Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 390 of 402
Found at i:35341786 original size:159 final size:156
Alignment explanation
Indices: 35341397--35341834 Score: 436
Period size: 158 Copynumber: 2.8 Consensus size: 156
35341387 TAAACTGGGG
* ** * * *
35341397 ATGAACTTCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCAGGCACTCAACCTA-TCGGAGAG
1 ATGAACTCCGTATGCCTAAACCAACCCATGAAACGAGCGTGCGGGCACTC-AGC-AGTCGGAGAG
* * * * *
35341461 GCAGAATGCGTAAGCCGAGGATCGACTCGGTCCCCCTCTACGTGCTGTCGATCCTGCTATCGCAA
64 GCAGAATGCGCAAGCTG-GGATCGACTCGATCCCCCTCTACATGCTGTCGATCCTGCTATCACAA
* * *
35341526 CCCTTGATCCAGTCCGATCTTAGACTGGA
128 CCCTCGATCCAGTCAGAGCTTAGACTGGA
* * * * ** *
35341555 ATGAACTCCGTATGCCT-AACTCAACCCATGAAACGAGCGTACGGGCGCTGAGCTAGCCAAAGAA
1 ATGAACTCCGTATGCCTAAAC-CAACCCATGAAACGAGCGTGCGGGCACTCAGC-AGTCGGAGAG
* * * * *
35341619 GCATAATGCACAAGCTAGGGATCGTCTTGATCCCCCTTTACATGCTGTC-AGTCCTGCTATCACA
64 GCAGAATGCGCAAGCT-GGGATCGACTCGATCCCCCTCTACATGCTGTCGA-TCCTGCTATCACA
* * *
35341683 AGCCTCGATCC-GGCTAGGGCTTAGACATGGA
127 ACCCTCGATCCAGTC-AGAGCTTAGAC-TGGA
* *
35341714 ATGAACTCCGTATGTCTAAACCAACCCATGAAACGAGCGTGCGGGCACTCAGTCGGTCGGAGAGG
1 ATGAACTCCGTATGCCTAAACCAACCCATGAAACGAGCGTGCGGGCACTCAG-CAGTCGGAGAGG
* * *
35341779 CAGAATGCGCAAGCTGGCGATCGACCCGATCCCCC-CTGCGTGCTGTCGATCCTGCT
65 CAGAATGCGCAAGCTGG-GATCGACTCGATCCCCCTCTACATGCTGTCGATCCTGCT
35341835 GTCGTAACCC
Statistics
Matches: 224, Mismatches: 46, Indels: 20
0.77 0.16 0.07
Matches are distributed among these distances:
157 8 0.04
158 129 0.58
159 83 0.37
160 4 0.02
ACGTcount: A:0.25, C:0.29, G:0.25, T:0.21
Consensus pattern (156 bp):
ATGAACTCCGTATGCCTAAACCAACCCATGAAACGAGCGTGCGGGCACTCAGCAGTCGGAGAGGC
AGAATGCGCAAGCTGGGATCGACTCGATCCCCCTCTACATGCTGTCGATCCTGCTATCACAACCC
TCGATCCAGTCAGAGCTTAGACTGGA
Found at i:35341832 original size:501 final size:501
Alignment explanation
Indices: 35340815--35342808 Score: 1885
Period size: 501 Copynumber: 4.0 Consensus size: 501
35340805 TCCTCATTAT
* * * * **
35340815 GTGCTGTCGATCCTACTGCCGCAACTCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGT
1 GTGCTGTCGATCCTGCTGTCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCAT
** ** *
35340880 ATGCTTAGACATCTAATGAACTTTGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTC
66 ATGCTTAGACATGGAATGAACTTCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTC
* * * *
35340945 AACCGACCGGAGAGGCAGAATGCCCAAGCCGAGGA-CTGAC-CTGGTCCCCCCCGACGTGCTATC
131 AACC-ACCGGAGAGGCAGAATGCGCAAGCCGAGGATCAGACTC-GGT-CCCCCCTACGTGCTGTC
* * * * *
35341008 GATCCTACTATC-GTAACCCTCGGTTCGATCCGATCATAGACTAGGAATGAACTCCGTATGCCTA
193 AATCCTACTA-CAGCAACCCTTGATCCGATCCGATCATAGACTAGGAATGAACTCCGTATGCCTA
** * * * * * * *
35341072 AGTCAACCCGCGAACCGAGCATTCGGGCACTGAACCGATCGAA-AAGCCATAATACGCAAGCCGG
257 AGTCAACCCATGAAACGAGCGTACGGGCACTGAGCCGACCGAAGAAG-CATAATGCGCAAGCCAG
* * * * * * * * *
35341136 GGATCGGT-CTGGTCCCCCTCTACGTGCTGCCATTCCCGCTACCACAACCATCGGTCCGACTGGG
321 GGATCAGTCCCGATCCCCCTCTACATGCTGTCAGTCCCGCTACCACAACCCTCGATCCGGCTGGG
* *
35341200 GCTTAGACATGGAATGAACTCCCTATGCTTAAGCCAACCCACGAAACGAGTGTGCGGGCACTCAA
386 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAA
* * * **
35341265 CCGGCCAGAGAGGTAGAATGCGCAAGCCGGGGATC-AGCCCGATCCCCCCAAC
451 CCGGCCGGAGAGGCAGAATGCGCAAG-CAGGGATCGA-CCCGATCCCCCCTGC
* *
35341317 GTGCTGTCGATCCTGCTGTCACAACCCTCGGTCCTGTCTGATCTTAGACTGGGAATGAACTCCAT
1 GTGCTGTCGATCCTGCTGTCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCAT
* * * * * * * *
35341382 ATGCTTAAAC-TGGGGATGAACTTCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCAGGCACT
66 ATGCTTAGACAT-GGAATGAACTTCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCT
* *
35341446 CAACCTATCGGAGAGGCAGAATGCGTAAGCCGAGGATC-GACTCGGTCCCCCTCTACGTGCTGTC
130 CAACC-ACCGGAGAGGCAGAATGCGCAAGCCGAGGATCAGACTCGGTCCCCC-CTACGTGCTGTC
* * *
35341510 GATCCTGCTATC-GCAACCCTTGATCC-AGTCCGATCTTAGACT-GGAATGAACTCCGTATGCCT
193 AATCCTACTA-CAGCAACCCTTGATCCGA-TCCGATCATAGACTAGGAATGAACTCCGTATGCCT
* * * * * *
35341572 AACTCAACCCATGAAACGAGCGTACGGGCGCTGAG-CTAGCCAAAGAAGCATAATGCACAAGCTA
256 AAGTCAACCCATGAAACGAGCGTACGGGCACTGAGCCGA-CCGAAGAAGCATAATGCGCAAGCCA
** * * * * *
35341636 GGGATC-GTCTTGATCCCCCTTTACATGCTGTCAGTCCTGCTATCACAAGCCTCGATCCGGCTAG
320 GGGATCAGTCCCGATCCCCCTCTACATGCTGTCAGTCCCGCTACCACAACCCTCGATCCGGCTGG
* * * *
35341700 GGCTTAGACATGGAATGAACTCCGTATGTCTAAACCAACCCATGAAACGAGCGTGCGGGCACTCA
385 GGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCA
** * *
35341765 GTCGGTCGGAGAGGCAGAATGCGCAAGCTGGCGATCGACCCGATCCCCCCTGC
450 ACCGGCCGGAGAGGCAGAATGCGCAAGCAGG-GATCGACCCGATCCCCCCTGC
* * ** * **
35341818 GTGCTGTCGATCCTGCTGTCGTAACCCTCTGTCCAATCTGATCCTAGACTTTGAATGAACTCCAT
1 GTGCTGTCGATCCTGCTGTCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCAT
* * ** * * *
35341883 ATTCTTAGACATGGAATGAACTGCATATGTTTAAGCCAACCCACGAAACGAGTGTACGGGCGCTT
66 ATGCTTAGACATGGAATGAACTTCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTC
* * * * * * * * **
35341948 AGCCAGCCAGAGAGGCAGAACGTGCAAGCC-AGGGA-CCGGCCCGATCCCCCCCCCGCCTGCTGT
131 AACCA-CCGGAGAGGCAGAATGCGCAAGCCGA-GGATCAGACTCGGTCCCCCCTACG--TGCTGT
* * * * *
35342011 CAATCCTGCTACTGCAACCC-TCAGTCCGATCCGATCATAGATTGGGAATGAACTCCGTATGCCT
192 CAATCCTACTACAGCAACCCTTGA-TCCGATCCGATCATAGACTAGGAATGAACTCCGTATGCCT
* * *
35342075 AAGTCAACCCATGAAACGAGCGTACGGGCACT-ATGCCGATCGGAGAGGCATAATGCGCAAGCCA
256 AAGTCAACCCATGAAACGAGCGTACGGGCACTGA-GCCGACCGAAGAAGCATAATGCGCAAGCCA
* * * * * * *** *
35342139 AGGATCAG-CCCGATCCCCTTCTGCGTTCTGTCGGTCCCGCTGTGACAACCCTC-AGTCCGGTTG
320 GGGATCAGTCCCGATCCCCCTCTACATGCTGTCAGTCCCGCTACCACAACCCTCGA-TCCGGCTG
* * * * * *
35342202 GGGTTTAGACACGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAATGGGGGTGCGGGCACTC
384 GGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTC
** * *
35342267 AACCGGCCGGAGAGGCAGAATAAGTAAGGCAGGGATCGGCCCGATCCCCCCTGC
449 AACCGGCCGGAGAGGCAGAATGCGCAA-GCAGGGATCGACCCGATCCCCCCTGC
* *
35342321 GTGCTGCCGATCCTGCTTCTGGTCCTGTTGCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGG
1 GTGCTGTCGA---T-C--CT-G--CTG-T--CGCAACCCTCGGTCCGGTCTGATCTTAGACTGGG
** * * * * * *
35342386 AATGAACTCTGTATCCTTAGACATGGAATGAAATTCATACGCCTAAGCCCACCTATGAAA-GAAG
54 AATGAACTCCATATGCTTAGACATGGAATGAACTTCATATGCCTAAGCCAACCCACGAAACG-AG
* * * * *
35342450 CGTGCGGGCGCTCAGCCAATCGGAGAGGCAGAATGTGCAAGCCGAGGATCAGCCT-GGTGCCCCC
118 CGTGCGGGCGCTCAACC-ACCGGAGAGGCAGAATGCGCAAGCCGAGGATCAGACTCGGTCCCCCC
* * * * * * *
35342514 TGCATGTTGTTAATCCTACTACAACAACCCTTGATCCAATCCGATCTTAGACTAGGAATGAACTC
182 TACGTGCTGTCAATCCTACTACAGCAACCCTTGATCCGATCCGATCATAGACTAGGAATGAACTC
* * * * * *
35342579 CATATGCCTAAGTCAACTCATGAAACGAGCGTGCGGGCGCTGAGCCGACCGGAGAGGCATAATGC
247 CGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCACTGAGCCGACCGAAGAAGCATAATGC
* * * * * *
35342644 GCAAGCCGGGGATC-GACCCGGTCCCCCTCTACATGCTGTC-GATCCCGCTACCATAACCCTAGG
312 GCAAGCCAGGGATCAGTCCCGATCCCCCTCTACATGCTGTCAG-TCCCGCTACCACAACCCTCGA
* * * * *
35342707 TCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGTCGACCCATGAAAC-ACACGTG
376 TCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGA-GCGTG
* * ** *
35342771 TGGGCACTCAGCCGATCGGAGAGGTAGAATGCGCAAGC
440 CGGGCACTCAACCGGCCGGAGAGGCAGAATGCGCAAGC
35342809 CGGGGATCAG
Statistics
Matches: 1210, Mismatches: 235, Indels: 84
0.79 0.15 0.05
Matches are distributed among these distances:
500 13 0.01
501 358 0.30
502 235 0.19
503 222 0.18
504 7 0.01
506 1 0.00
507 1 0.00
509 2 0.00
510 1 0.00
512 7 0.01
513 231 0.19
514 4 0.00
515 123 0.10
516 5 0.00
ACGTcount: A:0.25, C:0.30, G:0.25, T:0.20
Consensus pattern (501 bp):
GTGCTGTCGATCCTGCTGTCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCAT
ATGCTTAGACATGGAATGAACTTCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTC
AACCACCGGAGAGGCAGAATGCGCAAGCCGAGGATCAGACTCGGTCCCCCCTACGTGCTGTCAAT
CCTACTACAGCAACCCTTGATCCGATCCGATCATAGACTAGGAATGAACTCCGTATGCCTAAGTC
AACCCATGAAACGAGCGTACGGGCACTGAGCCGACCGAAGAAGCATAATGCGCAAGCCAGGGATC
AGTCCCGATCCCCCTCTACATGCTGTCAGTCCCGCTACCACAACCCTCGATCCGGCTGGGGCTTA
GACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAACCGGC
CGGAGAGGCAGAATGCGCAAGCAGGGATCGACCCGATCCCCCCTGC
Found at i:35342761 original size:159 final size:160
Alignment explanation
Indices: 35342401--35343186 Score: 587
Period size: 159 Copynumber: 4.9 Consensus size: 160
35342391 ACTCTGTATC
* * * * * *
35342401 CTTAGACATGGAATGAAATTCATACGCCTAAGCCCACCTATGAAA-GAAGCGTGCGGGCGCTCAG
1 CTTAGACATGGAATGAACTCCATATGCCTAAGTCAACCCATGAAACG-AGCGTGCGGGCGCTCAG
* * * * * * **
35342465 CCAATCGGAGAGGCAGAATGTGCAAGCCGAGGATC-AGCCTGGTGCCCC-CTGCATGTTGTTAAT
65 CCGATCGGAGAGGCAGAATGCGCAAGCCGAGGATCGA-CCCGGTCCCCCTCTGCGTGCTGTCGAT
* * * *
35342528 CCTACTACAACAACCCT-TGATCCA-ATCCGAT
129 CCTGCTACCACAACCCTCAG-TCCAGATCCGAG
* *
35342559 CTTAGAC-TAGGAATGAACTCCATATGCCTAAGTCAACTCATGAAACGAGCGTGCGGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * *
35342623 CCGACCGGAGAGGCATAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTCTACATGCTGTCGATC
65 CCGATCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCCCCTCTGCGTGCTGTCGATC
* * * * *
35342688 CCGCTACCATAACCCT-AGGTCCAGCT-GGGG
130 CTGCTACCACAACCCTCA-GTCCAGATCCGAG
* * * * *
35342718 CTTAGACATGGAATGAACTCCCTATGCCTAAGTCGACCCATGAAAC-ACACGTGTGGGCACTCAG
1 CTTAGACATGGAATGAACTCCATATGCCTAAGTCAACCCATGAAACGA-GCGTGCGGGCGCTCAG
* * * * ** * * *
35342782 CCGATCGGAGAGGTAGAATGCGCAAGCCGGGGATC-AGCTCGGTCCCTCTCTATGCGCTATCAAT
65 CCGATCGGAGAGGCAGAATGCGCAAGCCGAGGATCGA-CCCGGTCCCCCTCTGCGTGCTGTCGAT
* * *
35342846 CCTGCTACCGCAACACCCTCAGTCC-GGTCCGAT
129 CCTGCTACCAC-A-ACCCTCAGTCCAGATCCGAG
* * * * * * *
35342879 CTTAGAC-TAGGAATGAAATCCGTATGCCTAAGTCAACCCATGAAATGAGTGTACGGGTGCTGAG
1 CTTAGACAT-GGAATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* ** * * * * * * * * *
35342943 CCGATCGAAGACACATAACGCACAAGCCAAGGATTGGCTCTGTCCCCCTCTGCGTGCTGTCGGTC
65 CCGATCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCCCCTCTGCGTGCTGTCGATC
* * * * * *
35343008 CTGTTGCCACAACCTTCAGTCCGGAT-GGGG
130 CTGCTACCACAACCCTCAGTCCAGATCCGAG
* * * * * * *
35343038 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAACCATGAAATGGGCGTGCGGGTGCTCAGT
1 CTTAGACATGGAATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
35343103 C-AGCCAGAGAGGTAGAATGCGCAAGCC-AGGATTCGACCTGGTCCCCC-CTGCGTGCTGCCGAT
66 CGA-TCGGAGAGGCAGAATGCGCAAGCCGAGGA-TCGACCCGGTCCCCCTCTGCGTGCTGTCGAT
*
35343165 CCTGCTACCGCAACCCTCAGTC
129 CCTGCTACCACAACCCTCAGTC
35343187 TGATTCAATC
Statistics
Matches: 489, Mismatches: 119, Indels: 40
0.75 0.18 0.06
Matches are distributed among these distances:
157 1 0.00
158 129 0.26
159 235 0.48
160 11 0.02
161 111 0.23
162 2 0.00
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.20
Consensus pattern (160 bp):
CTTAGACATGGAATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
CGATCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCCCCTCTGCGTGCTGTCGATCC
TGCTACCACAACCCTCAGTCCAGATCCGAG
Found at i:35345611 original size:26 final size:26
Alignment explanation
Indices: 35345566--35345618 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
35345556 CCGATCTGAT
*
35345566 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
35345592 CTTAGACTGGGGAT-ATACTCCATATG
1 CTTAGACTGGGAATGA-ACTCCATATG
35345618 C
1 C
35345619 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:35347183 original size:26 final size:26
Alignment explanation
Indices: 35347154--35347206 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35347144 TCGGTCTGAT
*
35347154 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
35347180 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
35347206 C
1 C
35347207 CTAGGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:35348238 original size:159 final size:158
Alignment explanation
Indices: 35347887--35348329 Score: 415
Period size: 159 Copynumber: 2.8 Consensus size: 158
35347877 GGTTACACAT
* * * * * * * *
35347887 GGAATGAACTCCATATGCCTAACCCAACCCATGAAATGAGCGTGCGGGCACTCAGTCGATCGGAG
1 GGAATGAACTTCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAGCCAACCAGAG
* * * *
35347952 AGGCAAAATGCGCAAGCCGGGGATCAGCCCGATCCCCCCTGCGTGTTGTCGATCCTGTTGCCACA
66 AGGCAAAATGCGCAAGCCGGGGATCAACCCGATCCCCCCTGCGTGCTGTCGATCCCGCTGCCACA
* **
35348017 ACCCTCTATCCGGTCCGATCTTAGACTG
131 ACCCTCTATCCGCTCCGATCTTAGACAA
* * * * **
35348045 GGAATTAAC-TCTGTATGCCTAAGTCAACCCACGAAATGGGCGTGTGGGCACTGTGCCAACCAGA
1 GGAATGAACTTC-GTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAGCCAACCAGA
* * * * **
35348109 GAGGCATAATGCGCAAGCCGGGGATCAACCTGATCCCCCTTTGCGTGCTGTCGGTCCCGCTGTGA
65 GAGGCAAAATGCGCAAGCCGGGGATCAACCCGATCCCCC-CTGCGTGCTGTCGATCCCGCTGCCA
**
35348174 CAACCCTC-AGTCCAGCTTGGA-CTTAGACAA
129 CAACCCTCTA-TCC-GCTCCGATCTTAGACAA
* * *** * ** *
35348204 GGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGATGCTCAACCGGCAAGAG
1 GGAATGAACTTCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAGCCAACCAGAG
* * * ** * * *
35348269 AGGTAGAATGCGCAAGCCGAGGATCGGCCCAATCCCCCCTACGTGCTGTCGATCCTGCTGC
66 AGGCAAAATGCGCAAGCCGGGGATCAACCCGATCCCCCCTGCGTGCTGTCGATCCCGCTGC
35348330 TGGTCTTGTT
Statistics
Matches: 224, Mismatches: 56, Indels: 10
0.77 0.19 0.03
Matches are distributed among these distances:
157 1 0.00
158 103 0.46
159 114 0.51
160 6 0.03
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.19
Consensus pattern (158 bp):
GGAATGAACTTCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAGCCAACCAGAG
AGGCAAAATGCGCAAGCCGGGGATCAACCCGATCCCCCCTGCGTGCTGTCGATCCCGCTGCCACA
ACCCTCTATCCGCTCCGATCTTAGACAA
Found at i:35348403 original size:26 final size:26
Alignment explanation
Indices: 35348365--35348417 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35348355 TCGGTCTGAT
35348365 CTTAGACTGGGAATGAACTCAGTATG
1 CTTAGACTGGGAATGAACTCAGTATG
*
35348391 CTTAGA-TGTGGAATGAACTCCGTATG
1 CTTAGACTG-GGAATGAACTCAGTATG
35348417 C
1 C
35348418 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 2 0.08
26 23 0.92
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCAGTATG
Found at i:35348564 original size:697 final size:693
Alignment explanation
Indices: 35347145--35348575 Score: 1483
Period size: 697 Copynumber: 2.1 Consensus size: 693
35347135 ACCCTCGTTT
* * * *
35347145 CGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCCGTATGCCTA
1 CGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCTTACACATGGAATGAACTCCATATGCCTA
** * * * *
35347210 GGCCAACCCATGAAACGAGCGTACGAGCGATCAGTCGGTCGAAGAGGCATAATGTGCAAGCTGGG
66 ACCCAACCCATGAAACGAGCGTACGAGCGATCAGTCGATCGAAGAGGCAAAATGCGCAAGCCGGG
* * * * *
35347275 GATCGGCCCAATCCCTCTCTACGTGCTATCAATCCTACTACCCCAACCCTCGGTACGATTCAATC
131 GATCAGCCCAATCCCTCCCTACGTGCTATCAATCCTACTACCACAACCCTCGATACGATCCAATC
* **
35347340 TTAGACTGGGAATGAACTCTGTATGCCTAAGTTAACCCACAAAATGAGCGTGTGGGTGCTGAGCC
196 TTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACAAAATGAGCGTGTGGGCACTGAGCC
** ** * * *
35347405 GGCTGGAGAGGCATAATGCGCAAGCTGGGGACCGACCCAGTCCCCCTCTGCATACTGTCGGTCTC
261 AACCAGAGAGGCATAATGCGCAAGCCGGGGACCAACCCAGTCCCCCTCTGCATACTGTCGGTCCC
** * *
35347470 ACTGGCACAACCCTCAGTCTGGCTGGGGCATAAACATGGAATGAACTCCCTATGCCTAAGCCAAC
326 ACTGGCACAACCCTCAGTCCAGCTGGGACATAAACAAGGAATGAACTCCCTATGCCTAAGCCAAC
* * * * * * * *
35347535 CCACAAAATGGGCGTGCGGGCACTCAGCCGACCAGAGAGGTAGAATGTACAAGCCGGGGATCGAC
391 CCACAAAACGAGCGTACGGACACTCAACCGACAAGAGAGGTAGAATGCACAAGCCGAGGATCGAC
* * * * *
35347600 TCGATCGCCCCTACGTGCTGCCGATCTTGCTACCTCAACCTTCGATCCGATTTGATCTTAGACTG
456 CCAATCCCCCCTACGTGCTGCCGATCTTGCTACCTCAACCCTCGATCCGATCTGATCTTAGACTG
* **
35347665 GAAATGAACTCCATATGCTTAGACTAGGGATGAACTCCTTATGCCTAATTCAACCCACAAAACGA
521 GAAATGAACTCCATATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGCCAACCCACAAAACGA
* * ** * * *
35347730 ATGTGCGGGTGCTCAACCGGTCGGAGAGGTAGAATCCGTAAGCCGGGGATCGGCCTGGTCCACCC
586 ACGTGCGGGAGCTCAACCGACCGAAGAGGTAGAATCCGTAAGCCAGGGATCGGCCTGATCCACCC
* * *
35347795 CTATGTACAGTCGATCCTGCTGCTGGTCCCGCTACTGCAAACCTCAGTT
651 CTACGCACAGTCGATCCT-CTGC--GT--CGC-ACTGCAAACCTCAGTC
* * * * *
35347844 TGGTCCGATCTTAG-GTTGGAATGAACTCCGTATGGTTACACATGGAATGAACTCCATATGCCTA
1 CGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCTTACACATGGAATGAACTCCATATGCCTA
* * * *
35347908 ACCCAACCCATGAAATGAGCGTGCGGGC-ACTCAGTCGATCGGAGAGGCAAAATGCGCAAGCCGG
66 ACCCAACCCATGAAACGAGCGTACGAGCGA-TCAGTCGATCGAAGAGGCAAAATGCGCAAGCCGG
* * * * * ** * * * * *
35347972 GGATCAGCCCGATCCC-CCCTGCGTGTTGTCGATCCTGTTGCCACAACCCTCTATCCGGTCCGAT
130 GGATCAGCCCAATCCCTCCCTACGTGCTATCAATCCTACTACCACAACCCTCGATACGATCCAAT
* * * *
35348036 CTTAGACTGGGAATTAACTCTGTATGCCTAAGTCAACCCACGAAATGGGCGTGTGGGCACTGTGC
195 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACAAAATGAGCGTGTGGGCACTGAGC
* * * * *
35348101 CAACCAGAGAGGCATAATGCGCAAGCCGGGGATCAA-CCTGATCCCCCTTTGCGTGCTGTCGGTC
260 CAACCAGAGAGGCATAATGCGCAAGCCGGGGACCAACCCAG-TCCCCCTCTGCATACTGTCGGTC
* * * * * *
35348165 CCGCTGTG-ACAACCCTCAGTCCAGCTTGGACTTAGACAAGGAATGAACTTCGTATGCCTAAGCC
324 CCACTG-GCACAACCCTCAGTCCAGCTGGGACATAAACAAGGAATGAACTCCCTATGCCTAAGCC
* ** * *
35348229 AACCCACGAAACGAGCGTACGGATGCTCAACCGGCAAGAGAGGTAGAATGCGCAAGCCGAGGATC
388 AACCCACAAAACGAGCGTACGGACACTCAACCGACAAGAGAGGTAGAATGCACAAGCCGAGGATC
* * * * * * *
35348294 GGCCCAATCCCCCCTACGTGCTGTCGATCCTGCTGCTGGTCTTGTTGTCGTAACCCTCGGTTCGG
453 GACCCAATCCCCCCTACGTGCTGCCGAT-CT--TGCT--AC-----CTC--AACCCTCGATCCGA
*
35348359 TCTGATCTTAGACTGGGAATGAACT-CAGTATGCTTAGA-T-GTGGAATGAACTCCGTATGCCTA
506 TCTGATCTTAGACTGGAAATGAACTCCA-TATGCTTAGACTAG-GG-ATGAACTCCGTATGCCTA
* * * * *
35348421 AGCCAACTCACAAAACGAGCGTGCGGGAGCTCAGCCGACCGAAGAGGTAGAATGCGTAAGTCAGG
568 AGCCAACCCACAAAACGAACGTGCGGGAGCTCAACCGACCGAAGAGGTAGAATCCGTAAGCCAGG
* * * **
35348486 GATCTG-CTCGATCC-CCCCTACGCCCTA-TCGAT-CT-TGC-T-G-AC-GCAACCCTTGGTC
633 GATCGGCCT-GATCCACCCCTACGCAC-AGTCGATCCTCTGCGTCGCACTGCAAACCTCAGTC
35348540 CGGTCTGATCTTAGACTAGGAATGAACTCCGTATGC
1 CGGTCTGATCTTAGACTAGGAATGAACTCCGTATGC
35348576 ATAAGTCAAC
Statistics
Matches: 593, Mismatches: 118, Indels: 44
0.79 0.16 0.06
Matches are distributed among these distances:
696 24 0.04
697 287 0.48
698 113 0.19
699 13 0.02
700 4 0.01
702 2 0.00
705 3 0.01
707 5 0.01
708 20 0.03
709 122 0.21
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.22
Consensus pattern (693 bp):
CGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCTTACACATGGAATGAACTCCATATGCCTA
ACCCAACCCATGAAACGAGCGTACGAGCGATCAGTCGATCGAAGAGGCAAAATGCGCAAGCCGGG
GATCAGCCCAATCCCTCCCTACGTGCTATCAATCCTACTACCACAACCCTCGATACGATCCAATC
TTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACAAAATGAGCGTGTGGGCACTGAGCC
AACCAGAGAGGCATAATGCGCAAGCCGGGGACCAACCCAGTCCCCCTCTGCATACTGTCGGTCCC
ACTGGCACAACCCTCAGTCCAGCTGGGACATAAACAAGGAATGAACTCCCTATGCCTAAGCCAAC
CCACAAAACGAGCGTACGGACACTCAACCGACAAGAGAGGTAGAATGCACAAGCCGAGGATCGAC
CCAATCCCCCCTACGTGCTGCCGATCTTGCTACCTCAACCCTCGATCCGATCTGATCTTAGACTG
GAAATGAACTCCATATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGCCAACCCACAAAACGA
ACGTGCGGGAGCTCAACCGACCGAAGAGGTAGAATCCGTAAGCCAGGGATCGGCCTGATCCACCC
CTACGCACAGTCGATCCTCTGCGTCGCACTGCAAACCTCAGTC
Found at i:35348659 original size:513 final size:511
Alignment explanation
Indices: 35347682--35348841 Score: 1203
Period size: 513 Copynumber: 2.3 Consensus size: 511
35347672 ACTCCATATG
* * * ** * **
35347682 CTTAGACTAGGGATGAACTCCTTATGCCTAATTCAACCCACAAAACGAATGTGCGGGTGCTCAAC
1 CTTAGACAAGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAAC
* * * * * * *
35347747 CGGTCGGAGAGGTAGAATCCGTAAGCCGGGGATCGGCCTGGTCCACCCCTATGTACAGTCGATCC
66 CGG-CGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGATCC-CCCCTACGTGCTGTCGATCC
* * * *
35347812 TGCTGCTGGTCCCGCTACTGCAAACCTCAGTTTGGTCCGATCTTAGGTTGGAATGAACTCCGTAT
129 TGCTGCTGGTCCCGCTACTGCAAACCTCAGTTCGGTCCGATCTTAGCTGGGAATGAACTCAGTAT
* ** *
35347877 GGTTACACATGGAATGAACTCCATATGCCTAACCCAACCCATGAAATGAGCGTGCGGGCACTCAG
194 GCTTACACATGGAATGAACTCCATATGCCTAACCCAACCCACAAAACGAGCGTGCGGGCACTCAG
* * * * * *** *
35347942 TCGATCGGAGAGGCAAAATGCGCAAGCCGGGGATCAGCCCGATCCCCCCTGCGTGTTGTCGATCC
259 CCGACCGAAGAGGCAAAATGCGCAAGCCAGGGATCAGCCCGATCCCCCCTACGCCCTATCGATCC
* * * * * *
35348007 TGTTGCCACAACCCTCTATCCGGTCCGATCTTAGACTGGGAATTAACTCTGTATGCCTAAGTCAA
324 TGCTGACACAACCCTCTATCCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCATAAGTCAA
* * * ** * * *
35348072 CCCACGAAATGGGCGTGTGGGCACTGTGCCAACCAGAGAGGCATAATGCGCAAGCCGGGGATCAA
389 CCCACGAAACGAGCGTGCGGGCACTAAGCCAACCAGAGAGGCATAATACACAAGCCGAGGATCAA
* * ** ** *
35348137 CCTGATCCCCCTTTGCGTGCTGTCGGTCCCGCTGTGACAACCCTCAGTCCAGCTTGGA
454 CCCGATCCCCCTCTGCGTGCTACCGGTCCCGCTGCCACAACCCTCAGTCCAGCTGGGA
* * * *
35348195 CTTAGACAAGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGATGCTCAAC
1 CTTAGACAAGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAAC
* * *
35348260 CGGCAAGAGAGGTAGAATGCGCAAGCCGAGGATCGGCCCAATCCCCCCTACGTGCTGTCGATCCT
66 CGGC-GGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTACGTGCTGTCGATCCT
** ** * * * *
35348325 GCTGCTGGTCTTG-TTGTCGTAACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTCAGTA
130 GCTGCTGGTCCCGCTACT-GCAAACCTCAGTTCGGTCCGATCTTAG-CTGGGAATGAACTCAGTA
* ** * * *
35348389 TGCTTAGATGTGGAATGAACTCCGTATGCCTAAGCCAACTCACAAAACGAGCGTGCGGG-AGCTC
193 TGCTTACACATGGAATGAACTCCATATGCCTAACCCAACCCACAAAACGAGCGTGCGGGCA-CTC
* * * * * *
35348453 AGCCGACCGAAGAGGTAGAATGCGTAAGTCAGGGATCTGCTCGATCCCCCCTACGCCCTATCGAT
257 AGCCGACCGAAGAGGCAAAATGCGCAAGCCAGGGATCAGCCCGATCCCCCCTACGCCCTATCGAT
* * * *
35348518 CTTGCTGACGCAACCCT-TGGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCATAAGT
322 CCTGCTGACACAACCCTCT-ATCCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCATAAGT
* *** * * *
35348582 CAACCCACGAAACGAGTGTGCGGGCACTAAGCCGGTC-GAAGAGGCATGATACACAAGTCGATGA
386 CAACCCACGAAACGAGCGTGCGGGCACTAAGCCAACCAG-AGAGGCATAATACACAAGCCGAGGA
** * ** * *
35348646 TCGGCCCGATCCCCGTCTGCGTGCTACCGGTCCCGCTGCCACAACCCTTGGTCTAGCTGGGG
450 TCAACCCGATCCCCCTCTGCGTGCTACCGGTCCCGCTGCCACAACCCTCAGTCCAGCTGGGA
* * * * * *
35348708 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCGCTCAGC
1 CTTAGACAAGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAAC
* * * * * * * *
35348773 CGGTTGGAAAGGCAGAATGCGCAAGTCGGGGATCAGCCCGATCCCACCTGCGTGCTGTTGATCCT
66 CGG-CGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTACGTGCTGTCGATCCT
35348838 GCTG
130 GCTG
35348842 TCGCAATACT
Statistics
Matches: 522, Mismatches: 118, Indels: 14
0.80 0.18 0.02
Matches are distributed among these distances:
511 2 0.00
512 55 0.11
513 465 0.89
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.21
Consensus pattern (511 bp):
CTTAGACAAGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAAC
CGGCGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTACGTGCTGTCGATCCTG
CTGCTGGTCCCGCTACTGCAAACCTCAGTTCGGTCCGATCTTAGCTGGGAATGAACTCAGTATGC
TTACACATGGAATGAACTCCATATGCCTAACCCAACCCACAAAACGAGCGTGCGGGCACTCAGCC
GACCGAAGAGGCAAAATGCGCAAGCCAGGGATCAGCCCGATCCCCCCTACGCCCTATCGATCCTG
CTGACACAACCCTCTATCCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCATAAGTCAACC
CACGAAACGAGCGTGCGGGCACTAAGCCAACCAGAGAGGCATAATACACAAGCCGAGGATCAACC
CGATCCCCCTCTGCGTGCTACCGGTCCCGCTGCCACAACCCTCAGTCCAGCTGGGA
Found at i:35348817 original size:159 final size:157
Alignment explanation
Indices: 35348390--35348817 Score: 412
Period size: 159 Copynumber: 2.7 Consensus size: 157
35348380 AACTCAGTAT
* * * *
35348390 GCTTAGATGTGGAATGAACTCCGTATGCCTAAGCCAACTCACAAAACGAGCGTGCGGGAGCTCAG
1 GCTTAGA-CTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
** * * * * * * *
35348455 CCGACCGAAGAGGTAGAATGCGTAAGTCAGGGATCTGCTCGATCCCCCCTACGCCCTATCGATCT
65 CCGGTCGAAGAGGCAGAATGCGCAAGTCGGGGATCAGCCCGATCCCCCCTACGCCCTACCGATCC
* * *
35348520 TGCTGACGCAACCCTTGGTCCGGTCTGA
130 CGCTGACACAACCCTTGGTCCAGTCTGA
* * * * * *
35348548 TCTTAGACTAGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGTGTGCGGGCACTAAG
1 GCTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * ** * * * ** *
35348613 CCGGTCGAAGAGGCATG-ATACACAAGTCGATGATCGGCCCGATCCCCGTCTGCGTGCTACCGGT
65 CCGGTCGAAGAGGCA-GAATGCGCAAGTCGGGGATCAGCCCGATCCCC-CCTACGCCCTACCGAT
* * *
35348677 CCCGCTGCCACAACCCTTGGTCTAG-CTGGG
128 CCCGCTGACACAACCCTTGGTCCAGTCT-GA
* * * *
35348707 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCGCTCAG
1 GCTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
*
35348772 CCGGTTGGAA-AGGCAGAATGCGCAAGTCGGGGATCAGCCCGATCCC
65 CCGG-TCGAAGAGGCAGAATGCGCAAGTCGGGGATCAGCCCGATCCC
35348818 ACCTGCGTGC
Statistics
Matches: 213, Mismatches: 50, Indels: 13
0.77 0.18 0.05
Matches are distributed among these distances:
157 1 0.00
158 90 0.42
159 117 0.55
160 5 0.02
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.19
Consensus pattern (157 bp):
GCTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGTCGAAGAGGCAGAATGCGCAAGTCGGGGATCAGCCCGATCCCCCCTACGCCCTACCGATCCC
GCTGACACAACCCTTGGTCCAGTCTGA
Found at i:35349970 original size:26 final size:26
Alignment explanation
Indices: 35349929--35349979 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
35349919 TTGATTCAAT
35349929 CTTAGACTGGCAATGAACTCCGTATA
1 CTTAGACTGGCAATGAACTCCGTATA
**
35349955 CTTAGACTGGGGATGAACTCCGTAT
1 CTTAGACTGGCAATGAACTCCGTAT
35349980 GCGTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.22, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCGTATA
Found at i:35350613 original size:158 final size:159
Alignment explanation
Indices: 35350085--35350618 Score: 455
Period size: 158 Copynumber: 3.4 Consensus size: 159
35350075 CTGCTGATAC
* * *
35350085 TGCTGTTGGTCCTGCTACCATAACCCTCTG-TCC-GATCTGATCTTAGGCTGGGAATGAACTCCG
1 TGCTGTTGATCCTGCTACCATAACCCTC-GATCCAGATCTGATCTTAGACTGGGAATGAACTCCA
* * * * ** *
35350148 TATGCCTAAGCCAACCCACAAAATGAACGTGCGGGTACACAGCTAGCCGGAGAGGCAGAATGC-A
65 TATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGTGCTCAGCCGGCCGGAGAGGTAGAATGCGA
* * *
35350212 CAAGCCTGGGACCGGCTCGGTCCCCTCTGCG
130 -AAGCCGGGGATCGGCTCGGTCCCCCCTGCG
* * * *
35350243 TAC-GATAGATCCTGCTACCATAAACCTC-AGTCCTG-T-TGGATCTTAGACTGGGAATGAAC-C
1 TGCTG-TTGATCCTGCTACCATAACCCTCGA-TCCAGATCT-GATCTTAGACTGGGAATGAACTC
* * * * * ** * * * * *
35350303 CATATGCATAAGTCAACCCACAAAACGAGCGTGCGGGCGCTGAACCGATC-AAAAAGTCATAATA
63 CATATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGTGCTCAGCCGGCCGGAGAGGT-AGAATG
*
35350367 CGAAAGCCGGGGATCGACTCGGTCCCCCTCTGCG
127 CGAAAGCCGGGGATCGGCTCGGTCCCCC-CTGCG
* * * * * * *
35350401 TGCTGGT-AGTCCCGCTGCCACAACCCTCGGTCCAGCTATG-TCTTAGACAT-GGAATGAACTCC
1 TGCTGTTGA-TCCTGCTACCATAACCCTCGATCCAGATCTGATCTTAGAC-TGGGAATGAACTCC
* * * * *
35350463 CTATGCCTAAGCCAACCCACGAAACGGGTGTACGGGTGCTCAGCCGGCCGGAGAGGTAGAATGCG
64 ATATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGTGCTCAGCCGGCCGGAGAGGTAGAATGCG
* * *
35350528 TAAGCCGGGGATCGGCTCGATCCCCCCTACG
129 AAAGCCGGGGATCGGCTCGGTCCCCCCTGCG
* * * *
35350559 TGCTGTTGATCCTGTTGCCGTAACCCTCGATCCAG-TCTGATCTTAGACTGGGAATTAACT
1 TGCTGTTGATCCTGCTACCATAACCCTCGATCCAGATCTGATCTTAGACTGGGAATGAACT
35350619 TCGTATGCTT
Statistics
Matches: 290, Mismatches: 67, Indels: 38
0.73 0.17 0.10
Matches are distributed among these distances:
156 3 0.01
157 70 0.24
158 138 0.48
159 74 0.26
160 5 0.02
ACGTcount: A:0.24, C:0.29, G:0.25, T:0.21
Consensus pattern (159 bp):
TGCTGTTGATCCTGCTACCATAACCCTCGATCCAGATCTGATCTTAGACTGGGAATGAACTCCAT
ATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGTGCTCAGCCGGCCGGAGAGGTAGAATGCGAA
AGCCGGGGATCGGCTCGGTCCCCCCTGCG
Found at i:35351671 original size:26 final size:26
Alignment explanation
Indices: 35351630--35351682 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
35351620 CCGATCCGAT
*
35351630 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACCGGGAATGAACTCCATATG
* *
35351656 CTTAGACCGGGGATGAACTCCGTATG
1 CTTAGACCGGGAATGAACTCCATATG
35351682 C
1 C
35351683 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACCGGGAATGAACTCCATATG
Found at i:35352309 original size:26 final size:26
Alignment explanation
Indices: 35352269--35352321 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
35352259 GGCTCAAAAT
35352269 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
35352295 CTTAGACATGG-AATGAACTCCGTATG
1 CTTAGAC-TGGAAATGAACTCCGTATG
35352321 C
1 C
35352322 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:35354319 original size:157 final size:156
Alignment explanation
Indices: 35354052--35354337 Score: 351
Period size: 157 Copynumber: 1.8 Consensus size: 156
35354042 AAGGAATGAA
* * * * * * * *
35354052 CTGTATGCCTAAGCCAACCACGAAACGAGCGTGCGGGCGCTTAGTTGGCCGGAGAGGCAGAATGC
1 CTGTATGCATAAGCCAACCACAAAACGAGCATGCGAGCGCTGAGCTGACCGAAGAGGCAGAATGC
*
35354117 GCAAGCCGGAGATCAGCCTGGTCACCCCTACGTGCTGTAAATCCTGCT-ACACAACCCTTGGTCT
66 GCAAGCCGGAGATCAGCCTGGTCACCCCTACGTGCTGTAAATCCTGCTGACACAACCCTCGGTCT
35354181 GGTCTATCTTAGACTGGGAAAGAACT
131 GGTCTATCTTAGACTGGGAAAGAACT
* * *
35354207 CTGTATGCATAAGTCAACCCACAAAACGAGCATGCGAGTGCTGAGCCTGACCGAAGAGGCATAAT
1 CTGTATGCATAAGCCAA-CCACAAAACGAGCATGCGAGCGCTGAG-CTGACCGAAGAGGCAGAAT
* * * * *** *
35354272 GTGCAAGTCGGGGATCAG-CTGGTCCCCCTCTACGTGCTGTCGGTCCTGCTGCCACAACCCTCGG
64 GCGCAAGCCGGAGATCAGCCTGGTCACCC-CTACGTGCTGTAAATCCTGCTGACACAACCCTCGG
35354336 TC
128 TC
35354338 CAGCTGGGGC
Statistics
Matches: 107, Mismatches: 20, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
155 15 0.14
156 31 0.29
157 48 0.45
158 13 0.12
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (156 bp):
CTGTATGCATAAGCCAACCACAAAACGAGCATGCGAGCGCTGAGCTGACCGAAGAGGCAGAATGC
GCAAGCCGGAGATCAGCCTGGTCACCCCTACGTGCTGTAAATCCTGCTGACACAACCCTCGGTCT
GGTCTATCTTAGACTGGGAAAGAACT
Found at i:35354509 original size:158 final size:154
Alignment explanation
Indices: 35354035--35354520 Score: 410
Period size: 158 Copynumber: 3.1 Consensus size: 154
35354025 ACTCCATATG
* * * *
35354035 CTTAGACAAGGAATGAACT-GTATGCCTAAGCCAACCACGAAACGAGCGTGCGGGCGCTTAGTTG
1 CTTAGACTAGGAATGAACTCGTATGCCTAAGCCAACCACGAAACGAGCGTGCGAGCGCTCAG-TC
* * * *
35354099 GCCGGAGAGGCAGAATGCGCAAGCCGGAGATCAGC-CTGGTCACCCCTACGTGCTGTAAATCCTG
65 GACAGAGAGGCAGAATGCGCAAGCCGG-GATCAGCTC-GGTCCCCCCTACGTGCTGTAGATCCTG
*
35354163 CT-ACACAACCCTTGG-TCTGGTCT-AT
128 CTGACACAACCCTTGGTTC-GGTTTGAT
* * * * * * * * *
35354188 CTTAGACTGGGAAAGAACTCTGTATGCATAAGTCAACCCACAAAACGAGCATGCGAGTGCTGAGC
1 CTTAGACTAGGAATGAACTC-GTATGCCTAAGCCAA-CCACGAAACGAGCGTGCGAGCGCTCAGT
* * * * * *
35354253 CTGACCGAAGAGGCATAATGTGCAAGTCGGGGATCAGCT-GGTCCCCCTCTACGTGCTGTCGGTC
64 C-GACAG-AGAGGCAGAATGCGCAAG-CCGGGATCAGCTCGGTCCCCC-CTACGTGCTGTAGATC
* * * * * * **
35354317 CTGCTGCCACAACCCTCGGTCCAGCTGGGG
125 CTGCTGACACAACCCTTGGTTCGGTTTGAT
* * * *
35354347 CTTAGAC-ATGGAATGAACTCCCTATGCCTAAGCCAACCGACGAAATGGGCGTACGAGCGCTCAG
1 CTTAGACTA-GGAATGAACT-CGTATGCCTAAGCCAACC-ACGAAACGAGCGTGCGAGCGCTCAG
* * * *
35354411 TCGATCAGAGAGGCAGAATGCGTAAGCCGAGGATCAGCTCGGTCCCCCCTGCGTGCTATTGATCC
63 TCGA-CAGAGAGGCAGAATGCGCAAGCCG-GGATCAGCTCGGTCCCCCCTACGTGCTGTAGATCC
* *
35354476 TGCTGTCGCAACCCTTGGTTCGGTTTGAT
126 TGCTGACACAACCCTTGGTTCGGTTTGAT
35354505 CTTAGACTAGGAATGA
1 CTTAGACTAGGAATGA
35354521 TCTTTGTATG
Statistics
Matches: 254, Mismatches: 61, Indels: 31
0.73 0.18 0.09
Matches are distributed among these distances:
153 16 0.06
155 13 0.05
156 32 0.13
157 43 0.17
158 90 0.35
159 59 0.23
160 1 0.00
ACGTcount: A:0.24, C:0.27, G:0.28, T:0.21
Consensus pattern (154 bp):
CTTAGACTAGGAATGAACTCGTATGCCTAAGCCAACCACGAAACGAGCGTGCGAGCGCTCAGTCG
ACAGAGAGGCAGAATGCGCAAGCCGGGATCAGCTCGGTCCCCCCTACGTGCTGTAGATCCTGCTG
ACACAACCCTTGGTTCGGTTTGAT
Found at i:35356663 original size:159 final size:158
Alignment explanation
Indices: 35356289--35356663 Score: 441
Period size: 158 Copynumber: 2.4 Consensus size: 158
35356279 GGCTCAAAAT
* * * *
35356289 CTTAGACTGGGAATGAACTCCGTATGCCTAAGGCAACCCACGAAACGAGCGTGCGAGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTAAGC
* * * * ** * *
35356354 AGGCCAGAGAGGTAGAATGCACAAGTCGGGGATCGACCCGGTGCCCCCTACGTGCTGTCGATCCT
66 AGGCCAAAGAGGTAGAATGCACAAGTCGGAGATCGACCCGATCCCCCCTACGTGCTACCGAACCC
*
35356419 GCTGCCACAACCCTCGGTCTGGTCTGAT
131 GCTGCCACAACCCTCGGTCTGGTCTGAG
* * *
35356447 CTTAGACTGGGAATGAACTCCATATGCATAAGTCAACCCACGAAACAAGCGTGCGGGCGCTAAGC
1 CTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTAAG-
* * * * ** *
35356512 CA-GCTAAAGAGGTATAATGCATAAGTCGGAGATCGGCTTGATCCCCCTCTGCGTGCTACCGAAC
65 CAGGCCAAAGAGGTAGAATGCACAAGTCGGAGATCGACCCGATCCCCC-CTACGTGCTACCGAAC
*
35356576 CCGCTGCCACAACCCTCGGTCTGG-CTGGGG
129 CCGCTGCCACAACCCTCGGTCTGGTCT-GAG
* * * *
35356606 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTACGGGC
1 CTTAGAC-TGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGC
35356664 ACTCAGTCGG
Statistics
Matches: 183, Mismatches: 30, Indels: 7
0.83 0.14 0.03
Matches are distributed among these distances:
158 95 0.52
159 87 0.48
160 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.27, T:0.18
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTAAGC
AGGCCAAAGAGGTAGAATGCACAAGTCGGAGATCGACCCGATCCCCCCTACGTGCTACCGAACCC
GCTGCCACAACCCTCGGTCTGGTCTGAG
Found at i:35356682 original size:159 final size:157
Alignment explanation
Indices: 35356289--35356689 Score: 446
Period size: 159 Copynumber: 2.5 Consensus size: 157
35356279 GGCTCAAAAT
* * *
35356289 CTTAGACTGGGAATGAACTCCGTATGCCTAAGGCAACCCACGAAACGAGCGTGCGAGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * ** * *
35356354 AGGCCAGAGAGGTAGAATGCACAAGTCGGGGATCGACCCGGTGCCCCCTACGTGCTGTCGATCCT
66 -GGCCAGAGAGGTAGAATGCACAAGTCGGAGATCGACCCGATCCCCCCTACGTGCTACCGAACCC
*
35356419 GCTGCCACAACCCTCGGTCTGGTCTGAT
130 GCTGCCACAACCCTCGGTCTGGTCTGAG
* * * *
35356447 CTTAGACTGGGAATGAACTCCATATGCATAAGTCAACCCACGAAACAAGCGTGCGGGCGCTAAGC
1 CTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG-
* * * * * * ** *
35356512 CAGCTAAAGAGGTATAATGCATAAGTCGGAGATCGGCTTGATCCCCCTCTGCGTGCTACCGAACC
65 CGGCCAGAGAGGTAGAATGCACAAGTCGGAGATCGACCCGATCCCCC-CTACGTGCTACCGAACC
*
35356577 CGCTGCCACAACCCTCGGTCTGG-CTGGGG
129 CGCTGCCACAACCCTCGGTCTGGTCT-GAG
* * * * *
35356606 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTACGGGCACTCAG
1 CTTAGAC-TGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* *
35356670 TCGGCCGGAGAGGCAGAATG
65 -CGGCCAGAGAGGTAGAATG
35356690 TGCAAGCCAG
Statistics
Matches: 199, Mismatches: 40, Indels: 7
0.81 0.16 0.03
Matches are distributed among these distances:
158 95 0.48
159 103 0.52
160 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.28, T:0.18
Consensus pattern (157 bp):
CTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
GGCCAGAGAGGTAGAATGCACAAGTCGGAGATCGACCCGATCCCCCCTACGTGCTACCGAACCCG
CTGCCACAACCCTCGGTCTGGTCTGAG
Found at i:35356707 original size:159 final size:156
Alignment explanation
Indices: 35356289--35356782 Score: 438
Period size: 159 Copynumber: 3.1 Consensus size: 156
35356279 GGCTCAAAAT
* * *
35356289 CTTAGACTGGGAATGAACTCCGTATGCCTAAGGCAACCCACGAAACGAGCGTGCGAGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * ** * *
35356354 AGGCCAGAGAGGTAGAATGCACAAGTCGGGGATCGACCCGGTGCCCCCTACGTGCTGTCGATCCT
66 -GGCCAGAGAGGTAGAATGCACAAGTCGGGG-TCGGCCCGATCCCCCCTACGTGCTACCGAACCC
*
35356419 GCTGCCACAACCCTCGGTCTGGTCTGAT
129 GCTGCCACAACCCTCGGTCTGGTCTGAG
* * * *
35356447 CTTAGACTGGGAATGAACTCCATATGCATAAGTCAACCCACGAAACAAGCGTGCGGGCGCTAAGC
1 CTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG-
* * * * * * ** *
35356512 CAGCTAAAGAGGTATAATGCATAAGTCGGAGATCGGCTTGATCCCCCTCTGCGTGCTACCGAACC
65 CGGCCAGAGAGGTAGAATGCACAAGTCGG-GGTCGGCCCGATCCCCC-CTACGTGCTACCGAACC
*
35356577 CGCTGCCACAACCCTCGGTCTGG-CTGGGG
128 CGCTGCCACAACCCTCGGTCTGGTCT-GAG
* * * * *
35356606 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTACGGGCACTCAG
1 CTTAGAC-TGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * ** * * * ** *
35356670 TCGGCCGGAGAGGCAGAATGTGCAAGCCAGGGGTCGGCCCTG-T-CCCCCTGCATGCTGTCGATC
65 -CGGCCAGAGAGGTAGAATGCACAAGTC-GGGGTCGGCCC-GATCCCCCCTACGTGCTACCGAAC
** * * * * *
35356733 ATGCTGTCGCAACCCTCGGTCCGGTTTGAT
127 CCGCTGCCACAACCCTCGGTCTGGTCTGAG
*
35356763 CTTAGACTGTGAATGAACTC
1 CTTAGACTGGGAATGAACTC
35356783 TACAAGCTTA
Statistics
Matches: 267, Mismatches: 60, Indels: 19
0.77 0.17 0.05
Matches are distributed among these distances:
156 1 0.00
157 49 0.18
158 98 0.37
159 115 0.43
160 4 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (156 bp):
CTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
GGCCAGAGAGGTAGAATGCACAAGTCGGGGTCGGCCCGATCCCCCCTACGTGCTACCGAACCCGC
TGCCACAACCCTCGGTCTGGTCTGAG
Found at i:35357173 original size:26 final size:26
Alignment explanation
Indices: 35357144--35357196 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35357134 CTGGTCTGAT
*
35357144 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
35357170 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
35357196 C
1 C
35357197 CTAGGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:35357687 original size:26 final size:26
Alignment explanation
Indices: 35357646--35357698 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
35357636 CCGATCTGAT
35357646 CTTAGACTGGAAATGAACTCCATATG
1 CTTAGACTGGAAATGAACTCCATATG
** *
35357672 CTTAGACTGGGGATGAACTCCTTATG
1 CTTAGACTGGAAATGAACTCCATATG
35357698 C
1 C
35357699 CTAATTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCATATG
Found at i:35358167 original size:158 final size:158
Alignment explanation
Indices: 35357877--35358313 Score: 388
Period size: 158 Copynumber: 2.8 Consensus size: 158
35357867 GGTTACACAT
* *
35357877 GGAATGAACTCCGTATGCCTAACCCAACCCATGAAACGAGCGTGCGGGCACTCAGTCGACCAGAG
1 GGAATGAACTCCGTATGCCTAACCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGACCAGAG
* * * * * *
35357942 AGGTAAAATGCGCAAGTCGGGGATCAGCCCGATCCCCCCTGCGTGTTGTCGATCCTGTTGCCGCA
66 AGGCAAAATGCGCAAGCCGGGGATCAACCCGATCCCCCCTGCGTGCTGTCGATCCCGCTGCCGCA
35358007 ACCCTCTGTCCGGTCTGATCTTAGACTG
131 ACCCTCTGTCCGGTCTGATCTTAGACTG
* * ** * * * *
35358035 GGAATTAACTCTGTATGCCTAAGTCAACCCACGAAATGGGCGTGTGGGCACTGAGCC-AGCCAGA
1 GGAATGAACTCCGTATGCCTAACCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGA-CCAGA
* * *
35358099 GAGGCATAATGC-CAAGCCGGGGATCAACCCGATCCCCCTTTGCGTGCTGTCGATCCCGCTG-TG
65 GAGGCAAAATGCGCAAGCCGGGGATCAACCCGATCCCCC-CTGCGTGCTGTCGATCCCGCTGCCG
* * * **
35358162 ACAACCGTC-G-GC-TTC-GA-CTTAGACAA
129 -CAACCCTCTGTCCGGTCTGATCTTAGACTG
* * * *** * * *
35358188 GGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGA-CTGTACGGATGCTCAACCGGCAAGA
1 GGAATGAACTCCGTATGCCTAACCCAACCCACGAAACGAGC-GTGCGGGCACTCAGCCGACCAGA
* * ** ** * * * *
35358252 GAGGTAGAATGCGCAAGCCAAGGATCGGCCCAATCCCCCCTACGTGCTATCGATCCTGCTGC
65 GAGGCAAAATGCGCAAGCCGGGGATCAACCCGATCCCCCCTGCGTGCTGTCGATCCCGCTGC
35358314 TGGTCCTGCT
Statistics
Matches: 222, Mismatches: 50, Indels: 18
0.77 0.17 0.06
Matches are distributed among these distances:
152 1 0.00
153 81 0.36
154 23 0.10
155 2 0.01
156 1 0.00
157 27 0.12
158 87 0.39
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.19
Consensus pattern (158 bp):
GGAATGAACTCCGTATGCCTAACCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGACCAGAG
AGGCAAAATGCGCAAGCCGGGGATCAACCCGATCCCCCCTGCGTGCTGTCGATCCCGCTGCCGCA
ACCCTCTGTCCGGTCTGATCTTAGACTG
Found at i:35358387 original size:26 final size:26
Alignment explanation
Indices: 35358349--35358401 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
35358339 TCGGTCCAAT
35358349 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35358375 CTTAGAC-GTGGAATGAACTCCGTATG
1 CTTAGACTG-GGAATGAACTCCGTATG
35358401 C
1 C
35358402 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35359955 original size:26 final size:26
Alignment explanation
Indices: 35359914--35359964 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
35359904 TTGATTCAAT
35359914 CTTAGACTGGCAATGAACTCCGTATA
1 CTTAGACTGGCAATGAACTCCGTATA
**
35359940 CTTAGACTGGGGATGAACTCCGTAT
1 CTTAGACTGGCAATGAACTCCGTAT
35359965 GCCTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.22, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCGTATA
Found at i:35360285 original size:354 final size:341
Alignment explanation
Indices: 35359569--35360291 Score: 726
Period size: 354 Copynumber: 2.1 Consensus size: 341
35359559 CGTGGCTCAA
* *
35359569 AATCTTAGACTGGGAATGAACTTCGTATGCTTAGACATAGAATGAACTCCGTATGCCTAAGCCAA
1 AATCTTAGACTGGGAATGAACTCCGTATACTTAGACATAGAATGAACTCCGTATGCCTAAGCCAA
35359634 CCCATGAAACGAGCGTGCAGGCACTCAACCGGTCGGAGAGGCAGAATGCGTAAGCCGAGGATCAG
66 CCCATGAAACGAGCGTGCAGG-ACTCAACCGGTCGGAGAGGCAGAATGCGTAAGCCGAGGATCAG
* * *
35359699 CTCGGTCCCCCTCTACGTGCTACTGATCCCGCTGCCACAACCCTCGGTCCAGCGGGGCTTAGAAA
130 CCCGGTCCCCCTCTACGTGCTACTGATCCCGCTACCACAACCCTCGGTCCAGCGGGACTTAGAAA
* *
35359764 TGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGCGTGCGGGCACTCAGCGGGCCGGA
195 TGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGCGTGCGGGCACACAGCGAGCCGGA
* * * * * *
35359829 GAGGCAGAATGCGCAAGTCGGGGATCGGCCCGATCCCCCCTACGTGCTGTCGATCCTACTCTCGC
260 GAGGCAAAATGCACAAGCCGGGGACCGGCCCGATCCCCCCTACGTACTGTCGATCCTACTCTCAC
* * **
35359894 AACCCTCGGTTTGATTC
325 AAACCTCAGTCCGATTC
* * * *
35359911 AATCTTAGACTGGCAATGAACTCCGTATACTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCA
1 AATCTTAGACTGGGAATGAACTCCGTATACTTAGACAT-AGAATGAACTCCGTATGCCTAAGCCA
* ** *
35359975 ACCCATGAAATGAGCGTGCGAGTG-CTCAGTCGGTCGGAGAGGCAGAATGCGTAAGCCGGGGATC
65 ACCCATGAAACGAGCGTGC-AG-GACTCAACCGGTCGGAGAGGCAGAATGCGTAAGCCGAGGATC
* * * * * *
35360039 AGCCCAGTTCCCCC-CTACATGGTGCTGATACTGCTGTTGGTCCTGCTACTATAACCCTCTGTCC
128 AGCCC-GGTCCCCCTCTAC---GTGC---TA---C---TGATCCCGCTACCACAACCCTCGGTCC
* * * ** * *
35360103 GATC-TGATTTAG-GCTGGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAAC-GAGCGTGCG
180 -AGCGGGACTTAGAAAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAG-GCGTGCG
* * * * * * *
35360165 GGTACACAGCTAGCCGGAGAGGCAAAATGCACAAGCCTGGGACCGGCTCGGTCCCCTCTGCGTAC
242 GGCACACAGCGAGCCGGAGAGGCAAAATGCACAAGCCGGGGACCGGCCCGATCCCCCCTACGTAC
* * * * *
35360230 -GATCGATCCTGCTAC-CATAAACCTTAGTCCGGTTG
307 TG-TCGATCCTACT-CTCACAAACCTCAGTCCGATTC
*
35360265 GATCTTAGACTGGGAATGAAC-CCGTAT
1 AATCTTAGACTGGGAATGAACTCCGTAT
35360292 TCATAAGTCA
Statistics
Matches: 308, Mismatches: 52, Indels: 31
0.79 0.13 0.08
Matches are distributed among these distances:
341 1 0.00
342 119 0.39
343 9 0.03
344 1 0.00
345 4 0.01
348 2 0.01
351 1 0.00
353 9 0.03
354 159 0.52
355 3 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (341 bp):
AATCTTAGACTGGGAATGAACTCCGTATACTTAGACATAGAATGAACTCCGTATGCCTAAGCCAA
CCCATGAAACGAGCGTGCAGGACTCAACCGGTCGGAGAGGCAGAATGCGTAAGCCGAGGATCAGC
CCGGTCCCCCTCTACGTGCTACTGATCCCGCTACCACAACCCTCGGTCCAGCGGGACTTAGAAAT
GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGCGTGCGGGCACACAGCGAGCCGGAG
AGGCAAAATGCACAAGCCGGGGACCGGCCCGATCCCCCCTACGTACTGTCGATCCTACTCTCACA
AACCTCAGTCCGATTC
Found at i:35361653 original size:26 final size:26
Alignment explanation
Indices: 35361612--35361664 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
35361602 CCGATCCGAT
*
35361612 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACCGGGAATGAACTCCATATG
* *
35361638 CTTAGACCGGGGATGAACTCCGTATG
1 CTTAGACCGGGAATGAACTCCATATG
35361664 C
1 C
35361665 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACCGGGAATGAACTCCATATG
Found at i:35362281 original size:26 final size:26
Alignment explanation
Indices: 35362241--35362293 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
35362231 GGCTCAAAAT
35362241 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
35362267 CTTAGACATGG-AATGAACTCCGTATG
1 CTTAGAC-TGGAAATGAACTCCGTATG
35362293 C
1 C
35362294 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:35362642 original size:159 final size:158
Alignment explanation
Indices: 35362266--35362683 Score: 407
Period size: 159 Copynumber: 2.6 Consensus size: 158
35362256 AACTCCGTAT
* * * *
35362266 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGGAATGAGCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA-GAAACGAGCGTGCAGGCGCTCAG
* * * *
35362331 CCGGCTGGAGAGGTAGAATGCGCAAGTCGGGGATCTGCCCAGTCACCCCCTGCGTGCTGTAAATC
65 TCGGCTGGAGAGGCAGAATGCGCAAGTCGGGGATCTGCACAGTCACCCCCTACGTGCTGTAAATC
** *
35362396 TTGCTACCTCAACCCTCGATCCGGTCTGA
130 CCGCTACCTCAACCCTCGATCCGGACTGA
* * * * * * * * *
35362425 TCTTAGA-TTGGGAATGAACTCCGTACGCATAAGTCAACCTACAAATCGAGTGTGCAGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCAGAAA-CGAGCGTGCAGGCGCTCA
* * * *
35362489 GTCGACTGAAGAGGCATAATGCGCAAGTCGGGGATCAT-CACAGTC-CCCGTCTACGTGCTGCT-
64 GTCGGCTGGAGAGGCAGAATGCGCAAGTCGGGGATC-TGCACAGTCACCC-CCTACGTGCTG-TA
** * *
35362551 GGTCCCGCTACCAT-AACCCTCGGTCC-GACTGGG
126 AATCCCGCTACC-TCAACCCTCGATCCGGACT-GA
* *
35362584 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGGGCGTACAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA-GAAACGAGCGTGCAGGCGCTCAG
* * * *
35362649 TCGGCCGGAGAGGCAGAACGCGCAAGCCAGGGATC
65 TCGGCTGGAGAGGCAGAATGCGCAAGTCGGGGATC
35362684 GGCTCGATTC
Statistics
Matches: 204, Mismatches: 46, Indels: 18
0.76 0.17 0.07
Matches are distributed among these distances:
158 9 0.04
159 188 0.92
160 7 0.03
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAGAAACGAGCGTGCAGGCGCTCAGT
CGGCTGGAGAGGCAGAATGCGCAAGTCGGGGATCTGCACAGTCACCCCCTACGTGCTGTAAATCC
CGCTACCTCAACCCTCGATCCGGACTGA
Found at i:35362793 original size:26 final size:26
Alignment explanation
Indices: 35362742--35362794 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
35362732 TTTAGTCGAT
*
35362742 CTTAGACTAGGAATGAACTCTATATG
1 CTTAGACTAGGAATGAACTCCATATG
* * *
35362768 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
35362794 C
1 C
35362795 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:35363082 original size:12 final size:12
Alignment explanation
Indices: 35363065--35363096 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
35363055 ATTCTACCGA
35363065 TCCTACTGCTGG
1 TCCTACTGCTGG
35363077 TCCTACTGCTGG
1 TCCTACTGCTGG
35363089 TCCTACTG
1 TCCTACTG
35363097 TCGCAACCCT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.09, C:0.34, G:0.22, T:0.34
Consensus pattern (12 bp):
TCCTACTGCTGG
Found at i:35364053 original size:26 final size:26
Alignment explanation
Indices: 35364001--35364053 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
35363991 GGCTCAAAAT
** ***
35364001 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACAAGGAATGAACTCCACATG
35364027 CTTAGACAAGGAATGAACTCCACATG
1 CTTAGACAAGGAATGAACTCCACATG
35364053 C
1 C
35364054 CAAAGCCAAC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.32, C:0.21, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACAAGGAATGAACTCCACATG
Found at i:35364855 original size:171 final size:171
Alignment explanation
Indices: 35364527--35365139 Score: 416
Period size: 171 Copynumber: 3.6 Consensus size: 171
35364517 ATCTCTGTAT
* * * * * * * *
35364527 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATACGGGAGCTCAA
1 GCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
** *** ** * **
35364592 CCGATCGGAGAGGTGTAATGCACAAGC-TGAGGATC-AGCCCGGTCCC-CCTCTACGTGT-TGCC
66 CCGGCCGGAGAGGCAAAATGTGCAAGCAAG-GGATCGA-CCCGGTCCCACCT-TACGT-TCTATC
* * * * ** ** ***
35364653 GATCCCATTGCTGGTCCTGCTACCACAACCCTCAGTCCGA-CTGGG
127 GATCCTACTGCTAGTCCTACCGCTGCAACCCTCAGTCCGATC-CAA
* *
35364698 GCTTAGAC-ATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGTGCTCA
1 GCTTAGACTA-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * ** * *
35364762 GCTGGCTGGAGAGGCAAAATGTGCAAGTTAGGGATCGACTCGGTCCC-CCTTTACGTTCTGTCGA
65 GCCGGCCGGAGAGGCAAAATGTGCAAGCAAGGGATCGACCCGGTCCCACC-TTACGTTCTATCGA
* *
35364826 TCCTACTGCTAGTCCTACCGCTGCAACCCTCGGTCTGATCCAA
129 TCCTACTGCTAGTCCTACCGCTGCAACCCTCAGTCCGATCCAA
* * * *
35364869 TCTTAGACTAGGAATGAACTTCGTATGCCTAAGCCAACCTATGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
** * * *
35364934 CCGGCCGGAGAGGCTGAATGTGCAAGCAAGGGATTGGCCCGGTCCCACCTTGCGTTCTATCGATC
66 CCGGCCGGAGAGGCAAAATGTGCAAGCAAGGGATCGACCCGGTCCCACCTTACGTTCTATCGATC
* * * **
35364999 CT-C--C---T--T---GCCGCAATCCTCGGTCCGATCTGA
131 CTACTGCTAGTCCTACCGCTGCAACCCTCAGTCCGATCCAA
* * * * * * * * *
35365029 TCTTAGACTGGGAATGAACCCCGTATGCCTAAGTCAACCCAGGAAACAAGCATGCGGGCACTGAG
1 GCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * ** *
35365094 CCAGCCGAAGAGGCATAATGCGCAAGCCGGGGATCGACCCGATCCC
66 CCGGCCGGAGAGGCAAAATGTGCAAGCAAGGGATCGACCCGGTCCC
35365140 TCTTCGTGTG
Statistics
Matches: 357, Mismatches: 77, Indels: 27
0.77 0.17 0.06
Matches are distributed among these distances:
160 110 0.31
163 1 0.00
165 1 0.00
168 1 0.00
170 2 0.01
171 235 0.66
172 7 0.02
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (171 bp):
GCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGGCCGGAGAGGCAAAATGTGCAAGCAAGGGATCGACCCGGTCCCACCTTACGTTCTATCGATC
CTACTGCTAGTCCTACCGCTGCAACCCTCAGTCCGATCCAA
Found at i:35365388 original size:26 final size:26
Alignment explanation
Indices: 35365347--35365399 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
35365337 TTGATTCAAT
35365347 CTTAGACTGGCAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
**
35365373 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
35365399 C
1 C
35365400 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCGTATG
Found at i:35367830 original size:26 final size:26
Alignment explanation
Indices: 35367793--35367844 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
35367783 CGGTCCGATT
35367793 TTAGACTGGGAATGAACT-TCGTATGC
1 TTAGACTGGGAATGAACTCT-GTATGC
35367819 TTAGACAT-GGAATGAACTCTGTATGC
1 TTAGAC-TGGGAATGAACTCTGTATGC
35367845 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCTGTATGC
Found at i:35368247 original size:855 final size:857
Alignment explanation
Indices: 35366064--35368364 Score: 2650
Period size: 869 Copynumber: 2.7 Consensus size: 857
35366054 CATGGCTCAA
* * *
35366064 AATCTTAGACTGGGAATGAACTCCATATGCTTAGACAAGGAATGAACTTTGTATGCCTAAGCCAA
1 AATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAA
* * * * *
35366129 CCCACGAAACGAGCGTGCGGGCGCTCAGTTGGCCGGAGAGGTAGAATGCGCAAGCCAGAGACCGG
66 CCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGG
* * * * * * * *
35366194 CCTGGTCACCCCTTGCGTGCTGTAAATCCTACTACTACAACCCTTGGTTTGGTCT-ACTCTTAGA
131 CCCGATC-CCCCATGTGTGCTGTCAATCCTACTACCACAACCC-TCGTTCGGTCTGA-TCTTAGA
* * * * * **
35366258 CTGGGAAAGAACTCCGTATGCATAAGTCAACCCACAAAACGAGCATGCGGGTGCTGAGCTGACCG
193 CTGGGAATGAACTTCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGAGCACTGAGCTGACCG
* * *
35366323 AAGAGGCATAATGTGCAAGCCGGGGATCAGCCTGGTCCCCCTCTACGTGCTGTCGGTCCTGCTGC
258 AAGAGGCATAATGCGCAAGCTGGGGATCA-CCTGGTCCCCCTCT-CGTGCTGTCGGTCCCGCTGC
* * *
35366388 CACAACACTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCGACG
321 CACAAC-CTCGTTCGA-CTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACG
* * * * *
35366453 AAATGGGCGTACGAGCGCTCAGTCGATCAGAGAGGCAGAATGCGTAAGCCGAGGATCAGCTCGGT
384 AAATGGGCGTACGGGCGCTCAGCCGACCAGAGAGGCAGAATGCGTAAGCCGGGGATCGGCTCGGT
* * ** *
35366518 CCCCCCTGCGTGCTATTGATCCTGCTGTCGCAACCCTTGGTTCGGTTTGATCTTAGACTAGGAAT
449 CCCCCCTGCGTGCTGTCGATCCTGCTGTCGCAACCCTCAGTTCGGTTTGATCTTAGACTGGGAAT
* * * * ** **
35366583 GATCTTTGTATGCTTAGACTGGGGATGAACACTGTATGCCTAAGTCAACCCAT-AGAATGAGTGT
514 GAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGA-AACAAGCAT
* * ** * * *
35366647 GCGGGTGCTCAACCGGTGGGAGAGGCGTAATGCGTAAGCCGAGGATCAGCCCGATCCCCCTCTAC
578 ACAGGTGCTCAACCGGTCAGAGAGGCATAATGCGAAAGCCGAGGACCAGCCCGATCCCCCTCTAC
* * *
35366712 GTGCTGCTGATCCCGCTACCGGTCCTGCTATCACAACCCTCAGTCTGACTGGGGCTTAGACATGG
643 GTGCTGCTGATCCCGCTACCGATCCTACTACCACAACCCTCAGTCTGACTGGGGCTTAGACATGG
* * ***
35366777 AATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCGCTCAGCTGGCCGGAGAG
708 AATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTACAGGCACTCAGCCAACCGGAGAG
* * *
35366842 GCAAAATGCGTAAGCCGAGGATCGGGTCGATCCCCCTTTACGTTCGTCGATCCTGCTACTGGTCC
773 GCAAAATGCGCAAGCCGAGGATCGGCTCGATCCCCC--TAC-TTCGTCG---CTGCTACTGATCC
* * * *
35366907 TACTGCCAAAACCCTAGGTCCAATCT
832 GACTACCAAAACCCTAGATCCAATCC
* * * **
35366933 AATCTTAGATTGGGAATGAACTCCGTATGCTTAGACATGGACTGAACTCCGTATGTGTAAGCCAA
1 AATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAA
* * * * *
35366998 CCCACGAAACGAGCGTGCGAGCACTCAGTCGGCCGGAGAGACAGAATGCGCAAGCCGAGGATCGA
66 CCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGG
* * * * *
35367063 CCCGATCCCCCAT-TACCTACTGTCGATCCTACTACCACAATCCTCGATCTGGTCTGATCTTAGA
131 CCCGATCCCCCATGT--GTGCTGTCAATCCTACTACCACAACCCTCGTTC-GGTCTGATCTTAGA
* ** * *
35367127 CTGGGAATGAACCTCGTATGCCTAAGTCAACCCATGAAACGAGCGTGC-AGGCACTGAACTGGCC
193 CTGGGAATGAACTTCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGA-GCACTGAGCTGACC
* * *
35367191 GAAGAGGCATAATGCGCAAGCTGGGGATCGGCCTGGTCCCCCTATCTGTGCTGTCGGTCCCGTTG
257 GAAGAGGCATAATGCGCAAGCTGGGGATC-ACCTGGTCCCCCTCTC-GTGCTGTCGGTCCCGCTG
* * * ** *
35367256 CCATAGCCCTCGGTCCGGTTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
320 CCACA-ACCTC-GTTCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
* * * * * *
35367321 GAAACGGGCGTACGGGTGCTCAACCGGCCAGAGAGGCAAAATGTGTAAGCCGGGGATCGGCTCGG
383 GAAATGGGCGTACGGGCGCTCAGCCGACCAGAGAGGCAGAATGCGTAAGCCGGGGATCGGCTCGG
* * * * *
35367386 TCCCCCCTGCGTGCTGCCGATCCTGCTATCGTAACCCACAGTCCGGTTTGATCTTAGACTGGGAA
448 TCCCCCCTGCGTGCTGTCGATCCTGCTGTCGCAACCCTCAGTTCGGTTTGATCTTAGACTGGGAA
* *
35367451 TGAACTCTGCATGCTTAGACTGGGGATGAACTCCGTTTGCCTAAGTCAACCCATGAAACAAGCAT
513 TGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCAT
** * * * * * **
35367516 ACAGGTGCTCAGTCGGTCAGAGAGGCATAATGCGAAAGTCGGGGACCAGCTCGGTCCCCTTCTGT
578 ACAGGTGCTCAACCGGTCAGAGAGGCATAATGCGAAAGCCGAGGACCAGCCCGATCCCCCTCTAC
* * *
35367581 GTGCTG-TCGATCCCGCTACCGATCCTACTGCCACAACCCTCGGTCTGGCTGGGGC-TAGACATG
643 GTGCTGCT-GATCCCGCTACCGATCCTACTACCACAACCCTCAGTCTGACTGGGGCTTAGACATG
* * * * * *
35367644 GAATGAACTTC-TATGCCTAAGCCAACCCATGAAATGAACGTGCGGGCACTCAGCCAATCGGAGA
707 GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTACAGGCACTCAGCCAACCGGAGA
* * * * * *
35367708 GGCAGAATGCGCAAGTCGGGGATTGGCTCGATCCCCC-A-TT-G-CG-TGCTATTGATTCGACTA
772 GGCAAAATGCGCAAGCCGAGGATCGGCTCGATCCCCCTACTTCGTCGCTGCTACTGATCCGACTA
** **
35367768 CCGTAACCCTCA-ATCCGGTCC
837 CCAAAACCCT-AGATCCAATCC
* * *
35367789 GATTTTAGACTGGGAATGAACTTCGTATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAA
1 AATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAA
* ** * ** * *
35367854 CCCACGAAATGAGCGTGCGGGCGCTCAACCGACCGGAGAGGCAGAATGCATAAGTCGGGGATTGG
66 CCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGG
* *
35367919 CCCGATCCTCCC-TGTGTGCTGTCAATCCTGCTACCGCAACCCTCAGTTCGGTCTGATCTTAGAC
131 CCCGATCC-CCCATGTGTGCTGTCAATCCTACTACCACAACCCTC-GTTCGGTCTGATCTTAGAC
* * * *
35367983 TAGGAATGAACTTCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGAGCACTGAGCCGACCAA
194 TGGGAATGAACTTCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGAGCACTGAGCTGACCGA
* * ** * *
35368048 AAAGGCATAATGCGCAAGCTAGGGATCTACCCAGTTCCCCTCTGCGTGCTGTTGGTCCCGCTGCC
259 AGAGGCATAATGCGCAAGCTGGGGATC-ACCTGGTCCCCCTCT-CGTGCTGTCGGTCCCGCTGCC
*
35368113 ACAACCGTCAGTTCGACTGGGGCATAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGA
322 ACAACC-TC-GTTCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGA
** * * * * *
35368178 AATGGGCGTGTGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGTAAGCTGGGGATTGGCCCGATC
385 AATGGGCGTACGGGCGCTCAGCCGACCAGAGAGGCAGAATGCGTAAGCCGGGGATCGGCTCGGTC
* * * *
35368243 CCCCCTGCGTGCTGTCGATCCTGCTGTCGCAACCCTCTGTTCGATCTGATCTTAGACGGGGAATG
450 CCCCCTGCGTGCTGTCGATCCTGCTGTCGCAACCCTCAGTTCGGTTTGATCTTAGACTGGGAATG
* *
35368308 AACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
515 AACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAAC
35368365 GAACGTGTGG
Statistics
Matches: 1194, Mismatches: 220, Indels: 50
0.82 0.15 0.03
Matches are distributed among these distances:
854 2 0.00
855 360 0.30
856 148 0.12
857 5 0.00
860 2 0.00
861 1 0.00
862 2 0.00
864 1 0.00
867 74 0.06
868 28 0.02
869 566 0.47
870 5 0.00
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (857 bp):
AATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAA
CCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGG
CCCGATCCCCCATGTGTGCTGTCAATCCTACTACCACAACCCTCGTTCGGTCTGATCTTAGACTG
GGAATGAACTTCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGAGCACTGAGCTGACCGAAG
AGGCATAATGCGCAAGCTGGGGATCACCTGGTCCCCCTCTCGTGCTGTCGGTCCCGCTGCCACAA
CCTCGTTCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGG
CGTACGGGCGCTCAGCCGACCAGAGAGGCAGAATGCGTAAGCCGGGGATCGGCTCGGTCCCCCCT
GCGTGCTGTCGATCCTGCTGTCGCAACCCTCAGTTCGGTTTGATCTTAGACTGGGAATGAACTCT
GTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCATACAGGTGC
TCAACCGGTCAGAGAGGCATAATGCGAAAGCCGAGGACCAGCCCGATCCCCCTCTACGTGCTGCT
GATCCCGCTACCGATCCTACTACCACAACCCTCAGTCTGACTGGGGCTTAGACATGGAATGAACT
CCGTATGCCTAAGCCAACCCACGAAACGAACGTACAGGCACTCAGCCAACCGGAGAGGCAAAATG
CGCAAGCCGAGGATCGGCTCGATCCCCCTACTTCGTCGCTGCTACTGATCCGACTACCAAAACCC
TAGATCCAATCC
Found at i:35368334 original size:26 final size:26
Alignment explanation
Indices: 35368293--35368345 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
35368283 TCGATCTGAT
35368293 CTTAGACGGGGAATGAACTCCGTATG
1 CTTAGACGGGGAATGAACTCCGTATG
35368319 CTTAGACTGGGG-ATGAACTCCGTATG
1 CTTAGAC-GGGGAATGAACTCCGTATG
35368345 C
1 C
35368346 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.25, C:0.21, G:0.30, T:0.25
Consensus pattern (26 bp):
CTTAGACGGGGAATGAACTCCGTATG
Found at i:35368868 original size:26 final size:26
Alignment explanation
Indices: 35368832--35368884 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
35368822 CCGATCTGAT
35368832 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
35368858 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
35368884 C
1 C
35368885 CTAAGTCAGC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:35369608 original size:26 final size:26
Alignment explanation
Indices: 35369557--35369609 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
35369547 GGCTCAAAAT
**
35369557 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
35369583 CTTAGACAT-GGAATTAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
35369609 C
1 C
35369610 CTGAGCCGAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:35370076 original size:26 final size:26
Alignment explanation
Indices: 35370040--35370117 Score: 138
Period size: 26 Copynumber: 3.0 Consensus size: 26
35370030 CGATCTGATT
*
35370040 TTAGATTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
35370066 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
*
35370092 TTAGACTGGGGATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
35370118 CTAAGTCAAC
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.28
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:35371736 original size:26 final size:26
Alignment explanation
Indices: 35371707--35371759 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
35371697 CTGATCCGAT
35371707 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* * *
35371733 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
35371759 C
1 C
35371760 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:35374298 original size:26 final size:26
Alignment explanation
Indices: 35374269--35374321 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
35374259 CCGATCCGAT
35374269 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* * *
35374295 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
35374321 C
1 C
35374322 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:35375917 original size:159 final size:158
Alignment explanation
Indices: 35375544--35375918 Score: 394
Period size: 158 Copynumber: 2.4 Consensus size: 158
35375534 AACTCCATAT
* * *
35375544 GCTTAGACATAGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGTGCTGAG
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGTGTACGGGTGCTGAG
* * *
35375609 CCAACCGGAGAGGCAGAATGCATAAGCCGGGGACCGACCCTGTCCCCCTTACGTGCTGTCGATCC
66 CCAACCGGAGAGGCAGAATGCATAAGCCGAGGACCGACCCGGTCCCCCTTACGTGCTGCCGATCC
* ** * *
35375674 TACTGCTGCAACCCTCAGTCCAATTTGA
131 CACTGCCACAACCCTCAGTCCAACTGGA
* * ** * * **
35375702 TCTTAGA-TTGGGAATGAACTCTGTATGCCTAAGTTAACCCACTAAACAAGCATACGGGTGCTGA
1 GCTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGTGTACGGGTGCTGA
* * * * * * * * *
35375766 GCTAGCCGGAGAGGCATAATGCGA-AAGTCGAGGATCGGCCCGGTCCTCCTTTGCGTGCTGCCGG
65 GCCAACCGGAGAGGCAGAATGC-ATAAGCCGAGGACCGACCCGGTCC-CCCTTACGTGCTGCCGA
* ** *
35375830 TCCCGCTGCCACAACCCTTGGTCCAGCTGGA
128 TCCCACTGCCACAACCCTCAGTCCAACTGGA
** *
35375861 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTACGGG
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGTGTACGGG
35375919 CGTTCAACCA
Statistics
Matches: 170, Mismatches: 43, Indels: 7
0.77 0.20 0.03
Matches are distributed among these distances:
157 1 0.01
158 87 0.51
159 81 0.48
160 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.21
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGTGTACGGGTGCTGAG
CCAACCGGAGAGGCAGAATGCATAAGCCGAGGACCGACCCGGTCCCCCTTACGTGCTGCCGATCC
CACTGCCACAACCCTCAGTCCAACTGGA
Found at i:35376061 original size:26 final size:26
Alignment explanation
Indices: 35376021--35376072 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
35376011 CAGTTCAATC
*
35376021 TTAGACTGGGAATGAACTTTGTATGG
1 TTAGACTGGGAATGAACTCTGTATGG
*
35376047 TTAGACTGGGGATGAACTCTGTATGG
1 TTAGACTGGGAATGAACTCTGTATGG
35376073 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.10, G:0.33, T:0.33
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCTGTATGG
Found at i:35376568 original size:12 final size:12
Alignment explanation
Indices: 35376551--35376581 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
35376541 GAGGTATAGG
35376551 GGGCCAATATAA
1 GGGCCAATATAA
35376563 GGGCCAATATAA
1 GGGCCAATATAA
35376575 GGGCCAA
1 GGGCCAA
35376582 GTACCAGCAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.39, C:0.19, G:0.29, T:0.13
Consensus pattern (12 bp):
GGGCCAATATAA
Found at i:35376899 original size:26 final size:26
Alignment explanation
Indices: 35376848--35376900 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
35376838 CCGATCTGAT
* *
35376848 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
35376874 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
35376900 C
1 C
35376901 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:35377746 original size:26 final size:26
Alignment explanation
Indices: 35377717--35377769 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
35377707 CCGGTCTGAT
35377717 CTTAAACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
* * *
35377743 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
35377769 C
1 C
35377770 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:35378134 original size:26 final size:26
Alignment explanation
Indices: 35378097--35378149 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
35378087 TCGGTCTGAT
*
35378097 CTTAGACTTGGAATGAACTCCATATG
1 CTTAGACATGGAATGAACTCCATATG
*
35378123 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCATATG
35378149 C
1 C
35378150 CAAAGCTAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:35378424 original size:159 final size:157
Alignment explanation
Indices: 35378261--35378625 Score: 344
Period size: 159 Copynumber: 2.3 Consensus size: 157
35378251 CCTACTGTCG
* *
35378261 CAACCCTCAGTCCAGACCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAA
1 CAACCCTCAGTCCAGACCGATCTTAGACTGGGAATGAACTCTATATGCCTAAGTCAACCCACGAA
* * * * ** * * *
35378326 ACGGGCATGT-GGGTGCTGAGCTGGTTGGAGAGGCATAATGCACAAGACGGGGATCAGCCCGGTC
66 ACGGG--TGTAGAGTGCTCAACTAGCCGAAGAGGCAGAATGCACAAGACGGGGATCAGCCCAGTC
* *
35378390 C-CTCTCTGCGTGCTATCGGTCTCGCTGCCA
129 CGC-CT-TGCGTGCTATCGATCTCGCTACCA
* * ** ** *
35378420 CAACCCT-TGATCCA-ACTGGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGTTAACCCAC
1 CAACCCTCAG-TCCAGAC-CGATCTTAGAC-TGGGAATGAACTCTATATGCCTAAGTCAACCCAC
* * *
35378482 GAAACGGGTGTACGAGTGCTCAACTAGCCGAAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCAG
63 GAAACGGGTGTA-GAGTGCTCAACTAGCCGAAGAGGCAGAATGCACAAGACGGGGATCAGCCCAG
*
35378547 TCCGCCTTGCGTGCTATCGATCTCGCTACCG
127 TCCGCCTTGCGTGCTATCGATCTCGCTACCA
* * * * * * *
35378578 TAATCCTCGGTCTAGTCTGATCTTATACTGGGAATGAACTCTATATGC
1 CAACCCTCAGTCCAGACCGATCTTAGACTGGGAATGAACTCTATATGC
35378626 TTAGACTGGG
Statistics
Matches: 163, Mismatches: 34, Indels: 19
0.75 0.16 0.09
Matches are distributed among these distances:
157 4 0.02
158 55 0.34
159 102 0.63
160 2 0.01
ACGTcount: A:0.24, C:0.27, G:0.26, T:0.22
Consensus pattern (157 bp):
CAACCCTCAGTCCAGACCGATCTTAGACTGGGAATGAACTCTATATGCCTAAGTCAACCCACGAA
ACGGGTGTAGAGTGCTCAACTAGCCGAAGAGGCAGAATGCACAAGACGGGGATCAGCCCAGTCCG
CCTTGCGTGCTATCGATCTCGCTACCA
Found at i:35378628 original size:26 final size:26
Alignment explanation
Indices: 35378599--35378651 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
35378589 CTAGTCTGAT
* *
35378599 CTTATACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
35378625 CTTAGACTGGGTATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
35378651 C
1 C
35378652 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:35378702 original size:869 final size:864
Alignment explanation
Indices: 35376685--35378703 Score: 2138
Period size: 869 Copynumber: 2.3 Consensus size: 864
35376675 CTCCGACAAT
35376685 TGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGCGTGCGGGTGC
1 TGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGCGTGCGGGTGC
* * * * * *
35376750 TCAGCTGATCGGAGAGCCAGAATGTGCAAGCCAGGGATTGGCCCGATCCCCCCTACGTGCTGTCG
66 TCAACTG-TCGGAGAGGCAGAATGCGCAAGTC-GGGATCGGCCCG-TCCCCCCTGCGTGCT-TCG
* *
35376815 ATCCTGCTGCCGCAACCCTCAGTCCGATCTGATCTTAGACTGGGAATGAACT-TCGTATGCTTAG
127 ATCCTGCTGCCGCAACCCTCAGTCAG-TCTGATCTTAAACTGGGAATGAACTCT-GTATGCTTAG
* * **
35376879 ACTGGGGATGAACTCCATATGCCTAAGTCAACCCATGAAATGAGCGCGTGGGCACTCAATCGGTT
190 ACTGGGGATGAACTCCATATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGTGCTC-A-----T
** * * *
35376944 GGAGATGCCATCCGAAAAGGCATAATGCACAAGCTGAGGATCAGCCAAGTCCCCCTCTGCGTGCT
249 GCCGA-GCCA---G-AGAGGCATAATGCACAAGCAGAGGATCAGCCAAGTCCCCCTCTGCATGCT
*
35377009 ATAGATCCCACTGCCAGTCCTGCTGCCACAACCCTCGCTCCAGCTAGGGCTTAGACATGGAATGA
309 ACAGATCCCACTGCCAGTCCTGCTGCCACAACCCTCGCTCCAGCTAGGGCTTAGACATGGAATGA
* * * *
35377074 ACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGACTGCTCAATCGGCCGGAAAGGTAGA
374 ACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGACTGCTCAATCGGCCGGAAAGGCAAA
* * * * * *
35377139 CTACGCAAGTCAGGGATCGACCCGATTCCCCCTACGTGCTGTCGATCCTGCTGCTGGTCCTGCTA
439 ATACGCAAGCCAGGGATCGACCCGATTCCCACTACATGCTGCCGATCCTGCTGCTCGTCCTGCTA
* *
35377204 CTGGAACCCTCGGTCCAGTTCGATCTTAAACTGGGAATGAACTCCATATGCTTAGACATGAAATG
504 CCGGAACCCTCGATCCAGTTCGATCTTAAACTGGGAATGAACTCCATATGCTTAGACATGAAATG
* * ** * *
35377269 AACTCCCTATGCCTAAGCCAACCCACGAAATGAGTGTACGGGCGCTCAGCCGATCGAAGAGGCAG
569 AACTCCCTATGCCAAAGCCAACCCACGAAACGACCGTACGGGCGCTCAACCGACCGAAGAGGCAG
** ** * * * *
35377334 AATGCACAAGTTAGGGATCGGTTCGGCCCTCCTGCGTGCTGTCGATCCTGCTGTCACAACCCTCG
634 AATGCACAAGCCAGGGATCGGCCCGCCCCTCCTACGTGCTGTCGATCCTACTGTCACAACCCTCA
** *
35377399 GTCCAGTTCGATCTTAGACTGGGAATGAACTCATTATGCATAAGTCAACCCATGAAACGAGCGTG
699 GTCCAGACCGATCTTAGACTGGGAATGAACTCATTATGCATAAGTCAACCCATGAAACGAGCATG
* * * * * *
35377464 CGGGAGCTGAACCGACCAAAGAATCATAATGTATAAGCCGGGGATCGGTCCGGTCCCCCTCTGCG
764 CGGGAGCTGAACCGACCAAAGAAGCATAATGCACAAGACGGGGATCAGCCCGGTCCCCCTCTGCG
**
35377529 TGTAGCCGGTCCCACTGCCACAACCCTCGATCCTGC
829 TGTAGCCGGTCCCACTGCCACAACCCTCGATCCAAC
* * *
35377565 TGGGGCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCATGAAACAGGCGTGCGGGTGT
1 TGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGCGTGCGGGTGC
* * ** *
35377630 TCAGTCGGTCGGAGAGGCAGAATGCGCAAGTCGGG-TC--CCC--CCTACGTGC-TGC-T-GATC
66 TCA-ACTGTCGGAGAGGCAGAATGCGCAAGTCGGGATCGGCCCGTCCCCCCTGCGTGCTTCGATC
* * * *
35377687 CTGCTGTCGCAACCCTCTGTCCGGTCTGATCTTAAACTGGGAATGAACTCCGTATGCTTAGACTG
130 CTGCTGCCGCAACCCTCAGT-CAGTCTGATCTTAAACTGGGAATGAACTCTGTATGCTTAGACTG
* * * **
35377752 GGGATGAACTTCGTATGCCTAAGTCAACCCATGAGATGAGCGTGCAAGTGCTCAGTCGACCGAAG
194 GGGATGAACTCCATATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGTGCTCA-T-G-CC---G
* *** * * * *
35377817 AGGCCGGTCGGAGAGGCATAATGTGTAAGCCAG-GGATCAGCCCAGTCCCCCTCTGCATGTTGCC
253 A-G-C---CAGAGAGGCATAATGCACAAG-CAGAGGATCAGCCAAGTCCCCCTCTGCATGCTACA
* * *
35377881 GATCCCACTGTCGGTCCTGCTGCCACAACCCTCAG-TCC-GACT-GAGGTTTAGACATGGAATGA
312 GATCCCACTGCCAGTCCTGCTGCCACAACCCTC-GCTCCAG-CTAG-GGCTTAGACATGGAATGA
* * ** *
35377943 ACTCTGTATGCCTAAGCCAACCCACGAAACGAGTGTACGGGTGCTCAA-CTGGCCGGAGAGGCAA
374 ACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGACTGCTCAATC-GGCCGGAAAGGCAA
* * * *
35378007 AATGCGTAAGCCAGGGATTGGA-CCGA-TCCCAACTGCATGCTGCCGATCCTGCTGCTCGTCCTG
438 AATACGCAAGCCAGGGA-TCGACCCGATTCCC-ACTACATGCTGCCGATCCTGCTGCTCGTCCTG
* * * * * * * *
35378070 CTACCGTAACCTTTGATTC-GGTCTGATCTTAGACTTGGAATGAACTCCATATGCTTAGACATGG
501 CTACCGGAACCCTCGATCCAGTTC-GATCTTAAACTGGGAATGAACTCCATATGCTTAGACATGA
* * * * * * * *
35378134 AATGAACTCCGTATGCCAAAGCTAAGCCACGAAACGACCGTGCGGGTGCTTAATCGACCGGAGAG
565 AATGAACTCCCTATGCCAAAGCCAACCCACGAAACGACCGTACGGGCGCTCAACCGACCGAAGAG
* *
35378199 GTAGAATGCACAAGCCAGGGATCGGCCCGATCCCCTCCTACGTGCTGTCGATCCTACTGTCGCAA
630 GCAGAATGCACAAGCCAGGGATCGGCCCG--CCCCTCCTACGTGCTGTCGATCCTACTGTCACAA
*
35378264 CCCTCAGTCCAGACCGATCTTAGACTGGGAATGAACTC-TGTATGCCTAAGTCAACCCATGAAAC
693 CCCTCAGTCCAGACCGATCTTAGACTGGGAATGAACTCAT-TATGCATAAGTCAACCCATGAAAC
* * * * * ***** * *
35378328 GGGCATGTGGGTGCTGAGCTGGTTGGAGAGGCATAATGCACAAGACGGGGATCAGCCCGGTCCCT
757 GAGCATGCGGGAGCTGAACCGACCAAAGAAGCATAATGCACAAGACGGGGATCAGCCCGGTCCCC
* * * *
35378393 CTCTGCGTGCTA-TCGGTCTCGCTGCCACAACCCTTGATCCAAC
822 CTCTGCGTG-TAGCCGGTCCCACTGCCACAACCCTCGATCCAAC
** * * * *
35378436 TGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGTTAACCCACGAAACGGGTGTACGAGTGC
1 TGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGCGTGCGGGTGC
* * * *
35378501 TCAACTAGCCGAAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCAGTCCGCCTTGCGTGCTATCG
66 TCAACT-GTCGGAGAGGCAGAATGCGCAAGTC-GGGATCGGCCC-GTCCCCCCTGCGTGCT-TCG
* * * * * *
35378566 AT-CTCGCTACCGTAATCCTCGGTCTAGTCTGATCTTATACTGGGAATGAACTCTATATGCTTAG
127 ATCCT-GCTGCCGCAACCCTCAGTC-AGTCTGATCTTAAACTGGGAATGAACTCTGTATGCTTAG
* * *
35378630 ACTGGGTATGAACTCCATATGCCTAAGTCAACCCAGGAAACGAGCGTGCGGGTGCTCA-GCCGA-
190 ACTGGGGATGAACTCCATATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGTGCTCATGCCGAG
35378693 CCAGAGAGGCA
255 CCAGAGAGGCA
35378704 GGATACGTAA
Statistics
Matches: 940, Mismatches: 161, Indels: 87
0.79 0.14 0.07
Matches are distributed among these distances:
864 1 0.00
865 1 0.00
868 11 0.01
869 430 0.46
870 13 0.01
871 250 0.27
872 9 0.01
873 8 0.01
875 5 0.01
876 3 0.00
878 9 0.01
879 7 0.01
880 86 0.09
881 6 0.01
882 101 0.11
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.21
Consensus pattern (864 bp):
TGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGCGTGCGGGTGC
TCAACTGTCGGAGAGGCAGAATGCGCAAGTCGGGATCGGCCCGTCCCCCCTGCGTGCTTCGATCC
TGCTGCCGCAACCCTCAGTCAGTCTGATCTTAAACTGGGAATGAACTCTGTATGCTTAGACTGGG
GATGAACTCCATATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGTGCTCATGCCGAGCCAGAG
AGGCATAATGCACAAGCAGAGGATCAGCCAAGTCCCCCTCTGCATGCTACAGATCCCACTGCCAG
TCCTGCTGCCACAACCCTCGCTCCAGCTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGC
CAACCCACGAAACGAGCGTACGACTGCTCAATCGGCCGGAAAGGCAAAATACGCAAGCCAGGGAT
CGACCCGATTCCCACTACATGCTGCCGATCCTGCTGCTCGTCCTGCTACCGGAACCCTCGATCCA
GTTCGATCTTAAACTGGGAATGAACTCCATATGCTTAGACATGAAATGAACTCCCTATGCCAAAG
CCAACCCACGAAACGACCGTACGGGCGCTCAACCGACCGAAGAGGCAGAATGCACAAGCCAGGGA
TCGGCCCGCCCCTCCTACGTGCTGTCGATCCTACTGTCACAACCCTCAGTCCAGACCGATCTTAG
ACTGGGAATGAACTCATTATGCATAAGTCAACCCATGAAACGAGCATGCGGGAGCTGAACCGACC
AAAGAAGCATAATGCACAAGACGGGGATCAGCCCGGTCCCCCTCTGCGTGTAGCCGGTCCCACTG
CCACAACCCTCGATCCAAC
Found at i:35379641 original size:26 final size:26
Alignment explanation
Indices: 35379605--35379657 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
35379595 CTGGTCTGAT
35379605 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* * *
35379631 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
35379657 C
1 C
35379658 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:35380365 original size:26 final size:26
Alignment explanation
Indices: 35380327--35380379 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
35380317 GGCTCAAAAT
35380327 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35380353 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
35380379 C
1 C
35380380 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35380563 original size:26 final size:26
Alignment explanation
Indices: 35380523--35380575 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
35380513 CCGGTCCAAT
35380523 CTTAGACTGGAAATGAACCCCGTATG
1 CTTAGACTGGAAATGAACCCCGTATG
* *
35380549 CTTAGACATGG-AATGAACTCTGTATG
1 CTTAGAC-TGGAAATGAACCCCGTATG
35380575 C
1 C
35380576 CTAACCTGAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACCCCGTATG
Found at i:35380660 original size:196 final size:197
Alignment explanation
Indices: 35380324--35380679 Score: 464
Period size: 196 Copynumber: 1.8 Consensus size: 197
35380314 CGTGGCTCAA
* *
35380324 AATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
1 AATCTTAGACTGGAAATGAACCCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
35380389 CCCATGAAACGAGTGTACGGGCGCTTAACCGATCGAAGAGGCATAATGCACAAGCCAGGGATCGG
66 CCCACGAAACGAGCGTACGAGCGCTTAACCGATCGAAGAGGCAGAATGCACAAGCCAGGGATCGA
**
35380454 CCTGGT-CCCCCCTGCATGCTGTCAATCCTATTGCTGGTCCTGCTATCGTAACCCTCGATCCGGT
131 CCCCGTCCCCCCCTGCATGCTGTCAATCCTATTGCTGGTCCTGCTATCGTAACCCTCGATCCGGT
35380518 CC
196 CC
* *
35380520 AATCTTAGACTGGAAATGAACCCCGTATGCTTAGACATGGAATGAACTCTGTATGCCTAA-CCTG
1 AATCTTAGACTGGAAATGAACCCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCC-A
* * * *** * * * ** * *
35380584 ACCCACGAAATGAGCGTGCGAGTGCTTTGTCGGTCGGAGAGGCGGAATGTGCAAGTCGGGGATCG
65 ACCCACGAAACGAGCGTACGAGCGCTTAACCGATCGAAGAGGCAGAATGCACAAGCCAGGGATCG
*
35380649 ACCCCGTCCCCCCCTGCCTGCTGTCAATCCT
130 ACCCCGTCCCCCCCTGCATGCTGTCAATCCT
35380680 GCTGCTGTAA
Statistics
Matches: 133, Mismatches: 25, Indels: 3
0.83 0.16 0.02
Matches are distributed among these distances:
195 2 0.02
196 109 0.82
197 22 0.17
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.22
Consensus pattern (197 bp):
AATCTTAGACTGGAAATGAACCCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
CCCACGAAACGAGCGTACGAGCGCTTAACCGATCGAAGAGGCAGAATGCACAAGCCAGGGATCGA
CCCCGTCCCCCCCTGCATGCTGTCAATCCTATTGCTGGTCCTGCTATCGTAACCCTCGATCCGGT
CC
Found at i:35381782 original size:26 final size:26
Alignment explanation
Indices: 35381744--35381796 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35381734 GGCTCAAAAT
*
35381744 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35381770 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
35381796 C
1 C
35381797 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35382281 original size:26 final size:26
Alignment explanation
Indices: 35382245--35382297 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
35382235 CCAGTTCAAT
35382245 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
35382271 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35382297 C
1 C
35382298 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35383970 original size:158 final size:158
Alignment explanation
Indices: 35383535--35383998 Score: 455
Period size: 158 Copynumber: 2.9 Consensus size: 158
35383525 CGAACTGGAC
* * * * * * *
35383535 CGAGGGTTGCCGCAGCAGGATCGACAGAATGTAGGGGGGACCAGGCTGATCCCCGGCTTATGCAT
1 CGAGGGTTACGGCAGCAGGATCGACAGCATGCAGGGGGGACCGGGCTGATCCCCGACTTACGCAT
* * * * * * *
35383600 TCTGCCTCTTCGGTCGACTGAGCACCCACACGCCCGTTTCATAGGTTGGCTTAGGCATAGGGAGT
66 TCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGT
* *
35383665 TCT-TTCCATATCTAAGCCCCAGTCGAAT
131 T-TATTCCATGTCTAAGCCCCAGCCGAAT
** * * * * * * * *
35383693 CGAGGGTTGTGGCAGCAGGACCAACAACATGCAGAGAGGGACCGAGCTAATCCTCGACTTGCGCA
1 CGAGGGTTACGGCAGCAGGATCGACAGCATGCAG-GGGGGACCGGGCTGATCCCCGACTTACGCA
* * * * * * * * *
35383758 TTATGCCTCTCCGGCCAGTTGAGCGTCCGAACACTCATTTCATGGGTTGACTTAGGCATACGGAG
65 TTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAG
* **** *
35383823 TTTATTCCAGGTCTAAG-ATTGGACCGGAT
130 TTTATTCCATGTCTAAGCCCCAG-CCGAAT
* * * * *
35383852 CGAGGGTTACGGTAGCAAGATCGATAGCATGCAGGGGGGATCGGGCCGATCCCCGACTTACGCAT
1 CGAGGGTTACGGCAGCAGGATCGACAGCATGCAGGGGGGACCGGGCTGATCCCCGACTTACGCAT
*
35383917 TCTGCCTCTCCAGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGT
66 TCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGT
*
35383982 TCATTCCATGTCTAAGC
131 TTATTCCATGTCTAAGC
35383999 ATACAGAGTT
Statistics
Matches: 236, Mismatches: 66, Indels: 7
0.76 0.21 0.02
Matches are distributed among these distances:
158 122 0.52
159 114 0.48
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (158 bp):
CGAGGGTTACGGCAGCAGGATCGACAGCATGCAGGGGGGACCGGGCTGATCCCCGACTTACGCAT
TCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGT
TTATTCCATGTCTAAGCCCCAGCCGAAT
Found at i:35384001 original size:26 final size:26
Alignment explanation
Indices: 35383971--35384023 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35383961 GTTGGCTTAG
*
35383971 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
35383997 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
35384023 G
1 G
35384024 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:35384197 original size:26 final size:26
Alignment explanation
Indices: 35384167--35384219 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
35384157 GTTGACTCAG
35384167 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
35384193 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
35384219 G
1 G
35384220 AACAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:35384546 original size:26 final size:26
Alignment explanation
Indices: 35384510--35384559 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
35384500 AGCTTAGGCA
35384510 TACGGAGTTCATT-CCATGTCTAAGCT
1 TACGGAGTTCATTCCCA-GTCTAAGCT
35384536 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
35384560 AGTTTGAGCC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.24, C:0.24, G:0.20, T:0.32
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCT
Found at i:35386451 original size:26 final size:26
Alignment explanation
Indices: 35386422--35386473 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
35386412 TGACTTAGGC
35386422 ATACGAAGTTCA-TCCCTAGTATAAGA
1 ATACGAAGTTCATTCCC-AGTATAAGA
* *
35386448 ATACGGAGTTCATTCCCAGTCTAAGA
1 ATACGAAGTTCATTCCCAGTATAAGA
35386474 TTAGACTGGA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.35, C:0.21, G:0.17, T:0.27
Consensus pattern (26 bp):
ATACGAAGTTCATTCCCAGTATAAGA
Found at i:35387180 original size:26 final size:26
Alignment explanation
Indices: 35387131--35387183 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
35387121 GTTGGCTTAG
*
35387131 GCATACGGAGTCCATTCTATGTCTAA
1 GCATACGGAGTCCATTCCATGTCTAA
*
35387157 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTCCATT-CCATGTCTAA
35387183 G
1 G
35387184 ATTTTGAGCT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTCCATTCCATGTCTAA
Found at i:35387889 original size:26 final size:26
Alignment explanation
Indices: 35387853--35387905 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
35387843 GTTGACTTAG
*
35387853 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
*
35387879 GCATACGAAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
35387905 G
1 G
35387906 ATTAGGACTG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:35388393 original size:26 final size:26
Alignment explanation
Indices: 35388357--35388407 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
35388347 TGGCTTAGGT
35388357 ATACGGAGTTCATTCCAAGTCTAAGC
1 ATACGGAGTTCATTCCAAGTCTAAGC
**
35388383 ATACGGAGTTCATTCCCGGTCTAAG
1 ATACGGAGTTCATTCCAAGTCTAAG
35388408 ATTTTGAGCC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATTCCAAGTCTAAGC
Found at i:35390077 original size:63 final size:63
Alignment explanation
Indices: 35390004--35390132 Score: 258
Period size: 63 Copynumber: 2.0 Consensus size: 63
35389994 TCCCCAATTT
35390004 TGGTAGAGGTGATCCTTGTAATGTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
1 TGGTAGAGGTGATCCTTGTAATGTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
35390067 TGGTAGAGGTGATCCTTGTAATGTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
1 TGGTAGAGGTGATCCTTGTAATGTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
35390130 TGG
1 TGG
35390133 AGAAGATTTT
Statistics
Matches: 66, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
63 66 1.00
ACGTcount: A:0.34, C:0.14, G:0.23, T:0.29
Consensus pattern (63 bp):
TGGTAGAGGTGATCCTTGTAATGTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
Found at i:35391338 original size:26 final size:26
Alignment explanation
Indices: 35391302--35391354 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
35391292 CCGATCCGAT
*
35391302 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
35391328 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35391354 C
1 C
35391355 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35391447 original size:343 final size:340
Alignment explanation
Indices: 35390648--35391779 Score: 1109
Period size: 355 Copynumber: 3.2 Consensus size: 340
35390638 CCGGTTTGAT
* * * * * * **
35390648 CTTAGACTGGGAATGAACTTGCGTATGCATAAGTCAACTCATGAAACAAGCGTGGGGGTGCTCAG
1 CTTAGACTGGGAATGAAC-TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * *
35390713 CCAGCCGAAGAGGTATAATGCGCAAGCTGGGGATTGGCTCGATCCCCTTCTGCGTGCTGCCGGTC
65 CCAGCCGAAGAGGCATAATGCGCAAGCTGGGGATTGGCCCGATCCCCTTCTGCGTGCTGTCGGTC
* *
35390778 CCGCTACCACAACCCTC-GTCTGGCTGGGGCTTAGACATGGAATGAAAT-CCTATGCCTAAGCCA
130 CCGCTACCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
* *** * * * *
35390841 ACCCACGAAACGGGCATGCGGGCGCTCAATAGTCAGAGAGGTAGAAT----A-CGGGGATTGGCC
195 ACCCACGAAACGGGCATGCGGGTGCTCAGCCGTCGGAGAGGAAGAATCGCAAGCGGGGATCGACC
* * * * * ** * *
35390901 TGGTCCCCCCTGGCGTGCTATCGATCTCTGCTACCGTAACCCTCGATCCGGTCTGATCTTAGACT
260 AGATCCCTCCT-GCGTGCTGTCGATC-CTACTGTCGCAACCCTCGATCCGATCTGATCTTAGACT
* *
35390966 AGGAAATGAACTCCGCATG
323 -GGAAATGAACTCTGTATG
** * *
35390985 CTTAGACTGGGTGTGAACTTCGTTATGCCTAAGTCAA-CCACGAAACGAGCGTGCGGGCACTCAA
1 CTTAGACTGGGAATGAACTCCG-TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAG
* *
35391049 CCGGCCGAAGAGGCATAATGCGCAAGCTGGGGATTGGCCTGATCCCCTTCTGCGTGCTGTCGGTC
65 CCAGCCGAAGAGGCATAATGCGCAAGCTGGGGATTGGCCCGATCCCCTTCTGCGTGCTGTCGGTC
* *
35391114 CCACTACCACAACCCTCGGTCCGGTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
130 CCGCTACCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
* * *
35391179 ACCCACGAAATGGGCATGCGGGTGCTCAGCCGATTGGAGAGGCAGAATGCGCAAGTCGGGGATCG
195 ACCCACGAAACGGGCATGCGGGTGCTCAGCCG-TCGGAGAGGAAGAAT-CGCAAG-CGGGGATCG
* *
35391244 ACCAGATCCCTCCTGCGTGCTGCCGATCCTACTGTCGCAACCCTCGATCCGATCCGATCTTAGAC
257 ACCAGATCCCTCCTGCGTGCTGTCGATCCTACTGTCGCAACCCTCGATCCGATCTGATCTTAGAC
*
35391309 TGGGAATGAACTCTGTATG
322 TGGAAATGAACTCTGTATG
* * * *
35391328 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTTAACCCACAAAATGAGCGTGCGGGCACTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGC
* * * * * * *
35391393 CGGCCGGAGAGGCATAACGCACAAGCTGAGGATTAGCCCGGTCCCCCTCTGCGTGCTGTCGATCT
66 CAGCCGAAGAGGCATAATGCGCAAGCTGGGGATTGGCCCGAT-CCCCT-T-C-TGC-GT-G--C-
* * * * * *
35391458 TTTTATCGGTCCTGCTACCTCAACCCTCGGTCCGACTAGGGCTTAGACATGGAATGAACTCCGTA
122 ---TGTCGGTCCCGCTACCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTA
** ** * *
35391523 TGCCTAAGCCAACCCACGAAACAAGTGTGCAGGTGCTCAGCCGGCCGGAGAGGAAGAATACGCAA
184 TGCCTAAGCCAACCCACGAAACGGGCATGCGGGTGCTCAGCC-GTCGGAGAGGAAGAAT-CGCAA
* * * * *
35391588 GCTAGGGATC-AGCCCGATCCCTCCTACATGTTGTCGATCCTACTGCTGGTCCTGCTACCGTAAC
247 GC-GGGGATCGA-CCAGATCCCTCCTGCGTGCTGTCGATCCTA---CT-GT-C-G----C--AAC
35391652 CCTC-AGTCC-AGTCTGATCTTAGACTGGAAATGAACTCTGTATG
298 CCTCGA-TCCGA-TCTGATCTTAGACTGGAAATGAACTCTGTATG
* * *
35391695 CTTAGAC-GTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAG
1 CTTAGACTG-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * *
35391759 CCAGTCGGAGAGGCAGAATGC
65 CCAGCCGAAGAGGCATAATGC
35391780 ATAAGCATTT
Statistics
Matches: 658, Mismatches: 95, Indels: 54
0.82 0.12 0.07
Matches are distributed among these distances:
336 99 0.15
337 57 0.09
338 42 0.06
339 12 0.02
342 13 0.02
343 94 0.14
344 38 0.06
345 13 0.02
346 19 0.03
347 3 0.00
348 2 0.00
349 1 0.00
351 1 0.00
354 2 0.00
355 139 0.21
356 1 0.00
358 2 0.00
359 2 0.00
360 1 0.00
361 1 0.00
365 1 0.00
366 3 0.00
367 112 0.17
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (340 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGC
CAGCCGAAGAGGCATAATGCGCAAGCTGGGGATTGGCCCGATCCCCTTCTGCGTGCTGTCGGTCC
CGCTACCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
CCCACGAAACGGGCATGCGGGTGCTCAGCCGTCGGAGAGGAAGAATCGCAAGCGGGGATCGACCA
GATCCCTCCTGCGTGCTGTCGATCCTACTGTCGCAACCCTCGATCCGATCTGATCTTAGACTGGA
AATGAACTCTGTATG
Found at i:35391698 original size:26 final size:26
Alignment explanation
Indices: 35391669--35391721 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35391659 CCAGTCTGAT
*
35391669 CTTAGAC-TGGAAATGAACTCTGTATG
1 CTTAGACGTGG-AATGAACTCCGTATG
35391695 CTTAGACGTGGAATGAACTCCGTATG
1 CTTAGACGTGGAATGAACTCCGTATG
35391721 C
1 C
35391722 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACGTGGAATGAACTCCGTATG
Found at i:35392227 original size:157 final size:158
Alignment explanation
Indices: 35391859--35392238 Score: 433
Period size: 157 Copynumber: 2.4 Consensus size: 158
35391849 TGTGTGCTAT
* * *
35391859 CGATCCTACTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCTTTATGACTA
1 CGATCCTACTGCCGCAACCCTCAGTCCGGTC-GATCTTAGACTAGGAATGAACTCTCTATGCCTA
* * * * * *
35391924 AGTCAACCCACGAAACGAGCGTGTAGGCGCTTAGCCGACCAGAGAGGCATAATGCGCAAGCTAGG
65 AGCCAACCCACGAAACAAGCGTGTAGGCGCTCAGCCGACCAGAGAGGCAGAATGCACAAGCCAGG
* *
35391989 GATCGACCCGGTCCTTCTCTGCATGCTGC
130 GATCGACCCAGTCCTCCTCTGCATGCTGC
* * * * ** * *
35392018 CGATCCCACTGCCACAACCCTCAGTTCGGCTAGGGCTTAGAC-ATGAATGAACTCCCTATGCCTA
1 CGATCCTACTGCCGCAACCCTCAGTCCGG-TCGATCTTAGACTAGGAATGAACTCTCTATGCCTA
* * * *
35392082 AGCCAACCCACGAAACAAGCGTGT-GGCGGTCAGCTGGCCGGAGAGGCAGAATGCACAAGCCAGG
65 AGCCAACCCACGAAACAAGCGTGTAGGCGCTCAGCCGACCAGAGAGGCAGAATGCACAAGCCAGG
* *
35392146 GATCGGCCCAGTCC-CCTCTGCGTGCTGC
130 GATCGACCCAGTCCTCCTCTGCATGCTGC
* * * * * *
35392174 TGATCCTGCTGTCGTAACCCTCGGTCCGGTTCGATCTTAGACTAGGAATGAACTCTGTATGCCTA
1 CGATCCTACTGCCGCAACCCTCAGTCCGG-TCGATCTTAGACTAGGAATGAACTCTCTATGCCTA
35392239 GACTGGGGAT
Statistics
Matches: 179, Mismatches: 40, Indels: 6
0.80 0.18 0.03
Matches are distributed among these distances:
156 42 0.23
157 63 0.35
158 39 0.22
159 34 0.19
160 1 0.01
ACGTcount: A:0.23, C:0.31, G:0.26, T:0.21
Consensus pattern (158 bp):
CGATCCTACTGCCGCAACCCTCAGTCCGGTCGATCTTAGACTAGGAATGAACTCTCTATGCCTAA
GCCAACCCACGAAACAAGCGTGTAGGCGCTCAGCCGACCAGAGAGGCAGAATGCACAAGCCAGGG
ATCGACCCAGTCCTCCTCTGCATGCTGC
Found at i:35392250 original size:26 final size:26
Alignment explanation
Indices: 35392211--35392264 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
35392201 GGTTCGATCT
35392211 TAGACTAGGAATGAACTCTGTATGCC
1 TAGACTAGGAATGAACTCTGTATGCC
* * *
35392237 TAGACTGGGGATGAACTTTGTATGCC
1 TAGACTAGGAATGAACTCTGTATGCC
35392263 TA
1 TA
35392265 AGTCAACCCA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
TAGACTAGGAATGAACTCTGTATGCC
Found at i:35392899 original size:26 final size:26
Alignment explanation
Indices: 35392839--35392900 Score: 106
Period size: 26 Copynumber: 2.4 Consensus size: 26
35392829 GCCGGTTAGG
35392839 CTCTGTATGCTTAGACATGGAATGAA
1 CTCTGTATGCTTAGACATGGAATGAA
**
35392865 CTCCATATGCTTAGACATGGAATGAA
1 CTCTGTATGCTTAGACATGGAATGAA
35392891 CTCTGTATGC
1 CTCTGTATGC
35392901 CTAAGCTAAC
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 32 1.00
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.31
Consensus pattern (26 bp):
CTCTGTATGCTTAGACATGGAATGAA
Found at i:35393072 original size:26 final size:26
Alignment explanation
Indices: 35393031--35393082 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
35393021 CCAGTTCGAT
35393031 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
35393057 CTTAGACTAGGG-ATGAACTCTGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
35393083 GCTAAGTCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35393443 original size:26 final size:26
Alignment explanation
Indices: 35393406--35393465 Score: 74
Period size: 26 Copynumber: 2.4 Consensus size: 26
35393396 TCGATTCGGT
35393406 CTCTG-AT-CTTAGAC-TGGGAATGAA
1 CTCTGTATGCTTAGACAT-GGAATGAA
35393430 CTCTGTATGCTTAGACATGGAATGAA
1 CTCTGTATGCTTAGACATGGAATGAA
35393456 CT-TCGTATGC
1 CTCT-GTATGC
35393466 CTAAGCCAAC
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
24 5 0.16
25 3 0.09
26 23 0.72
27 1 0.03
ACGTcount: A:0.27, C:0.18, G:0.23, T:0.32
Consensus pattern (26 bp):
CTCTGTATGCTTAGACATGGAATGAA
Found at i:35393644 original size:26 final size:26
Alignment explanation
Indices: 35393608--35393660 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
35393598 GTTGACTTAG
35393608 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
35393634 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
35393660 G
1 G
35393661 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:35393841 original size:26 final size:26
Alignment explanation
Indices: 35393792--35393844 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
35393782 GTTGGCTTAG
*
35393792 GCATACGGAGTTCATTCTATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
35393818 GCATATGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
35393844 G
1 G
35393845 ATCAAACCCG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:35394002 original size:26 final size:26
Alignment explanation
Indices: 35393964--35394016 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
35393954 CCCTCAAAAT
* *
35393964 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAACGAACTCCGTATG
35393990 CTTAGACAT-GGAACGAACTCCGTATG
1 CTTAGAC-TGGGAACGAACTCCGTATG
35394016 C
1 C
35394017 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAACGAACTCCGTATG
Found at i:35394485 original size:158 final size:155
Alignment explanation
Indices: 35393990--35394489 Score: 420
Period size: 158 Copynumber: 3.2 Consensus size: 155
35393980 ACTCTGTATG
* * * *
35393990 CTTAGACATGGAACGAACTCCGTATGCCTAAGCCAACCTATGAAACGAGCGTACGGGCGCTAAGT
1 CTTAGACATGGAATGAACTCCGTAT-ACTAAGCCAACCCATGAAACGAGCGTACGGGCGCTAAGC
** * * * *
35394055 CGATCGGAGAGGCAGAATGCACAAGCCGGGGAT-AGGCCCGGTCCCTCCTACATGCTGTCGATCC
65 CGATTAGAGAGGCAGAATGCGCAAGCTGGGGATCA-GCCCGGTCCCTCCTGCGTGCTGTCGATCC
* * * *
35394119 TACTTCTGCAACCCTCAATTCAGTCTGAT
129 TACTTC-GCAACCCTCAGTTGACTC-AAT
* * * * * *
35394148 CTTAGAC-TGGGAATGAACTCTGTATACATAAGTCAACCCGTGAAACAAGCGTGCGGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATAC-TAAGCCAACCCATGAAACGAGCGTACGGGCGCTAAG
* * * * * * *
35394212 CC-AGTCGAAGAGGCATAATGTGCAAGCTGGGGATC-GACCCGATCCCCCTCTGCGTGTTGTCGA
64 CCGATTAG-AGAGGCAGAATGCGCAAGCTGGGGATCAG-CCCGGTCCCTC-CTGCGTGCTGTCGA
* * * * * **
35394275 TCCCACTGCCACAACCCTCGGTGTGGCT-AGGG
126 TCCTACT-TCGCAACCCTCAGT-TGACTCA-AT
* * * * *
35394307 CTTAGACATGGAATAAACTCCCTATATCTAAGCCAACCCATGAAATG-GACGTACAGGCGCTCAG
1 CTTAGACATGGAATGAACTCCGTATA-CTAAGCCAACCCATGAAACGAG-CGTACGGGCGCTAAG
* *
35394371 CCGATTAGAGAGGCAGAATGCGTAAGCTAGGGATCAGCCCGGTCCCTCCTGCGTGCTGTCGATCC
64 CCGATTAGAGAGGCAGAATGCGCAAGCTGGGGATCAGCCCGGTCCCTCCTGCGTGCTGTCGATCC
*
35394436 TACTATCGCAACCCTCAGTCTGATTCAAT
129 TACT-TCGCAACCCTCAGT-TGACTCAAT
35394465 CTTAGAC-TGGAAATGAACTCCGTAT
1 CTTAGACATGG-AATGAACTCCGTAT
35394490 GCTTAGACTG
Statistics
Matches: 262, Mismatches: 64, Indels: 32
0.73 0.18 0.09
Matches are distributed among these distances:
157 8 0.03
158 136 0.52
159 109 0.42
160 9 0.03
ACGTcount: A:0.26, C:0.28, G:0.25, T:0.21
Consensus pattern (155 bp):
CTTAGACATGGAATGAACTCCGTATACTAAGCCAACCCATGAAACGAGCGTACGGGCGCTAAGCC
GATTAGAGAGGCAGAATGCGCAAGCTGGGGATCAGCCCGGTCCCTCCTGCGTGCTGTCGATCCTA
CTTCGCAACCCTCAGTTGACTCAAT
Found at i:35394506 original size:26 final size:26
Alignment explanation
Indices: 35394465--35394543 Score: 104
Period size: 26 Copynumber: 3.0 Consensus size: 26
35394455 CTGATTCAAT
**
35394465 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
* **
35394491 CTTAGACTGGGGATGAAATCTATATG
1 CTTAGACTGGGGATGAACTCCGTATG
*
35394517 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
35394543 C
1 C
35394544 CTAAGTCAAC
Statistics
Matches: 44, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 44 1.00
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCGTATG
Found at i:35395564 original size:26 final size:25
Alignment explanation
Indices: 35395526--35395577 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 25
35395516 TCGGTCTGAT
*
35395526 CTTAGACTAGGAATGCACTCCGTATG
1 CTTAGACTAGGAATGAACTCC-TATG
35395552 CTTAGAC-ATGGAATGAACTCCTATG
1 CTTAGACTA-GGAATGAACTCCTATG
35395577 C
1 C
35395578 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
25 6 0.25
26 18 0.75
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (25 bp):
CTTAGACTAGGAATGAACTCCTATG
Found at i:35395895 original size:158 final size:152
Alignment explanation
Indices: 35395551--35395917 Score: 382
Period size: 158 Copynumber: 2.4 Consensus size: 152
35395541 CACTCCGTAT
* * *
35395551 GCTTAGACATGGAATGAACTCCTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGTGCTCAGC
1 GCTTAGACATGGAATGAACTCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGAGATCAGC
* * * * * * *
35395616 TGGCCGAAGAGGCAGAATAAGCAAGTCAGGATCGACCCAGTCCCCTTCGTGCTGTTGATCGTGCT
66 AGGCCGAAGAGGCAGAATAAGCAAGCCAGGATCGACCCAGACCCCTACGTGCTGTCGATCCTGCC
*
35395681 ATCGCAACCCTTAGTCTGGTCTGA
131 AT--CAACCCTCAGTCTGGTCTGA
* * * *
35395705 TCTTAGAC-TGGGAATGAACTCCGACTGCCTAAGTCAACCCACGAAACGAGCGTGCGGGAGATGA
1 GCTTAGACAT-GGAATGAACTCCTA-TGCCTAAGCCAACCCACGAAACGAGCGTGCGGGAGATCA
* * ** *
35395769 GCAGGCCGGAGAGGCATAATGCGTAAGCCGAGGATCGACCC-GAACCCTTTCTACGTGCTGTCGA
64 GCAGGCCGAAGAGGCAGAATAAGCAAGCC-AGGATCGACCCAG-ACCC---CTACGTGCTGTCGA
* *
35395833 TCCACTGCCAT-AACCCTCGGTCTGGT-TGGG
124 T-C-CTGCCATCAACCCTCAGTCTGGTCT-GA
*
35395863 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGTGTGC
1 GCTTAGACATGGAATGAACT-CCTATGCCTAAGCCAACCCACGAAACGAGCGTGC
35395918 AGGCGCTCAA
Statistics
Matches: 175, Mismatches: 26, Indels: 20
0.79 0.12 0.09
Matches are distributed among these distances:
153 1 0.01
154 20 0.11
155 57 0.33
156 14 0.08
157 1 0.01
158 59 0.34
159 17 0.10
160 1 0.01
161 5 0.03
ACGTcount: A:0.26, C:0.28, G:0.27, T:0.20
Consensus pattern (152 bp):
GCTTAGACATGGAATGAACTCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGAGATCAGC
AGGCCGAAGAGGCAGAATAAGCAAGCCAGGATCGACCCAGACCCCTACGTGCTGTCGATCCTGCC
ATCAACCCTCAGTCTGGTCTGA
Found at i:35396072 original size:26 final size:26
Alignment explanation
Indices: 35396022--35396074 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
35396012 CCGATCCAAT
**
35396022 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35396048 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
35396074 C
1 C
35396075 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35396251 original size:16 final size:16
Alignment explanation
Indices: 35396230--35396266 Score: 74
Period size: 16 Copynumber: 2.3 Consensus size: 16
35396220 GTCCGACTGG
35396230 GAACTAGACAAGGAAT
1 GAACTAGACAAGGAAT
35396246 GAACTAGACAAGGAAT
1 GAACTAGACAAGGAAT
35396262 GAACT
1 GAACT
35396267 CTGTATGCCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.49, C:0.14, G:0.24, T:0.14
Consensus pattern (16 bp):
GAACTAGACAAGGAAT
Found at i:35396586 original size:182 final size:184
Alignment explanation
Indices: 35396257--35396614 Score: 440
Period size: 182 Copynumber: 2.0 Consensus size: 184
35396247 AACTAGACAA
**
35396257 GGAATGAACTCTGTATGCCTAAGCAAACCCACAAAACGAGCGTGCGGGAGCTCAGCCGGCTGGAG
1 GGAATGAACTCTCCATGCCTAAGCAAACCCACAAAACGAGCGTGCGGGAGCTCAGCCGGCTGGAG
* * * * * *
35396322 AGGCAGAATGCGTAAGCCGAGGACCAACCTAGTCCCCCCTGCGTGCTGCAGATCCTGCTGTCGCA
66 AGGCAGAATGCGCAAGCCAAGGACCAACCGAGTCCCCCCTACGTGCTGCAGATCCTGCTGCCACA
** * *
35396387 ACCCTCGGTTTGGTCTGATCTTAGACT-GGAATGAACTCCGTATGCTTAGATAT
131 ACCCTCAATTCGGTCTGATCTTAGACTGGGAATGAACGCCGTATGCTTAGATAT
* * *
35396440 GGAATGAACTC-CCATGCCTAAGCCAACCCACGAAATGAGCGTGC-GG-GCTTCCAGCCGG-TCG
1 GGAATGAACTCTCCATGCCTAAGCAAACCCACAAAACGAGCGTGCGGGAGC-T-CAGCCGGCT-G
* * * * ** *
35396501 GAGAGGTAGAATGCGCAAGTCAAGGATCGACCCGA-TCCCCCCTACGTGCTGTTGATCTTGCTGC
63 GAGAGGCAGAATGCGCAAGCCAAGGA-CCAACCGAGTCCCCCCTACGTGCTGCAGATCCTGCTGC
35396565 CACAACCCTCAATTCGGTCTGATCTTAGACTGGGAATGAACGCCGTATGC
127 CACAACCCTCAATTCGGTCTGATCTTAGACTGGGAATGAACGCCGTATGC
35396615 CAAAGTCAAC
Statistics
Matches: 148, Mismatches: 22, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
180 2 0.01
181 4 0.03
182 109 0.74
183 33 0.22
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.20
Consensus pattern (184 bp):
GGAATGAACTCTCCATGCCTAAGCAAACCCACAAAACGAGCGTGCGGGAGCTCAGCCGGCTGGAG
AGGCAGAATGCGCAAGCCAAGGACCAACCGAGTCCCCCCTACGTGCTGCAGATCCTGCTGCCACA
ACCCTCAATTCGGTCTGATCTTAGACTGGGAATGAACGCCGTATGCTTAGATAT
Found at i:35396930 original size:158 final size:156
Alignment explanation
Indices: 35396440--35396923 Score: 446
Period size: 158 Copynumber: 3.1 Consensus size: 156
35396430 GCTTAGATAT
* * *
35396440 GGAATGAACTCCC-ATGCCTAAGCCAACCCACGAAAT-GAGCGTGCGG-GCTTCCAGCCGGTCGG
1 GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATAGAGTGTGCGGCGC-T-CAGCAGCT-GG
* * * *
35396502 AGAGGTAGAATGCGCAAGTCAAGGATCGACCCGATCCCCCCTACGTGCTGTTGATCTTGCTGCCA
63 AGAGGTAGAATGCGCAAG-CCAGGATCGACCCGGTCCCCCCTACGTGCTGTCGATCCTGCTGCCA
* * * *
35396567 CAACCCTCAATTCGGTCTGATCTTAGACTG
127 CAACCCTCAGTCCGGTCAGACCTTAGACTG
* * * * * * * * * **
35396597 GGAATGAACGCCGTATGCCAAAGTCAACCCACGAAAT-GAGCGTTCGGGCACTGAGCCGGCCAGA
1 GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATAGAGTGTGC-GGCGCTCAG-CAGCTGGA
* * * * ** * *
35396661 GAGGCATAAT-CGCAAGCCAGGGATCG-GCCGGATCCCCCTCTGCGTGCTACCGGTCCCGCTGCC
64 GAGGTAGAATGCGCAAGCCA-GGATCGACCCGG-TCCCCC-CTACGTGCTGTCGATCCTGCTGCC
* *
35396724 ATAACCCTCAGTCCGG-CTAGAGCTTAGACAT-
126 ACAACCCTCAGTCCGGTC-AGACCTTAGAC-TG
35396755 GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATAG-GTGTGCAGGCGCTCAGTCAGCTGGA
1 GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATAGAGTGTGC-GGCGCTCAG-CAGCTGGA
* *
35396819 GAGGTAGAATGCACAAGCCGAGGATCGACCCGGTCCCCCCTATGTGCTGTCGATCCTGCTGCCAC
64 GAGGTAGAATGCGCAAGCC-AGGATCGACCCGGTCCCCCCTACGTGCTGTCGATCCTGCTGCCAC
* * *
35396884 AACCTTCGGTCCGGTCCGACCTTAGACTG
128 AACCCTCAGTCCGGTCAGACCTTAGACTG
35396913 GGAATGAACTC
1 GGAATGAACTC
35396924 TGTATGCTTG
Statistics
Matches: 256, Mismatches: 56, Indels: 29
0.75 0.16 0.09
Matches are distributed among these distances:
156 5 0.02
157 31 0.12
158 187 0.73
159 27 0.11
160 6 0.02
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.18
Consensus pattern (156 bp):
GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATAGAGTGTGCGGCGCTCAGCAGCTGGAGA
GGTAGAATGCGCAAGCCAGGATCGACCCGGTCCCCCCTACGTGCTGTCGATCCTGCTGCCACAAC
CCTCAGTCCGGTCAGACCTTAGACTG
Found at i:35397471 original size:26 final size:26
Alignment explanation
Indices: 35397442--35397494 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
35397432 TCGGTTCGAT
*
35397442 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
35397468 CTTAGGCTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35397494 C
1 C
35397495 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.23, C:0.19, G:0.30, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35398921 original size:171 final size:171
Alignment explanation
Indices: 35398671--35399040 Score: 442
Period size: 171 Copynumber: 2.2 Consensus size: 171
35398661 AACTCTATAT
* * * * *
35398671 GCTTAGATTAGGG-ATGAACTCTATGTGCCTAAGTCAACCCATGAAACGAGCATGTGGGCGTTCA
1 GCTTAGACT-GGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCATGTGGGCGCTCA
** * * * * * *
35398735 GTCGGCCGGAGAGGCATAATGCACAAGCCGGGGATTGGCTCGATCTCCCTCTGCGTGCTGCCGAT
65 ACCGGCCGGAGAGGCAGAATGCACAAGCCGGCGATCGGCTCGATCCCCCCCTACGTGCTGCCGAT
* * *
35398800 CCTTCTGCCGGTCCTGCTGCCACAACCCTTGGTCCGA-CTAGG
130 CCTGCTGCCGGTCCTGCTGCCACAACCCTCGGTCCGATC-AGA
*
35398842 GCTTAGACAT-GGAATGAACTCCATATGCCTAAG-CGAACCCACGAAACGAGCGTGTGGGCGCTC
1 GCTTAGAC-TGGGAATGAACTCCATATGCCTAAGTC-AACCCACGAAACGAGCATGTGGGCGCTC
* *
35398905 AACCGGCCTGAGAGGCAGAATGCACAAGCCGGCGATCGGCTCGGTCCCCCCCTACGTGCTGCCGA
64 AACCGGCCGGAGAGGCAGAATGCACAAGCCGGCGATCGGCTCGATCCCCCCCTACGTGCTGCCGA
* * * * * *
35398970 TCCTGCTGCTGGTCTTGCTGTCGCAACCCTCGGTCTGATCCGA
129 TCCTGCTGCCGGTCCTGCTGCCACAACCCTCGGTCCGATCAGA
*
35399013 TCTTAGACTGGGAATGAACTCCATATGC
1 GCTTAGACTGGGAATGAACTCCATATGC
35399041 TTATACATGG
Statistics
Matches: 168, Mismatches: 26, Indels: 10
0.82 0.13 0.05
Matches are distributed among these distances:
170 4 0.02
171 162 0.96
172 2 0.01
ACGTcount: A:0.21, C:0.30, G:0.28, T:0.21
Consensus pattern (171 bp):
GCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCATGTGGGCGCTCAA
CCGGCCGGAGAGGCAGAATGCACAAGCCGGCGATCGGCTCGATCCCCCCCTACGTGCTGCCGATC
CTGCTGCCGGTCCTGCTGCCACAACCCTCGGTCCGATCAGA
Found at i:35399386 original size:159 final size:157
Alignment explanation
Indices: 35399039--35399472 Score: 452
Period size: 157 Copynumber: 2.8 Consensus size: 157
35399029 AACTCCATAT
* * ** ***
35399039 GCTTATACATGGAAGGAACTCCGTATGCCTAAGCCAACGTACGGAACGAGCGTGTGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGGAACGAGCGTACAGGCGCTCAG
* *
35399104 TCGACCGGAGAGGCAGAATGCACAAGCTGGGGATCGGCTCGATCCCCCTGCGTGCTGTCAATCCT
66 TCGACCGGAGAGGCAGAATGCACAAGCTGGGGATCGACTCGATCCCCCTGCGTGCTGTCAATCCC
* *
35399169 GCTGCCGCAACCCTCGGTGAGGTATGA
131 GCTGCCACAACCCTCGGTCAGGTATGA
* ** *
35399196 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTGAACCCAC-GAGACGAGCGTACAGGCGCTG
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGGA-ACGAGCGTACAGGCGCTC
* * *
35399259 AGTCGACTGGAGAGGCATAATGCACAAGCTGGGGATCGACTCCG-TCCCCCTCTGCGTGCTGTCG
64 AGTCGACCGGAGAGGCAGAATGCACAAGCTGGGGATCGACT-CGAT-CCCC-CTGCGTGCTGTCA
* * *
35399323 GTCCCGCTGCCACAACCCTCGGTCCGGT-TGGG
126 ATCCCGCTGCCACAACCCTCGGTCAGGTAT-GA
* * * *
35399355 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACG-GCGT--GGGCG-TCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGGAACGAGCGTACAGGCGCTCAG
* ** * * * * * *
35399416 TCGGCCGGAGAGATAGAATGCGCAAGCCGAGGATTGGCTCGGTCCCCCTGCGTGCTG
66 TCGACCGGAGAGGCAGAATGCACAAGCTGGGGATCGACTCGATCCCCCTGCGTGCTG
35399473 CCGATCCTGC
Statistics
Matches: 229, Mismatches: 39, Indels: 22
0.79 0.13 0.08
Matches are distributed among these distances:
153 10 0.04
154 6 0.03
155 33 0.14
156 7 0.03
157 86 0.38
158 11 0.05
159 74 0.32
160 2 0.01
ACGTcount: A:0.22, C:0.29, G:0.31, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGGAACGAGCGTACAGGCGCTCAG
TCGACCGGAGAGGCAGAATGCACAAGCTGGGGATCGACTCGATCCCCCTGCGTGCTGTCAATCCC
GCTGCCACAACCCTCGGTCAGGTATGA
Found at i:35399535 original size:26 final size:26
Alignment explanation
Indices: 35399506--35399558 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
35399496 TCGATCCGAT
35399506 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
35399532 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35399558 C
1 C
35399559 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35406176 original size:26 final size:26
Alignment explanation
Indices: 35406138--35406187 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
35406128 GGCTAAAAAT
35406138 CTTAGACTGGGAATGAACTCCGTACG
1 CTTAGACTGGGAATGAACTCCGTACG
35406164 CTTAGACAT-GGAATGAACTCCGTA
1 CTTAGAC-TGGGAATGAACTCCGTA
35406188 TGCCTAAGCC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.22, G:0.24, T:0.24
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTACG
Found at i:35406459 original size:159 final size:159
Alignment explanation
Indices: 35406164--35406507 Score: 347
Period size: 159 Copynumber: 2.2 Consensus size: 159
35406154 ACTCCGTACG
* * *
35406164 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGTGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCATAAGCCAAACCATGAAACGAGCGTACGGGCGCTCAGT
* ** * * * *
35406229 CCGTCGGAGAGGCAGAATGCGCAAGCTAGGGATCGACCCGATCGCCCCCTACATGCTATCGATCT
66 CCGCCCAAGAGGCAGAATGCACAAGCGAGGGATCGACCCGATCGCCCCCTACATACTATCGATCC
**
35406294 TGCTGCCACAATCCTTGGTCTGGTCTAAT
131 CACTGCCACAATCCTTGGTCTGGTCTAAT
* * *
35406323 CTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAAACCATGAAACGAGCGTACGGGCGTTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCATAAGCCAAACCATGAAACGAGCGTACGGGCGCTCAG
* * * * * * *
35406387 -CTGACCCAAGAGGCATAATGCACAAGCCGA-GGATCGGCTCGGTC-CCCCTCTGCGTACTATCG
65 TCCG-CCCAAGAGGCAGAATGCACAAG-CGAGGGATCGACCCGATCGCCCC-CTACATACTATCG
* ** ***
35406449 ATCCCACTGCCACAACCCTCAGTCTGGT-TGGGG
127 ATCCCACTGCCACAATCCTTGGTCTGGTCT-AAT
*
35406482 CTTAGACATGGAATGAACTCCCTATG
1 CTTAGACATGGAATGAACTCCGTATG
35406508 AAGCCAACCC
Statistics
Matches: 150, Mismatches: 29, Indels: 12
0.79 0.15 0.06
Matches are distributed among these distances:
158 8 0.05
159 139 0.93
160 3 0.02
ACGTcount: A:0.25, C:0.28, G:0.25, T:0.21
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCCGTATGCATAAGCCAAACCATGAAACGAGCGTACGGGCGCTCAGT
CCGCCCAAGAGGCAGAATGCACAAGCGAGGGATCGACCCGATCGCCCCCTACATACTATCGATCC
CACTGCCACAATCCTTGGTCTGGTCTAAT
Found at i:35408719 original size:26 final size:26
Alignment explanation
Indices: 35408678--35408730 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
35408668 CCAGTTCGAT
*
35408678 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
35408704 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35408730 C
1 C
35408731 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35409636 original size:26 final size:26
Alignment explanation
Indices: 35409585--35409637 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
35409575 CTGGTTCGAT
*
35409585 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTACATATG
*
35409611 CTTAGACTAGGG-ATGAACTACGTATG
1 CTTAGACT-GGGAATGAACTACATATG
35409637 C
1 C
35409638 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACATATG
Found at i:35410138 original size:26 final size:26
Alignment explanation
Indices: 35410097--35410149 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35410087 CTAGTCTGAT
35410097 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
35410123 CTTAGACTAGGG-ATGAACTTCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
35410149 C
1 C
35410150 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35412380 original size:26 final size:26
Alignment explanation
Indices: 35412351--35412401 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
35412341 CCGGTCTGAT
35412351 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
35412377 CTTAGACTGGGGATGAACTTCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
35412402 CCCTGAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35412684 original size:196 final size:196
Alignment explanation
Indices: 35412323--35412705 Score: 466
Period size: 196 Copynumber: 2.0 Consensus size: 196
35412313 GCTACCGATC
* *
35412323 ACTGTCGCAACCCTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG
1 ACTGTCGCAACCCTCGGTCCGGTCTGATCTTAGACTGAGAATGAACTCCGTATGCTTAGACTGGG
* * * * * * * *
35412388 GATGAACTTCGTATCCCTGAGTCAACCCACGAAACAAGCGTGCGGGTGCTCAGCCGGTCGGAGAG
66 AATGAACTCCATATCCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGCTCGGAAAG
* ** **
35412453 GTAGAATGCGCAAGCCAAAAATTAGCCCAGTCCCCCCTGTGTGCTGCCGACCTTGCTGCTGGTCC
131 GCAGAATGCGCAAGCCAAAAACGAGCCCAGTCCCCCCTGCATGCTGCCGACCTTGCTGCTGGTCC
35412518 T
196 T
* *
35412519 ACTGTCGCAACCCTCGGTCCGGTCTGATCTTAGACTGAGAATGAACTCTGTATTCTTAGACAT-G
1 ACTGTCGCAACCCTCGGTCCGGTCTGATCTTAGACTGAGAATGAACTCCGTATGCTTAGAC-TGG
* * *
35412583 GAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGACT-GGAA
65 GAATGAACTCCATATCCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCG-CTCGGAA
* * ** * * * *
35412647 AGGCAGAATGCGTAAGTCAGGGACCGA-CCCGGTCCCCCCTGCATGCTGTCGATCTTGCT
129 AGGCAGAATGCGCAAGCCA-AAAACGAGCCCAGTCCCCCCTGCATGCTGCCGACCTTGCT
35412706 ACCGTAGCCC
Statistics
Matches: 156, Mismatches: 28, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
196 152 0.97
197 4 0.03
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.22
Consensus pattern (196 bp):
ACTGTCGCAACCCTCGGTCCGGTCTGATCTTAGACTGAGAATGAACTCCGTATGCTTAGACTGGG
AATGAACTCCATATCCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGCTCGGAAAG
GCAGAATGCGCAAGCCAAAAACGAGCCCAGTCCCCCCTGCATGCTGCCGACCTTGCTGCTGGTCC
T
Found at i:35413074 original size:158 final size:156
Alignment explanation
Indices: 35412572--35413074 Score: 438
Period size: 158 Copynumber: 3.2 Consensus size: 156
35412562 AACTCTGTAT
* *
35412572 TCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
1 TCTTAGAC-TGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGACGCTCAG
* * * *
35412637 CCGACTGGAA-AGGCAGAATGCGTAAGTCAGGGACCGACCCGGTCCCCCCTGCATGCTGTCGATC
65 -CGAC-CGAAGAGGCAGAATGCGTAAGTCGGGGATCGACTCGGTCCCCCCTGCATGCTGTCGATC
* * * * * *
35412701 TTGCTACCG-TAGCCCTCGATCCGGTCCAA
128 CTGCT-GCGACAACCCTCGATCCGGTTCGA
* ** * * * *
35412730 TCTTAGACCTGGAATAAACTCTGTATGCCTAAGTCAACCCACGAAACGAGTGTTCGGACACTCAG
1 TCTTAGA-CTGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGACGCTCAG
* * * * * * * * * * *
35412795 CTGGCCGGAGAAGCATAATGCGCAAGTCGAGGGTTAG-CTCGGTCCCTCTCTGCATGTTGTTGGT
65 C-GACCGAAGAGGCAGAATGCGTAAGTCG-GGGATCGACTCGGTCCC-CCCTGCATGCTGTCGAT
* ** ** * *
35412859 CCTGCTGCCACAACCCTCGATTTGACTGGG
127 CCTGCTGCGACAACCCTCGATCCGGTTCGA
* * * * * * *
35412889 GCTTAGATATGGAAAGAACTCCCTATGCCTAAGCCAACCTACGAAA-TAGGCGTGCGGATGCTCA
1 TCTTAGA-CTGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGA-GCGTGCGGACGCTCA
* * * *
35412953 GTCGACCGAAGAGGCAGAATGCGTAAGCCGGGGATCGACTTGGTCCCCCCTACGTGCTGTCGATC
64 G-CGACCGAAGAGGCAGAATGCGTAAGTCGGGGATCGACTCGGTCCCCCCTGCATGCTGTCGATC
35413018 CTGCTGCGACAACCCTCGATCCGGTTCGA
128 CTGCTGCGACAACCCTCGATCCGGTTCGA
35413047 TCTTAGACTGGGAATGAACTCCATATGC
1 TCTTAGACT-GGAATGAACTCCATATGC
35413075 TTAGACTAGG
Statistics
Matches: 258, Mismatches: 77, Indels: 20
0.73 0.22 0.06
Matches are distributed among these distances:
157 4 0.02
158 142 0.55
159 111 0.43
160 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (156 bp):
TCTTAGACTGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGACGCTCAGC
GACCGAAGAGGCAGAATGCGTAAGTCGGGGATCGACTCGGTCCCCCCTGCATGCTGTCGATCCTG
CTGCGACAACCCTCGATCCGGTTCGA
Found at i:35413099 original size:26 final size:26
Alignment explanation
Indices: 35413048--35413100 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
35413038 CCGGTTCGAT
*
35413048 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTACATATG
*
35413074 CTTAGACTAGGG-ATGAACTACGTATG
1 CTTAGACT-GGGAATGAACTACATATG
35413100 C
1 C
35413101 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACATATG
Found at i:35413933 original size:26 final size:26
Alignment explanation
Indices: 35413903--35413955 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
35413893 GTTGGCCTAG
35413903 GCATACAAAGTTCATTCC-ATGTCTAA
1 GCATACAAAGTTCATTCCTA-GTCTAA
***
35413929 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACAAAGTTCATTCCTAGTCTAA
35413955 G
1 G
35413956 ATTAGACCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.32
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCTAGTCTAA
Found at i:35414616 original size:159 final size:158
Alignment explanation
Indices: 35414380--35414799 Score: 423
Period size: 159 Copynumber: 2.6 Consensus size: 158
35414370 AGGGATTGGA
* * * * * * *
35414380 CCGATCCCCAGCTTGCGCATTCTGCCTCTCCTGCCGGTTGAGCACCCGCACGCCCATTTCATGGG
1 CCGATCCCCAGCTTGCGCATTCTGCCTCTTCTGCCGGTTGAACGCCCGTACGCTCGTTTCGTGGG
* * * * ** * *
35414445 CTGGCTTAGGCATAGGGTGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTATTGTAACG
66 TTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCAGACCGAGGGTTACGGCAACA
*
35414510 GGATCGACAGCACGCAGAGG-GGGACCAGG
131 CGATCGACAGCA--CAGAGGTGGGACCAGG
* * * * * *
35414539 CCGATCCCCAGCTTGCGCATTATGCCTCTTCAGTCGGCTCAACGCCCGTACACTCGTTTCGTGGG
1 CCGATCCCCAGCTTGCGCATTCTGCCTCTTCTGCCGGTTGAACGCCCGTACGCTCGTTTCGTGGG
* * **** * * *
35414604 TTGACTTAGGCATACGGAGTTCATTCCCA-ATCTAAGAGTGAACCAGACTGAGGGTTGCGGCAGC
66 TTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAACCAGACCGAGGGTTACGGCAAC
* *
35414668 ACGATCGACAGCACATAGGTGGGACCGGG
130 ACGATCGACAGCACAGAGGTGGGACCAGG
* ** * * *
35414697 TCGATCCCCCAGCTTAAGCATTCTGCCTC-TCTGGCAGGTTGAATGCCCGTACGCTCGTTTTGTG
1 CCGAT-CCCCAGCTTGCGCATTCTGCCTCTTCT-GCCGGTTGAACGCCCGTACGCTCGTTTCGTG
35414761 GGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
64 GGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
35414800 ATACGGAGTT
Statistics
Matches: 208, Mismatches: 48, Indels: 10
0.78 0.18 0.04
Matches are distributed among these distances:
157 5 0.02
158 17 0.08
159 183 0.88
160 3 0.01
ACGTcount: A:0.19, C:0.29, G:0.28, T:0.24
Consensus pattern (158 bp):
CCGATCCCCAGCTTGCGCATTCTGCCTCTTCTGCCGGTTGAACGCCCGTACGCTCGTTTCGTGGG
TTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCAGACCGAGGGTTACGGCAACA
CGATCGACAGCACAGAGGTGGGACCAGG
Found at i:35414801 original size:26 final size:26
Alignment explanation
Indices: 35414772--35414824 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
35414762 GTTGGCTTAG
35414772 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
35414798 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
35414824 G
1 G
35414825 ATTTGAGCCA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:35415314 original size:26 final size:26
Alignment explanation
Indices: 35415276--35415328 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35415266 GTCGGGTTAG
35415276 GCATACGGAGTTCA-TTCCATGTCTAA
1 GCATACGGAGTTCATTTCCA-GTCTAA
*
35415302 GCATACGGGGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTTCCAGTCTAA
35415328 G
1 G
35415329 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTTCCAGTCTAA
Found at i:35415509 original size:26 final size:26
Alignment explanation
Indices: 35415475--35415524 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
35415465 GGCTTAGGCG
35415475 TACGAAGTTCATT-CCATGTCTAAGCA
1 TACGAAGTTCATTCCCA-GTCTAAGCA
*
35415501 TACGGAGTTCATTCCCAGTCTAAG
1 TACGAAGTTCATTCCCAGTCTAAG
35415525 ATTTTGAGCC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (26 bp):
TACGAAGTTCATTCCCAGTCTAAGCA
Found at i:35416230 original size:26 final size:26
Alignment explanation
Indices: 35416194--35416246 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
35416184 GTTGACTTAG
35416194 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* * *
35416220 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
35416246 G
1 G
35416247 ATCGGACCAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:35417237 original size:26 final size:26
Alignment explanation
Indices: 35417201--35417253 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
35417191 GTTGACTTAG
* *
35417201 GCATATGGAGTTCATACCCAGTCTAA
1 GCATATAGAGTTCATACCCAGTATAA
*
35417227 GCATATAGAGTTCATTCCCAGTATAA
1 GCATATAGAGTTCATACCCAGTATAA
35417253 G
1 G
35417254 ATCAGACCAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATATAGAGTTCATACCCAGTATAA
Found at i:35418105 original size:26 final size:26
Alignment explanation
Indices: 35418076--35418128 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
35418066 GTTGACTTAG
35418076 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
35418102 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
35418128 G
1 G
35418129 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:35420244 original size:25 final size:26
Alignment explanation
Indices: 35420216--35420267 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
35420206 CCTATCTAAT
35420216 CTTAGACT-GGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCTATATG
*
35420241 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTATATG
35420267 C
1 C
35420268 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 8 0.32
26 17 0.68
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTATATG
Found at i:35421476 original size:158 final size:158
Alignment explanation
Indices: 35420933--35421752 Score: 551
Period size: 158 Copynumber: 5.2 Consensus size: 158
35420923 CGTGGCTCAA
* * *
35420933 AATCTAAGACTGGGAATGAACTCTGTATGCCTAAG-CTAACCCACGAAACGAGCGTGC-AGCTGC
1 AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC-AACCCACGAAACGAGCGTGCGGGC-GC
* * * * * * * * * * *
35420996 TTAACTG-GCTAGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCAATCCCCCCTGCGTTCTATC
64 TGAGCCGATC-CGAGAGGCAGAATGCCCAAGCCGAGGATCGGCCCGATCCCCCCTGCGTGCTGTC
*
35421060 GATCCTGCTGCCGTAACCCTCGGTCCGATCT
128 GATCCTGCTGCCGAAACCCTCGGTCCGATCT
* ** ** * * * * *
35421091 GATCTTAGACTGGGAATGAACT-CGTATGTGTTCGTCAACCCACGAAATGGGTGTGCAGGTGCTG
1 AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTG
* * * ** * *
35421155 GGCCGATCGGAGAGTCTTAATGCCCAAGCCGGGGATCGGCCCGGA-CCCCCTCTACGTGCTGTCG
66 AGCCGATCCGAGAGGCAGAATGCCCAAGCCGAGGATCGGCCC-GATCCCCC-CTGCGTGCTGTCG
* ** * * *
35421219 GTCCCACTGCC-ACAACCCTCAGTTCG-GCT
129 ATCCTGCTGCCGA-AACCCTCGGTCCGATCT
** * * * * *
35421248 AGGGCTTAGA-TATGGAATGAACTCTC-TATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTG
1 A-ATCTTAGACT-GGGAATGAACTC-CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
* * *
35421311 CTCAGCCGATCCGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGATCCCCCCTGCATGCTGTC
63 CTGAGCCGATCCGAGAGGCAGAATGCCCAAGCCGAGGATCGGCCCGATCCCCCCTGCGTGCTGTC
* * * *
35421376 GATCTTGCTACCGAAACCCTTGGTCCGATCC
128 GATCCTGCTGCCGAAACCCTCGGTCCGATCT
* *
35421407 AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGCGCTG
1 AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTG
* * *
35421472 AGCCGA-CCAGAGAGGCATAATGCCCAAGCCGAGGATCGGCCCGATCCCCCTCT-AGTGCTG-CC
66 AGCCGATCC-GAGAGGCAGAATGCCCAAGCCGAGGATCGGCCCGATCCCCC-CTGCGTGCTGTCG
* * *
35421534 AGTCCTGCTACC-ACAACCCTCAGTCCCA-CT
129 A-TCCTGCTGCCGA-AACCCTCGGTCCGATCT
*** * * * * * * * * *
35421564 GGGGCTTGGACAT-GAAATGAACTCCCTATGCCTAAGCCAACCCATGAAAAGGGCATACGGGCGC
1 -AATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGC
* * * * * ** * * * ** *
35421628 TCAACCGATCGGAGAGGTAGAAAGCGTAAGCC-AGGGATCAGCTCGGTCCCCCCTATGTGCT-AC
64 TGAGCCGATCCGAGAGGCAGAATGCCCAAGCCGA-GGATCGGCCCGATCCCCCCTGCGTGCTGTC
* * *
35421691 TGATCCTGCTGTC-ACAACCCTCTGTCCGGTCT
128 -GATCCTGCTGCCGA-AACCCTCGGTCCGATCT
*
35421723 AATCTTAGACTAGGAATGAACTCCGTATGC
1 AATCTTAGACTGGGAATGAACTCCGTATGC
35421753 TTAGACTGGG
Statistics
Matches: 512, Mismatches: 122, Indels: 56
0.74 0.18 0.08
Matches are distributed among these distances:
157 76 0.15
158 354 0.69
159 81 0.16
160 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (158 bp):
AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTG
AGCCGATCCGAGAGGCAGAATGCCCAAGCCGAGGATCGGCCCGATCCCCCCTGCGTGCTGTCGAT
CCTGCTGCCGAAACCCTCGGTCCGATCT
Found at i:35421550 original size:316 final size:317
Alignment explanation
Indices: 35420945--35421752 Score: 898
Period size: 316 Copynumber: 2.6 Consensus size: 317
35420935 TCTAAGACTG
* * * * * * * * *
35420945 GGAATGAACTCTGTATGCCTAAGCTAACCCACGAAACGAGCGTGCAGCTGCTTAACTG-GCTAGA
1 GGAATGAACTCTCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCAACCGATC-AGA
* * * * * *
35421009 GAGGTAGAATGCGCAAGCCGGGGATCGGCCCAATCCCCCCTGCGTTCTATCGATCCTGCTGCCGT
65 GAGGTAGAATGCGCAAGCCGAGGATCGGCCCGATCCCCCCTGCATGCTGTCGATCCTGCTGCCGA
* * ** **
35421074 AACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACT-CGTATGTGTTCGTCAACCCACGAAA
130 AACCCTTGGTCCGATCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
* * * * * * * * * *
35421138 TGGGTGTGCAGGTGCTGGGCCGATCGGAGAGTCTTAATGCCCAAGCCGGGGATCGGCCCGGACCC
195 TGAGCGTACAGGCGCTGAGCCGACCAGAGAGGCATAATGCCCAAGCCGAGGATCGGCCCGGACCC
* * * * ** *
35421203 CCTCTACGTGCTGTCGGTCCCACTGCCACAACCCTCAGTTCGGCTAGGGCTTAGATAT
260 CCTCTACGTGCTGCCAGTCCCACTACCACAACCCTCAGTCCCACTAGGGCTTAGACAT
* *
35421261 GGAATGAACTCTCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCAGCCGATCCGAG
1 GGAATGAACTCTCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCAACCGATCAGAG
* * *
35421326 AGGCAGAATGCGCAAGCCGAGGATCGGCCCGATCCCCCCTGCATGCTGTCGATCTTGCTACCGAA
66 AGGTAGAATGCGCAAGCCGAGGATCGGCCCGATCCCCCCTGCATGCTGTCGATCCTGCTGCCGAA
*
35421391 ACCCTTGGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAT
131 ACCCTTGGTCCGATCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAT
*
35421456 GAGCGTACGGGCGCTGAGCCGACCAGAGAGGCATAATGCCCAAGCCGAGGATCGGCCC-GATCCC
196 GAGCGTACAGGCGCTGAGCCGACCAGAGAGGCATAATGCCCAAGCCGAGGATCGGCCCGGA-CCC
** * *
35421520 CCTCTA-GTGCTGCCAGTCCTGCTACCACAACCCTCAGTCCCACTGGGGCTTGGACAT
260 CCTCTACGTGCTGCCAGTCCCACTACCACAACCCTCAGTCCCACTAGGGCTTAGACAT
* * * * * * *
35421577 GAAATGAACTCCCTATGCCTAAGCCAACCCATGAAAAGGGCATACGGGCGCTCAACCGATCGGAG
1 GGAATGAACTCTCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCAACCGATCAGAG
* * * * * *
35421642 AGGTAGAAAGCGTAAGCC-AGGGATCAGCTCGGTCCCCCCT--ATG-TGCTACTGATCCTGCTGT
66 AGGTAGAATGCGCAAGCCGA-GGATCGGCCCGATCCCCCCTGCATGCTG-T-C-GATCCTGCTGC
* *
35421703 C-ACAACCCTCT-GTCCGGTCTAATCTTAGACTAGGAATGAACTCCGTATGC
127 CGA-AACCCT-TGGTCCGATCTAATCTTAGACTGGGAATGAACTCCGTATGC
35421753 TTAGACTGGG
Statistics
Matches: 414, Mismatches: 69, Indels: 18
0.83 0.14 0.04
Matches are distributed among these distances:
313 2 0.00
314 4 0.01
315 3 0.01
316 325 0.79
317 80 0.19
ACGTcount: A:0.23, C:0.31, G:0.26, T:0.20
Consensus pattern (317 bp):
GGAATGAACTCTCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCAACCGATCAGAG
AGGTAGAATGCGCAAGCCGAGGATCGGCCCGATCCCCCCTGCATGCTGTCGATCCTGCTGCCGAA
ACCCTTGGTCCGATCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAT
GAGCGTACAGGCGCTGAGCCGACCAGAGAGGCATAATGCCCAAGCCGAGGATCGGCCCGGACCCC
CTCTACGTGCTGCCAGTCCCACTACCACAACCCTCAGTCCCACTAGGGCTTAGACAT
Found at i:35421755 original size:26 final size:26
Alignment explanation
Indices: 35421726--35421778 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
35421716 CCGGTCTAAT
35421726 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* * *
35421752 CTTAGACTGGGGATGAGCTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
35421778 C
1 C
35421779 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:35424019 original size:277 final size:277
Alignment explanation
Indices: 35423504--35424028 Score: 639
Period size: 278 Copynumber: 1.9 Consensus size: 277
35423494 TCTGATCTTA
* * ** *
35423504 GACTAGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACAAGCGTGTGGGCGTTGAGCCAGC
1 GACTAGGAATGAACTCCGTATGCATAAGTCAACCCAAGAAACAAGCGTGTGAGCACTAAGCCAGC
* * * *
35423569 TGAAGAGGCATAATGCGTAAGCTAGGGATCGACCCGATCCCCCTCTGCGTGCTGCCAGTCCCGCT
66 CGAAGAGGCATAATGCGCAAGCTAGGGATCGACCCGATCCCCCTCTACGTGCTACCAGTCCCGCT
* * * * *
35423634 GCCATAACCCTCGGTCCGATTGGGGCTTAGACACGGAATGAACTCCCTACGCCTAAGCCAACCCA
131 GCCACAACCCTCGATCCGACTGGCGCTTAGACACGGAATGAACTCCCTACGCCTAAACCAACCCA
* * *
35423699 CGAAATGAGCGTGCGGGTCATCAGTTGGTCGAAAAGGCAGAATGCGCAAGCCGGGGACCAACCCT
196 CGAAACGAGCGTGCGGGTCATCAGTCGGCCGAAAA-GCAGAATGCGCAAGCCGGGGACCAACCCT
35423764 CGGTCCAGTCCAAACTTT
260 CGGTCCAGTCCAAACTTT
* * *
35423782 GACTAGGAATGAACTCCGTATGCCTAAGTCAACCCAAGAAACGAGCGT-TCGAGCACTAAGCCGG
1 GACTAGGAATGAACTCCGTATGCATAAGTCAACCCAAGAAACAAGCGTGT-GAGCACTAAGCCAG
* * * * * * *
35423846 CCGGAGAGGCATACTGCGCAAGCT-GAGGATC-AGCCTGGTCCCTCTCTACGTGCTATCAGTCCT
65 CCGAAGAGGCATAATGCGCAAGCTAG-GGATCGA-CCCGATCCCCCTCTACGTGCTACCAGTCCC
* * *
35423909 G-TGCCACAACCCTCGATCCGGCTGGCGCTTAGACATGGAATGAACTCCCTATGCCTAAACCAAC
128 GCTGCCACAACCCTCGATCCGACTGGCGCTTAGACACGGAATGAACTCCCTACGCCTAAACCAAC
* * * *
35423973 CCACGAAACGGGCGTGTGGG-CGCTCAGTCGGCCAGAGACA-CAGAATGCGCAAGCCG
193 CCACGAAACGAGCGTGCGGGTC-ATCAGTCGGCC-GA-AAAGCAGAATGCGCAAGCCG
35424029 AGGATGGGCT
Statistics
Matches: 207, Mismatches: 34, Indels: 13
0.81 0.13 0.05
Matches are distributed among these distances:
276 1 0.00
277 99 0.48
278 105 0.51
279 2 0.01
ACGTcount: A:0.26, C:0.30, G:0.27, T:0.17
Consensus pattern (277 bp):
GACTAGGAATGAACTCCGTATGCATAAGTCAACCCAAGAAACAAGCGTGTGAGCACTAAGCCAGC
CGAAGAGGCATAATGCGCAAGCTAGGGATCGACCCGATCCCCCTCTACGTGCTACCAGTCCCGCT
GCCACAACCCTCGATCCGACTGGCGCTTAGACACGGAATGAACTCCCTACGCCTAAACCAACCCA
CGAAACGAGCGTGCGGGTCATCAGTCGGCCGAAAAGCAGAATGCGCAAGCCGGGGACCAACCCTC
GGTCCAGTCCAAACTTT
Found at i:35424120 original size:158 final size:157
Alignment explanation
Indices: 35423757--35424120 Score: 353
Period size: 158 Copynumber: 2.3 Consensus size: 157
35423747 AGCCGGGGAC
* * * **
35423757 CAACCCTCGGTCCAGTCCAAACTTTGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCAAGAA
1 CAACCCTCGGTCCGGTCC-GACTTAGACTAGGAATGAACTCCGTATGCCTAAACCAACCCAAGAA
* ** * * * *
35423822 ACGAGCGTTCGAGCACTAAGCCGGCCGGAGAGGCATACTGCGCAAGCTGAGGATCAGCCTGGTCC
65 ACGAGCGTTCGAGCACTAAGCCGGCCAGAGACACAGAATGCGCAAGCCGAGGATCAGCCTGATCC
* *
35423887 CTCTCTACGTGCTATCAGTCCTGTGCCA
130 CTCCCTACGTGCTATCAGTCCTCTGCCA
* * * *
35423915 CAACCCTCGATCCGGCTGGCG-CTTAGAC-ATGGAATGAACTCCCTATGCCTAAACCAACCCACG
1 CAACCCTCGGTCCGG-T-CCGACTTAGACTA-GGAATGAACTCCGTATGCCTAAACCAACCCAAG
* * * * * * *
35423978 AAACGGGCGTGT-GGGCGCTCAGTCGGCCAGAGACACAGAATGCGCAAGCCGAGGAT-GGGCTCG
63 AAACGAGCGT-TCGAGCACTAAGCCGGCCAGAGACACAGAATGCGCAAGCCGAGGATCAGCCT-G
* *
35424041 ATCCC-CCCTACGTGCTATC-GATCCTACTGTCG
126 ATCCCTCCCTACGTGCTATCAG-TCCT-CTGCCA
*
35424073 CAACCCTCGGTCCGGTCCGATCTTAGACTAGGAATGAACTTCGTATGC
1 CAACCCTCGGTCCGGTCCGA-CTTAGACTAGGAATGAACTCCGTATGC
35424121 TTAGACTGGG
Statistics
Matches: 165, Mismatches: 31, Indels: 20
0.76 0.14 0.09
Matches are distributed among these distances:
156 3 0.02
157 22 0.13
158 136 0.82
159 3 0.02
160 1 0.01
ACGTcount: A:0.24, C:0.32, G:0.25, T:0.19
Consensus pattern (157 bp):
CAACCCTCGGTCCGGTCCGACTTAGACTAGGAATGAACTCCGTATGCCTAAACCAACCCAAGAAA
CGAGCGTTCGAGCACTAAGCCGGCCAGAGACACAGAATGCGCAAGCCGAGGATCAGCCTGATCCC
TCCCTACGTGCTATCAGTCCTCTGCCA
Found at i:35424135 original size:26 final size:26
Alignment explanation
Indices: 35424094--35424146 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
35424084 CCGGTCCGAT
*
35424094 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
35424120 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
35424146 C
1 C
35424147 CTAAGTCAAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:35424248 original size:184 final size:183
Alignment explanation
Indices: 35423935--35424611 Score: 696
Period size: 184 Copynumber: 3.6 Consensus size: 183
35423925 TCCGGCTGGC
* ** *
35423935 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAACCAACCCACGAAACGGGCGTGTGGGCGCTCA
1 GCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTCA
* * ** * * * * *
35423999 GTCGGCCAGAGACACAGAATGCGCAAGCCGAGGATGGGCTCGATCCCCCCTACGTGCTATCGATC
65 G-CCGACAGAGAGGCAGAATGCACAAGCCGAGGATCGGCTCGGTCCCCCCTGCGTGCTGTCGATC
*
35424064 CTACTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTAGGAATGAACTTCGTAT
129 CTACTGTCGCAACCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTTCGTAT
* * *
35424119 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAAGCCACGAAACGAGCGTGTGGGCGCTCAA
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTCAG
* * *
35424184 CCAGTCAGAGAGGCAGAATGCACAAGCCGGGGATCGAC-CTGGTCCCCCCTGCGTGCTGTCGATC
66 CC-GACAGAGAGGCAGAATGCACAAGCCGAGGATCGGCTC-GGTCCCCCCTGCGTGCTGTCGATC
* * * *
35424248 CTACTATCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTTCGCAT
129 CTACTGTCGCAACCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTTCGTAT
* * * * *
35424303 GCTTAGACTGGGGATGAACTCCGTGTGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTCAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTCAG
* * * *
35424368 CCGACTGGAGAGGTAGAATGCACAAGCCGAGGATCGGCTCGGTCCCCCCTGCGGGCTGTCAATCC
66 CCGAC-AGAGAGGCAGAATGCACAAGCCGAGGATCGGCTCGGTCCCCCCTGCGTGCTGTCGATCC
* * *
35424433 TACTGCTGGTCCTGCTATCACAACCCTCGGTCTGGTCTAATCTTAGA-TAGGGAATGAACTCCGT
130 TA---CT-GT-C-G------CAACCCTCGGTCCGGTCTGATCTTAGACTA-GGAATGAACTTCGT
35424497 AT
182 AT
** * * * ** * *
35424499 GCTTAGACACGGAATGAACTCCGCATGCCTAAGTCAATCCACGAAACGAGCATCCGGGTGCTTAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTCAG
* ** * *
35424564 CCGATC-GAAGAGGCAGAATACGTAAGCCGAGGATCGGCACGATCCCCC
66 CCGA-CAG-AGAGGCAGAATGCACAAGCCGAGGATCGGCTCGGTCCCCC
35424612 TCTGTGTGTT
Statistics
Matches: 412, Mismatches: 61, Indels: 28
0.82 0.12 0.06
Matches are distributed among these distances:
183 5 0.01
184 269 0.65
185 1 0.00
187 2 0.00
188 1 0.00
189 1 0.00
195 2 0.00
196 130 0.32
197 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.19
Consensus pattern (183 bp):
GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTCAG
CCGACAGAGAGGCAGAATGCACAAGCCGAGGATCGGCTCGGTCCCCCCTGCGTGCTGTCGATCCT
ACTGTCGCAACCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTTCGTAT
Found at i:35424512 original size:26 final size:26
Alignment explanation
Indices: 35424474--35424526 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
35424464 CTGGTCTAAT
* * *
35424474 CTTAGATAGGGAATGAACTCCGTATG
1 CTTAGACACGGAATGAACTCCGCATG
35424500 CTTAGACACGGAATGAACTCCGCATG
1 CTTAGACACGGAATGAACTCCGCATG
35424526 C
1 C
35424527 CTAAGTCAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.25, T:0.23
Consensus pattern (26 bp):
CTTAGACACGGAATGAACTCCGCATG
Found at i:35424593 original size:196 final size:196
Alignment explanation
Indices: 35424246--35424611 Score: 484
Period size: 196 Copynumber: 1.9 Consensus size: 196
35424236 GTGCTGTCGA
* *
35424246 TCCTACTATCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTTCGCATGCTTAGAC
1 TCCTACTATCACAACCCTCGGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGCATGCTTAGAC
** * ** * * * *
35424311 TGGGGATGAACTCCGTGTGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTCAGCCGACTGG
66 ACGGAATGAACTCCGCATGCCTAAGTCAACCCACGAAACGAGCATCCGGGCACTCAGCCGACTGA
* * * *
35424376 AGAGGTAGAATGCACAAGCCGAGGATCGGCTCGGTCCCCCCTGCGGGCTGTCAATCCTACTGCTG
131 AGAGGCAGAATACACAAGCCGAGGATCGGCACGATCCCCCCTGCGGGCTGTCAATCCTACTGCTG
35424441 G
196 G
* * *
35424442 TCCTGCTATCACAACCCTCGGTCTGGTCTAATCTTAGA-TAGGGAATGAACTCCGTATGCTTAGA
1 TCCTACTATCACAACCCTCGGTCCGGTCTAATCTTAGACT-GGGAATGAACTCCGCATGCTTAGA
* ** *
35424506 CACGGAATGAACTCCGCATGCCTAAGTCAATCCACGAAACGAGCATCCGGGTGCTTAGCCGA-TC
65 CACGGAATGAACTCCGCATGCCTAAGTCAACCCACGAAACGAGCATCCGGGCACTCAGCCGACT-
**
35424570 GAAGAGGCAGAATACGTAAGCCGAGGATCGGCACGATCCCCC
129 GAAGAGGCAGAATACACAAGCCGAGGATCGGCACGATCCCCC
35424612 TCTGTGTGTT
Statistics
Matches: 144, Mismatches: 24, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
195 2 0.01
196 142 0.99
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (196 bp):
TCCTACTATCACAACCCTCGGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGCATGCTTAGAC
ACGGAATGAACTCCGCATGCCTAAGTCAACCCACGAAACGAGCATCCGGGCACTCAGCCGACTGA
AGAGGCAGAATACACAAGCCGAGGATCGGCACGATCCCCCCTGCGGGCTGTCAATCCTACTGCTG
G
Found at i:35427216 original size:159 final size:158
Alignment explanation
Indices: 35426852--35427265 Score: 401
Period size: 159 Copynumber: 2.6 Consensus size: 158
35426842 CCCGCTATCG
* * * *
35426852 ATCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATAAACTCCGTATGCCTAAG
1 ATCCCGCTGCCACAACCCTCAGTCCG-TTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAG
* * * ** *
35426917 CTAACCCACGAAATGAGCGTGCGGGCACTCAACTGGCCGGAGAGGCAGAATGTGCAAGCCGGGGG
65 CTAACCCATGAAATGAGTGTGCGGGCACTCAACTGGCCGAAGAGGCAGAATGCACAAGCCGGGGA
35426982 CCGGCCCGATCCCCTCTTGCGTGCTGTCA
130 CCGGCCCGATCCCCTCTTGCGTGCTGTCA
** * * ** * * * *
35427011 ATCTTGCTACCGA-AACCCTCGATGT-GGTCT--AACATTAGA-TTAGGAATGAACTCAGTCTAC
1 ATCCCGCTGCC-ACAACCCTC-A-GTCCGT-TGGGGC-TTAGACAT-GGAATGAACTCCGTATGC
* * * *
35427071 CTAAGTTAACCCATGAAACGAGTGTGCGGGCACT-AAGCTGGCCGAAGAGGCATAATGCACAAGT
60 CTAAGCTAACCCATGAAATGAGTGTGCGGGCACTCAA-CTGGCCGAAGAGGCAGAATGCACAAGC
* *
35427135 CGGGGATCGGCTCGATCCCC-CTCTGCGTGCTGTCA
124 CGGGGACCGGCCCGATCCCCTCT-TGCGTGCTGTCA
* * *
35427170 GTCCCGCTGCCACAACCCTCAGTCCAGTTGGGGCTTAGACATGGAATGAAGTCCCTATGCCTAAG
1 ATCCCGCTGCCACAACCCTCAGTCC-GTTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAG
* * *
35427235 CCAACCCATGAAATGGGTGTGCGGGCGCTCA
65 CTAACCCATGAAATGAGTGTGCGGGCACTCA
35427266 GTCGATCGGA
Statistics
Matches: 198, Mismatches: 42, Indels: 29
0.74 0.16 0.11
Matches are distributed among these distances:
157 2 0.01
158 9 0.05
159 179 0.90
160 6 0.03
161 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (158 bp):
ATCCCGCTGCCACAACCCTCAGTCCGTTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGC
TAACCCATGAAATGAGTGTGCGGGCACTCAACTGGCCGAAGAGGCAGAATGCACAAGCCGGGGAC
CGGCCCGATCCCCTCTTGCGTGCTGTCA
Found at i:35427313 original size:318 final size:324
Alignment explanation
Indices: 35426716--35427313 Score: 728
Period size: 318 Copynumber: 1.8 Consensus size: 324
35426706 CGATCCGATC
* * * ** *
35426716 TTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGCC
1 TTAGATTAGGAATGAACTCAGTATACCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTAAGCC
** * *
35426781 GACCGAAGAGGCATAATGTGCATGCCGGGGATCAGTTGATCCCCCTCTGCGTGCTGCTGATCCCG
66 GACCGAAGAGGCATAATGCACAAGCCGGGGATCAGTCGATCCCCCTCTGCG-GCTGCTGAT--C-
* * *
35426846 CTATCGATCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATAAACTCCGTATG
127 CTA-CGATCCCGCTGCCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATAAACTCCCTATG
* *
35426911 CCTAAGCTAACCCACGAAATGAGCGTGCGGGCACTCAACTGGCCGGAGAGGCAGAATGTGCAAGC
191 CCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAACTGACCGGAGAGGCAGAATGTGCAAGC
* *
35426976 CGGGGGCCGGCCCGATCCCCTCTTGCGTGCTGTCAATCTTGCTACCGAAACCCTCGATGTGGTCT
256 CGCGGACCGGCCCGATCCCCTCTTGCGTGCTGTCAATCTTGCTACCGAAACCCTCGATGTGGTCT
35427041 AACA
321 AACA
* * * *
35427045 TTAGATTAGGAATGAACTCAGTCTACCTAAGTTAACCCATGAAACGAGTGTGCGGGCACTAAGCT
1 TTAGATTAGGAATGAACTCAGTATACCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTAAGCC
* * *
35427110 GGCCGAAGAGGCATAATGCACAAGTCGGGGATCGGCTCGATCCCCCTCTGC-G-TGCTG-T-C-A
66 GACCGAAGAGGCATAATGCACAAGCCGGGGATCAG-TCGATCCCCCTCTGCGGCTGCTGATCCTA
* * *
35427170 -G-TCCCGCTGCCACAACCCTCAGTCC-AGTTGGGGCTTAGACATGGAATGAAGTCCCTATGCCT
130 CGATCCCGCTGCCACAACCCTCAGTCCGA-CTGGGGCTTAGACATGGAATAAACTCCCTATGCCT
* * * * * * * *
35427232 AAGCCAACCCATGAAATGGGTGTGCGGGCGCTC-AGTCGATCGGAGAGGGAGAATGTGCAAGTCG
194 AAGCCAACCCACGAAATGAGCGTGCGGGCACTCAACT-GACCGGAGAGGCAGAATGTGCAAGCCG
* *
35427296 CGGATCGGCCTGATCCCC
258 CGGACCGGCCCGATCCCC
35427314 CGGCTTGCTA
Statistics
Matches: 229, Mismatches: 37, Indels: 17
0.81 0.13 0.06
Matches are distributed among these distances:
317 3 0.01
318 118 0.52
319 1 0.00
321 1 0.00
322 1 0.00
326 1 0.00
327 5 0.02
328 1 0.00
329 84 0.37
330 14 0.06
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.20
Consensus pattern (324 bp):
TTAGATTAGGAATGAACTCAGTATACCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTAAGCC
GACCGAAGAGGCATAATGCACAAGCCGGGGATCAGTCGATCCCCCTCTGCGGCTGCTGATCCTAC
GATCCCGCTGCCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATAAACTCCCTATGCCTAA
GCCAACCCACGAAATGAGCGTGCGGGCACTCAACTGACCGGAGAGGCAGAATGTGCAAGCCGCGG
ACCGGCCCGATCCCCTCTTGCGTGCTGTCAATCTTGCTACCGAAACCCTCGATGTGGTCTAACA
Found at i:35428122 original size:26 final size:26
Alignment explanation
Indices: 35428084--35428136 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
35428074 GGCTCAAACT
*
35428084 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATAAACTCCATATG
*
35428110 CTTAGACAT-GGAATAAACTCCGTATG
1 CTTAGAC-TGGGAATAAACTCCATATG
35428136 C
1 C
35428137 CTAAGCTAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCATATG
Found at i:35429560 original size:159 final size:157
Alignment explanation
Indices: 35429152--35429560 Score: 432
Period size: 158 Copynumber: 2.6 Consensus size: 157
35429142 AACTCTATAT
* * * * *
35429152 GCTTAGACTAGGGATGAACTTCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTCAA
1 GCTTAGACT-GGAATGAACTCCGTATG-CTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * * *
35429217 CCTA-TCGAAGAGGTAGAATGCGTAAGCCGGGGATCGATTCGGTCCCCCTCTACGTGCTGTTGAT
64 CC-AGTCGAAGAGGCAGAATGCGCAAGCCAGGGATCGATTCGATCCCCCTCTACATGCTGTAGAT
*
35429281 CCTACTATCACAACCCTCGATCCAGTCGGA
128 CCCACTATCACAACCCTCGATCCAGTCGGA
* * * *
35429311 ACTTAGATTGGAATGAACTCCGTATGCTTAA-CTCAACCCATGAAACGAGCGTACGGGCGCTGAG
1 GCTTAGACTGGAATGAACTCCGTATGC-TAAGC-CAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * *
35429375 CCAGCCAAAGAGGCATAATGCACAAGCCAGGGATCG-TCTCGATCCCCCTTTACATGCTGTCAG-
64 CCAGTCGAAGAGGCAGAATGCGCAAGCCAGGGATCGAT-TCGATCCCCCTCTACATGCTGT-AGA
* * *
35429438 TCCCACTATCACAACCCTCGAT-CTGGCTGGG
127 TCCCACTATCACAACCCTCGATCCAGTC-GGA
* *
35429469 GCTTAGACATGGAATGAACTCCGTATGTCTAAGCCAACCCATGAAACGAGCGTGTGGGCACTCAG
1 GCTTAGAC-TGGAATGAACTCCGTATG-CTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * *
35429534 TCGGTCGGAGAGGCAGAATGCGCAAGC
64 CCAGTCGAAGAGGCAGAATGCGCAAGC
35429561 TGGCGATCGA
Statistics
Matches: 204, Mismatches: 37, Indels: 18
0.79 0.14 0.07
Matches are distributed among these distances:
157 6 0.03
158 120 0.59
159 76 0.37
160 2 0.01
ACGTcount: A:0.26, C:0.27, G:0.26, T:0.21
Consensus pattern (157 bp):
GCTTAGACTGGAATGAACTCCGTATGCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCC
AGTCGAAGAGGCAGAATGCGCAAGCCAGGGATCGATTCGATCCCCCTCTACATGCTGTAGATCCC
ACTATCACAACCCTCGATCCAGTCGGA
Found at i:35429955 original size:159 final size:159
Alignment explanation
Indices: 35429663--35430018 Score: 373
Period size: 159 Copynumber: 2.2 Consensus size: 159
35429653 GCTTAGACAT
* * *
35429663 GGAATGAACTGCGTATGCCTAAGCCAACCCACGAAACGAGTGTACGGGCGCTTAGCCAGCTGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTTAGCCAGCTGGAG
* * *
35429728 AGGCAGAACTCGCAAGCCAGGGACCGGTCCGATCCCCCCCCGCCTGCTGTCAATCCTGCTACTGC
66 AGGCAGAACTCGCAAGCCAGGGACCGGCCCGATCCCCCCCCGCCTGCTGCCAATCCCGCTACTGC
35429793 AACCCTCAGTCCGATCTGATCATAGATTG
131 AACCCTCAGTCCGATCTGATCATAGATTG
* * * *
35429822 GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCAC-TACGCC-GATTGG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTTA-GCCAG-CTGG
* * * * * * ** *
35429885 AGAGGCATAA-TGCGCAAGCCAGGGATCGGCCCGATCCCCCTCTGCGTTCTGCCGGTCCCGCTGC
64 AGAGGCAGAACT-CGCAAGCCAGGGACCGGCCCGATCCCCCCCCGCCTGCTGCCAATCCCGCTAC
* * * ***
35429949 -GACAACCCTCAGTCCGGT-TGGGGT-TTAGACAC
128 TG-CAACCCTCAGTCCGATCT--GATCATAGATTG
* *
35429981 GGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACG
35430019 GGGGTGCGAG
Statistics
Matches: 162, Mismatches: 29, Indels: 12
0.80 0.14 0.06
Matches are distributed among these distances:
158 6 0.04
159 154 0.95
160 2 0.01
ACGTcount: A:0.24, C:0.32, G:0.26, T:0.17
Consensus pattern (159 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTTAGCCAGCTGGAG
AGGCAGAACTCGCAAGCCAGGGACCGGCCCGATCCCCCCCCGCCTGCTGCCAATCCCGCTACTGC
AACCCTCAGTCCGATCTGATCATAGATTG
Done.