAGACATA-GAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAA
1 CTTAGAC-TAGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAA
** * * * *
35194702 CCGGTCAAAGAAGCAGAACGCGCAAGTCGGGGATCGGCCCGGTCACCCTTGCATGT--TGTCAAT
65 CCGACCAGAGAGGCAGAATGCGCAAG-CGGGGATCGGCCCGGTC-CCC--CCATGTGCTGTCAAT
* *
35194765 CCTGCTGCCGTAACCCTCGGTCTGGTCCGAT
126 CCTGCTGCCGCAACCCTCGGTCTGGTCCAAT
* * * ** * * *
35194796 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAATGCACGAAACGAGCGTGCGGGCGCTGAGC
1 CTTAGACTAGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAAC
* * * * * **
35194861 C-AGCCGGAGA-GCATAATGCGCAAGCTGGGGATCGGCCCGATCCCCCTCTACGTGCTGCCGGTC
66 CGA-CCAGAGAGGCAGAATGCGCAAGC-GGGGATCGGCCCGGTCCCCC-C-ATGTGCTGTCAATC
* * * * **
35194924 CCGTTGCCACAACCCTCGGTCTGG-CTAGGG
127 CTGCTGCCGCAACCCTCGGTCTGGTCCA-AT
* * * * *
35194954 CATAGAC-ATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGTGTGCAGGCACTCAA
1 CTTAGACTA-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAA
*
35195018 CCGACCGGAGAGGCAGAATGCGCAAGCAGGGGATCGGCCCGGTCCCCCCAATGTGCTGTCAATCC
65 CCGACCAGAGAGGCAGAATGCGCAAGC-GGGGATCGGCCCGGTCCCCCC-ATGTGCTGTCAATCC
* ** **
35195083 TACTATCGCAACCCTCTAT-TCGGTCCAAT
128 TGCTGCCGCAACCCTCGGTCT-GGTCCAAT
* * * *
35195112 CTTAGACTAGGAATGAGCT--C--TG--TATG-CAACCCACGAAACGAGCGTGCAGACGCTCAGC
1 CTTAGACTAGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAAC
*
35195170 CGACCAGAGAGGCAGGATGCGCAAGCCGGGGATCG
66 CGACCAGAGAGGCAGAATGCGCAAG-CGGGGATCG
35195205 AACGGTGGTA
Statistics
Matches: 323, Mismatches: 71, Indels: 37
0.75 0.16 0.09
Matches are distributed among these distances:
151 57 0.18
152 4 0.01
154 2 0.01
155 1 0.00
156 8 0.02
157 30 0.09
158 184 0.57
159 37 0.11
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.17
Consensus pattern (156 bp):
CTTAGACTAGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAAC
CGACCAGAGAGGCAGAATGCGCAAGCGGGGATCGGCCCGGTCCCCCCATGTGCTGTCAATCCTGC
TGCCGCAACCCTCGGTCTGGTCCAAT
Found at i:35195735 original size:26 final size:26
Alignment explanation
Indices: 35195697--35195749 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
35195687 GGCTCAAACT
35195697 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35195723 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
35195749 C
1 C
35195750 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Done.