Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 389 of 402
Found at i:35263767 original size:795 final size:794
Alignment explanation
Indices: 35262572--35264030 Score: 2141
Period size: 795 Copynumber: 1.8 Consensus size: 794
35262562 GCTCAGACAT
* *
35262572 GGAATGAACTCCCTATGAAGCCAACCCACAAAACGGGCGTGCGGGTGCTCAGTCGGCCAGAGAGG
1 GGAATGAAATCCCTATGAAGCCAACCCACAAAACGGGCGTGCGGGCGCTCAGTCGGCCAGAGAGG
* * * * *
35262637 TAGAATGCGCAAGCCGGGGATCGGCTCGGTCCCCCCGCGTGCTGTCGATCCTATTGTCACAACCC
66 TAGAATGCGCAAGCCGAGGATCGGCCCAGTCCCCCCACGTGCTGCCGATCCTATTGTCACAACCC
* * * * *
35262702 TCGGTCTGATCCGATCTTAGACTTGGAATGAACTCTGTATGCTTAGATTGGGAATGAACTCTGTA
131 TCGGTCTGATCCGATCTTAAACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTATA
* ** * *
35262767 TGCCTAAGTCAATGCATGAAACGAGCGCACCTGTGTGCTGCCGATCCCGATGCTGGTCCTACTGC
196 TGCCTAAGTCAATGCATGAAACGAGCACACCTACGTGCTGCCGATCCCGATGCCGATCCTACTGC
* * *
35262832 CACAACCCTCTGTTCGACTGGGGCTTAGATATTGAATGAACTCCGTATGCCTAAGCCAACCTATG
261 CACAACCCTCTGTTCGACTGGGGCTTAGATATGGAATGAACTCCATATGCCTAAGCCAACCCATG
** ** *
35262897 AAATGAGCGTGCGGGTGCTCAGTCGGTCGAAGAGGCAGAATGCGCAAGTCAGGGATTGGCCCGAT
326 AAACAAGCGTGCGGGTGCTCAACCGGTCGAAGAGGCAGAATGCGCAAGTCAGGGATCGGCCCGAT
* *
35262962 CCCCCCTACGTGCTGTCAATCCTGCTGCTGGTCCTGCTGCCACAACCCTCGGTCCGATCCGATCT
391 CCCCCCTACGTGCTGTCAATCCTACTGCTGGTCCTGCTGCCACAACCCTCGATCCGATCCGATCT
* *
35263027 TAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCAT
456 TAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAC
* * * * * * * *
35263092 GAAACGAGCATGCGGGAGCTCAACTGGCTGGAGAGGTAGAATGTGTAAGCCAGGGATCGACCTGA
521 AAAACGAGCATGCGGGAGCTCAACCGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGA
* * * * * * *
35263157 TTCCCTCTACGTGCTGTTGATCCTGCTACTGCAACCCTCGGTTCGATCTGATCTTAGACTGGGAA
586 TTCCCTCTACGTGCTATCGATCCTGCTACCGCAACCCTCGATCCGATCTAATCTTAGACTAGGAA
35263222 TGAACTCCGTATGCCTATGTCAACCCACGAAACGAACGTATGGTGCTCAGTCGATCGGAGAGGCA
651 TGAACTCCGTATGCCTATGTCAACCCACGAAACGAACGTATGGTGCTCAGTCGATCGGAGAGGCA
35263287 GAATGCGCTAGCTGGGGATCGGATTGATTCACTGTCGATCCTACTGTTGCAACCCTCAGTTTGAT
716 GAATGCGCTAGCTGGGGATCGGATTGATTCACTGTCGATCCTACTGTTGCAACCCTCAGTTTGAT
35263352 CTAATCTTAGACTG
781 CTAATCTTAGACTG
* *
35263366 GGAATGAAATCCCTATGAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAGTCGGCCGGAGAGG
1 GGAATGAAATCCCTATGAAGCCAACCCACAAAACGGGCGTGCGGGCGCTCAGTCGGCCAGAGAGG
* * * * * **
35263431 TAGAATGTGCAAGCTGAGGATCGGCCCAGTCGCCCCTACGTGCTGCCGATCCTGTTGTCGCAATG
66 TAGAATGCGCAAGCCGAGGATCGGCCCAGTC-CCCCCACGTGCTGCCGATCCTATTGTCACAACC
* * *
35263496 CTTGGTCTGGTCCGATCTTAAACTGGGAATGAACTCCGTATGCTTAGACTGGGAGTGAACT-TCA
130 CTCGGTCTGATCCGATCTTAAACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCT-A
* * *
35263560 TATGCCTAAGTCAATGCATGAAACGAGCACGCCTACGTGCTGTCGATCCCGATGCCGATCCTGCT
194 TATGCCTAAGTCAATGCATGAAACGAGCACACCTACGTGCTGCCGATCCCGATGCCGATCCTACT
35263625 GCCACAACCCT-TGGTTCGACTGGGGCTTAGATATGGAATGAACTCCATATGCCTAAGCCAACCC
259 GCCACAACCCTCT-GTTCGACTGGGGCTTAGATATGGAATGAACTCCATATGCCTAAGCCAACCC
* * * *
35263689 GTGAAACAAGCGTGTGGGTGCTCAACCGG-CTGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCC
323 ATGAAACAAGCGTGCGGGTGCTCAACCGGTC-GAAGAGGCAGAATGCGCAAGTCAGGGATCGGCC
* * * * ** * * *
35263753 TGATCCCTCCTACGTGCTGTCGATCTTACTGCTGGTTTTGCTGCCATAACCTTCGATCCGATCTG
387 CGATCCCCCCTACGTGCTGTCAATCCTACTGCTGGTCCTGCTGCCACAACCCTCGATCCGATCCG
35263818 ATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
452 ATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
* ** * * * *
35263883 CCACAAAATGAGTGTGCGGGTGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGC
517 CCACAAAACGAGCATGCGGGAGCTCAACCGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCGAC
*
35263948 CCGATTCCTTCTACGTGCTATCGATCCTGCTACCGCAACCCTCGATCCGATCTAATCTTAGACTA
582 CCGATTCCCTCTACGTGCTATCGATCCTGCTACCGCAACCCTCGATCCGATCTAATCTTAGACTA
35264013 GGAATGAACTCCGTATGC
647 GGAATGAACTCCGTATGC
35264031 TTAGACTGGG
Statistics
Matches: 581, Mismatches: 80, Indels: 7
0.87 0.12 0.01
Matches are distributed among these distances:
794 90 0.15
795 491 0.85
ACGTcount: A:0.23, C:0.27, G:0.27, T:0.23
Consensus pattern (794 bp):
GGAATGAAATCCCTATGAAGCCAACCCACAAAACGGGCGTGCGGGCGCTCAGTCGGCCAGAGAGG
TAGAATGCGCAAGCCGAGGATCGGCCCAGTCCCCCCACGTGCTGCCGATCCTATTGTCACAACCC
TCGGTCTGATCCGATCTTAAACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTATA
TGCCTAAGTCAATGCATGAAACGAGCACACCTACGTGCTGCCGATCCCGATGCCGATCCTACTGC
CACAACCCTCTGTTCGACTGGGGCTTAGATATGGAATGAACTCCATATGCCTAAGCCAACCCATG
AAACAAGCGTGCGGGTGCTCAACCGGTCGAAGAGGCAGAATGCGCAAGTCAGGGATCGGCCCGAT
CCCCCCTACGTGCTGTCAATCCTACTGCTGGTCCTGCTGCCACAACCCTCGATCCGATCCGATCT
TAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAC
AAAACGAGCATGCGGGAGCTCAACCGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGA
TTCCCTCTACGTGCTATCGATCCTGCTACCGCAACCCTCGATCCGATCTAATCTTAGACTAGGAA
TGAACTCCGTATGCCTATGTCAACCCACGAAACGAACGTATGGTGCTCAGTCGATCGGAGAGGCA
GAATGCGCTAGCTGGGGATCGGATTGATTCACTGTCGATCCTACTGTTGCAACCCTCAGTTTGAT
CTAATCTTAGACTG
Found at i:35263858 original size:26 final size:26
Alignment explanation
Indices: 35263820--35263872 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35263810 CCGATCTGAT
35263820 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
35263846 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
35263872 C
1 C
35263873 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:35264033 original size:26 final size:26
Alignment explanation
Indices: 35264004--35264056 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
35263994 CCGATCTAAT
35264004 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* * *
35264030 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
35264056 C
1 C
35264057 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:35267869 original size:317 final size:315
Alignment explanation
Indices: 35267393--35268153 Score: 819
Period size: 317 Copynumber: 2.4 Consensus size: 315
35267383 TCCCACTACG
* * ** * * *
35267393 CACAACCCTCTGTCCGGCTAAGGATTAGACATGGAATGAAACTCCTTATGCCTAAGCCAACCCAT
1 CACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATG-AACTCCCTATACCTAAGCCAACCCAT
* * * *
35267458 GAAACGAGCGT-CGCGGTATGCTCAGACGACGCAGAAGGTAGACATGCGCATA-TAGGGGATCAG
65 GAAATGAGCGTGCG-GGCA--CTCAG-CGACG-AG-AGGTAGA-ATGCACA-AGTTGGGGATCAG
* * * *
35267521 CCAGGTCCCCCCCTGTGTGCTGTCAATCCTGCTGCTGCAACCCTTGGTCCAGTCTAATATTAGAC
122 CCAGGTCCCCCCCTGTGTGCTGTCAATCCTGCTGCCGCAACCCTCGATACAGTCTAATATTAGAC
* * *
35267586 TGGGATTGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTACGGGCACTGAACCGGTTGA
187 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCATACGGGCACTGAACCGGCTGA
* * * * * *
35267651 AGAGGCACAATACGCAAGTAGAGGACCGACCCAATCCCCTTCTGTGTGCTGTC-GATCCTGCTGC
252 AGAGGCACAACACGCAAGCAGAGGACCAACCCAATCCCCCTCTGCGTGCTGTCAG-TCCTGCTGA
** * * * * *
35267715 CATGACCTTC-GATCCGGCTGGGGCTTAGACATGGAATGAACTTCGTATACCTAAGCCAACCGAT
1 CACAACCCTCAG-TCCGACTGGGGCTTAGACATGGAATGAACTCCCTATACCTAAGCCAACCCAT
* *
35267779 GAAATGAGCGTGCGGGCACTCAGCTGGTCGAGAGGTAGAATGCACAAGTTGGGGATCAGCCTGGT
65 GAAATGAGCGTGCGGGCACTCAGC--GACGAGAGGTAGAATGCACAAGTTGGGGATCAGCCAGGT
* * * * *
35267844 CCCCCCCTGTGTGCTGTCGATCCTGCTGCCGTAACCCTCGATACGGTCTGATCTTAGACTGGGAA
128 CCCCCCCTGTGTGCTGTCAATCCTGCTGCCGCAACCCTCGATACAGTCTAATATTAGACTGGGAA
* ** * *
35267909 TGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCATGCGGGCGTTGAGCCGGCTGGAGAGGC
193 TGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCATACGGGCACTGAACCGGCTGAAGAGGC
* * * * * **
35267974 ATAACGCGTAAGCCGAGGATCAACCCTGTCCCCCTCTGCGTGCTGTCAGTCCTGCTGA
258 ACAACACGCAAGCAGAGGACCAACCCAATCCCCCTCTGCGTGCTGTCAGTCCTGCTGA
* *
35268032 CACAACCCTCAGTCCGATTGGGGCTTAGACATGGAATGAACTCCCTATACCTAAGCCAACCCACG
1 CACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATACCTAAGCCAACCCATG
* * * * * * *
35268097 AAATGAGCATGCGGGCGCTTAGCCAGCCGGAGAGGCAGAATGCATAAGTTAGGGATC
66 AAATGAGCGTGCGGGCACTCAG-C-GAC-GAGAGGTAGAATGCACAAGTTGGGGATC
35268154 GGTCCGTCCC
Statistics
Matches: 367, Mismatches: 63, Indels: 22
0.81 0.14 0.05
Matches are distributed among these distances:
316 1 0.00
317 252 0.69
318 36 0.10
319 7 0.02
320 3 0.01
321 36 0.10
322 32 0.09
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.20
Consensus pattern (315 bp):
CACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATACCTAAGCCAACCCATG
AAATGAGCGTGCGGGCACTCAGCGACGAGAGGTAGAATGCACAAGTTGGGGATCAGCCAGGTCCC
CCCCTGTGTGCTGTCAATCCTGCTGCCGCAACCCTCGATACAGTCTAATATTAGACTGGGAATGA
ACTCCGTATGCCTAAGTCAACCCACAAAATGAGCATACGGGCACTGAACCGGCTGAAGAGGCACA
ACACGCAAGCAGAGGACCAACCCAATCCCCCTCTGCGTGCTGTCAGTCCTGCTGA
Found at i:35267900 original size:158 final size:158
Alignment explanation
Indices: 35267417--35267953 Score: 478
Period size: 158 Copynumber: 3.4 Consensus size: 158
35267407 CGGCTAAGGA
* ** * *
35267417 TTAGACAT-GGAATGAAACTCCTTATGCCTAAGCCAACCCATGAAACGAGCGT-CGCGGTATGCT
1 TTAGAC-TGGGAATG-AACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTGCG-GGCA--CT
* *
35267480 CAGAC-GACGCAGAAGGTAGACATGCGCATA-TAGGGGATCAGCCAGGTCCCCCCCTGTGTGCTG
61 CAG-CGGTCGAAG-AGGTAGA-ATGCGCA-AGTAGGGGATCAGCCAGGTCCCCCCCTGTGTGCTG
* * * * * * * *
35267543 TCAATCCTGCTGCTGCAACCCTTGGTCCAGTCTAATA
122 TCGATCCTGCTGCCGTAACCCTCGATCCGGTCTGATC
* * * * *
35267580 TTAGACTGGGATTGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTACGGGCACTGAACC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGCACT-CAGC
* * * * * * * * **
35267645 GGTTGAAGAGGCACAATACGCAAGTAGAGGACCGACCCA-ATCCCCTTCTGTGTGCTGTCGATCC
65 GGTCGAAGAGGTAGAATGCGCAAGTAGGGGATC-AGCCAGGTCCCCCCCTGTGTGCTGTCGATCC
* * * **
35267709 TGCTGCCATGACCTTCGATCCGG-CTGGGGC
129 TGCTGCCGTAACCCTCGATCCGGTCT-GATC
* * * **
35267739 TTAGACAT-GGAATGAACTTCGTATACCTAAGCCAACCGATGAAATGAGCGTGCGGGCACTCAGC
1 TTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGCACTCAGC
* * *
35267803 TGGTCG-AGAGGTAGAATGCACAAGTTGGGGATCAGCCTGGTCCCCCCCTGTGTGCTGTCGATCC
65 -GGTCGAAGAGGTAGAATGCGCAAGTAGGGGATCAGCCAGGTCCCCCCCTGTGTGCTGTCGATCC
*
35267867 TGCTGCCGTAACCCTCGATACGGTCTGATC
129 TGCTGCCGTAACCCTCGATCCGGTCTGATC
* *
35267897 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCATGCGGGC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGC
35267954 GTTGAGCCGG
Statistics
Matches: 292, Mismatches: 70, Indels: 29
0.75 0.18 0.07
Matches are distributed among these distances:
157 4 0.01
158 116 0.40
159 105 0.36
160 13 0.04
161 5 0.02
162 36 0.12
163 13 0.04
ACGTcount: A:0.25, C:0.27, G:0.26, T:0.21
Consensus pattern (158 bp):
TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGCACTCAGCG
GTCGAAGAGGTAGAATGCGCAAGTAGGGGATCAGCCAGGTCCCCCCCTGTGTGCTGTCGATCCTG
CTGCCGTAACCCTCGATCCGGTCTGATC
Found at i:35268007 original size:158 final size:158
Alignment explanation
Indices: 35267528--35268139 Score: 495
Period size: 159 Copynumber: 3.9 Consensus size: 158
35267518 CAGCCAGGTC
* ** * * * * **
35267528 CCCCCCTGTGTGCTGTCAATCCTGCTGCTGCAACCCTTGGTCCAGTCT-AATATTAGAC-TGGGA
1 CCCCCCTGTGTGCTGTCGATCCTGCTGCCACAACCCTCGATCCGGTCTGGAGCTTAGACAT-GGA
* * * * * * * *
35267591 TTGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTACGGGCACTGAACCGGTTGAAGAGG
65 ATGAACTCCGTATACCTAAGCCAACCCACAAAATGAGCATGCGGGCACTGAGCCGGCTGGAGAGG
* * **
35267656 CACAATACGCAAGTAGAGGACCGACCCAAT
130 CACAATGCGCAAGTAGAGGATC-ACCCTGT
* ** * *
35267686 CCCCTTCTGTGTGCTGTCGATCCTGCTGCCATGACCTTCGATCCGG-CTGGGGCTTAGACATGGA
1 CCCC-CCTGTGTGCTGTCGATCCTGCTGCCACAACCCTCGATCCGGTCTGGAGCTTAGACATGGA
* * ** * * * *
35267750 ATGAACTTCGTATACCTAAGCCAACCGATGAAATGAGCGTGCGGGCACTCAGCTGG-TCGAGAGG
65 ATGAACTCCGTATACCTAAGCCAACCCACAAAATGAGCATGCGGGCACTGAGCCGGCTGGAGAGG
* * * * * *
35267814 TAGAATGCACAAGTTGGGGATCAGCCTGGT
130 CACAATGCGCAAGTAGAGGATCACCCT-GT
** * *
35267844 CCCCCCCTGTGTGCTGTCGATCCTGCTGCCGTAACCCTCGATACGGTCT-GATCTTAGAC-TGGG
1 -CCCCCCTGTGTGCTGTCGATCCTGCTGCCACAACCCTCGATCCGGTCTGGAGCTTAGACAT-GG
* * **
35267907 AATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCATGCGGGCGTTGAGCCGGCTGGAGAG
64 AATGAACTCCGTATACCTAAGCCAACCCACAAAATGAGCATGCGGGCACTGAGCCGGCTGGAGAG
* * * **
35267972 GCATAACGCGTAAGCCGAGGATCAACCCTGT
129 GCACAATGCGCAAGTAGAGGATC-ACCCTGT
* * * *
35268003 CCCCCTCTGCGTGCTGTC-AGTCCTGCTGACACAACCCTC-AGTCCGAT-TGGGGCTTAGACATG
1 CCCCC-CTGTGTGCTGTCGA-TCCTGCTGCCACAACCCTCGA-TCCGGTCTGGAGCTTAGACATG
* * * * * *
35268065 GAATGAACTCCCTATACCTAAGCCAACCCACGAAATGAGCATGCGGGCGCTTAGCCAGCCGGAGA
63 GAATGAACTCCGTATACCTAAGCCAACCCACAAAATGAGCATGCGGGCACTGAGCCGGCTGGAGA
*
35268130 GGCAGAATGC
128 GGCACAATGC
35268140 ATAAGTTAGG
Statistics
Matches: 357, Mismatches: 83, Indels: 27
0.76 0.18 0.06
Matches are distributed among these distances:
157 4 0.01
158 128 0.36
159 219 0.61
160 6 0.02
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (158 bp):
CCCCCCTGTGTGCTGTCGATCCTGCTGCCACAACCCTCGATCCGGTCTGGAGCTTAGACATGGAA
TGAACTCCGTATACCTAAGCCAACCCACAAAATGAGCATGCGGGCACTGAGCCGGCTGGAGAGGC
ACAATGCGCAAGTAGAGGATCACCCTGT
Found at i:35268060 original size:159 final size:158
Alignment explanation
Indices: 35267592--35268139 Score: 512
Period size: 159 Copynumber: 3.5 Consensus size: 158
35267582 AGACTGGGAT
* * * * * * *
35267592 TGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTACGGGCACTGAACCGGTTGAAGAGGC
1 TGAACTCCGTATACCTAAGCCAACCCACAAAATGAGCATGCGGGCACTGAGCCGGCTGGAGAGGC
* * ** * *
35267657 ACAATACGCAAGTAGAGGACCGACCCAATCCCCTTCTGTGTGCTGTCGATCCTGCTGCCATGACC
66 ACAATGCGCAAGTAGAGGATC-ACCCTGTCCCCCTCTGTGTGCTGTCGATCCTGCTGCCATAACC
* *
35267722 TTCGATCCGGCTGGGGCTTAGACATGGAA
130 CTCGATCCGGTTGGGGCTTAGACATGGAA
* * ** * * * * *
35267751 TGAACTTCGTATACCTAAGCCAACCGATGAAATGAGCGTGCGGGCACTCAGCTGG-TCGAGAGGT
1 TGAACTCCGTATACCTAAGCCAACCCACAAAATGAGCATGCGGGCACTGAGCCGGCTGGAGAGGC
* * * * * * *
35267815 AGAATGCACAAGTTGGGGATCAGCCTGGTCCCCCCCTGTGTGCTGTCGATCCTGCTGCCGTAACC
66 ACAATGCGCAAGTAGAGGATCACCCT-GTCCCCCTCTGTGTGCTGTCGATCCTGCTGCCATAACC
* **
35267880 CTCGATACGGTCT-GATCTTAGAC-TGGGAA
130 CTCGATCCGGT-TGGGGCTTAGACAT-GGAA
* * **
35267909 TGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCATGCGGGCGTTGAGCCGGCTGGAGAGGC
1 TGAACTCCGTATACCTAAGCCAACCCACAAAATGAGCATGCGGGCACTGAGCCGGCTGGAGAGGC
* * * ** * * *
35267974 ATAACGCGTAAGCCGAGGATCAACCCTGTCCCCCTCTGCGTGCTGTC-AGTCCTGCTGACACAAC
66 ACAATGCGCAAGTAGAGGATC-ACCCTGTCCCCCTCTGTGTGCTGTCGA-TCCTGCTGCCATAAC
*
35268038 CCTC-AGTCCGATTGGGGCTTAGACATGGAA
129 CCTCGA-TCCGGTTGGGGCTTAGACATGGAA
* * * * * *
35268068 TGAACTCCCTATACCTAAGCCAACCCACGAAATGAGCATGCGGGCGCTTAGCCAGCCGGAGAGGC
1 TGAACTCCGTATACCTAAGCCAACCCACAAAATGAGCATGCGGGCACTGAGCCGGCTGGAGAGGC
*
35268133 AGAATGC
66 ACAATGC
35268140 ATAAGTTAGG
Statistics
Matches: 309, Mismatches: 71, Indels: 18
0.78 0.18 0.05
Matches are distributed among these distances:
157 4 0.01
158 121 0.39
159 179 0.58
160 5 0.02
ACGTcount: A:0.25, C:0.28, G:0.27, T:0.20
Consensus pattern (158 bp):
TGAACTCCGTATACCTAAGCCAACCCACAAAATGAGCATGCGGGCACTGAGCCGGCTGGAGAGGC
ACAATGCGCAAGTAGAGGATCACCCTGTCCCCCTCTGTGTGCTGTCGATCCTGCTGCCATAACCC
TCGATCCGGTTGGGGCTTAGACATGGAA
Found at i:35268153 original size:159 final size:159
Alignment explanation
Indices: 35267732--35268187 Score: 437
Period size: 159 Copynumber: 2.9 Consensus size: 159
35267722 TTCGATCCGG
* * * * *
35267732 CTGGGGCTTAGACATGGAATGAACTTCGTATACCTAAGCCAACCGATGAAATGAGCGTGCGGGCA
1 CTGGGGCTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCCACGAAATGAGCATGCGGGCG
* * * * * * * * *
35267797 CTCAGCTGGTC-GAGAGGTAGAATGCACAAGTTGGGGATCAGCCTGGTCCCCCCCTGTGTGCTGT
66 CTTAGCCGGCCGGAGAGGCAGAATGCATAAGTTAGGGATCACCCT-GTCCCCCTCTGCGTGCTGT
* ** *
35267861 C-GATCCTGCTGCCGTAACCCTCGATACGGT
130 CAG-TCCTGCTGACACAACCCTCGATACGAT
** * * *
35267891 CT-GATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCATGCGGGC
1 CTGGGGCTTAGACAT-GGAATGAACTCCGTATACCTAAGCCAACCCACGAAATGAGCATGCGGGC
* * * * **
35267954 G-TTGAGCCGGCTGGAGAGGCATAACGCGTAAG-CCGAGGATCAACCCTGTCCCCCTCTGCGTGC
65 GCTT-AGCCGGCCGGAGAGGCAGAATGCATAAGTTAG-GGATC-ACCCTGTCCCCCTCTGCGTGC
*
35268017 TGTCAGTCCTGCTGACACAACCCTC-AGTCCGAT
127 TGTCAGTCCTGCTGACACAACCCTCGA-TACGAT
*
35268050 -TGGGGCTTAGACATGGAATGAACTCCCTATACCTAAGCCAACCCACGAAATGAGCATGCGGGCG
1 CTGGGGCTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCCACGAAATGAGCATGCGGGCG
* ** * *
35268114 CTTAGCCAGCCGGAGAGGCAGAATGCATAAGTTAGGGATCGGTCC-GT-CCCCTATGCATGCTGT
66 CTTAGCCGGCCGGAGAGGCAGAATGCATAAGTTAGGGATC-ACCCTGTCCCCCTCTGCGTGCTGT
*
35268177 CAATCCTGCTG
130 CAGTCCTGCTG
35268188 CCCAAACCTC
Statistics
Matches: 238, Mismatches: 48, Indels: 24
0.77 0.15 0.08
Matches are distributed among these distances:
157 26 0.11
158 60 0.25
159 143 0.60
160 9 0.04
ACGTcount: A:0.24, C:0.28, G:0.28, T:0.21
Consensus pattern (159 bp):
CTGGGGCTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCCACGAAATGAGCATGCGGGCG
CTTAGCCGGCCGGAGAGGCAGAATGCATAAGTTAGGGATCACCCTGTCCCCCTCTGCGTGCTGTC
AGTCCTGCTGACACAACCCTCGATACGAT
Found at i:35269432 original size:25 final size:27
Alignment explanation
Indices: 35269397--35269447 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 27
35269387 CCGGTCCGAT
*
35269397 CTTAGGACTGGA-ATGAACTCTGTATG
1 CTTAGGACTGGAGATGAACTCCGTATG
35269423 CTTA-GACTGGAGATGAACTCCGTAT
1 CTTAGGACTGGAGATGAACTCCGTAT
35269448 CCCTAAGTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.29
Consensus pattern (27 bp):
CTTAGGACTGGAGATGAACTCCGTATG
Found at i:35269928 original size:26 final size:26
Alignment explanation
Indices: 35269899--35269951 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
35269889 CTGGTCCGAT
*
35269899 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
35269925 CTTAGACAGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
35269951 C
1 C
35269952 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Found at i:35271557 original size:26 final size:26
Alignment explanation
Indices: 35271506--35271557 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
35271496 GGCTCAAAAT
*
35271506 CTTAGAATGGGAATGAACATCGTATG
1 CTTAGAATGGGAATGAACATCATATG
35271532 CTTAGACAT-GGAATGAAC-TCCATATG
1 CTTAGA-ATGGGAATGAACAT-CATATG
35271558 ACTAAGCCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
25 1 0.04
26 20 0.87
27 2 0.09
ACGTcount: A:0.35, C:0.15, G:0.23, T:0.27
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACATCATATG
Found at i:35271831 original size:170 final size:170
Alignment explanation
Indices: 35271531--35271836 Score: 393
Period size: 170 Copynumber: 1.8 Consensus size: 170
35271521 AACATCGTAT
* * * *
35271531 GCTTAGACATGGAATGAACTCCATATGACTAAGCCAACCCACGAAATGAGCGTGTGGGCGCTCAT
1 GCTTAGACATGGAATGAACTACATATGACTAAGCCAACACACGAAATGAGCGTGTAGGCGCTCAG
* * * * *
35271596 CCGATCGAAAAGGCATAATGCCCAAGCGGGGATCAGCCCGGTCCCCCTCTGCATACTGCCGATCC
66 CCGAGCCAAAAGGCAGAATGCCCAAGCAGGGATCAGCCCGATCCCCCTCTGCATACTGCCGATCC
35271661 TGCTGCCAGTCCTGCTACCATAACCCTTGATCCGACTGGG
131 TGCTGCCAGTCCTGCTACCATAACCCTTGATCCGACTGGG
* * * *
35271701 GCTTAGACATGGAATGAATTACGTATGCCTAAGCCAATACACGAAATGAGCGTGTAGGCGCTCAG
1 GCTTAGACATGGAATGAACTACATATGACTAAGCCAACACACGAAATGAGCGTGTAGGCGCTCAG
** ** * *
35271766 CCG-GCCAAAGAGTTAGAATGCTTAAGCCAGGGATC-GTCCCGATCCCCC-CTGCATGCTGTCGA
66 CCGAGCCAAA-AGGCAGAATGCCCAAG-CAGGGATCAG-CCCGATCCCCCTCTGCATACTGCCGA
35271828 TCCTGCTGC
128 TCCTGCTGC
35271837 TGGTGCTACT
Statistics
Matches: 114, Mismatches: 19, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
169 4 0.04
170 93 0.82
171 17 0.15
ACGTcount: A:0.25, C:0.30, G:0.25, T:0.20
Consensus pattern (170 bp):
GCTTAGACATGGAATGAACTACATATGACTAAGCCAACACACGAAATGAGCGTGTAGGCGCTCAG
CCGAGCCAAAAGGCAGAATGCCCAAGCAGGGATCAGCCCGATCCCCCTCTGCATACTGCCGATCC
TGCTGCCAGTCCTGCTACCATAACCCTTGATCCGACTGGG
Found at i:35272399 original size:158 final size:155
Alignment explanation
Indices: 35271951--35272399 Score: 445
Period size: 159 Copynumber: 2.8 Consensus size: 155
35271941 AATGAAGGTA
* * *
35271951 CGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCACAAGCCAGAGA-CTGGCCCGGTCCCCCCTTCG
1 CGGGCGCTCAGCC-GTCGGAGAGGCAAAATGCGCAAGCCAGGGATC-GGCCCGGTCCCCCCTT-G
* * * *
35272015 TTCTATCGATCCTACTACCACAACCCTCGATCCAGTCTGATCTTAGACTGGGAATGAACTCTGTA
63 TGCTGTCGATCCTACTGCCACAACCCTCGGTCC-GTCTGATCTTAGACTGGGAATGAACTCTGTA
* **
35272080 TGCCTAAGTCAACCCACGAAAAGAGCATG
127 TGCCTAAGCCAACAAACGAAAAGAGCATG
* * * * * * * * *
35272109 TGGGCACTGAGCCGACCGGAGAGGCATAATGTGCAAGTCAGGGATCGGCCCGATCCCCCTCTACG
1 CGGGCGCTCAGCCG-TCGGAGAGGCAAAATGCGCAAGCCAGGGATCGGCCCGGTCCCCC-CT-TG
* * * * * ** **
35272174 TGCTGCCGGTCCCACTGCCACAACCCTCAGTCCGACTGGGGCTTAGACAT-GGAATGAACTCCCT
63 TGCTGTCGATCCTACTGCCACAACCCTCGGTCCGTCT-GATCTTAGAC-TGGGAATGAACTCTGT
*
35272238 ATGCCTAAGCCAACAAAC-AAAACGGGCATG
126 ATGCCTAAGCCAACAAACGAAAA-GAGCATG
* * ** *
35272268 CGGGCGCTCAGCCAGTCGGAGAGGCAAAATGCGTAAGCCGGGGATCGATCTGGTCCCCCCTGTGT
1 CGGGCGCTCAGCC-GTCGGAGAGGCAAAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCCT-TGT
*
35272333 GCTGTCGATCCTGCTGCCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTAT
64 GCTGTCGATCCTACTGCCACAACCCTCGGTCC-GTCTGATCTTAGACTGGGAATGAACTCTGTAT
35272398 GC
128 GC
35272400 TTAGACTGGG
Statistics
Matches: 228, Mismatches: 53, Indels: 20
0.76 0.18 0.07
Matches are distributed among these distances:
157 2 0.01
158 107 0.47
159 117 0.51
160 2 0.01
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (155 bp):
CGGGCGCTCAGCCGTCGGAGAGGCAAAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCCTTGTGC
TGTCGATCCTACTGCCACAACCCTCGGTCCGTCTGATCTTAGACTGGGAATGAACTCTGTATGCC
TAAGCCAACAAACGAAAAGAGCATG
Found at i:35272402 original size:26 final size:26
Alignment explanation
Indices: 35272373--35272425 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
35272363 CCGGTCTGAT
*
35272373 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
35272399 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35272425 C
1 C
35272426 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35272904 original size:26 final size:26
Alignment explanation
Indices: 35272866--35272944 Score: 142
Period size: 26 Copynumber: 3.0 Consensus size: 26
35272856 GGCTCAAAAT
35272866 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
35272892 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
35272918 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
35272944 C
1 C
35272945 CTAAGCCAAC
Statistics
Matches: 52, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
26 51 0.98
27 1 0.02
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:35273184 original size:26 final size:26
Alignment explanation
Indices: 35273155--35273237 Score: 132
Period size: 26 Copynumber: 3.2 Consensus size: 26
35273145 CGAAGAGGCA
*
35273155 TATGCTTAGACATGGAATGAAGTCCG
1 TATGCTTAGACATGGAATGAACTCCG
35273181 TATGCTTAGAC-TGGGAATGAACTCCG
1 TATGCTTAGACAT-GGAATGAACTCCG
*
35273207 TATGCTTAGACATGGAATGAACTCCA
1 TATGCTTAGACATGGAATGAACTCCG
35273233 TATGC
1 TATGC
35273238 CTAAGCCAAC
Statistics
Matches: 53, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
25 1 0.02
26 51 0.96
27 1 0.02
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (26 bp):
TATGCTTAGACATGGAATGAACTCCG
Found at i:35273710 original size:26 final size:26
Alignment explanation
Indices: 35273681--35273733 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
35273671 CTGATCCGAT
35273681 CTTAGACTT-GGAATGAACTCTGTATG
1 CTTAGA-TTGGGAATGAACTCTGTATG
35273707 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGATTGGGAATGAACTCTGTATG
35273733 C
1 C
35273734 CTAAGTCAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 2 0.08
26 24 0.92
ACGTcount: A:0.26, C:0.15, G:0.25, T:0.34
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTCTGTATG
Found at i:35274133 original size:184 final size:184
Alignment explanation
Indices: 35273818--35274187 Score: 485
Period size: 184 Copynumber: 2.0 Consensus size: 184
35273808 TTCGACTGGG
* * * * * * *
35273818 GCTTAGATATTGAATGAACTCCGTATGCCTAAGCCAACCTATGAAATGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGAGCTCAC
* *
35273883 TCGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATTGACCCGATCCCCCTTGCGTGCTGTCGATCC
66 TCGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCTTACGTGCTGTCGATCC
* *
35273948 TGCTGCCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATAT
131 TGCTACCACAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCATAT
*
35274002 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGAGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGAGCTC-A
* * * * * *
35274067 CT-GG-CTGGAGAGGTAGAATGTGTAAGCCAGGGATCGACCTGAT-TCCCTCTACGTGCTGTTGA
65 CTCGGTC-GGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCT-TACGTGCTGTCGA
** * * *
35274129 TCCTGCTACTGCAACCCTCGGTTCGATCTGATCTTAGACTGGGAATGAACTCCGTAT
128 TCCTGCTACCACAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCATAT
35274186 GC
1 GC
35274188 CTATGTCAAC
Statistics
Matches: 160, Mismatches: 23, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
183 5 0.03
184 153 0.96
185 2 0.01
ACGTcount: A:0.24, C:0.26, G:0.27, T:0.23
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGAGCTCAC
TCGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCTTACGTGCTGTCGATCC
TGCTACCACAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCATAT
Found at i:35274493 original size:26 final size:26
Alignment explanation
Indices: 35274464--35274516 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
35274454 CTGGTCCGAT
35274464 CTTAAACTGGGAATCAACTCCGTATG
1 CTTAAACTGGGAATCAACTCCGTATG
* *
35274490 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATCAACTCCGTATG
35274516 C
1 C
35274517 CTAAGTCAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAAACTGGGAATCAACTCCGTATG
Found at i:35274712 original size:783 final size:790
Alignment explanation
Indices: 35273536--35274982 Score: 2078
Period size: 783 Copynumber: 1.8 Consensus size: 790
35273526 GCTCAGACAT
* *
35273536 GGAATGAACTCCCTATGAAGCCAACCCACAAAACGGGCGTGCGGGTGCTCAGTCGGCCAGAGAGG
1 GGAATGAAATCCCTATGAAGCCAACCCACAAAACGGGCGTGCGGGCGCTCAGTCGGCCAGAGAGG
* * *
35273601 TAGAATGCGCAAGCCGGGGATCGGCTCGGTCCCCCCGCGTGCTGTCGATCCTATTGTCACAACCC
66 TAGAATGCGCAAGCCGAGGATCGGCCCGATCCCCCCGCGTGCTGTCGATCCTATTGTCACAACCC
* * * * * *
35273666 TCGGTCTGATCCGATCTTAGACTTGGAATGAACTCTGTATGCTTAGATTGGGAATGAACTCTGTA
131 TCGGTCTGATCCGATCTTAAACTGGGAATCAACTCCGTATGCTTAGACTGGGAATGAACTCCGTA
* ** * *
35273731 TGCCTAAGTCAATGCATGAAACGAGCGCACCTGTGTGCTGCCGATCCCGATGCTGGTCCTACTGC
196 TGCCTAAGTCAATGCATGAAACGAGCACACCTACGTGCTGCCGATCCCGATGCCGATCCTACTGC
* * *
35273796 CACAACCCTCTGTTCGACTGGGGCTTAGATATTGAATGAACTCCGTATGCCTAAGCCAACCTATG
261 CACAACCCTCTGGTCGACTGGGGCTTAGATATGGAATGAACTCCGTATGCCTAAGCCAACCCATG
* **
35273861 AAATGAGCGTGCGGGTGCTCAGTCGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATTGACCCGAT
326 AAACGAGCGTGCGGGTGCTCAACCGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATTGACCCGAT
*
35273926 -CCCCCT-TGC-GTG-C-TG-T-C-GATCCTGCTGCCACAACCCTCGGTCCGGTCCGATCTTAGA
391 CCCCCCTATGCAGTGACTTGCTGCTGATCCTGCTGCCACAACCCTCGGTCCGATCCGATCTTAGA
* **
35273983 CTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAA
456 CTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAA
* * *
35274048 CGAGCATGCGGGAGCTCAACTGGCT-GGAGAGGTAGAATGTGTAAGCC-AGGGATCGAC-CTGAT
521 CGAGCATGCGGGAGCTCAAC-CGATAGGAGAGGTAGAATGCGTAAGCCGA-GGATCGACTC-GAT
* * * * * * * *
35274110 TCCCTCTACGTGCTGTTGATCCTGCTACTGCAACCCTCGGTTCGATCTGATCTTAGACTGGGAAT
583 TCCCTCTACGTGCTATCGATCCTACTACCGCAACCCTCGATCCGATCTAATCTTAGACTAGGAAT
35274175 GAACTCCGTATGCCTATGTCAACCCACGAAACGAACGTATGGTGCTCAGTCGATCGGAGAGGCAG
648 GAACTCCGTATGCCTATGTCAACCCACGAAACGAACGTATGGTGCTCAGTCGATCGGAGAGGCAG
35274240 AATGCGCTAGCTGGGGATCGGATTGATTCACTGTCGATCCTACTGTTGCAACCCTCAGTTTGATC
713 AATGCGCTAGCTGGGGATCGGATTGATTCACTGTCGATCCTACTGTTGCAACCCTCAGTTTGATC
35274305 TAATCTTAGACTG
778 TAATCTTAGACTG
** *
35274318 GGAATGAAATCCCTATGAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAGTCGGCCGGAGAGG
1 GGAATGAAATCCCTATGAAGCCAACCCACAAAACGGGCGTGCGGGCGCTCAGTCGGCCAGAGAGG
* * * * **
35274383 TAGAATGCGCAAGTCGAGGATCGGCCCGATCGCCCCTGCGTGCTGTCGATCCTGTTGTCGCAATG
66 TAGAATGCGCAAGCCGAGGATCGGCCCGATC-CCCCCGCGTGCTGTCGATCCTATTGTCACAACC
* *
35274448 CTTGGTCTGGTCCGATCTTAAACTGGGAATCAACTCCGTATGCTTAGACTGGGAATGAACTCCGT
130 CTCGGTCTGATCCGATCTTAAACTGGGAATCAACTCCGTATGCTTAGACTGGGAATGAACTCCGT
** * *
35274513 ATGCCTAAGTCAATGCATGAAACGAGCATGCCTACGTGCTGTCGATCCCGATGCCGATCCTGCTG
195 ATGCCTAAGTCAATGCATGAAACGAGCACACCTACGTGCTGCCGATCCCGATGCCGATCCTACTG
*
35274578 CCACAACCCT-TGGTCTGACTGGGGCTTAGATATGGAATGAACTCCGTATGCCTAAGCCAACCCG
260 CCACAACCCTCTGGTC-GACTGGGGCTTAGATATGGAATGAACTCCGTATGCCTAAGCCAACCCA
* **
35274642 TGAAACGAGCGTGCGGGTGCTCAACCGG-CTGGAGAGGCAGAATGTGCAAG-GTGAGGATT-AGC
324 TGAAACGAGCGTGCGGGTGCTCAACCGGTC-GGAGAGGCAGAATGCGCAAGCCAG-GGATTGA-C
* * * * * *
35274704 CTGATCCCCCCTACGTGCTATTGATCTTGCTGCTGGTTCTGCTGCCACAACCTTCGGTCCGATCT
386 CCGATCCCCCCTA--TGC-AGTGA-CTTGCTGCTGATCCTGCTGCCACAACCCTCGGTCCGATCC
35274769 GATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
447 GATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
* * *
35274834 CCCACAAAACGAGCGTGCGGGTGTTCAACCGATAGGAGAGGTAGAATGCGTAAGCCGAGGATCGA
512 CCCACAAAACGAGCATGCGGGAGCTCAACCGATAGGAGAGGTAGAATGCGTAAGCCGAGGATCGA
* *
35274899 CTCGATTCCTTCTACGTGGTATCGATCCTACTACCGCAACCCTCGATCCGATCTAATCTTAGACT
577 CTCGATTCCCTCTACGTGCTATCGATCCTACTACCGCAACCCTCGATCCGATCTAATCTTAGACT
35274964 AGGAATGAACTCCGTATGC
642 AGGAATGAACTCCGTATGC
35274983 TTAGACTGGG
Statistics
Matches: 578, Mismatches: 67, Indels: 27
0.86 0.10 0.04
Matches are distributed among these distances:
782 94 0.16
783 250 0.43
784 6 0.01
787 3 0.01
789 2 0.00
791 1 0.00
792 2 0.00
793 1 0.00
794 3 0.01
795 214 0.37
796 2 0.00
ACGTcount: A:0.24, C:0.27, G:0.27, T:0.23
Consensus pattern (790 bp):
GGAATGAAATCCCTATGAAGCCAACCCACAAAACGGGCGTGCGGGCGCTCAGTCGGCCAGAGAGG
TAGAATGCGCAAGCCGAGGATCGGCCCGATCCCCCCGCGTGCTGTCGATCCTATTGTCACAACCC
TCGGTCTGATCCGATCTTAAACTGGGAATCAACTCCGTATGCTTAGACTGGGAATGAACTCCGTA
TGCCTAAGTCAATGCATGAAACGAGCACACCTACGTGCTGCCGATCCCGATGCCGATCCTACTGC
CACAACCCTCTGGTCGACTGGGGCTTAGATATGGAATGAACTCCGTATGCCTAAGCCAACCCATG
AAACGAGCGTGCGGGTGCTCAACCGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATTGACCCGAT
CCCCCCTATGCAGTGACTTGCTGCTGATCCTGCTGCCACAACCCTCGGTCCGATCCGATCTTAGA
CTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAA
CGAGCATGCGGGAGCTCAACCGATAGGAGAGGTAGAATGCGTAAGCCGAGGATCGACTCGATTCC
CTCTACGTGCTATCGATCCTACTACCGCAACCCTCGATCCGATCTAATCTTAGACTAGGAATGAA
CTCCGTATGCCTATGTCAACCCACGAAACGAACGTATGGTGCTCAGTCGATCGGAGAGGCAGAAT
GCGCTAGCTGGGGATCGGATTGATTCACTGTCGATCCTACTGTTGCAACCCTCAGTTTGATCTAA
TCTTAGACTG
Found at i:35274810 original size:26 final size:26
Alignment explanation
Indices: 35274772--35274824 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35274762 CCGATCTGAT
35274772 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
35274798 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
35274824 C
1 C
35274825 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:35274985 original size:26 final size:26
Alignment explanation
Indices: 35274956--35275008 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
35274946 CCGATCTAAT
35274956 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* * *
35274982 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
35275008 C
1 C
35275009 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:35275082 original size:184 final size:184
Alignment explanation
Indices: 35274751--35275082 Score: 461
Period size: 184 Copynumber: 1.8 Consensus size: 184
35274741 TCTGCTGCCA
* * * *
35274751 CAACCTTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAAC
1 CAACCCTCGATCCGATCTAATCTTAGACTAGGAATGAACTCCATATGCTTAGACATGGAATGAAC
* * * * *
35274816 TCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGTGTTCAACCGATAGGAGAGGTAGAAT
66 TCCGTATGCCTAAGCCAACCCACAAAACGAGCATGCGGATGCTCAACCGACAGGAGAGGCAGAAT
*
35274881 GCGTAAGCCGAGGATCGACTCGATTCCTTCTACGTGGTATCGATCCTACTACCG
131 GCGCAAGCCGAGGATCGACTCGATTCCTTCTACGTGGTATCGATCCTACTACCG
* *
35274935 CAACCCTCGATCCGATCTAATCTTAGACTAGGAATGAACTCCGTATGCTTAGAC-TGGGGATGAA
1 CAACCCTCGATCCGATCTAATCTTAGACTAGGAATGAACTCCATATGCTTAGACAT-GGAATGAA
* * * * * *
35274999 CTCTGTATGCCTAAGTCAACCCACGAAATGAGCATGCGGATGCTCAGCCGACCA-GAGAGGCAGG
65 CTCCGTATGCCTAAGCCAACCCACAAAACGAGCATGCGGATGCTCAACCGA-CAGGAGAGGCAGA
*
35275063 ATGCGCAAGCCGGGGATCGA
129 ATGCGCAAGCCGAGGATCGA
35275083 ACGGGTGGTG
Statistics
Matches: 127, Mismatches: 19, Indels: 4
0.85 0.13 0.03
Matches are distributed among these distances:
183 1 0.01
184 125 0.98
185 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.26, T:0.21
Consensus pattern (184 bp):
CAACCCTCGATCCGATCTAATCTTAGACTAGGAATGAACTCCATATGCTTAGACATGGAATGAAC
TCCGTATGCCTAAGCCAACCCACAAAACGAGCATGCGGATGCTCAACCGACAGGAGAGGCAGAAT
GCGCAAGCCGAGGATCGACTCGATTCCTTCTACGTGGTATCGATCCTACTACCG
Found at i:35276595 original size:184 final size:182
Alignment explanation
Indices: 35276310--35276765 Score: 655
Period size: 184 Copynumber: 2.5 Consensus size: 182
35276300 GAACTCCCTA
* * * * ** *
35276310 TGCCTAAGCCAACCCACGAAACGGGCGTGTGGGCGCTCAGTCGGTCTGAGACACAGAATGCGCAA
1 TGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTCA-CCGGTCAGAGAGGCAGAATGCACAA
* *
35276375 GCCGAGGATGGGCTCGATCCCCTCTATGTGCTACCGATCCTACTGTTGCAACCCTCGATCCGATC
65 GCCGAGGATCGGCTCGGTCCCC-CTATGTGCTACCGATCCTACTGTTGCAACCCTCGATCCGATC
35276440 TGATCTAAAACTGGGAATGAACTTCACATGCTTAGACTGGGGATGAACTTCGTG
129 TGATCTAAAACTGGGAATGAACTTCACATGCTTAGACTGGGGATGAACTTCGTG
* *
35276494 TGCCTAAGTCAAGCCACGAAACGAGTGTGTGGGCGCTCGACCGGTCAGAGAGGCAGAATGCACAA
1 TGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTC-ACCGGTCAGAGAGGCAGAATGCACAA
* *
35276559 GCCGAGGATCGACCCGGTCCCCC-ATGCATGCTACCGATCCTACTGTTGCAACCCTCGATCCGAT
65 GCCGAGGATCGGCTCGGTCCCCCTATG--TGCTACCGATCCTACTGTTGCAACCCTCGATCCGAT
35276623 CTGATCTAAAACTGGGAATGAACTTCACATGCTTAGACTGGGGATGAACTTCGTG
128 CTGATCTAAAACTGGGAATGAACTTCACATGCTTAGACTGGGGATGAACTTCGTG
* * * * * *
35276678 TGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTCAACC-GACTGGAGAGGTAGAATGCACA
1 TGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTC-ACCGGTC-AGAGAGGCAGAATGCACA
*
35276742 AGCTGAGGATCGGCTCGGTCCCCC
64 AGCCGAGGATCGGCTCGGTCCCCC
35276766 CCTGCGGGCT
Statistics
Matches: 243, Mismatches: 25, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
182 3 0.01
183 3 0.01
184 236 0.97
185 1 0.00
ACGTcount: A:0.25, C:0.28, G:0.27, T:0.20
Consensus pattern (182 bp):
TGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTCACCGGTCAGAGAGGCAGAATGCACAAG
CCGAGGATCGGCTCGGTCCCCCTATGTGCTACCGATCCTACTGTTGCAACCCTCGATCCGATCTG
ATCTAAAACTGGGAATGAACTTCACATGCTTAGACTGGGGATGAACTTCGTG
Found at i:35279384 original size:26 final size:26
Alignment explanation
Indices: 35279355--35279407 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
35279345 CCGATCCGAT
* *
35279355 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACACCATATG
35279381 CTTAGACATGGAATGAACACCATATG
1 CTTAGACATGGAATGAACACCATATG
35279407 C
1 C
35279408 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.21, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACATGGAATGAACACCATATG
Found at i:35279637 original size:158 final size:157
Alignment explanation
Indices: 35279380--35279723 Score: 379
Period size: 158 Copynumber: 2.2 Consensus size: 157
35279370 AACTCCGTAT
* **
35279380 GCTTAGACATGGAATGAACACCATATGCCTAAGCCAACCATCGAAACAAGCGTTCGGGCACTCAG
1 GCTTAGAC-TGGAATGAACTCCATATGCCTAAGCCAACCATCGAAACAAGCGAGCGGGCACTCAG
* * * * *
35279445 CTGGCCAGAGAGGTAGAATGTGCAAGCCGAGGATC-AGCTCGATCACCCCTGCGTGCTATCGATC
65 CCGACCAGAGAGGCAGAATGCGCAAGCCGAGGATCGAGC-CGATCACCCCTGCATGCTATCGATC
* *
35279509 CTATTGCCACAACCCTCAGTCCGG-CTGGG
129 CTACTGCCACAACCCTCAGTCCGGTCT-GA
* * *
35279538 GCTTAGACGTGGAATGAACTCCCTATGCCTAAGCCAACCCA-CGAAACAGGCGAGCGGGCGCTCA
1 GCTTAGAC-TGGAATGAACTCCATATGCCTAAGCCAA-CCATCGAAACAAGCGAGCGGGCACTCA
** * * * * *
35279602 GCCGACTGGAGAGGCAGAATGCGCAAGGCGGGGATCGAGCCGGTCCCCCCTGCATGCTGTCGATC
64 GCCGACCAGAGAGGCAGAATGCGCAAGCCGAGGATCGAGCCGATCACCCCTGCATGCTATCGATC
*** *
35279667 CTACTGGTGCAACCCTCAGTCTGGTCTGA
129 CTACTGCCACAACCCTCAGTCCGGTCTGA
* *
35279696 TCTTAGACTGGGAATGAACTCCGTATGC
1 GCTTAGACT-GGAATGAACTCCATATGC
35279724 TTAGACTGGG
Statistics
Matches: 155, Mismatches: 27, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
157 1 0.01
158 146 0.94
159 8 0.05
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.18
Consensus pattern (157 bp):
GCTTAGACTGGAATGAACTCCATATGCCTAAGCCAACCATCGAAACAAGCGAGCGGGCACTCAGC
CGACCAGAGAGGCAGAATGCGCAAGCCGAGGATCGAGCCGATCACCCCTGCATGCTATCGATCCT
ACTGCCACAACCCTCAGTCCGGTCTGA
Found at i:35279743 original size:25 final size:26
Alignment explanation
Indices: 35279697--35279748 Score: 97
Period size: 25 Copynumber: 2.0 Consensus size: 26
35279687 CTGGTCTGAT
35279697 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35279723 CTTAGACTGGG-ATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35279748 C
1 C
35279749 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 15 0.58
26 11 0.42
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35280843 original size:26 final size:26
Alignment explanation
Indices: 35280792--35280843 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
35280782 CTGGTCTGAT
*
35280792 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
35280818 CTTAGACTGGTG-ATGAACTCCGTATG
1 CTTAGACTGG-GAATGAACTCCATATG
35280844 TCTAAGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:35280995 original size:185 final size:183
Alignment explanation
Indices: 35280423--35281003 Score: 648
Period size: 184 Copynumber: 3.2 Consensus size: 183
35280413 ATGGCTCAAA
* * * * * *
35280423 ATCTTAGACTGGGAATGAACTCCGCACGCTT-GACATGGAATGAACTCTGTATGCCTAAGCCAAC
1 ATCTTAGACTGGGAATGAACTTCGTATGCTTAGAC-TGGGATGAACTCCGTATGCCTAAGTCAAC
* * * *
35280487 CCACGAAACGAGTGTGCGGGAGCTCAGCAGGCTGGAGAGGCAGAATGCGCAAGCCAGGGATCGAC
65 CCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGAC
* * * * * * ** *
35280552 CCAGTCCCCCTTGCGTGCTCTTGATCCTGCTGCTGCAACCCTTGGTCC-AGTCCG
130 CCGGTCCCCCTTACGTGCTATCGATCCTACTGCCGCAACCCTCAGTCCGA-TCTG
* * * **
35280606 GTCTTACACTAGGAACAAAC-TCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAA
1 ATCTTAGACTGGGAATGAACTTC-GTATGCTTAGACT-GGGATGAACTCCGTATGCCTAAGTCAA
* * ** * * * * * *
35280670 CCTACGAAACGAACGTGCGGGCATTGAGCCAGCCGGAGAAGCAGAATGCGCAAGCCGGGGATTGG
64 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGA
* * * * *
35280735 GCCGATCCTCCC-TACGTGCTATCGATCCTACTGCCGCAACCCTCCGTCTGGTCTG
129 CCCGGTCC-CCCTTACGTGCTATCGATCCTACTGCCGCAACCCTCAGTCCGATCTG
* *
35280790 ATCTTAGACTGGGAATGAACTTCATATGCTTAGACTGGTGATGAACTCCGTATGTCTAAGTCAAC
1 ATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGG-GATGAACTCCGTATGCCTAAGTCAAC
* * * * *
35280855 CCACGAAACGAGCGTTCAGGCGCTCAACCGGCCGGAGAGGCAAAATGCACAAGCCAGGGATCGAC
65 CCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGAC
35280920 CCGGTCCCCCTTTACGTGCTATCGATCCTACTGCCGCAACCCTCAGTCCGATCTG
130 CCGGTCCCCC-TTACGTGCTATCGATCCTACTGCCGCAACCCTCAGTCCGATCTG
*
35280975 ATCTTAGACTGGGAATGAACTCCGTATGC
1 ATCTTAGACTGGGAATGAACTTCGTATGC
35281004 ATAAGTCAAC
Statistics
Matches: 322, Mismatches: 67, Indels: 16
0.80 0.17 0.04
Matches are distributed among these distances:
182 1 0.00
183 27 0.08
184 222 0.69
185 72 0.22
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (183 bp):
ATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGATGAACTCCGTATGCCTAAGTCAACC
CACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACC
CGGTCCCCCTTACGTGCTATCGATCCTACTGCCGCAACCCTCAGTCCGATCTG
Found at i:35281127 original size:158 final size:158
Alignment explanation
Indices: 35280817--35281181 Score: 375
Period size: 158 Copynumber: 2.3 Consensus size: 158
35280807 AACTTCATAT
*
35280817 GCTTAGACTGGTG-ATGAACTCCGTATGTCTAAGTCAACCCACGAAACGAGCGTTCAGGCGCTCA
1 GCTTAGACTGG-GAATGAACTCCGTATG-CTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCA
* * * *
35280881 ACCGGCCGGAGAGGCAAAATGCACAAGCCAGGGATCGACCCGGTCCCCCTTTACGTGCTATCGAT
64 ACCAGCCGAAGAGGCAAAATGCACAAGCCAGGGATCGACCCGATCCCCCTCTACGTGCTATCGAT
* **
35280946 CCTACTGCCGCAACCCTCAGTCCGATCT-GA
129 CCTACTACCAAAACCCTCAGTCCGAT-TGGA
* * * *
35280976 TCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGCGTGC-GGCGCTGAG
1 GCTTAGACTGGGAATGAACTCCGTATGC-TAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAA
* * * * * * *
35281040 CCAGCCGAAGAGGCATAATGCGCAAG-CTGTGGGTC-AGCCCGATCCCCCTCTGCGTGCTGTCGG
65 CCAGCCGAAGAGGCAAAATGCACAAGCCAG-GGATCGA-CCCGATCCCCCTCTACGTGCTATCGA
* * *
35281103 TACC-ACTACCAAAACCCTCGGTCCGGTTGGG
128 T-CCTACTACCAAAACCCTCAGTCCGATTGGA
* * *
35281134 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGTCGACCCACTAAACG
1 GCTTAGAC-TGGGAATGAACTCCGTATG-CTAAGTCAACCCACGAAACG
35281182 GGTGTACGGG
Statistics
Matches: 171, Mismatches: 27, Indels: 17
0.80 0.13 0.08
Matches are distributed among these distances:
157 4 0.02
158 115 0.67
159 52 0.30
ACGTcount: A:0.25, C:0.31, G:0.25, T:0.19
Consensus pattern (158 bp):
GCTTAGACTGGGAATGAACTCCGTATGCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAAC
CAGCCGAAGAGGCAAAATGCACAAGCCAGGGATCGACCCGATCCCCCTCTACGTGCTATCGATCC
TACTACCAAAACCCTCAGTCCGATTGGA
Found at i:35281321 original size:25 final size:26
Alignment explanation
Indices: 35281293--35281341 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
35281283 CTGGTTCGAT
35281293 CTTACACT-GGAATGAACTCTGTACG
1 CTTACACTGGGAATGAACTCTGTACG
* *
35281318 CTTAGACTGGGGATGAACTCTGTA
1 CTTACACTGGGAATGAACTCTGTA
35281342 TGCCTAAGTC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 7 0.33
26 14 0.67
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCTGTACG
Found at i:35281617 original size:12 final size:12
Alignment explanation
Indices: 35281600--35281639 Score: 53
Period size: 12 Copynumber: 3.3 Consensus size: 12
35281590 CCTGGTCCCC
35281600 CCTGCTGCTGGT
1 CCTGCTGCTGGT
*
35281612 CCTGCTGCTGAT
1 CCTGCTGCTGGT
* *
35281624 CCTACTGTTGGT
1 CCTGCTGCTGGT
35281636 CCTG
1 CCTG
35281640 TAGCTATAAC
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.05, C:0.33, G:0.28, T:0.35
Consensus pattern (12 bp):
CCTGCTGCTGGT
Found at i:35282093 original size:159 final size:156
Alignment explanation
Indices: 35281692--35282098 Score: 408
Period size: 159 Copynumber: 2.6 Consensus size: 156
35281682 AACTTCGTAT
* * * *
35281692 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTTCGGGTGCTCAG
1 GCTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCG-ACGGGCGCTTAG
**
35281757 TCGGCC-AGAGAGGCAGAATGTGCAA-CCAGGGATCGACTCGATCCCCTCTGCGTGCTGTCGATC
64 TCGGCCGA-AGAGGCAGAATGCACAAGCCAGGGATCGACTCGATCCCCTCTGCGTGCTGTCGATC
* *
35281820 CTACAACCGCAACCCTCAGTCCGATCCGA
128 CCACAACCACAACCCTCAGTCCGATCCGA
* * ** * *
35281849 TCTTAGACTGGGAATGAACTCTGTATGTATAAGTCAACCCATGAAATGAGTGTACGGGCG-TTGA
1 GCTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCG-ACGGGCGCTT-A
* ** * ** *
35281913 GCCGATCGAAGAGGCATAATGCACAAGCTGGGGATCGACTCGATCCCCCTCTGTGTGCTGTCGAT
63 GTCGGCCGAAGAGGCAGAATGCACAAGCCAGGGATCGACTCGAT-CCCCTCTGCGTGCTGTCGAT
* * * * * * *
35281978 CCCGCTACCACAACCCTCGGTTCG-GCTGGG
127 CCCACAACCACAACCCTCAGTCCGATC-CGA
* * * *
35282008 GCTTAGACGTGGAATGAACTCCCTATGCCTAAGCCAACCCATTAAACGGGCGAGCGGGCGCTTAG
1 GCTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGA-CGGGCGCTTAG
35282073 TCGGCCGAAGAGGCAGAATGCACAAG
64 TCGGCCGAAGAGGCAGAATGCACAAG
35282099 TCGAGGATCG
Statistics
Matches: 199, Mismatches: 42, Indels: 16
0.77 0.16 0.06
Matches are distributed among these distances:
156 2 0.01
157 68 0.34
158 18 0.09
159 108 0.54
160 3 0.02
ACGTcount: A:0.25, C:0.28, G:0.27, T:0.20
Consensus pattern (156 bp):
GCTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGACGGGCGCTTAGTC
GGCCGAAGAGGCAGAATGCACAAGCCAGGGATCGACTCGATCCCCTCTGCGTGCTGTCGATCCCA
CAACCACAACCCTCAGTCCGATCCGA
Found at i:35282277 original size:158 final size:155
Alignment explanation
Indices: 35282081--35282521 Score: 361
Period size: 170 Copynumber: 2.7 Consensus size: 155
35282071 AGTCGGCCGA
* * *** * *
35282081 AGAGGCAGAATGCACAAGTCGAGGATCGGCCCAATCCCCCCAGCATGTTACCGATCCTATTGCTG
1 AGAGGCAGAATGCGCAAGTCGGGGATCGGCCTGGTCCCCCC-GCGTGCTACCGATCCTATTGCTG
**
35282146 CAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCCAAGTTAACC-CACGA
65 CAACCCTCGGTCC-GTCTGATCTTAGACT-GGAATGAACTCCGTATGCCCAAGCCAACCAC-CGA
* *
35282210 AACAAGCA-TACAGGTGCTCAGCCGA-TCGG
127 AACAAG-AGTACAGGCGCTCAGCCAACT-GG
* * *
35282239 AGAGGCATAATGCGCAAG-CTGGGGATCAGGTC-GGTCCCCTCGACGTGCTACCGATCCCGCTAC
1 AGAGGCAGAATGCGCAAGTC-GGGGATC-GGCCTGGTCCCCCCG-CGTGCTACCGAT--C-CTA-
* ** * *
35282302 CGGTCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCTGTATGCCTA
59 ---T--TGCTG---CAACCCTCGGTCCGTCT-GATCTTAGAC-TGGAATGAACTCCGTATGCCCA
** * *
35282367 AGCCAACCACCGAAATGAGAGTGCGGGCGCTCAGCCAACTGG
114 AGCCAACCACCGAAACAAGAGTACAGGCGCTCAGCCAACTGG
* **
35282409 AGAGGCAGAATGCGCAAGTCGGGGATCGGCCTGGTCCCCCCTGCGTGCTACTGATCCTGCTGCTG
1 AGAGGCAGAATGCGCAAGTCGGGGATCGGCCTGGTCCCCCC-GCGTGCTACCGATCCTATTGCTG
* *
35282474 CAACCCTCGATCCGGTCGGATCTTAGACTCGGAATGAACTCCGTATGC
65 CAACCCTCGGTCC-GTCTGATCTTAGACT-GGAATGAACTCCGTATGC
35282522 TTAGACATGG
Statistics
Matches: 224, Mismatches: 34, Indels: 50
0.73 0.11 0.16
Matches are distributed among these distances:
157 3 0.01
158 75 0.33
159 5 0.02
160 1 0.00
161 8 0.04
165 1 0.00
167 7 0.03
168 1 0.00
169 7 0.03
170 111 0.50
171 5 0.02
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (155 bp):
AGAGGCAGAATGCGCAAGTCGGGGATCGGCCTGGTCCCCCCGCGTGCTACCGATCCTATTGCTGC
AACCCTCGGTCCGTCTGATCTTAGACTGGAATGAACTCCGTATGCCCAAGCCAACCACCGAAACA
AGAGTACAGGCGCTCAGCCAACTGG
Found at i:35282524 original size:26 final size:26
Alignment explanation
Indices: 35282495--35282547 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
35282485 CCGGTCGGAT
35282495 CTTAGAC-TCGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
35282521 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
35282547 C
1 C
35282548 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:35282665 original size:184 final size:184
Alignment explanation
Indices: 35282336--35282705 Score: 507
Period size: 184 Copynumber: 2.0 Consensus size: 184
35282326 TCCGACTGGG
* * *
35282336 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCACCGAAATGAGAGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCACCGAAACGAGAGTACGGGCGCTCAG
* * *
35282401 CCAACTGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCTGGTCCCCCCTGCGTGCTACTGATCC
66 CCAACTAGAGAGGCAGAATGCACAAGTCGGGGATCGGCCTGGTCCCCCCTACGTGCTACTGATCC
* *
35282466 TGCTGCTGCAACCCT-CGATCCGG-TCGGATCTTAGACTCGGAATGAACTCCGTAT
131 TACTACTGCAACCCTCCG-TCCGGTTC-GATCTTAGACTCGGAATGAACTCCGTAT
* *
35282520 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC-CACGAAACGAGCGTACGGGTGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCAC-CGAAACGAGAGTACGGGCGCTCA
** * *
35282584 GCC-GGTCAGAGAGGCAGAATGCATAAGTCGGGGATCGGCCTGGTCCCCCCTACGTGCT-GTCGA
65 GCCAACT-AGAGAGGCAGAATGCACAAGTCGGGGATCGGCCTGGTCCCCCCTACGTGCTACT-GA
* * *
35282647 TCCTACTATTGGAACCCTCCGTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTAT
128 TCCTACTACTGCAACCCTCCGTCCGGTTCGATCTTAGACTCGGAATGAACTCCGTAT
35282704 GC
1 GC
35282706 ATAAGTCAAC
Statistics
Matches: 164, Mismatches: 17, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
183 3 0.02
184 157 0.96
185 4 0.02
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.21
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCACCGAAACGAGAGTACGGGCGCTCAG
CCAACTAGAGAGGCAGAATGCACAAGTCGGGGATCGGCCTGGTCCCCCCTACGTGCTACTGATCC
TACTACTGCAACCCTCCGTCCGGTTCGATCTTAGACTCGGAATGAACTCCGTAT
Found at i:35283022 original size:158 final size:159
Alignment explanation
Indices: 35282521--35283022 Score: 561
Period size: 158 Copynumber: 3.2 Consensus size: 159
35282511 ACTCCGTATG
* *
35282521 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
** * * * *
35282586 CGGTC-AGAGAGGCAGAATGCATAAGTCGGGGATCGGCCTGGTCCCCCCTACGTGCTGTCGATCC
66 CGGTCGA-AGAGGCAGAATGCGCAAGTCGGGGATCAGCCCGATCCCCCCTGCGTGCTGTCGATCC
* ***** * *
35282650 TACTATTGGAACCCTCCGTCCGGT-TCGAT
130 TGCTGCCACAACCCTCAGTCCGATCTCGAT
* * * *
35282679 CTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCACTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * *
35282743 CCGGCCGATGAGGAATAATGCGCAGGTCGGGGATCCA-CCCGATCCCCCTCTGTGTGCTGCCGAT
65 CCGGTCGAAGAGGCAGAATGCGCAAGTCGGGGAT-CAGCCCGATCCCCC-CTGCGTGCTGTCGAT
* * **
35282807 CCCGCTGCCACAACCCTCAGTCCGA-CTGGGG
128 CCTGCTGCCACAACCCTCAGTCCGATCTCGAT
* * * *
35282838 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGCGCTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
35282903 CGGTCGAAGAGGCAGAATGCGCAAG-CTGGGGATCAGCCCGATCCCCCCTGCGTGCTGTCGATCC
66 CGGTCGAAGAGGCAGAATGCGCAAGTC-GGGGATCAGCCCGATCCCCCCTGCGTGCTGTCGATCC
*
35282967 TGCTGCCACAACCCTCGGTCCGATCT-GAT
130 TGCTGCCACAACCCTCAGTCCGATCTCGAT
*
35282996 CTTAGAC-TAGGAATGAACTCCATATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
35283023 TTAGACTGGG
Statistics
Matches: 283, Mismatches: 51, Indels: 20
0.80 0.14 0.06
Matches are distributed among these distances:
157 2 0.01
158 154 0.54
159 126 0.45
160 1 0.00
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGTCGAAGAGGCAGAATGCGCAAGTCGGGGATCAGCCCGATCCCCCCTGCGTGCTGTCGATCCT
GCTGCCACAACCCTCAGTCCGATCTCGAT
Found at i:35283037 original size:26 final size:26
Alignment explanation
Indices: 35282996--35283048 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
35282986 CCGATCTGAT
35282996 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* * *
35283022 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
35283048 C
1 C
35283049 CTATGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:35283688 original size:26 final size:27
Alignment explanation
Indices: 35283652--35283705 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
35283642 TCAGTCTGAT
35283652 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTGGGGAATGAACTCCGTATG
* **
35283678 CTTAGGCTGGGGGTTGAACTCCGTATG
1 CTTAGACTGGGGAATGAACTCCGTATG
35283705 C
1 C
35283706 CTAAGTCAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 7 0.29
27 17 0.71
ACGTcount: A:0.20, C:0.20, G:0.31, T:0.28
Consensus pattern (27 bp):
CTTAGACTGGGGAATGAACTCCGTATG
Found at i:35284374 original size:158 final size:158
Alignment explanation
Indices: 35283826--35284678 Score: 771
Period size: 158 Copynumber: 5.4 Consensus size: 158
35283816 ATCCTACTGC
* ** ** *
35283826 CGATCCTGTTGCCACAACCCTCGGTCC-AGTTGGGGCTTAGAC-ATGGAATGAACTCCATATGCC
1 CGATCCTGCTGCCACAACCCTCGGTCCGA-TCCGATCTTAGACTA-GGAATGAACTCCGTATGCC
* * * * * * * *
35283889 TAAGCCAACCCACGAAATGAACGTGCGGGCACTTAGCCGGTC-GAGAGGCAAAATACGCAAGCCA
64 TAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCGGAGAGGCAAAATGCGCAAGCCG
* * *
35283953 GGGATCGACCCGACCCCCCCTGTGTGCTGT
129 GGGATCGGCCCGATCCCCCCTGCGTGCTGT
* * *
35283983 CGATCCTGCTGCCGCAACCCTCGATCTGATCCGATCTTAGACT-GGCAATGAACTCCGTATGCCT
1 CGATCCTGCTGCCACAACCCTCGGTCCGATCCGATCTTAGACTAGG-AATGAACTCCGTATGCCT
** * * * * * *
35284047 AAGTTAACCCATGAAACGAGCGTGCGGGCGCTGAGCCGGTCGGAGAGGCATAATGCGCAAGTCGG
65 AAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCGGAGAGGCAAAATGCGCAAGCCGG
* * ** ** *
35284112 GGATCGGCCTGGTCTTTCGATGTGTGCTGT
130 GGATCGGCCCGATC-CCCCCTGCGTGCTGT
* * * ** * *
35284142 CGATCCTGCTGCCACAACCCTCGG-CCTAGCTGGGGCCTAGAC-ATGGAATAAACTCCGTATGCC
1 CGATCCTGCTGCCACAACCCTCGGTCCGATC-CGATCTTAGACTA-GGAATGAACTCCGTATGCC
* *
35284205 TAAGCCAACCCACGAAACAAGCATGCGGGCGCTCAGCCAGCCGGAGAGGCAAAATGCGCAAGCCG
64 TAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCGGAGAGGCAAAATGCGCAAGCCG
*
35284270 GGGATCGGCCC-AGTCCCCCCTGCGTACTGT
129 GGGATCGGCCCGA-TCCCCCCTGCGTGCTGT
* * * *
35284300 CGATCCTGTTGTCGCAACCCTTGGTCCGATCCGATCTTAGACTAGGAATGAACTCCGTATGCCTA
1 CGATCCTGCTGCCACAACCCTCGGTCCGATCCGATCTTAGACTAGGAATGAACTCCGTATGCCTA
* * * * * * * *
35284365 AGTCAACCCACAAAACGAGCGTGTGGGCACTGAGCCAACCGGAGAGGCATAATGCGCAAGTCGGG
66 AGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCGGAGAGGCAAAATGCGCAAGCCGGG
* *
35284430 GAATCAGCCCGATCCCCCTCTGCGTGCT-A
131 G-ATCGGCCCGATCCCCC-CTGCGTGCTGT
* * * *
35284459 CTGGTCCTACTGCCACAACCCTCGGTCTGA--CTAGTGCTTAGACATA-GAATGAACTTCC-TAT
1 C-GATCCTGCTGCCACAACCCTCGGTCCGATCCGA-T-CTTAGAC-TAGGAATGAAC-TCCGTAT
* * * * *
35284520 GCCTAAGCCAACCCAAGAAACGGGTGTGTGGGCGCTCAGCC-GACCGGAGAGGCAGAATGCGCAA
61 GCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAG-CCGGAGAGGCAAAATGCGCAA
* * * * **
35284584 GCCAGGGATCGACCCGATCCCCCCTACATGCTAC
125 GCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGT
** * *
35284618 CGATCCTGCTATCACAACCCTCGGTCCAATCCAATCTTAGACT-GGAATGAACTCCGTATGC
1 CGATCCTGCTGCCACAACCCTCGGTCCGATCCGATCTTAGACTAGGAATGAACTCCGTATGC
35284679 TTAGACTTGA
Statistics
Matches: 560, Mismatches: 111, Indels: 50
0.78 0.15 0.07
Matches are distributed among these distances:
156 5 0.01
157 97 0.17
158 183 0.33
159 159 0.28
160 111 0.20
161 5 0.01
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (158 bp):
CGATCCTGCTGCCACAACCCTCGGTCCGATCCGATCTTAGACTAGGAATGAACTCCGTATGCCTA
AGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCGGAGAGGCAAAATGCGCAAGCCGGG
GATCGGCCCGATCCCCCCTGCGTGCTGT
Found at i:35284400 original size:317 final size:314
Alignment explanation
Indices: 35283826--35284678 Score: 1016
Period size: 318 Copynumber: 2.7 Consensus size: 314
35283816 ATCCTACTGC
* *
35283826 CGATCCTGTTGCCACAACCCTCGGTCC-AGTTGGGGCTTAGACATGGAATGAACTCCATATGCCT
1 CGATCCTGCTGCCACAACCCTCGG-CCTAGCTGGGGCTTAGACATGGAATGAACTCC-TATGCCT
* * * * *
35283890 AAGCCAACCCACGAAATGAA-CGTGCGGGCACTTAGCCGGTC-GAGAGGCAAAATACGCAAGCCA
64 AAGCCAACCCACGAAA-CAAGCGTGCGGGCGCTCAGCC-GCCGGAGAGGCAAAATGCGCAAGCCA
* * * * *
35283953 GGGATCGACCCGACCCCCCCTGTGTGCTGTCGATCCTGCTGCCGCAACCCTCGATCTGATCCGAT
127 GGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCCTGCTGTCGCAACCCTCGGTCCGATCCGAT
* ** *
35284018 CTTAGACTGGCAATGAACTCCGTATGCCTAAGTTAACCCATGAAACGAGCGTGCGGGCGCTGAGC
192 CTTAGACTGG-AATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCACTGAGC
*** * * * *** * *
35284083 CGGTCGGAGAGGCATAATGCGCAAGTCGGGG-ATCGGCCTGGTCTTTCGATGTGTGCTGT
256 CAACCGGAGAGGCATAATGCGCAAGTCGGGGAATCAGCCCGATCCCCCGATGCGTGCT-A
* *
35284142 CGATCCTGCTGCCACAACCCTCGGCCTAGCTGGGGCCTAGACATGGAATAAACTCCGTATGCCTA
1 CGATCCTGCTGCCACAACCCTCGGCCTAGCTGGGGCTTAGACATGGAATGAACTCC-TATGCCTA
* *
35284207 AGCCAACCCACGAAACAAGCATGCGGGCGCTCAGCCAGCCGGAGAGGCAAAATGCGCAAGCCGGG
65 AGCCAACCCACGAAACAAGCGTGCGGGCGCTCAGCC-GCCGGAGAGGCAAAATGCGCAAGCCAGG
* * * *
35284272 GATCGGCCC-AGTCCCCCCTGCGTACTGTCGATCCTGTTGTCGCAACCCTTGGTCCGATCCGATC
129 GATCGACCCGA-TCCCCCCTGCGTGCTGTCGATCCTGCTGTCGCAACCCTCGGTCCGATCCGATC
*
35284336 TTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGTGGGCACTGAGCC
193 TTAGACT-GGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCACTGAGCC
**
35284401 AACCGGAGAGGCATAATGCGCAAGTCGGGGAATCAGCCCGATCCCCCTCTGCGTGCTA
257 AACCGGAGAGGCATAATGCGCAAGTCGGGGAATCAGCCCGATCCCCCGATGCGTGCTA
* * * * * *
35284459 CTGGTCCTACTGCCACAACCCTCGGTCT-GACTAGTGCTTAGACATAGAATGAACTTCCTATGCC
1 C-GATCCTGCTGCCACAACCCTCGGCCTAG-CTGGGGCTTAGACATGGAATGAAC-TCCTATGCC
* ** * * *
35284523 TAAGCCAACCCAAGAAACGGGTGTGTGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCA
63 TAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCG-CCGGAGAGGCAAAATGCGCAAGCCA
* * ** * * * *
35284588 GGGATCGACCCGATCCCCCCTACATGCTACCGATCCTGCTATCACAACCCTCGGTCCAATCCAAT
127 GGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCCTGCTGTCGCAACCCTCGGTCCGATCCGAT
35284653 CTTAGACTGGAATGAACTCCGTATGC
192 CTTAGACTGGAATGAACTCCGTATGC
35284679 TTAGACTTGA
Statistics
Matches: 458, Mismatches: 68, Indels: 21
0.84 0.12 0.04
Matches are distributed among these distances:
315 4 0.01
316 89 0.19
317 180 0.39
318 181 0.40
319 4 0.01
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (314 bp):
CGATCCTGCTGCCACAACCCTCGGCCTAGCTGGGGCTTAGACATGGAATGAACTCCTATGCCTAA
GCCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGCCGGAGAGGCAAAATGCGCAAGCCAGGGA
TCGACCCGATCCCCCCTGCGTGCTGTCGATCCTGCTGTCGCAACCCTCGGTCCGATCCGATCTTA
GACTGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCACTGAGCCAACC
GGAGAGGCATAATGCGCAAGTCGGGGAATCAGCCCGATCCCCCGATGCGTGCTA
Found at i:35284700 original size:26 final size:25
Alignment explanation
Indices: 35284653--35284704 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
35284643 CCAATCCAAT
*
35284653 CTTAGACTGGAATGAACTCCGTATG
1 CTTAGACTGGAATAAACTCCGTATG
*
35284678 CTTAGACTTGAGATAAACTCCGTATG
1 CTTAGACTGGA-ATAAACTCCGTATG
35284704 C
1 C
35284705 CTAAGTCAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 10 0.42
26 14 0.58
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (25 bp):
CTTAGACTGGAATAAACTCCGTATG
Found at i:35285219 original size:26 final size:26
Alignment explanation
Indices: 35285179--35285229 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
35285169 CCGGTTTGAT
*
35285179 CTTAGACTGGCAATGAACTTCGTATA
1 CTTAGACTGGCAATGAACTCCGTATA
35285205 CTTAGACTAGG-AATGAACTCCGTAT
1 CTTAGACT-GGCAATGAACTCCGTAT
35285230 GCCTAAGTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCGTATA
Found at i:35285417 original size:527 final size:527
Alignment explanation
Indices: 35284335--35285431 Score: 1213
Period size: 527 Copynumber: 2.1 Consensus size: 527
35284325 CCGATCCGAT
* * * ** *
35284335 CTTAGAC-TAGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGTGGGCACTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGACCGTGCGAACACTGAA
* * *
35284399 CCAACCGGAGAGGCATAATGCGCAAGTCGGGGAATCAGCCCGATCCCCCTCTGCGTGCTACTGGT
65 CCAACCGGAGAGGCATAATACGCAAGCCGAGGAATCAGCCCGATCCCCCTCTGCGTGCTACTGGT
* * * * * *
35284464 CCTACTGCCACAACCCTCGGTCTGACTAGTGCTTAGACATAGAATGAACTTCCTATGCCTAAGCC
130 CCCACTGCCACAACCCTCAGTCCGACTAGGGCTTAGACATAGAATGAACTCCCTATGCCTAAACC
* ** *
35284529 AACCCAAGAAACGGGTGTGTGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCAGGGATC
195 AAACCAAGAAACGGGTGTGCAGGCACTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCAGGGATC
*
35284594 GACCCGATCCCCCCTACATGCTACCGATCCTGCTATCACAACCCTCGGTCCAATCCAATCTTAGA
260 GACCCGATCCCCCCTACATGCTACCGATCCTACTATCACAACCCTCGGTCCAATCCAATCTTAGA
* * ** *
35284659 CTGGAATGAACTCCGTATGCTTAGACTTGAGATAAACTCCGTATGCCTAAGTCAATGCATGAAAC
325 CTGGAATGAACTCCGTATACTTAGACTGGAGATAAACTCCGTATGCCTAAGTCAACACATAAAAC
* * * * * *
35284724 GAGCGTACGGGCGCTCAGCTGACCAGAAAGGCCAGCCGAAAAGGCATAATGCATAAGCCAGGGAT
390 GAGCGTACGGGCACTCAACCGACCAGAAAGGCAAGCCGAAAAGGCATAATACATAAGCCAAGGAT
* * ** * * * *
35284789 CAGCCCAATCCCCCTCTGCGTGCTACTGATCCCGCTATTGGTCCTGCTAGCACAACCCTTGGTCT
455 CAACCCAATCCCCCTCTACGTGCTACTGATCCCGCTATCAGTCCTACTAGCACAACCCTCGATCC
35284854 AACTGGGG
520 AACTGGGG
* * * **
35284862 CTTAAACATGGAATGAACTCCGTATGCCTAAGCCAACCCTCGAAACGACCGTGCGAATGCTGAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGACCGTGCGAACACTGAAC
** * * *
35284927 CGGCCGGAGAGGCATAATACGTAAGCCGAGG-ATC-GACCCGATCCCCCTCTGTGTGCT-GTCGG
66 CAACCGGAGAGGCATAATACGCAAGCCGAGGAATCAG-CCCGATCCCCCTCTGCGTGCTACT-GG
* * *
35284989 TCCCACTGCCACAACCCTCAGTCCGATTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAAC
129 TCCCACTGCCACAACCCTCAGTCCGACTAGGGCTTAGACATAGAATGAACTCCCTATGCCTAAAC
* * * * * * * *
35285054 CAAAGCACGAAACGGGTGTGCAGGCACTCAGTCGACTGGGGAGGGAGAATGCGTAAGTCAGGGAT
194 CAAACCAAGAAACGGGTGTGCAGGCACTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCAGGGAT
* ** * * * ** ***
35285119 C-AGCCCGATCCCTCCTACATGCTGTCGATCCTACT-GCTGCAAGCCTCGGTCCGGTTTGATCTT
259 CGA-CCCGATCCCCCCTACATGCTACCGATCCTACTATC-ACAACCCTCGGTCCAATCCAATCTT
* *
35285182 AGACTGGCAATGAACTTCGTATACTTAGACTAGGA-ATGAACTCCGTATGCCTAAGTCAACACAT
322 AGACTGG-AATGAACTCCGTATACTTAGACT-GGAGATAAACTCCGTATGCCTAAGTCAACACAT
* * * * * * * *
35285246 AAAATGAGTGTACGGGCACTCAACCGACCGGAGAGGCAAGTCGGAGAGGCATAATACGTAAGCCA
385 AAAACGAGCGTACGGGCACTCAACCGACCAGAAAGGCAAGCCGAAAAGGCATAATACATAAGCCA
* * * * ** *
35285311 AGGTTCAACCCGATCCCTCTCTACGTGCT-GTCGATCTTGCTGTCAGTCCTACT-GCCACAACCC
450 AGGATCAACCCAATCCCCCTCTACGTGCTACT-GATCCCGCTATCAGTCCTACTAG-CACAACCC
***
35285374 TCGATCCGGTTGGGG
513 TCGATCCAACTGGGG
* *
35285389 CTTAGACATGGAATGAACTCCATATGCCTAAACCAACCCACAA
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAA
35285432 GATGAACGTG
Statistics
Matches: 465, Mismatches: 96, Indels: 18
0.80 0.17 0.03
Matches are distributed among these distances:
525 4 0.01
526 190 0.41
527 268 0.58
528 3 0.01
ACGTcount: A:0.27, C:0.29, G:0.24, T:0.20
Consensus pattern (527 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGACCGTGCGAACACTGAAC
CAACCGGAGAGGCATAATACGCAAGCCGAGGAATCAGCCCGATCCCCCTCTGCGTGCTACTGGTC
CCACTGCCACAACCCTCAGTCCGACTAGGGCTTAGACATAGAATGAACTCCCTATGCCTAAACCA
AACCAAGAAACGGGTGTGCAGGCACTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCG
ACCCGATCCCCCCTACATGCTACCGATCCTACTATCACAACCCTCGGTCCAATCCAATCTTAGAC
TGGAATGAACTCCGTATACTTAGACTGGAGATAAACTCCGTATGCCTAAGTCAACACATAAAACG
AGCGTACGGGCACTCAACCGACCAGAAAGGCAAGCCGAAAAGGCATAATACATAAGCCAAGGATC
AACCCAATCCCCCTCTACGTGCTACTGATCCCGCTATCAGTCCTACTAGCACAACCCTCGATCCA
ACTGGGG
Found at i:35286278 original size:26 final size:26
Alignment explanation
Indices: 35286240--35286292 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35286230 GGCTCAAAAT
*
35286240 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35286266 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
35286292 C
1 C
35286293 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35286788 original size:26 final size:26
Alignment explanation
Indices: 35286738--35286788 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
35286728 CTGGTCCGAT
**
35286738 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35286764 CTTAGACTAGGG-ATGAACTCCGTAT
1 CTTAGACT-GGGAATGAACTCCGTAT
35286789 TCCTAAGTCA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35287205 original size:159 final size:159
Alignment explanation
Indices: 35286910--35287205 Score: 349
Period size: 159 Copynumber: 1.9 Consensus size: 159
35286900 GGTCCTACTA
* * * * * *
35286910 CCATAACCCTCGGTCTGGCTAGGGCTTAGACATGGAATGAACTCCGTATGCTTAAGTCGACCCAT
1 CCATAACCCTCAGTCTGGCTAGGGCTTAGACATCGAATGAACTCCGTATGCCTAAGCCAACCCAC
* * * * * * * *
35286975 GGAATGAGCGTACGAGCGTTGAGCCGGCCGAAGAGGAACAATGCACAACCCGAGGATCGGCTCGG
66 GAAACGAGCATACGAGCGCTCAGCCGGCCGAAGAGGAACAATGCACAACCCGAGGATCGACCCGA
*
35287040 TTCCCCTCTGTGTGCTGTCGGTCCCGCTT
131 TCCCCCTCTGTGTGCTGTCGGTCCCGCTT
* *
35287069 CCATAACCCTCAGTCTGGCTGGGGCTTAGACATCGAATGAACTCCTTATGCCTAAGCCAACCCAC
1 CCATAACCCTCAGTCTGGCTAGGGCTTAGACATCGAATGAACTCCGTATGCCTAAGCCAACCCAC
* * * * * * ** * *
35287134 GAAACGAGCATGCGGGCGCTCAGTCGGCCGAAGTGGCAGAATGCGTAAGCCGGGGATCGACCCGA
66 GAAACGAGCATACGAGCGCTCAGCCGGCCGAAGAGGAACAATGCACAACCCGAGGATCGACCCGA
35287199 TCCCCCT
131 TCCCCCT
35287206 GCGTGCTATC
Statistics
Matches: 110, Mismatches: 27, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
159 110 1.00
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (159 bp):
CCATAACCCTCAGTCTGGCTAGGGCTTAGACATCGAATGAACTCCGTATGCCTAAGCCAACCCAC
GAAACGAGCATACGAGCGCTCAGCCGGCCGAAGAGGAACAATGCACAACCCGAGGATCGACCCGA
TCCCCCTCTGTGTGCTGTCGGTCCCGCTT
Found at i:35287647 original size:26 final size:26
Alignment explanation
Indices: 35287611--35287663 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
35287601 CCGAGCAAAT
35287611 CTTAGACTGGGAATGAACTACGTATG
1 CTTAGACTGGGAATGAACTACGTATG
* *
35287637 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTACGTATG
35287663 C
1 C
35287664 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:35288823 original size:26 final size:26
Alignment explanation
Indices: 35288787--35288839 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
35288777 CTGGTCTGAT
35288787 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
35288813 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
35288839 C
1 C
35288840 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:35289262 original size:158 final size:157
Alignment explanation
Indices: 35288955--35289262 Score: 388
Period size: 158 Copynumber: 1.9 Consensus size: 157
35288945 TACTGGTACT
* *
35288955 GCTGCCACAACCCTCGATCTGGCTGGGGCATAGACAAGGAATGAACTCCGTATGCCTAAGCCAAC
1 GCTGCCACAACCCTCGATCCGACTGGGGCATAGACAAGGAATGAACTCCGTATGCCTAAGCCAAC
* *
35289020 CCATAAACAAGCATACGGGCATCGTCCCGGCCGGAGAGGCATAATACGTAAGACGGGGATCGACC
66 CCATAAACAAGCATACGGGCATCG-CCCGGCCGAAGAGGCAAAATACGTAAGACGGGGATCGACC
*
35289085 CGATCCCCCTCTACGTGCTGCCAGTCCC
130 CGATCCCCCTCTACATGCTGCCAGTCCC
* * * *
35289113 GCTGCCACAACCCTC-AGTCCGACTGGGGCTTAGACATGGAATGAACTCCTTATGGCTAAGCCAA
1 GCTGCCACAACCCTCGA-TCCGACTGGGGCATAGACAAGGAATGAACTCCGTATGCCTAAGCCAA
** ** * * * *
35289177 CCCATGAAACGGGTGTGCGGGCGCTCAG-CCGGCCGAAGAGGCAAAATGCGTAAGCCGGGGATCG
65 CCCAT-AAACAAGCATACGGGC-ATC-GCCCGGCCGAAGAGGCAAAATACGTAAGACGGGGATCG
*
35289241 ACCCGATCCCCC-CTGCATGCTG
127 ACCCGATCCCCCTCTACATGCTG
35289263 TCGATCCTAC
Statistics
Matches: 128, Mismatches: 18, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
157 1 0.01
158 69 0.54
159 55 0.43
160 2 0.02
161 1 0.01
ACGTcount: A:0.25, C:0.32, G:0.27, T:0.16
Consensus pattern (157 bp):
GCTGCCACAACCCTCGATCCGACTGGGGCATAGACAAGGAATGAACTCCGTATGCCTAAGCCAAC
CCATAAACAAGCATACGGGCATCGCCCGGCCGAAGAGGCAAAATACGTAAGACGGGGATCGACCC
GATCCCCCTCTACATGCTGCCAGTCCC
Found at i:35289335 original size:26 final size:26
Alignment explanation
Indices: 35289299--35289351 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
35289289 CTGGTCTGAT
*
35289299 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
*
35289325 CTTAGAATGGGGATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
35289351 C
1 C
35289352 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Found at i:35290559 original size:26 final size:26
Alignment explanation
Indices: 35290518--35290570 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35290508 CCAGTCTGAT
*
35290518 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35290544 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
35290570 C
1 C
35290571 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35297136 original size:26 final size:26
Alignment explanation
Indices: 35297098--35297150 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35297088 GGCTCAAAAT
*
35297098 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTATATG
35297124 CTTAGACAT-GGAATGAACTCTATATG
1 CTTAGAC-TGGGAATGAACTCTATATG
35297150 C
1 C
35297151 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTATATG
Found at i:35297485 original size:158 final size:157
Alignment explanation
Indices: 35297123--35297624 Score: 503
Period size: 158 Copynumber: 3.2 Consensus size: 157
35297113 AACTCTGTAT
* * * *
35297123 GCTTAGACATGGAATGAACTCTATATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAG
** * * *
35297188 TAGATCGGAGAGGCAGAATGAGCAAGCCGGGGATCGACCCGATCCCCCCCTGTGTGCTATCGAGC
66 CCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCG-CCCGAT--CCCCCTGCGTGCTATCGATC
* ** * * *
35297253 CTTCTATCGCAACCCTTGGT-TCGCTCTGA
128 CTACTGCCGCAACCCTCGGTCTGGCTCGGA
* * * * ** * * *
35297282 TCCT--ACATTGGGAATGAACTCCGTATGCATAAGTGAGCCCATGAAACGAGCATGCGGGCACTG
1 GCTTAGACA-T-GGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTC
* * * *
35297345 AGCCGGTCGAAGAGGCATAATGCGCAAGCCGGGGATCAGCCCGATCCCCTCTGCGTGCTGTCGAT
64 AGCCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATC-GCCCGATCCCC-CTGCGTGCTATCGAT
* * *
35297410 CCTGCTGCCACAACCCTCGGTCTGGCT-GGG
127 CCTACTGCCGCAACCCTCGGTCTGGCTCGGA
* * *
35297440 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGTGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAG
* * *
35297505 CCGATCGGAGGGGCAGAATGCGCAAGCCGGGGATCGGCCTGGTCCCCCTGCGTGCTATCGATCCT
66 CCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATC-GCCCGATCCCCCTGCGTGCTATCGATCCT
* *
35297570 ACTGCTGCAACCCTCGGTCTGG-TCTGA
130 ACTGCCGCAACCCTCGGTCTGGCTCGGA
* * *
35297597 TCTTAGAC-TGTGAGTGAACTCCGTATGC
1 GCTTAGACATG-GAATGAACTCCATATGC
35297625 TTAGACTGGG
Statistics
Matches: 277, Mismatches: 57, Indels: 20
0.78 0.16 0.06
Matches are distributed among these distances:
156 3 0.01
157 66 0.24
158 118 0.43
159 86 0.31
160 4 0.01
ACGTcount: A:0.22, C:0.29, G:0.29, T:0.20
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAG
CCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGCCCGATCCCCCTGCGTGCTATCGATCCTA
CTGCCGCAACCCTCGGTCTGGCTCGGA
Found at i:35297996 original size:26 final size:25
Alignment explanation
Indices: 35297959--35298017 Score: 77
Period size: 26 Copynumber: 2.4 Consensus size: 25
35297949 CCTCAGTCTG
35297959 GTCCG-ATCTTAGAC-TGGGAATGAA
1 GTCCGTATCTTAGACAT-GGAATGAA
35297983 GTCCGTATGCTTAGACATGGAATGAA
1 GTCCGTAT-CTTAGACATGGAATGAA
*
35298009 CTCCGTATC
1 GTCCGTATC
35298018 CCTAAGCCAA
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
24 5 0.16
25 3 0.10
26 22 0.71
27 1 0.03
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (25 bp):
GTCCGTATCTTAGACATGGAATGAA
Found at i:35298190 original size:25 final size:26
Alignment explanation
Indices: 35298162--35298213 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
35298152 CCGGTCTGAT
35298162 CTTAGAC-TGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCTGTATG
35298187 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCTGTATG
35298213 C
1 C
35298214 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 7 0.27
26 19 0.73
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.31
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCTGTATG
Found at i:35298263 original size:195 final size:195
Alignment explanation
Indices: 35297943--35298317 Score: 520
Period size: 195 Copynumber: 1.9 Consensus size: 195
35297933 ATCCTACTGC
* *
35297943 CGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAAGTCCGTATGCTTAGACATGGAATGA
1 CGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGA
* * **
35298008 ACTCCGTATCCCTAAGCCAACCCACGAAATGAGCATGCGGGTGCTCAGTCGACCGGAGAGGCAGA
66 ACTCCGTATCCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAACCGACCGGAGAGGCAGA
* *
35298073 ATCTGCAAG-TCGGGGATCGGCCCAGTCCCCCCCTGCGTGCTGCCGATCCTGCTGCTGGTCCTGC
131 ATCGGCAAGCT-GGGGATCGGCCCAGT-CCCCCCTGCGTGCTGCCAATCCTGCTGCTGGTCCTGC
35298137 TA
194 TA
* * *
35298139 CGCAACCCTCGGTCCGGTCTGATCTTAGACT-GGAATGAACTCTGTATGCTTAGACATGGAATGA
1 CGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGA
* * * ***
35298203 ACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGTTGGAGAGGCAGA
66 ACTCCGTATCCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAACCGACCGGAGAGGCAGA
* * ** *
35298268 ATGGGCAAGCTGGGGATTGGCCTGGTCCCCCCTGCGTGCTGTCAATCCTG
131 ATCGGCAAGCTGGGGATCGGCCCAGTCCCCCCTGCGTGCTGCCAATCCTG
35298318 TTGTCATAAC
Statistics
Matches: 156, Mismatches: 22, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
194 22 0.14
195 105 0.67
196 29 0.19
ACGTcount: A:0.22, C:0.29, G:0.29, T:0.21
Consensus pattern (195 bp):
CGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGA
ACTCCGTATCCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAACCGACCGGAGAGGCAGA
ATCGGCAAGCTGGGGATCGGCCCAGTCCCCCCTGCGTGCTGCCAATCCTGCTGCTGGTCCTGCTA
Found at i:35298558 original size:159 final size:158
Alignment explanation
Indices: 35298186--35298601 Score: 478
Period size: 159 Copynumber: 2.6 Consensus size: 158
35298176 AACTCTGTAT
*
35298186 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * ** * * *
35298251 CCGGTTGGAGAGGCAGAATGGGCAAGCTGGGGATTGGCCTGGTCCCCCCTGCGTGCTGTCAATCC
66 CCGGTCGGAGAGGCAAAATGCGCAAGCCGGGGATCAGCCTGGTCCCCCCTACGAGCTGCCAATCC
* * * *
35298316 TGTTGTCATAACCCTCGGTCTGGTCCGA
131 CGCTGCCACAACCCTCGGTCTGGTCCGA
* * * * * *
35298344 TCTTAGAC-TGGGAATGAACTTTGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * **
35298408 GCCGGCCAGAGAGGCATAATGCGCAAGCCAGGGATCAGCCTGGTCCCCCTCTACGAGCTGCCGGT
65 GCCGGTCGGAGAGGCAAAATGCGCAAGCCGGGGATCAGCCTGGTCCCCC-CTACGAGCTGCCAAT
* *
35298473 CCCGCTGCCACAACCCTCGGTCTGG-CTGGG
129 CCCGCTGCCACAACCCTCGGTCTGGTC-CGA
** * *
35298503 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACG-GACGTGCGGCCGCTCA
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAG-CGTGCGGGCGCTCA
*
35298567 GCCGGTCGGAGAGGTAAAATGCGCAAGCCGGGGAT
65 GCCGGTCGGAGAGGCAAAATGCGCAAGCCGGGGAT
35298602 TGGCTCGATC
Statistics
Matches: 211, Mismatches: 42, Indels: 9
0.81 0.16 0.03
Matches are distributed among these distances:
157 1 0.00
158 97 0.46
159 112 0.53
160 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.30, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGGTCGGAGAGGCAAAATGCGCAAGCCGGGGATCAGCCTGGTCCCCCCTACGAGCTGCCAATCC
CGCTGCCACAACCCTCGGTCTGGTCCGA
Found at i:35298690 original size:26 final size:26
Alignment explanation
Indices: 35298661--35298713 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
35298651 TCAATTCGAT
* * *
35298661 CTTAGACTTGGAATGAACTTCGTATG
1 CTTAGACATAGAATGAACTCCGTATG
35298687 CTTAGACATAGAATGAACTCCGTATG
1 CTTAGACATAGAATGAACTCCGTATG
35298713 C
1 C
35298714 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTAGACATAGAATGAACTCCGTATG
Found at i:35299904 original size:158 final size:157
Alignment explanation
Indices: 35299413--35299904 Score: 424
Period size: 159 Copynumber: 3.1 Consensus size: 157
35299403 GCCTAGACAT
*
35299413 GGAATGAACTCTGTATGCCTAAGCTAACCCACGAAACGAGCGTGA-GGGCACATAGTCGACCGAA
1 GGAATGAACTCTGTATGCCTAAGCTAACCCACGAAACGAGCGT-ACGGGCAC-TAGTCGACCGGA
* * * * * * *
35299477 GAGGCAGAATGCACAAGTCGAGGATCGACTCGATCCCCCTTGCGTGCTATCGATCTTG-GGCCAC
64 GAGACGGAATGCACAAGTCGAGGATCGGCCCGATCCCCCCTGCGTGCTATCGATCCTGCTGCCAC
* *
35299541 AACCCTCGGTCCGATCCGATCTTACACTG
129 AACCCTCGGTCCGATTCGATCTTAGACTG
* * * * * * *** * *
35299570 GGATTGAACT-TCATATGCATAAG-TCAACCCATGAAATGAGCGTGCGGGTGTTGAGCCGATC-G
1 GGAATGAACTCT-GTATGCCTAAGCT-AACCCACGAAACGAGCGTACGGGCACT-AGTCGACCGG
* ** * * * *
35299632 A-A-ACGGCATAATGCACAAGTCGGGGATTAGCCCGGTCCCTCTCTGCGTGCTGTCGGTCCTGCT
63 AGAGACGG---AATGCACAAGTCGAGGATCGGCCCGATCCC-CCCTGCGTGCTATCGATCCTGCT
* * * *
35299695 GCCATAACCCTCGGTCCGGTTGGGTCTTAGACAT-
124 GCCACAACCCTCGGTCCGATTCGATCTTAGAC-TG
* ** * *
35299729 AGAATGAACTCCCTATGCCTAAGCTAACCCACGAAACGGGCGTACGGGCACTCAGTCGGCCGGAG
1 GGAATGAACTCTGTATGCCTAAGCTAACCCACGAAACGAGCGTACGGGCACT-AGTCGACCGGAG
* ** * * *
35299794 AGACGGAATGCGCAAGTCGAGGATCGGCCCGATCCCCCCTATGTGCTACCGATCCTGCTGTCGCA
65 AGACGGAATGCACAAGTCGAGGATCGGCCCGATCCCCCCTGCGTGCTATCGATCCTGCTGCCACA
* *
35299859 ACCCTCGGTCCTATTTGATCTTAGACTG
130 ACCCTCGGTCCGATTCGATCTTAGACTG
35299887 GGAATGAACTCTGTATGC
1 GGAATGAACTCTGTATGC
35299905 TTAGACTGGG
Statistics
Matches: 250, Mismatches: 69, Indels: 31
0.71 0.20 0.09
Matches are distributed among these distances:
154 2 0.01
155 1 0.00
156 4 0.02
157 68 0.27
158 73 0.29
159 93 0.37
160 4 0.02
161 1 0.00
162 4 0.02
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (157 bp):
GGAATGAACTCTGTATGCCTAAGCTAACCCACGAAACGAGCGTACGGGCACTAGTCGACCGGAGA
GACGGAATGCACAAGTCGAGGATCGGCCCGATCCCCCCTGCGTGCTATCGATCCTGCTGCCACAA
CCCTCGGTCCGATTCGATCTTAGACTG
Found at i:35299914 original size:26 final size:26
Alignment explanation
Indices: 35299878--35299930 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
35299868 CCTATTTGAT
*
35299878 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
35299904 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35299930 C
1 C
35299931 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35300195 original size:171 final size:171
Alignment explanation
Indices: 35299903--35300212 Score: 424
Period size: 171 Copynumber: 1.8 Consensus size: 171
35299893 AACTCTGTAT
* * * * *
35299903 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATATGGGCACTCAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAACCATGAAACGAGCATATAGGCACTAAG
* * ** * * *
35299968 CCGACCGGAGTGGCATAATGTGCAAGCTGGGGATCAGCCCGGTCCCTCTTTGCGTGCTGTCGATC
66 CCGACCGGAGAGGCATAATGCGCAAGCCAGGGATCAGCCCGGTCCCCCTCTGCGTGCTGCCGATC
35300033 CCGCTGCCAGTCTTGCTGCCATAACCCTCGGTCTGGCTAGG
131 CCGCTGCCAGTCTTGCTGCCATAACCCTCGGTCTGGCTAGG
* * *
35300074 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAAACCATGAAACGAGCGTGTAGGCGCTAA
1 GCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAAACCATGAAACGAGCATATAGGCACTAA
* * * * *
35300138 GCCGGCTGGAGAGGCATAATGCGCAAGCCATGGATCAGCCTGGTCCCCCTCTGCGTGCTGCCGGT
65 GCCGACCGGAGAGGCATAATGCGCAAGCCAGGGATCAGCCCGGTCCCCCTCTGCGTGCTGCCGAT
35300203 CCCGCTGCCA
130 CCCGCTGCCA
35300213 CAACCCTCGG
Statistics
Matches: 118, Mismatches: 20, Indels: 2
0.84 0.14 0.01
Matches are distributed among these distances:
171 117 0.99
172 1 0.01
ACGTcount: A:0.21, C:0.30, G:0.29, T:0.20
Consensus pattern (171 bp):
GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAACCATGAAACGAGCATATAGGCACTAAG
CCGACCGGAGAGGCATAATGCGCAAGCCAGGGATCAGCCCGGTCCCCCTCTGCGTGCTGCCGATC
CCGCTGCCAGTCTTGCTGCCATAACCCTCGGTCTGGCTAGG
Found at i:35300344 original size:159 final size:158
Alignment explanation
Indices: 35300047--35300355 Score: 385
Period size: 159 Copynumber: 1.9 Consensus size: 158
35300037 TGCCAGTCTT
* * **
35300047 GCTGCCATAACCCTCGGTCTGGCTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAA
1 GCTGCCACAACCCTCGGTCTGACTAGGGCTTAGACATGGAATGAACTCCCAATGCCTAAGCCAAA
* *
35300112 CCATGAAACGAGCGTGTAGGCGCTAAGCCGGCTGGAGAGGCATAATGCGCAAGCCATGGATCAGC
66 CCATGAAACGAGCGTGCAGGCGCTAAGCCGGCTGGAGAGGCAGAATGCGCAAGCCATGGATCAGC
*
35300177 CTGGTCCCCCTCTGCGTGCTGCCGGTCCC
131 CTGATCCCCCT-TGCGTGCTGCCGGTCCC
35300206 GCTGCCACAACCCTCGGTC-GAAC-AGGGGCTTAGACATGGAATGAACTCCCAATGCCTAAGCCA
1 GCTGCCACAACCCTCGGTCTG-ACTA-GGGCTTAGACATGGAATGAACTCCCAATGCCTAAGCCA
* * * * * * *
35300269 ACCCATGAAACGGGCGTGCGGGTGCTCAGTCGG-TCGGAGAGGCAGAATGCGTAAGCCGA-GGAT
64 AACCATGAAACGAGCGTGCAGGCGCTAAGCCGGCT-GGAGAGGCAGAATGCGCAAGCC-ATGGAT
* *
35300332 C-GGCTCGATCCCCCTTGTGTGCTG
127 CAGCCT-GATCCCCCTTGCGTGCTG
35300356 TCGATCCTGC
Statistics
Matches: 129, Mismatches: 16, Indels: 11
0.83 0.10 0.07
Matches are distributed among these distances:
158 14 0.11
159 114 0.88
160 1 0.01
ACGTcount: A:0.22, C:0.29, G:0.30, T:0.18
Consensus pattern (158 bp):
GCTGCCACAACCCTCGGTCTGACTAGGGCTTAGACATGGAATGAACTCCCAATGCCTAAGCCAAA
CCATGAAACGAGCGTGCAGGCGCTAAGCCGGCTGGAGAGGCAGAATGCGCAAGCCATGGATCAGC
CTGATCCCCCTTGCGTGCTGCCGGTCCC
Found at i:35300424 original size:26 final size:26
Alignment explanation
Indices: 35300394--35300444 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
35300384 ATTTCGATCA
*
35300394 TAGACTGTGAATGAACTCCATATGCT
1 TAGACTGGGAATGAACTCCATATGCT
* *
35300420 TAGACTGGGGATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCATATGC
35300445 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCATATGCT
Found at i:35301401 original size:159 final size:158
Alignment explanation
Indices: 35301126--35301579 Score: 394
Period size: 159 Copynumber: 2.9 Consensus size: 158
35301116 AGACTGGGAG
** * * * * * *
35301126 TGAACTCTGTATGCCTAAGCCAACCCATGAAAC-GAGCATGCGGGCACTCAGCCGACCGAAGAGG
1 TGAACTCCCTATGCATAAGCCAACCCACGAAACGGA-CATGCAGGCGCTCAGCCGGCCGGAGAGG
* * ** * * * * * * * **
35301190 CAGAATGCACAAGTCAAGGATTGACCTGGTCCCCCCCTGCGTCCTATTGATCCTGCTGCCGTAAC
65 CAGAATGCGCAAGCCGGGGATCGACCCGAT-CCCCCCTGTGTGCTGTCGATCCTGCTGCCACAAC
* * * *
35301255 CCTCGGTTCGGTTCGATCTTACAC-TGGGTA
129 CCTCGGTCCGGTTCGAGCTTACACAT-AGAA
* * * * * * * *
35301285 TGAACTTCGTATGCATAAGTCAACCCACGAAACGAGA-GTGTAGGCGTTGAGCCGGCCGTAGAGG
1 TGAACTCCCTATGCATAAGCCAACCCACGAAACG-GACATGCAGGCGCTCAGCCGGCCGGAGAGG
* * * *
35301349 CATAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTCTGTGTGTTGTCGATCCCGCTGCCACAAC
65 CAGAATGCGCAAGCCGGGGATCGACCCGATCCCCC-CTGTGTGCTGTCGATCCTGCTGCCACAAC
* * * *
35301414 CTTCGGTCCGGTTGGGGCTTAGACATAGAA
129 CCTCGGTCCGGTTCGAGCTTACACATAGAA
* * * *
35301444 TGAACTCCCTATGCCTAAGCCAATCCACGAAACGGACATGCGGGCGCTCAGCCGGTCGGAGAGGC
1 TGAACTCCCTATGCATAAGCCAACCCACGAAACGGACATGCAGGCGCTCAGCCGGCCGGAGAGGC
* * *
35301509 AGGATGCGTAAGCCGGGGATCGACCCGATCCCCCCTGTGTGCTGTCAATCCTGCTGCCACAGA-C
66 AGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTGTGTGCTGTCGATCCTGCTGCCACA-ACC
35301573 CTCGGTC
130 CTCGGTC
35301580 TGGTCAGATC
Statistics
Matches: 233, Mismatches: 56, Indels: 13
0.77 0.19 0.04
Matches are distributed among these distances:
158 38 0.16
159 192 0.82
160 1 0.00
161 2 0.01
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.20
Consensus pattern (158 bp):
TGAACTCCCTATGCATAAGCCAACCCACGAAACGGACATGCAGGCGCTCAGCCGGCCGGAGAGGC
AGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTGTGTGCTGTCGATCCTGCTGCCACAACCC
TCGGTCCGGTTCGAGCTTACACATAGAA
Found at i:35301965 original size:26 final size:26
Alignment explanation
Indices: 35301929--35301981 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
35301919 CCAATCCGAT
* *
35301929 CTTAGACTGGGAATGAATTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
35301955 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35301981 C
1 C
35301982 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35302078 original size:354 final size:344
Alignment explanation
Indices: 35301407--35302372 Score: 984
Period size: 354 Copynumber: 2.7 Consensus size: 344
35301397 GATCCCGCTG
* ** * * *
35301407 CCACAACCTTCGGTCCGGTTGGGGCTTAGACATAGAATGAACTCCCTATGCCTAAGCCAATCCAC
1 CCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAC
* * * *
35301472 GAAACGGACATGCGGGCGCTCAGCCGGTCGGAGAGGCAGGATGCGTAAGCCGGGGATCGACCCGA
66 GAAA--G-CGTGCGGGCGCTCAGCC-GTCGAAGAGGCAGAATGCGTAAGCCGGGGATCGA-CCGG
* * * *
35301537 TCCCCCCTGTGTGCTGTCAATCCTGCTGCCACAGA-CCTCGGTCTGGTCAGATCTTAGACTTGGA
126 TCCCCCC---GTGCTGTCAA---TGCTGCCGCA-ACCCTCGGTCCGATCAGATCTTAGACTGGGA
* * *
35301601 ATGAACTTT-GTATGCTT--ACTCCGGGATTAACTCCGTATGCCTAAGTCAACCCATGAAATGAG
184 ATGAA-TTTCGTATGCTTAGACT-GGGGATAAACTCCGTATGCCTAAGTCAACCCATGAAACGAG
* * * * *
35301663 CGTGCAGGCGCTCAGCCGGCCAGAGAGGCATAATGCGTAAGCCAGGGATCAGCCTGATCCCCTTC
247 CGTACAGGCACTCAGCCGGCCAGAGAGGCATAATACGCAAGCCAGGGATCAGCCTGATCCCCCTC
** *
35301728 TGTGTGCTGTCGATCCCACTAG-CGGTCCTACTA
312 TACGTGCTGCCGATCCCACT-GTCGGTCCTACTA
* *
35301761 CCACAACCCTCGATCCGACTGGGGCGTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAC
1 CCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAC
*
35301826 GAAAGCGTGCGGGCGCTCAGCCAGTCGAAGATGCAGAATGCGTAAGCCGGGGATCGACCTGGT-C
66 GAAAGCGTGCGGGCGCTCAGCC-GTCGAAGAGGCAGAATGCGTAAGCCGGGGATCGACC-GGTCC
* * *
35301890 CCCC-T-CTG-C-ATGCTGCCGTAACCCTCGGTCCAATCCGATCTTAGACTGGGAATGAATTTCG
129 CCCCGTGCTGTCAATGCTGCCGCAACCCTCGGTCCGATCAGATCTTAGACTGGGAATGAATTTCG
*
35301951 TATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACAGGCACT
194 TATGCTTAGACTGGGGATAAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACAGGCACT
* *
35302016 CAGCCGACCAGAAAGGCCAATCGGAGAGGCATAATATGCAAGCC-GAGGATTAG-CTCGATCCCC
259 CA---G-CC-----GGCC-A---GAGAGGCATAATACGCAAGCCAG-GGATCAGCCT-GATCCCC
*
35302079 CTCTACGTGCTGCCGATCCCACTGTCGGTCCTGCTA
309 CTCTACGTGCTGCCGATCCCACTGTCGGTCCTACTA
* * *
35302115 CCACAACCCTCGGTCCGACTGGGTCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCAT
1 CCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAC
* * * * * * * *
35302180 GAAACAAGCGTGTGGGCACTTAGCCGGCTAGAGAGGCCGAATGCGCAAGCCAGGGATCGATCCGG
66 G--A-AAGCGTGCGGGCGCTCAGCCGTCGA-AGAGGCAGAATGCGTAAGCCGGGGATCGA-CCGG
* * * *
35302245 TCCCCCCTGCGTGCTGTCGATCCTGCTATCGCAACCCTCTGTCCGATCTGATCTTAGACTGGGAA
126 T-CCCCC--CGTGCTGTCAATGCTGC---CGCAACCCTCGGTCCGATCAGATCTTAGACTGGGAA
* * *
35302310 TGAACTTCATATGCTTAGACTGGGGATAAACTCTGTATGCCTAAGTCAACCCATGAAACGAGC
185 TGAATTTCGTATGCTTAGACTGGGGATAAACTCCGTATGCCTAAGTCAACCCATGAAACGAGC
35302373 ATGCGGGCGC
Statistics
Matches: 517, Mismatches: 58, Indels: 60
0.81 0.09 0.09
Matches are distributed among these distances:
339 4 0.01
340 45 0.09
341 50 0.10
342 3 0.01
343 1 0.00
344 2 0.00
345 5 0.01
346 1 0.00
350 11 0.02
351 50 0.10
352 1 0.00
353 4 0.01
354 182 0.35
356 4 0.01
357 45 0.09
358 2 0.00
359 4 0.01
361 1 0.00
362 1 0.00
363 3 0.01
364 1 0.00
365 6 0.01
368 91 0.18
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.21
Consensus pattern (344 bp):
CCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAC
GAAAGCGTGCGGGCGCTCAGCCGTCGAAGAGGCAGAATGCGTAAGCCGGGGATCGACCGGTCCCC
CCGTGCTGTCAATGCTGCCGCAACCCTCGGTCCGATCAGATCTTAGACTGGGAATGAATTTCGTA
TGCTTAGACTGGGGATAAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACAGGCACTCA
GCCGGCCAGAGAGGCATAATACGCAAGCCAGGGATCAGCCTGATCCCCCTCTACGTGCTGCCGAT
CCCACTGTCGGTCCTACTA
Found at i:35303557 original size:26 final size:26
Alignment explanation
Indices: 35303521--35303573 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
35303511 CCAGTCTGAT
35303521 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35303547 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35303573 C
1 C
35303574 CTCAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35303738 original size:185 final size:182
Alignment explanation
Indices: 35303362--35303908 Score: 693
Period size: 185 Copynumber: 3.0 Consensus size: 182
35303352 TTCGATTGGG
* * * *
35303362 GCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * * * * * *
35303427 CCGGCCGGAAAGGCAGAATGCGCAAGCCGGGGATCGACCGGATTCCACCTGCATGCTGCCAATCC
66 CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCGG-TCCCCCCTGCATGCTGTCGATCC
* *
35303492 TACTGCCGCAACCCTCGATCCAGTCTGATCTTAGACTGGGAATGAACTCCGTAT
130 TACTGCCGCAACCCTCG-TCCAGTCCGATCTTAGACTGGGAATGAACTCCATAT
* * * * *
35303546 GCTTAGAC-TGGGAATGAACTCCGTATGCCTCAGTCAACCCATGAAATGAGCGTGCGGGCGCTCA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCA
* * *
35303610 GCCGACCGGAGAGGCAGAATGAGCAAGTCGGGGATCGGCCAGGTCCCCCCCAGCATGCTGTCGAT
65 GCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCC-GGT-CCCCCCTGCATGCTGTCGAT
* ** *
35303675 CCTGCTGCCATAACCCTCAGTCCAGTCCGATCTTAGATTGGGAATGAACTCCATAT
128 CCTACTGCCGCAACCCTC-GTCCAGTCCGATCTTAGACTGGGAATGAACTCCATAT
* *
35303731 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGACCGTACGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * * *
35303796 CC-AGCCGGGGAGGTAGAATGCGCAAGCCGAGGATCGGCCTGGTCCCCCCTGCGTGCTGTCGATC
66 CCGA-CCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCC-GGTCCCCCCTGCATGCTGTCGATC
* **
35303860 CTACTGCCGCAACCCTCGGTCCAATCCGATCTTAGACTACGAATGAACT
129 CTACTGCCGCAACCCTC-GTCCAGTCCGATCTTAGACTGGGAATGAACT
35303909 TCGTATGCCT
Statistics
Matches: 309, Mismatches: 48, Indels: 12
0.84 0.13 0.03
Matches are distributed among these distances:
183 1 0.00
184 150 0.49
185 156 0.50
186 2 0.01
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.18
Consensus pattern (182 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCGGTCCCCCCTGCATGCTGTCGATCCT
ACTGCCGCAACCCTCGTCCAGTCCGATCTTAGACTGGGAATGAACTCCATAT
Found at i:35304094 original size:159 final size:156
Alignment explanation
Indices: 35303731--35304177 Score: 405
Period size: 159 Copynumber: 2.8 Consensus size: 156
35303721 AACTCCATAT
* * * * *
35303731 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGACCGTACGGGCACTCAG
1 GCTTAGACCTGGAATGAACTCC-TATGCCTAAGCCAACCCAAGAAACGAGCGTGCGGGCGCTCAG
* * * *
35303796 CC-AGCCGGGGAGGTAGAATGCGCAAGCCGAGGATCGGCCTGGTCCCCCCTGCGTGCTGTCGATC
65 CCGA-CCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCC-GGTCCCCCCTGCGTGCTGTCGATC
* *
35303860 CTACTGCCGCAACCCTCGGTCCAATCCGA
128 CCACTGCCACAACCCTCGGTCCAATCCGA
* * * * *** * * * *
35303889 TCTTAGA-CTACGAATGAACTTCGTATGCCTAAGTCAATTGATGAAACAAGCGTGCGGGCGTTGA
1 GCTTAGACCT-GGAATGAAC-TCCTATGCCTAAGCCAACCCAAGAAACGAGCGTGCGGGCGCTCA
* * * *
35303953 GCCGATCGGAGAGGCATAATGCGCAAGCTGGGGATCGGTCCGGTCCCCCTCTGTGTGCTGTCGGT
64 GCCGACCGGAGAGGCAGAATGCGCAAGCTGGGGATCGG-CCGGTCCCCC-CTGCGTGCTGTCGAT
*** * *
35304018 CCCACTGCCACAACCCTCGGT-CTGGCTGGG
127 CCCACTGCCACAACCCTCGGTCCAATC-CGA
* * * *
35304048 GCTTAGACCTGGAATGAACTACCTATGGCTAAGCCAACCCAAGAAACGGGCTTGCGGGTGCTCAG
1 GCTTAGACCTGGAATGAACT-CCTATGCCTAAGCCAACCCAAGAAACGAGCGTGCGGGCGCTCAG
* * * * * * *
35304113 CTGGCTGGTGAGGCAGAATGCGCAAGTTGGGGATCGACCCGGTCCCCCCTGCGTGCTGTTGATCC
65 CCGACCGGAGAGGCAGAATGCGCAAGCTGGGGATCG-GCCGGTCCCCCCTGCGTGCTGTCGATCC
35304178 TGCTACTGTA
Statistics
Matches: 224, Mismatches: 56, Indels: 18
0.75 0.19 0.06
Matches are distributed among these distances:
157 1 0.00
158 99 0.44
159 122 0.54
160 2 0.01
ACGTcount: A:0.21, C:0.30, G:0.30, T:0.19
Consensus pattern (156 bp):
GCTTAGACCTGGAATGAACTCCTATGCCTAAGCCAACCCAAGAAACGAGCGTGCGGGCGCTCAGC
CGACCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCGGTCCCCCCTGCGTGCTGTCGATCCCA
CTGCCACAACCCTCGGTCCAATCCGA
Found at i:35304248 original size:26 final size:26
Alignment explanation
Indices: 35304208--35304262 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
35304198 CAGACCGATT
35304208 TTAGACTGGGAATGAACTCCATATGC
1 TTAGACTGGGAATGAACTCCATATGC
* **
35304234 TTAGACTGGGGATGAACTCTGTATGC
1 TTAGACTGGGAATGAACTCCATATGC
35304260 TTA
1 TTA
35304263 AGTCAACCCA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGC
Found at i:35304525 original size:26 final size:26
Alignment explanation
Indices: 35304496--35304548 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
35304486 CCGGTCTGAT
*
35304496 CTTAGAC-TAAGAGTGAACTCCGTATG
1 CTTAGACAT-AGAATGAACTCCGTATG
*
35304522 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATAGAATGAACTCCGTATG
35304548 C
1 C
35304549 CTAAACCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATAGAATGAACTCCGTATG
Found at i:35305041 original size:26 final size:25
Alignment explanation
Indices: 35305005--35305056 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
35304995 CTGGTCTGAT
35305005 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCC-TATG
*
35305031 CTTAGACTGGGGATGAACTCCTATG
1 CTTAGACTGGGAATGAACTCCTATG
35305056 C
1 C
35305057 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 5 0.20
26 20 0.80
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (25 bp):
CTTAGACTGGGAATGAACTCCTATG
Found at i:35305693 original size:26 final size:26
Alignment explanation
Indices: 35305664--35305714 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
35305654 CCAGTCCGAT
*
35305664 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
* *
35305690 CTTACACTGGGGATGAACTCTGTAT
1 CTTACACTGGGAATGAACTCCGTAT
35305715 CCCTAAGTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:35306064 original size:26 final size:26
Alignment explanation
Indices: 35306028--35306080 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
35306018 CTGGTCAGAT
35306028 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
* *
35306054 CTTAGACTGGGGATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
35306080 C
1 C
35306081 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:35312321 original size:26 final size:26
Alignment explanation
Indices: 35312270--35312322 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
35312260 GCCTCAAAAT
*
35312270 CTTAGACTGAGAATGAACTGCATATG
1 CTTAGACTGAGAATGAACTCCATATG
*
35312296 CTTAGACATG-GAATGAACTCCGTATG
1 CTTAGAC-TGAGAATGAACTCCATATG
35312322 C
1 C
35312323 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCATATG
Found at i:35312829 original size:158 final size:157
Alignment explanation
Indices: 35312296--35313117 Score: 593
Period size: 159 Copynumber: 5.1 Consensus size: 157
35312286 ACTGCATATG
* * *
35312296 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGTGCTCAG
1 CTTAGAC-TGGGAATGAAC-CCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCGCAG
* * * * * * * * * *
35312360 CCGACCAGAGAGGTAGAATGCGCAAGCCGAAGGA-TCGACTCGGTTCCCCTTGCATGCTGTCAAT
64 CCGGCCGGAGAGGCAGAATGCGCAAGCCG-GGGATTAGCCT-GGTCCCCCCTGCGTGCTGTCGAT
* ** *
35312424 CCTACTGCCACAACCCTCGGTCTGGTCTGAT
127 CCTGCTGCTGCAACCCTCGGTCCGGTCTGAT
* * * * *
35312455 CTTACACTGGGAATGAACTCTGTATGCATAAGTCAACCCACGAAATGAGCGTGCGGGCGCTG-AG
1 CTTAGACTGGGAATGAAC-CCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGC-GCAG
* ** * * * * ** * * *
35312519 CTGGCCAAAAAGGCATAATGCGTAAGCCGGGGATCAGCCTACTCCGTCTCTGCGTGCTG-CTGGT
64 CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATTAGCCTGGTCC-CCCCTGCGTGCTGTC-GAT
** * *
35312583 CCTGCTGCCACAACCCTCAGTCTGG-CT-AT
127 CCTGCTGCTGCAACCCTCGGTCCGGTCTGAT
* * * *
35312612 GGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTACGGGCGCGC
1 --CTTAGAC-TGGGAATGAAC-CCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCGC
* * * * *
35312676 AGCCGACCGGAGAGGTAGAATGCGCAAGCCGGGGATTGGCCTGGTCCCCCCTGCATGCTGCCGAT
62 AGCCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATTAGCCTGGTCCCCCCTGCGTGCTGTCGAT
* *
35312741 CCTGCTGCTGCAACCTTCGGTCCAGTCTGAT
127 CCTGCTGCTGCAACCCTCGGTCCGGTCTGAT
* * * * * *
35312772 CTTAGACTGGGAATGAACCCTGTATGCCTAAGTCAACCCATGAAACGAACGTGCGGGCACTCAAC
1 CTTAGACTGGGAATGAACCC-GTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCGCAGC
* * * ** *
35312837 CGGTCGGAGAGGCATAATGCGCAAGTCGGGGATTAGCCCAGTCCCCCTCTGCGTGTTGTCGATCT
65 CGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATTAGCCTGGTCCCCC-CTGCGTGCTGTCGA--T
* * **
35312902 CGCTGTCAGTCCTACTGCCATAACCCTCGGTCTGG-CTGGGG
127 C-C--T--G--CTGCTG-C--AACCCTCGGTCCGGTCT-GAT
* * * * *
35312943 CTTAGA-TATGGAATGAATTCCGTATGCCTAAGCTAACCCATGAAACAAGCGTGCGGGCGCTG-A
1 CTTAGACT-GGGAATGAA-CCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGC-GCA
* * * * * * * *
35313006 GCCGGCCGAAGAGGCAGAATGCGCAAGTCAGGGATCAGCCTGATCCCCCCTACGTGCTATAGATC
63 GCCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATTAGCCTGGTCCCCCCTGCGTGCTGTCGATC
*
35313071 CTGCTGCTGCAACCCTCGGTCTGGTCTGAT
128 CTGCTGCTGCAACCCTCGGTCCGGTCTGAT
35313101 CTTAGACTGGGAATGAA
1 CTTAGACTGGGAATGAA
35313118 TTCCATATGC
Statistics
Matches: 517, Mismatches: 113, Indels: 67
0.74 0.16 0.10
Matches are distributed among these distances:
157 5 0.01
158 159 0.31
159 212 0.41
160 4 0.01
161 7 0.01
162 1 0.00
163 1 0.00
164 1 0.00
165 1 0.00
166 1 0.00
167 1 0.00
168 7 0.01
169 1 0.00
170 13 0.03
171 101 0.20
172 2 0.00
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.20
Consensus pattern (157 bp):
CTTAGACTGGGAATGAACCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCGCAGCC
GGCCGGAGAGGCAGAATGCGCAAGCCGGGGATTAGCCTGGTCCCCCCTGCGTGCTGTCGATCCTG
CTGCTGCAACCCTCGGTCCGGTCTGAT
Found at i:35313076 original size:329 final size:316
Alignment explanation
Indices: 35312295--35313117 Score: 914
Period size: 329 Copynumber: 2.6 Consensus size: 316
35312285 AACTGCATAT
* * *
35312295 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTGAG
* * * *
35312360 CCGACC-AGAGAGGTAGAATGCGCAAGCCGAAGGATCGACTCGGTTCCCCTTGCATGCTGTCA-A
66 CCGACCGA-AGAGGTAGAATGCGCAAGCC-AGGGATCGCCT-GGTCCCCCCTGCATGCTGT-AGA
* ** * *
35312423 TCCTACTGCCACAACCCTCGGTCTGGTCTGATCTTACACTGGGAATGAACTCTGTATGCATAAGT
127 TCCTGCTGCTGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACCCTGTATGCATAAGT
* * * * * * *
35312488 CAACCCACGAAATGAGCGTGCGGGCGCTGAGCTGGCCAAAAAGGCATAATGCGTAAGCCGGGGAT
192 CAACCCACGAAACGAACGTGCGGGCACTCAACCGGCCAAAAAGGCATAATGCGCAAGCCGGGGAT
* * * * *
35312553 CAGCCTACTCCGTCTCTGCGTGCTGCTGGTCCTGCTGCCACAACCCTCAGTCTGGCTATG
257 CAGCCCACCCCCTCTCTGCGTGCTGCTGGTCCTACTGCCACAACCCTCAGTCTGGCTAGG
* * * *
35312613 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTACGGGCGC-GCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTG-A
* * * **
35312677 GCCGACCGGAGAGGTAGAATGCGCAAGCCGGGGATTGGCCTGGTCCCCCCTGCATGCTGCCGATC
65 GCCGACCGAAGAGGTAGAATGCGCAAGCCAGGGA-TCGCCTGGTCCCCCCTGCATGCTGTAGATC
* ** *
35312742 CTGCTGCTGCAACCTTCGGTCCAGTCTGATCTTAGACTGGGAATGAACCCTGTATGCCTAAGTCA
129 CTGCTGCTGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACCCTGTATGCATAAGTCA
* * ** * * *
35312807 ACCCATGAAACGAACGTGCGGGCACTCAACCGGTCGGAGAGGCATAATGCGCAAGTCGGGGATTA
194 ACCCACGAAACGAACGTGCGGGCACTCAACCGGCCAAAAAGGCATAATGCGCAAGCCGGGGATCA
* * *
35312872 GCCCAGTCCCCCTCTGCGTGTTGTCGATCTCGCTGTCAGTCCTACTGCCATAACCCTCGGTCTGG
259 GCCCA--CCCCCTCT-C-TG-CGT-G--CT-GCTG---GTCCTACTGCCACAACCCTCAGTCTGG
*
35312937 CTGGG
312 CTAGG
* * * * *
35312942 GCTTAGATATGGAATGAATTCCGTATGCCTAAGCTAACCCATGAAACAAGCGTGCGGGCGCTGAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTGAG
* * * * * * *
35313007 CCGGCCGAAGAGGCAGAATGCGCAAGTCAGGGATCAGCCTGATCCCCCCTACGTGCTATAGATCC
66 CCGACCGAAGAGGTAGAATGCGCAAGCCAGGGATC-GCCTGGTCCCCCCTGCATGCTGTAGATCC
35313072 TGCTGCTGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAA
130 TGCTGCTGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAA
35313118 TTCCATATGC
Statistics
Matches: 415, Mismatches: 72, Indels: 25
0.81 0.14 0.05
Matches are distributed among these distances:
317 133 0.32
318 87 0.21
319 6 0.01
320 1 0.00
321 2 0.00
322 2 0.00
323 1 0.00
325 2 0.00
326 4 0.01
328 1 0.00
329 175 0.42
330 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (316 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTGAG
CCGACCGAAGAGGTAGAATGCGCAAGCCAGGGATCGCCTGGTCCCCCCTGCATGCTGTAGATCCT
GCTGCTGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACCCTGTATGCATAAGTCAAC
CCACGAAACGAACGTGCGGGCACTCAACCGGCCAAAAAGGCATAATGCGCAAGCCGGGGATCAGC
CCACCCCCTCTCTGCGTGCTGCTGGTCCTACTGCCACAACCCTCAGTCTGGCTAGG
Found at i:35313282 original size:26 final size:26
Alignment explanation
Indices: 35313253--35313305 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
35313243 CCAGTTCAAT
35313253 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
35313279 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
35313305 C
1 C
35313306 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:35313575 original size:170 final size:170
Alignment explanation
Indices: 35313278--35313595 Score: 381
Period size: 170 Copynumber: 1.9 Consensus size: 170
35313268 AACTCCATAT
* * *
35313278 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAG
* * * * * * * ** *
35313343 TCAGTCGGAGAGGCATAATGTGTAAGTCGAGGATCAGCTCGATCCCCTCTGTGTGTTGTCGATCC
66 TCAGCCGAAGAGGCAGAATGCGCAAGTCGAGGATCACCTCGATCCCCCCTACGTGCTGTCGATCC
*
35313408 CGCTGCCGGTCCTGCTGCCACAACCCTCGGTCCGACTAGG
131 CGCTACCGGTCCTGCTGCCACAACCCTCGGTCCGACTAGG
* *
35313448 GCTTAGACAT-GGAATGAACTCCGTATGCCTAA-TCCAACCCATGAAATGAGCATGCGGGCGCTC
1 GCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGT-CAACCCACGAAACGAGCATGCGGGCGCTC
* * * *
35313511 AGTCGGCCGAAGAGGCAGAATGCGCAAGTTGGGGATCGACCT-GGTCCCCCCTACGTGCTGTCGA
64 AGTCAGCCGAAGAGGCAGAATGCGCAAGTCGAGGATC-ACCTCGATCCCCCCTACGTGCTGTCGA
* * *
35313575 TCCTGCTACTGGTGCTGCTGC
128 TCCCGCTACCGGTCCTGCTGC
35313596 TGCAACCTCC
Statistics
Matches: 122, Mismatches: 23, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
169 1 0.01
170 117 0.96
171 4 0.03
ACGTcount: A:0.21, C:0.29, G:0.29, T:0.21
Consensus pattern (170 bp):
GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAG
TCAGCCGAAGAGGCAGAATGCGCAAGTCGAGGATCACCTCGATCCCCCCTACGTGCTGTCGATCC
CGCTACCGGTCCTGCTGCCACAACCCTCGGTCCGACTAGG
Found at i:35313657 original size:26 final size:26
Alignment explanation
Indices: 35313620--35313671 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
35313610 TGGTCTGATT
*
35313620 TTAGACTGGGAATGAACTTCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
35313646 TTAGACAT-GGAATGAACTCCGTATGC
1 TTAGAC-TGGGAATGAACTCCGTATGC
35313672 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:35314017 original size:159 final size:158
Alignment explanation
Indices: 35313644--35314145 Score: 537
Period size: 159 Copynumber: 3.2 Consensus size: 158
35313634 AACTTCGTAT
*
35313644 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTTCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * *
35313709 CC-AACCAGAGAGGCAGAACGCACAAGCTGGGGATCGGCCCGGTCCCCCTGCGTACTGTCGATCC
66 CCGAACCAGAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGGTCCCCCTACGTGCTGTCGATCC
* *
35313773 TGCAGTCGTAACCCTCGGTCCGATCCGA
131 TGCTGTCGCAACCCTCGGTCCGATCCGA
* * * ** ** *
35313801 TCTTTGAC-TGGGAATGAACTCCGTATGCATAAGTAAACCCATAAAACGAGCGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * *
35313865 GCCGATCGA-AGAGGCATAATGCGCAAGCCAGGGATCGGCTCGGTCCCTCTCTACGTGCTGTCGG
65 GCCGAACCAGAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGGTCCC-C-CTACGTGCTGTCGA
* * * * ** *
35313929 TCCCGCTGCCACAACCCTCGGTCCGGTTGGG
128 TCCTGCTGTCGCAACCCTCGGTCCGATCCGA
* * * * *
35313960 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACACACGAAACGGGCGAGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * **
35314025 TCG-GCCAGAGAGGCAGAATGCGCAAGTCGGGGATCGGCTCGGTCCCCCCTACGTGCTACCGATC
66 CCGAACCAGAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGGT-CCCCCTACGTGCTGTCGATC
*
35314089 CTGCTGTCGCAACCCTCGGTCCGATCCTA
130 CTGCTGTCGCAACCCTCGGTCCGATCCGA
* * *
35314118 TCTCAGAC-TGGGAATGAACTTCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
35314146 TTAGACTGGG
Statistics
Matches: 274, Mismatches: 63, Indels: 15
0.78 0.18 0.04
Matches are distributed among these distances:
156 1 0.00
157 89 0.32
158 62 0.23
159 118 0.43
160 4 0.01
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGAACCAGAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGGTCCCCCTACGTGCTGTCGATCC
TGCTGTCGCAACCCTCGGTCCGATCCGA
Found at i:35314090 original size:512 final size:507
Alignment explanation
Indices: 35312613--35314223 Score: 1543
Period size: 506 Copynumber: 3.2 Consensus size: 507
35312603 TCTGGCTATG
* * * * *
35312613 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTACGGGCGCGCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTTCGGGCGCTCAG
* * * * * * *
35312678 CCGACCGGAGAGGTAGAATGCGCAAGCCGGGGATTGGCCTGGTCCCCCCTGCATGCTGCCGATCC
66 CCAACCGGAGAGGCAGAATGCACAAGCTGGGGA-TGGCCCGGT-CCCCCTGC-TACTGTCGATCC
* * * * *
35312743 TGCTG-CTGCAACCTTCGGTCC-AGTCTGATCTTAGACTGGGAATGAAC-CCTGTATGCCTAAGT
128 TGCAGTC-GTAACCCTCGGTCCGACTCCGATCTTAGACTGGGAATGAACTCC-GTATGCCTAAGT
* * * *
35312805 CAACCCATGAAACGAACGTGCGGGCACTCAACCGGTCGGAGAGGCATAATGCGCAAGTCGGGGAT
191 CAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGATCGGAGAGGCATAATGCGCAAGTC-GGGAT
* * * * * * *
35312870 TAGCCCAGTCCCCCTCTGCGTGTTGTCGATCTCGCTGTCAGTCCTACTGCCATAACCCTCGGTCT
255 CAGCTCGGT-CCCCTCTGC----TGTCGA--TCGCTGTCGGTCCTGCTGCCACAACCCTCGGTCC
* * * * *
35312935 GGCTGGGGCTTAGATATGGAATGAATTCCGTATGCCTAAGCTAACCCATGAAACAAGCGTGCGGG
313 GGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGAGCGGG
* * * * *
35313000 CGCTGAGCCGGCCGAAGAGGCAGAATGCGCAAGTCAGGGATCAGCCTGATCCCCCCTACGTGCT-
378 CGCTCAGTCGGCCGAAGAGGCAGAATGCGCAAGTCGGGGATCGGCCTGGTCCCCCCTACGTGCTC
* *
35313064 -A--TA-GATCCTGCTGCTGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAA-TTCCAT
443 GATCTACG-TGCTGCTGCTGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTT-CGT
35313124 AT
506 AT
* * * * * *
35313126 GCTTAGACATAGACTGAACTCCGTATGCCTAAGCCAACCCATGAAAAGAGTGTTCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTTCGGGCGCTCAG
* * * ** * ** *
35313191 CCAGCCGGAGAGGCAGAATGCACAAG-T--TGAT---CCTGT-AGCC-GCAACCCTCGGTCCAGT
66 CCAACCGGAGAGGCAGAATGCACAAGCTGGGGATGGCCCGGTCCCCCTGCTACTGTCGATCC--T
* * * * *** * *
35313248 TCAATCTTAGA--CTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAG
129 GCAGTCGTA-ACCCTCGGTCCG-ACTCC-GAT-CTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * * *
35313311 TCAACCCACGAAACGAGCGTGCGGGTGCTCAGTC-AGTCGGAGAGGCATAATGTGTAAGTCGAGG
190 TCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGA-TCGGAGAGGCATAATGCGCAAGTCG-GG
* * *
35313375 ATCAGCTCGATCCCCTCTGTGTGTTGTCGATCCCGCTGCCGGTCCTGCTGCCACAACCCTCGGTC
253 ATCAGCTCGGTCCCCTC----TGCTGTCGAT--CGCTGTCGGTCCTGCTGCCACAACCCTCGGTC
* * * *
35313440 CGACTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAATCCAACCCATGAAATGAGC-ATGCG
312 CGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGA-GCG
* *
35313504 GGCGCTCAGTCGGCCGAAGAGGCAGAATGCGCAAGTTGGGGATCGACCTGGTCCCCCCTACGTGC
376 GGCGCTCAGTCGGCCGAAGAGGCAGAATGCGCAAGTCGGGGATCGGCCTGGTCCCCCCTACGTGC
* *
35313569 TGTCGATCCTGCTACTGGTGCTGCTGCTGCAA-CCTCCGATCTGGTCTGATTTTAGACTGGGAAT
441 --TCGA---T-CTAC--GTGCTGCTGCTGCAACCCT-CGGTCTGGTCTGATCTTAGACTGGGAAT
35313633 GAACTTCGTAT
497 GAACTTCGTAT
35313644 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTTCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTTCGGGCGCTCAG
* *
35313709 CCAACCAGAGAGGCAGAACGCACAAGCTGGGGATCGGCCCGGTCCCCCTGCGTACTGTCGATCCT
66 CCAACCGGAGAGGCAGAATGCACAAGCTGGGGAT-GGCCCGGTCCCCCTGC-TACTGTCGATCCT
* * *
35313774 GCAGTCGTAACCCTCGGTCCGA-TCCGATCTTTGACTGGGAATGAACTCCGTATGCATAAGTAAA
129 GCAGTCGTAACCCTCGGTCCGACTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * * *
35313838 CCCATAAAACGAGCGTGCGGGCGCTGAGCCGATCGAAGAGGCATAATGCGCAAGCCAGGGATCGG
194 CCCATGAAACGAGCGTGCGGGCGCTCAGCCGATCGGAGAGGCATAATGCGCAAGTC-GGGATCAG
* * *
35313903 CTCGGT-CCCTCT-CT-ACG-T-GCTGTCGGTCCCGCTGCCACAACCCTCGGTCCGGTTGGGGCT
258 CTCGGTCCCCTCTGCTGTCGATCGCTGTCGGTCCTGCTGCCACAACCCTCGGTCCGGCTGGGGCT
* * * * *
35313963 TAGACATGGAATGAACTCCCTATGCCTAAGCCAACACACGAAACGGGCGAGCGGGTGCTCAGTCG
323 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGAGCGGGCGCTCAGTCG
35314028 GCC-AGAGAGGCAGAATGCGCAAGTCGGGGATCGG-CTCGGTCCCCCCTACGTGCTACCGATC--
388 GCCGA-AGAGGCAGAATGCGCAAGTCGGGGATCGGCCT-GGTCCCCCCTACGTGCT--CGATCTA
* * *
35314089 C-TGCTG-T-C-GCAACCCTCGGTCCGATCCT-ATCTCAGACTGGGAATGAACTTCGTAT
449 CGTGCTGCTGCTGCAACCCTCGGTCTGGT-CTGATCTTAGACTGGGAATGAACTTCGTAT
* * * * * * *
35314144 GCTTAGAC-TGGGAATGAACTCTGTATGCTTAAGTCAACCCATGAAACGAGCGTGCGAGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTTCGGGCGCTCA
*
35314208 GCCAGCCGGAGAGGCA
65 GCCAACCGGAGAGGCA
35314224 TAATACTCAA
Statistics
Matches: 895, Mismatches: 148, Indels: 123
0.77 0.13 0.11
Matches are distributed among these distances:
499 1 0.00
500 104 0.12
501 6 0.01
502 7 0.01
503 10 0.01
504 6 0.01
505 5 0.01
506 158 0.18
507 87 0.10
508 4 0.00
509 2 0.00
510 6 0.01
511 3 0.00
512 142 0.16
513 79 0.09
515 1 0.00
516 4 0.00
517 4 0.00
518 129 0.14
519 4 0.00
521 3 0.00
522 5 0.01
523 88 0.10
524 4 0.00
525 8 0.01
526 10 0.01
527 7 0.01
528 8 0.01
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (507 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTTCGGGCGCTCAG
CCAACCGGAGAGGCAGAATGCACAAGCTGGGGATGGCCCGGTCCCCCTGCTACTGTCGATCCTGC
AGTCGTAACCCTCGGTCCGACTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
CATGAAACGAGCGTGCGGGCGCTCAGCCGATCGGAGAGGCATAATGCGCAAGTCGGGATCAGCTC
GGTCCCCTCTGCTGTCGATCGCTGTCGGTCCTGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAG
ACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGAGCGGGCGCTCAGTCGGCC
GAAGAGGCAGAATGCGCAAGTCGGGGATCGGCCTGGTCCCCCCTACGTGCTCGATCTACGTGCTG
CTGCTGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTTCGTAT
Found at i:35314158 original size:26 final size:26
Alignment explanation
Indices: 35314122--35314174 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
35314112 ATCCTATCTC
35314122 AGACTGGGAATGAACT-TCGTATGCTT
1 AGACTGGGAATGAACTCT-GTATGCTT
35314148 AGACTGGGAATGAACTCTGTATGCTT
1 AGACTGGGAATGAACTCTGTATGCTT
35314174 A
1 A
35314175 AGTCAACCCA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.30
Consensus pattern (26 bp):
AGACTGGGAATGAACTCTGTATGCTT
Found at i:35314226 original size:343 final size:341
Alignment explanation
Indices: 35313806--35314576 Score: 944
Period size: 343 Copynumber: 2.3 Consensus size: 341
35313796 TCCGATCTTT
* * *
35313806 GACTGGGAATGAACTCCGTATGCATAAGTAAACCCATAAAACGAGCGTGCGGGCGCTGAGCC-GA
1 GACTGGGAATGAACTCTGTATGCATAAGTCAACCCATGAAACGAGCGTGCGGGCGCTGAGCCAG-
* * * * * *
35313870 TCGAAGAGGCATAATGCGCAAGCCAGGGATCGGCTCGGTCCCTC-TCTACGTGCTGTCGGTCCCG
65 CCGAAGAGGCATAATGCGCAAGCCAAGGATCGACCCGATCCC-CATCTACGTGCTGTCGATCCCG
* *** *
35313934 CTGCCACAACCCTCGGTCCGGTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACA
129 CTACCACAACCCTAAATCCGATTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACA
* * * * * *
35313999 CACGAAACGGGCG-AGCGGGTGCTCAGTCGGCCAGAGAGGCAGAATGCGCAAG-TCGGGGATCGG
194 CACGAAACGGGCGTA-CGGGCGCTCAGCCGACCAGAGAGGAAGAATGAGCAAGCT-AGGGATCGG
* *
35314062 -CTCGGTCCCCCCTACGTGCTACCGATCCTGCTGTCGCAACCCTCGGTCCGATCCT-ATCTCAGA
257 TC-CGGTCCCCCCTACGTGCTACCGATCCTACT-ACGCAACCCTCGGTCCGAT-CTGATCTCAGA
*
35314125 CTGGGAATGAACT-TCGTATGCTTA
319 CT-GGAATGAACTCT-ATATGCTTA
* *
35314149 GACTGGGAATGAACTCTGTATGCTTAAGTCAACCCATGAAACGAGCGTGCGAGCGCTGAGCCAGC
1 GACTGGGAATGAACTCTGTATGCATAAGTCAACCCATGAAACGAGCGTGCGGGCGCTGAGCCAGC
* * * * * **
35314214 CGGAGAGGCATAATACTCAAGTCAAGGATCGACCCGATCCCCATTTTTGTGCTGTCGATCCCGCT
66 CGAAGAGGCATAATGCGCAAGCCAAGGATCGACCCGATCCCCATCTACGTGCTGTCGATCCCGCT
* * *
35314279 ACCATAACCCTAAATCCGATTGGGGCTTAGACATGGAATGATCTCCCTATGCCTAAGCCAACCCA
131 ACCACAACCCTAAATCCGATTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACACA
* * * *
35314344 TGAAATGGGCGTACGGGCGCTCAGCCGATCGGAGAGGAAGAATGAGCAAGCTAGGGATCGGTCCG
196 CGAAACGGGCGTACGGGCGCTCAGCCGACCAGAGAGGAAGAATGAGCAAGCTAGGGATCGGTCCG
* ** * *
35314409 GTCCCCCCTGCGTGCTGTCGATCTTACTACGCAACCCTCGGTCCGATCTGATCTTAGACTGGAAT
261 GTCCCCCCTACGTGCTACCGATCCTACTACGCAACCCTCGGTCCGATCTGATCTCAGACTGGAAT
35314474 GAACTCTATATGCTTA
326 GAACTCTATATGCTTA
* * * * *
35314490 GACTGGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAAC
1 GACTGGGAATGAACTCTGTATGCATAAGTCAACCCATGAAACGAGCGTGCGGGCGCTGAGCCAGC
* **
35314555 CAAAGAGGCAGGATGCGCAAGC
66 CGAAGAGGCATAATGCGCAAGC
35314577 TGGGGATCAA
Statistics
Matches: 364, Mismatches: 57, Indels: 16
0.83 0.13 0.04
Matches are distributed among these distances:
341 94 0.26
342 29 0.08
343 237 0.65
344 4 0.01
ACGTcount: A:0.24, C:0.28, G:0.28, T:0.20
Consensus pattern (341 bp):
GACTGGGAATGAACTCTGTATGCATAAGTCAACCCATGAAACGAGCGTGCGGGCGCTGAGCCAGC
CGAAGAGGCATAATGCGCAAGCCAAGGATCGACCCGATCCCCATCTACGTGCTGTCGATCCCGCT
ACCACAACCCTAAATCCGATTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACACA
CGAAACGGGCGTACGGGCGCTCAGCCGACCAGAGAGGAAGAATGAGCAAGCTAGGGATCGGTCCG
GTCCCCCCTACGTGCTACCGATCCTACTACGCAACCCTCGGTCCGATCTGATCTCAGACTGGAAT
GAACTCTATATGCTTA
Found at i:35314495 original size:25 final size:26
Alignment explanation
Indices: 35314461--35314512 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
35314451 CCGATCTGAT
35314461 CTTAGACT-GGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCTATATG
* *
35314486 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTATATG
35314512 C
1 C
35314513 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 8 0.33
26 16 0.67
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTATATG
Found at i:35315688 original size:157 final size:156
Alignment explanation
Indices: 35315243--35315988 Score: 678
Period size: 157 Copynumber: 4.7 Consensus size: 156
35315233 TTAACTAGCT
* *
35315243 GGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTTGCGTGCTATCGATCCTGCTG
1 GGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGAT-CCCCC-TACGTGCTGTCGATCCTGCTG
* * * * *
35315308 CCGTAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACT-CGTATGCGTTAGTCAACCCAC
64 CCGAAACCCTCGGTCCGGTCGGATCTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCCAC
* * * * * **
35315372 AAAATGGGTGTGCAGGTGCTGGGCCGATC
128 GAAACGGGCGTGCGGGCGCTCAGCCGATC
* ** * * * * **
35315401 GGAGAGTCTTAATGCGCAAGCTGGGGATCGGCCTGGACCCCCTCTACGTGCTGTCGGTCCCACTG
1 GGAGAGGCAGAATGCGCAAGCCGGGGATCGGCC-CGATCCCC-CTACGTGCTGTCGATCCTGCTG
* * ** *
35315466 CC-ACAACCCTCAGTTCGG-CTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCC
64 CCGA-AACCCTCGGTCCGGTC-GGATCTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCC
* * * *
35315529 ATGAAACGGGTGTGCGGGTGCTCAACCGATC
126 ACGAAACGGGCGTGCGGGCGCTCAGCCGATC
* * * *
35315560 GGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGATCCCCCTGCGTGCTGTCGATCTTGCTACC
1 GGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTACGTGCTGTCGATCCTGCTGCC
* * * *
35315625 GAAACCCTTGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGA
66 GAAACCCTCGGTCCGGTCGGATCTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGA
* * * *
35315690 AATGAGCGTGCGGGCGCTGAGCCGACC
130 AACGGGCGTGCGGGCGCTCAGCCGATC
* * * * * *
35315717 AGAGAGGCATAATGCCCAAGCCGAGGATCGGCCCGATCCCCCT-CTAGTGCTGCCG-TCCTGCTA
1 GGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTAC--GTGCTGTCGATCCTGCTG
** ** *
35315780 CC-ACAACCCTCGGTCC-CACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCC
64 CCGA-AACCCTCGGTCCGGTC-GGATCTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCC
*
35315843 ACGAAACGGGCGTACGGGCGCTCAGCCGATC
126 ACGAAACGGGCGTGCGGGCGCTCAGCCGATC
* * * * * * * ** *
35315874 GGAGAGGTAGAAAGCGTAAGCTGGGGATCGGCTCGGTCCCCCCTATGTGCTACCGATCCTGCTGT
1 GGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGAT-CCCCCTACGTGCTGTCGATCCTGCTGC
* * *
35315939 CGCAACCCTCTGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGC
65 CGAAACCCTCGGTCCGGTCGGATCTTAGACT-GGAATGAACTCCGTATGC
35315989 TTAGACTGGG
Statistics
Matches: 471, Mismatches: 97, Indels: 40
0.77 0.16 0.07
Matches are distributed among these distances:
156 4 0.01
157 247 0.52
158 148 0.31
159 72 0.15
ACGTcount: A:0.21, C:0.31, G:0.29, T:0.20
Consensus pattern (156 bp):
GGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTACGTGCTGTCGATCCTGCTGCC
GAAACCCTCGGTCCGGTCGGATCTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAA
ACGGGCGTGCGGGCGCTCAGCCGATC
Found at i:35315991 original size:26 final size:26
Alignment explanation
Indices: 35315962--35316014 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
35315952 CCGGTCTGAT
35315962 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
35315988 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
35316014 C
1 C
35316015 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:35316479 original size:355 final size:343
Alignment explanation
Indices: 35315647--35316505 Score: 913
Period size: 355 Copynumber: 2.4 Consensus size: 343
35315637 CCGGTCCGAT
*
35315647 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTCAGC
* * * * *
35315712 CGACCAGAGAGGCATAATGCCCAAGCCGAGGATCGGCCCGATCCCCCTCTA-GTGCTGCCG-TCC
66 CGACCGGAGAGGCATAATGCGCAAGCCGAGGATCAGCCCGATCGCCCTCTACGTGCTGTCGATCC
35315775 TGCTACCACAACCCTCGGTCCCACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
131 TGCTACCACAACCCTCGGTCCCACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
* * * *
35315840 CCCACGAAACGGGCGTACGGGCGCTCAGCCGATCGGAGAGGTAGAAAGCGTAAGCTGGGGATCGG
196 CCCACGAAACGAGCGTACGGGCGCTCAACCGACCGGAGAGGCAGAAAGCGTAAGCTGGGGATCGG
* * * * **
35315905 CTCGGTCCCCCCTATGTGCTACCGATCCTGCTGTCGCAACCCTCTGTCCGGTCTGATCTTAGACT
261 CTCGGTCCCCCCCATGTGCTACCGATCCTGCTGTCGCAACCATCGGTCCGATCCAATCTTAGACT
*
35315970 AGGAATGAACTCCGTATG
326 AGGAATGAACTCCATATG
* * * * *
35315988 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGTGTTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTCAGC
* * ** * * *
35316053 CGACCGAAGAGGCATATTATGCAAGCCGGGGATCAGCCCGATCCCCCTTCGCGTGCTGCTGATCC
66 CGACCGGAGAGGCATAATGCGCAAGCCGAGGATCAGCCCGA-------TCGC--CCT-CT-A-CG
* * ** **
35316118 TGCTGTCGATCTTGCTGCCACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATGAACTCTGTA
119 TGCTGTCGATCCTGCTACCACAACCCTCGGTCCCACTGGGGCTTAGACATGGAATGAACTCCCTA
* * * *
35316183 TGCCTAAGCCAACCCATGAAATGAGCTTACGGGCGCTCAACCGGCCGGAGAGGCA-AAATGCGTA
184 TGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAACCGACCGGAGAGGCAGAAA-GCGTA
* * *
35316247 AGCTGGGGATCGGCTTGG-CCCCCCCATGCGTGCTGTCGATCCTACTGCTGGTCCTGCTACCGCA
248 AGCTGGGGATCGGCTCGGTCCCCCCCAT--GTGC--T--A-CCGA-TCCT-G--CTG-T--CGCA
*
35316311 ACCATCGGTCCGATCCAATCTTAGACTGGGAATGAAC-CCTATATG
299 ACCATCGGTCCGATCCAATCTTAGACTAGGAATGAACTCC-ATATG
* * ** * *
35316356 CTTAGACAT-GGAATGAACTACGTGTGCCTAAACCAACCCACGAAATGAGCATGCGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTCAG
* * * *
35316420 TCGACCGGAGAGGCAGAATGCGCAAGTCGAGGATCAACCCGAT-GCCCTCTACGTGCTGTCGATC
65 CCGACCGGAGAGGCATAATGCGCAAGCCGAGGATCAGCCCGATCGCCCTCTACGTGCTGTCGATC
* *
35316484 CTGCTACCGCAACCTTCGGTCC
130 CTGCTACCACAACCCTCGGTCC
35316506 AGTCCGATCG
Statistics
Matches: 417, Mismatches: 70, Indels: 48
0.78 0.13 0.09
Matches are distributed among these distances:
341 92 0.22
348 3 0.01
350 2 0.00
351 2 0.00
352 1 0.00
354 18 0.04
355 148 0.35
356 5 0.01
357 2 0.00
358 3 0.01
360 3 0.01
361 4 0.01
362 3 0.01
363 1 0.00
365 3 0.01
366 1 0.00
367 2 0.00
368 123 0.29
369 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (343 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTCAGC
CGACCGGAGAGGCATAATGCGCAAGCCGAGGATCAGCCCGATCGCCCTCTACGTGCTGTCGATCC
TGCTACCACAACCCTCGGTCCCACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
CCCACGAAACGAGCGTACGGGCGCTCAACCGACCGGAGAGGCAGAAAGCGTAAGCTGGGGATCGG
CTCGGTCCCCCCCATGTGCTACCGATCCTGCTGTCGCAACCATCGGTCCGATCCAATCTTAGACT
AGGAATGAACTCCATATG
Found at i:35317590 original size:26 final size:26
Alignment explanation
Indices: 35317551--35317603 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35317541 GGCTCAAAAT
*
35317551 CTTAGACTGAGAATGAACTCTGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
35317577 CTTAGACATG-GAATGAACTCCGTATG
1 CTTAGAC-TGAGAATGAACTCCGTATG
35317603 C
1 C
35317604 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:35319854 original size:26 final size:26
Alignment explanation
Indices: 35319815--35319866 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
35319805 GTCCGATCGA
35319815 TCTTAGACTAGGAATGAACTTCATAT
1 TCTTAGACTAGGAATGAACTTCATAT
*
35319841 TCTTAGACTGGGAATGAACTTCATAT
1 TCTTAGACTAGGAATGAACTTCATAT
35319867 GCCTAAGCCA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.33, C:0.15, G:0.17, T:0.35
Consensus pattern (26 bp):
TCTTAGACTAGGAATGAACTTCATAT
Found at i:35320741 original size:26 final size:26
Alignment explanation
Indices: 35320711--35320763 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
35320701 CCGATTCGAT
35320711 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
35320737 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
35320763 C
1 C
35320764 ATAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:35320845 original size:181 final size:182
Alignment explanation
Indices: 35320527--35320854 Score: 414
Period size: 181 Copynumber: 1.8 Consensus size: 182
35320517 GTGGCTCAAA
* * *
35320527 ATCTTAGACTAGGAATGAACTCCATATTATTAGACATGGAATGAACTCTGTATCCCTAAGCCAAC
1 ATCTTAGACTAGGAATGAACTCCATATGATTAGACATGGAATGAACTCCGTATCCATAAGCCAAC
* * ** * * * * *
35320592 CCACGAAACGAGTGTGTTGGAGCTCAGTCGACCGAAGAGGCAGAATGCGCAAGCGGGGATCGGCC
66 CCACGAAACAAGCGTGCGGGAGCTCAGTAGACCAAAGAGGCACAATGCACAAGCAGGGATCGGCC
*
35320657 TGATCCCCC-CTTGCGTGCTATCGATCTGCTACCGTAACCTCAGTCCGATTCG
131 CGATCCCCCTC-TGCGTGCTATCGATCTGCTACCGTAACCTCAGTCCGATTCG
* * * * *
35320709 ATCTTAGACTAGGAATGAACTCCGTATGCTTAGAC-TGGGGATGAACTCCGTATGCATAAGTCAA
1 ATCTTAGACTAGGAATGAACTCCATATGATTAGACAT-GGAATGAACTCCGTATCCATAAGCCAA
*
35320773 -CCACGAAACAAGCGTGCGGGCA-CTGAGCTAG-CCAAAGAGGCACAATGCACAAGCAGGGATCG
65 CCCACGAAACAAGCGTGCGGG-AGCTCAG-TAGACCAAAGAGGCACAATGCACAAGCAGGGATCG
35320835 GCCCGATCCCCCTCTGCGTG
128 GCCCGATCCCCCTCTGCGTG
35320855 ATGCCAGTCC
Statistics
Matches: 123, Mismatches: 19, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
181 65 0.53
182 58 0.47
ACGTcount: A:0.27, C:0.27, G:0.25, T:0.20
Consensus pattern (182 bp):
ATCTTAGACTAGGAATGAACTCCATATGATTAGACATGGAATGAACTCCGTATCCATAAGCCAAC
CCACGAAACAAGCGTGCGGGAGCTCAGTAGACCAAAGAGGCACAATGCACAAGCAGGGATCGGCC
CGATCCCCCTCTGCGTGCTATCGATCTGCTACCGTAACCTCAGTCCGATTCG
Found at i:35321094 original size:156 final size:159
Alignment explanation
Indices: 35320807--35321098 Score: 418
Period size: 157 Copynumber: 1.9 Consensus size: 159
35320797 GAGCTAGCCA
* *
35320807 AAGAGGCACAATGCACAAGCAGGGATCGGCCCGATCCCCCTCTGCGTGATGCCAGTCCCACTGCC
1 AAGAGGCACAATGCACAAGCAGGGATCAGCCCGATCCCCCTCTGCGAGATGCCAGTCCCACTGCC
* * *
35320872 AACAACCCTCGGTCTGACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACG
66 AACAACCCTCAGTCAGACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAACCACG
35320937 AAACGGGCCTACGGCGCTCAAACCGGTCG
131 AAACGGGCCTACGGCGCTCAAACCGGTCG
* * *
35320966 AAGAGGCAGAATGCACAAGC-GAGGATCAG-CC-ATTCCCCCT-TGCGAGCTGCCTGTCCCACTG
1 AAGAGGCACAATGCACAAGCAG-GGATCAGCCCGA-TCCCCCTCTGCGAGATGCCAGTCCCACTG
*
35321027 CC-ACAACCCCTCAGTCCAG-CTAGGGCTTAGACATGG-ATGAACTCCCTATGCCTAAGCTAAAC
64 CCAACAA-CCCTCAGT-CAGACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAAC
35321089 CACGAAACGG
127 CACGAAACGG
35321099 ACGTCCGGGC
Statistics
Matches: 120, Mismatches: 9, Indels: 11
0.86 0.06 0.08
Matches are distributed among these distances:
156 38 0.32
157 45 0.38
158 12 0.10
159 25 0.21
ACGTcount: A:0.27, C:0.34, G:0.24, T:0.16
Consensus pattern (159 bp):
AAGAGGCACAATGCACAAGCAGGGATCAGCCCGATCCCCCTCTGCGAGATGCCAGTCCCACTGCC
AACAACCCTCAGTCAGACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAACCACG
AAACGGGCCTACGGCGCTCAAACCGGTCG
Found at i:35321160 original size:157 final size:159
Alignment explanation
Indices: 35320807--35321161 Score: 388
Period size: 157 Copynumber: 2.3 Consensus size: 159
35320797 GAGCTAGCCA
* * *
35320807 AAGAGGCACAATGCACAAGC-AGGGATCGGCCCGATCCCCCTCTGCGTGATGCCAGTCCCACTGC
1 AAGAGGCAAAATGCACAAGCGA-GGATCGACCCGATCCCCCTCTGCGAGATGCCAGTCCCACTGC
* * *
35320871 CAACAACCCTCGGTCTGACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
65 CAACAACCCTCAGTCAGACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAACCAC
* *
35320936 GAAACGGGCCTACGGCGCTCAAACCGGTCG
130 GAAACGGACCTACGGCGCTCAAACCGCTCG
* * * *
35320966 AAGAGGCAGAATGCACAAGCGAGGATC-AGCC-ATTCCCCCT-TGCGAGCTGCCTGTCCCACTGC
1 AAGAGGCAAAATGCACAAGCGAGGATCGACCCGA-TCCCCCTCTGCGAGATGCCAGTCCCACTGC
*
35321028 C-ACAACCCCTCAGTCCAG-CTAGGGCTTAGACATGG-ATGAACTCCCTATGCCTAAGCTAAACC
65 CAACAA-CCCTCAGT-CAGACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAACC
* * * *
35321090 ACGAAACGGACGTCCGGGCGCTC-AACTGACT-T
128 ACGAAACGGACCTAC-GGCGCTCAAACCG-CTCG
* * **
35321122 TAGAGGTAAAATGCGTAAGTCGA-GATCGACCCGATCCCCC
1 AAGAGGCAAAATGCACAAG-CGAGGATCGACCCGATCCCCC
35321162 CTGGATCGGC
Statistics
Matches: 165, Mismatches: 22, Indels: 20
0.80 0.11 0.10
Matches are distributed among these distances:
156 63 0.38
157 65 0.39
158 12 0.07
159 24 0.15
160 1 0.01
ACGTcount: A:0.26, C:0.33, G:0.24, T:0.16
Consensus pattern (159 bp):
AAGAGGCAAAATGCACAAGCGAGGATCGACCCGATCCCCCTCTGCGAGATGCCAGTCCCACTGCC
AACAACCCTCAGTCAGACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAACCACG
AAACGGACCTACGGCGCTCAAACCGCTCG
Found at i:35321234 original size:26 final size:26
Alignment explanation
Indices: 35321198--35321250 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35321188 CTAGTTTGAT
*
35321198 CTTAGACT-GGGACTGAACTCCATATG
1 CTTAGACTGGGGA-TGAACCCCATATG
35321224 CTTAGACTGGGGATGAACCCCATATG
1 CTTAGACTGGGGATGAACCCCATATG
35321250 C
1 C
35321251 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACCCCATATG
Found at i:35321914 original size:26 final size:26
Alignment explanation
Indices: 35321863--35321915 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
35321853 GGCTCAAAAT
* *
35321863 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
35321889 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
35321915 C
1 C
35321916 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:35322768 original size:26 final size:26
Alignment explanation
Indices: 35322730--35322782 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35322720 CCGATCCGAT
*
35322730 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTATGTATG
35322756 CTTAGAC-ATGGAATGAACTATGTATG
1 CTTAGACTA-GGAATGAACTATGTATG
35322782 C
1 C
35322783 CCAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.32, C:0.15, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTATGTATG
Found at i:35323110 original size:159 final size:157
Alignment explanation
Indices: 35322825--35323250 Score: 455
Period size: 159 Copynumber: 2.7 Consensus size: 157
35322815 CTCAGCCAAT
* * * * *
35322825 CGGAGAGGCAGAATGCGTAAGCCCGGGATCGACCCGGTCCCCCCTACGTGCTGTCAATCCTGCTA
1 CGGAGAGGCAGAATGCGCAAG-CCGGGATCGACCCGGTCCCCCCTGCGTGCTGCCAGTCCTGCTG
* * * * * *
35322890 CCGCAACCCCCAGTCAGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAT
65 TCGCAACCCTCAGTCAGGTCTGAGCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCAC
*
35322955 GAAACGAGCGTGCAAGCACTGAG-CGGAC
130 GAAACGAGCGTGCAAGCACTCAGTCGG-C
* * * *
35322983 GGGAGAGGCATAATGCGCAAGCCGTGGATCGACCCGGTGCCCCTCTGCGTGCTGCCAGTCCCGCT
1 CGGAGAGGCAGAATGCGCAAGCCG-GGATCGACCCGGT-CCCCCCTGCGTGCTGCCAGTCCTGCT
* * *
35323048 GTCACAACCCTCAGTCCGG-CTGGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACC
64 GTCGCAACCCTCAGTCAGGTCT-GAGCTTAGAC-TGGGAATGAACTCCCTATGCCTAAGCCAACC
* * *
35323111 CACGAAACGGGCGTGCAGGCGCTCAGTCGGC
127 CACGAAACGAGCGTGCAAGCACTCAGTCGGC
* * * * *
35323142 CGGAGAGGCAGAATGCGCAAGCTGAGGATCGGCTCGGTCCCCCCTGCATGCTACC-GATCCTGCT
1 CGGAGAGGCAGAATGCGCAAGCCG-GGATCGACCCGGTCCCCCCTGCGTGCTGCCAG-TCCTGCT
* ** * * *
35323206 GTCGCAACCCTCTGTTTGATCCGATCTTAGACTGGGAATGAACTC
64 GTCGCAACCCTCAGTCAGGTCTGAGCTTAGACTGGGAATGAACTC
35323251 GATATGTTTA
Statistics
Matches: 220, Mismatches: 40, Indels: 16
0.80 0.14 0.06
Matches are distributed among these distances:
157 5 0.02
158 86 0.39
159 125 0.57
160 4 0.02
ACGTcount: A:0.22, C:0.32, G:0.28, T:0.18
Consensus pattern (157 bp):
CGGAGAGGCAGAATGCGCAAGCCGGGATCGACCCGGTCCCCCCTGCGTGCTGCCAGTCCTGCTGT
CGCAACCCTCAGTCAGGTCTGAGCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACG
AAACGAGCGTGCAAGCACTCAGTCGGC
Found at i:35324665 original size:26 final size:26
Alignment explanation
Indices: 35324627--35324679 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35324617 GGCTCAAAAT
35324627 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
35324653 CTTAGACAT-GGAATGCACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
35324679 C
1 C
35324680 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35325016 original size:159 final size:156
Alignment explanation
Indices: 35324652--35325058 Score: 387
Period size: 159 Copynumber: 2.6 Consensus size: 156
35324642 AACTCCGTAT
* * *
35324652 GCTTAGACATGGAATGCACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * ** **
35324717 CCGATCGGAGAGATAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCTGTGTGCTGTTGATCTT
66 CCGACCGAAGAGATAGAATGCGCAAGCCAGGGATCGACCCAGTCCCCCTGCGTGCTGCAGATCCC
* *
35324782 GCTGCCACAACCCTCGGTCCAATCTGA
131 ACTACCACAACCCTCGGTCC-ATCTGA
* * * * * *
35324809 TCTTAGAC-TGGGAATGAACTCTATATGCATAAGTCAACCCATGAAACGAGCGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* *
35324873 GCCGACCGAAGTGGA-ATAATGCGCAAG-CAGGGGATCGACCCAGTCCCCCTCTGCGTGCTGCCA
65 GCCGACCGAAG-AGATAGAATGCGCAAGCCA-GGGATCGACCCAGT-CCCC-CTGCGTGCTG-CA
* *
35324936 G-TCCCACTACCACAACCCTCAGTGTGGC-TC-GG
125 GATCCCACTACCACAACCCTC-G-GT-CCATCTGA
* * * *
35324968 GCTTTGACATGGAATGAACTCCCTATGCCTGAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* **
35325033 CC-AGCCGGAGAGGCAGAATGCGCAAG
66 CCGA-CCGAAGAGATAGAATGCGCAAG
35325059 TTGGGGATCA
Statistics
Matches: 200, Mismatches: 38, Indels: 22
0.77 0.15 0.08
Matches are distributed among these distances:
156 3 0.01
157 85 0.43
158 8 0.04
159 96 0.48
160 5 0.03
161 2 0.01
162 1 0.00
ACGTcount: A:0.25, C:0.30, G:0.28, T:0.17
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGACCGAAGAGATAGAATGCGCAAGCCAGGGATCGACCCAGTCCCCCTGCGTGCTGCAGATCCC
ACTACCACAACCCTCGGTCCATCTGA
Found at i:35325734 original size:26 final size:26
Alignment explanation
Indices: 35325705--35325757 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
35325695 CCAGTCCGAT
35325705 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
35325731 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
35325757 C
1 C
35325758 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:35330058 original size:159 final size:157
Alignment explanation
Indices: 35329698--35330115 Score: 373
Period size: 159 Copynumber: 2.7 Consensus size: 157
35329688 CTCCGTATGC
* ** *
35329698 TTAGACATGGAATGAACTCCGTATGCCTAA-CCAACCCACGAAACGAGCATGCAGGCGTTCAGCT
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGAGCATGCAGGCACTCAGCC
** * * * * * **
35329762 GGCCAGAGAGGCAGAATATGCAAGTGGAGGATGGGCCCGATCCCGCCTGTGCGCTGTCGATCCTG
66 GGCCAGAGAGGCAGAATACACAAGCGGAGGATCGACCCGATCCCGCCTCTGCGCTGCCGATCCCA
* * **
35329827 CTGCACAACCCTCGATCCGGTCTGATT
131 CCGCACAACCCTCGATCCGGTCTAAGA
* * * * *
35329854 TTAGAC-TGAGAATGAACTCCGTATGCCTAAG-TCAAACCACAAAACGAGCATTCGGGCACTGAG
1 TTAGACATG-GAATGAACTCCGTATGCCTAAGCT-AACCCACGAAACGAGCATGCAGGCACTCAG
* *
35329917 CCGGCCAGAGAGGCATAATGCACAAGCCGG-GGATCGACCCGATCCC-CCTCTGCCTGCTGCCGA
64 CCGGCCAGAGAGGCAGAATACACAAG-CGGAGGATCGACCCGATCCCGCCTCTG-C-GCTGCCGA
*
35329980 TCCCACCGCCACAACCCTCGGTCCGG-CTAAGGA
126 TCCCACCG-CACAACCCTCGATCCGGTCTAA-GA
* * * *** * **
35330013 TTAGACATGGAATGACCACCTTATGCCTAAGCTAACCCACGAAACGATTGTGCGGGCGTTCAGCC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGAGCATGCAGGCACTCAGCC
* * * *
35330078 GACCGGAGAGGCAGAATACGCAAGTCAG-GGATCGACCC
66 GGCCAGAGAGGCAGAATACACAAG-CGGAGGATCGACCC
35330116 AGTCCCCCCT
Statistics
Matches: 208, Mismatches: 44, Indels: 17
0.77 0.16 0.06
Matches are distributed among these distances:
155 2 0.01
156 32 0.15
157 59 0.28
158 17 0.08
159 95 0.46
160 3 0.01
ACGTcount: A:0.26, C:0.30, G:0.26, T:0.17
Consensus pattern (157 bp):
TTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGAGCATGCAGGCACTCAGCC
GGCCAGAGAGGCAGAATACACAAGCGGAGGATCGACCCGATCCCGCCTCTGCGCTGCCGATCCCA
CCGCACAACCCTCGATCCGGTCTAAGA
Found at i:35330199 original size:26 final size:26
Alignment explanation
Indices: 35330170--35330220 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
35330160 CCGGTCTGAT
35330170 CTTAGACCAGCAATGAACTCCGTATA
1 CTTAGACCAGCAATGAACTCCGTATA
** **
35330196 CTTAGACTGGGGATGAACTCCGTAT
1 CTTAGACCAGCAATGAACTCCGTAT
35330221 GCCTAAGTCG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.29, C:0.24, G:0.22, T:0.25
Consensus pattern (26 bp):
CTTAGACCAGCAATGAACTCCGTATA
Found at i:35331790 original size:11 final size:11
Alignment explanation
Indices: 35331774--35331799 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
35331764 GCTCTTCGGT
35331774 GATGCTCTGAC
1 GATGCTCTGAC
35331785 GATGCTCTGAC
1 GATGCTCTGAC
35331796 GATG
1 GATG
35331800 GTGCCCCGAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.19, C:0.23, G:0.31, T:0.27
Consensus pattern (11 bp):
GATGCTCTGAC
Found at i:35331907 original size:26 final size:26
Alignment explanation
Indices: 35331869--35331921 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
35331859 GGCTCAAACT
35331869 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35331895 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
35331921 C
1 C
35331922 CTAAGCTAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35333229 original size:159 final size:159
Alignment explanation
Indices: 35332947--35333437 Score: 377
Period size: 159 Copynumber: 3.1 Consensus size: 159
35332937 TAGATCGGGG
** * ** * *
35332947 ATGAACTTTGTATGCCTAAGTCAACCCATGAAACGAGTGTGTGGGCGCTCAACCTATCGGAGAGG
1 ATGAACTCCGTATGCCTAACTCAACCCATGAAACGAGTGTACGGGCGCTCAACCTACCGAAGAGG
* ** * * * * *
35333012 TAGAATGCGTAAGCCGGGGATCGACTCGGTCCCCCTCTACATGCTGTCGATCCTGCTATCGCAAC
66 CAGAATGCACAAGCCAGGGATCGACTCGATCCCCCTCTACATGCTATCGATCCCGCTATCACAAC
35333077 CCTCGATCCAGTCCGATCTTAGACTGGGA
131 CCTCGATCCAGTCCGATCTTAGACTGGGA
* *
35333106 ATGAACTCCGTATGCCTAACTCAACCCATGAAACGAGTGTACGGGCGCTGAGCC-AGCCGAAGAG
1 ATGAACTCCGTATGCCTAACTCAACCCATGAAACGAGTGTACGGGCGCTCAACCTA-CCGAAGAG
* * * *
35333170 GCATAATGCACAAGCCATGGTTC-ATCTCGATCCCCCTTTACATGCTATC-AGTCCCGCTATCAC
65 GCAGAATGCACAAGCCAGGGATCGA-CTCGATCCCCCTCTACATGCTATCGA-TCCCGCTATCAC
* * * ** *
35333233 AACCCTCGATTC-GGCTAGGGCTTAGACAT-TGA
128 AACCCTCGATCCAGTC-CGATCTTAGAC-TGGGA
* * * * * * ** *** *
35333265 TTGAACTCCGTATGTCTAAGC-CAACCCATGAAATGAGCGTGCGGGCACTCAGTCGGTCGGAGAG
1 ATGAACTCCGTATGCCTAA-CTCAACCCATGAAACGAGTGTACGGGCGCTCAACCTACCGAAGAG
* * ** * * * * *
35333329 GTAGAATGCGCAAGCTGGGGATTGAC-CTGATCCCCC-CTGCGTGCTATCGATCCTGCTATCGCA
65 GCAGAATGCACAAGCCAGGGATCGACTC-GATCCCCCTCTACATGCTATCGATCCCGCTATCACA
* * * * **
35333392 ACCCTCGGTCCAATCTGATCCTAGACTTTGA
129 ACCCTCGATCCAGTCCGATCTTAGACTGGGA
35333423 ATGAACTCCGTATGC
1 ATGAACTCCGTATGC
35333438 TTAGACATGG
Statistics
Matches: 259, Mismatches: 61, Indels: 25
0.75 0.18 0.07
Matches are distributed among these distances:
157 1 0.00
158 58 0.22
159 197 0.76
160 3 0.01
ACGTcount: A:0.24, C:0.29, G:0.24, T:0.23
Consensus pattern (159 bp):
ATGAACTCCGTATGCCTAACTCAACCCATGAAACGAGTGTACGGGCGCTCAACCTACCGAAGAGG
CAGAATGCACAAGCCAGGGATCGACTCGATCCCCCTCTACATGCTATCGATCCCGCTATCACAAC
CCTCGATCCAGTCCGATCTTAGACTGGGA
Found at i:35333547 original size:502 final size:502
Alignment explanation
Indices: 35332322--35334455 Score: 1835
Period size: 502 Copynumber: 4.2 Consensus size: 502
35332312 TGCTGGCCAA
* ** * * ** * *
35332322 AGAGGCAGAACGCGCAAGCCAAGGATCGACTC-AGTCCCCCGTTATGTGCTGTCGATCCTACTAC
1 AGAGGCAGAATGCGCAAGCCGGGGATCGACCCGA-TCCCCC-CTGCGTGCTGTCGATCCTGCTAT
* ** ** **
35332386 CGCAACTCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATCTAATGA
64 CGCAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGA
* * *
35332451 ACTTTGTATGCCTAAGCCAACCCACGAAACGAGCATGCA-GGCGCTCAGCC-GACCGAAGAGGCA
129 ACTTCGTATGCCTAAGCCAACCCACGAAACGAG--TGTACGGCGCTCAGCCAG-CCGGAGAGGCA
* * * * * * * * *
35332514 GAATGCCCAAGCCGAGGACCGACCTGGTCCCCCCCGGCATGCTATCGATCCTACTAT-TGTAACC
191 GAATGCGCAAGCCGGGGACCG-CCCGGTCCCCCTCTGCATGCTGTCGATCCTGCTATCAGCAACC
* * *
35332578 CTCGATTCGGTCCGATCATAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACG-AACTGA
255 CTCGATCCAGTCCGATCATAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAAC-GA
* * * * * * * * * ** * *
35332642 GCATTCGGGCGCTGAACCGGCCGAAAAGCCATAATACGTAAGCTGGGGATCGGT-CTGGTCCCCC
319 GCGTGCGAGCGCTGAGCCAGCCGAAGAGGCATAATGCGCAAGCCAGGGATCGATCCCGGTCCCCC
* * * **
35332706 TCTACGTGCTGTCGTTCCCGCTA-CAACAACCATCGGTCCGACT-GGGGGTAGACATGGAATGAA
384 TCTACGTGCTGTCGATCCCGCTATC-ACAACCCTCGATCCGACTAGGGCTTAGACATGGAATGAA
* *
35332769 CTCCCTATGCTTAAGCCAACCCACCAAACGAGCGTGCGGGCACTCAACCGGCCAG
448 CTCCCTATGCCTAAGCCAACCCACCAAACGAGCGTGCGGGCACTCAACCGGTCAG
* * * * ** * * * *
35332824 AGAGGTAGAATGCGCAAGCCAGGGATCGGCCCGAT-CACCCAACGTGCTGCCAATCCTGCTGTCT
1 AGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCCTGCTATCG
* * * * *
35332888 CAACCCTCGGTCCTGTCCGATCTTAGACTGGGAATGAACTCCATATGTTTAGATC-GGGGATGAA
66 CAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGA-CATGGAATGAA
* * * ** * * *
35332952 CTTTGTATGCCTAAGTCAACCCATGAAACGAGTGTGTGGGCGCTCAACCTA-TCGGAGAGGTAGA
130 CTTCGTATGCCTAAGCCAACCCACGAAACGAGTGT-ACGGCGCTCAGCC-AGCCGGAGAGGCAGA
* * * *
35333016 ATGCGTAAGCCGGGGATCGACTCGGTCCCCCTCTACATGCTGTCGATCCTGCTATC-GCAACCCT
193 ATGCGCAAGCCGGGGACCG-CCCGGTCCCCCTCTGCATGCTGTCGATCCTGCTATCAGCAACCCT
* * * *
35333080 CGATCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAACTCAACCCATGAAACGAGTG
257 CGATCCAGTCCGATCATAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCG
* * * * * * * *
35333145 TACGGGCGCTGAGCCAGCCGAAGAGGCATAATGCACAAGCCATGGTTC-ATCTCGATCCCCCTTT
322 TGCGAGCGCTGAGCCAGCCGAAGAGGCATAATGCGCAAGCCAGGGATCGATCCCGGTCCCCCTCT
* * * * * *
35333209 ACATGCTATC-AGTCCCGCTATCACAACCCTCGATTCGGCTAGGGCTTAGACATTGATTGAACTC
387 ACGTGCTGTCGA-TCCCGCTATCACAACCCTCGATCCGACTAGGGCTTAGACATGGAATGAACTC
* * ** * ** *
35333273 CGTATGTCTAAGCCAACCCATGAAATGAGCGTGCGGGCACTCAGTCGGTCGG
451 CCTATGCCTAAGCCAACCCACCAAACGAGCGTGCGGGCACTCAACCGGTCAG
* * * * *
35333325 AGAGGTAGAATGCGCAAGCTGGGGATTGACCTGATCCCCCCTGCGTGCTATCGATCCTGCTATCG
1 AGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCCTGCTATCG
* * ** *
35333390 CAACCCTCGGTCCAATCTGATCCTAGACTTTGAATGAACTCCGTATGCTTAGACATGGAATGAAC
66 CAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAAC
* *
35333455 TGCGTATGCCTAAGCCAACCCACGAAACGAGTGTACGAGCGC-CTAGCCAGCCGGAGAGGTAGAA
131 TTCGTATGCCTAAGCCAACCCACGAAACGAGTGTACG-GCGCTC-AGCCAGCCGGAGAGGCAGAA
* * * ** *
35333519 CGCGCAAGCCAGGGACCGCCCAGGT-CCCCTCCTGCCTGCTGTTAATCCTGCTA-CTGCAACCCT
194 TGCGCAAGCCGGGGACCGCCC-GGTCCCCCT-CTGCATGCTGTCGATCCTGCTATCAGCAACCCT
* * * * *
35333582 C-AGTCC-GATTCGATCATAGATTGGGAATGAACTCCGTATGCCCAAGTCAACCCATGAAATGAG
257 CGA-TCCAG-TCCGATCATAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAG
* * * * * *
35333645 CGTGCGAGCACT-ACGCC-GATCGGAGAGGCATAATGCGCGAGCCAGGGATCG-GCCCGTTCCCC
320 CGTGCGAGCGCTGA-GCCAG-CCGAAGAGGCATAATGCGCAAGCCAGGGATCGATCCCGGTCCCC
* * * * * * ** * * **
35333707 CTC--CGTGTTTTGTCGGTCCCGTTGTGACAACCCTC-AGTCTGGTTGGGGTTTAGACACAGAAT
383 CTCTACGTG--CTGTCGATCCCGCTATCACAACCCTCGA-TCCGACTAGGGCTTAGACATGGAAT
* * *
35333769 GAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCGAGCACTCAACCGGTC-G
445 GAACTCCCTATGCCTAAGCCAACCCACCAAACGAGCGTGCGGGCACTCAACCGGTCAG
** *
35333826 AAGAGGCAGAATAAGCAAGCCGGGGATCGACCCGATCCCACCTGCGTGCTGTCGATCCTGCTGTT
1 -AGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTGTCGAT-C--C---T
* **
35333891 GGTCCTGTTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAG
59 -G--CT-AT--CGCAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAG
* * * ** * * **
35333956 ACATGGAATGAAATTCGTATGCCTAAGCCCACCCATGAAACGAGCATGCGGGCACTCAGCCAATC
118 ACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGTGTAC-GGCGCTCAGCCAGCC
* * * * *
35334021 GGAGAGGCAGAATGTGCAAGCCGGGGATCAGCCCGGTGCCCC-CTGCATGTTGTTGATCCTGCT-
182 GGAGAGGCAGAATGCGCAAGCCGGGGA-CCGCCCGGTCCCCCTCTGCATGCTGTCGATCCTGCTA
* * * * * * *
35334084 GCAACAACCCTCAATCAAGTCCGATCTTAGACTAGGAATGAACTCCATATGCCTAAGTCAACTCA
246 TCAGCAACCCTCGATCCAGTCCGATCATAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * *
35334149 TGGAACGAGCGTGCGAGCGCTGAGCCAACCGGAGAGGCATAATGCGCAAGCCAGGGATCGA-CCC
311 TGAAACGAGCGTGCGAGCGCTGAGCCAGCCGAAGAGGCATAATGCGCAAGCCAGGGATCGATCCC
** * * *
35334213 GGTCCCCCTCTACGTGCTGTCGATCCCGCTGCCACAACCCTAGGTCCAACTAGGGCTTAGACATG
376 GGTCCCCCTCTACGTGCTGTCGATCCCGCTATCACAACCCTCGATCCGACTAGGGCTTAGACATG
** * * * * *
35334278 GAATGAACTCCCTATGCCTAAGCTGACCCATCAAAC-ACACGTGTGGGCGCTCAACCGATCAG
441 GAATGAACTCCCTATGCCTAAGCCAACCCACCAAACGA-GCGTGCGGGCACTCAACCGGTCAG
* * * * * * * * **
35334340 AGAGGCAGAATGCGCAAGCTGAGGATCGGCTCGGTCCCTCCCTGCGCGCTATCGATCCTGTTGCC
1 AGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCC-CCCTGCGTGCTGTCGATCCTGCTATC
* * * *
35334405 GCAACACCCTCAGTCCAATCTGATCTTAGACTAGGAATGAAATCCATATGC
65 GC-A-ACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCATATGC
35334456 CTAAATCAAC
Statistics
Matches: 1301, Mismatches: 271, Indels: 118
0.77 0.16 0.07
Matches are distributed among these distances:
498 2 0.00
499 1 0.00
500 299 0.23
501 117 0.09
502 427 0.33
503 3 0.00
504 40 0.03
505 2 0.00
507 1 0.00
508 2 0.00
509 1 0.00
511 3 0.00
512 1 0.00
513 245 0.19
514 142 0.11
515 15 0.01
ACGTcount: A:0.25, C:0.30, G:0.25, T:0.20
Consensus pattern (502 bp):
AGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCCTGCTATCG
CAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAAC
TTCGTATGCCTAAGCCAACCCACGAAACGAGTGTACGGCGCTCAGCCAGCCGGAGAGGCAGAATG
CGCAAGCCGGGGACCGCCCGGTCCCCCTCTGCATGCTGTCGATCCTGCTATCAGCAACCCTCGAT
CCAGTCCGATCATAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCG
AGCGCTGAGCCAGCCGAAGAGGCATAATGCGCAAGCCAGGGATCGATCCCGGTCCCCCTCTACGT
GCTGTCGATCCCGCTATCACAACCCTCGATCCGACTAGGGCTTAGACATGGAATGAACTCCCTAT
GCCTAAGCCAACCCACCAAACGAGCGTGCGGGCACTCAACCGGTCAG
Found at i:35334298 original size:159 final size:157
Alignment explanation
Indices: 35333950--35334731 Score: 581
Period size: 159 Copynumber: 4.9 Consensus size: 157
35333940 AACTCCATAT
* * * * * *
35333950 GCTTAGACATGGAATGAAATTCGTATGCCTAAGCCCACCCATGAAACGAGCATGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * * *
35334015 CCAATCGGAGAGGCAGAATGTGCAAGCCGGGGATC-AGCCCGGTGCCCCCTGCATGTTGTTGATC
66 CCAATCGGAGAGGCAGAATGCGCAAGCCAGGGATCGA-CCCGGTCCCCCCTGCGTGCTGTCGATC
* * * *
35334079 CTGCTGCAACAACCCTCAAT-CAAGTCCGA
130 CCGCTGCCACAACCCTCAGTCCAA--CTGA
* * * * * *
35334108 TCTTAGAC-TAGGAATGAACTCCATATGCCTAAGTCAACTCATGGAACGAGCGTGCGAGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
* * *
35334172 GCCAACCGGAGAGGCATAATGCGCAAGCCAGGGATCGACCCGGTCCCCCTCTACGTGCTGTCGAT
65 GCCAATCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGGTCCCCC-CTGCGTGCTGTCGAT
*
35334237 CCCGCTGCCACAACCCT-AGGTCCAACTAGG
129 CCCGCTGCCACAACCCTCA-GTCCAACT-GA
* ** * * *
35334267 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCTGACCCATCAAAC-ACACGTGTGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGA-GCGTGCGGGCGCTCA
* * * * * * * *
35334331 ACCGATCAGAGAGGCAGAATGCGCAAG-CTGAGGATCGGCTCGGTCCCTCCCTGCGCGCTATCGA
65 GCCAATCGGAGAGGCAGAATGCGCAAGCCAG-GGATCGACCCGGTCCC-CCCTGCGTGCTGTCGA
* * *
35334395 TCCTGTTGCCGCAACACCCTCAGTCCAATCTGA
128 TCCCGCTGCCAC-A-ACCCTCAGTCCAA-CTGA
* * ** * * *
35334428 TCTTAGAC-TAGGAATGAAATCCATATGCCTAAATCAACCCATGAAATGAGCGTACGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
** * * * * ** * * * *
35334492 GCCGGTCGAAGACGTATAACACGCAAGCCAGGGATTGGCTCGGTCCCCCTCTGCGTGCTGTC-AG
65 GCCAATCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGGTCCCCC-CTGCGTGCTGTCGAT
* ** *
35334556 CCCTGCTGCCACAACCTTCAGTCCGGCTGGG
129 CCC-GCTGCCACAACCCTCAGTCCAACT-GA
* * ** * *
35334587 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTATGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* ** ** * * * ** *
35334652 ACAGCCAAAAAGGTAGAATGCACAAGCTGGGGATCGACCTGGTCCCCCCTGCGTGCTGTCGATCC
66 CCAATCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCC
* * *
35334717 TGCTACCGCAACCCT
131 CGCTGCCACAACCCT
35334732 TGGTCCGGTT
Statistics
Matches: 483, Mismatches: 119, Indels: 44
0.75 0.18 0.07
Matches are distributed among these distances:
157 1 0.00
158 122 0.25
159 231 0.48
160 15 0.03
161 108 0.22
162 6 0.01
ACGTcount: A:0.25, C:0.31, G:0.25, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
CCAATCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCC
CGCTGCCACAACCCTCAGTCCAACTGA
Found at i:35334538 original size:320 final size:317
Alignment explanation
Indices: 35333950--35334634 Score: 788
Period size: 320 Copynumber: 2.2 Consensus size: 317
35333940 AACTCCATAT
* * * * *
35333950 GCTTAGACATGGAATGAAATTCGTATGCCTAAGCCCACCCATGAAACGAGCATGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCCACCCATCAAACGAGCATGCGGGCACTCAA
* * * * * * * *
35334015 CCAATCGGAGAGGCAGAATGTGCAAGCCGGGGATCAGCCCGGTGCCCCCTGCATGTTGTTGATCC
66 CCAATCAGAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCGGTCCCCCCTGCACGCTATCGATCC
* * *
35334080 TGCTGCAACAACCCTCAATCAAGTCCGATCTTAGACTAGGAATGAACTCCATATGCCTAAGTCAA
131 TGCCGCAACAACCCTCAATCAAGTCCGATCTTAGACTAGGAATGAAATCCATATGCCTAAATCAA
* * * * * **
35334145 CTCATGGAACGAGCGTGCGAGCGCTGAGCCAACCGGAGAGGCATAATGCGCAAGCCAGGGATCGA
196 CCCATGAAACGAGCGTACGAGCGCTGAGCCAACCGAAGACGCATAACACGCAAGCCAGGGATCGA
*
35334210 CCCGGTCCCCCTCTACGTGCTGTCGATCCC-GCTGCCACAACCCT-AGGTCCAACTAGG
261 CCCGGTCCCCCTCTACGTGCTGTC-AGCCCTGCTGCCACAACCCTCA-GTCCAACTAGG
** * *
35334267 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCTGACCCATCAAAC-A-CACGTGTGGGCGCTC
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCCACCCATCAAACGAGCA--TGCGGGCACTC
* * * * *
35334330 AACCGATCAGAGAGGCAGAATGCGCAAGCTGAGGATCGGCTCGGTCCCTCCCTGCGCGCTATCGA
64 AACCAATCAGAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCGGTCCC-CCCTGCACGCTATCGA
* *
35334395 TCCTGTTGCCGCAAC-ACCCTCAGTCCAA-TCTGATCTTAGACTAGGAATGAAATCCATATGCCT
128 TCC---TGCCGCAACAACCCTCAAT-CAAGTCCGATCTTAGACTAGGAATGAAATCCATATGCCT
* * *** *
35334458 AAATCAACCCATGAAATGAGCGTACGGGCGCTGAGCCGGTCGAAGACGTATAACACGCAAGCCAG
189 AAATCAACCCATGAAACGAGCGTACGAGCGCTGAGCCAACCGAAGACGCATAACACGCAAGCCAG
* * * * * ** *
35334523 GGATTGGCTCGGTCCCCCTCTGCGTGCTGTCAGCCCTGCTGCCACAACCTTCAGTCCGGCTGGG
254 GGATCGACCCGGTCCCCCTCTACGTGCTGTCAGCCCTGCTGCCACAACCCTCAGTCCAACTAGG
* *
35334587 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCCACCCATCAAACG
35334635 GGCGTATGGG
Statistics
Matches: 306, Mismatches: 52, Indels: 16
0.82 0.14 0.04
Matches are distributed among these distances:
315 2 0.01
316 1 0.00
317 89 0.29
318 14 0.05
319 4 0.01
320 184 0.60
321 12 0.04
ACGTcount: A:0.26, C:0.31, G:0.25, T:0.19
Consensus pattern (317 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCCACCCATCAAACGAGCATGCGGGCACTCAA
CCAATCAGAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCGGTCCCCCCTGCACGCTATCGATCC
TGCCGCAACAACCCTCAATCAAGTCCGATCTTAGACTAGGAATGAAATCCATATGCCTAAATCAA
CCCATGAAACGAGCGTACGAGCGCTGAGCCAACCGAAGACGCATAACACGCAAGCCAGGGATCGA
CCCGGTCCCCCTCTACGTGCTGTCAGCCCTGCTGCCACAACCCTCAGTCCAACTAGG
Found at i:35334672 original size:320 final size:320
Alignment explanation
Indices: 35334084--35334728 Score: 780
Period size: 320 Copynumber: 2.0 Consensus size: 320
35334074 TGATCCTGCT
* * *
35334084 GCAACAACCCTCAATCAAGTCCGATCTTAGACTAGGAATGAACTCCATATGCCTAAGTCAACTCA
1 GCAACAACCCTCAATCAAGTCCGATCTTAGACTAGGAATGAAATCCATATGCCTAAATCAACCCA
* * * * **
35334149 TGGAACGAGCGTGCGAGCGCTGAGCCAACCGGAGAGGCATAATGCGCAAGCCAGGGATCGACCCG
66 TGAAACGAGCGTACGAGCGCTGAGCCAACCGAAGACGCATAACACGCAAGCCAGGGATCGACCCG
*
35334214 GTCCCCCTCTACGTGCTGTCGATCCCGCTGCCACAACCCTAGGTCCAACTAGGGCTTAGACATGG
131 GTCCCCCTCTACGTGCTGTCGAGCCCGCTGCCACAACCCTAGGTCCAACTAGGGCTTAGACATGG
** * * * * *
35334279 AATGAACTCCCTATGCCTAAGCTGACCCATCAAACACACGTGTGGGCGCTCAACCGATCAGAGAG
196 AATGAACTCCCTATGCCTAAGCCAACCCATCAAACACACGTATGGGCGCTCAACAGACCAAAAAG
* * * *
35334344 GCAGAATGCGCAAGCTGAGGATCG-GCTCGGTCCCTCCCTGCGCGCTATCGATCCTGTTGCC
261 GCAGAATGCACAAGCTGAGGATCGACCT-GGTCCC-CCCTGCGCGCTATCGATCCTGCTACC
* *
35334405 GCAAC-ACCCTCAGTCCAA-TCTGATCTTAGACTAGGAATGAAATCCATATGCCTAAATCAACCC
1 GCAACAACCCTCAAT-CAAGTCCGATCTTAGACTAGGAATGAAATCCATATGCCTAAATCAACCC
* * *** * * * *
35334468 ATGAAATGAGCGTACGGGCGCTGAGCCGGTCGAAGACGTATAACACGCAAGCCAGGGATTGGCTC
65 ATGAAACGAGCGTACGAGCGCTGAGCCAACCGAAGACGCATAACACGCAAGCCAGGGATCGACCC
* * ** *
35334533 GGTCCCCCTCTGCGTGCTGTC-AGCCCTGCTGCCACAACCTTCA-GTCCGGCTGGGGCTTAGACA
130 GGTCCCCCTCTACGTGCTGTCGAGCCC-GCTGCCACAACCCT-AGGTCCAACTAGGGCTTAGACA
* *** *
35334596 TGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTATGGGTGCTCAAACAG-CCAA
193 TGGAATGAACTCCCTATGCCTAAGCCAACCCATCAAACACACGTATGGGCGCTC-AACAGACCAA
* * * *
35334660 AAAGGTAGAATGCACAAGCTGGGGATCGACCTGGTCCCCCCTGCGTGCTGTCGATCCTGCTACC
257 AAAGGCAGAATGCACAAGCTGAGGATCGACCTGGTCCCCCCTGCGCGCTATCGATCCTGCTACC
35334724 GCAAC
1 GCAAC
35334729 CCTTGGTCCG
Statistics
Matches: 273, Mismatches: 46, Indels: 12
0.82 0.14 0.04
Matches are distributed among these distances:
319 31 0.11
320 227 0.83
321 15 0.05
ACGTcount: A:0.25, C:0.31, G:0.25, T:0.19
Consensus pattern (320 bp):
GCAACAACCCTCAATCAAGTCCGATCTTAGACTAGGAATGAAATCCATATGCCTAAATCAACCCA
TGAAACGAGCGTACGAGCGCTGAGCCAACCGAAGACGCATAACACGCAAGCCAGGGATCGACCCG
GTCCCCCTCTACGTGCTGTCGAGCCCGCTGCCACAACCCTAGGTCCAACTAGGGCTTAGACATGG
AATGAACTCCCTATGCCTAAGCCAACCCATCAAACACACGTATGGGCGCTCAACAGACCAAAAAG
GCAGAATGCACAAGCTGAGGATCGACCTGGTCCCCCCTGCGCGCTATCGATCCTGCTACC
Found at i:35334782 original size:26 final size:26
Alignment explanation
Indices: 35334746--35334798 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
35334736 CCGGTTCAAT
*
35334746 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
35334772 CTTAGATTGGGGATGAGCTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35334798 C
1 C
35334799 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35335505 original size:26 final size:26
Alignment explanation
Indices: 35335467--35335519 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35335457 TCCTCAAAAT
35335467 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
35335493 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
35335519 C
1 C
35335520 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35335847 original size:159 final size:158
Alignment explanation
Indices: 35335492--35335866 Score: 407
Period size: 158 Copynumber: 2.4 Consensus size: 158
35335482 AACTCCGTAT
* *
35335492 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAA
* * * *
35335557 CCAGTTAGAGAGGCAGAATGCGTAAGCCAAGGATCGGCCCAGTCCCCCCTGCGTGTTGTCAATCA
66 CCAGTGAGAGAGGCAGAATGCGTAAGCCAAGGATCGACCCAGTCCCCCCTGCGTGCTGCCAATCA
** * * *
35335622 TGCTGCCGCAACCCTCAATCTGGTCTGA
131 CACTGCCACAACCCTCAATCTCGACTGA
* * * * * * ** *
35335650 TCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACAAGCGTGTGGGCGTTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCA
* * * *
35335714 GCCAGCTGA-AGAGGCATAATGCGTAAGCTAAGGATCGACCC-GATCCCCCTCTGCGTGCTGCCG
65 ACCAG-TGAGAGAGGCAGAATGCGTAAGCCAAGGATCGACCCAG-TCCCCC-CTGCGTGCTGCCA
* * * ** *
35335777 GTCCCACTGCCATAACCCTCGGTC-CGACTGGG
127 ATCACACTGCCACAACCCTCAATCTCGACT-GA
35335809 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGG
35335867 TCATCAGCTG
Statistics
Matches: 175, Mismatches: 36, Indels: 11
0.79 0.16 0.05
Matches are distributed among these distances:
157 2 0.01
158 93 0.53
159 79 0.45
160 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.26, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAA
CCAGTGAGAGAGGCAGAATGCGTAAGCCAAGGATCGACCCAGTCCCCCCTGCGTGCTGCCAATCA
CACTGCCACAACCCTCAATCTCGACTGA
Found at i:35335901 original size:159 final size:157
Alignment explanation
Indices: 35335492--35335893 Score: 407
Period size: 159 Copynumber: 2.5 Consensus size: 157
35335482 AACTCCGTAT
* * *
35335492 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCA-TCAG
* * * * *
35335557 CCAG-TTAGAGAGGCAGAATGCGTAAGCCAAGGATCGGCCCAGTCCCCCCTGCGTGTTGTCAATC
65 CCAGCTGA-AGAGGCAGAATGCGTAAGCTAAGGATCGACCCAGTCCCCCCTGCGTGCTGCCAATC
** * * *
35335621 ATGCTGCCGCAACCCTCAATCTGGTCTGA
129 ACACTGCCACAACCCTCAATCTCGACTGA
* * * * * * * *
35335650 TCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACAAGCGTGTGGGCGTTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGC-ATCA
* **
35335714 GCCAGCTGAAGAGGCATAATGCGTAAGCTAAGGATCGACCC-GATCCCCCTCTGCGTGCTGCCGG
64 GCCAGCTGAAGAGGCAGAATGCGTAAGCTAAGGATCGACCCAG-TCCCCC-CTGCGTGCTGCCAA
* * ** *
35335778 TCCCACTGCCATAACCCTCGGTC-CGACTGGG
127 TCACACTGCCACAACCCTCAATCTCGACT-GA
35335809 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTCATCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGG-CATCAG
** * *
35335874 CTGGCCGAAAAGGCAGAATG
65 CCAGCTGAAGAGGCAGAATG
35335894 AGCAAGCTGG
Statistics
Matches: 194, Mismatches: 42, Indels: 15
0.77 0.17 0.06
Matches are distributed among these distances:
157 2 0.01
158 93 0.48
159 97 0.50
160 2 0.01
ACGTcount: A:0.26, C:0.29, G:0.26, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCATCAGC
CAGCTGAAGAGGCAGAATGCGTAAGCTAAGGATCGACCCAGTCCCCCCTGCGTGCTGCCAATCAC
ACTGCCACAACCCTCAATCTCGACTGA
Found at i:35336442 original size:26 final size:26
Alignment explanation
Indices: 35336391--35336443 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
35336381 CTGGTCCGAT
* *
35336391 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
35336417 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
35336443 C
1 C
35336444 CTAAGTCAAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:35336564 original size:184 final size:183
Alignment explanation
Indices: 35336340--35336897 Score: 582
Period size: 184 Copynumber: 3.0 Consensus size: 183
35336330 TGGGCTCGAT
* * * *
35336340 CCCCCCTATGTGCTGTCGATCCTAATGTCACAACCCTCGGTCTGGTCCGATCTTAGACTGGGAAT
1 CCCCCCTACGTGCTGTCGATCCTACTATCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAAT
* * *
35336405 GAACTTCGTATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAAGCCATGAAACGAGCGTG
66 GAACTTCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTG
* *
35336470 CGGGCGCTCAACCAGTCAGAGAGGCAGAATGCACAAGCCAGGGATCGACCCGGT-
131 CGGGCGCTCAGCC-GTC-GAGAGGCAGAATGCACAAGCCAAGGATCGACCCGGTC
* * * *
35336524 CCCCCTTGCGTGCTGTCGATCCTACTATCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAAT
1 CCCCCCTACGTGCTGTCGATCCTACTATCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAAT
* * *
35336589 GAACTTCGCATGCTTAGACTAGGGATGAACTCCGTGTGCCTAAGTCAACCCATTAAACGAGCGTG
66 GAACTTCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTG
* * * * * *
35336654 CGGGCACTCAGCCGACTGGAGATGTAGAATGCACAAGCCAAGGATCGGCTCGGTC
131 CGGGCGCTCAGCCG--TCGAGAGGCAGAATGCACAAGCCAAGGATCGACCCGGTC
* * * **
35336709 CCCCCCTACGAGCTATCAATCCTACTGCTAGTCCTACTGCCACAACCCTCGGTCTGGTCTAATCT
1 CCCCCCTACGTGCTGTCGATCCTA---CTA----T-C-G---CAACCCTCGGTCTGGTCCGATCT
* * * *
35336774 TAGATTGGGAATGAAC-TCTATATGCTTAGAC-ACGGAATGAACTCCGTATGCCTAAGTCAATCC
54 TAGACTGGGAATGAACTTC-GTATGCTTAGACTA-GGGATGAACTCCGTATGCCTAAGTCAACCC
* * * * * *
35336837 ACGAAACGAGCGTCCGGGTGCTTAGCCGGTCGAAGAGGCAGAATACATAAGCCAAGGATCG
117 ATGAAACGAGCGTGCGGGCGCTCAGCC-GTCG-AGAGGCAGAATGCACAAGCCAAGGATCG
35336898 GCACGATCCC
Statistics
Matches: 307, Mismatches: 48, Indels: 25
0.81 0.13 0.07
Matches are distributed among these distances:
183 1 0.00
184 158 0.51
185 20 0.07
188 3 0.01
192 1 0.00
193 1 0.00
194 1 0.00
196 5 0.02
197 116 0.38
198 1 0.00
ACGTcount: A:0.25, C:0.28, G:0.25, T:0.22
Consensus pattern (183 bp):
CCCCCCTACGTGCTGTCGATCCTACTATCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAAT
GAACTTCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTG
CGGGCGCTCAGCCGTCGAGAGGCAGAATGCACAAGCCAAGGATCGACCCGGTC
Found at i:35336891 original size:197 final size:197
Alignment explanation
Indices: 35336555--35336909 Score: 455
Period size: 197 Copynumber: 1.8 Consensus size: 197
35336545 CTACTATCGT
* * *
35336555 AACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTTCGCATGCTTAGACTAGGGATGAACT
1 AACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTTCACATGCTTAGACTAGGAATGAACT
* ** * * * * *
35336620 CCGTGTGCCTAAGTCAACCCATTAAACGAGCGTGCGGGCACTCAGCCGACTGGAGATGTAGAATG
66 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTCCGGGCACTCAGCCGACTGAAGAGGCAGAATA
* *
35336685 CACAAGCCAAGGATCGGCTCGGTCCCCCCCTACGAGCTATCAATCCTACTGCTAGTCCTACTGCC
131 CACAAGCCAAGGATCGGCACGATCCCCCCCTACGAGCTATCAATCCTACTGCTAGTCCTACTGCC
35336750 AC
196 AC
* * * *
35336752 AACCCTCGGTCTGGTCTAATCTTAGATTGGGAATGAAC-TCTATATGCTTAGAC-ACGGAATGAA
1 AACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTTC-ACATGCTTAGACTA-GGAATGAA
* ** * *
35336815 CTCCGTATGCCTAAGTCAATCCACGAAACGAGCGTCCGGGTGCTTAGCCG-GTCGAAGAGGCAGA
64 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTCCGGGCACTCAGCCGACT-GAAGAGGCAGA
*
35336879 ATACATAAGCCAAGGATCGGCACGATCCCCC
128 ATACACAAGCCAAGGATCGGCACGATCCCCC
35336910 TCTGCATGCT
Statistics
Matches: 132, Mismatches: 23, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
196 4 0.03
197 128 0.97
ACGTcount: A:0.26, C:0.28, G:0.25, T:0.21
Consensus pattern (197 bp):
AACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTTCACATGCTTAGACTAGGAATGAACT
CCGTATGCCTAAGTCAACCCACGAAACGAGCGTCCGGGCACTCAGCCGACTGAAGAGGCAGAATA
CACAAGCCAAGGATCGGCACGATCCCCCCCTACGAGCTATCAATCCTACTGCTAGTCCTACTGCC
AC
Found at i:35338202 original size:26 final size:26
Alignment explanation
Indices: 35338165--35338215 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
35338155 CAATTCGATC
*
35338165 TTAGACTGGGAATGAACTCTGTATGT
1 TTAGACTGGGAATGAACTCTATATGT
*
35338191 TTAGACAT-GGAATGAATTCTATATG
1 TTAGAC-TGGGAATGAACTCTATATG
35338216 CCTAACCAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.31, C:0.10, G:0.24, T:0.35
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCTATATGT
Found at i:35341558 original size:184 final size:184
Alignment explanation
Indices: 35341213--35341569 Score: 457
Period size: 184 Copynumber: 1.9 Consensus size: 184
35341203 TAGACATGGA
* * * *
35341213 ATGAACTCCCTATGCTTAAGCCAACCCACGAAACGAGTGTGCGGGCACTCAACCGGCCAGAGAGG
1 ATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAACCGACCAGAGAGG
* * *
35341278 TAGAATGCGCAAGCCGGGGATCAGCCCGATCCCCCCAACGTGCTGTCGATCCTGCTGTCACAACC
66 CAGAATGCGCAAGCCGAGGATCAGCCCGATCCCCCCAACGTGCTGTCGATCCTGCTATCACAACC
* * *
35341343 CTCGGTCCTGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAAACTGGGG
131 CTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAAACTGGGG
* * * * * * * *
35341397 ATGAACTTCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCAGGCACTCAACCTATCGGAGAGG
1 ATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAACCGACCAGAGAGG
* * * * *
35341462 CAGAATGCGTAAGCCGAGGATC-GACTCGGTCCCCCTCTACGTGCTGTCGATCCTGCTATCGCAA
66 CAGAATGCGCAAGCCGAGGATCAG-CCCGATCCCCC-CAACGTGCTGTCGATCCTGCTATCACAA
* *
35341526 CCCTTGATCCAGTCCGATCTTAGACT-GGAATGAACTCCGTATGC
129 CCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCATATGC
35341570 CTAACTCAAC
Statistics
Matches: 146, Mismatches: 25, Indels: 4
0.83 0.14 0.02
Matches are distributed among these distances:
183 1 0.01
184 98 0.67
185 47 0.32
ACGTcount: A:0.25, C:0.30, G:0.25, T:0.21
Consensus pattern (184 bp):
ATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAACCGACCAGAGAGG
CAGAATGCGCAAGCCGAGGATCAGCCCGATCCCCCCAACGTGCTGTCGATCCTGCTATCACAACC
CTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAAACTGGGG
Done.