Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 388 of 402
Found at i:35196079 original size:26 final size:26
Alignment explanation
Indices: 35196038--35196090 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
35196028 CCAGTCCGAT
*
35196038 CTTAGACTGAGAATGAACTCTGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
* *
35196064 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
35196090 C
1 C
35196091 CTGAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:35196272 original size:26 final size:26
Alignment explanation
Indices: 35196234--35196286 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
35196224 CCGATCCGAT
35196234 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
35196260 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCTGTATG
35196286 C
1 C
35196287 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:35196776 original size:26 final size:26
Alignment explanation
Indices: 35196725--35196777 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
35196715 CCGGTTCGAT
*
35196725 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTACATATG
*
35196751 CTTAGACTAGGG-ATGAACTACGTATG
1 CTTAGACT-GGGAATGAACTACATATG
35196777 C
1 C
35196778 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACATATG
Found at i:35197150 original size:181 final size:183
Alignment explanation
Indices: 35196935--35197294 Score: 480
Period size: 181 Copynumber: 2.0 Consensus size: 183
35196925 CCGGTTGGGG
*
35196935 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACG-A-G-G-ATATGGGCACT
1 CTTAGACATAGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAACGTGCA-A-GGG--CT
* *
35196996 CAGCCAACCAGAGAGGCAGAATGCACAAGCAGGGGATCGGCCCAGTCCCCCCTGCGTGCTG-G-T
62 CAACCAACCAGAGAGGCAGAATGCACAAGCAGGGGATCGGCCCAGTCCCCCCTACGTGCTGTGAT
* * * *
35197059 CCTACTATCGCAACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATC
127 CCTACTACCGCAACCCTCGGTCCGGTCCGATCTTAAACTGGGAATGAACTCCGTATC
* * *
35197116 CTTAGACATAGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAACGTGCAAGTGCTCAAC
1 CTTAGACATAGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAACGTGCAAGGGCTCAAC
** * * *
35197181 CGGCCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCAGTCCCCCCTACGTGCTGTTGATCCT
66 CAACCAGAGAGGCAGAATGCACAAGCAGGGGATCGGCCCAGTCCCCCCTACGTGCTG-TGATCCT
* *
35197246 GCTACCGTAACCCTCGGTCCGGTCCGATCTTAAACTGGGAATGAACTCC
130 ACTACCGCAACCCTCGGTCCGGTCCGATCTTAAACTGGGAATGAACTCC
35197295 ATATGCCTAA
Statistics
Matches: 155, Mismatches: 17, Indels: 11
0.85 0.09 0.06
Matches are distributed among these distances:
181 100 0.65
182 1 0.01
183 4 0.03
184 49 0.32
185 1 0.01
ACGTcount: A:0.26, C:0.30, G:0.25, T:0.19
Consensus pattern (183 bp):
CTTAGACATAGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAACGTGCAAGGGCTCAAC
CAACCAGAGAGGCAGAATGCACAAGCAGGGGATCGGCCCAGTCCCCCCTACGTGCTGTGATCCTA
CTACCGCAACCCTCGGTCCGGTCCGATCTTAAACTGGGAATGAACTCCGTATC
Found at i:35197450 original size:159 final size:158
Alignment explanation
Indices: 35197116--35197474 Score: 364
Period size: 158 Copynumber: 2.3 Consensus size: 158
35197106 ACTCCGTATC
* * * *
35197116 CTTAGACATAGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAACGTGCAAGTGCTCAAC
1 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAACCTGCAAGTGCTCAAC
* * * * * *
35197181 CGGCCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCAGTCCCCCCTACGTGCTGTTGATCCT
66 CGACCGGAAAGGCAGAATGCACAAGCCGGGGATCAGCCCAGTCCCCCCTACGTGCTGCTGATCCT
** *
35197246 GCTACCGTAACCCTCGGTCCGGTCCGAT
131 GCTACCACAACCCTCGGTCCGGTCCGAG
* * * * * * **
35197274 CTTAAAC-TGGGAATGAACTCCATATGCCTAAGTCAGCCCATGAAATGAGCCTGCGGGTGCT-AT
1 CTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAACCTGCAAGTGCTCA-
* * * * * *
35197337 ACCGATCGGAAAGGCATAATGCATAAGCCGGGGATCAGCCCGGTCCGCCTCTACGTGTTGCTGAT
64 ACCGACCGGAAAGGCAGAATGCACAAGCCGGGGATCAGCCCAGTCC-CCCCTACGTGCTGCTGAT
* * * *
35197402 CCTGTTGCCACAACCCTCGGTCC-GTCTGGGG
128 CCTGCTACCACAACCCTCGGTCCGGTC-CGAG
* *
35197433 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACACACG
1 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACG
35197475 CAGGGGGGAT
Statistics
Matches: 159, Mismatches: 37, Indels: 9
0.78 0.18 0.04
Matches are distributed among these distances:
157 2 0.01
158 87 0.55
159 69 0.43
160 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.25, T:0.20
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAACCTGCAAGTGCTCAAC
CGACCGGAAAGGCAGAATGCACAAGCCGGGGATCAGCCCAGTCCCCCCTACGTGCTGCTGATCCT
GCTACCACAACCCTCGGTCCGGTCCGAG
Found at i:35197593 original size:26 final size:26
Alignment explanation
Indices: 35197563--35197615 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
35197553 GTTGGCCTAG
35197563 GCATACAAAGTTCATTCC-ATGTCTAA
1 GCATACAAAGTTCATTCCTA-GTCTAA
***
35197589 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACAAAGTTCATTCCTAGTCTAA
35197615 G
1 G
35197616 ACCAGACTAG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.32
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCTAGTCTAA
Found at i:35197958 original size:26 final size:26
Alignment explanation
Indices: 35197928--35197980 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
35197918 GTTGACTTAG
35197928 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
35197954 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
35197980 G
1 G
35197981 ATCAAACTGC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:35198339 original size:159 final size:154
Alignment explanation
Indices: 35197954--35198455 Score: 506
Period size: 158 Copynumber: 3.2 Consensus size: 154
35197944 CCCAGTCTAA
* * * *
35197954 GCATACGGAGTTCATTCCCA-GTCTAAGATCAAACTGCACCGAGGGTTACGGTAGCAGGATCGGC
1 GCATACGGAGTTCATT-CCATGTCTAAGACCAACCAG-ACCGAGGGTT-CGGTAGCAGGATCGAC
* * *
35198018 AGCACGTAGGGGGGACTGGACCGATCCCCAGCTTGCGCATTCTGCCTCTCCTGCCGGCTGAGCGC
63 AGCACATAGGGGGGACAGG-CCGATCCCCAGCTTGCGCATTCTGCCTCTCC-GGCGGCTGAGCGC
* * *
35198083 CCGCACGCCCATTTCATGGGCTGGCTTAG
126 CCGCACGCTCATTTCGTGGGTTGGCTTAG
* * * * * * * *
35198112 GCATAGGGTGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAAGGTTCTGGTAACAGGACCGATA
1 GCATACGGAGTTCATTCCATGTCTAAG-ACCAACCAGACCGAGGGTTC-GGTAGCAGGATCGACA
* * *
35198177 GCAC-TCAGAGGGGGACCAGGCCGATCCCCAGCTTGCGCATTATGCCTCTTCGGTCGGCTCAGCG
64 GCACAT-AG-GGGGGA-CAGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGG-CGGCTGAGCG
* *
35198241 CCCGTACGCTCATTTCGTGGGTTGACTTAG
125 CCCGCACGCTCATTTCGTGGGTTGGCTTAG
* * * *
35198271 GCATACGGAGTTCATTGCCA-GTCTAAGAGCGAACCAGACTGAGGGTTGCGGCAGCATGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGA-CCAACCAGACCGAGGGTT-CGGTAGCAGGATCGAC
* * * ** * **
35198335 AGCACATAGGTGGGATCGGGTCGATCCCCAGCTTAAGCATTCTGCCTCTCCGGCAGGTTGAATGC
63 AGCACATAGGGGGGA-CAGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGC-GGCTGAGCGC
* *
35198400 CCGCACGCTCGTTTTGTGGGTTGGCTTAG
126 CCGCACGCTCATTTCGTGGGTTGGCTTAG
35198429 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
35198456 CATACGGAGT
Statistics
Matches: 281, Mismatches: 50, Indels: 26
0.79 0.14 0.07
Matches are distributed among these distances:
157 9 0.03
158 139 0.49
159 125 0.44
160 8 0.03
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (154 bp):
GCATACGGAGTTCATTCCATGTCTAAGACCAACCAGACCGAGGGTTCGGTAGCAGGATCGACAGC
ACATAGGGGGGACAGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGCGGCTGAGCGCCCGCA
CGCTCATTTCGTGGGTTGGCTTAG
Found at i:35198465 original size:26 final size:26
Alignment explanation
Indices: 35198429--35198481 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
35198419 GTTGGCTTAG
35198429 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
35198455 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
35198481 G
1 G
35198482 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:35199177 original size:26 final size:26
Alignment explanation
Indices: 35199148--35199200 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
35199138 GTTGACTTAG
*
35199148 GCATACGGAGTTTATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
35199174 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
35199200 G
1 G
35199201 ATTGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:35199477 original size:159 final size:157
Alignment explanation
Indices: 35199238--35199677 Score: 429
Period size: 159 Copynumber: 2.8 Consensus size: 157
35199228 TAGAATCGGT
* * * * *
35199238 AGCACGCAGGAGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGC
1 AGCACGCAGGGGGGATCGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTCCGATCGGCTAAGCGC
** * * *
35199303 CCGCATTTCCATTTCGTGGGTTGGCTTAGGCAAAGGGAGTTCATTCCATGTCTAAGCCCTAG-CC
66 CCGCA-CGCTATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCC-AGACC
* * * *
35199367 GGACTGAGGGTTGTGGTAGCGGGA-CTGGC
129 AGACTGAGGGTTGCGGTAGCAGGATC-GAC
* * * * *
35199396 AGCACGCAGAGGGGGATCGGGTCGATCACTGGCTTGCGCATTATGCCTCTTCGGTCGGCTCAGCG
1 AGCACGCAG-GGGGGATCGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTCCGATCGGCTAAGCG
* * * * * **
35199461 CCCGTACGCTAGTTTCGTGGGTTGACTTAGGCATACGAATTTCATTCCCA-GTGTAAGATCAGAC
65 CCCGCACGCTA-TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCAGAC
35199525 CAGACTGAGGGTTGCGGTAGCAGGATCGAC
128 CAGACTGAGGGTTGCGGTAGCAGGATCGAC
* ** * ** *
35199555 AGCACACAGGGGGGGA-CGAGGTCGATCCCTAACTTGCACATTCTGCCTCTCCGATCAACAAAGC
1 AGCACGCA-GGGGGGATCG-GGTCGATCCCTGGCTTGCGCATTCTGCCTCTCCGATCGGCTAAGC
* ** * *
35199619 ACTTGCACGCTCATTTCGTGGGTCGGGTTAGGCATACGGAGTTCATTCCATGTCTAAGC
64 GCCCGCACGCT-ATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
35199678 ATACGGGGTT
Statistics
Matches: 225, Mismatches: 48, Indels: 17
0.78 0.17 0.06
Matches are distributed among these distances:
158 18 0.08
159 201 0.89
160 6 0.03
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (157 bp):
AGCACGCAGGGGGGATCGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTCCGATCGGCTAAGCGC
CCGCACGCTATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAGACCAG
ACTGAGGGTTGCGGTAGCAGGATCGAC
Found at i:35199688 original size:26 final size:26
Alignment explanation
Indices: 35199650--35199702 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35199640 GTCGGGTTAG
35199650 GCATACGGAGTTCA-TTCCATGTCTAA
1 GCATACGGAGTTCATTTCCA-GTCTAA
*
35199676 GCATACGGGGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTTCCAGTCTAA
35199702 G
1 G
35199703 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTTCCAGTCTAA
Found at i:35200593 original size:26 final size:26
Alignment explanation
Indices: 35200563--35200615 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
35200553 GTTGACTTAG
35200563 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* * *
35200589 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
35200615 G
1 G
35200616 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:35201982 original size:159 final size:159
Alignment explanation
Indices: 35201597--35202127 Score: 544
Period size: 159 Copynumber: 3.3 Consensus size: 159
35201587 CCCAGTCTAA
* * * * * *
35201597 GCATACAGAGTTCATTCCCAGTATAAGATCAGACCGGACCGAGGATTACGGTAGCGAGATCGATA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTGCGGTAGCGAGATCAATA
* * * *
35201662 GCACGCA-AG-GCGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGCTAGTTGAGCG
66 GCACGCAGAGAG-GGACCGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTTCGGCCAGTTGAGCA
* *
35201725 CCCGTACGCCCGTTTCGTGGGTTGACTTAG
130 CCCGCACGCTCGTTTCGTGGGTTGACTTAG
** ** * * *
35201755 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-TCGGA-TCGAGGGTTGTGGCAGCGAGACCA
1 GCATACAGAGTTCATTCCCA-GTCTAAG-ATCAGATCGGACT-GAGGGTTGCGGTAGCGAGATCA
* * * * * *
35201817 GTAGCACGCAGAGAGGGACCGGGCCGATCCCCGGCTTGTGCATTATGCCTCTTCGACCAGCTCAA
63 ATAGCACGCAGAGAGGGACCGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTTCGGCCAGTTGAG
* *
35201882 CAACCGCATGCTCGTTTCGTGGGTTGACTTAG
128 CACCCGCACGCTCGTTTCGTGGGTTGACTTAG
35201914 GCATACAGAGTTCATTCCCAGTCTAAGATC-GATCCGGACTGAGGGTTGCGGTAGC-AGGATCAA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGAT-CGGACTGAGGGTTGCGGTAGCGA-GATCAA
* * * * * * *
35201977 CAGCACGTAG-GAGGGGACCGGGCTGATCCCTGGCTTATGCATTCTGCCAT-TCCGGTC-GATTG
64 TAGCACGCAGAGA-GGGACCGGGCCGATCCCCGGCTTGTGCATTCTGCC-TCTTCGGCCAG-TTG
*
35202039 AGCACCCGCACGCTCGTTTCGTGGGTT-AGCTTTG
126 AGCACCCGCACGCTCGTTTCGTGGGTTGA-CTTAG
* * * *
35202073 GCATACGGAGTTCATTCCTAGTCTAAGATCAGATCGGATTGAAGGTTGCGGTAGC
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTGCGGTAGC
35202128 AGGACGAGCA
Statistics
Matches: 304, Mismatches: 54, Indels: 29
0.79 0.14 0.07
Matches are distributed among these distances:
157 4 0.01
158 56 0.18
159 235 0.77
160 9 0.03
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.23
Consensus pattern (159 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTGCGGTAGCGAGATCAATA
GCACGCAGAGAGGGACCGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTTCGGCCAGTTGAGCAC
CCGCACGCTCGTTTCGTGGGTTGACTTAG
Found at i:35202456 original size:26 final size:26
Alignment explanation
Indices: 35202427--35202479 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
35202417 GTTGACTTAG
35202427 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
35202453 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
35202479 G
1 G
35202480 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:35203326 original size:26 final size:26
Alignment explanation
Indices: 35203296--35203348 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
35203286 GTTGACTTAG
35203296 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
35203322 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
35203348 G
1 G
35203349 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:35204150 original size:26 final size:26
Alignment explanation
Indices: 35204114--35204163 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
35204104 TGACTTAGCT
*
35204114 ATACAGAGTTCATCCCCAGTCTAACC
1 ATACAAAGTTCATCCCCAGTCTAACC
*
35204140 ATACAAAGTTCATTCCCAGTCTAA
1 ATACAAAGTTCATCCCCAGTCTAA
35204164 GATCGAACTG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.34, C:0.30, G:0.10, T:0.26
Consensus pattern (26 bp):
ATACAAAGTTCATCCCCAGTCTAACC
Found at i:35204466 original size:159 final size:159
Alignment explanation
Indices: 35204276--35204641 Score: 450
Period size: 159 Copynumber: 2.3 Consensus size: 159
35204266 CCCGTATGCC
*
35204276 CGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCTCCAG-TCGGACCAAGG
1 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCT-CAGATCGGACCAAGG
* * * *
35204340 GTTGTGGTAGCGA-GACCGGCAGCACGCAGAGGGGGACCGGGCCGATCCCCGACTTTCGCATTAT
65 GTTGTAGCAG-GAGGACCGACAGCACGCAGAGGGGGACCGGGCCGATCCCCGACTTGCGCATTAT
* *
35204404 GCCTCTCCGGCTAGCTCAGCACCCGCATGCT
129 GCCTCTCCGGCTAGCTCAGCACCCACACGCT
* * ** * * * **
35204435 TGTTTAGTGGGTTAACTTAGGCATACAGAGTTCATTCCCA-ATCTAAGATCAGATCGGACTGAGG
1 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCTCAGATCGGACCAAGG
* * * * * * * * *
35204499 GTTGTAGCAGTAGGATCGACAGCACGTAGGGGGGGATCGGGTCGGTCCCCGGCTTGCGCATTCTG
65 GTTGTAGCAGGAGGACCGACAGCACGCAGAGGGGGACCGGGCCGATCCCCGACTTGCGCATTATG
*
35204564 CCTCTCCGGCTAGCTCAGCGCCCACACGCT
130 CCTCTCCGGCTAGCTCAGCACCCACACGCT
35204594 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
1 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
35204642 ATATGGAGTT
Statistics
Matches: 170, Mismatches: 33, Indels: 8
0.81 0.16 0.04
Matches are distributed among these distances:
158 7 0.04
159 160 0.94
160 3 0.02
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.24
Consensus pattern (159 bp):
CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCTCAGATCGGACCAAGGG
TTGTAGCAGGAGGACCGACAGCACGCAGAGGGGGACCGGGCCGATCCCCGACTTGCGCATTATGC
CTCTCCGGCTAGCTCAGCACCCACACGCT
Found at i:35204650 original size:26 final size:26
Alignment explanation
Indices: 35204614--35204666 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35204604 GTTGGCTTAG
35204614 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
35204640 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
35204666 G
1 G
35204667 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:35205033 original size:26 final size:26
Alignment explanation
Indices: 35204981--35205033 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
35204971 GTTGACTTAG
*
35204981 GCATACGGAGTTCATCCCCAATTTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
35205007 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
35205033 G
1 G
35205034 ATCAGACAAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:35205065 original size:367 final size:354
Alignment explanation
Indices: 35204556--35205214 Score: 817
Period size: 367 Copynumber: 1.8 Consensus size: 354
35204546 CCCGGCTTGC
* * * *
35204556 GCATTCTGCCTCTCCGGCTAGCTCAGCGCCCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACG
1 GCATTATGCCTCTCCGGCGAGCTCAGCGCCCACACGCTCGTCTCGTGGGTTGACTTAGGCATACG
* * * ** **
35204621 GAGTTCATTCCATGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACTGGATTGAGGCT
66 GAGTTCATCCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACAAGACAGAGGCT
** * *
35204686 TGCGGTAGTAGGACCAGCAGCAGGATCGACAGCATGCAGGAGGGATCGGGCCAATCCCCGGCTTA
131 TGCGACAGTAGGACC-G-A-CA-G--C-AC-G--T-AAGG-GGGACCGGGCCAATCCCCGGCTTA
* * * *
35204751 CGCATTC-TGCCTCTCCGA-TCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCAT
184 CGCATTCAT-CCTCTCCGACT-GACTGAACGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCAT
* *
35204814 ATAGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGTAGTAGGACCAACAGTGG
247 -GAGAGTTCATTCCATGTCTAAGCCCCAGCAGGACCGAGGGTTGTGGTAGTAGGACCAACAGTGG
35204879 GATCGACAGCACGCAGAGGGAGACTGGGCTGATCCCTGGCTTAG
311 GATCGACAGCACGCAGAGGGAGACTGGGCTGATCCCTGGCTTAG
* * *
35204923 GCATTATGCCTCTCCGGCCGA-CTGAGCGCCCATACGCTCGTCTCGTGTGTTGACTTAGGCATAC
1 GCATTATGCCTCTCCGG-CGAGCTCAGCGCCCACACGCTCGTCTCGTGGGTTGACTTAGGCATAC
35204987 GGAGTTCATCCCCAAT-T-TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACAAGACAGAG
65 GGAGTTCAT-CCC-ATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACAAGACAGAG
* * **
35205050 AG-TTGCGACAGTAGGATCGACAGCACGTAAGGGGGACCGGGCCGATCCCCGGCTTGTGCATTCA
128 -GCTTGCGACAGTAGGACCGACAGCACGTAAGGGGGACCGGGCCAATCCCCGGCTTACGCATTCA
* * *
35205114 TTCTCTCCGACTGACTGAACGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATGGGAGTTCAT
192 TCCTCTCCGACTGACTGAACGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATGAGAGTTCAT
*
35205179 TCCATGTCTAAGCCCCAGCAGGATCGAGGGTTGTGG
257 TCCATGTCTAAGCCCCAGCAGGACCGAGGGTTGTGG
35205215 CAGCGGGACT
Statistics
Matches: 254, Mismatches: 32, Indels: 25
0.82 0.10 0.08
Matches are distributed among these distances:
354 42 0.17
355 73 0.29
356 5 0.02
357 1 0.00
359 1 0.00
360 2 0.01
361 1 0.00
363 1 0.00
364 2 0.01
365 1 0.00
366 1 0.00
367 116 0.46
368 6 0.02
369 2 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (354 bp):
GCATTATGCCTCTCCGGCGAGCTCAGCGCCCACACGCTCGTCTCGTGGGTTGACTTAGGCATACG
GAGTTCATCCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACAAGACAGAGGCT
TGCGACAGTAGGACCGACAGCACGTAAGGGGGACCGGGCCAATCCCCGGCTTACGCATTCATCCT
CTCCGACTGACTGAACGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATGAGAGTTCATTCCA
TGTCTAAGCCCCAGCAGGACCGAGGGTTGTGGTAGTAGGACCAACAGTGGGATCGACAGCACGCA
GAGGGAGACTGGGCTGATCCCTGGCTTAG
Found at i:35205295 original size:158 final size:160
Alignment explanation
Indices: 35205007--35205509 Score: 409
Period size: 160 Copynumber: 3.2 Consensus size: 160
35204997 CCCAATTTAA
* ** * * * * * *
35205007 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGA-CAAGACAGAGAGTTGCGACAGTAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGACCCCACCCAGACTGAGGGTTGCGGCAGCAAGATCGA
** * * ** * * *
35205070 CAGCACGTA-AGGGGGACCGGGCCGATCCCCGGCTTGTGCATTCAT-TCTCTCC-GACTGACTGA
65 CAGCACACAGAGGGGGACCGGACCGATCCCCAGCTTACGCATT-ATGCCTCTCCGGCCAG-CTGA
* *
35205132 ACGCCCGCACGCCCGTTTCATGGGTTGGCTTAG
128 ACGCCCGCACGCACGTTTCGTGGGTTGGCTTAG
* * * **
35205165 GCAT-GGGAGTTCATTCCATGTCTAAG-CCCCA-GCAGGA-TCGAGGGTTGTGGCAGCGGGA-CT
1 GCATACGGAGTTCATTCCATGTCTAAGACCCCACCCA-GACT-GAGGGTTGCGGCAGCAAGATC-
* * * * ** *
35205225 GGCAGCACGCAGAGGGGGACCGGGCCGATCCCC-GACTTGCGCATTATGCCTCTTTGGCCAGCTT
63 GACAGCACACAGAGGGGGACCGGACCGATCCCCAG-CTTACGCATTATGCCTCTCCGGCCAGCTG
* * * *
35205289 AGCGCCCGCACGCACGTTTTGTGGGTTGACTTAC
127 AACGCCCGCACGCACGTTTCGTGGGTTGGCTTAG
* * * ** *
35205323 GCATACGAAGTTCATTCCCA-ATCTAAGATCGGACCCAGACTGAGGGTTGCGGTAGCAAGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGACCCCACCCAGACTGAGGGTTGCGGCAGCAAGATCGA
* * *
35205387 CAGCACACAGGGGGGGACTGGACCGATCCCCAGCTTACGCATTCTGCCTCTCCGGCCAGCTGAAC
65 CAGCACACAGAGGGGGACCGGACCGATCCCCAGCTTACGCATTATGCCTCTCCGGCCAGCTGAAC
* * *
35205452 GCCCGCATGCTCGTTTCGTGGGTTTGCTTAG
130 GCCCGCACGCACGTTTCGTGGGTTGGCTTAG
*
35205483 GCATACCGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
35205510 TGTACGTAGT
Statistics
Matches: 271, Mismatches: 58, Indels: 30
0.75 0.16 0.08
Matches are distributed among these distances:
156 7 0.03
157 45 0.17
158 72 0.27
159 21 0.08
160 121 0.45
161 5 0.02
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.22
Consensus pattern (160 bp):
GCATACGGAGTTCATTCCATGTCTAAGACCCCACCCAGACTGAGGGTTGCGGCAGCAAGATCGAC
AGCACACAGAGGGGGACCGGACCGATCCCCAGCTTACGCATTATGCCTCTCCGGCCAGCTGAACG
CCCGCACGCACGTTTCGTGGGTTGGCTTAG
Found at i:35205780 original size:869 final size:871
Alignment explanation
Indices: 35204081--35206077 Score: 2398
Period size: 869 Copynumber: 2.3 Consensus size: 871
35204071 TCGGTTGAAT
* * * *
35204081 GCCCGCAA-GCTCATTTCGTGGGTTGACTTA-GCTATACAGAGTTCATCCCCAGTCTAACCATAC
1 GCCCG-AACGCTCATCTCATGGGTTGACTTAGGC-ATACAGAGTTCATCCCCAATCTAAGCATAC
** * * * ** ** * *
35204144 AAAGTTCATTCCCAGTCTAAGATC-GAACTGGATC-GAGGGTTGCGGTAACATGATCGATAGCAC
64 GGAGTTCATTCCCAGTCTAAGATCAGATC-AGA-CAGAGAGTTGCGACAGTAGGATCGACAGCAC
* * * * * * * * * * * **
35204207 GCAGGGGGGCCCGAGTCGATTCTCGGCTTGCGCATTCT-GCCTCTTCGGCCGGTTGAACGCCCGT
127 ACA-GGGGGACCGGGACGATCCCCAGCTTGCACATTCTAG-CTCTCCGACTGACTGAACGCCCGT
* *
35204271 ATGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCTCCAGTCGGACC
190 ATGCCCGTTTCATGGGTTGGCTTAGGCAT-GGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACC
* *
35204336 AAGGGTTGTGGTAGCGAGACCGGCAGCACGCAGAGGGGGACCGGGCCGATCCCCGACTTTCGCAT
254 AAGGGTTGTGGCAGCGAGACCGGCAGCACGCAGAGGGGGACCGGGCCGATCCCCGACTTGCGCAT
* * ** *
35204401 TATGCCTCTCCGGCTAGCTCAGCACCCGCATGCTTGTTTAGTGGGTTAACTTAGGCATACAGAGT
319 TATGCCTCTCCGGCCAGCTCAGCACCCGCACGCACGTTTAGTGGGTTAACTTACGCATACAGAGT
* * * * * **
35204466 TCATTCCCAATCTAAGATCAGATCGGACTGAGGGTTGTAGCAGTAGGATCGACAGCACGTAGGGG
384 TCATTCCCAATCTAAGATCAGACCAGACTGAGGGTTGCAGCAGCAAGATCGACAGCACACAGGGG
** * * * * *
35204531 GGGATCGGGTCGGTCCCCGGCTTGCGCATTCTGCCTCTCCGGCTAGCTCAGCGCCCACACGCTCG
449 GGGATCGGACCGATCCCCAGCTTACGCATTCTGCCTCTCCGGCCAGCTCAACGCCCACACGCTCG
* *
35204596 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATGGAGTTCATTCCCAG
514 TTTCGTGGGTTGGCTTAGGCATACCGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAG
**
35204661 TCTAAGATCGGACTGGATTGAGGCTTGCGGTAGTAGGACCAGCAGCAGGATCGACAGCATGCAGG
579 TCTAAGATCGGACTGGACCGAGGCTTGCGGTAGTAGGACCAGCAGCAGGATCGACAGCAT-CAGG
* * *
35204726 AGGGATCGGGCCAATCCCCGGCTTACGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTC
643 AGGGATCGGGCCAATCCCCGGCTTACGCATTCTACCTCTCCGATCGACTGAGCGCCCACACGCTC
*
35204791 ATTTCGTGGGTTGGCTTAGGCATATAGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGT
708 ATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGT
* * *
35204856 TGTGGTAGTAGGACCAACAGTGGGATCGACAGCACGCAGAGGGAGACTGGGCTGATCCCTGGCTT
773 TGTGGTAGCAGGACCAACAGTGGGATCGACAGCACGCAGAGGGAGACTAGGCTGATCCCCGGCTT
*
35204921 AG-GCATTATGCC-TC-TCCG-GCCGA-C-TGAGC
838 -GTGCATTATGCCTTCGGCCGCGCCGATCATGAGC
* * * * *
35204950 GCCC-ATACGCTCGTCTCGTGTGTTGACTTAGGCATACGGAGTTCATCCCCAATTTAAGCATACG
1 GCCCGA-ACGCTCATCTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAATCTAAGCATACG
35205014 GAGTTCATTCCCAGTCTAAGATCAGA-CAAGACAGAGAGTTGCGACAGTAGGATCGACAGCACGT
65 GAGTTCATTCCCAGTCTAAGATCAGATC-AGACAGAGAGTTGCGACAGTAGGATCGACAGCAC--
* * ** * *
35205078 A-AGGGGGACCGGGCCGATCCCCGGCTTGTGCATTC-ATTCTCTCCGACTGACTGAACGCCCGCA
127 ACAGGGGGACCGGGACGATCCCCAGCTTGCACATTCTA-GCTCTCCGACTGACTGAACGCCCGTA
* * *
35205141 CGCCCGTTTCATGGGTTGGCTTAGGCATGGGAGTTCATTCCATGTCTAAGCCCCAG-CAGGATCG
191 TGCCCGTTTCATGGGTTGGCTTAGGCATGGGAGTTCATTCCATGTCTAAGCCCCAGTC-GGACCA
* *
35205205 AGGGTTGTGGCAGCGGGACTGGCAGCACGCAGAGGGGGACCGGGCCGATCCCCGACTTGCGCATT
255 AGGGTTGTGGCAGCGAGACCGGCAGCACGCAGAGGGGGACCGGGCCGATCCCCGACTTGCGCATT
** * * * *
35205270 ATGCCTCTTTGGCCAGCTTAGCGCCCGCACGCACGTTTTGTGGGTTGACTTACGCATAC-GAAGT
320 ATGCCTCTCCGGCCAGCTCAGCACCCGCACGCACGTTTAGTGGGTTAACTTACGCATACAG-AGT
* * *
35205334 TCATTCCCAATCTAAGATCGGACCCAGACTGAGGGTTGCGGTAGCAAGATCGACAGCACACAGGG
384 TCATTCCCAATCTAAGATCAGA-CCAGACTGAGGGTTGCAGCAGCAAGATCGACAGCACACAGGG
* * *
35205399 GGGGA-CTGGACCGATCCCCAGCTTACGCATTCTGCCTCTCCGGCCAGCTGAACGCCCGCATGCT
448 GGGGATC-GGACCGATCCCCAGCTTACGCATTCTGCCTCTCCGGCCAGCTCAACGCCCACACGCT
* ** *
35205463 CGTTTCGTGGGTTTGCTTAGGCATACCGAGTTCATTCCATGTCTAAGTGTACGTAGTTCATTCCC
512 CGTTTCGTGGGTTGGCTTAGGCATACCGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCC
* * *
35205528 AGTCTAAGATCGGACTGGACCGAGGGTTGCGGTGGTAGGACTAGCAGCAGGATCGACAGTACAT-
577 AGTCTAAGATCGGACTGGACCGAGGCTTGCGGTAGTAGGACCAGCAGCAGGATCGACAG--CATC
* * * * *
35205592 AGGGGGGATCGGGTCGATCCCCGGCTTACGCATTCTACCTCTCTGA-CTGACTGAGTGCCCACAC
640 AGGAGGGATCGGGCCAATCCCCGGCTTACGCATTCTACCTCTCCGATC-GACTGAGCGCCCACAC
* * * * *
35205656 GCTCATTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCTAGCTGGATCGA
704 GCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGA
** * * *
35205721 GGGTTGTGGTAGCAGGACTGACAGTGGGATCTG-CAGCATGTAGAGGGGGACTAGGCTGATCCCC
769 GGGTTGTGGTAGCAGGACCAACAGTGGGATC-GACAGCACGCAGAGGGAGACTAGGCTGATCCCC
* *
35205785 GGCTTGTGCATTATGCCTTTTCGGCCGACCTCTCCGATCGATTGAGT
833 GGCTTGTGCATTATGCC--TTCGGCCG----CGCCGATC-A-TGAGC
* * *
35205832 GCCCGAATGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGG
1 GCCCGAACGCTCATCTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAATCTAAGCATACGG
* * * * * *
35205897 AGTTCATTCCTAGTCTAAGATCGGATCAGACCGAGGGTTGCGGCAGTAGGATCGACAGTACACAG
66 AGTTCATTCCCAGTCTAAGATCAGATCAGACAGAGAGTTGCGACAGTAGGATCGACAGCACACAG
* * **
35205962 GGGGATCGGGACGATCCCCAGCTTGCACATTCTAGCTCTCCGATTGACTGAGTGCCCGTATGCCC
131 GGGGACCGGGACGATCCCCAGCTTGCACATTCTAGCTCTCCGACTGACTGAACGCCCGTATGCCC
* *
35206027 ATTTCATGGGTTGGCTTAGGCACAGGGAGTTCATTCCATGTCTAAGCCCCA
196 GTTTCATGGGTTGGCTTAGGCA-TGGGAGTTCATTCCATGTCTAAGCCCCA
35206078 ATCGTCAGAG
Statistics
Matches: 957, Mismatches: 135, Indels: 59
0.83 0.12 0.05
Matches are distributed among these distances:
867 3 0.00
868 169 0.18
869 548 0.57
870 6 0.01
871 3 0.00
872 2 0.00
873 3 0.00
878 4 0.00
879 1 0.00
880 1 0.00
881 75 0.08
882 140 0.15
883 2 0.00
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (871 bp):
GCCCGAACGCTCATCTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAATCTAAGCATACGG
AGTTCATTCCCAGTCTAAGATCAGATCAGACAGAGAGTTGCGACAGTAGGATCGACAGCACACAG
GGGGACCGGGACGATCCCCAGCTTGCACATTCTAGCTCTCCGACTGACTGAACGCCCGTATGCCC
GTTTCATGGGTTGGCTTAGGCATGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCAAGGGTT
GTGGCAGCGAGACCGGCAGCACGCAGAGGGGGACCGGGCCGATCCCCGACTTGCGCATTATGCCT
CTCCGGCCAGCTCAGCACCCGCACGCACGTTTAGTGGGTTAACTTACGCATACAGAGTTCATTCC
CAATCTAAGATCAGACCAGACTGAGGGTTGCAGCAGCAAGATCGACAGCACACAGGGGGGGATCG
GACCGATCCCCAGCTTACGCATTCTGCCTCTCCGGCCAGCTCAACGCCCACACGCTCGTTTCGTG
GGTTGGCTTAGGCATACCGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
TCGGACTGGACCGAGGCTTGCGGTAGTAGGACCAGCAGCAGGATCGACAGCATCAGGAGGGATCG
GGCCAATCCCCGGCTTACGCATTCTACCTCTCCGATCGACTGAGCGCCCACACGCTCATTTCGTG
GGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGTAG
CAGGACCAACAGTGGGATCGACAGCACGCAGAGGGAGACTAGGCTGATCCCCGGCTTGTGCATTA
TGCCTTCGGCCGCGCCGATCATGAGC
Found at i:35205893 original size:26 final size:26
Alignment explanation
Indices: 35205863--35205915 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
35205853 GTTGACTTAG
35205863 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* * *
35205889 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
35205915 G
1 G
35205916 ATCGGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:35207580 original size:26 final size:26
Alignment explanation
Indices: 35207544--35207622 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
35207534 GTTGACTTAG
*
35207544 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
35207570 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
35207596 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
35207622 G
1 G
35207623 ATCAGATCGG
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:35208087 original size:26 final size:26
Alignment explanation
Indices: 35208051--35208103 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35208041 GTCGGCTCAG
35208051 GCATACGGAGTTAATT-CCATGTCTAA
1 GCATACGGAGTTAATTCCCA-GTCTAA
*
35208077 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
35208103 G
1 G
35208104 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAGTCTAA
Found at i:35208804 original size:26 final size:26
Alignment explanation
Indices: 35208774--35208826 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
35208764 GTTGACTTAG
35208774 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
*
35208800 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
35208826 G
1 G
35208827 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATATGGAGTTCATCCCCAGTCTAA
Found at i:35209146 original size:26 final size:26
Alignment explanation
Indices: 35209116--35209168 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
35209106 GTTGACTTAG
35209116 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* ** *
35209142 GCATATGGAGTTTTTTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
35209168 G
1 G
35209169 ATCCCCAATC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:35209351 original size:26 final size:26
Alignment explanation
Indices: 35209315--35209367 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
35209305 GTTGACTTAG
35209315 GCATACGGAGTTCA-TCCCCAGTCTAA
1 GCATACGGAGTTCATTCCCC-GTCTAA
35209341 GCATACGGAGTTCATTCCCCGTCTAA
1 GCATACGGAGTTCATTCCCCGTCTAA
35209367 G
1 G
35209368 ATCAGATCGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 21 0.81
27 5 0.19
ACGTcount: A:0.25, C:0.30, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCCGTCTAA
Found at i:35209814 original size:157 final size:157
Alignment explanation
Indices: 35209341--35209841 Score: 463
Period size: 159 Copynumber: 3.2 Consensus size: 157
35209331 CCCAGTCTAA
* ** * * * *
35209341 GCATACGGAGTTCATTCCCCGTCTAAGATCAGATC-GAACAGAGGGTTGCGACAGCAGGATCGAT
1 GCATACGAAGTTCATTCCATGTCTAAGATCAGACCAGACCA-AGGGTTGCGGCAGCAGGATCGAC
* *
35209405 AGCACGCAGGGGGGATCGGGCCAATCCC-CAGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCT
65 AGCACGCA-GGGGGATCGGGCCAATCCCTGA-CTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCG
* *
35209469 CCCACACGCCCATTTCGTGGGTTGGCTTAG
128 CCCGCACGCTCATTTCGTGGGTTGGCTTAG
* * * ** * * ** * * * *
35209499 GCATAGGGAGTTCATTCCATGTCTATGCCCCAGTCGA-ACTGACGGTTGTGGCAGCGGGACCGAC
1 GCATACGAAGTTCATTCCATGTCTAAG-ATCAGACCAGACCAAGGGTTGCGGCAGCAGGATCGAC
* * * * * * ** * * * *
35209563 AGCACGCAGAGGGGAACTGGGTCGATCCCTGGCTTGCGCATTATGCCTTTTTGGCCAGCTCAGTG
65 AGCACGCAG-GGGGATC-GGGCCAATCCCTGACTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCG
* * *
35209628 CTCGCACGCTCATTTTGTGGGTTGACTTAG
128 CCCGCACGCTCATTTCGTGGGTTGGCTTAG
* *
35209658 GCATACGAAGTTCATTCC-TAGTCTAAGATCAGACCAGACCAAGGGTTGCGGTAGCAGGATTGAC
1 GCATACGAAGTTCATTCCAT-GTCTAAGATCAGACCAGACCAAGGGTTGCGGCAGCAGGATCGAC
* * ** * *
35209722 AGCACACAGGAGGATCGGGCCAATCCCTGACTTATGCATTCTGCCTCTCCGATCGGTTGAGCGCC
65 AGCACGCAGGGGGATCGGGCCAATCCCTGACTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCC
*
35209787 CGCACGCTCATTTCGTAGGTTGGCTTAG
130 CGCACGCTCATTTCGTGGGTTGGCTTAG
35209815 GCATAC-AGAGTTCATTCCATGTCTAAG
1 GCATACGA-AGTTCATTCCATGTCTAAG
35209842 CATACGGAGT
Statistics
Matches: 260, Mismatches: 74, Indels: 19
0.74 0.21 0.05
Matches are distributed among these distances:
156 1 0.00
157 82 0.32
158 66 0.25
159 111 0.43
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.24
Consensus pattern (157 bp):
GCATACGAAGTTCATTCCATGTCTAAGATCAGACCAGACCAAGGGTTGCGGCAGCAGGATCGACA
GCACGCAGGGGGATCGGGCCAATCCCTGACTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCC
GCACGCTCATTTCGTGGGTTGGCTTAG
Found at i:35209851 original size:26 final size:26
Alignment explanation
Indices: 35209815--35209867 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35209805 GTTGGCTTAG
35209815 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
35209841 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
35209867 G
1 G
35209868 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:35209968 original size:183 final size:183
Alignment explanation
Indices: 35209658--35210379 Score: 622
Period size: 183 Copynumber: 4.0 Consensus size: 183
35209648 GTTGACTTAG
* * * * * ** *
35209658 GCATACGAAGTTCATTCCTAGTCTAAGATCAGACCAGACCAAGGGTTGCGGTAGCAGGATTGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGACAGC-GGATCGACA
* * * * ** *
35209723 GCACACA-GGAGGATCGGGCCAATCCCTGACTTATGCATTCTGCCTCTCCGATCGGTTGAGCGCC
65 GCACACAGGGGGGACCGAGCCAATCCCCGACTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCC
* * *
35209787 CGCACGCTCATTTCGTAGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
130 CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* * *
35209841 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGA-CGAGGGTTACGACAGTCGAATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGACAG-CGGATCGACA
* * *
35209905 GCACGCAGGGGGGATCGAGCCAATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCC
65 GCACACAGGGGGGACCGAGCCAATCCCCGACTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCC
*
35209970 CGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT-A
130 CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
** * ** * * *
35210023 GC---CCCAG-TCGGA-T-CGAGGGT-TGTG-GCAG-CAGGATC---GG-TA-G-C-G-GGATCG
1 GCATACGGAGTTC--ATTCCCA--GTCTAAGATCAGACCGGACCGAGGGTTACGACAGCGGATCG
* * * ** * * * * *
35210071 ATAGCACACAGAAGGGGACCGGGCTGATCCCCGACTTTCGCATTATGCCTCTCTGACCGACTGAG
62 ACAGCACACAG-GGGGGACCGAGCCAATCCCCGACTTGCGCATTCTGCCTCTCCGATCGGCTGAG
* * * *
35210136 CACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAAACGGAGTTCATCCCCA-GTCTAA
126 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAA
* * * * * *
35210194 GCATGCAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGTGGGTTGCGACAGTAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGACAG-CGGATCGACA
* * * * * * * * *
35210259 GCACGCAGGGGGGACCGAGCCGATCCCCGGCTTGCACATTTTACCTCTCTGGTCGGTTGAGCGCC
65 GCACACAGGGGGGACCGAGCCAATCCCCGACTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCC
* * * *
35210324 CGTACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCGATGTCTAA
130 CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
35210378 GC
1 GC
35210380 CCCAGCCGGA
Statistics
Matches: 429, Mismatches: 81, Indels: 57
0.76 0.14 0.10
Matches are distributed among these distances:
169 15 0.03
170 89 0.21
171 7 0.02
172 1 0.00
173 4 0.01
174 8 0.02
175 9 0.02
176 5 0.01
177 4 0.01
178 7 0.02
179 8 0.02
180 4 0.01
181 1 0.00
182 27 0.06
183 136 0.32
184 90 0.21
185 14 0.03
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.23
Consensus pattern (183 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGACAGCGGATCGACAG
CACACAGGGGGGACCGAGCCAATCCCCGACTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCC
GCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
Found at i:35210231 original size:353 final size:355
Alignment explanation
Indices: 35209744--35210404 Score: 936
Period size: 354 Copynumber: 1.9 Consensus size: 355
35209734 GATCGGGCCA
* * * ** *
35209744 ATCCCTGACTTATGCATTCTGCCTCTCCGATCGGTTGAGCGCCCGCACGCTCATTTCGTAGGTTG
1 ATCCCCGACTTATGCATTATGCCTCTCCGACCGACTGAGCACCCGCACGCTCATTTCGTAGGTTG
* * * * *
35209809 GCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
66 ACTTAGGCAAACAGAGTTCATCCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGA
* * *
35209874 CCGGA-CGAGGGTTACGACAGTCGAATCGATAGCACGCAGGGGGGATCGAGCCAATCCCCGACTT
131 CCGGACCGAGGGTTACGACAGTAGAATCGACAGCACGCAGGGGGGACCGAGCCAATCCCCGACTT
* * *
35209938 GCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATA
196 GCACATTCTACCTCTCCGGTCGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATA
*
35210003 CGGAGTTCATTCCATGTCT-AGCCCCAGTCGGA-TCGAGGGTTGTGGCAGCAGGATCGGTAGCGG
261 CGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACT-GAGGGTTGTGGCAGCAGGATCGGTAGCGG
35210066 GATCGATAGCACACAGAAGGGGACCGGGCTG
325 GATCGATAGCACACAGAAGGGGACCGGGCTG
* * *
35210097 ATCCCCGACTT-TCGCATTATGCCTCTCTGACCGACTGAGCACCCGCACGCTCGTTTCGTGGGTT
1 ATCCCCGACTTAT-GCATTATGCCTCTCCGACCGACTGAGCACCCGCACGCTCATTTCGTAGGTT
* *
35210161 GACTTAGGCAAACGGAGTTCATCCCCA-GTCTAAGCATGCAGAGTTCATTCCCAGTCTAAGATCA
65 GACTTAGGCAAACAGAGTTCAT-CCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCA
* * * * * *
35210225 GACCGGACCGTGGGTTGCGACAGTAGGATCGGCAGCACGCAGGGGGGACCGAGCCGATCCCCGGC
129 GACCGGACCGAGGGTTACGACAGTAGAATCGACAGCACGCAGGGGGGACCGAGCCAATCCCCGAC
* * * * *
35210290 TTGCACATTTTACCTCTCTGGTCGGTTGAGCGCCCGTACGCCCGTTTCGTGGGTTGGCTTAGGCA
194 TTGCACATTCTACCTCTCCGGTCGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCA
* *
35210355 TAGGGAGTTCATTCGATGTCTAAGCCCCAGCCGGACTGAGGGTTGTGGCA
259 TACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACTGAGGGTTGTGGCA
35210405 ACGGGACCGA
Statistics
Matches: 267, Mismatches: 36, Indels: 8
0.86 0.12 0.03
Matches are distributed among these distances:
352 1 0.00
353 113 0.42
354 127 0.48
355 25 0.09
356 1 0.00
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (355 bp):
ATCCCCGACTTATGCATTATGCCTCTCCGACCGACTGAGCACCCGCACGCTCATTTCGTAGGTTG
ACTTAGGCAAACAGAGTTCATCCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGA
CCGGACCGAGGGTTACGACAGTAGAATCGACAGCACGCAGGGGGGACCGAGCCAATCCCCGACTT
GCACATTCTACCTCTCCGGTCGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATA
CGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACTGAGGGTTGTGGCAGCAGGATCGGTAGCGGG
ATCGATAGCACACAGAAGGGGACCGGGCTG
Found at i:35210495 original size:159 final size:160
Alignment explanation
Indices: 35210279--35210698 Score: 406
Period size: 159 Copynumber: 2.6 Consensus size: 160
35210269 GGGACCGAGC
* * * * * *
35210279 CGATCCCCGGCTTGCACATTTTACCTC-TCTGGTCGGTTGAGCGCCCGTACGCCCGTTTCGTGGG
1 CGATCCCCGGCTTGCGCATTATGCCTCTTC-GGCCGGTTGAGCGCCCGCACGCTCGTTTCGTGGG
* * * * * * *
35210343 TTGGCTTAGGCATAGGGAGTTCATTCGATGTCTAAGCCCCAG-CCGGA-CTGAGGGTTGTGGCAA
65 TTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCACCAGACCAGATC-AAGGATTGCGGCAA
*
35210406 CGGGACCGACAGCATGG-AGA-GGGGGACCAGGT
129 CAGGACCGACAGCA-GGTA-ATGGGGGACCAGGT
* * * * *
35210438 CGATCCCCGACTTGCGCATTATGCCTCTTCGGCCGGTTCAGCGCCTGCACACTCGTTTCATGGGT
1 CGATCCCCGGCTTGCGCATTATGCCTCTTCGGCCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGT
* * * *
35210503 TGACTTAGGCATACAGG-GTTCATTCCCA-GTCTAAG-ATCAGACCAGATCAAGGATTGCGGTAG
66 TGGCTTAGGCATA-AGGAGTTCATT-CCATGTCTAAGCACCAGACCAGATCAAGGATTGCGGCAA
* * * *
35210565 TAGGATCGACAGCAGGTAATGGGGGATCGGGT
129 CAGGACCGACAGCAGGTAATGGGGGACCAGGT
* * * * **
35210597 CGATCCTCGGCTTGCGCATTCTGTCTCTCCGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGT
1 CGATCCCCGGCTTGCGCATTATGCCTCTTCGGCCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGT
** *
35210662 TGGCTTACACATACGGAGTTCATTCCATGTCTAAGCA
66 TGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCA
35210699 TACAGAGTTC
Statistics
Matches: 209, Mismatches: 42, Indels: 19
0.77 0.16 0.07
Matches are distributed among these distances:
158 11 0.05
159 190 0.91
160 8 0.04
ACGTcount: A:0.18, C:0.27, G:0.30, T:0.25
Consensus pattern (160 bp):
CGATCCCCGGCTTGCGCATTATGCCTCTTCGGCCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGT
TGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCACCAGACCAGATCAAGGATTGCGGCAACA
GGACCGACAGCAGGTAATGGGGGACCAGGT
Found at i:35210504 original size:853 final size:859
Alignment explanation
Indices: 35209278--35211591 Score: 2787
Period size: 869 Copynumber: 2.7 Consensus size: 859
35209268 CTTTGGTCGG
* * *
35209278 CTGAGCGCCCACACGTTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
1 CTGAGCACCCGCACGCTC-TTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
* * * * **
35209343 ATACGGAGTTCATTCCCCGTCTAAGATCAGATCGAACAGAGGGTTGCGACAGCAGGATCGATAGC
65 ATACAGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGACAGCAGGATCGGCAGC
* * * * * * *
35209408 ACGCAGGGGGGATCGGGCCAATCCCCAGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCTCCCA
130 ACGCAGGGGGGACCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGTTGAGCGCCCG
* * * *
35209473 CACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTATGCCCCAGTCGAAC
195 TACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGAC
* * * *
35209538 TGACGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGAACTGGGTCGATCCCTGGCTTGCGCA
260 TGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGAC-CGGTCGATCCCCGGCTTGCGCA
* * * * * *
35209603 TTATGCCTTTTTGGCCAGCTCAGTG-CTCGCACGCTCATTTTGTGGGTTGACTTAGGCATACGAA
324 TTATGCCTCTTCGGCCGGCTCAGCGCCT-GCACGCTCGTTTTATGGGTTGACTTAGGCATACGAA
* *
35209667 GTTCATTCCTAGTCTAAGATCAGACCAGACCAAGGGTTGCGGTAGCAGGATTGACAGCACACA-G
388 GTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGTAGTAGGATTGACAGCACACAGG
* * ** ** **
35209731 GAGGATCGGGCCAATCCCTGACTTATGCATTCTGCCTCTCCGATCGGTTGAGCGCCCGCACGCTC
453 GGGGATCGGGCC-ATCCCTGGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCGCCCGCACGCTC
* *
35209796 ATTTCGTAGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCA
517 GTTTCGTGGGTTGGCTTAGGCATAC-GAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCA
* * * * * *
35209861 GTCTAAGATCGGACCGGA-CGAGGG-TT-A-C-GA-CAGTCG-A-ATCGATAGCACG-CAGGGGG
581 GTCTAAGATCAGACCGGACCAAGGGTTTCAGCAGACCAGTAGTAGATCGAT-GAACGTAAGGAGG
* * ** *
35209917 GATCGAGCCAATCC-CCGACTTGCGCATTCTGCCTCTCCGGTC-GGCTGAGCGCCCGCACGCTCG
645 GATCGACCCAATCCTCCGA-TTACGCATTCTGCCTCTCC-CCCAAGCTGAGCGCCCGCACGCTCG
*
35209980 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT-AGCCCCAGTCGGATCGAGGGTT
708 TTTCATGGGTTGGCTTAAGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGATCGAGGGTT
* * *
35210044 GTGGCAGCAGGA-TCGGTAGCGGGATC-GATAGCACACAGAAGGGGACCGGGCTGATCCCCGACT
773 GTGACAGCAGGACT-GGCAGCGGGATCAG-CAGCACACAGAAGGGGACCGGGCTGATCCCCGACT
* * *
35210107 TTCGCATTATGCCTCTCTGACCGA
836 TACGCATTACGCCTCTCCGACCGA
*
35210131 CTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAAACGGAGTTCATCCCCAGTCTAAGC
1 CTGAGCACCCGCACGCTC-TTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
* * * *
35210196 ATGCAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGTGGGTTGCGACAGTAGGATCGGCAGC
65 ATACAGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGACAGCAGGATCGGCAGC
* * * *
35210261 ACGCAGGGGGGACCGAGCCGATCCCCGGCTTGCACATTTTACCTCTCTGGTCGGTTGAGCGCCCG
130 ACGCAGGGGGGACCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGTTGAGCGCCCG
* *
35210326 TACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCGATGTCTAAGCCCCAGCCGGAC
195 TACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGAC
* * * *
35210391 TGAGGGTTGTGGCAACGGGACCGACAGCATGGAGAGGGGGACCAGGTCGATCCCCGACTTGCGCA
260 TGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGACC-GGTCGATCCCCGGCTTGCGCA
* * * *
35210456 TTATGCCTCTTCGGCCGGTTCAGCGCCTGCACACTCGTTTCATGGGTTGACTTAGGCATAC-AGG
324 TTATGCCTCTTCGGCCGGCTCAGCGCCTGCACGCTCGTTTTATGGGTTGACTTAGGCATACGA-A
* * * *
35210520 GTTCATTCCCAGTCTAAGATCAGACCAGATCAAGGATTGCGGTAGTAGGATCGACAGCAGGTA-A
388 GTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGTAGTAGGATTGACAGCA--CACA
* * *
35210584 TGGGGGATCGGGTCGAT-CCTCGGCTTGCGCATTCTGTCTCTCCGGCCGACTGAGCGCCCGCACG
451 GGGGGGATCGGG-CCATCCCT-GGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCGCCCGCACG
** *
35210648 CTCGTTTCGTGGGTTGGCTTACACATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTC
514 CTCGTTTCGTGGGTTGGCTTAGGCATAC-GAGTTCATTCCATGTCTAAGCATACGGAGTTCATTC
* ** *
35210713 CCAGTCTAAGATTAGATTGGACCAAGGGTTTCGGCAGCAGGACCAGTAGTAGGATCGGTGAACGT
578 CCAGTCTAAGATCAGACCGGACCAAGGGTTT---CAGCA-GACCAGTAGTA-GATCGATGAACGT
* * * * * * *
35210778 AAGGAGGGATCGACCCGATCCTCGGATTATGTATTTTGCCTCTCCCCCAAGTTGAGCGCCTGCAC
638 AAGGAGGGATCGACCCAATCCTCCGATTACGCATTCTGCCTCTCCCCCAAGCTGAGCGCCCGCAC
35210843 GCTCGTTTCATGGGTTGGCTTAAGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGATCGA
703 GCTCGTTTCATGGGTTGGCTTAAGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGATCGA
* ** * * * **
35210908 GGGTTGTGATAGCAGGACTGGCAGCGGGATCAGCAGCACGTAGAGGGGGATCGGGTTGATCCTTG
768 GGGTTGTGACAGCAGGACTGGCAGCGGGATCAGCAGCACACAGAAGGGGACCGGGCTGATCCCCG
* * *
35210973 GCTTACGCATTACGCCTCTCCGGCCGG
833 ACTTACGCATTACGCCTCTCCGACCGA
* * * * * *
35211000 TTGAGCACCCGTACACTCATTCTGTGGGTTGACTTAGGCATACGGTGTTCTTCCCCAGTCTAAGC
1 CTGAGCACCCGCACGCTCTTTC-GTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
* * * * * *
35211065 ATACAGGGTTCATTCCTAGTCTAAGATCAGACCGAATCGAGGGTTGCCATAACAGGATCGGCAGC
65 ATACAGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGACAGCAGGATCGGCAGC
* * * * **
35211130 ACGTAAGGGGGACCGAGCTGATCCTCGGCTTGCGCATTCTGCCTCTCCAATCGGTTGAGCGCCCG
130 ACGCAGGGGGGACCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGTTGAGCGCCCG
*
35211195 TACGCCCATTTCGTCGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGAC
195 TACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGAC
* * * * * *
35211260 TGAGTGTTGTGGCAGCAGGACTGACAGCACGTAGAGGGGGACCGGGCTGATCCCCGGCTTGCACA
260 TGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGACCGGTC-GATCCCCGGCTTGCGCA
* * * * * * *
35211325 TTATGCCTCTTCGGTCGGCTCAACACCCGCATGCTCGTTTTATGGGTTGACTTATGCATACGGAG
324 TTATGCCTCTTCGGCCGGCTCAGCGCCTGCACGCTCGTTTTATGGGTTGACTTAGGCATACGAAG
* * * * * * *
35211390 TTCTTTCCCAATCTAAGAGCAGACCAGACCAAGGGTTGCAGCAGTAGGATTTACAGC-CGCAGGG
389 TTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGTAGTAGGATTGACAGCACACAGGG
* * ** ** * * * *
35211454 GGTGACCAGGCCGGCTTTGGCTTGCGCATTCTACCTCTCTGGCCAACTGAGCGCCCACACGCTCG
454 GG-GATCGGGCCATCCCTGGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCGCCCGCACGCTCG
* *
35211519 TTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCTTGTCTAAGCATATGGAGTTCATTCCCAG
518 TTTCGTGGGTTGGCTTAGGCATACG-AGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAG
35211584 TCTAAGAT
582 TCTAAGAT
35211592 TTTGAGCCAC
Statistics
Matches: 1236, Mismatches: 191, Indels: 54
0.83 0.13 0.04
Matches are distributed among these distances:
852 1 0.00
853 387 0.31
854 6 0.00
855 124 0.10
856 6 0.00
857 2 0.00
861 1 0.00
862 1 0.00
864 2 0.00
865 5 0.00
866 2 0.00
867 119 0.10
868 108 0.09
869 470 0.38
870 2 0.00
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (859 bp):
CTGAGCACCCGCACGCTCTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCA
TACAGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGACAGCAGGATCGGCAGCA
CGCAGGGGGGACCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGTTGAGCGCCCGT
ACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACT
GAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGACCGGTCGATCCCCGGCTTGCGCATT
ATGCCTCTTCGGCCGGCTCAGCGCCTGCACGCTCGTTTTATGGGTTGACTTAGGCATACGAAGTT
CATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGTAGTAGGATTGACAGCACACAGGGGG
GATCGGGCCATCCCTGGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCGCCCGCACGCTCGTTT
CGTGGGTTGGCTTAGGCATACGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTA
AGATCAGACCGGACCAAGGGTTTCAGCAGACCAGTAGTAGATCGATGAACGTAAGGAGGGATCGA
CCCAATCCTCCGATTACGCATTCTGCCTCTCCCCCAAGCTGAGCGCCCGCACGCTCGTTTCATGG
GTTGGCTTAAGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGATCGAGGGTTGTGACAGC
AGGACTGGCAGCGGGATCAGCAGCACACAGAAGGGGACCGGGCTGATCCCCGACTTACGCATTAC
GCCTCTCCGACCGA
Found at i:35210707 original size:26 final size:26
Alignment explanation
Indices: 35210671--35210722 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
35210661 TTGGCTTACA
*
35210671 CATACGGAGTTCATT-CCATGTCTAAG
1 CATACAGAGTTCATTCCCA-GTCTAAG
35210697 CATACAGAGTTCATTCCCAGTCTAAG
1 CATACAGAGTTCATTCCCAGTCTAAG
35210723 ATTAGATTGG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (26 bp):
CATACAGAGTTCATTCCCAGTCTAAG
Found at i:35211066 original size:26 final size:26
Alignment explanation
Indices: 35211037--35211089 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
35211027 GTTGACTTAG
35211037 GCATAC-GGTGTTC-TTCCCCAGTCTAA
1 GCATACAGG-GTTCATT-CCCAGTCTAA
*
35211063 GCATACAGGGTTCATTCCTAGTCTAA
1 GCATACAGGGTTCATTCCCAGTCTAA
35211089 G
1 G
35211090 ATCAGACCGA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.23, C:0.26, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACAGGGTTCATTCCCAGTCTAA
Found at i:35212281 original size:27 final size:27
Alignment explanation
Indices: 35212251--35212307 Score: 80
Period size: 26 Copynumber: 2.1 Consensus size: 27
35212241 TTCATGCGAT
* *
35212251 GTCTTAGGCATACGGAGTTTATCCCCA
1 GTCTTAAGCATACGGAGTTCATCCCCA
*
35212278 GTC-TAAGCATACGGAGTTCATTCCCA
1 GTCTTAAGCATACGGAGTTCATCCCCA
35212304 GTCT
1 GTCT
35212308 AAGATCAGAC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.23, C:0.26, G:0.21, T:0.30
Consensus pattern (27 bp):
GTCTTAAGCATACGGAGTTCATCCCCA
Found at i:35212287 original size:26 final size:26
Alignment explanation
Indices: 35212258--35212310 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
35212248 GATGTCTTAG
*
35212258 GCATACGGAGTTTATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
35212284 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
35212310 G
1 G
35212311 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:35212839 original size:26 final size:26
Alignment explanation
Indices: 35212809--35212861 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
35212799 GTTGACTTAG
*
35212809 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
35212835 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
35212861 G
1 G
35212862 ATCGGACTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:35212990 original size:354 final size:362
Alignment explanation
Indices: 35212389--35213042 Score: 861
Period size: 368 Copynumber: 1.8 Consensus size: 362
35212379 GTTACGCATC
* * * * *
35212389 TGCCTCTCCGACCGATTGAGCGCCCGCACGCTTGTTTCGTGGGTTGGCTTAGGCATATGGAGTTC
1 TGCCTCTCCGACCGATTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTC
* * * *
35212454 ATTCCATGTATAAGCATACGGAGTTTATTCCCAGTCTAAGATTGGACTAGACTGAGGGTTGCAGC
66 ATCCCATGTATAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACTAGACTGAGGGTTGCAGC
* * *
35212519 AGCAGGACCAGCAGCAGGATAGACAGAATGCAGGGGGGGATCAGCCCGATCCCCGACTTGTGCAT
131 AGCAGGACCAGCAGC---A-AGACACAA-GCA-GGGGGGATCAGCCCGATCCCAGACTTGCGCAT
35212584 TCTGCCTCTCCAGCCGACTGAGCGCCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGT
190 TCTGCCTCTCCAGCCGACTGAGCGCCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGT
35212649 TAATTCCATGTCTAAGCCCCAGTC-GAACCAAGGGTTGTGGTAGCAGGACCGACAACGGAATCTA
255 TAATTCCATGTCTAAGCCCCAGTCGGAA-CAAGGGTTGTGGTAGCAGGACCGACAACGGAATCTA
35212713 CAGCACGTAGAGGGGGACCGGGCTGATCGCTGACTTGTGCATTA
319 CAGCACGTAGAGGGGGACCGGGCTGATCGCTGACTTGTGCATTA
* * *
35212757 TGCCTCTCCGGCCGGTTGAGCACCCGCATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTC
1 TGCCTCTCCGACCGATTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTC
*
35212822 ATCCCCA-GTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACT-GAACTGAGGGTTGC-
66 AT-CCCATGTATAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACTAG-ACTGAGGGTTGCA
* * * *
35212884 GACAGCAGGATC-G-A-C-AG-C-CCA-CA-GGGGGACTGAG-CCGATCCCTAG-CTTGCGTATT
129 G-CAGCAGGACCAGCAGCAAGACACAAGCAGGGGGGA-TCAGCCCGATCCC-AGACTTGCGCATT
* * *
35212939 CTGCCTCTCC-GATCGACTGAGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGT
191 CTGCCTCTCCAG-CCGACTGAGCGCCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGT
* *
35213003 TCATTCCATGTCTAAGCTCCAGTCGGAACAAGGGTTGTGG
255 TAATTCCATGTCTAAGCCCCAGTCGGAACAAGGGTTGTGG
35213043 CAACGGGACC
Statistics
Matches: 254, Mismatches: 25, Indels: 28
0.83 0.08 0.09
Matches are distributed among these distances:
353 1 0.00
354 115 0.45
355 7 0.03
356 2 0.01
358 1 0.00
359 1 0.00
360 2 0.01
365 1 0.00
366 1 0.00
367 3 0.01
368 117 0.46
369 3 0.01
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (362 bp):
TGCCTCTCCGACCGATTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTC
ATCCCATGTATAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACTAGACTGAGGGTTGCAGC
AGCAGGACCAGCAGCAAGACACAAGCAGGGGGGATCAGCCCGATCCCAGACTTGCGCATTCTGCC
TCTCCAGCCGACTGAGCGCCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTAATTC
CATGTCTAAGCCCCAGTCGGAACAAGGGTTGTGGTAGCAGGACCGACAACGGAATCTACAGCACG
TAGAGGGGGACCGGGCTGATCGCTGACTTGTGCATTA
Found at i:35213123 original size:159 final size:158
Alignment explanation
Indices: 35212835--35213335 Score: 396
Period size: 159 Copynumber: 3.2 Consensus size: 158
35212825 CCCAGTCTAA
* * * * * * * *
35212835 GCATACAGAGTTCATTCCCA-GTCTAAGATCGGACTGAA-CTGAGGGTTGCGACAGCAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCGAATC-AAGGGTTGTGGCAACAGGACCGA
* * * * * * *
35212898 CAGC--CCACAGGGG-GACTGAGCCGATCCCTAGCTTGCGTATTCTGCCTCTCCGATCGACTGAG
64 CAGCAAGCA-AGGGGTGACCGGGCCGATCCCCAACTTGCGCATTCTGCCTCTTCGATCG-CTGAG
35212960 CGCCCGTACGCTCGTTTCGTGGGTTGGCTTAG
127 CGCCCGTACGCTCGTTTCGTGGGTTGGCTTAG
* * * * * *
35212992 GCATAGGGAGTTCATTCCATGTCTAAGCTCCAGTCGGAA-CAAGGGTTGTGGCAACGGGACCGGC
1 GCATACGGAGTTCATTCCATGTCTAAGAT-CAGACCGAATCAAGGGTTGTGGCAACAGGACCGAC
* ** * *
35213056 AGCACA-CATAGGGG-GACCGTGTTGATCCCCAACTTGCGCATTATGCCTCTTCGATCAGCTCAG
65 AGCA-AGCA-AGGGGTGACCGGGCCGATCCCCAACTTGCGCATTCTGCCTCTTCGATC-GCTGAG
** * *
35213119 CGCCCGTACATTCGATTT-GTGGGTTGACTTAT
127 CGCCCGTACGCTCG-TTTCGTGGGTTGGCTTAG
* ** * * ***
35213151 GCATACAGAGTTCATT-TGTAGTCTAAGATCAGACCGAATCGAGGGTTGTGGCAGCAGGATTTAC
1 GCATACGGAGTTCATTCCAT-GTCTAAGATCAGACCGAATCAAGGGTTGTGGCAACAGGACCGAC
* * * * * *
35213215 AGCAAGCAGGGGGTGTCCGGGCCGATCCCCGACTTACACATTCTGCCTCTTTTG-TCTGCTGAGC
65 AGCAAGCAAGGGGTGACCGGGCCGATCCCCAACTTGCGCATTCTGCCTC-TTCGATC-GCTGAGC
*
35213279 GCCCGTACGCTC-ATTCTGTGGGTTGGCTTAG
128 GCCCGTACGCTCGTTTC-GTGGGTTGGCTTAG
35213310 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
35213336 CCATACGGAG
Statistics
Matches: 267, Mismatches: 62, Indels: 28
0.75 0.17 0.08
Matches are distributed among these distances:
156 3 0.01
157 44 0.16
158 20 0.07
159 192 0.72
160 8 0.03
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.25
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACCGAATCAAGGGTTGTGGCAACAGGACCGACA
GCAAGCAAGGGGTGACCGGGCCGATCCCCAACTTGCGCATTCTGCCTCTTCGATCGCTGAGCGCC
CGTACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:35213340 original size:26 final size:26
Alignment explanation
Indices: 35213311--35213361 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
35213301 TTGGCTTAGG
35213311 CATACGGAGTTCATT-CCATGTCTAAC
1 CATACGGAGTTCATTCCCA-GTCTAAC
35213337 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
35213362 GATTTTGAGC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAC
Found at i:35214062 original size:25 final size:25
Alignment explanation
Indices: 35214028--35214075 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
35214018 GTTGACTTAG
35214028 GCATATGGAGTTCATCCCCGATCAA
1 GCATATGGAGTTCATCCCCGATCAA
*
35214053 GCATATGGAGTTCATTCCCGATC
1 GCATATGGAGTTCATCCCCGATC
35214076 TAAGATCGGA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (25 bp):
GCATATGGAGTTCATCCCCGATCAA
Found at i:35215527 original size:26 final size:26
Alignment explanation
Indices: 35215491--35215543 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
35215481 GTTGACTTAG
35215491 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
**
35215517 GCATACGGAGTTCATTGCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
35215543 G
1 G
35215544 ATTGAATCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:35215819 original size:159 final size:158
Alignment explanation
Indices: 35215517--35216211 Score: 544
Period size: 159 Copynumber: 4.3 Consensus size: 158
35215507 CCCAGTCTAA
* * ** * * *
35215517 GCATACGGAGTTCATTGCCAGTCTAAGA-TTGAATCAAACCGAGGGTTGCGACAGCAGGATCGAC
1 GCATAGGGAGTTCATTCCCAGTCTAAGACCAG-ATCAGACCGAGGGTTGCGGCAGCGGGATCGAC
* * * * * * **
35215581 AGCACGCAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTACCTCTCCGACCAGCTGAGTGC
65 AGCACGCAAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCTGGCTGAGTGC
* *
35215646 CCGCATGCCCGTTTCATGGGTTGGCTTAC
130 CCGCATGCTCGTTTCATGGGTTGGCTTAG
* * * * *
35215675 GCATAGGGAGTTCATT-TCATGTCTAAGCCCCAG-TCAGACTGAGGGTTGTGGCAGCGGGACCGA
1 GCATAGGGAGTTCATTCCCA-GTCTAAG-ACCAGATCAGACCGAGGGTTGCGGCAGCGGGATCGA
* ** * *
35215738 CAGCACGCGAAGGGGGATCGGGCCGATCCCCGGCTTGCACATTATGCCTCTTTGGCTGGCTCATT
64 CAGCACGC-AAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCTGGCTGAGT
* *
35215803 GCCCGCATGCTTGTTTCATGGGTTGACTTAG
128 GCCCGCATGCTCGTTTCATGGGTTGGCTTAG
* * *
35215834 GCATACGGG-GTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGATTGCGGCAG-GAGGATCGA
1 GCATA-GGGAGTTCATTCCCAGTCTAAGACCAGATCAGACCGAGGGTTGCGGCAGCG-GGATCGA
* *
35215897 CAGCACGCAAGGTGGGATCGGGCCAATCCTCGGCTTGCGCATTCA-GCCTCTCCGG-TCGGCTGA
64 CAGCACGCAAGG-GGGATCGGGCCGATCCCCGGCTTGCGCATT-ATGCCTCTCCGGCT-GGCTGA
* * *
35215960 GCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
126 GTGCCCGCATGCTCGTTTCATGGGTTGGCTTAG
* * * *** *
35215993 GCATACGAAGTTCATTCCTAGTCTAAGATTGGATCGGACCGAGGGTTGCAGCAGTAGGACCAGCA
1 GCATAGGGAGTTCATTCCCAGTCTAAGACCAGATCAGACCGAGGGTT---GC----GG--CAGC-
* * * * * * * * *
35216058 GTAGGATCGGCAGAACGTAAGGGGGGATCGAGCCGATCCCTGACTTACGCATTTTGCCTCTCCAG
56 G--GGATCGACAGCACGCAA-GGGGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGG
** ** ** *
35216123 CCAGCTGAGCACCCGCACACTCGTTTCGTGGGTTGGCTTAG
118 CTGGCTGAGTGCCCGCATGCTCGTTTCATGGGTTGGCTTAG
* * *
35216164 GCATACGGAGTTCATT-CCATGTCTAAGCCCCAG-TCAGACTGAGGGTTG
1 GCATAGGGAGTTCATTCCCA-GTCTAAG-ACCAGATCAGACCGAGGGTTG
35216212 TGGTAGCAGG
Statistics
Matches: 431, Mismatches: 77, Indels: 48
0.78 0.14 0.09
Matches are distributed among these distances:
157 2 0.00
158 64 0.15
159 226 0.52
160 7 0.02
162 2 0.00
166 2 0.00
168 4 0.01
170 3 0.01
171 118 0.27
172 3 0.01
ACGTcount: A:0.20, C:0.27, G:0.31, T:0.22
Consensus pattern (158 bp):
GCATAGGGAGTTCATTCCCAGTCTAAGACCAGATCAGACCGAGGGTTGCGGCAGCGGGATCGACA
GCACGCAAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCTGGCTGAGTGCC
CGCATGCTCGTTTCATGGGTTGGCTTAG
Found at i:35216178 original size:171 final size:169
Alignment explanation
Indices: 35215884--35216362 Score: 473
Period size: 171 Copynumber: 2.8 Consensus size: 169
35215874 GAGGATTGCG
* * * * * * * *
35215884 GCAGGAGGATCGACAGCACGCAAGGTGGGATCGGGCCAAT-CCTCGGCTTGCGCATTCAGCCTCT
1 GCAGCAGGATCGGCAGAACGTAAGGGGGGATCGGGCCGATCCCT-GGCTTACGCATTAAGCCTCT
* * *
35215948 CCGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCTA
65 CC-GCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCC-A
**** * *
35216013 GTCTAAG-ATTGGATCGGACCGAGGGTTGCAGCAGTAGGACCA
128 GTCTAAGCCCCAG-TCAGACCGAGGGTTGCAGCAGCAGGACCA
* * * **
35216055 GCAGTAGGATCGGCAGAACGTAAGGGGGGATCGAGCCGATCCCTGACTTACGCATTTTGCCTCTC
1 GCAGCAGGATCGGCAGAACGTAAGGGGGGATCGGGCCGATCCCTGGCTTACGCATTAAGCCTCTC
* *
35216120 CAGCCAGCTGAGCACCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATG
66 C-GCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCA-G
* ** *
35216185 TCTAAGCCCCAGTCAGACTGAGGGTTGTGGTAGCAGGACCA
129 TCTAAGCCCCAGTCAGACCGAGGGTTGCAGCAGCAGGACCA
* * * *
35216226 GCAGCGGGATCGGCA-ACACGT-AGAGGGGGACCGGGCTGATCCCCGGCTTACGCATTACA-CCT
1 GCAGCAGGATCGGCAGA-ACGTAAG-GGGGGATCGGGCCGATCCCTGGCTTACGCATTA-AGCCT
* * * * * * *
35216288 CTCCGACTGGTTGAGCTCCCGCACGCTCGTTTCATGGGTTGACTTAGTCATACGGAGTTCATCCC
63 CTCCG-CCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT-TC
35216353 CAGTCTAAGC
126 CAGTCTAAGC
35216363 ATACAGAGAT
Statistics
Matches: 255, Mismatches: 45, Indels: 16
0.81 0.14 0.05
Matches are distributed among these distances:
170 5 0.02
171 243 0.95
172 7 0.03
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (169 bp):
GCAGCAGGATCGGCAGAACGTAAGGGGGGATCGGGCCGATCCCTGGCTTACGCATTAAGCCTCTC
CGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAGTC
TAAGCCCCAGTCAGACCGAGGGTTGCAGCAGCAGGACCA
Found at i:35216366 original size:26 final size:26
Alignment explanation
Indices: 35216336--35216387 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
35216326 TTGACTTAGT
* *
35216336 CATACGGAGTTCATCCCCAGTCTAAG
1 CATACAGAGATCATCCCCAGTCTAAG
*
35216362 CATACAGAGATCATTCCCAGTCTAAG
1 CATACAGAGATCATCCCCAGTCTAAG
35216388 ATCAGACCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.29, G:0.17, T:0.23
Consensus pattern (26 bp):
CATACAGAGATCATCCCCAGTCTAAG
Found at i:35216874 original size:26 final size:26
Alignment explanation
Indices: 35216838--35216890 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
35216828 GTTGGCTTAG
**
35216838 GCATACGGAGTTCATTCCTTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
35216864 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
35216890 G
1 G
35216891 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:35217754 original size:26 final size:26
Alignment explanation
Indices: 35217718--35217770 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35217708 GTTGGCTTAG
35217718 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
35217744 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
35217770 G
1 G
35217771 ATTGGATAGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:35218113 original size:26 final size:26
Alignment explanation
Indices: 35218083--35218135 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
35218073 GTTGACTTAG
*
35218083 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
35218109 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
35218135 G
1 G
35218136 ATCGGACTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:35218610 original size:158 final size:158
Alignment explanation
Indices: 35218195--35218610 Score: 468
Period size: 158 Copynumber: 2.6 Consensus size: 158
35218185 AACCGAGCCA
* * * * **
35218195 ATCCCCGGCTTGCGCGTTCTGCCTCTCC-GACCGACTGAGCGCCTGTACGCCTGTTTC-GTGGGT
1 ATCCCCGACTTGCGCATTCTGCCTCTCCAG-CCGACTGAGCGCCCGCACG-CTCATTCTGTGGGT
** * * *
35218258 TGGCTTAGGCATACGGAGTTCA-TTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGTAGCG
64 TGGCTTAGGCATACGGAGTTCATTTCCA-GTCTAAGATCCAGCCGGACCGAGGGTTGAGGTAGCA
*
35218322 GGACCAGCAGCACGCAGAGGGGACCGTGCTG
128 GGACCAGCAGCACGCAGAGGGGACCGGGCTG
* * * * *
35218353 ATCCCCGACTTGCGCATTATGCCTCTTCAGTCGACTCAACGCCCGCACGCTCGATT-TGTGGGTT
1 ATCCCCGACTTGCGCATTCTGCCTCTCCAGCCGACTGAGCGCCCGCACGCTC-ATTCTGTGGGTT
* * * * *
35218417 GACTTATGCATACGGAGTTCATTCCCAGTCTAAGATCGA-CCGGATCGAGGGTTGAGGTAGCAGG
65 GGCTTAGGCATACGGAGTTCATTTCCAGTCTAAGATCCAGCCGGACCGAGGGTTGAGGTAGCAGG
** * *
35218481 ATTTA-CAGCACGCAGGGGGTGACTGGGCCT-
130 A-CCAGCAGCACGCAGAGGG-GACCGGG-CTG
* *
35218511 ATCCTCGACTTGCGCATTCTGCCTCTCCAGCCGGCTGAGCGCCCGCACGCTCATTCTGTGGGTTG
1 ATCCCCGACTTGCGCATTCTGCCTCTCCAGCCGACTGAGCGCCCGCACGCTCATTCTGTGGGTTG
35218576 GCTTAGGCATACGGAGTTCATTTCCAGTCTAAGAT
66 GCTTAGGCATACGGAGTTCATTTCCAGTCTAAGAT
35218611 TTTGAGCCAC
Statistics
Matches: 214, Mismatches: 36, Indels: 16
0.80 0.14 0.06
Matches are distributed among these distances:
157 40 0.19
158 167 0.78
159 7 0.03
ACGTcount: A:0.17, C:0.29, G:0.29, T:0.25
Consensus pattern (158 bp):
ATCCCCGACTTGCGCATTCTGCCTCTCCAGCCGACTGAGCGCCCGCACGCTCATTCTGTGGGTTG
GCTTAGGCATACGGAGTTCATTTCCAGTCTAAGATCCAGCCGGACCGAGGGTTGAGGTAGCAGGA
CCAGCAGCACGCAGAGGGGACCGGGCTG
Found at i:35219228 original size:25 final size:25
Alignment explanation
Indices: 35219194--35219241 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
35219184 GTTGACTTAG
35219194 GCATACGGAGTTCATCCCCAGTCAA
1 GCATACGGAGTTCATCCCCAGTCAA
* *
35219219 GCATATGGAGTTCATTCCCAGTC
1 GCATACGGAGTTCATCCCCAGTC
35219242 TAAGATCGGA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.25, C:0.29, G:0.21, T:0.25
Consensus pattern (25 bp):
GCATACGGAGTTCATCCCCAGTCAA
Found at i:35220921 original size:26 final size:26
Alignment explanation
Indices: 35220891--35220943 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
35220881 GTTGACTTAG
35220891 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
**
35220917 GCATACGGAGTTCATTGCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
35220943 G
1 G
35220944 ATTGAATCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:35221260 original size:158 final size:157
Alignment explanation
Indices: 35220956--35221249 Score: 378
Period size: 158 Copynumber: 1.9 Consensus size: 157
35220946 TGAATCAAAC
* * * * *
35220956 CGAGGGTTGTGAGAGTAGGATCGATAGCACGTAGGGGGGATCGGGCCGATCCCCGACTTACGCAT
1 CGAGGGTTGTGAGAGCAGGATCGACAGCACGTAAGGGGGACCGAGCCGATCCCCGACTTACGCAT
* *
35221021 TCTGCCTCTACAGCCCACTGAGTGCCCGCACGCCTGTTTCGTGGGTTGGCTTAGGCATAGGGAGT
66 TCTGCCTCTACAGCCCACTGAGTGCCCGCACGCCTGTTTCATGGGTTGGCTTAGGCATACGGAGT
35221086 TCATTCCATTTCTAAGCCCCACTGGAT
131 TCATTCCATTTCTAAGCCCCACTGGAT
* * * *
35221113 CGAGGGTTGTG-GCAGCAGGATCGGCAGCACGTAAAGGGGGACCGAGCTGATCCTCGGCTTACGC
1 CGAGGGTTGTGAG-AGCAGGATCGACAGCACGT-AAGGGGGACCGAGCCGATCCCCGACTTACGC
* **** *
35221177 ATTCTGCCTCT-CCGACTGGTTGAGTGCCTGCACG-CTCGTTTCATGGGTTGGCTTAGGCATACG
64 ATTCTGCCTCTACAG-CCCACTGAGTGCCCGCACGCCT-GTTTCATGGGTTGGCTTAGGCATACG
35221240 GAGTTCATTC
127 GAGTTCATTC
35221250 TATGTTTAAG
Statistics
Matches: 116, Mismatches: 17, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
156 1 0.01
157 31 0.27
158 84 0.72
ACGTcount: A:0.18, C:0.26, G:0.32, T:0.24
Consensus pattern (157 bp):
CGAGGGTTGTGAGAGCAGGATCGACAGCACGTAAGGGGGACCGAGCCGATCCCCGACTTACGCAT
TCTGCCTCTACAGCCCACTGAGTGCCCGCACGCCTGTTTCATGGGTTGGCTTAGGCATACGGAGT
TCATTCCATTTCTAAGCCCCACTGGAT
Found at i:35221285 original size:26 final size:26
Alignment explanation
Indices: 35221233--35221285 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35221223 GTTGGCTTAG
*
35221233 GCATACGGAGTTCATTCTATGTTTAA
1 GCATACGGAGTTCATTCTATGTCTAA
35221259 GCATACGGAGTTCATTCCTA-GTCTAA
1 GCATACGGAGTTCATT-CTATGTCTAA
35221285 G
1 G
35221286 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.21, T:0.34
Consensus pattern (26 bp):
GCATACGGAGTTCATTCTATGTCTAA
Found at i:35222344 original size:159 final size:159
Alignment explanation
Indices: 35222055--35222344 Score: 381
Period size: 159 Copynumber: 1.8 Consensus size: 159
35222045 GCATGCAGGT
*
35222055 GGGATCGGGCTGATCCCCGGCTTGTGCATTCTGCCTTTCCAACTGGCTAAGCGCCCGCACGCCCA
1 GGGATCGGGCAGATCCCCGGCTTGTGCATTCTGCCTTTCCAACTGGCTAAGCGCCCGCACGCCCA
* * * *
35222120 TTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACCAAGGGTT
66 TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGATGGACCAAGGGTT
35222185 GTGGCAGCGGGACTGGTAGCACGCAGAAG
131 GTGGCAGCGGGACTGGTAGCACGCAGAAG
* *** * *
35222214 GGGATCGGGCAGATCCTCGGCTTGTGCA-TCATGCCTCTTCGGTC-GGCTCAGCGCCCGCACGCT
1 GGGATCGGGCAGATCCCCGGCTTGTGCATTC-TGCCT-TTCCAACTGGCTAAGCGCCCGCACGCC
* * * *
35222277 CTTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGATCGGACCAAG
64 CATTTCATGGGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGAT-GGACCAAG
35222340 GGTTG
127 GGTTG
35222345 CATCAGAAAG
Statistics
Matches: 112, Mismatches: 15, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
158 6 0.05
159 99 0.88
160 7 0.06
ACGTcount: A:0.18, C:0.28, G:0.30, T:0.24
Consensus pattern (159 bp):
GGGATCGGGCAGATCCCCGGCTTGTGCATTCTGCCTTTCCAACTGGCTAAGCGCCCGCACGCCCA
TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGATGGACCAAGGGTT
GTGGCAGCGGGACTGGTAGCACGCAGAAG
Found at i:35222484 original size:26 final size:26
Alignment explanation
Indices: 35222455--35222507 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
35222445 GTTGGCTTAG
35222455 GCATACGGAGTTCATT-CCACGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
35222481 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
35222507 G
1 G
35222508 ATCAGACCGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:35222853 original size:158 final size:157
Alignment explanation
Indices: 35222631--35222918 Score: 332
Period size: 158 Copynumber: 1.8 Consensus size: 157
35222621 TGCGTACGTT
* * * **
35222631 CGTTTCGTGGGTTGGCTTAGGCATATGAAGTTCATTCCTTGTCTAAGTCCAAGCCGGATCGAGGG
1 CGTTTCGTGGGTTGACTTAGGCATAAGAAGTTAATTCCCAGTCTAAGTCCAAGCCGGATCGAGGG
** * * * *
35222696 TTGTGGCAGCGGGACCGACAGCACGTAAAGGGGATCGCGTTGATCCCCGGCTTGCGCATTATGCC
66 TTACGGCAACAGGACCGACAACACG-AAAGGGGATCGCGCTGATCCCCGGCTTGCGCATTATGCC
35222761 TCTCTGGCTGGCTCAACGCCCATACGCC
130 TCTCTGGCTGGCTCAACGCCCATACGCC
*
35222789 CGTTTCGTGGGTTGACTTAGGCATACAG-AGTTAATTCCCAGTCTAAGAT-C-AGACTGGA-CAG
1 CGTTTCGTGGGTTGACTTAGGCATA-AGAAGTTAATTCCCAGTCTAAG-TCCAAG-CCGGATC-G
* * * * * * *
35222850 AGGGTTACGGCAACAGGATCGACAACATGCAGGGGGATCGGGCTGATCCCCGGCTTGTGCATTCT
62 AGGGTTACGGCAACAGGACCGACAACACGAAAGGGGATCGCGCTGATCCCCGGCTTGCGCATTAT
35222915 GCCT
127 GCCT
35222919 TTCCGGTCGA
Statistics
Matches: 107, Mismatches: 19, Indels: 9
0.79 0.14 0.07
Matches are distributed among these distances:
157 37 0.35
158 68 0.64
159 2 0.02
ACGTcount: A:0.20, C:0.25, G:0.30, T:0.24
Consensus pattern (157 bp):
CGTTTCGTGGGTTGACTTAGGCATAAGAAGTTAATTCCCAGTCTAAGTCCAAGCCGGATCGAGGG
TTACGGCAACAGGACCGACAACACGAAAGGGGATCGCGCTGATCCCCGGCTTGCGCATTATGCCT
CTCTGGCTGGCTCAACGCCCATACGCC
Found at i:35223002 original size:511 final size:512
Alignment explanation
Indices: 35222120--35223189 Score: 1259
Period size: 511 Copynumber: 2.1 Consensus size: 512
35222110 CGCACGCCCA
* * *
35222120 TTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACCAAGGGTT
1 TTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCAAGCCGGACCAAGGGTT
* ** * * *
35222185 GTGGCAGCGGGACTGGTAGCACGCAGAAGGGGATCGGGCAGATCCTCGGCTTGTGCATCATGCCT
66 GTGGCAGCGGGACCGACAGCACGCAGAAGGGGATCGCGCAGATCCCCGGCTTGCGCATCATGCCT
* * * * * * *
35222250 CTTCGGTCGGCTCAGCGCCCGCACGCTCTTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCC
131 CTTCGGTCGGCTCAACGCCCACACGCCCGTTTCGTGGGTTGACTTAGGCATACAGAGTTAATTCC
* *
35222315 CAGTCTAAGATCAGATCGGACCAAGGGTTGCATCAGAAAGATCGACAATGCGTAGGGTGGACCGG
196 CAGTCTAAGATCAGATCGGACCAAGGGTTACAGCAGAAAGATCGACAATGCG-AGGGTGGACCGG
*
35222380 GTCGATCCCCGACTTACGCATTCTACCTCTCCGATCGACTGAGTTCCCGCACGCTAGTTTTATGA
260 GTCGATCCCCGACTTACGCATTCTACCTCTCCGATCGACTGAGTTCCCGCACGCTAGTTTCATGA
* **
35222445 GTTGGCTTAGGCATACGGAGTTCATTCCACGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
325 GTTGGCTTAGGCATACGGAGTTCATTCCACGTCTAACCATACGGAGTTCATT-CCAACCTAAGAT
* * * *
35222510 CAGACCGAACCGAGGGTTGC-GACAGTAGGACCAGTAGCAGGATCGACAGCACGTAGGGG-GGAC
389 CAGACCGAACCGAGGGTTGCAG-CAGCAGGACCAATAGCAGGATCGACAGCACATAGGGGCGAAC
* * * * * * * ** *
35222573 CGGGTCGATCCTC-GACTTGCGCATTCTACCTCTCCTACTGGTTGAGCATGCGTACGTTCG
453 CAGGCCGATCCCCAG-CTTGCACAGTCTACCTCTCCGACCGGTTGAGCACCCGCACGTTCG
* * * * * * *
35222633 TTTCGTGGGTTGGCTTAGGCATATGAAGTTCATTCCTTGTCTAAGTCCAAGCCGGATCGAGGGTT
1 TTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCAAGCCGGACCAAGGGTT
* ** *
35222698 GTGGCAGCGGGACCGACAGCACGTA-AAGGGGATCGCGTTGATCCCCGGCTTGCGCATTATGCCT
66 GTGGCAGCGGGACCGACAGCACGCAGAAGGGGATCGCGCAGATCCCCGGCTTGCGCATCATGCCT
*
35222762 C-TCTGG-CTGGCTCAACGCCCATACGCCCGTTTCGTGGGTTGACTTAGGCATACAGAGTTAATT
131 CTTC-GGTC-GGCTCAACGCCCACACGCCCGTTTCGTGGGTTGACTTAGGCATACAGAGTTAATT
* *
35222825 CCCAGTCTAAGATCAGA-CTGGA-CAGAGGGTTACGGCA-ACAGGATCGACAACATGC-AGGG-G
194 CCCAGTCTAAGATCAGATC-GGACCA-AGGGTTACAGCAGA-AAGATCGAC-A-ATGCGAGGGTG
* * ** * * * *
35222885 GATCGGG-CTGATCCCCGGCTTGTGCATTCTGCCTTTCCGGTCGACTGAGTGT-CCGCACGCTCG
254 GACCGGGTC-GATCCCCGACTTACGCATTCTACCTCTCCGATCGACTGAGT-TCCCGCACGCTAG
* * * *
35222948 TTTCGTG-GCTTGGCTTAGGCATATGGAGTTCATTCCATGTGTAACCATACGGAGTTCATTCCAA
317 TTTCATGAG-TTGGCTTAGGCATACGGAGTTCATTCCACGTCTAACCATACGGAGTTCATTCCAA
* * * * * * *
35223012 CCTAAGATCGGACCGAATCGAGGTTTGCAGTAGCGGGACCAATAGCAGGATCGACTGTACATAGG
381 CCTAAGATCAGACCGAACCGAGGGTTGCAGCAGCAGGACCAATAGCAGGATCGACAGCACATAGG
* *
35223077 GGCGAACCAGGCCGATCCCCAGCTTGCACAGTCTACCTCTCCGACCGGTTGAGCGCCCGCGCGTT
446 GGCGAACCAGGCCGATCCCCAGCTTGCACAGTCTACCTCTCCGACCGGTTGAGCACCCGCACGTT
35223142 CG
511 CG
* *
35223144 TTTTATGGGTTGACTTAGGCATAAGGAGTTCATTCCATGTCTAAGC
1 TTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGC
35223190 ATATAGAGTT
Statistics
Matches: 467, Mismatches: 77, Indels: 28
0.82 0.13 0.05
Matches are distributed among these distances:
510 59 0.13
511 200 0.43
512 126 0.27
513 78 0.17
514 4 0.01
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.25
Consensus pattern (512 bp):
TTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCAAGCCGGACCAAGGGTT
GTGGCAGCGGGACCGACAGCACGCAGAAGGGGATCGCGCAGATCCCCGGCTTGCGCATCATGCCT
CTTCGGTCGGCTCAACGCCCACACGCCCGTTTCGTGGGTTGACTTAGGCATACAGAGTTAATTCC
CAGTCTAAGATCAGATCGGACCAAGGGTTACAGCAGAAAGATCGACAATGCGAGGGTGGACCGGG
TCGATCCCCGACTTACGCATTCTACCTCTCCGATCGACTGAGTTCCCGCACGCTAGTTTCATGAG
TTGGCTTAGGCATACGGAGTTCATTCCACGTCTAACCATACGGAGTTCATTCCAACCTAAGATCA
GACCGAACCGAGGGTTGCAGCAGCAGGACCAATAGCAGGATCGACAGCACATAGGGGCGAACCAG
GCCGATCCCCAGCTTGCACAGTCTACCTCTCCGACCGGTTGAGCACCCGCACGTTCG
Found at i:35224046 original size:158 final size:157
Alignment explanation
Indices: 35223575--35224068 Score: 514
Period size: 159 Copynumber: 3.1 Consensus size: 157
35223565 TAAGCTTGTA
* *
35223575 GAGTTCATTCACA-GTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAGGATCGACAGCACGC
1 GAGTTCATTC-CATGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGC
* * * * * *
35223639 AGGGGGACAT-GGCCGACCCCCGGCTTGCACATTCTACCTCTCCGGCC-GACTGAGTGCCCGTAC
65 AGGGGG-CATCGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCTGGCCTG-CTGAGCGCCCGCAC
* * * *
35223702 GCCCGTTTCATGGGTTGGCTTAGGCATAGG
128 GCTCGTTTCGTGGGTTGACTTAGGCATACG
** * * ** * **
35223732 GAGTTCATTCCATGTCTAAGCCCCAG-CCAGACCGAGGGTTGTGGTAGTGGGTTCGGTAGCACGC
1 GAGTTCATTCCATGTCTAAG-ATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGC
* * * * * * *
35223796 AGAGGGGGATCAAGCCGATCCTCGGCTTGCGCATTATGCCTCTTTAG-CTGGCTTAGCGCCCGCA
65 AG-GGGGCATC-GGCCGATCCCCGGCTTGCGCATTCTGCCTCTCTGGCCT-GCTGAGCGCCCGCA
* *
35223860 CGCTCGTTTCGTGGGTTGACTTATGCATATG
127 CGCTCGTTTCGTGGGTTGACTTAGGCATACG
* * *
35223891 GAGTTCATTCCCA-GTCTAAGATTAGACCGGACCAAGGGTTGTGGCAGCAGGATCGACAGCACGT
1 GAGTTCATT-CCATGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGC
* * * *
35223955 AGGGGGCATCGGGTCGATCCCCGACTTGTGCATTCTGCCTCTCTGGCCTGCTGAGCGCTCGCACG
65 AGGGGGCATC-GGCCGATCCCCGGCTTGCGCATTCTGCCTCTCTGGCCTGCTGAGCGCCCGCACG
*
35224020 CTCGTTTCGTGGGTTGCCTTAGGCATACG
129 CTCGTTTCGTGGGTTGACTTAGGCATACG
*
35224049 CAGTTCATTCCATGTCTAAG
1 GAGTTCATTCCATGTCTAAG
35224069 CATACGGAGT
Statistics
Matches: 269, Mismatches: 57, Indels: 21
0.78 0.16 0.06
Matches are distributed among these distances:
156 2 0.01
157 53 0.20
158 99 0.37
159 111 0.41
160 4 0.01
ACGTcount: A:0.18, C:0.28, G:0.30, T:0.24
Consensus pattern (157 bp):
GAGTTCATTCCATGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCA
GGGGGCATCGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCTGGCCTGCTGAGCGCCCGCACGCT
CGTTTCGTGGGTTGACTTAGGCATACG
Found at i:35224071 original size:26 final size:26
Alignment explanation
Indices: 35224042--35224094 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35224032 GTTGCCTTAG
35224042 GCATACGCAGTTCATT-CCATGTCTAA
1 GCATACGCAGTTCATTCCCA-GTCTAA
*
35224068 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGCAGTTCATTCCCAGTCTAA
35224094 G
1 G
35224095 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGCAGTTCATTCCCAGTCTAA
Found at i:35224801 original size:26 final size:26
Alignment explanation
Indices: 35224765--35224817 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
35224755 GTTGACTTAG
*
35224765 GCATATGGAGTAT-ATCCCCAGTCTAA
1 GCATACGGAGT-TCATCCCCAGTCTAA
*
35224791 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
35224817 G
1 G
35224818 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:35226024 original size:26 final size:26
Alignment explanation
Indices: 35225988--35226040 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
35225978 GTTGACTTAG
35225988 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
35226014 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
35226040 G
1 G
35226041 ATCGAACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:35226513 original size:26 final size:26
Alignment explanation
Indices: 35226477--35226529 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35226467 GTTGGCTTAG
35226477 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
35226503 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
35226529 G
1 G
35226530 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:35227225 original size:26 final size:26
Alignment explanation
Indices: 35227196--35227248 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
35227186 GTTGACTTAG
*
35227196 GCATACGGAGCTCATTCCCAATCTAA
1 GCATACAGAGCTCATTCCCAATCTAA
* *
35227222 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGCTCATTCCCAATCTAA
35227248 G
1 G
35227249 ATCGAACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGCTCATTCCCAATCTAA
Found at i:35227529 original size:158 final size:158
Alignment explanation
Indices: 35227222--35228040 Score: 708
Period size: 158 Copynumber: 5.2 Consensus size: 158
35227212 CCCAATCTAA
* ** * * * * * * *
35227222 GCATACAGAGTTCATTCCCA-GTCTAAGATCGAACCGGACCGAGGGTTGCGGTAGCAGGATCGGC
1 GCATACGGAGTTCATT-CCATGTCTAAGCCCCAGCTGGACTGAGGGTTGTGGCAGCAGGATCGAC
* * * * * * * * * *
35227286 AGCACGCAAGGGGGACCAGGTCGATCCCCGGCTTGCGCATTCTTCCTCTCTG-GCTGACTGAGCA
65 AGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATACCTCTCCGATC-GGCTCAGCG
*
35227350 CCCGCACGCCCGTTTCATGGGTTGGCTTAG
129 CCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * *
35227380 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGC-GGACTGAAGGTTGTGGCAGCAGGACCGACA
1 GCATACGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACTGAGGGTTGTGGCAGCAGGATCGACA
* * * * * * * *
35227444 GCACGCAGAGGGGGACCGAGCCAATCCCTGGCTTGCGCGTTATGCATCTTCGACCGGCTCAGCGC
66 GCACGCAG-GGGGGACCGGGCCGATCCCCGGCTTGCGCATTATACCTCTCCGATCGGCTCAGCGC
* * * *
35227509 CCGTACGCTCATTTCGTGGGTTGACTTAG
130 CCGCACGCTCGTTTCATGGGTTGGCTTAG
** * **** * *
35227538 GCATACATATTTCATTCC-TAGTCTAAG-ATTGGACCGGACTGAGGGTGTTGCGGCAGCAGGATC
1 GCATACGGAGTTCATTCCAT-GTCTAAGCCCCAG-CTGGACTGA-GG-GTTGTGGCAGCAGGATC
* * * *
35227601 GATAG--CGCAGGGAGGGACC-GGCCGATCCCCAGCTTGCGCATTCTACCTCTCCGATCGGCTGA
62 GACAGCACGCAGGG-GGGACCGGGCCGATCCCCGGCTTGCGCATTATACCTCTCCGATCGGCTCA
* * *
35227663 GTGCCCACACG-TGTGTTTCATGGGTTGGCTTAG
126 GCGCCCGCACGCT-CGTTTCATGGGTTGGCTTAG
* *
35227696 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACCT-AGGGTTGTGGCAGCAGGATCGGC
1 GCATACGGAGTTCATTCCATGTCTAAGCCCCAGCTGGA-CTGAGGGTTGTGGCAGCAGGATCGAC
* * * * *
35227760 AGCATGTAGAGGGGGACCGGGCCGATCCCCTGCTTGCGCATTATGCCTCTCCGGTCGGCTCAGCG
65 AGCACGCAG-GGGGGACCGGGCCGATCCCCGGCTTGCGCATTATACCTCTCCGATCGGCTCAGCG
* *
35227825 CCCGCACGCTCGTTTCATGAGTTGACTTAG
129 CCCGCACGCTCGTTTCATGGGTTGGCTTAG
* ** * * * *
35227855 GCATATGGAGTTCATTCC-TAGTCTAAG-ATCGGACTGGATTGAGGGTTGTTGCAGCAGGATCAA
1 GCATACGGAGTTCATTCCAT-GTCTAAGCCCCAG-CTGGACTGAGGGTTGTGGCAGCAGGATCGA
* * * * * * * *
35227918 CAACATGCAGGGGGCACCGGGCTGATCCCCGGCTTGCACATTCTACCTCTCCGATTGGCTGAGCG
64 CAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATACCTCTCCGATCGGCTCAGCG
* *
35227983 CCCGCACGCTCGTTTCGTGGGTGGGCTTAG
129 CCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * *
35228013 GCGTACGAATTTCATTCCATGTCTAAGC
1 GCATACGGAGTTCATTCCATGTCTAAGC
35228041 ATACGGAGTT
Statistics
Matches: 524, Mismatches: 114, Indels: 45
0.77 0.17 0.07
Matches are distributed among these distances:
156 19 0.04
157 39 0.07
158 299 0.57
159 146 0.28
160 2 0.00
161 19 0.04
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACTGAGGGTTGTGGCAGCAGGATCGACA
GCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATACCTCTCCGATCGGCTCAGCGCC
CGCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:35227882 original size:317 final size:315
Alignment explanation
Indices: 35227222--35228040 Score: 972
Period size: 317 Copynumber: 2.6 Consensus size: 315
35227212 CCCAATCTAA
* * * * *
35227222 GCATACAGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGA-GG-GTTGCGGTAGCAGGATCGG
1 GCATACAGAGTTCATTCCTAGTCTAAGATCGGACCGGACTGAGGGTGTTGCGGCAGCAGGATCGA
* * * * * *
35227285 CAGCACGCAAGGGGGACCAGGTCGATCCCCGGCTTGCGCATTCTTCCTCTCTG-GCTGACTGAGC
66 CAG--CGCAGGGGGGACCAGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGATC-GGCTGAGC
* *
35227349 ACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGC
128 GCCCGCACG-TCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGC
35227414 GGACTGAAGGTTGTGGCAGCAGGACCGACAGCACGCAGAGGGGGACCGAGCCAATCCCTGGCTTG
192 GGACTGAAGGTTGTGGCAGCAGGACCGACAGCACGCAGAGGGGGACCGAGCCAATCCCTGGCTTG
* * * * *
35227479 CGCGTTATGCATCTTCGACCGGCTCAGCGCCCGTACGCTCATTTCGTGGGTTGACTTAG
257 CGCATTATGCATCTCCGACCGGCTCAGCGCCCGCACGCTCATTTCATGAGTTGACTTAG
* * *
35227538 GCATACATATTTCATTCCTAGTCTAAGATTGGACCGGACTGAGGGTGTTGCGGCAGCAGGATCGA
1 GCATACAGAGTTCATTCCTAGTCTAAGATCGGACCGGACTGAGGGTGTTGCGGCAGCAGGATCGA
* * *
35227603 TAGCGCAGGGAGGGACC-GGCCGATCCCCAGCTTGCGCATTCTACCTCTCCGATCGGCTGAGTGC
66 CAGCGCAGGG-GGGACCAGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGATCGGCTGAGCGC
* *
35227667 CCACACGTGTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTG
130 CCGCACGT-CGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGC-G
* * * * * * *
35227732 GACCT-AGGGTTGTGGCAGCAGGATCGGCAGCATGTAGAGGGGGACCGGGCCGATCCCCT-GCTT
193 GA-CTGAAGGTTGTGGCAGCAGGACCGACAGCACGCAGAGGGGGACCGAGCCAAT-CCCTGGCTT
* ** *
35227795 GCGCATTATGCCTCTCCGGTCGGCTCAGCGCCCGCACGCTCGTTTCATGAGTTGACTTAG
256 GCGCATTATGCATCTCCGACCGGCTCAGCGCCCGCACGCTCATTTCATGAGTTGACTTAG
** * * *
35227855 GCATATGGAGTTCATTCCTAGTCTAAGATCGGACTGGATTGAGGGTTGTT---GCAGCAGGATCA
1 GCATACAGAGTTCATTCCTAGTCTAAGATCGGACCGGACTGAGGG-TGTTGCGGCAGCAGGATCG
* * * * * *
35227917 ACAACATGCAGGGGGCACCGGGCTGATCCCCGGCTTGCACATTCTACCTCTCCGATTGGCTGAGC
65 ACAGC--GCAGGGGGGACCAGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGATCGGCTGAGC
* * * * * *
35227982 GCCCGCACGCTCGTTTCGTGGGTGGGCTTAGGCGTACGAATTTCATTCCATGTCTAAGC
128 GCCCGCACG-TCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
35228041 ATACGGAGTT
Statistics
Matches: 429, Mismatches: 61, Indels: 25
0.83 0.12 0.05
Matches are distributed among these distances:
315 14 0.03
316 143 0.33
317 242 0.56
318 30 0.07
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (315 bp):
GCATACAGAGTTCATTCCTAGTCTAAGATCGGACCGGACTGAGGGTGTTGCGGCAGCAGGATCGA
CAGCGCAGGGGGGACCAGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGATCGGCTGAGCGCC
CGCACGTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCGGAC
TGAAGGTTGTGGCAGCAGGACCGACAGCACGCAGAGGGGGACCGAGCCAATCCCTGGCTTGCGCA
TTATGCATCTCCGACCGGCTCAGCGCCCGCACGCTCATTTCATGAGTTGACTTAG
Found at i:35228045 original size:26 final size:26
Alignment explanation
Indices: 35228016--35228065 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
35228006 GGCTTAGGCG
*
35228016 TACGAATTTCATT-CCATGTCTAAGCA
1 TACGAAGTTCATTCCCA-GTCTAAGCA
*
35228042 TACGGAGTTCATTCCCAGTCTAAG
1 TACGAAGTTCATTCCCAGTCTAAG
35228066 ATTGGACTGG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
26 18 0.86
27 3 0.14
ACGTcount: A:0.28, C:0.24, G:0.16, T:0.32
Consensus pattern (26 bp):
TACGAAGTTCATTCCCAGTCTAAGCA
Found at i:35228912 original size:159 final size:159
Alignment explanation
Indices: 35228605--35229020 Score: 396
Period size: 159 Copynumber: 2.6 Consensus size: 159
35228595 GGTCGGGTCG
* * * * *
35228605 ATCCCCAGCTTGCGCATTCTACCTCTCCG--AGACTGAGTGCCCGCACACTCGTTTCATGGGTTG
1 ATCCCCAGCTTACGCATTATACCTCTCCGATAGGCTCAGTGCCCGCACGCTCGTTTCATGGGTTG
* * ** *
35228668 -GCTTAGACATACGGAGTTCATT-CCATGTCTAAGCCCCAGCCGGATCGAGGGTTGTGATAGCGG
66 AG-TTAGGCATACGGAGTTCATTCCCA-GTCTAAGCACCAGCCGGATCGAGGGTTGCAATAGCAG
* * *
35228731 GACTGACAGCATGTAAACGGGGATCGAGACG
129 GACTGACAGCACGTAAACGGGGACCGAGACA
* ** * * * *
35228762 ATCCCTAGCTTGTGCATTATGCCTCTTCGGCT-GGCTCAGTGCCCGTACGCTCGTTTCATGGGTT
1 ATCCCCAGCTTACGCATTATACCTC-TCCGATAGGCTCAGTGCCCGCACGCTCGTTTCATGGGTT
* * * *
35228826 GAGTTAGGCATATGGAGTTCATTCCCAGTCTAAG-ATCAGACTGGATTGAGGGTTGCAATAGCAG
65 GAGTTAGGCATACGGAGTTCATTCCCAGTCTAAGCACCAG-CCGGATCGAGGGTTGCAATAGCAG
*** * *
35228890 GATCT-ACAGCACGTAGTGGGGGACCTAGTCA
129 GA-CTGACAGCACGTAAACGGGGACCGAGACA
* * * * * *
35228921 ATCCCCGGCTTACGTATTCTACCTCTCCGATAGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTG
1 ATCCCCAGCTTACGCATTATACCTCTCCGATAGGCTCAGTGCCCGCACGCTCGTTTCATGGGTTG
* * *
35228986 ACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCA
66 AGTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
35229021 TACGGAGTTC
Statistics
Matches: 207, Mismatches: 43, Indels: 15
0.78 0.16 0.06
Matches are distributed among these distances:
157 21 0.10
158 10 0.05
159 169 0.82
160 7 0.03
ACGTcount: A:0.21, C:0.26, G:0.27, T:0.26
Consensus pattern (159 bp):
ATCCCCAGCTTACGCATTATACCTCTCCGATAGGCTCAGTGCCCGCACGCTCGTTTCATGGGTTG
AGTTAGGCATACGGAGTTCATTCCCAGTCTAAGCACCAGCCGGATCGAGGGTTGCAATAGCAGGA
CTGACAGCACGTAAACGGGGACCGAGACA
Found at i:35229022 original size:26 final size:26
Alignment explanation
Indices: 35228992--35229044 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
35228982 GTTGACTTAG
35228992 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
35229018 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
35229044 G
1 G
35229045 ATAGAACAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:35229202 original size:184 final size:185
Alignment explanation
Indices: 35228833--35229203 Score: 424
Period size: 184 Copynumber: 2.0 Consensus size: 185
35228823 GTTGAGTTAG
* * ** * * *
35228833 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACTGGATTGAGGGTTGCAATAGCAGGATCTACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACAGGACCGAGGGTTACAACAGCAGGATCGACA
* * * *
35228898 GCACGTAGTGGGGGACCTAGTCAATCCCCGGCTTACGTATTCTACCTCTCCGATAGGTTGAGCGC
66 GCACGTAGTGGGGGACCGAGTCAATCCCCGGCTTACGCATTCTACCTCTCCGACAGGCTGAGCGC
* *
35228963 CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAA
131 CCGCACGCTCGTTTCATGGGTTGACTTAAGCATAAGAAGTTCATCCCCAGTCTAA
* **
35229018 GCATACGGAGTTCATTCCCAGTCTAAGAT-AGAACAGGACCGAGGGTTACGACAGCAGGATCGGT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACAGGACCGAGGGTTACAACAGCAGGATCGAC
* * * * * * * * * *
35229082 AGCACGTTG-GGGGGATCGGGTCGATCCCTGGCTTGCGCATTCTACCTCTCTGGCCGGCTGAGTG
65 AGCACGTAGTGGGGGACCGAGTCAATCCCCGGCTTACGCATTCTACCTCTCCGACAGGCTGAGCG
** * * *
35229146 CCCGCACGCTCGTTTGGTGGGTTGGCTTAAGCATAAGGAGTTCAT-TCCATGTCTAA
130 CCCGCACGCTCGTTTCATGGGTTGACTTAAGCATAAGAAGTTCATCCCCA-GTCTAA
35229202 GC
1 GC
35229204 CCCAGTCAGA
Statistics
Matches: 153, Mismatches: 31, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
183 3 0.02
184 91 0.59
185 59 0.39
ACGTcount: A:0.22, C:0.25, G:0.28, T:0.25
Consensus pattern (185 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACAGGACCGAGGGTTACAACAGCAGGATCGACA
GCACGTAGTGGGGGACCGAGTCAATCCCCGGCTTACGCATTCTACCTCTCCGACAGGCTGAGCGC
CCGCACGCTCGTTTCATGGGTTGACTTAAGCATAAGAAGTTCATCCCCAGTCTAA
Found at i:35229536 original size:499 final size:504
Alignment explanation
Indices: 35228591--35229638 Score: 1147
Period size: 499 Copynumber: 2.1 Consensus size: 504
35228581 CGATCACGCA
** * *
35228591 GGGGGG-TCGGGTCGATCCCCAGCTTGCGCATTCTACCTCTC-CG-AGACTGAGTGCCCGCACAC
1 GGGGGGATCGGGTCGATCCCTGGCTTGCGCATTCTACCTCTCTGGCCGACTGAGTGCCCGCACAC
* * *
35228653 TCGTTTCATGGGTTGGCTTAGACATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAGG
66 TCGTTTCATGGGTTGGCTTAGACATAAGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGG
* * * * **
35228718 GTTGTGATAGCGGGACTGACAGCATGTAAACGGGGATCGAGACGATCCCTAGCTTGTGCATTATG
131 GTTGTGATAGCGGGAATGACAGCACGTAAACGGGGATCCAGACGATCCCCAGCTTACGCATTATG
* ** * * * * *
35228783 CCTCTTCGGCTGGCTCAGTGCCCGTACGCTCGTTTCATGGGTTGAGTTAGGCATATGGAGTTCAT
196 CATCTTCGGCCAGCTCAGCGCCCGAACGCTCGGTTCATGGGTTGACTTAGGCATACGGAGTTCAT
* ** * * ** *
35228848 TCCCAGTCTAAGATCAGACTGGATTGAGGGTTGCAATAGCAGGATCTACAGCACGTAGTGGGGGA
261 TCCCAGTCTAAGATCAGACTCGACCGAGGGTTACAATAGCAGGATCGACAGCACACAGGGGGGGA
* * * *
35228913 CCTAGTCAATCCCCGGCTTACGTATTCTACCTCTCCGATAGGTTGAGCGCCCGCACGCTCGTTTC
326 CCAAGTCAATCCCCGGCTTACGCATTCTACCTCTCCGATAGGCTGAGCGCCCGCACGCTAGTTTC
* * *
35228978 ATGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
391 ATGGGTTGACTTAGGCATACAAAGTTCATCCACAGTCTAAGCATACAGAGTTCATTCCCAGTCTA
* ** * *
35229043 AGAT-AGAACAGGA-CCGAGGGTTACGACAGCAGGATCGGTAGCACGT-T
456 AGATCAG-ACAGGATCCGAGAGTTACGACAGCAGGATCGACAGCACATAC
* *
35229090 GGGGGGATCGGGTCGATCCCTGGCTTGCGCATTCTACCTCTCTGGCCGGCTGAGTGCCCGCACGC
1 GGGGGGATCGGGTCGATCCCTGGCTTGCGCATTCTACCTCTCTGGCCGACTGAGTGCCCGCACAC
** * *
35229155 TCGTTTGGTGGGTTGGCTTA-AGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAT
66 TCGTTTCATGGGTTGGCTTAGA-CATAAGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAG
* * * * *
35229219 GGTTGTGGTAGC-GGAATGGCAGCACGTAGAGGGGGA-CCAGACCGATCCCCAGCTTACGTA-TA
130 GGTTGTGATAGCGGGAATGACAGCACGTAAACGGGGATCCAGA-CGATCCCCAGCTTACGCATTA
* * * * *
35229281 TGGCATTTTCGGCCAGTTCAGCGCCTGAAATGCTCGGTTCGT-GGTTGACTTA-GCATACGGAGT
194 T-GCATCTTCGGCCAGCTCAGCGCCCG-AACGCTCGGTTCATGGGTTGACTTAGGCATACGGAGT
* * * * * *
35229344 TCATTCCTAGTCTATGATCGGAC-CGACCGAGGGTTACAATAGTAGGATCGATAGCACACCGGGG
257 TCATTCCCAGTCTAAGATCAGACTCGACCGAGGGTTACAATAGCAGGATCGACAGCACACAGGGG
** * ** * * * *
35229408 GGGACCAAGTCGGTCCTCGGCTTGGGCATTC-AGCCTCTTCGATCGGCTGAGCGCCTGCATGCTA
322 GGGACCAAGTCAATCCCCGGCTTACGCATTCTA-CCTCTCCGATAGGCTGAGCGCCCGCACGCTA
* * * *
35229472 GTTTCGTGGGTTGGCTTAGGCATACAAAGTTCAT-TAGATGTCTAAGCATACAGAGTTCATTCCC
386 GTTTCATGGGTTGACTTAGGCATACAAAGTTCATCCACA-GTCTAAGCATACAGAGTTCATTCCC
* * *
35229536 AGTCTAAGATCAGACCGGATCCGAGAGTTGCGACAGTAGGATCGACAGCACATAAC
450 AGTCTAAGATCAGACAGGATCCGAGAGTTACGACAGCAGGATCGACAGCACAT-AC
* * * * *
35229592 GGGGGGA-CTGAGTCGATCCTTGGCTTGCGTATTCTGCCTCTTTGGCC
1 GGGGGGATC-GGGTCGATCCCTGGCTTGCGCATTCTACCTCTCTGGCC
35229639 AGCCTTTCCG
Statistics
Matches: 451, Mismatches: 84, Indels: 25
0.81 0.15 0.04
Matches are distributed among these distances:
498 2 0.00
499 155 0.34
500 99 0.22
501 63 0.14
502 132 0.29
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.25
Consensus pattern (504 bp):
GGGGGGATCGGGTCGATCCCTGGCTTGCGCATTCTACCTCTCTGGCCGACTGAGTGCCCGCACAC
TCGTTTCATGGGTTGGCTTAGACATAAGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGG
GTTGTGATAGCGGGAATGACAGCACGTAAACGGGGATCCAGACGATCCCCAGCTTACGCATTATG
CATCTTCGGCCAGCTCAGCGCCCGAACGCTCGGTTCATGGGTTGACTTAGGCATACGGAGTTCAT
TCCCAGTCTAAGATCAGACTCGACCGAGGGTTACAATAGCAGGATCGACAGCACACAGGGGGGGA
CCAAGTCAATCCCCGGCTTACGCATTCTACCTCTCCGATAGGCTGAGCGCCCGCACGCTAGTTTC
ATGGGTTGACTTAGGCATACAAAGTTCATCCACAGTCTAAGCATACAGAGTTCATTCCCAGTCTA
AGATCAGACAGGATCCGAGAGTTACGACAGCAGGATCGACAGCACATAC
Found at i:35232083 original size:159 final size:154
Alignment explanation
Indices: 35231797--35232261 Score: 366
Period size: 159 Copynumber: 3.0 Consensus size: 154
35231787 AAGATCAGAC
* ** * * * * *
35231797 CGGACCAAGGGTTGCGGCAGCAGGATCGGTACCAAACAGGGGGGA-CTGAGCCGATCCCTGACTT
1 CGGACCGAGGGTTGC-GCAGCAGGATCGACAGCACACAGGTGGGATC-GGGCCGATCCCCGACTT
* * * * * * *
35231861 GCGTATTCTGCCTCTCCGG-CTGACTGAGCACCCGCACA-AC-CGTTTCGTGGGTTGGCTTAGGC
64 GCGCATTATGCCTCTCCGGCCAG-CTCAACGCCCG-A-ATGCTCGTTTCGTGGGTT-GCTTAGGC
**
35231923 ATAAGGAGTTCATTCCATGTCTAATCCTTAGT
125 ATAAGGAGTTCATTCCATGTCTAAT-CGGA-T
* ** * * *
35231955 CGGACCGAGGGTTGTGGCAGTGGGATCGACAGCAGGCAGAGG-GGGATCGGGTCGATCCCCGGCT
1 CGGACCGAGGGTTG-CGCAGCAGGATCGACAGCA--CACAGGTGGGATCGGGCCGATCCCCGACT
* * * ** * *
35232019 TGTGCATTATGCCTCTCCGGTCGGCTCAGTGCCTGAATGCTCGTTTCGTGGTTTGACTTAGGCAT
63 TGCGCATTATGCCTCTCCGGCCAGCTCAACGCCCGAATGCTCGTTTCGTGGGTTG-CTTAGGCAT
*
35232084 ACGGAGTTCATTCTCA-GTCTAAGATCGGAT
127 AAGGAGTTCATTC-CATGTCT-A-ATCGGAT
* * * *
35232114 CGGATCGAGGGTTGCGTAGCAGGATCGACAGCACACAGGTGGGATCGGGCCTATCCTCGACTTGC
1 CGGACCGAGGGTTGCGCAGCAGGATCGACAGCACACAGGTGGGATCGGGCCGATCCCCGACTTGC
* * * * * * * *
35232179 GTATTCTGCCTCTCTGGCCAGCTGAACGCCCGCATGCTCGTTTCGTGGGTTGGTTAGGCATATGA
66 GCATTATGCCTCTCCGGCCAGCTCAACGCCCGAATGCTCGTTTCGTGGGTTGCTTAGGCATAAGG
35232244 AGTTCATTCCATGTCTAA
131 AGTTCATTCCATGTCTAA
35232262 GCATACAGAG
Statistics
Matches: 243, Mismatches: 51, Indels: 30
0.75 0.16 0.09
Matches are distributed among these distances:
154 1 0.00
155 3 0.01
156 28 0.12
157 62 0.26
158 44 0.18
159 91 0.37
160 12 0.05
161 2 0.01
ACGTcount: A:0.18, C:0.25, G:0.31, T:0.25
Consensus pattern (154 bp):
CGGACCGAGGGTTGCGCAGCAGGATCGACAGCACACAGGTGGGATCGGGCCGATCCCCGACTTGC
GCATTATGCCTCTCCGGCCAGCTCAACGCCCGAATGCTCGTTTCGTGGGTTGCTTAGGCATAAGG
AGTTCATTCCATGTCTAATCGGAT
Found at i:35233443 original size:26 final size:26
Alignment explanation
Indices: 35233407--35233489 Score: 141
Period size: 26 Copynumber: 3.2 Consensus size: 26
35233397 GTTGGCTTAG
*
35233407 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
35233433 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
35233459 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
35233485 GCATA
1 GCATA
35233490 TGCCTTTTCG
Statistics
Matches: 55, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
25 3 0.05
26 52 0.95
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:35233910 original size:26 final size:26
Alignment explanation
Indices: 35233860--35233912 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35233850 GTTGACTTAG
*
35233860 GCATACGGAGTTCATCCTCATTCTAA
1 GCATACGGAGTTCATCCTCAATCTAA
35233886 GCATACGGAGTTCATTCC-CAATCTAA
1 GCATACGGAGTTCA-TCCTCAATCTAA
35233912 G
1 G
35233913 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCTCAATCTAA
Found at i:35234571 original size:26 final size:26
Alignment explanation
Indices: 35234533--35234588 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
35234523 TGGGTTGACT
*
35234533 TAAGCATATAGAGTTCATCCCCAGTC
1 TAAGCATACAGAGTTCATCCCCAGTC
**
35234559 TAAGCATACAGAGTTCATTTCCAGTC
1 TAAGCATACAGAGTTCATCCCCAGTC
35234585 TAAG
1 TAAG
35234589 ATCAGACCAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.32, C:0.23, G:0.16, T:0.29
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATCCCCAGTC
Found at i:35234769 original size:676 final size:677
Alignment explanation
Indices: 35233809--35235064 Score: 1613
Period size: 676 Copynumber: 1.9 Consensus size: 677
35233799 CACACATTAT
* * * * *
35233809 GCCTCTCCGATCGGTTGAGCACCCGCACGCTTATTTCGTGGGTTGACTTAGGCATACGGAGTTCA
1 GCCTCTCCGATCGGCTGAGCACCCGCACGCTCATTTAGTGGGTTGACTTAAGCATACAGAGTTCA
* * * * * *
35233874 TCCTCATTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGATCGGACCAAGGGTTGCGACA
66 TCCCCAGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCAGACCAGACCAAGGGTTGCGACA
** * * *
35233939 GCAGGATCGACAGCATGCAGGAGGGATCGAGCCGATCCCCGGCTTGCGCATTCTACCTCTCTAGT
131 GCAGGATCGACAGCACACAGGAGGGATCGAGCCGATCCCCGGCTTACGCATTCTACCTCTCGAGC
* * *
35234004 TGGTTGAGCGCCCACATGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTA
196 TGGCTGAGCGCCCACATGCCCATTTCATGGGTTAGCTTAGGCATAGGGAGTTCATTCCATGTCTA
* *
35234069 AGCCCCAGCCGGATTGAAGGTTGTGGCCA-CGGGA-TCGGCAGCACACAGAAGGGGACCAGGTCG
261 AGCCCCAGCCGGACTGAAGGTTGTGG-CAGCGGGACT-GGCAGCACACAGAAGGGGACCAGGCCG
* *
35234132 AT-CCTCGACTTGCGCATTATGCCTCTT-CGGCCTGCCCAGTGCCCGAATGCTCTTTTCGTGGGT
324 ATCCCT-GACTTGCGCATTATGCCT-TTCCGGCCGGCCCAGCGCCCGAATGCTCTTTTCGTGGGT
* *
35234195 TGACTTATGCATACGGAGTTCATTCCCAGTCTAAGAT-AGGA-TCGGATCGAGGGTTGCGACAGC
387 TGACTTACGCATACGGAGTTCATTCCCAGTCTAAGATCA-GACT-GGACCGAGGGTTGCGACAGC
* * * *
35234258 AAGATCGATAGCATGCACGGGGAAC-GGG-CTGATACCCT-GCTTGCACATTCTACCTCTCCGGC
450 AAGATCGATAGCACGAACGGGGAACTGGGCCAG-T-CCCTGGCTTGCACATTCTACCTCTCCGAC
* *
35234320 CGACTGAGCGCTCGCACGC-TCATT-TCGTGGGTTGGCTTAGGCATACTAAGTTCATTCCATGTC
513 CGACTGAGCGCCCGCAC-CTTCATTCT-GTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTC
35234383 TAAGCCCCAGCCGGACCGAGGGTTTTCGTAGCAGGACCTACAGTGGGATCGGTAGCACGTAGAGG
576 TAAGCCCCAGCCGGACCGAGGGTTTTCGTAGCAGGACCTACAGTGGGATCGGTAGCACGTAGAGG
35234448 GGGACCGGGCTGATCCCCGACTTGCACATTATGCCTG
641 GGGACCGGGCTGATCCCCGACTTGCACATTATGCCTG
* * * *
35234485 GCCTCTCCGATCGGCTGAGCGCTCGTACGCTCATTTAGTGGGTTGACTTAAGCATATAGAGTTCA
1 GCCTCTCCGATCGGCTGAGCACCCGCACGCTCATTTAGTGGGTTGACTTAAGCATACAGAGTTCA
* * * * *
35234550 TCCCCAGTCTAAGCATACAGAGTTCATTTCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCA
66 TCCCCAGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCAGACCAGACCAAGGGTTGCGACA
* * * *
35234615 GCAGGATCGACAGCACACA-GAGGGGATCG-GATCGATCCCTGGCTTACGCATTTTGCCTCTCCG
131 GCAGGATCGACAGCACACAGGA-GGGATCGAG-CCGATCCCCGGCTTACGCATTCTACCTCT-CG
* * ** **
35234678 A-CTGGCTGAGTGCCCGCATGCCCATTTTGTTTGTTAGCTTAGGCATAGGGAGTTCATTCCATGT
193 AGCTGGCTGAGCGCCCACATGCCCATTTCATGGGTTAGCTTAGGCATAGGGAGTTCATTCCATGT
* * * * * * * *
35234742 CTAAGTCCCAGTCGGACTGAGGGTTGTGGCAGTGGGACTGGCAGCACGCAGAGGGGGATCGGGCC
258 CTAAGCCCCAGCCGGACTGAAGGTTGTGGCAGCGGGACTGGCAGCACACAGAAGGGGACCAGGCC
* * * *
35234807 GATCCCTGACTTGCGCATTATTCCTTTCCGGTCGGCTCAGCGCCCGCATGCTCTTTTCGTGGGTT
323 GATCCCTGACTTGCGCATTATGCCTTTCCGGCCGGCCCAGCGCCCGAATGCTCTTTTCGTGGGTT
* ** *
35234872 GACTTACGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGTGGTAGCAGG
388 GACTTACGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGACAGCAAG
* * * * * * *
35234937 ATCGATAGCACGAAGGGGGGACTGGGCCAGTCTCTGGCTTGCGCATTCTGCCTCTCCGATCGGCT
453 ATCGATAGCACGAACGGGGAACTGGGCCAGTCCCTGGCTTGCACATTCTACCTCTCCGACCGACT
* * *
35235002 GAGTGCCCGTACCTTCATTCTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
518 GAGCGCCCGCACCTTCATTCTGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGC
35235065 ATACGGAATT
Statistics
Matches: 490, Mismatches: 76, Indels: 27
0.83 0.13 0.05
Matches are distributed among these distances:
675 7 0.01
676 390 0.80
677 90 0.18
678 3 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.25
Consensus pattern (677 bp):
GCCTCTCCGATCGGCTGAGCACCCGCACGCTCATTTAGTGGGTTGACTTAAGCATACAGAGTTCA
TCCCCAGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCAGACCAGACCAAGGGTTGCGACA
GCAGGATCGACAGCACACAGGAGGGATCGAGCCGATCCCCGGCTTACGCATTCTACCTCTCGAGC
TGGCTGAGCGCCCACATGCCCATTTCATGGGTTAGCTTAGGCATAGGGAGTTCATTCCATGTCTA
AGCCCCAGCCGGACTGAAGGTTGTGGCAGCGGGACTGGCAGCACACAGAAGGGGACCAGGCCGAT
CCCTGACTTGCGCATTATGCCTTTCCGGCCGGCCCAGCGCCCGAATGCTCTTTTCGTGGGTTGAC
TTACGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGACAGCAAGATC
GATAGCACGAACGGGGAACTGGGCCAGTCCCTGGCTTGCACATTCTACCTCTCCGACCGACTGAG
CGCCCGCACCTTCATTCTGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAG
CCGGACCGAGGGTTTTCGTAGCAGGACCTACAGTGGGATCGGTAGCACGTAGAGGGGGACCGGGC
TGATCCCCGACTTGCACATTATGCCTG
Found at i:35235041 original size:158 final size:158
Alignment explanation
Indices: 35234562--35235063 Score: 492
Period size: 158 Copynumber: 3.2 Consensus size: 158
35234552 CCCAGTCTAA
* *
35234562 GCATACAGAGTTCATTTCCA-GTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGAC
1 GCATACGGAGTTCA-TTCCATGTCTAAGATCAGA-CGGACCGAGGGTTGTGGCAGCAGGATCGAC
* ** * *
35234626 AGCAC-ACAGAGGGGATCGGATCGATCCCTGGCTTACGCATTTTGCCTCTCCGA-CTGGCTGAGT
64 AGCACGA-AGGGGGGATCGGGCCGATCCCTGGCTTGCGCATTATGCCTCTCCGATC-GGCTGAGT
* ** *
35234689 GCCCGCATGCC--CATTTTGTTTGTTAGCTTAG
127 GCCCG-ATGCCTTCATTCTGTGGGTTGGCTTAG
* * * ** *
35234720 GCATAGGGAGTTCATTCCATGTCTAAG-TCCCAGTCGGACTGAGGGTTGTGGCAGTGGGA-CTGG
1 GCATACGGAGTTCATTCCATGTCTAAGAT--CAGACGGACCGAGGGTTGTGGCAGCAGGATC-GA
* * * * * * *
35234783 CAGCACGCAGAGGGGGATCGGGCCGATCCCTGACTTGCGCATTATTCCTTTCCGGTCGGCTCAGC
63 CAGCACGAAG-GGGGGATCGGGCCGATCCCTGGCTTGCGCATTATGCCTCTCCGATCGGCTGAGT
* *
35234848 GCCCGCATGCTCTT--TTC-GTGGGTTGACTTAC
127 GCCCG-ATGC-CTTCATTCTGTGGGTTGGCTTAG
* *
35234879 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGACTGGACCGAGGGTTGTGGTAGCAGGATCGAT
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGAC-GGACCGAGGGTTGTGGCAGCAGGATCGAC
* *
35234943 AGCACGAAGGGGGGA-CTGGGCC-AGTCTCTGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGT
64 AGCACGAAGGGGGGATC-GGGCCGA-TCCCTGGCTTGCGCATTATGCCTCTCCGATCGGCTGAGT
*
35235006 GCCCG-TACCTTCATTCTGTGGGTTGGCTTAG
127 GCCCGATGCCTTCATTCTGTGGGTTGGCTTAG
35235037 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
35235064 CATACGGAAT
Statistics
Matches: 278, Mismatches: 46, Indels: 40
0.76 0.13 0.11
Matches are distributed among these distances:
155 3 0.01
156 2 0.01
157 15 0.05
158 135 0.49
159 114 0.41
160 9 0.03
ACGTcount: A:0.19, C:0.25, G:0.30, T:0.26
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACGGACCGAGGGTTGTGGCAGCAGGATCGACAG
CACGAAGGGGGGATCGGGCCGATCCCTGGCTTGCGCATTATGCCTCTCCGATCGGCTGAGTGCCC
GATGCCTTCATTCTGTGGGTTGGCTTAG
Found at i:35235076 original size:26 final size:26
Alignment explanation
Indices: 35235037--35235089 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35235027 GTTGGCTTAG
*
35235037 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAATTCATTCCCA-GTCTAA
35235063 GCATACGGAATTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
35235089 G
1 G
35235090 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAATTCATTCCCAGTCTAA
Found at i:35236153 original size:26 final size:26
Alignment explanation
Indices: 35236117--35236167 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
35236107 TTGGCTTAGG
*
35236117 CATATGGAGTTCA-TCCCTAGTCTAAA
1 CATATAGAGTTCATTCCC-AGTCTAAA
35236143 CATATAGAGTTCATTCCCAGTCTAA
1 CATATAGAGTTCATTCCCAGTCTAA
35236168 GATCAGACCG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.31, C:0.24, G:0.14, T:0.31
Consensus pattern (26 bp):
CATATAGAGTTCATTCCCAGTCTAAA
Found at i:35237020 original size:26 final size:26
Alignment explanation
Indices: 35236984--35237036 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
35236974 GTTGACTTAG
35236984 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
35237010 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
35237036 G
1 G
35237037 ATTGGATTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:35237163 original size:355 final size:360
Alignment explanation
Indices: 35236748--35237589 Score: 948
Period size: 368 Copynumber: 2.3 Consensus size: 360
35236738 GTCGATCCCT
** *
35236748 GGCTTGTGCATTCTACCTCTCCGACCAACTGAGCGCCCGTACACTCGTTTCGTGGGTTGGCTTAG
1 GGCTTGTGCATTCTACCTCTCCGACCGGCTGAGCGCCCGCACACTCGTTTCGTGGGTTGGCTTAG
* * *
35236813 GCATACAGAGTTCATTCCATGTCTAAGCCCTAGCCAGATCGAGGGTTGTGGCAGCATGATCGGTA
66 GCATACGGAGTTCATTCCATGTCTAAGCCCTAGCCAGATCGAGGGTTGTGGCAGCAGGACCGGTA
* * ** * ***
35236878 GTGGGAACGATAGCATGTAGAGGGGGACCGGGCTGAT-CCTCGGCTTGTGCATTATGCCTCTCCG
131 GCGGGAACGACAGCACATAGAGGGGGACCGGGCTGATCCCT-AGCTTACACATTATGCCTCTCCG
** ** *
35236942 A-C-C-G-GA-TGAGCCCCCGTACACTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCAT-TC
195 ACCTCTGAGACTGAGCCCCCACACACTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATCT-
* * ** *
35237001 CCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGATTGGACCGAGGGTTACGACAGCA
259 CCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTACGACAGCA
** * *
35237066 GGATCGGTAGCACGTAGGGGGGA-TCGAGCCAAACCTC
324 GGATCGACAGCACGTAAGGGGGACT-GAGCCAAACCCC
* *
35237103 GGCTTGTGCATTCTACCTCTCCGACCGGCTGAGCGACCGCACACTCGTTTCATGGGTTGGCTTAG
1 GGCTTGTGCATTCTACCTCTCCGACCGGCTGAGCGCCCGCACACTCGTTTCGTGGGTTGGCTTAG
* * * *
35237168 GCATACGGAGTTAATTCCATATCTAAGCCCTAGCCAGATCGAGGGTTATGGCTGCAGGACCGGTA
66 GCATACGGAGTTCATTCCATGTCTAAGCCCTAGCCAGATCGAGGGTTGTGGCAGCAGGACCGGTA
* *
35237233 GCGGGATCGACAGCACATAGAGGGGGACTGGGCTGATCCCTAGCTTACACATTATGCCTCTCCGA
131 GCGGGAACGACAGCACATAGAGGGGGACCGGGCTGATCCCTAGCTTACACATTATGCCTCTCCGA
** *
35237298 CCGGCCTCTCTGATCGACTGAGTGCCCACACGCTCATTTCATGGGTTGACTTAGGCATACAGAGT
196 -----C-CTCTGA--GACTGAGCCCCCACACACTCATTTCATGGGTTGACTTAGGCATACAGAGT
* **
35237363 TCATCTCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGATCAAGGGTTGTG
253 TCATCTCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTACG
** * * * *
35237428 GTAGCAGGATCGACAGGACGTAAGGGGGACTGGGTCAATCCCC
318 ACAGCAGGATCGACAGCACGTAAGGGGGACTGAGCCAAACCCC
* * ** * *
35237471 AGCTTGCGCATTCTACCTCTCCAGTA--GGCTGAGCGCCCGCATGCCCGTTTTGTGGGTTGGCTT
1 GGCTTGTGCATTCTACCTCTCC-G-ACCGGCTGAGCGCCCGCACACTCGTTTCGTGGGTTGGCTT
* * * * * * *
35237534 AGGCATAGGGAGTTCATGCCACGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAG
64 AGGCATACGGAGTTCATTCCATGTCTAAGCCCTAGCCAGATCGAGGGTTGTGGCAG
35237590 TGGGACTAGT
Statistics
Matches: 402, Mismatches: 67, Indels: 23
0.82 0.14 0.05
Matches are distributed among these distances:
355 169 0.42
356 3 0.01
362 1 0.00
363 1 0.00
364 1 0.00
367 2 0.00
368 221 0.55
369 3 0.01
370 1 0.00
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (360 bp):
GGCTTGTGCATTCTACCTCTCCGACCGGCTGAGCGCCCGCACACTCGTTTCGTGGGTTGGCTTAG
GCATACGGAGTTCATTCCATGTCTAAGCCCTAGCCAGATCGAGGGTTGTGGCAGCAGGACCGGTA
GCGGGAACGACAGCACATAGAGGGGGACCGGGCTGATCCCTAGCTTACACATTATGCCTCTCCGA
CCTCTGAGACTGAGCCCCCACACACTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATCTCC
AGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTACGACAGCAGG
ATCGACAGCACGTAAGGGGGACTGAGCCAAACCCC
Found at i:35237382 original size:26 final size:26
Alignment explanation
Indices: 35237352--35237404 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
35237342 GTTGACTTAG
35237352 GCATACAGAGTTCA-TCTCCAGTCTAA
1 GCATACAGAGTTCATTC-CCAGTCTAA
35237378 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
35237404 G
1 G
35237405 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:35238907 original size:159 final size:158
Alignment explanation
Indices: 35238666--35239383 Score: 429
Period size: 159 Copynumber: 4.5 Consensus size: 158
35238656 CCCAACTTAT
* * * *
35238666 GCATTTTGCCTCTCCGGCCGGCT-AAGCGCCCACATGCCCATTTCGTGGGTT-AGCTTAGGTATA
1 GCATTATGCCTCTCCGGCCGGCTCAA-CGCCCACACGCTCATTTCGTGGGTTGA-CTTAGGCATA
* * * * *
35238729 GGGAGTTCATTCCATGTCTAAACCCCAATCGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACG
64 CGAAGTTCATTCCATGTCTAAACCCCAACCGGATCGAGGGTTGTGGCAGCAGGATCGACAGCACA
35238794 CAGAGGGGGACAAGGTTGATCCTCGGTTTA
129 CAGAGGGGGACAAGGTTGATCCTCGGTTTA
* * * *
35238824 CGCGTTATGCCTCTCCGGCCGGCTCAACGCCCGCATGCTCATTTTGTGGGTTGACTTAGGCATAC
1 -GCATTATGCCTCTCCGGCCGGCTCAACGCCCACACGCTCATTTCGTGGGTTGACTTAGGCATAC
* ** * * * * *
35238889 GGAGTTCATTCCCA-GTCTAAGA--TAAGACCGTATTGAGGGTTATGACAGTAGGATCGACAGCA
65 GAAGTTCATT-CCATGTCTAA-ACCCCA-ACCGGATCGAGGGTTGTGGCAGCAGGATCGACAGCA
* * * *
35238951 CACAGGGGGGGACCAGGTCGATCCCCGGCTTGT-
127 CACAGAGGGGGACAAGGTTGATCCTCGG-TT-TA
* * * * * * * * * * * *
35238984 GCATTTTGCCTCT-CGACCAGCTGAGCACCCACACGCTCGTTTCATTGGTTGGCTTAGGTATACA
1 GCATTATGCCTCTCCGGCCGGCTCAACGCCCACACGCTCATTTCGTGGGTTGACTTAGGCATACG
* * *
35239048 AAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAGGGTCGTGGCAGCAGGA-CTGACAGCACAC
66 AAGTTCATTCCATGTCTAAACCCCAACCGGATCGAGGGTTGTGGCAGCAGGATC-GACAGCACAC
* ** * * ** *
35239112 AGAAGGGGA-TTGGGTCAGTCCTCTACTTGA
130 AGAGGGGGACAAGGTTGA-TCCTC-GGTTTA
* * * ** ** * *
35239142 GCATTATGCCTCTTCGGTCGGTTCAGTGCCCGTACGCTCGTTTTGTGGGTTGACTTAGGCATACG
1 GCATTATGCCTCTCCGGCCGGCTCAACGCCCACACGCTCATTTCGTGGGTTGACTTAGGCATACG
* ** * * * ** * *
35239207 AAGTTCAATCCCA-GTCTAATA--TTAGACTGGACCAAGGGTTGCAGCAACAGGATTGACAGCAC
66 AAGTTC-ATTCCATGTCTAA-ACCCCA-ACCGGATCGAGGGTTGTGGCAGCAGGATCGACAGCAC
* * * ** **
35239269 ACAG-GGGGGATC-GGGCTGATCCCCTACTTGC
128 ACAGAGGGGGA-CAAGGTTGATCCTC-GGTTTA
* * * * * * * * * *
35239300 GCATTCTGCCTTTCTGGTCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGCCTTAGGCATACG
1 GCATTATGCCTCTCCGGCCGGCTCAACGCCCACACGCTCATTTCGTGGGTTGACTTAGGCATACG
*
35239365 GAGTTCATTCCATGTCTAA
66 AAGTTCATTCCATGTCTAA
35239384 GCATACGGAG
Statistics
Matches: 430, Mismatches: 107, Indels: 45
0.74 0.18 0.08
Matches are distributed among these distances:
157 12 0.03
158 188 0.44
159 215 0.50
160 14 0.03
161 1 0.00
ACGTcount: A:0.20, C:0.26, G:0.28, T:0.25
Consensus pattern (158 bp):
GCATTATGCCTCTCCGGCCGGCTCAACGCCCACACGCTCATTTCGTGGGTTGACTTAGGCATACG
AAGTTCATTCCATGTCTAAACCCCAACCGGATCGAGGGTTGTGGCAGCAGGATCGACAGCACACA
GAGGGGGACAAGGTTGATCCTCGGTTTA
Found at i:35239106 original size:158 final size:159
Alignment explanation
Indices: 35238606--35239120 Score: 488
Period size: 159 Copynumber: 3.3 Consensus size: 159
35238596 CAGACCAGAC
* ** * * * **
35238606 CGAGGTTTG-GGCAGCAGGATCGACAGCATGCATA-GGGGAC-CGGACCGATCCCCAACTTATGC
1 CGAGGGTTGTGGCAGCAGGATCGACAGCACACAGAGGGGGACAAGG-TCGATCCCCGGCTTATGC
* * *
35238668 ATTTTGCCTCTCCGGCCGGCTAAGCGCCCACATGCCCATTTCGTGGGTTAGCTTAGGTATAGGGA
65 ATTTTGCCTCTCCGGCCGGCTAAGCGCCCACATGCTCATTTCGTGGGTTGGCTTAGGTATACGGA
* ** *
35238733 GTTCATTCCATGTCTAAACCCCAATCGGAC
130 GTTCATTCCATGTCTAAGCCCCAGCCGGAT
* * * * * *
35238763 CGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGGACAAGGTTGATCCTCGGTTTACGCG
1 CGAGGGTTGTGGCAGCAGGATCGACAGCACACAGAGGGGGACAAGGTCGATCCCCGGCTTATGCA
* * * * *
35238828 TTATGCCTCTCCGGCCGGCTCAA-CGCCCGCATGCTCATTTTGTGGGTTGACTTAGGCATACGGA
66 TTTTGCCTCTCCGGCCGGCT-AAGCGCCCACATGCTCATTTCGTGGGTTGGCTTAGGTATACGGA
*** *
35238892 GTTCATTCCCA-GTCTAAG-ATAAGACCGTAT
130 GTTCATT-CCATGTCTAAGCCCCAG-CCGGAT
* * * * * * *
35238922 TGAGGGTTATGACAGTAGGATCGACAGCACACAGGGGGGGACCAGGTCGATCCCCGGCTTGTGCA
1 CGAGGGTTGTGGCAGCAGGATCGACAGCACACAGAGGGGGACAAGGTCGATCCCCGGCTTATGCA
* * * * * * * * **
35238987 TTTTGCCTCT-CGACCAGCTGAGCACCCACACGCTCGTTTCATTGGTTGGCTTAGGTATACAAAG
66 TTTTGCCTCTCCGGCCGGCTAAGCGCCCACATGCTCATTTCGTGGGTTGGCTTAGGTATACGGAG
35239051 TTCATTCCATGTCTAAGCCCCAGCCGGAT
131 TTCATTCCATGTCTAAGCCCCAGCCGGAT
* *
35239080 CGAGGGTCGTGGCAGCAGGA-CTGACAGCACACAGAAGGGGA
1 CGAGGGTTGTGGCAGCAGGATC-GACAGCACACAGAGGGGGA
35239121 TTGGGTCAGT
Statistics
Matches: 281, Mismatches: 67, Indels: 19
0.77 0.18 0.05
Matches are distributed among these distances:
157 13 0.05
158 112 0.40
159 149 0.53
160 7 0.02
ACGTcount: A:0.22, C:0.27, G:0.29, T:0.22
Consensus pattern (159 bp):
CGAGGGTTGTGGCAGCAGGATCGACAGCACACAGAGGGGGACAAGGTCGATCCCCGGCTTATGCA
TTTTGCCTCTCCGGCCGGCTAAGCGCCCACATGCTCATTTCGTGGGTTGGCTTAGGTATACGGAG
TTCATTCCATGTCTAAGCCCCAGCCGGAT
Found at i:35239338 original size:317 final size:317
Alignment explanation
Indices: 35238651--35239385 Score: 739
Period size: 317 Copynumber: 2.3 Consensus size: 317
35238641 GGGACCGGAC
* ** * * * * * * * * *
35238651 CGATCCCCAACTTATGCATTTTGCCTCTCCGGCCGGCTAAGCGCCCACATGCCCATTTCGTGGGT
1 CGATCCCCGACTTGCGCATTCTGCCTCT-CGACCAGCTGAGCACCCACACGCTCGTTTCATGGGT
* * * * *
35238716 TAGCTTAGGTATAGGGAGTTCATTCCATGTCTAAACCCCAATCGGACCGAGGGTTGTGGCAGCAG
65 TGGCTTAGGTATACGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTCGTGGCAGCAG
* * * ** * *
35238781 GATCGACAGCACGCAGAGGGGGACAAGGTTGATCCTCGGTTTACGCGTTATGCCTCTCCGGCCGG
130 GATCGACAGCACACAGAAGGGGACAAGGTAGATCCTCACTTGACGCATTATGCCTCTCCGGCCGG
* * *
35238846 CTCAACGCCCGCATGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
195 CTCAACGCCCGCACGCTCATTTTGTGGGTTGACTTAGGCATACGAAGTTCAATCCCAGTCTAAGA
* *** **
35238911 TAAGACCGTATTGAGGGTTATGACAGTAGGATCGACAGCACACAGGGGGGGACCAGGT
260 TAAGACCGGACCAAGGGTTATGACAACAGGATCGACAGCACACAGGGGGGGACCAGGT
* * * *
35238969 CGATCCCCGGCTTGTGCATTTTGCCTCTCGACCAGCTGAGCACCCACACGCTCGTTTCATTGGTT
1 CGATCCCCGACTTGCGCATTCTGCCTCTCGACCAGCTGAGCACCCACACGCTCGTTTCATGGGTT
** * *
35239034 GGCTTAGGTATACAAAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAGGGTCGTGGCAGCAGG
66 GGCTTAGGTATACGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTCGTGGCAGCAGG
*** * *
35239099 A-CTGACAGCACACAGAAGGGGATTGGGTCAG-TCCTCTACTTGA-GCATTATGCCTCTTCGGTC
131 ATC-GACAGCACACAGAAGGGGACAAGGT-AGATCCTC-ACTTGACGCATTATGCCTCTCCGGCC
* ** * *
35239161 GGTTCAGTGCCCGTACGCTCGTTTTGTGGGTTGACTTAGGCATACGAAGTTCAATCCCAGTCTAA
193 GGCTCAACGCCCGCACGCTCATTTTGTGGGTTGACTTAGGCATACGAAGTTCAATCCCAGTCTAA
* * * * * *
35239226 TATTAGACTGGACCAAGGG-T-TGCAGCAACAGGATTGACAGCACACA-GGGGGGATC-GGG
258 GATAAGACCGGACCAAGGGTTATG-A-CAACAGGATCGACAGCACACAGGGGGGGACCAGGT
* * ** * * *
35239284 CTGATCCCCTACTTGCGCATTCTGCCTTTCTGGTC-GACTGAGCGCCCGCACGCTCGTTTCGTGG
1 C-GATCCCCGACTTGCGCATTCTGCCTCTC-GACCAG-CTGAGCACCCACACGCTCGTTTCATGG
* *
35239348 GTTGCCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
63 GTTGGCTTAGGTATACGGAGTTCATTCCATGTCTAAGC
35239386 ATACGGAGTT
Statistics
Matches: 341, Mismatches: 68, Indels: 17
0.80 0.16 0.04
Matches are distributed among these distances:
315 5 0.01
316 35 0.10
317 272 0.80
318 29 0.09
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.25
Consensus pattern (317 bp):
CGATCCCCGACTTGCGCATTCTGCCTCTCGACCAGCTGAGCACCCACACGCTCGTTTCATGGGTT
GGCTTAGGTATACGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTCGTGGCAGCAGG
ATCGACAGCACACAGAAGGGGACAAGGTAGATCCTCACTTGACGCATTATGCCTCTCCGGCCGGC
TCAACGCCCGCACGCTCATTTTGTGGGTTGACTTAGGCATACGAAGTTCAATCCCAGTCTAAGAT
AAGACCGGACCAAGGGTTATGACAACAGGATCGACAGCACACAGGGGGGGACCAGGT
Found at i:35239394 original size:26 final size:26
Alignment explanation
Indices: 35239358--35239410 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
35239348 GTTGCCTTAG
35239358 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
35239384 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
35239410 G
1 G
35239411 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:35242258 original size:159 final size:157
Alignment explanation
Indices: 35241874--35242375 Score: 442
Period size: 158 Copynumber: 3.2 Consensus size: 157
35241864 CCCAGTCTAA
** * *
35241874 ACATACCG-AGTTCATTCTTAGTCTAAGATCAGATCGA-ATCGAGGGTTACGGCAGCAGGATCGG
1 ACATA-CGAAGTTCATTCCCAGTCTAAGATCAGACCGACA--GAGGGTTGCGGCAGCAGGATCGG
* * * * * * * *
35241937 TAGCACACAGAGGGGACTGAACCGATCCCCAGCTTATGCATTCTGCCTCTCCGGTCGACTGAGCA
63 CAGCACGCAGAGGGGACCGAGCCGATCCCCGGCTTACGCATTCTGCCTCTCCAGTCGACTGAGCG
* *
35242002 CCTGTACGCCCGTTTCGTGGGTTGGCTTAG
128 CCTGTACGCTCGTTTCGTGGGTTGACTTAG
* * * ** * * ** *
35242032 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCA-ACCGAACCGAGGGTTGTGGCAGTGGGACCGG
1 ACATACGAAGTTCATTCCCA-GTCTAAG-ATCAGACCG-ACAGAGGGTTGCGGCAGCAGGATCGG
* * * *
35242095 CAGCACGCAGAGGGGTACCGAGCCGATCCCCGGCTTACGCATTATGCCTCTCCCGTCGACTCAGT
63 CAGCACGCAGAGGGG-ACCGAGCCGATCCCCGGCTTACGCATTCTGCCTCTCCAGTCGACTGAGC
*
35242160 GCCTGTACGCTTGTTTCGTGGGTTGACTTAG
127 GCCTGTACGCTCGTTTCGTGGGTTGACTTAG
* * *
35242191 ACATACGAAGTTCATTCCCAGTCTAAGATCAGACCTGACAGGGGGTTGCGGCAGCAGGATTGACA
1 ACATACGAAGTTCATTCCCAGTCTAAGATCAGACC-GACAGAGGGTTGCGGCAGCAGGATCGGCA
* * * ** * * * **
35242256 GCACGTAG-GAGGGATCGGGATGATCCCCGGCTTACGCATCCTGCCTCTCTAGTTGGTTGAGCG-
65 GCACGCAGAG-GGGACCGAGCCGATCCCCGGCTTACGCATTCTGCCTCTCCAGTCGACTGAGCGC
*
35242319 CTCGTACGCTCGTTTTGTGGGTTGACTTAG
129 CT-GTACGCTCGTTTCGTGGGTTGACTTAG
* * *
35242349 GCATAC-AGAGTTCATCCCCGGTCTAAG
1 ACATACGA-AGTTCATTCCCAGTCTAAG
35242376 CATACGGAGT
Statistics
Matches: 273, Mismatches: 59, Indels: 24
0.77 0.17 0.07
Matches are distributed among these distances:
157 5 0.02
158 140 0.51
159 124 0.45
160 4 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.24
Consensus pattern (157 bp):
ACATACGAAGTTCATTCCCAGTCTAAGATCAGACCGACAGAGGGTTGCGGCAGCAGGATCGGCAG
CACGCAGAGGGGACCGAGCCGATCCCCGGCTTACGCATTCTGCCTCTCCAGTCGACTGAGCGCCT
GTACGCTCGTTTCGTGGGTTGACTTAG
Found at i:35242385 original size:26 final size:26
Alignment explanation
Indices: 35242349--35242401 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
35242339 GTTGACTTAG
*
35242349 GCATACAGAGTTCATCCCCGGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
35242375 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
35242401 G
1 G
35242402 ATTGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:35242646 original size:26 final size:26
Alignment explanation
Indices: 35242610--35242662 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
35242600 GTTGACTTAT
35242610 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
*
35242636 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
35242662 G
1 G
35242663 ATCGAATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGTCTAA
Found at i:35244614 original size:159 final size:157
Alignment explanation
Indices: 35244230--35244731 Score: 442
Period size: 158 Copynumber: 3.2 Consensus size: 157
35244220 CCCAGTCTAA
** * *
35244230 ACATACCG-AGTTCATTCTTAGTCTAAGATCAGATCGA-ATCGAGGGTTACGGCAGCAGGATCGG
1 ACATA-CGAAGTTCATTCCCAGTCTAAGATCAGACCGACA--GAGGGTTGCGGCAGCAGGATCGG
* * * * * * * *
35244293 TAGCACACAGAGGGGACTGAACCGATCCCCAGCTTATGCATTCTGCCTCTCCGGTCGACTGAGCA
63 CAGCACGCAGAGGGGACCGAGCCGATCCCCGGCTTACGCATTCTGCCTCTCCAGTCGACTGAGCG
* *
35244358 CCTGTACGCCCGTTTCGTGGGTTGGCTTAG
128 CCTGTACGCTCGTTTCGTGGGTTGACTTAG
* * * ** * * ** *
35244388 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCA-ACCGAACCGAGGGTTGTGGCAGTGGGACCGG
1 ACATACGAAGTTCATTCCCA-GTCTAAG-ATCAGACCG-ACAGAGGGTTGCGGCAGCAGGATCGG
* * * *
35244451 CAGCACGCAGAGGGGTACCGAGCCGATCCCCGGCTTACGCATTATGCCTCTCCCGTCGACTCAGT
63 CAGCACGCAGAGGGG-ACCGAGCCGATCCCCGGCTTACGCATTCTGCCTCTCCAGTCGACTGAGC
*
35244516 GCCTGTACGCTTGTTTCGTGGGTTGACTTAG
127 GCCTGTACGCTCGTTTCGTGGGTTGACTTAG
* * *
35244547 ACATACGAAGTTCATTCCCAGTCTAAGATCAGACCTGACAGGGGGTTGCGGCAGCAGGATTGACA
1 ACATACGAAGTTCATTCCCAGTCTAAGATCAGACC-GACAGAGGGTTGCGGCAGCAGGATCGGCA
* * * ** * * * **
35244612 GCACGTAG-GAGGGATCGGGATGATCCCCGGCTTACGCATCCTGCCTCTCTAGTTGGTTGAGCG-
65 GCACGCAGAG-GGGACCGAGCCGATCCCCGGCTTACGCATTCTGCCTCTCCAGTCGACTGAGCGC
*
35244675 CTCGTACGCTCGTTTTGTGGGTTGACTTAG
129 CT-GTACGCTCGTTTCGTGGGTTGACTTAG
* * *
35244705 GCATAC-AGAGTTCATCCCCGGTCTAAG
1 ACATACGA-AGTTCATTCCCAGTCTAAG
35244732 CATACGGAGT
Statistics
Matches: 273, Mismatches: 59, Indels: 24
0.77 0.17 0.07
Matches are distributed among these distances:
157 5 0.02
158 140 0.51
159 124 0.45
160 4 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.24
Consensus pattern (157 bp):
ACATACGAAGTTCATTCCCAGTCTAAGATCAGACCGACAGAGGGTTGCGGCAGCAGGATCGGCAG
CACGCAGAGGGGACCGAGCCGATCCCCGGCTTACGCATTCTGCCTCTCCAGTCGACTGAGCGCCT
GTACGCTCGTTTCGTGGGTTGACTTAG
Found at i:35244741 original size:26 final size:26
Alignment explanation
Indices: 35244705--35244757 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
35244695 GTTGACTTAG
*
35244705 GCATACAGAGTTCATCCCCGGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
35244731 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
35244757 G
1 G
35244758 ATTGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:35245002 original size:26 final size:26
Alignment explanation
Indices: 35244966--35245018 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
35244956 GTTGACTTAT
35244966 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
*
35244992 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
35245018 G
1 G
35245019 ATCGAATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGTCTAA
Found at i:35247588 original size:26 final size:26
Alignment explanation
Indices: 35247558--35247609 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
35247548 GTTGGCTTAG
*
35247558 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
35247584 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
35247610 AATCAGACCA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:35247954 original size:26 final size:26
Alignment explanation
Indices: 35247925--35247977 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
35247915 GTTGACTTAG
*
35247925 GCATACGGAGTTCGTCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
35247951 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
35247977 G
1 G
35247978 ATTGAACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:35248150 original size:183 final size:183
Alignment explanation
Indices: 35247875--35248205 Score: 459
Period size: 183 Copynumber: 1.8 Consensus size: 183
35247865 ATGCATTATG
* * * *
35247875 CCTCTCCGACTGACTGAGCACCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCGT
1 CCTCTCCGACTGACTGAGCACCAGAACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCAT
*** * * * *
35247940 CCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGAT-TGAACTGGACCGAGGGTTGCGGCT
66 CCCCAGTCTAAGCATACAAAATTCATTCCCAGTCTAAGATCAG-ACTGGACCGAGGGTTGCAGCA
35248004 GCAGGATCGATAGCACGTAAAGGGATCGGGTCGATCCCCGACTTGCGCATTCTA
130 GCAGGATCGATAGCACGTAAAGGGATCGGGTCGATCCCCGACTTGCGCATTCTA
* * * *
35248058 CCTCTCCGGCTGGCTGAGCACCAGAACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCAT
1 CCTCTCCGACTGACTGAGCACCAGAACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCAT
* * *
35248123 -TCTATGTCTAAGCATACAAAATTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTGCAGCA
66 CCCCA-GTCTAAGCATACAAAATTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCAGCA
*
35248187 GCAGGATCTATAGCACGTA
130 GCAGGATCGATAGCACGTA
35248206 GGGGGGATCA
Statistics
Matches: 127, Mismatches: 19, Indels: 4
0.85 0.13 0.03
Matches are distributed among these distances:
182 2 0.02
183 124 0.98
184 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.26, T:0.25
Consensus pattern (183 bp):
CCTCTCCGACTGACTGAGCACCAGAACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCAT
CCCCAGTCTAAGCATACAAAATTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCAGCAG
CAGGATCGATAGCACGTAAAGGGATCGGGTCGATCCCCGACTTGCGCATTCTA
Found at i:35248633 original size:329 final size:315
Alignment explanation
Indices: 35248134--35248963 Score: 815
Period size: 317 Copynumber: 2.6 Consensus size: 315
35248124 CTATGTCTAA
* * *
35248134 GCATACAAAATTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTGCAGCAGCAGGATCTATA
1 GCATACAAAGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTGCAGCAGCAGGATCGACA
* * * * * ** *
35248199 GCACGTAGGGGGGATCAGGCTAATCCTCGACTTGCACATTCTGCCTCT-TCGACCGGCT-CAGGG
66 GCATGTA-GGGGGACCAGGCCAATCCTCG-CTTGCGCATTCTACCTCTCT-GGTCGGCTGC-GCG
** * * * * * *
35248262 CTTGCACGCTTGTTTTGCGGGTTAGCTTAGGCATATGGAGTTCATTCCATATCTAAACCCCAGCC
127 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAACCCCAGCC
* * *
35248327 AGACCGAGGGTTGTGGCAGTAGGACTGACAGCGAGATCGACAACACGCAGAGGAGGACTAGGCTA
192 AGACCGAGGGTTGTGGCAGCAGGAC---CAG-GAG--C-AC-ACA-G-AGACGAAG-C-AGGCTA
* * * * * * *
35248392 ATCCCCAGCTTGCGCATTATGCCTCTCCGACCGGTTGAGTGCTCGCACGCTCATTTCATGGGTTG
245 ATCCCCAGCTTACACATTATGCCTCTCCGACCAGCTCAGGGCCCGCACGCTCATTTCATGGGTTG
35248457 ACTTAG
310 ACTTAG
*
35248463 GCATACAAAGTTCATTCCCAGTCTAAGATCAGACTGGATCGAAGGTTGCAGCAGCAGGATCGACA
1 GCATACAAAGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTGCAGCAGCAGGATCGACA
* *
35248528 GCATGCAGGAGGGACCAGGCCAATCCCCAGCTTGCGCATTCTACCTCTCTGGTCGGCTGCGCGCC
66 GCATGTAGG-GGGACCAGGCCAATCCTC-GCTTGCGCATTCTACCTCTCTGGTCGGCTGCGCGCC
* * * * * ***
35248593 CGCACACCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCTGTAGCCAG
129 CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAACCCCAGCCAG
* * * ** * *
35248658 ACCGAGGGTTGTGGTAGCGGGACCAGTAGCACGTAGAGACGAAGCAGGCTGATCCCCGGCTTACA
194 ACCGAGGGTTGTGGCAGCAGGACCAGGAGCACACAGAGACGAAGCAGGCTAATCCCCAGCTTACA
* * * * * *
35248723 CATTATGCCTTTTCGGCCAGCTCAGGGCCCGCACGCTCGTTTCGTGGGTTGACTTAT
259 CATTATGCCTCTCCGACCAGCTCAGGGCCCGCACGCTCATTTCATGGGTTGACTTAG
* * * ** * * *
35248780 GCATACAGAGTTCATTCCCAGTGTAAGATCAGA-TCGGACCGAGGGTTGTGGTAGTAGGATTGAC
1 GCATACAAAGTTCATTCCCAGTCTAAGATCAGACT-GGATCGAGGGTTGCAGCAGCAGGATCGAC
* * * * * *
35248844 AGCATGTAGGGGGAACC-GAGTCGATCCTCGGCTTGCGCATTCTACCTCTCCGGTCGGTTGAGCA
65 AGCATGTAGGGGG-ACCAG-GCCAATCCTC-GCTTGCGCATTCTACCTCTCTGGTCGGCTGCGCG
35248908 CCTC-CACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
127 CC-CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
35248964 GCATACGCAG
Statistics
Matches: 419, Mismatches: 74, Indels: 28
0.80 0.14 0.05
Matches are distributed among these distances:
316 5 0.01
317 214 0.51
318 2 0.00
319 6 0.01
320 1 0.00
321 1 0.00
322 2 0.00
323 1 0.00
325 2 0.00
326 3 0.01
328 2 0.00
329 177 0.42
330 3 0.01
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.24
Consensus pattern (315 bp):
GCATACAAAGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTGCAGCAGCAGGATCGACA
GCATGTAGGGGGACCAGGCCAATCCTCGCTTGCGCATTCTACCTCTCTGGTCGGCTGCGCGCCCG
CACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAACCCCAGCCAGAC
CGAGGGTTGTGGCAGCAGGACCAGGAGCACACAGAGACGAAGCAGGCTAATCCCCAGCTTACACA
TTATGCCTCTCCGACCAGCTCAGGGCCCGCACGCTCATTTCATGGGTTGACTTAG
Found at i:35248942 original size:158 final size:156
Alignment explanation
Indices: 35248392--35248964 Score: 472
Period size: 158 Copynumber: 3.6 Consensus size: 156
35248382 GACTAGGCTA
* * * * * * *
35248392 ATCCCCAGCTTGCGCATTATGCCTCTCCGACCGGTTGAGTGCTCGCACGCTCATTTCATGGGTTG
1 ATCCCCGGCTTGCGCATTATACCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTG
* * * ** *
35248457 ACTTAGGCATACAAAGTTCATTCCCAGTCTAAGATCAGACTGGATCGAAGGTTGCAGCAGCAGGA
66 ACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGAC-GGACCGAGGGTTGTGGTAGCAGGA
* *
35248522 TCGACAGCATGCAGGAGGG-ACCAGGCCA
130 TCGACAGCATGTAGG-GGGAACCA-GCCG
* * * * * * *
35248550 ATCCCCAGCTTGCGCATTCTACCTCTCTGGTCGGCTGCGCGCCCGCACACCCGTTTCATGGGTTG
1 ATCCCCGGCTTGCGCATTATACCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTG
* ** * * * * *
35248615 GCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCTGTAGCCAGACCGAGGGTTGTGGTAGCGGG
66 ACTTAGGCATACAGAGTTCATTCCCA-GTCTAAGAT-CAGACGGACCGAGGGTTGTGGTAGCAGG
* * * ** * *
35248679 A-CCAGTAGCACGTAGAGACGAAGCAGGCTG
129 ATCGA-CAGCATGTAG-GGGGAACCA-GCCG
* * * * * * * * *
35248709 ATCCCCGGCTTACACATTATGCCTTTTCGGCCAGCTCAGGGCCCGCACGCTCGTTTCGTGGGTTG
1 ATCCCCGGCTTGCGCATTATACCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTG
* * *
35248774 ACTTATGCATACAGAGTTCATTCCCAGTGTAAGATCAGATCGGACCGAGGGTTGTGGTAGTAGGA
66 ACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGA-CGGACCGAGGGTTGTGGTAGCAGGA
* *
35248839 TTGACAGCATGTAGGGGGAACCGAGTCG
130 TCGACAGCATGTAGGGGGAACC-AGCCG
* * * * * *
35248867 ATCCTCGGCTTGCGCATTCTACCTCTCCGGTCGGTTGAGCACCTC-CACGCTCGTTTCGTGGGTT
1 ATCCCCGGCTTGCGCATTATACCTCTCCGGCCGGCTGAGCGCC-CGCACGCTCGTTTCATGGGTT
* *
35248931 GGCTTAGGCATACGGAGTTCATT-CCATGTCTAAG
65 GACTTAGGCATACAGAGTTCATTCCCA-GTCTAAG
35248965 CATACGCAGT
Statistics
Matches: 316, Mismatches: 88, Indels: 22
0.74 0.21 0.05
Matches are distributed among these distances:
157 8 0.03
158 188 0.59
159 116 0.37
160 4 0.01
ACGTcount: A:0.20, C:0.27, G:0.28, T:0.25
Consensus pattern (156 bp):
ATCCCCGGCTTGCGCATTATACCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTG
ACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACGGACCGAGGGTTGTGGTAGCAGGAT
CGACAGCATGTAGGGGGAACCAGCCG
Found at i:35248975 original size:26 final size:26
Alignment explanation
Indices: 35248938--35248990 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35248928 GTTGGCTTAG
*
35248938 GCATACGGAGTTCATTC-CATGTCTAA
1 GCATACGCAGTTCATTCTCA-GTCTAA
35248964 GCATACGCAGTTCATTCTCAGTCTAA
1 GCATACGCAGTTCATTCTCAGTCTAA
35248990 G
1 G
35248991 ATTTTGAGGC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGCAGTTCATTCTCAGTCTAA
Found at i:35253640 original size:26 final size:26
Alignment explanation
Indices: 35253602--35253654 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35253592 CCAATCTGAT
35253602 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
35253628 CTTAGAC-ATGGAATGAACTCTGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
35253654 C
1 C
35253655 CCAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:35253984 original size:159 final size:158
Alignment explanation
Indices: 35253627--35254065 Score: 472
Period size: 159 Copynumber: 2.8 Consensus size: 158
35253617 AACTCCGTAT
* * * *
35253627 GCTTAGACATGGAATGAACTCTGTATGCCCAAGCCAACCCACCAAACGAGCGTACGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCACTCAG
* * * ** * * *
35253692 TCGACCGGAGAGGTAGAATGCGTAAGCCGGGGATCAGCCCGGTCCCCCCTACGTGCTGTCAATCT
66 TCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGTTCGGTCCCCTCTGCGTGCTGTCAATCC
* *
35253757 TGCTGCCGCAACCCCCAGTCAGGTCTGA
131 CGCTGCCACAACCCCCAGTCAGGTCTGA
* * * * * *
35253785 TCTTAGAC-TGGGACTAAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCACTCA
* * * * **
35253849 GTCGACGGGAGAGGCATAATGCGCAAGCCAGGGATCGGTTTGGTGCCCCTCTGCGTGCTGTCGGT
65 GTCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGTTCGGT-CCCCTCTGCGTGCTGTCAAT
* *
35253914 CCCGCTGCCACAACCCTCAGTTC-GGT-TGGG
129 CCCGCTGCCACAACCCCCAG-TCAGGTCT-GA
* * * **
35253944 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTACAGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCACTCAG
* * * *
35254009 TC-AGCCAGAGAGGCAGAATGCGCAAGCTGGGGATCGGTTCAGTCCCCTCTGTGTGCT
66 TCGA-CCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGTTCGGTCCCCTCTGCGTGCT
35254066 ACCGATCTTG
Statistics
Matches: 228, Mismatches: 47, Indels: 12
0.79 0.16 0.04
Matches are distributed among these distances:
157 1 0.00
158 102 0.45
159 122 0.54
160 3 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCACTCAG
TCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGTTCGGTCCCCTCTGCGTGCTGTCAATCC
CGCTGCCACAACCCCCAGTCAGGTCTGA
Found at i:35254380 original size:15 final size:15
Alignment explanation
Indices: 35254360--35254390 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
35254350 CCACGAAACA
35254360 AGCGTACGGGCGCTC
1 AGCGTACGGGCGCTC
*
35254375 AGCGTACGGGTGCTC
1 AGCGTACGGGCGCTC
35254390 A
1 A
35254391 ACCGGCAGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.16, C:0.29, G:0.39, T:0.16
Consensus pattern (15 bp):
AGCGTACGGGCGCTC
Found at i:35254672 original size:691 final size:685
Alignment explanation
Indices: 35253627--35254886 Score: 1627
Period size: 691 Copynumber: 1.8 Consensus size: 685
35253617 AACTCCGTAT
*
35253627 GCTTAGACATGGAATGAACTCTGTATGCCCAAGCCAACCCACCAAACGAGCGTACGGGCACTCAG
1 GCTTAGACATGGAATGAACTCTGTATGCCCAAGCCAACCCACCAAACAAGCGTACGGGCACTCAG
* * *
35253692 TCGACCGGAGAGGTAGAATGCGTAAGCCGGGGATCAGCCCGGTCCCCCCTACGTGCTGTCAATCT
66 TCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCCTACGTGCTGTCAATCC
*
35253757 TGCTGCCGCAACCCCCAGTCAGGTCTGATCTTAGACTGGGACTAAACTCCGTATGCCTAAGTCAA
131 TGCTGCCGCAACCCCCAGTCAGGTCTGATCTTAGACTGGGAATAAACTCCGTATGCCTAAGTCAA
* * * * * * * *
35253822 CCCACGAAACGAGCGTGCAGGCACTGAGTCGACGGGAGAGGCATAATGCGCAAGCCAGGGATCGG
196 CCCACAAAACGAGCATGCAGGCACTGAGCCCACCGAAGAGGCATAACGCGCAAGCCAGGGATCGA
* * * * * * * *
35253887 TTTGGTGCCCCTCTGCGTGCTGTCGGTCCCGCTGCCACAACCCTCAGTTCGGTTGGGGCTTAGAC
261 CTCGGTGCCCCTCTGCATGCTGCCAGTCCCACTGCCACAACCCTCAGTCCGGCTGGGGCTTAGAC
* * * *
35253952 ATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTACAGGTGCTCAGTCAGCC-A
326 ATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAGGCGTACAGGCGCTCAGCCAACCGA
* ** * * * * * *
35254016 GAGAGGCAGAATGCGCAAGCTGGGGATCGGTTCAGTCCCCTCTGTGTGCTACCGATCTTGCTGCC
391 -AGAGGCAGAATGCGCAAGCCGGGGATCGGCCCAGTCCCCCCTGCGTACTACCGATCCTACTACC
** *
35254081 GTAACCCTCGGTTCAATCCGATCTTAGACTGGGAATGAACTCAATATGT-TTAGACTGGGGATGA
455 ACAACCCTCGGTCCAATCCGATCTTAGACTGGGAATGAACTCAATAT-TCTTAGACTGGGGATGA
* * * *
35254145 ACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCCCTCAGTCGGTCGAGGAGGCCAA
519 ACTCCGTATGCCCAAGTCAACCCAGGAAACGAGCGTACAGGCCCTCAGTCGGTCGAGGAGGCCAA
35254210 CCAAAGAAGCATAATGAGCAAGCCGGGGATCAACCTTGTCCCCTTCTGTGTGCTACCAATCCTGC
584 CCAAAGAAGCATAATGAGCAAGCCGGGGATCAACCTTGTCCCCTTCTGTGTGCTACCAATCCTGC
35254275 TGCCGGTCCTACTGCCACAACCCTCGGTCCGGCTGGG
649 TGCCGGTCCTACTGCCACAACCCTCGGTCCGGCTGGG
* * * *
35254312 GCTTAGATATGGAATGAACGTC-GTATGCCTAAGCCAACCCACGAAACAAGCGTACGGGCGCTCA
1 GCTTAGACATGGAATGAAC-TCTGTATGCCCAAGCCAACCCACCAAACAAGCGTACGGGCACTCA
* * * * *
35254376 G-CGTACGGGTGCTCAACCGGCAGAATGCGCAAGCTGGGGATC-GACTCGGTCCGCCCCTGCGTG
65 GTCG-ACCGGAG----A--GGCAGAATGCGCAAGCCGGGGATCAG-CCCGGTCC-CCCCTACGTG
* ** *** * *
35254439 CTGTCGATCCTGCTG-CGTGACCCTTGGTCTA-GTTTGATCTTAGACTGGGAATGAACTCCGTAT
121 CTGTCAATCCTGCTGCCGCAACCCCCAGTC-AGGTCTGATCTTAGACTGGGAATAAACTCCGTAT
* * * **
35254502 GCTTAAGTTAACCCACAAAACGAGCATGCGGGCGTTGAGCCCACCGAAGAGGCATAACGCGCAAG
185 GCCTAAGTCAACCCACAAAACGAGCATGCAGGCACTGAGCCCACCGAAGAGGCATAACGCGCAAG
* * **
35254567 CCAGGGATCGACTCGGT-CCCGCTCTGCATGCTGCCAGTCCCACTGCCAGAACTCTTGGTCCGGC
250 CCAGGGATCGACTCGGTGCCC-CTCTGCATGCTGCCAGTCCCACTGCCACAACCCTCAGTCCGGC
* *
35254631 TGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATAGGCGTGCAGGCGC
314 TGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAGGCGTACAGGCGC
* *
35254696 TCAGCCAACCGAAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTACTACCG
379 TCAGCCAACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCAGTCCCCCCTGCGTACTACCG
* * * * * *
35254761 ATCCTACTATCACAACCCTCGGTCCGATCTGATCTTAGATTGGGAATGAACTCCATATTCTTAGC
444 ATCCTACTACCACAACCCTCGGTCCAATCCGATCTTAGACTGGGAATGAACTCAATATTCTTAGA
* *
35254826 CTGGGGATGAACTCCGTATGCCCAAGTCAACCCAGGAAACGAGCGTGCAGGCGCTCAGTCG
509 CTGGGGATGAACTCCGTATGCCCAAGTCAACCCAGGAAACGAGCGTACAGGCCCTCAGTCG
35254887 ATCAGAAAGG
Statistics
Matches: 482, Mismatches: 79, Indels: 22
0.83 0.14 0.04
Matches are distributed among these distances:
684 2 0.00
685 62 0.13
686 2 0.00
689 1 0.00
690 5 0.01
691 386 0.80
692 24 0.05
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (685 bp):
GCTTAGACATGGAATGAACTCTGTATGCCCAAGCCAACCCACCAAACAAGCGTACGGGCACTCAG
TCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCCTACGTGCTGTCAATCC
TGCTGCCGCAACCCCCAGTCAGGTCTGATCTTAGACTGGGAATAAACTCCGTATGCCTAAGTCAA
CCCACAAAACGAGCATGCAGGCACTGAGCCCACCGAAGAGGCATAACGCGCAAGCCAGGGATCGA
CTCGGTGCCCCTCTGCATGCTGCCAGTCCCACTGCCACAACCCTCAGTCCGGCTGGGGCTTAGAC
ATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAGGCGTACAGGCGCTCAGCCAACCGA
AGAGGCAGAATGCGCAAGCCGGGGATCGGCCCAGTCCCCCCTGCGTACTACCGATCCTACTACCA
CAACCCTCGGTCCAATCCGATCTTAGACTGGGAATGAACTCAATATTCTTAGACTGGGGATGAAC
TCCGTATGCCCAAGTCAACCCAGGAAACGAGCGTACAGGCCCTCAGTCGGTCGAGGAGGCCAACC
AAAGAAGCATAATGAGCAAGCCGGGGATCAACCTTGTCCCCTTCTGTGTGCTACCAATCCTGCTG
CCGGTCCTACTGCCACAACCCTCGGTCCGGCTGGG
Found at i:35255544 original size:26 final size:26
Alignment explanation
Indices: 35255506--35255558 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
35255496 GGCTCAAAAT
35255506 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
35255532 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
35255558 C
1 C
35255559 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:35255902 original size:158 final size:156
Alignment explanation
Indices: 35255531--35255958 Score: 459
Period size: 158 Copynumber: 2.7 Consensus size: 156
35255521 AACTCCGTAT
*
35255531 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCATGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAG
* ** * * * * * **
35255596 CCGACCGGAGAGATAGAATGCGCAAGCCAGGGATCGGCCCAATCCCCCTGTGTGCTGTTGATCTT
66 CCGATCGGAGAGGCAGAATGCGCAAGCCGGGGAT-AGCCTAGTCCCCCTGTGTGCTGTCGATCCC
* * *
35255661 GCTGCCACAACCCTCGGTCCAATCTGA
130 GCTACCACAACCCTCGGTCCAAGCGGA
* * * * * *
35255688 TCTTAGAC-TGGGAATGAACTCTGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGCTAA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCA
* * * *
35255752 GCCGATCGAAGTGGCATAATGCGCAAGCCGGGGATAGACCTAGTCCCCTTCTGTGTGCTG-CGGT
65 GCCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATAG-CCTAGTCCCC--CTGTGTGCTGTCGAT
* * *
35255816 CCCGCTACCACAACCCTCGGTGC-GGCAGGG
127 CCCGCTACCACAACCCTCGGTCCAAGC-GGA
* * * *
35255846 GCTTAGACATGGAATGAACTCCCTATGCCTGAGCCAACCCATGAAATGAGCATGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAG
* *
35255911 CC-AGTCGGAGAGGCAGAATGCGCAAGCCGAGGATCAGCCTGGTCCCCC
66 CCGA-TCGGAGAGGCAGAATGCGCAAGCCGGGGAT-AGCCTAGTCCCCC
35255959 CTACGTGCTA
Statistics
Matches: 221, Mismatches: 42, Indels: 17
0.79 0.15 0.06
Matches are distributed among these distances:
156 3 0.01
157 93 0.42
158 112 0.51
159 13 0.06
ACGTcount: A:0.25, C:0.30, G:0.28, T:0.18
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAG
CCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATAGCCTAGTCCCCCTGTGTGCTGTCGATCCCG
CTACCACAACCCTCGGTCCAAGCGGA
Found at i:35256046 original size:26 final size:26
Alignment explanation
Indices: 35256017--35256069 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35256007 CCGATCCGAT
35256017 CTTAGAC-TAGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
35256043 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCCGTATG
35256069 C
1 C
35256070 CCAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:35256612 original size:26 final size:26
Alignment explanation
Indices: 35256583--35256635 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
35256573 CCGGTCCGAT
35256583 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
35256609 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
35256635 C
1 C
35256636 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:35258220 original size:26 final size:26
Alignment explanation
Indices: 35258169--35258221 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
35258159 CCGGTCCGAT
*
35258169 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
35258195 CTTAGACT-GGAGATGAACTCCGTATG
1 CTTAGACTGGGA-ATGAACTCCATATG
35258221 C
1 C
35258222 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 3 0.12
26 21 0.88
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:35260275 original size:26 final size:26
Alignment explanation
Indices: 35260224--35260275 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
35260214 GGCTCAAAAT
*
35260224 CTTAGAATGGGAATGAACACCGTATG
1 CTTAGAATGGGAATGAACACCATATG
*
35260250 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGA-ATGGGAATGAACACCATATG
35260276 ACTAAGCCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.35, C:0.17, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACACCATATG
Found at i:35260616 original size:170 final size:171
Alignment explanation
Indices: 35260249--35260617 Score: 428
Period size: 171 Copynumber: 2.2 Consensus size: 171
35260239 AACACCGTAT
* * *
35260249 GCTTAGACAT-GGAATGAACTCCATATGACTAAGCCAACCCACGAAATCAGCGTGTGGGCGCTCA
1 GCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATCAGCGTGTAGGCGCTCA
* * * * *
35260313 TCCGGTCGGAAAGGCATAATGCCCAAGCCGGGGATCAGCCCGGTCCCCCTCTGCATGCTATCGAT
65 ACCGGTCCGAAAGGCAGAATGCCCAAGCCAGGGATCAGCCCGGTCCCCCTCTACATGCTATCGAT
* * *
35260378 CCTGCTGCCGGTCTTGCTGCCACAACCCTTGATCCGACTGGG
130 CCTGCTGCCGGTCTTACTGCCACAACCCTCGATCCGACTGGA
* *
35260420 GCTTAGAC-GTGGAATGAACTCCGTATGCCTAAGCCAATCCACGAAATGAGCGTGTAGGCGCTCA
1 GCTTAGACTG-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATCAGCGTGTAGGCGCTCA
** ** *
35260484 ACCGG-CCGAAGAGTTAGAATGCTTAAGCCAGGGATC-GTCCCGGTCCCCC-CTACATGCTGTCG
65 ACCGGTCCGAA-AGGCAGAATGCCCAAGCCAGGGATCAG-CCCGGTCCCCCTCTACATGCTATCG
* ** *
35260546 ATCCTGCTGCTGGTGC-TACTGCTGCAACCCTCGATCCAGTCT-GA
128 ATCCTGCTGCCGGT-CTTACTGCCACAACCCTCGATCC-GACTGGA
*
35260590 TCTTAGACTGGGAATGAACTCCGTATGC
1 GCTTAGACTGGGAATGAACTCCGTATGC
35260618 TTAGACATGG
Statistics
Matches: 168, Mismatches: 23, Indels: 15
0.82 0.11 0.07
Matches are distributed among these distances:
170 72 0.43
171 96 0.57
ACGTcount: A:0.22, C:0.30, G:0.26, T:0.21
Consensus pattern (171 bp):
GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATCAGCGTGTAGGCGCTCAA
CCGGTCCGAAAGGCAGAATGCCCAAGCCAGGGATCAGCCCGGTCCCCCTCTACATGCTATCGATC
CTGCTGCCGGTCTTACTGCCACAACCCTCGATCCGACTGGA
Found at i:35260629 original size:26 final size:26
Alignment explanation
Indices: 35260591--35260643 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
35260581 CCAGTCTGAT
35260591 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35260617 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
35260643 C
1 C
35260644 CTAAGCCAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35261118 original size:158 final size:157
Alignment explanation
Indices: 35260739--35261118 Score: 401
Period size: 159 Copynumber: 2.4 Consensus size: 157
35260729 CTTCGTTCTA
* *
35260739 TCGATCCTACTACCACAACCCTCGATCCAGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCT
1 TCGATCCTACTGCCACAACCCTCGGTCC-GTCTGATCTTAGACTGGGAATGAACTCTGTATGCCT
* ** * * * *
35260804 AAGTCAACCCACGAAAAGAGCATGTGGGCACTGAGCCGACCGGAGAGGCATAATGTGCAAGTCAG
65 AAGCCAACAAACGAAAAGAGCATGCGGGCACTCAGCCGACCGGAGAGGCAAAATGCGCAAGTCAG
35260869 GGATCGATCCGATCCCCCTCTACGTGCTG
130 GGATCGATCCGATCCCCCTCTA-GTGCTG
* * * * * ** **
35260898 CCGGTCCCACTGCCACAACCCTCAGTCCGACTGGGGCTTAGACAT-GGAATGAACTCCCTATGCC
1 TCGATCCTACTGCCACAACCCTCGGTCCGTCT-GATCTTAGAC-TGGGAATGAACTCTGTATGCC
* * * *
35260962 TAAGCCAACAAAC-AAAACGGGCATGCGGGCGCTCAGCC-AGTCGGAGAGGCAAAATGCGTAAG-
64 TAAGCCAACAAACGAAAA-GAGCATGCGGGCACTCAGCCGA-CCGGAGAGGCAAAATGCGCAAGT
* * * *
35261024 CTGAGGATCGATCTGGTCCCTCCTGT-GTGCTG
127 CAG-GGATCGATCCGATCCC-CCTCTAGTGCTG
*
35261056 TCGATCCTGCTGCCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGC
1 TCGATCCTACTGCCACAACCCTCGGTCC-GTCTGATCTTAGACTGGGAATGAACTCTGTATGC
35261119 TTAGACTGGG
Statistics
Matches: 177, Mismatches: 36, Indels: 17
0.77 0.16 0.07
Matches are distributed among these distances:
157 1 0.01
158 63 0.36
159 108 0.61
160 5 0.03
ACGTcount: A:0.24, C:0.30, G:0.25, T:0.21
Consensus pattern (157 bp):
TCGATCCTACTGCCACAACCCTCGGTCCGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTA
AGCCAACAAACGAAAAGAGCATGCGGGCACTCAGCCGACCGGAGAGGCAAAATGCGCAAGTCAGG
GATCGATCCGATCCCCCTCTAGTGCTG
Found at i:35261121 original size:26 final size:26
Alignment explanation
Indices: 35261092--35261142 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
35261082 CCGGTCTGAT
*
35261092 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
35261118 CTTAGACTGGGGATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
35261143 ACCTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35261551 original size:676 final size:676
Alignment explanation
Indices: 35260616--35261871 Score: 1679
Period size: 676 Copynumber: 1.9 Consensus size: 676
35260606 AACTCCGTAT
* * *
35260616 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAACCATAGAATGAAGGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCAGTATGCCTAAGCCAAACCAGAGAATGAACGTACGGGCGCTCAG
** * * * *
35260681 CCGGTCGGAGAGGCAGAATGCACAAGCCAGAGACTGGCCCGGTCCCCCCTTCGTTCTATCGATCC
66 CCGACCGGAGAGGCAGAATGCACAAGCCAGAGACTGGCCCAGTCCCCCCTGCATGCTATCGATCC
* *
35260746 TACTACCACAACCCTCGATCCAGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAA
131 TACTACCACAACCCTCGATCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAA
* * *
35260811 CCCACGAAAAGAGCATGTGGGCACTGAGCCGACCGGAGAGGCATAATGTGCAAGTCAGGGATCGA
196 CCCACGAAAAGAG-ATGTGGGCACTGAGCAGACCGAAGAGGCATAATGCGCAAGTCAGGGATCGA
* **
35260876 TCC-GATCCCCCTCTACGTGCTGCCGGTCCCACTGCCACAACCCTCAGTCCGACTGGGGCTTAGA
260 -CCTGATCCCCCTCTACGTGCTACCAATCCCACTGCCACAACCCTCAGTCCGACTGGGGCTTAGA
*
35260940 CATGGAATGAACTCCCTATGCCTAAGCCAACAAACAAAACGGGCATGCGGGCGCTCAGCC-AGTC
324 CATGGAATGAACTCCCTATGCCTAAGCCAACAAACAAAACGGGCATGCGGGCGCTCAGCCGA-CC
* * * * **
35261004 GGAGAGGCAAAATGCGTAAGCTGAGGATC-GATCTGGTCCCTCCTGTGTGCTGTCGATCCTGCTG
388 AGAGAGGCAAAATGCGCAAGCCGAGGATCGGCTC-GGTCCCTCCTGCATGCTGTCGATCCTGCTG
* * * * * *
35261068 CCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATG
452 CCACAACCCTCGGTCCGATCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGAATGAGGATG
* **
35261133 AACTCCGTATACCTAAGTCAACCCACGAAATGAGAGTGCGAGCGCTCAGTCGGTCGGAGAGGCCA
517 AACTCCGTATACCTAAGTCAACCCACGAAATAAGAGTGCGAGCGCTCAACCGGTCGGAGAGGCCA
35261198 GGCATAATGTGCAAGTCGGGGATCAGCCTGGTCCCCCTCTACGTGCTACCAATCCCGCTGTCGGT
582 GGCATAATGTGCAAGTCGGGGATCAGCCTGGTCCCCCTCTACGTGCTACCAATCCCGCTGTCGGT
35261263 GCTGCTACAAAAACCCTTGGTCCGGCTGGG
647 GCTGCTACAAAAACCCTTGGTCCGGCTGGG
* *
35261293 GCTTAGACATGGAATGAACTCAGTATGCCTAAGCCAACCCACGA-AATGAACGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCAGTATGCCTAAGCCAAACCA-GAGAATGAACGTACGGGCGCTCA
* * ** *
35261357 GTCGACCGGAGAGGTAGAATGTGCAAGCC-GGGTA-TCGGCCCAGT-CCCCCTGCATGCTATCGA
65 GCCGACCGGAGAGGCAGAATGCACAAGCCAGAG-ACT-GGCCCAGTCCCCCCTGCATGCTATCGA
* * ** *
35261419 TCTTGCTGTCGCAACCCTCGATCC-GATCCT-ATCTTAGACTGGGAATGAACTCCGTATGCATAA
128 TCCTACTACCACAACCCTCGATCCAG-T-CTGATCTTAGACTGGGAATGAACTCCGTATGCATAA
* * *
35261482 GTCAACCCATGAAAAGAG-TGTTCGGGCACTGGGCAGGCCGAAGAGGCATAATGCGCAAGTC-GA
191 GTCAACCCACGAAAAGAGATG-T-GGGCACTGAGCAGACCGAAGAGGCATAATGCGCAAGTCAG-
* ** ** * *
35261545 GGATCGACCTGGTCCCCCTCTGTGTGCTACCAATCCTGCTGCCACAACCCTCAGTTCGGCTGGGG
253 GGATCGACCTGATCCCCCTCTACGTGCTACCAATCCCACTGCCACAACCCTCAGTCCGACTGGGG
** *
35261610 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGCGCTCAGC
318 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACAAACAAAACGGGCATGCGGGCGCTCAGC
* * * * *
35261675 CGACCAGAGAGGCAGAATGTGCAAGCCGGGGATCGGCTCGGTCCCTCTTGCATGCTGTCGATCTT
383 CGACCAGAGAGGCAAAATGCGCAAGCCGAGGATCGGCTCGGTCCCTCCTGCATGCTGTCGATCCT
* * *
35261740 GCTGTCGCAACCCTTGGTCCGATCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGAATGAG
448 GCTGCCACAACCCTCGGTCCGATCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGAATGAG
* * * * * *
35261805 GATGAACTCCGTATGCCTAAGTCAACCCATGAAATAAGTGTGCGGGTGCTCAACCGGTTGGAGAG
513 GATGAACTCCGTATACCTAAGTCAACCCACGAAATAAGAGTGCGAGCGCTCAACCGGTCGGAGAG
35261870 GC
578 GC
35261872 ATAATGTGTG
Statistics
Matches: 496, Mismatches: 72, Indels: 23
0.84 0.12 0.04
Matches are distributed among these distances:
674 2 0.00
675 5 0.01
676 394 0.79
677 94 0.19
678 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (676 bp):
GCTTAGACATGGAATGAACTCAGTATGCCTAAGCCAAACCAGAGAATGAACGTACGGGCGCTCAG
CCGACCGGAGAGGCAGAATGCACAAGCCAGAGACTGGCCCAGTCCCCCCTGCATGCTATCGATCC
TACTACCACAACCCTCGATCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAA
CCCACGAAAAGAGATGTGGGCACTGAGCAGACCGAAGAGGCATAATGCGCAAGTCAGGGATCGAC
CTGATCCCCCTCTACGTGCTACCAATCCCACTGCCACAACCCTCAGTCCGACTGGGGCTTAGACA
TGGAATGAACTCCCTATGCCTAAGCCAACAAACAAAACGGGCATGCGGGCGCTCAGCCGACCAGA
GAGGCAAAATGCGCAAGCCGAGGATCGGCTCGGTCCCTCCTGCATGCTGTCGATCCTGCTGCCAC
AACCCTCGGTCCGATCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGAATGAGGATGAACT
CCGTATACCTAAGTCAACCCACGAAATAAGAGTGCGAGCGCTCAACCGGTCGGAGAGGCCAGGCA
TAATGTGCAAGTCGGGGATCAGCCTGGTCCCCCTCTACGTGCTACCAATCCCGCTGTCGGTGCTG
CTACAAAAACCCTTGGTCCGGCTGGG
Found at i:35261718 original size:159 final size:155
Alignment explanation
Indices: 35261285--35261730 Score: 410
Period size: 159 Copynumber: 2.8 Consensus size: 155
35261275 ACCCTTGGTC
* * *
35261285 CGGCTGGGGCTTAGACATGGAATGAACTCAGTATGCCTAAGCCAACCCACGAAATGAACGTGCGG
1 CGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAAGAGCGTGCGG
* * * *
35261350 GCGCTCAGTCGACCGGAGAGGTAGAATGTGCAAGCCGGGTATCGGCCCAGT-CCCCCTGCATGCT
66 GCGCTCAGCCGACC-GAGAGGCAGAATGTGCAAGCCGGGGATCGG-CCGGTCCCCCCTGCATGCT
* * * * *
35261414 ATCGATCTTGCTGTCGCAACCCTCGAT
129 ACCAATCCTGCTGCCACAACCCTCGAT
* * **** * * * * *
35261441 CCGATCCTATCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAAAGAGTGTTC
1 CGGCT-GGGGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAAGAGCGTGC
* ** * * * * * * * **
35261505 GGGCACTGGGCAGGCCGAAGAGGCATAATGCGCAAGTCGAGGATCGACCTGGTCCCCCTCTGTGT
64 GGGCGCTCAGCCGACCG-AGAGGCAGAATGTGCAAGCCGGGGATCGGCC-GGTCCCCC-CTGCAT
*
35261570 GCTACCAATCCTGCTGCCACAACCCTCAGTT
126 GCTACCAATCCTGCTGCCACAACCCTC-GAT
* * * *
35261601 CGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGG
1 CGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAAGAGCGTGCGG
* *
35261666 GCGCTCAGCCGACCAGAGAGGCAGAATGTGCAAGCCGGGGATCGGCTCGGTCCCTCTTGCATGCT
66 GCGCTCAGCCGACC-GAGAGGCAGAATGTGCAAGCCGGGGATCGGC-CGGTCCCCCCTGCATGCT
35261731 GTCGATCTTG
Statistics
Matches: 215, Mismatches: 65, Indels: 18
0.72 0.22 0.06
Matches are distributed among these distances:
156 7 0.03
157 78 0.36
158 10 0.05
159 112 0.52
160 8 0.04
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.19
Consensus pattern (155 bp):
CGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAAGAGCGTGCGG
GCGCTCAGCCGACCGAGAGGCAGAATGTGCAAGCCGGGGATCGGCCGGTCCCCCCTGCATGCTAC
CAATCCTGCTGCCACAACCCTCGAT
Found at i:35261966 original size:26 final size:26
Alignment explanation
Indices: 35261928--35261980 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
35261918 GGCTCAAAAT
35261928 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35261954 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
35261980 C
1 C
35261981 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35262220 original size:26 final size:26
Alignment explanation
Indices: 35262191--35262273 Score: 132
Period size: 26 Copynumber: 3.2 Consensus size: 26
35262181 CGAAGAGGCA
*
35262191 TATGCTTAGACATGGAATGAAGTCCG
1 TATGCTTAGACATGGAATGAACTCCG
35262217 TATGCTTAGAC-TGGGAATGAACTCCG
1 TATGCTTAGACAT-GGAATGAACTCCG
*
35262243 TATGCTTAGACATGGAATGAACTCCA
1 TATGCTTAGACATGGAATGAACTCCG
35262269 TATGC
1 TATGC
35262274 CTAAGCCAAC
Statistics
Matches: 53, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
25 1 0.02
26 51 0.96
27 1 0.02
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (26 bp):
TATGCTTAGACATGGAATGAACTCCG
Found at i:35262746 original size:26 final size:26
Alignment explanation
Indices: 35262717--35262769 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
35262707 CTGATCCGAT
35262717 CTTAGACTT-GGAATGAACTCTGTATG
1 CTTAGA-TTGGGAATGAACTCTGTATG
35262743 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGATTGGGAATGAACTCTGTATG
35262769 C
1 C
35262770 CTAAGTCAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 2 0.08
26 24 0.92
ACGTcount: A:0.26, C:0.15, G:0.25, T:0.34
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTCTGTATG
Found at i:35263563 original size:26 final size:26
Alignment explanation
Indices: 35263512--35263564 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
35263502 CTGGTCCGAT
*
35263512 CTTAAACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCATATG
* * *
35263538 CTTAGACTGGGAGTGAACTTCATATG
1 CTTAAACTGGGAATGAACTCCATATG
35263564 C
1 C
35263565 CTAAGTCAAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCATATG
Done.