Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 391 of 402
Found at i:35430034 original size:502 final size:503
Alignment explanation
Indices: 35428587--35430523 Score: 1890
Period size: 502 Copynumber: 3.8 Consensus size: 503
35428577 CATTATGTGT
** * * * * * *
35428587 TGTCGATCCTATTGTCACAACTCTCGATCCGGTCCGATCCTAGACTGGGAATGAACTCTGTATGC
1 TGTCGATCCTGCTGTCGCAACCCTCGGTCCAGTCTGATCCTAGACTGGGAATGAACTCCGTATGC
** * * *
35428652 TTAGACATCTAATGAACTTTGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCGCTCAGCC
66 TTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAACC
* * * * * * * * * *
35428717 -GACCGGAGAGGCAGAATGCCCAAGTCGAGGACC-GACTTGGTCTCCCCCGGCGTGCTATCGATC
131 AG-CTGGAGAGGCAGAATGCGCAAGCCGGGGACCGGTCTCGGTCCCCCCCTGCGTGCTGTCAATC
** * **
35428780 CTACTATCGTAACCCTCGGT-TTGATCAT-ATCATAGACTAGGAATGAACTCCGTATGCCTAAGT
195 CTACTATCACAACCCTCGATCCAG-TC-TGATCATAGACTAGGAATGAACTCCGTATGCCTAAGT
* * * * * * * * * * * *
35428843 CAA-CC-TGCAAACCGAGCATTCGGGTGTTGAACCGGCCGGAAAGCCATAATACGCACGTCGGGG
258 CAACCCATG-AAA-CGAGCGTGCGGGCGCTGAGCCGACCGGAGAGGCATAATGCGCAAGCCAGGG
** * * * * * * *
35428906 ATCGATCTGGTCCCCCTCTACGTGCTGCCGTTCCCGCTACCACAACCATCGGTCCAACTGGGGCT
321 ATCGGCCCGATCCCCCTCTACGTGCTGCCGGTCCCGCTGCCACAACCCTCAGTCCAGCTGGGGCT
* *
35428971 TAGACATGGAATGAACTCCCTATGCTTAAGCCAACCCACCAAACGAGCGTGCGGGCACTCAGCCG
386 TAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTCAGCCG
* * * **
35429036 GCCAGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCAACGTGC
451 GCCGGAGAGGCAGAATGCGCAAGCCGGAGATCGGCCCGATCCCCCCTGCGTGC
* * * * **
35429089 TGCCGATCCTGCTGTCGCAACCCTCGGTCCTGTCCGATCTTAGACTGGGAATGAACTCTATATGC
1 TGTCGATCCTGCTGTCGCAACCCTCGGTCCAGTCTGATCCTAGACTGGGAATGAACTCCGTATGC
* * *
35429154 TTAGAC-TAGGGATGAACTTCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTCAAC
66 TTAGACAT-GGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAAC
* * * * * * * * **
35429218 CTATC-GAAGAGGTAGAATGCGTAAGCCGGGGATCGAT-TCGGTCCCCCTCTACGTGCTGTTGAT
130 C-AGCTGGAGAGGCAGAATGCGCAAGCCGGGGACCGGTCTCGGTCCCCCCCTGCGTGCTGTCAAT
* * * * * *
35429281 CCTACTATCACAACCCTCGATCCAGTCGGAACTTAGA-TTGGAATGAACTCCGTATGCTTAACTC
194 CCTACTATCACAACCCTCGATCCAGTCTGATCATAGACTAGGAATGAACTCCGTATGCCTAAGTC
* ** *
35429345 AACCCATGAAACGAGCGTACGGGCGCTGAGCC-AGCCAAAGAGGCATAATGCACAAGCCAGGGAT
259 AACCCATGAAACGAGCGTGCGGGCGCTGAGCCGA-CCGGAGAGGCATAATGCGCAAGCCAGGGAT
* * * * * * * ** **
35429409 CGTCTCGATCCCCCTTTACATGCTGTCAGTCCCACTATCACAACCCTC-GATCTGGCTGGGGCTT
323 CGGCCCGATCCCCCTCTACGTGCTGCCGGTCCCGCTGCCACAACCCTCAG-TCCAGCTGGGGCTT
* * ** * *
35429473 AGACATGGAATGAACTCCGTATGTCTAAGCCAACCCATGAAACGAGCGTGTGGGCACTCAGTCGG
387 AGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTCAGCCGG
* * * * * *
35429538 TCGGAGAGGCAGAATGCGCAAGCTGGCGATCGACCCGAACCCCCCTGTGTGC
452 CCGGAGAGGCAGAATGCGCAAGCCGGAGATCGGCCCGATCCCCCCTGCGTGC
* * **
35429590 TGTCGATCCTGCTGTCGCAACCCTCTGTCCAATCTGATCCTAGACTTTGAATGAACTCCGTATGC
1 TGTCGATCCTGCTGTCGCAACCCTCGGTCCAGTCTGATCCTAGACTGGGAATGAACTCCGTATGC
* * * * * *
35429655 TTAGACATGGAATGAACTGCGTATGCCTAAGCCAACCCACGAAACGAGTGTACGGGCGCTTAGCC
66 TTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAACC
* * * *
35429720 AGCTGGAGAGGCAGAACT-CGCAAGCCAGGGACCGGTC-CGATCCCCCCCCGCCTGCTGTCAATC
131 AGCTGGAGAGGCAGAA-TGCGCAAGCCGGGGACCGGTCTCGGTCCCCCCCTGCGTGCTGTCAATC
* * * *
35429783 CTGCTA-CTGCAACCCTC-AGTCC-GATCTGATCATAGATTGGGAATGAACTCCGTATGCCTAAG
195 CTACTATC-ACAACCCTCGA-TCCAG-TCTGATCATAGACTAGGAATGAACTCCGTATGCCTAAG
* **
35429845 TCAACCCATGAAACGAGCGTGCGGGCACT-ACGCCGATTGGAGAGGCATAATGCGCAAGCCAGGG
257 TCAACCCATGAAACGAGCGTGCGGGCGCTGA-GCCGACCGGAGAGGCATAATGCGCAAGCCAGGG
* * * * * *
35429909 ATCGGCCCGATCCCCCTCTGCGTTCTGCCGGTCCCGCTGCGACAACCCTCAGTCCGGTTGGGGTT
321 ATCGGCCCGATCCCCCTCTACGTGCTGCCGGTCCCGCTGCCACAACCCTCAGTCCAGCTGGGGCT
* * * * *
35429974 TAGACACGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGGGTGCGAGCACTCAACCG
386 TAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTCAGCCG
* ** * *
35430039 ACCGGAGAGGCAGAATAAGCAAGCCGGAAATCGGCCCGATCCCCCTTGCGTGC
451 GCCGGAGAGGCAGAATGCGCAAGCCGGAGATCGGCCCGATCCCCCCTGCGTGC
* * *
35430092 TGTCGATCCTGCTTCTGGTCCTGTTGCCGCAACCCTCGGTTCGGTCTGATCTTAGACTGGGAATG
1 TGTCGA---T-C--CT-G--CTG-T--CGCAACCCTCGGTCCAGTCTGATCCTAGACTGGGAATG
* * * * *
35430157 AACTTCGTATGCTTAGACATGGAATGAAATTCATACGCCTAAACTC-ACCCATGAAACGAGCGTG
54 AACTCCGTATGCTTAGACATGGAATGAACTTCGTATGCCTAAGC-CAACCCATGAAACGAGCGTG
* * * * *
35430221 CGGGCGCTCAACCA-ATCGGAGAGGCAGAATGTGCAAGCCGGGGATCAG-CTCGGT-GCCCCCTG
118 CGGGCGCTCAACCAGCT-GGAGAGGCAGAATGCGCAAGCCGGGGACCGGTCTCGGTCCCCCCCTG
* * * * *
35430283 CATGTTGTTAATCCTACT-GCAACAACCCTCGATCCAGTCTGATCTTAGACTAGGAATGAACTCC
182 CGTGCTGTCAATCCTACTATC-ACAACCCTCGATCCAGTCTGATCATAGACTAGGAATGAACTCC
* *
35430347 ATATGCCTAAGTCAACTCATGAAACGAGCGTGCGGGCGCTGAGCCGACCGGAGAGGCATAATGCG
246 GTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTGAGCCGACCGGAGAGGCATAATGCG
* * ** *
35430412 CAAGCCGGGGATCGGCCCGGTCCCCCTCTACGTGCTGTTGTTCCCGCTGCCACAACCCT-AGGTC
311 CAAGCCAGGGATCGGCCCGATCCCCCTCTACGTGCTGCCGGTCCCGCTGCCACAACCCTCA-GTC
*
35430476 CAG-TGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCGACCCA
375 CAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
35430524 TGAAACACAC
Statistics
Matches: 1163, Mismatches: 230, Indels: 74
0.79 0.16 0.05
Matches are distributed among these distances:
500 6 0.01
501 388 0.33
502 410 0.35
503 6 0.01
505 1 0.00
506 1 0.00
508 2 0.00
509 1 0.00
511 3 0.00
512 44 0.04
513 173 0.15
514 127 0.11
515 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (503 bp):
TGTCGATCCTGCTGTCGCAACCCTCGGTCCAGTCTGATCCTAGACTGGGAATGAACTCCGTATGC
TTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAACC
AGCTGGAGAGGCAGAATGCGCAAGCCGGGGACCGGTCTCGGTCCCCCCCTGCGTGCTGTCAATCC
TACTATCACAACCCTCGATCCAGTCTGATCATAGACTAGGAATGAACTCCGTATGCCTAAGTCAA
CCCATGAAACGAGCGTGCGGGCGCTGAGCCGACCGGAGAGGCATAATGCGCAAGCCAGGGATCGG
CCCGATCCCCCTCTACGTGCTGCCGGTCCCGCTGCCACAACCCTCAGTCCAGCTGGGGCTTAGAC
ATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTCAGCCGGCCGG
AGAGGCAGAATGCGCAAGCCGGAGATCGGCCCGATCCCCCCTGCGTGC
Found at i:35430488 original size:158 final size:158
Alignment explanation
Indices: 35430167--35430952 Score: 589
Period size: 158 Copynumber: 4.9 Consensus size: 158
35430157 AACTTCGTAT
* * * * *
35430167 GCTTAGACATGGAATGAAATTCATACGCCTAAACTC-ACCCATGAAACGAGCGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCATATGCCT-AAGTCAACCCATGAAACGAGCGTGCGGGTGCTCA
* * * * * * *
35430231 ACCAATCGGAGAGGCAGAATGTGCAAGCCGGGGATCAGCTCGGTGCCCCCTGCATGTTGTTAATC
65 ACCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCCTGCGTGCTGTCAATC
* * * * *
35430296 CTACTGCAACAACCCTCGATCCAGTCTGA
130 CTGCTGCCACAACCCTAGGTCCAGTCGGA
* * * *
35430325 TCTTAGAC-TAGGAATGAACTCCATATGCCTAAGTCAACTCATGAAACGAGCGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCA
* * * * * ***
35430389 GCCGACCGGAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTACGTGCTGTTGTT
65 ACCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGGTCCCCC-CTGCGTGCTGTCAAT
* *
35430454 CCCGCTGCCACAACCCTAGGTCCAGT-GGG
129 CCTGCTGCCACAACCCTAGGTCCAGTCGGA
* * * * *
35430483 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCGACCCATGAAAC-ACACGTGTGGGTGCTCA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGTCAACCCATGAAACGA-GCGTGCGGGTGCTCA
* * * * * *** *
35430547 ACCGATTGGAAAGGTAGAATGCGCAAGCCGGGGATCAACCCGGTCCCTCCCTACACACTATCAAT
65 ACCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGGTCCC-CCCTGCGTGCTGTCAAT
* * ** *
35430612 CCTGCTGCCATAACACCCTCGGTCTGGTCCGA
129 CCTGCTGCCA-CA-ACCCTAGGTCCAGTCGGA
* * * * * *
35430644 TCTTAGAC-TAGGAATGAAATCCGTATGCCTAAGTCAACCCATGAAATGAGCGTACGGGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCA
* * * * * * *** * ** * * **
35430708 GCCGGTTGAAGACGCATAACATGCAAGCCAGGGATTGGCTCTGTCCCCCTCTGCGTGCTGTCGGT
65 ACCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGGTCCCCC-CTGCGTGCTGTCAAT
* * * * *
35430773 CCTGCTGCGACAACCTTCA-GTCCGGTTGGG
129 CCTGCTGCCACAACCCT-AGGTCCAGTCGGA
* * * *
35430803 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAA
* * * * * *
35430868 TC-AGCCAGAGAGGTAGAATGCGCAAGCCGGGGATCTA-CCTGGTCCCCCCTGCGTGCTGTCGAT
66 CCGA-TCGGAGAGGCAGAATGCGCAAGCCGGGGATC-AGCCCGGTCCCCCCTGCGTGCTGTCAAT
* * * *
35430931 CCTACTACCGCAACCCTCGGTC
129 CCTGCTGCCACAACCCTAGGTC
35430953 TGATTCGATC
Statistics
Matches: 479, Mismatches: 132, Indels: 34
0.74 0.20 0.05
Matches are distributed among these distances:
157 6 0.01
158 228 0.48
159 129 0.27
160 16 0.03
161 99 0.21
162 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAA
CCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCCTGCGTGCTGTCAATCC
TGCTGCCACAACCCTAGGTCCAGTCGGA
Found at i:35430616 original size:513 final size:514
Alignment explanation
Indices: 35428616--35430617 Score: 1224
Period size: 501 Copynumber: 3.9 Consensus size: 514
35428606 ACTCTCGATC
* * ** * *** *
35428616 CGGTCCGATCCTAGACTGGGAATGAACTCTGTATGCTTAGACATCTAATGAACTTTGTATGCCTA
1 CGGTCTGATCCTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAAATGCATACGCCTA
* * * * * * * *
35428681 AGCCAACCCATGAAACGAGCATGCGGGCGCTCAGCC-GACCGGAGAGGCAGAA-TGCCCAAGTC-
66 AACCAACCCACGAAACGAGCGTACGGGCGCTCAACCAG-CTGGAGAGGCAGAACT-CGCAAGCCA
* * * * * * * * ** * **
35428743 GAGGACCGACT-TGGTCTCCCCCGGCGTGCTATCGATCCTACTATC-GTAACCCTCGGTTTGATC
129 G-GGACAG-CTCCGATCCCCCCCCGCATGCTGTCAATCCTACTA-CAACAACCCTCAGTCCGATC
* * * *
35428806 AT-ATCATAGACTAGGAATGAACTCCGTATGCCTAAGTCAA-CC-TGCAAACCGAGCATTCGGGT
191 -TGATCATAGACTAGGAATGAACTCCATATGCCTAAGTCAACCCATG-AAA-CGAGCGTGCGGGC
** * * * * * * * * ** * *
35428868 GTTGA-ACCGGCCGGAAAGCCATAATACGCACGTCGGGGATCGATCTGGTCCCCCTCTACGTGCT
253 ACT-ACGCCGACCGGAGAGGCATAATGCGCAAGCCAGGGATCGGCCCGATCCCCCTCTACGTGCT
* * * * ** * *
35428932 GCCGTTCCCGCTACCACAACCATCGGTCCAACTGGGGCTTAGACATGGAATGAACTCCCTATGCT
317 GCCGGTCCCGCTGCCACAACCCTCAGTCCAGTTGGGGCTTAGACACGGAATGAACTCCCTATGCC
* * * * * * * * **
35428997 TAAGCCAACCCACCAAACGA-GCGTGCGGGCACTCAGCCGGCCAGAGAGGTAGAATGCGCAAGCC
382 TAAGCCAACCCACAAAAC-ACGGGTGCGAGCACTCAACCGACCGGAAAGGCAGAATAAGCAAGCC
** ** * * * * *
35429061 GGGGATCGGCCCGAT--CCCC--C-CA--A-C-GTGCTGC--C-GATCCTGCTGTCGCAACCCTC
446 GGAAATCAACCCGATCCCCCCTACACACTATCAATCCTGCTTCTGGTCCTGTTGCCGCAACCCTC
*
35429114 GGTC
511 GGTT
* * * ** * * * * *
35429118 CTGTCCGATCTTAGACTGGGAATGAACTCTATATGCTTAGAC-TAGGGATGAACTTCGTATGCCT
1 CGGTCTGATCCTAGACTGGGAATGAACTCCGTATGCTTAGACAT-GGAATGAAATGCATACGCCT
** * * * * * * *
35429182 AAGTCAACCCATGAAATGAGCGTGCGGGCGCTCAACCTATC-GAAGAGGTAGAA-TGCGTAAGCC
65 AAACCAACCCACGAAACGAGCGTACGGGCGCTCAACC-AGCTGGAGAGGCAGAACT-CGCAAGCC
* * * * * ** * **
35429245 GGGGATC-GATTCGGTCCCCCTCTACGTGCTGTTGATCCTACTATC-ACAACCCTC-GATCC-AG
128 AGGGA-CAGCTCCGATCCCCCCCCGCATGCTGTCAATCCTACTA-CAACAACCCTCAG-TCCGA-
* * * * * * * * *
35429306 TCGGAACTTAGA-TTGGAATGAACTCCGTATGCTTAACTCAACCCATGAAACGAGCGTACGGGCG
189 TCTGATCATAGACTAGGAATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCA
** * * * * *
35429370 CTGA-GCC-AGCCAAAGAGGCATAATGCACAAGCCAGGGATCGTCTCGATCCCCCTTTACATGCT
254 CT-ACGCCGA-CCGGAGAGGCATAATGCGCAAGCCAGGGATCGGCCCGATCCCCCTCTACGTGCT
* * * ** ** * * * *
35429433 GTCAGTCCCACTATCACAACCCTC-GATCTGGCTGGGGCTTAGACATGGAATGAACTCCGTATGT
317 GCCGGTCCCGCTGCCACAACCCTCAG-TCCAGTTGGGGCTTAGACACGGAATGAACTCCCTATGC
** * ** ** * **
35429497 CTAAGCCAACCCATGAAACGAGCGTGTG-G-GCACTCAGTCGGTCGGAGAGGCAGAATGCGCAAG
381 CTAAGCCAACCCACAAAAC-A-CGGGTGCGAGCACTCAACCGACCGGAAAGGCAGAATAAGCAAG
* ** * * * * * * * *
35429560 CTGGCGATCGACCCGA---ACCC--C-C-CTGT--GTGCTG--TC-GATCCTGCTGTCGCAACCC
444 CCGGAAATCAACCCGATCCCCCCTACACACTATCAATCCTGCTTCTGGTCCTGTTGCCGCAACCC
* *
35429613 TCTGTC
509 TCGGTT
** ** * * *
35429619 CAATCTGATCCTAGACTTTGAATGAACTCCGTATGCTTAGACATGGAATGAACTGCGTATGCCTA
1 CGGTCTGATCCTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAAATGCATACGCCTA
* * * *
35429684 AGCCAACCCACGAAACGAGTGTACGGGCGCTTAGCCAGCTGGAGAGGCAGAACTCGCAAGCCAGG
66 AACCAACCCACGAAACGAGCGTACGGGCGCTCAACCAGCTGGAGAGGCAGAACTCGCAAGCCAGG
* * * * **
35429749 GACCGGTCCGATCCCCCCCCGCCTGCTGTCAATCCTGCTACTGCAACCCTCAGTCCGATCTGATC
131 GACAGCTCCGATCCCCCCCCGCATGCTGTCAATCCTACTACAACAACCCTCAGTCCGATCTGATC
* * *
35429814 ATAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTACGCC
196 ATAGACTAGGAATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTACGCC
** * *
35429879 GATTGGAGAGGCATAATGCGCAAGCCAGGGATCGGCCCGATCCCCCTCTGCGTTCTGCCGGTCCC
261 GACCGGAGAGGCATAATGCGCAAGCCAGGGATCGGCCCGATCCCCCTCTACGTGCTGCCGGTCCC
* * *
35429944 GCTGCGACAACCCTCAGTCCGGTTGGGGTTTAGACACGGAATGAACTCCCTATGCCTAAGCCAAC
326 GCTGCCACAACCCTCAGTCCAGTTGGGGCTTAGACACGGAATGAACTCCCTATGCCTAAGCCAAC
** * **
35430009 CCACAAAACGGGGGTGCGAGCACTCAACCGACCGGAGAGGCAGAATAAGCAAGCCGGAAATCGGC
391 CCACAAAACACGGGTGCGAGCACTCAACCGACCGGAAAGGCAGAATAAGCAAGCCGGAAATCAAC
* * *** * *
35430074 CCGATCCCCCTTGCGTGCTGTCGATCCTGCTTCTGGTCCTGTTGCCGCAACCCTCGGTT
456 CCGATCCCCCCTACACACTATCAATCCTGCTTCTGGTCCTGTTGCCGCAACCCTCGGTT
* * *
35430133 CGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACATGGAATGAAATTCATACGCCTA
1 CGGTCTGATCCTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAAATGCATACGCCTA
* * * *
35430198 AACTC-ACCCATGAAACGAGCGTGCGGGCGCTCAACCA-ATCGGAGAGGCAGAA-TGTGCAAGCC
66 AAC-CAACCCACGAAACGAGCGTACGGGCGCTCAACCAGCT-GGAGAGGCAGAACT-CGCAAGCC
* * * * * * *
35430260 GGGGATCAGCT-CGGT-GCCCCCTGCATGTTGTTAATCCTACTGCAACAACCCTC-GATCC-AGT
128 AGGGA-CAGCTCCGATCCCCCCCCGCATGCTGTCAATCCTACTACAACAACCCTCAG-TCCGA-T
* * *
35430321 CTGATCTTAGACTAGGAATGAACTCCATATGCCTAAGTCAACTCATGAAACGAGCGTGCGGGCGC
190 CTGATCATAGACTAGGAATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCAC
* * *
35430386 TGA-GCCGACCGGAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTACGTGCTGT
255 T-ACGCCGACCGGAGAGGCATAATGCGCAAGCCAGGGATCGGCCCGATCCCCCTCTACGTGCTGC
* * *
35430450 TGTTCCCGCTGCCACAACCCT-AGGTCCAG-TGGGGCTTAGACATGGAATGAACTCCCTATGCCT
319 CGGTCCCGCTGCCACAACCCTCA-GTCCAGTTGGGGCTTAGACACGGAATGAACTCCCTATGCCT
* * * ** ** * **
35430513 AAGCCGACCCATGAAACACACGTGTG-G-GTGCTCAACCGATTGGAAAGGTAGAATGCGCAAGCC
383 AAGCCAACCCA-CAAA-ACACGGGTGCGAGCACTCAACCGACCGGAAAGGCAGAATAAGCAAGCC
** *
35430576 GGGGATCAACCCGGTCCCTCCCTACACACTATCAATCCTGCT
446 GGAAATCAACCCGATCCC-CCCTACACACTATCAATCCTGCT
35430618 GCCATAACAC
Statistics
Matches: 1199, Mismatches: 246, Indels: 99
0.78 0.16 0.06
Matches are distributed among these distances:
500 14 0.01
501 378 0.32
502 364 0.30
503 11 0.01
505 2 0.00
507 1 0.00
509 4 0.00
511 4 0.00
512 86 0.07
513 194 0.16
514 137 0.11
515 4 0.00
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (514 bp):
CGGTCTGATCCTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAAATGCATACGCCTA
AACCAACCCACGAAACGAGCGTACGGGCGCTCAACCAGCTGGAGAGGCAGAACTCGCAAGCCAGG
GACAGCTCCGATCCCCCCCCGCATGCTGTCAATCCTACTACAACAACCCTCAGTCCGATCTGATC
ATAGACTAGGAATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTACGCC
GACCGGAGAGGCATAATGCGCAAGCCAGGGATCGGCCCGATCCCCCTCTACGTGCTGCCGGTCCC
GCTGCCACAACCCTCAGTCCAGTTGGGGCTTAGACACGGAATGAACTCCCTATGCCTAAGCCAAC
CCACAAAACACGGGTGCGAGCACTCAACCGACCGGAAAGGCAGAATAAGCAAGCCGGAAATCAAC
CCGATCCCCCCTACACACTATCAATCCTGCTTCTGGTCCTGTTGCCGCAACCCTCGGTT
Found at i:35430901 original size:320 final size:314
Alignment explanation
Indices: 35430167--35430917 Score: 833
Period size: 319 Copynumber: 2.4 Consensus size: 314
35430157 AACTTCGTAT
* * * * * *
35430167 GCTTAGACATGGAATGAAATTCATACGCCTAAACTCACCCATGAAACGAGCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGC-CACCCATGAAACGAGCGTGCGGGTGCTCAA
* * * * * * * *** * *
35430232 CCAATCGGAGAGGCAGAATGTGCAAGCCGGGGATCAGCTCGGTGCCCCCTGCATGTTGTTAATCC
65 -CAGTCGGAGAGGTAGAATGCGCAAGCCGGGGATCAACCCGGTCCCCCCTACACACTATCAATCC
* *
35430297 TACTGCAACAACCCTCGATCCAGTCTGATCTTAGACTAGGAATGAACTCCATATGCCTAAGTCAA
129 TACTGCAACAACCCTCGATCCAGTCCGATCTTAGACTAGGAATGAAATCCATATGCCTAAGTCAA
* * * * ** *
35430362 CTCATGAAACGAGCGTGCGGGCGCTGAGCCGACCGGAGAGGCATAATGCGCAAGCCGGGGATCGG
194 CCCATGAAACGAGCGTACGGGCGCTGAGCCGACCGAAGACGCATAACACGCAAGCCAGGGATCGG
* *
35430427 CCCGGTCCCCCTCTACGTGCTGTTGTTCCCGCTGCCACAACCCTAGGTCCAGTGGG
259 CCCGGTCCCCCTCTACGTGCTGTCGGTCCCGCTGCCACAACCCTAGGTCCAGTGGG
* *
35430483 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCGACCCATGAAAC-ACACGTGTGGGTGCTCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCC-ACCCATGAAACGA-GCGTGCGGGTGCTCA
* * *
35430547 ACCGATTGGAAAGGTAGAATGCGCAAGCCGGGGATCAACCCGGTCCCTCCCTACACACTATCAAT
64 ACAG-TCGGAGAGGTAGAATGCGCAAGCCGGGGATCAACCCGGTCCC-CCCTACACACTATCAAT
* * ** *
35430612 CCTGCTGCCATA-ACACCCTCGGTCTGGTCCGATCTTAGACTAGGAATGAAATCCGTATGCCTAA
127 CCTACTG-CA-ACA-ACCCTCGATCCAGTCCGATCTTAGACTAGGAATGAAATCCATATGCCTAA
* * *** *
35430676 GTCAACCCATGAAATGAGCGTACGGGTGCTGAGCCGGTTGAAGACGCATAACATGCAAGCCAGGG
189 GTCAACCCATGAAACGAGCGTACGGGCGCTGAGCCGACCGAAGACGCATAACACGCAAGCCAGGG
* * * * * * * *
35430741 ATTGGCTCTGTCCCCCTCTGCGTGCTGTCGGTCCTGCTGCGACAACCTTCA-GTCCGGTTGGG
254 ATCGGCCCGGTCCCCCTCTACGTGCTGTCGGTCCCGCTGCCACAACCCT-AGGTCCAG-TGGG
* *
35430803 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCC-ACCCATGAAACGAGCGTGCGGGTGCTCAA
* * * *
35430868 TCAGCCAGAGAGGTAGAATGCGCAAGCCGGGGATCTACCTGGTCCCCCCT
65 -CAGTCGGAGAGGTAGAATGCGCAAGCCGGGGATCAACCCGGTCCCCCCT
35430918 GCGTGCTGTC
Statistics
Matches: 359, Mismatches: 65, Indels: 19
0.81 0.15 0.04
Matches are distributed among these distances:
315 3 0.01
316 88 0.25
317 17 0.05
318 3 0.01
319 146 0.41
320 100 0.28
321 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.20
Consensus pattern (314 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCACCCATGAAACGAGCGTGCGGGTGCTCAAC
AGTCGGAGAGGTAGAATGCGCAAGCCGGGGATCAACCCGGTCCCCCCTACACACTATCAATCCTA
CTGCAACAACCCTCGATCCAGTCCGATCTTAGACTAGGAATGAAATCCATATGCCTAAGTCAACC
CATGAAACGAGCGTACGGGCGCTGAGCCGACCGAAGACGCATAACACGCAAGCCAGGGATCGGCC
CGGTCCCCCTCTACGTGCTGTCGGTCCCGCTGCCACAACCCTAGGTCCAGTGGG
Found at i:35431011 original size:25 final size:26
Alignment explanation
Indices: 35430962--35431014 Score: 72
Period size: 25 Copynumber: 2.1 Consensus size: 26
35430952 CTGATTCGAT
*
35430962 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
35430988 CTTAGATTGGG-ATGAGCTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35431013 CT
1 CT
35431015 GAAGTTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
25 14 0.58
26 10 0.42
ACGTcount: A:0.23, C:0.17, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35431730 original size:26 final size:26
Alignment explanation
Indices: 35431692--35431744 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35431682 GGCTCAAAAT
35431692 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
35431718 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
35431744 C
1 C
35431745 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35431960 original size:158 final size:157
Alignment explanation
Indices: 35431718--35432219 Score: 544
Period size: 158 Copynumber: 3.2 Consensus size: 157
35431708 ACTCCGTATG
* * * *
35431718 CTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAA
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGCGCTCAA
* * *
35431782 CCGGTTGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCC-AGTCCCCCCTGCGTGCTGTCGATC
65 CCAGCTGGAGAGGCAGAATGCGTAAG-CGAGGATCGGCCCGA-TCCCCCCTGCGTGCTGTCGATC
* * *
35431846 ATGCTGCCACAACCCTCAATCTGGTCTGAT
128 CTGCTGCCACAACCCTCGATCCGGTCTGAT
* * * * * *
35431876 CTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACAAGCGTGTGGGCGTTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGCGCTCAAC
* * * * * *
35431941 CAGCTGAAGAGGCATAATGCGTAAGCTAGGGATCGACCCGATCCCCCTCTGCGTGCTATCGGTCC
66 CAGCTGGAGAGGCAGAATGCGTAAGCGA-GGATCGGCCCGATCCCCC-CTGCGTGCTGTCGATCC
* **
35432006 TGCTGCCACAACCCTCGGTCCGG-CTGGGG
129 TGCTGCCACAACCCTCGATCCGGTCT-GAT
** * *
35432035 CTTAGACACGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAGGCGTGCGGGCGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGCGCTCAAC
* * * * * * *
35432100 CTGCTGGAGAGGCAGAATGCGTAAGTCGGGGACCGGTCCGATCCCCCCTGCATGCTGCCAATCCT
66 CAGCTGGAGAGGCAGAATGCGTAAG-CGAGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCCT
* * *
35432165 GCTACCGCAACCCTTGGA-CCGGTCTGAT
130 GCTGCCACAACCC-TCGATCCGGTCTGAT
*
35432193 CTTAGATTGGGAATGAACTCCGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
35432220 TTAGACTGGG
Statistics
Matches: 278, Mismatches: 58, Indels: 16
0.79 0.16 0.05
Matches are distributed among these distances:
157 3 0.01
158 142 0.51
159 132 0.47
160 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.19
Consensus pattern (157 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGCGCTCAAC
CAGCTGGAGAGGCAGAATGCGTAAGCGAGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCCTG
CTGCCACAACCCTCGATCCGGTCTGAT
Found at i:35432061 original size:159 final size:158
Alignment explanation
Indices: 35431717--35432124 Score: 480
Period size: 159 Copynumber: 2.6 Consensus size: 158
35431707 AACTCCGTAT
* * * * *
35431717 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAA
1 GCTTAGACACGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGCGCTCAA
* * * * * *
35431782 CCGGTTGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCAGTCCCCCCTGCGTGCTGTCGATCA
66 CCAGCTGGAGAGGCAGAATGCGTAAGCAGAGGATCGACCCAGTCCCCCCTGCGTGCTATCGATCA
*
35431847 TGCTGCCACAACCCTCAATCTGGTCTGA
131 TGCTGCCACAACCCTCAATCCGGTCTGA
* ** * * * * * *
35431875 TCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACAAGCGTGTGGGCGTTGAG
1 GCTTAGACACGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGCGCTCAA
* * *
35431940 CCAGCTGAAGAGGCATAATGCGTAAGCTAG-GGATCGACCC-GATCCCCCTCTGCGTGCTATCGG
66 CCAGCTGGAGAGGCAGAATGCGTAAGC-AGAGGATCGACCCAG-TCCCCC-CTGCGTGCTATCGA
* ** *
35432003 TCCTGCTGCCACAACCCTCGGTCCGG-CTGGG
128 TCATGCTGCCACAACCCTCAATCCGGTCT-GA
* *
35432034 GCTTAGACACGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAGGCGTGCGGGCGCTCAA
1 GCTTAGACACGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGCGCTCAA
*
35432099 CCTGCTGGAGAGGCAGAATGCGTAAG
66 CCAGCTGGAGAGGCAGAATGCGTAAG
35432125 TCGGGGACCG
Statistics
Matches: 205, Mismatches: 41, Indels: 7
0.81 0.16 0.03
Matches are distributed among these distances:
157 1 0.00
158 91 0.44
159 113 0.55
ACGTcount: A:0.25, C:0.29, G:0.28, T:0.18
Consensus pattern (158 bp):
GCTTAGACACGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGCGCTCAA
CCAGCTGGAGAGGCAGAATGCGTAAGCAGAGGATCGACCCAGTCCCCCCTGCGTGCTATCGATCA
TGCTGCCACAACCCTCAATCCGGTCTGA
Found at i:35432229 original size:26 final size:26
Alignment explanation
Indices: 35432193--35432245 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
35432183 CCGGTCTGAT
*
35432193 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
35432219 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35432245 C
1 C
35432246 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35433288 original size:159 final size:157
Alignment explanation
Indices: 35432934--35433345 Score: 382
Period size: 159 Copynumber: 2.6 Consensus size: 157
35432924 TCCATGTGCT
* * * * *
35432934 TAGACATGGAATGAACTCTCTATGCCTAAGCTAACCCACGAAACGAGCGTGCGGGTGCTTAACCG
1 TAGACATGGAATGAACTCTCTATG-CTAAGCCAACCCAAGAAACGAGCGTGCGGGCGCTGAACCA
* * * ** *
35432999 GTCGGAGAGGTAGAATGCACAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTTGATCCTAC
65 GTCGGAGAGGCAGAATGCACAAGCCGGGGACCGACCCGGTCCCCCCTGCGTGCTGCCGATCCCAC
** * * *
35433064 TGCCGTAACCCTCGGTTTGATCCAATCT
130 TGCCACAACCCTCGGTTGGATCCAAGCG
* * * * * *
35433092 TAGAC-TGGGAATGAACTCTGTATGCCCAAGTCAACCCATGAAATGAGCGTGCGGGCGCTGAGCC
1 TAGACAT-GGAATGAACTCTCTATG-CTAAGCCAACCCAAGAAACGAGCGTGCGGGCGCTGAACC
* *
35433156 AGTCGGAGAGGCATAATGCACAAGCCGGGGACCGACCCGGTCCCCCTCTGCGTGCTGCCGGTCCC
64 AGTCGGAGAGGCAGAATGCACAAGCCGGGGACCGACCCGGTCCCCC-CTGCGTGCTGCCGATCCC
* * ***
35433221 ACTGCCACAACCCTTGGTCTGGCT-GGGGCG
128 ACTGCCACAACCCTCGGT-TGGATCCAAGCG
* * * ** * *
35433251 TAGACATGGAATGAACTGC-CTATGCTGAAGCCAACCCAAGAAACGGGCATGCAGGCTTTCAGCC
1 TAGACATGGAATGAACT-CTCTATGCT-AAGCCAACCCAAGAAACGAGCGTGCGGGCGCTGAACC
* *
35433315 AG-CTGGAGAGGCAGAATGCGCAAGCCAGGGA
64 AGTC-GGAGAGGCAGAATGCACAAGCCGGGGA
35433346 TCATCTTGGT
Statistics
Matches: 205, Mismatches: 42, Indels: 13
0.79 0.16 0.05
Matches are distributed among these distances:
157 1 0.00
158 96 0.47
159 103 0.50
160 5 0.02
ACGTcount: A:0.24, C:0.29, G:0.30, T:0.18
Consensus pattern (157 bp):
TAGACATGGAATGAACTCTCTATGCTAAGCCAACCCAAGAAACGAGCGTGCGGGCGCTGAACCAG
TCGGAGAGGCAGAATGCACAAGCCGGGGACCGACCCGGTCCCCCCTGCGTGCTGCCGATCCCACT
GCCACAACCCTCGGTTGGATCCAAGCG
Found at i:35434166 original size:26 final size:26
Alignment explanation
Indices: 35434129--35434179 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
35434119 GCTCAAAATC
35434129 TTAGACTGGGAATGAACTCCGTATGG
1 TTAGACTGGGAATGAACTCCGTATGG
35434155 TTAGACAT-GGAATGAACTCCGTATG
1 TTAGAC-TGGGAATGAACTCCGTATG
35434180 CCTAAGGCAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGG
Found at i:35434371 original size:157 final size:158
Alignment explanation
Indices: 35434155--35434646 Score: 530
Period size: 157 Copynumber: 3.1 Consensus size: 158
35434145 CTCCGTATGG
* * * *
35434155 TTAGACATGGAATGAACTCCGTATGCCTAAGGCAACCCACGAAACGAGCGTGCGAGCGCTCAG-C
1 TTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCC
* * * * * *
35434219 AGGCCAGAGAGGTAGAATGCACAAGTCGGGGATCGACCCGGTGCCCCTACGTGCTGTCGATCCTG
66 AGGCCAGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGGTCCCCCTGCGTGCTGTCGATCCTA
35434284 CTGCCACAACCCTCGGTCCGGTCTGATC
131 CTGCCACAACCCTCGGTCCGGTCTGATC
* * *
35434312 TTAGAC-TGGGAATGAACTCCATATGCATAAGTCAACCCATGAAACGAGCGTGCGGGCGCTAAGC
1 TTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * * ** * ** *
35434376 CA-GCTAAAGAGGCATAATGCGCAAGTCGGAGATCGGCTTGATCCCCCTCTGCGTGCTACCGAAC
65 CAGGCCAGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGGT-CCCC-CTGCGTGCTGTCGATC
* * **
35434440 CCACTGCCACAACCCTCGGTCTGG-CTGGGGC
128 CTACTGCCACAACCCTCGGTCCGGTCT-GATC
* * * * *
35434471 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTACGGGCACTCAGTC
1 TTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCC
* * * *
35434536 -GGCCGGAGAGGCAGAATGTGCAAGCTAGGGG-TCGGCCCTGTCCCCCTGCGTGCTGTCGATCCT
66 AGGCCAGAGAGGCAGAATGCGCAAG-TCGGGGATCGGCCCGGTCCCCCTGCGTGCTGTCGATCCT
* * *
35434599 ACTGTCGCAACCCTCGATCCGGTCTGATC
130 ACTGCCACAACCCTCGGTCCGGTCTGATC
35434628 TTAGAC-TGTGAATGAACTC
1 TTAGACATG-GAATGAACTC
35434647 TACAAGCTTA
Statistics
Matches: 270, Mismatches: 55, Indels: 20
0.78 0.16 0.06
Matches are distributed among these distances:
156 3 0.01
157 135 0.50
158 13 0.05
159 114 0.42
160 5 0.02
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.19
Consensus pattern (158 bp):
TTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCC
AGGCCAGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGGTCCCCCTGCGTGCTGTCGATCCTA
CTGCCACAACCCTCGGTCCGGTCTGATC
Found at i:35435045 original size:26 final size:26
Alignment explanation
Indices: 35435007--35435059 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
35434997 CCGGTCTGAT
*
35435007 CTTAGACTGGGAACGAACTCTGTATG
1 CTTAGACTGGGAACGAACTCCGTATG
* *
35435033 CTTAGACAT-GGAATGATCTCCGTATG
1 CTTAGAC-TGGGAACGAACTCCGTATG
35435059 C
1 C
35435060 CTAGGCCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAACGAACTCCGTATG
Found at i:35436026 original size:158 final size:158
Alignment explanation
Indices: 35435736--35436094 Score: 413
Period size: 158 Copynumber: 2.3 Consensus size: 158
35435726 GGTTACACAT
* * * * *
35435736 GGAATGAACTCCGTATGCCTAACCCAACCCATGAAACGAGCGTGCGGGCACTCAGTCGACCAGAG
1 GGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAGCCGACCAGAG
* * * * * * * *
35435801 AGGTAAAATGCGCAAGTCGGGGATCAGCCCGATCCCCCCTGCGTGTTGTCGATCCTGTTGCCGCA
66 AGGCAAAATGCGCAAGCCGGGGATCAACCCGATCCCCCCTACGTGCTGTCGATCCCGCTGCCACA
* * **
35435866 ACCCTCTGTCC-GGTCT-GATCTTAGACTG
131 ACCCTCGGTCCAGCT-TGGA-CTTAGACAA
* * * * *
35435894 GGAATTAACTCTGTATGCCTAAGTCAACCCACGAAATGGGCGTGTGGGCACTGAGCC-AGCCAGA
1 GGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAGCCGA-CCAGA
* * *
35435958 GAGGCATAATGC-CAAGCCGGGGATCAACCCGATCCCCCTTTACGTGCTGTCGGTCCCGCTGCCA
65 GAGGCAAAATGCGCAAGCCGGGGATCAACCCGATCCCCC-CTACGTGCTGTCGATCCCGCTGCCA
35436022 CAACCCTCGGTCCAGCTTGGACTTAGACAA
129 CAACCCTCGGTCCAGCTTGGACTTAGACAA
35436052 GGAATGAACT-TCGTATGCCTAAGCCAACCCACGAAATGAGCGT
1 GGAATGAACTCT-GTATGCCTAAGCCAACCCACGAAATGAGCGT
35436095 ATGGATGCTC
Statistics
Matches: 168, Mismatches: 28, Indels: 10
0.82 0.14 0.05
Matches are distributed among these distances:
157 26 0.15
158 138 0.82
159 4 0.02
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.19
Consensus pattern (158 bp):
GGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAGCCGACCAGAG
AGGCAAAATGCGCAAGCCGGGGATCAACCCGATCCCCCCTACGTGCTGTCGATCCCGCTGCCACA
ACCCTCGGTCCAGCTTGGACTTAGACAA
Found at i:35436117 original size:158 final size:158
Alignment explanation
Indices: 35435736--35436176 Score: 363
Period size: 158 Copynumber: 2.8 Consensus size: 158
35435726 GGTTACACAT
* * * * ** * ** *
35435736 GGAATGAACTCCGTATGCCTAACCCAACCCATGAAACGAGCGTGCGGGCACTCAGTC-GACCAGA
1 GGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCGTATGGACACTCAACCAG-CAAGA
* * * * * * * *
35435800 GAGGTAAAATGCGCAAGTCGGGGATCAGCCCGATCCCCCCTGCGTGTTGTCGATCCTGTTGCCGC
65 GAGGCAAAATGCGCAAGCCGGGGATCAACCCGATCCCCCCTACGTGCTGTCGATCCCGCTGCCAC
* * **
35435865 AACCCTCTGTCCGGTCTGATCTTAGACTG
130 AACCCTCGGTCCGCTCTGATCTTAGACAA
* * * * * * * *
35435894 GGAATTAACTCTGTATGCCTAAGTCAACCCACGAAATGGGCGTGTGGGCACTGAGCCAGCCAGAG
1 GGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCGTATGGACACTCAACCAGCAAGAG
* * *
35435959 AGGCATAATGC-CAAGCCGGGGATCAACCCGATCCCCCTTTACGTGCTGTCGGTCCCGCTGCCAC
66 AGGCAAAATGCGCAAGCCGGGGATCAACCCGATCCCCC-CTACGTGCTGTCGATCCCGCTGCCAC
35436023 AACCCTCGGTCCAGCT-TGGA-CTTAGACAA
130 AACCCTCGGTCC-GCTCT-GATCTTAGACAA
** * *
35436052 GGAATGAACT-TCGTATGCCTAAGCCAACCCACGAAATGAGCGTATGGATGCTCAACCGGTAAGA
1 GGAATGAACTCT-GTATGCCTAAGCCAACCCACGAAATGAGCGTATGGACACTCAACCAGCAAGA
* * * * ** * * * *
35436116 GAGGTAGAATACGCAAGCCGAGGATCGGCCC-AGTCCCCCCTGCATGTTGTCGATCCTGCTG
65 GAGGCAAAATGCGCAAGCCGGGGATCAACCCGA-TCCCCCCTACGTGCTGTCGATCCCGCTG
35436177 TTGGTCCTGC
Statistics
Matches: 227, Mismatches: 49, Indels: 14
0.78 0.17 0.05
Matches are distributed among these distances:
157 25 0.11
158 176 0.78
159 26 0.11
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (158 bp):
GGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCGTATGGACACTCAACCAGCAAGAG
AGGCAAAATGCGCAAGCCGGGGATCAACCCGATCCCCCCTACGTGCTGTCGATCCCGCTGCCACA
ACCCTCGGTCCGCTCTGATCTTAGACAA
Found at i:35436251 original size:26 final size:26
Alignment explanation
Indices: 35436213--35436265 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
35436203 TCGGTCTGAT
35436213 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35436239 CTTAGAC-GTGGAATGAACTCCGTATG
1 CTTAGACTG-GGAATGAACTCCGTATG
35436265 C
1 C
35436266 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35436506 original size:512 final size:507
Alignment explanation
Indices: 35435543--35436815 Score: 1432
Period size: 512 Copynumber: 2.5 Consensus size: 507
35435533 TAGACTGGGG
* * * * * **
35435543 ATGAACTCCTTATGCCTAAGTCAACCCACAAAACGAACGCGCGGGA-GCTCAACCGGTTGGAGAG
1 ATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTAC-GGATGCTCAACCGGTTGGAGAG
* *
35435607 GTAGAATGCGCAAGCCGGGGATCGGCCTGGTCCACCCCTATGTACAGTCGATCCTGCTGCTGGTC
65 GTAGAATGCGCAAGCCGGGGATCGGCC-CGTCC-CCCCTATGT---GTCGATCCTGCTGTTGGTC
** ** * * * * * *
35435672 CCAC-CACTGCAAACCTCGGTTCGGTCCGATCTTAG-GTTGGAATGAACTCCGTATGGTTACACA
125 CTGCTGTC-GCAACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC-
* ** *
35435735 TGGAATGAACTCCGTATGCCTAACCCAACCCATGAAACGAGCGTGCGGGCA-CTCAGTCGACCAG
188 TGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGG-AGCTCAGCCGACCAG
* *** * *
35435799 AGAGGTAAAATGCGCAAGTCGGGGATCAGCCCGATCCCCCCTGCGTGTTGTCGATCCTGTTGCCG
252 AGAGGTAAAATGCGCAAGTCGGGGATCAGCCCGATCCCCCCTACGCCCTGTCGATCCTGCTGACG
* * *
35435864 CAACCCTCTGTCCGGTCTGATCTTAGACTGGGAATTAACTCTGTATGCCTAAGTCAACCCACGAA
317 CAACCCTCTGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAA
* * * * * *
35435929 ATGGGCGTGTGGGCACTGAGCCAGCCAGAGAGGCATAATGCCAAGCCGGGGATCAACCCGATCCC
382 ACGAGCATGCGGGCACTGAACCAGCCAGAGAGGCATAATGCCAAGCCGAGGATCAACCCGAT-CC
** * *
35435994 CCTT-TACGTGCTGTCGGTCCCGCTGCCACAACCCTCGGTCCAGCTTGGACTTAGACAAGGA
446 CCTTCTACGTGCTACCGATCCCGCTGCCACAACCCTCGGTCCAGCTGGGACTTAGACAAGGA
* * * **
35436055 ATGAACTTCGTATGCCTAAGCCAACCCACGAAATGAGCGTATGGATGCTCAACCGGTAAGAGAGG
1 ATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTACGGATGCTCAACCGGTTGGAGAGG
* *
35436120 TAGAATACGCAAGCCGAGGATCGGCCCAGTCCCCCCTGCATGTTGTCGATCCTGCTGTTGGTCCT
66 TAGAATGCGCAAGCCGGGGATCGGCCC-GTCCCCCCT--ATG-TGTCGATCCTGCTGTTGGTCCT
*
35436185 GCTGTCGTAACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACGTGG
127 GCTGTCGCAACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC-TGG
* *
35436250 AATGAACTCCGTATGCCTAAGCCAACTCACAAAACGAGCGTGCGGGAGCTCAGCCGACCGGAGAG
191 AATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGAGCTCAGCCGACCAGAGAG
* * * *
35436315 GTAGAATG-GTAAGTCGGGGATC-GACCCGGTCCCCCCTACGCCCTGTCGATCTTGCTGACGCAA
256 GTAAAATGCGCAAGTCGGGGATCAG-CCCGATCCCCCCTACGCCCTGTCGATCCTGCTGACGCAA
35436378 CCCT-TGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAAC
320 CCCTCT-GTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAAC
* * * *
35436442 GAGCATGCGGGCGCTGAACC-GACCTA-AGAGGCATGATGCACAAGCCGAGGATCGACCTGATCC
384 GAGCATGCGGGCACTGAACCAG-CC-AGAGAGGCATAATGC-CAAGCCGAGGATCAACCCGATCC
* * *
35436505 CCTTCTACGTGCTACCGATCCCGCTGCCACAACCCTTGGTCCAGCTGGGGCTTAGACATGGA
446 CCTTCTACGTGCTACCGATCCCGCTGCCACAACCCTCGGTCCAGCTGGGACTTAGACAAGGA
* * * * * *
35436567 ATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGTGCTCAGCCGGTTGGAAAGG
1 ATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTACGGATGCTCAACCGGTTGGAGAGG
** * * *
35436632 TAGAATGCGCAAGTTGGGGATCAGCCCGATCCCACCTA-----CG----TGCTGTTGATCCTGCT
66 TAGAATGCGCAAGCCGGGGATCGGCCCG-TCCCCCCTATGTGTCGATCCTGCTGTTGGTCCTGCT
* * * * *
35436688 GTCACAACCCTCAGTTCGATCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTAGGGAT
130 GTCGCAACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT-GGAAT
* ** * * * * *
35436753 GAAGTCCAAATGGCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGAGG
194 GAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGAGCTCAGCCGACCAGAGAGG
35436816 CAGGATGCGC
Statistics
Matches: 648, Mismatches: 97, Indels: 44
0.82 0.12 0.06
Matches are distributed among these distances:
499 1 0.00
500 125 0.19
504 2 0.00
510 4 0.01
511 191 0.29
512 321 0.50
513 3 0.00
514 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (507 bp):
ATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTACGGATGCTCAACCGGTTGGAGAGG
TAGAATGCGCAAGCCGGGGATCGGCCCGTCCCCCCTATGTGTCGATCCTGCTGTTGGTCCTGCTG
TCGCAACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGAATGA
ACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGAGCTCAGCCGACCAGAGAGGTAAA
ATGCGCAAGTCGGGGATCAGCCCGATCCCCCCTACGCCCTGTCGATCCTGCTGACGCAACCCTCT
GTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCATG
CGGGCACTGAACCAGCCAGAGAGGCATAATGCCAAGCCGAGGATCAACCCGATCCCCTTCTACGT
GCTACCGATCCCGCTGCCACAACCCTCGGTCCAGCTGGGACTTAGACAAGGA
Found at i:35436653 original size:159 final size:157
Alignment explanation
Indices: 35436238--35436739 Score: 406
Period size: 159 Copynumber: 3.2 Consensus size: 157
35436228 AACTCCGTAT
* *
35436238 GCTTAGACGTGGAATGAACTCCGTATGCCTAAGCCAACTCACAAAACGAGCGTGCGGGAGCTCAG
1 GCTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGAGCTCAG
* * * * ** *
35436303 CCGACCGGAGAGGTAGAATG-GTAAGTCGGGGATCGACCCGGTCCCCCCTACGCCCTGTCGATCT
65 CCGACTGGAAAGGTAGAATGCGCAAGTCGGGGATCGACCCGATCCCCCCTACGCCCTACCGATCC
* * *
35436367 TGCTGACGCAACCCTTGGTCCGGTCTGA
130 CGCTGACACAACCCTTGGTCCAGTCTGA
* * * * * * *
35436395 TCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCATGCGGGCGCTGAA
1 GCTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGAGCTCAG
* * * * * * **
35436460 CCGACCT--AAGAGGCATG-ATGCACAAGCCGAGGATCGACCTGATCCCCTTCTACGTGCTACCG
65 CCGA-CTGGAA-AGGTA-GAATGCGCAAGTCGGGGATCGACCCGATCCCC-CCTACGCCCTACCG
* *
35436522 ATCCCGCTGCCACAACCCTTGGTCCAG-CTGGG
126 ATCCCGCTGACACAACCCTTGGTCCAGTCT-GA
* * * * *
35436554 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGTGCTCAG
1 GCTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGAGCTCAG
** * * ** ***
35436619 CCGGTTGGAAAGGTAGAATGCGCAAGTTGGGGATC-AGCCCGATCCCACCTACGTGCTGTTGATC
65 CCGACTGGAAAGGTAGAATGCGCAAGTCGGGGATCGA-CCCGATCCCCCCTACGCCCTACCGATC
* * ** *
35436683 CTGCTGTCACAACCCTCAGTTC-GATCTGA
129 CCGCTGACACAACCCTTGGTCCAG-TCTGA
* *
35436712 TCTTAGACTGGGAATGAACTCTGTATGC
1 GCTTAGACT-GGAATGAACTCCGTATGC
35436740 TTAGACTAGG
Statistics
Matches: 268, Mismatches: 62, Indels: 29
0.75 0.17 0.08
Matches are distributed among these distances:
156 2 0.01
157 67 0.25
158 81 0.30
159 115 0.43
160 3 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (157 bp):
GCTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGAGCTCAGC
CGACTGGAAAGGTAGAATGCGCAAGTCGGGGATCGACCCGATCCCCCCTACGCCCTACCGATCCC
GCTGACACAACCCTTGGTCCAGTCTGA
Found at i:35437817 original size:26 final size:26
Alignment explanation
Indices: 35437776--35437826 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
35437766 TTGATTCAAT
35437776 CTTAGACTGGCAATGAACTCCGTATA
1 CTTAGACTGGCAATGAACTCCGTATA
**
35437802 CTTAGACTGGGGATGAACTCCGTAT
1 CTTAGACTGGCAATGAACTCCGTAT
35437827 GCCTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.22, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCGTATA
Found at i:35438398 original size:158 final size:157
Alignment explanation
Indices: 35437973--35438399 Score: 402
Period size: 157 Copynumber: 2.7 Consensus size: 157
35437963 CTGATCTGAT
* * * *
35437973 CTTAGGCTCGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTACAT-AG
1 CTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGC-TCAG
** * * *
35438037 CTAGCCGGAGAGGTAGAATGCGCAAGCCTGGGATCGGCTCGGTCCCCTCTGCGTATGATCGATCC
65 CCGGCCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCTCGGTCCCC-CTGCGTATGATCGATCC
* * *
35438102 TGCTACCATAAACCTCAGTCCAGTTCGAT
129 CGCTACCACAAACCTCAGTCCAGTTCGAG
* * * *
35438131 CTTAGACTGGGAATGAAC-CCATATGCATAAGTCAACCCACAAAACGAGCGTGCGGGTGC-CGAA
1 CTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTC-AG
** * * * * * * * *
35438194 CCGATCGAAAAGTCATAATACGCAAGCCGGGGATCGACCCGGTCCCCCTATCGTACTGA-C-AGT
65 CCGGCCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCTCGGTCCCCCT-GCGTA-TGATCGA-T
* * *
35438257 CCCGCTGCCACAACCCTCGGTCCAGCTAT-G-G
127 CCCGCTACCACAAACCTCAGTCCAG-T-TCGAG
* * * *
35438288 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTACGGGTGCTCAG
1 CTTAGAC-TGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
* *
35438352 CCGGCCGGAGAGGCAAAATGCGTAAGCCGGGGATCGGCTCGATCCCCC
65 CCGGCCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCTCGGTCCCCC
35438400 CTACGTGCTG
Statistics
Matches: 212, Mismatches: 47, Indels: 20
0.76 0.17 0.07
Matches are distributed among these distances:
156 3 0.01
157 113 0.53
158 94 0.44
159 2 0.01
ACGTcount: A:0.26, C:0.30, G:0.26, T:0.18
Consensus pattern (157 bp):
CTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
CGGCCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCTCGGTCCCCCTGCGTATGATCGATCCCG
CTACCACAAACCTCAGTCCAGTTCGAG
Found at i:35438472 original size:158 final size:156
Alignment explanation
Indices: 35437971--35438472 Score: 426
Period size: 158 Copynumber: 3.2 Consensus size: 156
35437961 GTCTGATCTG
* * *
35437971 ATCTTAGGCTCGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTACAT-
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGC-TC
** * * * * * * *
35438035 AGCTAGCCGGAGAGGTAGAATGCGCAAGCCTGGGATCGGCTCGGTCCCCTCTGCGTATGATCGAT
65 AGCCGGCCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCTCGGTCCCCCCTACGTCTG-TAGAT
* * *
35438100 CCTGCTACCATAAACCTC-AGTCCAGTTCG
129 CCTGCTGCCATAACCCTCGA-TCCAG-TCA
* * * *
35438129 ATCTTAGACTGGGAATGAAC-CCATATGCATAAGTCAACCCACAAAACGAGCGTGCGGGTGC-CG
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTC-
* ** * * * * * * * *
35438192 AACCGATCGAAAAGTCATAATACGCAAGCCGGGGATCGACCCGGT-CCCCCTATCGTACTG-ACA
65 AGCCGGCCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCTCGGTCCCCCCTA-CGT-CTGTAGA
* * * *
35438255 GTCCCGCTGCCACAACCCTCGGTCCAG-CT
128 -TCCTGCTGCCATAACCCTCGATCCAGTCA
* * * *
35438284 ATGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTACGGGTGC
1 AT--CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGC
* * *
35438348 TCAGCCGGCCGGAGAGGCAAAATGCGTAAGCCGGGGATCGGCTCGATCCCCCCTACGTGCTGTTG
63 TCAGCCGGCCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCTCGGTCCCCCCTACGT-CTGTAG
* *
35438413 ATCCTGTTGCCGTAACCCTCGATCCAGTCCA
127 ATCCTGCTGCCATAACCCTCGATCCAGT-CA
* *
35438444 ATCTTAGACTGGGAATTAACTCTGTATGC
1 ATCTTAGACTGGGAATGAACTCCGTATGC
35438473 TTAGACTGGG
Statistics
Matches: 265, Mismatches: 63, Indels: 32
0.74 0.17 0.09
Matches are distributed among these distances:
155 3 0.01
156 6 0.02
157 107 0.40
158 137 0.52
159 9 0.03
160 3 0.01
ACGTcount: A:0.25, C:0.30, G:0.25, T:0.20
Consensus pattern (156 bp):
ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCA
GCCGGCCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCTCGGTCCCCCCTACGTCTGTAGATCC
TGCTGCCATAACCCTCGATCCAGTCA
Found at i:35440153 original size:26 final size:26
Alignment explanation
Indices: 35440113--35440165 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
35440103 GGCTCAAAAT
35440113 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
35440139 CTTAGACATGG-AATGAACTCCGTATG
1 CTTAGAC-TGGAAATGAACTCCGTATG
35440165 C
1 C
35440166 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:35440535 original size:159 final size:159
Alignment explanation
Indices: 35440138--35440554 Score: 432
Period size: 159 Copynumber: 2.6 Consensus size: 159
35440128 AACTCCGTAT
* * *
35440138 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGGAATGAGCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * *
35440203 CCGGCTGGAGAGGTAGAATGAGCAAGTTGAGGATCTGCCTAGTCACCCCCTGCGTGCTGTAAATC
66 CCGACTGGAGAGGCAGAATGCGCAAGTTGAGGATCAGCCTAGTCACCCCCTGCGTGCTGTAAATC
* ** *
35440268 CTGCTACCTTAACCCTCGATCCGGTCTGA
131 CCGCTACCACAACCCTCGATCCGGACTGA
* * * * *
35440297 TCTTAGAC-TAGGAATGAACTCCGTATGCATAAGTCAACCCA-TAAATCGAGCGTGCGGGCGCTG
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA-CGAGCGTGCGGGCGCTC
* * * * *
35440360 AGTCGACTGAAAAGGCATAATGCGCAAGTTGGGGATCAGCAC-AGTC-CCCCTCTGCGTGCTGCT
64 AGCCGACTGGAGAGGCAGAATGCGCAAGTTGAGGATCAGC-CTAGTCACCCC-CTGCGTGCTG-T
** * * *
35440423 -GGTCCCGCTACCACACCCCTCGGTCC-GACTGGG
126 AAATCCCGCTACCACAACCCTCGATCCGGACT-GA
* * * **
35440456 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGGCATACAAGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * *
35440521 CCGACCGGAGAGGCAGAACGCGCAAGCTGAGGAT
66 CCGACTGGAGAGGCAGAATGCGCAAGTTGAGGAT
35440555 TGGCTCGATT
Statistics
Matches: 206, Mismatches: 44, Indels: 16
0.77 0.17 0.06
Matches are distributed among these distances:
158 10 0.05
159 190 0.92
160 6 0.03
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.18
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGACTGGAGAGGCAGAATGCGCAAGTTGAGGATCAGCCTAGTCACCCCCTGCGTGCTGTAAATC
CCGCTACCACAACCCTCGATCCGGACTGA
Found at i:35440666 original size:26 final size:26
Alignment explanation
Indices: 35440615--35440667 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
35440605 TTAGTCCGAT
*
35440615 CTTAGACTAGGAATGAACTCTATATG
1 CTTAGACTAGGAATGAACTCCATATG
* * *
35440641 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
35440667 C
1 C
35440668 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:35441020 original size:26 final size:26
Alignment explanation
Indices: 35440981--35441032 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
35440971 TCCTATCCAA
35440981 TCTTAGACTGGGAATGAACTCTGTAT
1 TCTTAGACTGGGAATGAACTCTGTAT
35441007 TCTTAGACAT-GGAATGAACTCTGTAT
1 TCTTAGAC-TGGGAATGAACTCTGTAT
35441033 GACTAAGCCA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.15, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTTAGACTGGGAATGAACTCTGTAT
Found at i:35442838 original size:170 final size:168
Alignment explanation
Indices: 35442389--35442843 Score: 495
Period size: 170 Copynumber: 2.7 Consensus size: 168
35442379 TCTCTGTATG
* * * * * *
35442389 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATACGGGAGCTCAAC
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGAGCTC-AG
** * * * *
35442454 CGATCGGAGAGG-TGTAATGCGCAAGCCGAGGACCAGCTCGGTCCCCCTCTACGTGTTGCCGATC
65 CGGCCGGAGAGGCAG-AATGCGCAAGCCGGGGATCGGCTCGGTCCCCCT-TACGTGTTGCCGATC
* * ***
35442518 CCATTGCTGGTCCTGCTACACAACCCTCAGTCCGACTGGGT
128 CCACTGCTGGTCCTACTACACAACCCTCAGTCCGACTCAAT
* *
35442559 CTTAGAC-ATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGTGCTCAG
1 CTTAGACTA-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGAGCTCAG
* * * * *
35442623 CTGGCTGGAGAGGCAAAATGCGTAAGTCAGGGATCGGCTCGGTCCCCCTTACGT-TCTGCCGATC
65 C-GGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGGTCCCCCTTACGTGT-TGCCGATC
* *
35442687 CTACTGCTGGTCCTACTACTGCAACCCTCAGTCCGA-TCCAAT
128 CCACTGCTGGTCCTACTAC-ACAACCCTCAGTCCGACT-CAAT
* * *
35442729 CTTAGACTAGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGAGCTCAG-
* * * *
35442794 CGGCCGGAGAGGCCGAATGTGCAAGCCGGGGATTGGCCCGGTCCCACCTT
65 CGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGGTCCC-CCTT
35442844 GCATGCTGTC
Statistics
Matches: 237, Mismatches: 39, Indels: 17
0.81 0.13 0.06
Matches are distributed among these distances:
168 1 0.00
169 32 0.14
170 198 0.84
171 6 0.03
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (168 bp):
CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGAGCTCAGC
GGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGGTCCCCCTTACGTGTTGCCGATCCCA
CTGCTGGTCCTACTACACAACCCTCAGTCCGACTCAAT
Found at i:35443013 original size:160 final size:156
Alignment explanation
Indices: 35442727--35443188 Score: 453
Period size: 160 Copynumber: 2.9 Consensus size: 156
35442717 GTCCGATCCA
* * * *
35442727 ATCTTAGACTAGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
1 ATCTTAGAC-AGGAATGAACCTCGTATGCCTAAGCCAACCCACGAAACAAGCATGCGGGCACTCA
* * * * * * *
35442792 GTCGGCCGGAGAGGCCGAATGTGCAAGCCGGGGATTGGCCCGGTCCCACCTTGCATGCTGTCGAT
65 GCCAGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGT-CC-CCTTGCGTGCTGTCGAT
* *
35442857 CCTCCTACCGCAATCCTCAGTCCGGTTCT-G
128 CCTCCTACCGCAACCCTCAGT-CGG-ACTGG
* * *
35442887 ATCTTAGACAGGGAATGAACCTCGTATGCCTAAGTCAACCCAGGAAACAAGCATGCGGGCACTGA
1 ATCTTAGACA-GGAATGAACCTCGTATGCCTAAGCCAACCCACGAAACAAGCATGCGGGCACTCA
* * * *
35442952 GCCAGCCGAAAAGGCATAATGCGCAAGCCGGGGATCGACCCGATCCCTCTTCGCGTGCTGTCGAT
65 GCCAGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCC-CTT-GCGTGCTGTCGAT
* * *
35443017 CC-CACTGCCACAACCCTCAGTCTGACTGG
128 CCTC-CTACCGCAACCCTCAGTCGGACTGG
*** * * * * * * *
35443046 GGATTAGACATGAAAT-AAACTCCCTATACATAAGCCAACCCACGAAACAGGCATGCAGGCACTC
1 ATCTTAGACA-GGAATGAACCT-CGTATGCCTAAGCCAACCCACGAAACAAGCATGCGGGCACTC
* * * *
35443110 AGCTAGCTGGAGAGGTAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTGCGTGCTGTCGATC
64 AGCCAGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCTTGCGTGCTGTCGATC
* *
35443175 CTGCTATCGCAACC
129 CTCCTACCGCAACC
35443189 ATCGGTTTGA
Statistics
Matches: 246, Mismatches: 49, Indels: 17
0.79 0.16 0.05
Matches are distributed among these distances:
157 23 0.09
158 9 0.04
159 96 0.39
160 118 0.48
ACGTcount: A:0.25, C:0.31, G:0.26, T:0.18
Consensus pattern (156 bp):
ATCTTAGACAGGAATGAACCTCGTATGCCTAAGCCAACCCACGAAACAAGCATGCGGGCACTCAG
CCAGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCTTGCGTGCTGTCGATCCT
CCTACCGCAACCCTCAGTCGGACTGG
Found at i:35443531 original size:843 final size:841
Alignment explanation
Indices: 35441886--35443531 Score: 1789
Period size: 843 Copynumber: 2.0 Consensus size: 841
35441876 ACTCCGTATG
* *
35441886 CTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGCGCGTGCAGGCGCTTAGT
1 CTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGT
* * *
35441951 TGGCCAGAGAGGCAGAATACGCAAGCCGGAGATCAGCCTGGTCACCCCCTACGTGCTGTAAATCC
66 CGGCCAGAGAGGCAGAATACGCAAGCCGGAGATCAGCCCGGTCACCCCCTACATGCTGTAAATCC
* * * *
35442016 TGCTGCCACAACCCTCAGTCTGGTCCGATCTGAGACTGGGAAAGAACTCTGTATGCATAAGTCAA
131 TCCTACCACAACCCTCAGTCCGGTCCGATCTGAGACAGGGAAAGAACTCTGTATGCATAAGTCAA
** * ** * * * *
35442081 CCCACAAAATGAGCGTGCGAGTGCTGAGCCGACCGAAGAGGCATAATGTGTAAGTCAGGGATCAG
196 CCCACAAAACAAGCATGCGAGCACTGAGCCGACCGAAAAGGCATAATGCGCAAGCCAGGGATCAG
* * * ** * * *
35442146 CTCGGTCCCCCTCTGCATGCTGTCGGTCCTGCTGCCACAGCCCTCGGTTCGACTGGGGCTTAGAC
261 CCCGATCCCCCTCTGCATGCTGTCGATCCCACTGCCACAACCCTCAGTTCGACTGGGGATTAGAC
* * * ** * * *
35442211 ATGGAATAAACTCCCTATGCCTAAGCCAACCCACGAAATGGGGAGTATGGGCACTCAGCCGACCG
326 ATGAAATAAACTCCCTATACATAAGCCAACCCACGAAACAGGCAGCA-GGGCACTCAGCAGACCG
* * * *
35442276 GAGAGGCAGAATGCGCAAGCCAAGGATTGGCCCAGTCCCCCCTGCGTGCTGTCGATCCTACTGTT
390 GAGAGGCAGAATGCGCAAGCCAAGGATCGACCCAGTCCCCCCTGCGTGCTGTCGATCCTACTATC
* * * * * * *
35442341 GCAACCTTTGGTTCGATCTGATCTTAGATTGGCAATGATCTCTGTATGCTTAGACTGGGGATGAA
455 GCAACCATCGGTTCGATCTAATCTTAGACTGGCAATGAACTCCGTATGCTTAGACTAGGGATGAA
* * * *
35442406 CTCCGTATGCCTAAGTCAACCCATGAAACGAGCATACGGGAGCTCAACCGATCGGAGAGGTGTAA
520 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCATACAGGAGCTCAACCGATCGAAGAGGAGTAA
* * * * *
35442471 TGCGCAAGCCGAGGACCAGCTCGGTCCCCCTCTACGTGTTGCCGATCCCATTGCTGGTCCTGCTA
585 TGCGCAAGCCGAGGACCAGCCCGGTCCCCCTCTACGTGCTGCCGATCCCACTACTGGTCCTACTA
* *
35442536 CACAACCCTCAGTCCGACTGGGTCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATG
650 CACAACCCTCAGTCCGACTGGATCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACG
* * ** * ** * * * *
35442601 AAACGAGTGTGCGGGTGCTCAGCTGGCTGGAGAGGCAAAATGCGTAAGTCAGGGATCGGCTCGGT
715 AAACGAGCGTACGGGCACTCAGCTGACCAGAGAGGCAAAATGCG-AAGCCAGGGACCAGCTCGAT
* * *
35442666 CCCCCTTACGTTCTGCCGATCCTACTGCTGGTCCTACTACTGCAACCCTCAGTCCGATCCAAT
779 CCCCCTTACATGCGGCCGATCCTACTGCTGGTCCTACTACTGCAACCCTCAGTCCGATCCAAT
* * *
35442729 CTTAGACTAGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
1 CTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGT
* * ** * ** * * **
35442794 CGGCCGGAGAGGCCGAATGTGCAAGCCGGGGATTGGCCCGGTC-CCACCTTGCATGCTGTCGATC
66 CGGCCAGAGAGGCAGAATACGCAAGCCGGAGATCAGCCCGGTCACC-CCCTACATGCTGTAAATC
* * * * * *
35442858 CTCCTACCGCAATCCTCAGTCCGGTTCTGATCTTAGACAGGGAATGAAC-CTCGTATGCCTAAGT
130 CTCCTACCACAACCCTCAGTCCGG-TCCGATCTGAGACAGGGAAAGAACTCT-GTATGCATAAGT
** * *
35442922 CAACCCAGGAAACAAGCATGCGGGCACTGAGCC-AGCCGAAAAGGCATAATGCGCAAGCCGGGGA
193 CAACCCACAAAACAAGCATGCGAGCACTGAGCCGA-CCGAAAAGGCATAATGCGCAAGCCAGGGA
* *
35442986 TC-GACCCGATCCCTCT-TCGCGTGCTGTCGATCCCACTGCCACAACCCTCAG-TCTGACTGGGG
257 TCAG-CCCGATCCCCCTCT-GCATGCTGTCGATCCCACTGCCACAACCCTCAGTTC-GACTGGGG
35443048 ATTAGACATGAAATAAACTCCCTATACATAAGCCAACCCACGAAACAGGCATGCA-GGCACTCAG
319 ATTAGACATGAAATAAACTCCCTATACATAAGCCAACCCACGAAACAGGCA-GCAGGGCACTCAG
* * ** *
35443112 CTAG-CTGGAGAGGTAGAATGCGCAAGCCGGGGATCGACCCGGT-CCCCCTGCGTGCTGTCGATC
383 C-AGACCGGAGAGGCAGAATGCGCAAGCCAAGGATCGACCCAGTCCCCCCTGCGTGCTGTCGATC
* *
35443175 CTGCTATCGCAACCATCGGTTTGAT-TCAATCTTAGACTGGCAATGAACTCCGTATGCTTAGACT
447 CTACTATCGCAACCATCGGTTCGATCT-AATCTTAGACTGGCAATGAACTCCGTATGCTTAGACT
* * * ** * * ** *
35443239 AGGGATGAACTCCTTATGCCTAAGTCGACCCACGAAATGAGTGTGCAGGTGCTCAGTCGGTCGAA
511 AGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATACAGGAGCTCAACCGATCGAA
* * * * * * **
35443304 GAGGCAG-AATGTGCAAGCTGGGGATC-GACCCGATTCCCCC-CTACGTGCTGTCGATCCTGCTA
576 GAGG-AGTAATGCGCAAGCCGAGGACCAG-CCCG-GTCCCCCTCTACGTGCTGCCGATCCCACTA
* * ** * *
35443366 TTGGTCCTACTGTCGTAACCCTCTGTCCGGTCT-GATCTTAGAC-TGGGAATGAACTCCGTATGC
638 CTGGTCCTACT-ACACAACCCTCAGTCC-GACTGGATCTTAGACAT-GGAATGAACTCCGTATGC
*
35443429 CTAAGCCAACCCACGAAATGAGCGTACGGGCACTCAG-TCGACCAGAGAGGCAGAATATGC-AAG
700 CTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAGCT-GACCAGAGAGGCA-AA-ATGCGAAG
* * *
35443492 CC-GAGGACCAGCTCGATCCCCTTTGCATGCGGTCGATCCT
762 CCAG-GGACCAGCTCGATCCCCCTTACATGCGGCCGATCCT
35443532 GCTACCGCAA
Statistics
Matches: 652, Mismatches: 131, Indels: 40
0.79 0.16 0.05
Matches are distributed among these distances:
841 2 0.00
842 175 0.27
843 293 0.45
844 176 0.27
845 6 0.01
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.20
Consensus pattern (841 bp):
CTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGT
CGGCCAGAGAGGCAGAATACGCAAGCCGGAGATCAGCCCGGTCACCCCCTACATGCTGTAAATCC
TCCTACCACAACCCTCAGTCCGGTCCGATCTGAGACAGGGAAAGAACTCTGTATGCATAAGTCAA
CCCACAAAACAAGCATGCGAGCACTGAGCCGACCGAAAAGGCATAATGCGCAAGCCAGGGATCAG
CCCGATCCCCCTCTGCATGCTGTCGATCCCACTGCCACAACCCTCAGTTCGACTGGGGATTAGAC
ATGAAATAAACTCCCTATACATAAGCCAACCCACGAAACAGGCAGCAGGGCACTCAGCAGACCGG
AGAGGCAGAATGCGCAAGCCAAGGATCGACCCAGTCCCCCCTGCGTGCTGTCGATCCTACTATCG
CAACCATCGGTTCGATCTAATCTTAGACTGGCAATGAACTCCGTATGCTTAGACTAGGGATGAAC
TCCGTATGCCTAAGTCAACCCACGAAACGAGCATACAGGAGCTCAACCGATCGAAGAGGAGTAAT
GCGCAAGCCGAGGACCAGCCCGGTCCCCCTCTACGTGCTGCCGATCCCACTACTGGTCCTACTAC
ACAACCCTCAGTCCGACTGGATCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGA
AACGAGCGTACGGGCACTCAGCTGACCAGAGAGGCAAAATGCGAAGCCAGGGACCAGCTCGATCC
CCCTTACATGCGGCCGATCCTACTGCTGGTCCTACTACTGCAACCCTCAGTCCGATCCAAT
Found at i:35445634 original size:26 final size:26
Alignment explanation
Indices: 35445597--35445647 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
35445587 GCTCAAAATC
35445597 TTAGAATGGGAATGAACTCCGTATGG
1 TTAGAATGGGAATGAACTCCGTATGG
35445623 TTAGACAT-GGAATGAACTCCGTATG
1 TTAGA-ATGGGAATGAACTCCGTATG
35445648 CCTAAGCCAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.31, C:0.14, G:0.27, T:0.27
Consensus pattern (26 bp):
TTAGAATGGGAATGAACTCCGTATGG
Found at i:35446016 original size:159 final size:159
Alignment explanation
Indices: 35445623--35446038 Score: 430
Period size: 159 Copynumber: 2.6 Consensus size: 159
35445613 CTCCGTATGG
* * * *
35445623 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGGAATGAGCGTACAGGCGCTCAGCA
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAGCA
* * * * * * *
35445688 GACCGAAGAGACAGAATGTGTAAGCCGGGGATTAGCCCGGTCACCCCCTGTGTGCTGTCAATCCT
66 GACCGAAGAGGCAGAATGCGCAAGCCGGGGATCAGCACGGTCACCCCATGTGTGCTGTCAATCCC
* * * * *
35445753 GCTGTCGCAACCCTCGGTCCGGTCTAATC
131 ACTGCCACAACCCTCGGTCCGGACTAAGC
* * * * *
35445782 TTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCAC-AAATCGAACGTGCGGGCACTGAG
1 TTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA-CGAGCGTACGGGCACTCAG
* * * ** **
35445845 CTGATCGAAGAGGCATAATGCGCAAGTTGGGGATCAGCACGGTC-CCCCTATGTGTGCTG-CTGG
64 CAGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCAGCACGGTCACCCC-ATGTGTGCTGTC-AA
* * *
35445908 TCCCATTGCCACAACCCTTGGTCC-GACTGGAGC
127 TCCCACTGCCACAACCCTCGGTCCGGACT-AAGC
*
35445941 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAGTC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAG-C
* *
35446006 -GACCGGAGAGGCAGAATACGCAAGCCGGGGATC
65 AGACCGAAGAGGCAGAATGCGCAAGCCGGGGATC
35446039 GGTCCAGTCC
Statistics
Matches: 206, Mismatches: 43, Indels: 16
0.78 0.16 0.06
Matches are distributed among these distances:
158 11 0.05
159 190 0.92
160 5 0.02
ACGTcount: A:0.26, C:0.28, G:0.27, T:0.19
Consensus pattern (159 bp):
TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAGCA
GACCGAAGAGGCAGAATGCGCAAGCCGGGGATCAGCACGGTCACCCCATGTGTGCTGTCAATCCC
ACTGCCACAACCCTCGGTCCGGACTAAGC
Found at i:35446127 original size:26 final size:26
Alignment explanation
Indices: 35446097--35446175 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
35446087 TCTGTCCGAT
35446097 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
* *
35446123 CTTAGACTAGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
35446149 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
35446175 C
1 C
35446176 CTAAGTCAAC
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:35446543 original size:26 final size:26
Alignment explanation
Indices: 35446492--35446544 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
35446482 CCAGTCCAAT
* *
35446492 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
35446518 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
35446544 C
1 C
35446545 CTAAGCCAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:35446704 original size:26 final size:26
Alignment explanation
Indices: 35446675--35446727 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
35446665 CCAGTCCGAT
35446675 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
35446701 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35446727 C
1 C
35446728 CTAAGTCATC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35447747 original size:159 final size:158
Alignment explanation
Indices: 35447424--35447890 Score: 382
Period size: 159 Copynumber: 2.9 Consensus size: 158
35447414 AACTCCATAT
* * *** * * * * *
35447424 GCTTAGACAAGGAATGAACTTTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAAAGAACTCCCTATGCATAAGCCAACCCACAAAACGAGCATACGGGCGCTCAA
**** * * * * **
35447489 TTGGCCGGAGAGGTAGAATGCGCAAGCC-AGAGATCGGCCTGGTCACCCCCTGCGTGCTGTAAAT
66 CCAACCGAAGAGGCAGAATGCGCAAGCCGAG-GATCAGCCCGGTC-CCCCCTGCGTGCTGTCGAT
* ** * * * * *
35447553 CCTACTGCTGCAACCCTTGGTTCGGTCT-GC
129 CCTGCTGCCACAACACTCGGTCCAG-CTGGG
* * * * * *
35447583 TCTTAGAC-TGGGAAAGAACTCCGTATGCATAAGTCAACCCACAAAACGAGCATGCGGGTGCTGA
1 GCTTAGACAT-GGAAAGAACTCCCTATGCATAAGCCAACCCACAAAACGAGCATACGGGCGCTCA
* * * * * *
35447647 GCCGACCGAAGAGGCATAATGTGCAAGCCGGGGATCAGCCCGGTCCCCCTCTGCGTGCTGTCGGT
65 ACCAACCGAAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCGGTCCCCC-CTGCGTGCTGTCGAT
35447712 CCTGCTGCCACAACACTCGGTCCAGCTGGG
129 CCTGCTGCCACAACACTCGGTCCAGCTGGG
* * * * * * *
35447742 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCGACGAAATGGGCGTACGGGCGCTCAA
1 GCTTAGACATGGAAAGAACTCCCTATGCATAAGCCAACCCACAAAACGAGCATACGGGCGCTCAA
* * * *
35447807 CCAATCGGAGAGGCAGAATGCGTAAGCCGAGGATCAGCTCGGTCCCCCCTGCGTGCTGTCGATCC
66 CCAACCGAAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCGGTCCCCCCTGCGTGCTGTCGATCC
* * *
35447872 TGCTGTCGCAACCCTCGGT
131 TGCTGCCACAACACTCGGT
35447891 TCGGTCTGAT
Statistics
Matches: 245, Mismatches: 58, Indels: 11
0.78 0.18 0.04
Matches are distributed among these distances:
158 38 0.16
159 205 0.84
160 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.29, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAAAGAACTCCCTATGCATAAGCCAACCCACAAAACGAGCATACGGGCGCTCAA
CCAACCGAAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCGGTCCCCCCTGCGTGCTGTCGATCC
TGCTGCCACAACACTCGGTCCAGCTGGG
Found at i:35448306 original size:26 final size:26
Alignment explanation
Indices: 35448268--35448319 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
35448258 CCAATCTAAT
35448268 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35448294 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
35448320 TGTAAGCCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35449271 original size:355 final size:354
Alignment explanation
Indices: 35448586--35449288 Score: 851
Period size: 355 Copynumber: 2.0 Consensus size: 354
35448576 TCGGTCCCGT
* *
35448586 TGCCACAACCCTCGGTCCAGTTGGGGCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCC
1 TGCCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCC
*** * * * *
35448651 ACGAAACGGGCGTACGAGTGCTCAACCGGCCAGAGAGGCAAAATGTGCAAGCCGGGGATCGGCTC
66 ACGAAACAAACGTACGAGCGCTCAACCGACCAGAGAGGCAAAATGCGCAAGCCAGGGATCGGCTC
* * * * *
35448716 GGTCCCCCCTGCCTGCTGTCGATCTTGCTGTCGTAACCCACGATCCAGTCTGATCTTAGACTGGG
131 GGTCCCCCCTGCATGCTATCGATCTCGCTGCCGTAACCCACGATCCAGTCCGATCTTAGACTGGG
* * *
35448781 AATGAACTCTGCATGCTTAGACTAGGGATGAACTCCGTTTGCCTAAGTCAACCCACGAAACGAGC
196 AATGAACTCTGCATGCTTAGACTAGGAATGAACTCCGTGTGCCTAAGCCAACCCACGAAACGAGC
* * ** * * * *
35448846 GTGCGGGTGCTCAGTCGATCAGAGAGGCATAATACGAAAGTCGGGGATCAGCTCGATCCCCTTTT
261 ATGCGGGCGCTCAACCGACCAGAGAGGCAGAATACGAAAGTCGGGGATCAGCCCGATCCCC-TCT
*
35448911 GTGTGCTGTCGATCCCGCTACCGATCCTGC
325 GTGTGCTGTCAATCCCGCTACCGATCCTGC
*
35448941 TGCCACAACCCTCGGTCCGGCTGGGGC-TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCC
1 TGCCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCC
* * * * * * * * *
35449005 ATGAAACAAACGTGCGGGCGCTCAGCCGATCGGAGAGGCAGAATGCGCAAGTCAGGGATTGGCTC
66 ACGAAACAAACGTACGAGCGCTCAACCGACCAGAGAGGCAAAATGCGCAAGCCAGGGATCGGCTC
* * * *
35449070 GGTCCCCCATTGCATGCTATCGAT-TCGACTGCCGTAACCCTCGATCCGGTCCGATTTTAGACTG
131 GGTCCCCC-CTGCATGCTATCGATCTCG-CTGCCGTAACCCACGATCCAGTCCGATCTTAGACTG
* * *
35449134 GGAATGAACT-TCGTATGCTTAGAC-ATGGAATGAACTCTGTGTGCCTAAGCCAACCCACGAAAT
194 GGAATGAACTCT-GCATGCTTAGACTA-GGAATGAACTCCGTGTGCCTAAGCCAACCCACGAAAC
* * * **
35449197 GAGCATGCGGGCGCTCAACCGACCGGAGAGGTAGAATGC-ATAAGTCAGGGGATTGGCCCGATCC
257 GAGCATGCGGGCGCTCAACCGACCAGAGAGGCAGAATACGA-AAGTC-GGGGATCAGCCCGATCC
*
35449261 TCC-CTGTGTGCTGTCAATCCTGCTACCG
320 -CCTCTGTGTGCTGTCAATCCCGCTACCG
35449289 CAACCCTCGG
Statistics
Matches: 292, Mismatches: 49, Indels: 14
0.82 0.14 0.04
Matches are distributed among these distances:
354 98 0.34
355 178 0.61
356 14 0.05
357 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (354 bp):
TGCCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCC
ACGAAACAAACGTACGAGCGCTCAACCGACCAGAGAGGCAAAATGCGCAAGCCAGGGATCGGCTC
GGTCCCCCCTGCATGCTATCGATCTCGCTGCCGTAACCCACGATCCAGTCCGATCTTAGACTGGG
AATGAACTCTGCATGCTTAGACTAGGAATGAACTCCGTGTGCCTAAGCCAACCCACGAAACGAGC
ATGCGGGCGCTCAACCGACCAGAGAGGCAGAATACGAAAGTCGGGGATCAGCCCGATCCCCTCTG
TGTGCTGTCAATCCCGCTACCGATCCTGC
Found at i:35449296 original size:185 final size:184
Alignment explanation
Indices: 35448968--35449336 Score: 465
Period size: 185 Copynumber: 2.0 Consensus size: 184
35448958 CGGCTGGGGC
* * *
35448968 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAACGTGCGGGCGCTCAGCCG
1 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAACATGCGGGCGCTCAACCG
* * * * * *
35449033 ATCGGAGAGGCAGAATGCGCAAGTCAGGGATTGGCTCGGTCCCCCATTGCATGCTATCGATTCGA
66 ACCGGAGAGGCAGAATGCACAAGTCAGGGATTGGCCCGATCCCCCATTG-ATGCTATCAATCCGA
* * * *
35449098 CTGCCGTAACCCTCGATCCGGTCCGATTTTAGACTGGGAATGAACTTCGTATGCT
130 CTACCGCAACCCTCGATCCGGTCCGATCTTAGACTAGGAATGAACTTCGTATGCT
* * ** *
35449153 TAGACATGGAATGAACTCTGTGTGCCTAAGCCAACCCACGAAATGAGCATGCGGGCGCTCAACCG
1 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAACATGCGGGCGCTCAACCG
* * *
35449218 ACCGGAGAGGTAGAATGCATAAGTCAGGGGATTGGCCCGATCCTCCC-TGTG-TGCTGTCAATCC
66 ACCGGAGAGGCAGAATGCACAAGTCA-GGGATTGGCCCGATCC-CCCAT-TGATGCTATCAATCC
* *
35449281 TG-CTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTTCGTATGC
128 -GACTACCGCAACCCTCGATCCGGTCCGATCTTAGACTAGGAATGAACTTCGTATGC
35449337 CTAAGTCAAC
Statistics
Matches: 157, Mismatches: 23, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
185 136 0.87
186 16 0.10
187 5 0.03
ACGTcount: A:0.25, C:0.27, G:0.27, T:0.22
Consensus pattern (184 bp):
TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAACATGCGGGCGCTCAACCG
ACCGGAGAGGCAGAATGCACAAGTCAGGGATTGGCCCGATCCCCCATTGATGCTATCAATCCGAC
TACCGCAACCCTCGATCCGGTCCGATCTTAGACTAGGAATGAACTTCGTATGCT
Found at i:35449501 original size:857 final size:862
Alignment explanation
Indices: 35447396--35449731 Score: 2762
Period size: 869 Copynumber: 2.7 Consensus size: 862
35447386 CGTGGCTCAA
* * *
35447396 AATCTTAGACTGGGAATGAACTCCATATGCTTAGACAAGGAATGAACTTTGTATGCCTAAGCCAA
1 AATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAA
* * *
35447461 CCCACGAAACGAGCGTGCGGGCGCTCAGTTGGCCGGAGAGGTAGAATGCGCAAGCCA-GAGATCG
66 CCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCGGAGAGGTAGAATGCGTAAG-CAGGGGATCG
* * * * * * * * *
35447525 GCCTGGTCACCCCCTGCGTGCTGTAAATCCTACTGCTGCAACCCTTGGTTCGGTCTGCTCTTAGA
130 GCCCGAT--CCCCCTGTGTGCTGTCAATCCTACTACCGCAACCCTCGGTCCGGTCTGATCTTAGA
* * * * * **
35447590 CTGGGAAAGAACTCCGTATGCATAAGTCAACCCACAAAACGAGCATGCGGGTGCTGAGCC-GACC
193 CTGGGAATGAACTTCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGAGCACTGAGCCAG-CC
* *
35447654 GAAGAGGCATAATGTGCAAGCCGGGGATCAGCCCGGTCCCCCTCTGCGTGCTGTCGGTCCTGCTG
257 GAAGAGGCATAATGCGCAAGCCGGGGATCA-CCCGGTCCCCCTCTGCGTGCTGTCGGTCCCGCTG
*
35447719 CCACAACACTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCGAC
321 CCACAAC-CTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
* * * *
35447784 GAAATGGGCGTACGGGCGCTCAACCAATCGGAGAGGCAGAATGCGTAAGCCGAGGATCAGCTCGG
385 GAAATGGGCGTACGGGCGCTCAACCGACCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCTCGG
* * * *
35447849 TCCCCCCTGCGTGCTGTCGATCCTGCTGTCGCAACCCTCGGTTCGGTCTGATCTTAGACTAGGAA
450 TCCCCCCTGCGTGCTGTCGATCCTGCTGTCGCAACCCTCGATCCAGTCTGATCTTAGACTGGGAA
* * * *
35447914 TGATCTCTGTATGCTTAGACTGGGGATGAACACCGTATGCCTAAGTCAACCCACAGAATGAGTGT
515 TGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACA-AACGAGCGT
* ** * *
35447979 GCGGGCGCTCAACCGATGGGAGAGGCATAATGCGTAAGCCGAGGATCAGCCCGATCCCCCTCTAC
579 GCGGGCGCTCAGCCGATCAGAGAGGCATAATACGAAAGCCGAGGATCAGCCCGATCCCCCTCTAC
* * * *
35448044 GTGCTGTTGATCCCGCTATCGGTCCTGCTATCACAACCCTCGGTCCGACTAGGGCTTAGACATGG
644 GTGCTGTCGATCCCGCTACCGATCCTGCTACCACAACCCTCGGTCCGACTAGGGCTTAGACATGG
* * * *
35448109 AATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTACAGGCACTCAGCTGGCCGGAGAG
709 AATGAACTCCGTATGCCTAAGCCAACCCACAAAACAAACGTACAGGCACTCAGCCGACCGGAGAG
* * * ** * *
35448174 GCAAAATGCGTAAGCTGAGGATCGGGTCGATCCCCTTTTACGTTCGTTGATCCTGCTACTGGTCC
774 GCAAAATGCGCAAGCAGAGGATCGGCTCGATCCCCCATTACGATCGCTGATCCTGC-ACT-GTCC
* * * *
35448239 TACTACCAAAACCCTTGGTCCAATCT
837 GACTACCAAAACCCTCGATCCAATCC
* **
35448265 AATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGTGTAAGCCAA
1 AATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAA
* * ** * * *
35448330 CCCATGAAACGAGCGTGCGGGCACTCAGTCGGCCGGAGAGACAGAATGCGTAAGCCGAGGATCGA
66 CCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCGGAGAGGTAGAATGCGTAAGCAGGGGATCGG
* * * * * * *
35448395 CCCGATCCCCCAT-TACCTACTGTCGATCCTACTACCACAATCCTCGATCTGGTCTGATCTTAGA
131 CCCGATCCCCC-TGT--GTGCTGTCAATCCTACTACCGCAACCCTCGGTCCGGTCTGATCTTAGA
* ** * *
35448459 CTGGGAATGAACCTCGTATGCCTAAGTCAACCCATGAAACGAGCGTGC-AGGCACTGAACTAGCC
193 CTGGGAATGAACTTCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGA-GCACTGAGCCAGCC
* * * * *
35448523 GAAGAGGCATAATGCACAAGCCGGGGATCGGCCTGGTCCCCCTCTCCGTGCTGTCGGTCCCGTTG
257 GAAGAGGCATAATGCGCAAGCCGGGGATC-ACCCGGTCCCCCTCTGCGTGCTGTCGGTCCCGCTG
* *
35448588 CCACAACCCTCGGTCCAGTTGGGGCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCAC
321 CCACAA-CCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
* * * * * * * *
35448653 GAAACGGGCGTACGAGTGCTCAACCGGCCAGAGAGGCAAAATGTGCAAGCCGGGGATCGGCTCGG
385 GAAATGGGCGTACGGGCGCTCAACCGACCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCTCGG
* * * *
35448718 TCCCCCCTGCCTGCTGTCGATCTTGCTGTCGTAACCCACGATCCAGTCTGATCTTAGACTGGGAA
450 TCCCCCCTGCGTGCTGTCGATCCTGCTGTCGCAACCCTCGATCCAGTCTGATCTTAGACTGGGAA
* * *
35448783 TGAACTCTGCATGCTTAGACTAGGGATGAACTCCGTTTGCCTAAGTCAACCCACGAAACGAGCGT
515 TGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCAC-AAACGAGCGT
* * * * * * * **
35448848 GCGGGTGCTCAGTCGATCAGAGAGGCATAATACGAAAGTCGGGGATCAGCTCGATCCCCTTTTGT
579 GCGGGCGCTCAGCCGATCAGAGAGGCATAATACGAAAGCCGAGGATCAGCCCGATCCCCCTCTAC
* * *
35448913 GTGCTGTCGATCCCGCTACCGATCCTGCTGCCACAACCCTCGGTCCGGCTGGGGC-TAGACATGG
644 GTGCTGTCGATCCCGCTACCGATCCTGCTACCACAACCCTCGGTCCGACTAGGGCTTAGACATGG
** * * * *
35448977 AATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAACGTGCGGGCGCTCAGCCGATCGGAGAG
709 AATGAACTCCGTATGCCTAAGCCAACCCACAAAACAAACGTACAGGCACTCAGCCGACCGGAGAG
* * * *
35449042 GCAGAATGCGCAAGTCAG-GGATTGGCTCGGTCCCCCATTGC-AT-GCT-AT-C-G-A-T-T-CG
774 GCAAAATGCGCAAG-CAGAGGATCGGCTCGATCCCCCATTACGATCGCTGATCCTGCACTGTCCG
* ** **
35449097 ACTGCCGTAACCCTCGATCCGGTCC
838 ACTACCAAAACCCTCGATCCAATCC
* * * *
35449122 GATTTTAGACTGGGAATGAACTTCGTATGCTTAGACATGGAATGAACTCTGTGTGCCTAAGCCAA
1 AATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAA
* * ** * * *
35449187 CCCACGAAATGAGCATGCGGGCGCTCAACCGACCGGAGAGGTAGAATGCATAAGTCAGGGGATTG
66 CCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCGGAGAGGTAGAATGCGTAAG-CAGGGGATCG
*
35449252 GCCCGATCCTCCCTGTGTGCTGTCAATCCTGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGAC
130 GCCCGATCC-CCCTGTGTGCTGTCAATCCTACTACCGCAACCCTCGGTCCGGTCTGATCTTAGAC
* * *
35449317 TAGGAATGAACTTCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGAGCACTGAGCCAGCCAA
194 TGGGAATGAACTTCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGAGCACTGAGCCAGCCGA
* ** * * *
35449382 AAAGGCATAATGCGCAAGCTAGGGATCTACCCAGTTCCCCTCTGCGTGCTGTTGGTCCCGCTGCC
259 AGAGGCATAATGCGCAAGCCGGGGATC-ACCCGGTCCCCCTCTGCGTGCTGTCGGTCCCGCTGCC
* * *
35449447 ACAACCGTCAGTTC-GACTGGGGCATAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACG
323 ACAACC-TCGGTCCAG-CTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACG
** * * * * * *
35449511 AAATGGGCGTGTGGGCGCTCAGCCGACCGGAGAGGTAGAATGCGTAAGCTGGGGATTGGCCCGAT
386 AAATGGGCGTACGGGCGCTCAACCGACCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCTCGGT
* * * *
35449576 CCCCCCTGCGTGCTGTCGATCCTACTGTCGCAACCCTCTGTTCGA-TCTGATCTTAGACGGGGAA
451 CCCCCCTGCGTGCTGTCGATCCTGCTGTCGCAACCCTC-GATCCAGTCTGATCTTAGACTGGGAA
** * *
35449640 TGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATAAAACGAACGT
515 TGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCA-CAAACGAGCGT
* * *
35449705 GTGGGCGTTCAGCCGACCAGAGAGGCA
579 GCGGGCGCTCAGCCGATCAGAGAGGCA
35449732 GGATGCACAA
Statistics
Matches: 1227, Mismatches: 222, Indels: 48
0.82 0.15 0.03
Matches are distributed among these distances:
856 3 0.00
857 502 0.41
858 22 0.02
859 4 0.00
860 1 0.00
861 1 0.00
863 1 0.00
864 1 0.00
865 2 0.00
866 2 0.00
867 6 0.00
868 95 0.08
869 584 0.48
870 3 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.21
Consensus pattern (862 bp):
AATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAA
CCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCGGAGAGGTAGAATGCGTAAGCAGGGGATCGG
CCCGATCCCCCTGTGTGCTGTCAATCCTACTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTG
GGAATGAACTTCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGAGCACTGAGCCAGCCGAAG
AGGCATAATGCGCAAGCCGGGGATCACCCGGTCCCCCTCTGCGTGCTGTCGGTCCCGCTGCCACA
ACCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATG
GGCGTACGGGCGCTCAACCGACCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCTCGGTCCCCC
CTGCGTGCTGTCGATCCTGCTGTCGCAACCCTCGATCCAGTCTGATCTTAGACTGGGAATGAACT
CTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAACGAGCGTGCGGGCG
CTCAGCCGATCAGAGAGGCATAATACGAAAGCCGAGGATCAGCCCGATCCCCCTCTACGTGCTGT
CGATCCCGCTACCGATCCTGCTACCACAACCCTCGGTCCGACTAGGGCTTAGACATGGAATGAAC
TCCGTATGCCTAAGCCAACCCACAAAACAAACGTACAGGCACTCAGCCGACCGGAGAGGCAAAAT
GCGCAAGCAGAGGATCGGCTCGATCCCCCATTACGATCGCTGATCCTGCACTGTCCGACTACCAA
AACCCTCGATCCAATCC
Found at i:35449560 original size:159 final size:157
Alignment explanation
Indices: 35449153--35449597 Score: 423
Period size: 159 Copynumber: 2.8 Consensus size: 157
35449143 TTCGTATGCT
* * * *
35449153 TAGACATGGAATGAACTCTGTGTGCCTAAGCCAACCCACGAAATGAGCATGCGGGCGCTCAACCG
1 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCG
* * *
35449218 ACCGGAGAGGTAGAATGCATAAG-TCAGGGGATTGGCCCGATCCTCCCTGTGTGCTGTCAATCCT
66 ACCGGAGAGGTAGAATGCGTAAGCT-A-GGGATTGGCCCGATCC-CCCTGCGTGCTGTCAATCCC
* * * * *
35449282 GCTACCGCAACCCTCGGTCCGGTCTGATCT
128 GCTACCACAACCCTCAGTCCGGACTGAGCA
* * * * * *
35449312 TAGAC-TAGGAATGAACTTCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGAGCACTGAGCC
1 TAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCC
** * * * * * * ***
35449376 -AGCCAAAAAGGCATAATGCGCAAGCTAGGGATCT-ACCCAGTTCCCCTCTGCGTGCTGTTGGTC
65 GA-CCGGAGAGGTAGAATGCGTAAGCTAGGGAT-TGGCCC-GATCCCC-CTGCGTGCTGTCAATC
* * * *
35449439 CCGCTGCCACAACCGTCAGTTC-GACTGGGGCA
126 CCGCTACCACAACCCTCAGTCCGGACT-GAGCA
* * *
35449471 TAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGTGGGCGCTCAGCCG
1 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCG
* *
35449536 ACCGGAGAGGTAGAATGCGTAAGCTGGGGATTGGCCCGATCCCCCCTGCGTGCTGTCGATCC
66 ACCGGAGAGGTAGAATGCGTAAGCTAGGGATTGGCCCGAT-CCCCCTGCGTGCTGTCAATCC
35449598 TACTGTCGCA
Statistics
Matches: 222, Mismatches: 53, Indels: 23
0.74 0.18 0.08
Matches are distributed among these distances:
158 33 0.15
159 186 0.84
160 3 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (157 bp):
TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCG
ACCGGAGAGGTAGAATGCGTAAGCTAGGGATTGGCCCGATCCCCCTGCGTGCTGTCAATCCCGCT
ACCACAACCCTCAGTCCGGACTGAGCA
Found at i:35449668 original size:26 final size:26
Alignment explanation
Indices: 35449627--35449679 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35449617 TCGATCTGAT
35449627 CTTAGACGGGGAATGAACTCCATATG
1 CTTAGACGGGGAATGAACTCCATATG
*
35449653 CTTAGACTGGGG-ATGAACTCCGTATG
1 CTTAGAC-GGGGAATGAACTCCATATG
35449679 C
1 C
35449680 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (26 bp):
CTTAGACGGGGAATGAACTCCATATG
Found at i:35449869 original size:26 final size:26
Alignment explanation
Indices: 35449826--35449878 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
35449816 GACTGGGGAT
35449826 CTTAGACTAGGAAAGAACTCCATATG
1 CTTAGACTAGGAAAGAACTCCATATG
* * * *
35449852 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAAAGAACTCCATATG
35449878 C
1 C
35449879 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTAGGAAAGAACTCCATATG
Found at i:35450204 original size:26 final size:26
Alignment explanation
Indices: 35450168--35450220 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
35450158 CCGATCCGAT
35450168 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
35450194 CTTATACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
35450220 C
1 C
35450221 CTAGGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:35450929 original size:26 final size:26
Alignment explanation
Indices: 35450891--35450943 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
35450881 GGCTCAAAAT
*
35450891 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
35450917 CTTAGACAT-GGAATTAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
35450943 C
1 C
35450944 CTGAGTCGAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35451410 original size:26 final size:26
Alignment explanation
Indices: 35451374--35451452 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
35451364 TCGATCTGAT
* *
35451374 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
35451400 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
*
35451426 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
35451452 C
1 C
35451453 CTAAGTCAAC
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.25, C:0.16, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:35452287 original size:26 final size:26
Alignment explanation
Indices: 35452258--35452308 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
35452248 CGGTCTGATC
35452258 TTAGACTGGGAATGAACTCCGTATGG
1 TTAGACTGGGAATGAACTCCGTATGG
* *
35452284 TTAGACTGGGGATGAACTTCGTATG
1 TTAGACTGGGAATGAACTCCGTATG
35452309 CCTAAGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.14, G:0.31, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGG
Found at i:35453971 original size:26 final size:26
Alignment explanation
Indices: 35453942--35453994 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
35453932 CTTGTCTGAT
* *
35453942 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
* *
35453968 CTTAAATTGGGGATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
35453994 C
1 C
35453995 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:35454690 original size:159 final size:158
Alignment explanation
Indices: 35454334--35454697 Score: 355
Period size: 158 Copynumber: 2.3 Consensus size: 158
35454324 AACTCCATAT
* * * *
35454334 GCTTAGACATAGAATGAACTCTGTATGCCTAAGCCAACCCA-TGAAACGAGCGTGTGGGCGCTGA
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACT-AAACAAGCATGCGGGCGCTGA
* *
35454398 GCCAGTCGGAGAGGCAGAATGCATAAGTCGAGGACTGACCCAGTCCCCCCTACGTGCTGTCGATC
65 GCCAGCCGGAGAGGCAGAATGCATAAGTCAAGGACTGACCCAGTCCCCCCTACGTGCTGTCGATC
* ** * *
35454463 CTACTACTGCATCCCTCAGTCTGATCTGA
130 CCACTACCACAACCCTCAGTCAGATCTGA
* * * ** *
35454492 TCTTAGA-TTGGGAATGAACTTTGTATGCCTAAGTTAACCCACTAAACAAGCATGCGGGTGCTGA
1 GCTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCACTAAACAAGCATGCGGGCGCTGA
* * * *
35454556 GCTAGCCGGAGAGGCATAATGCGA-AAGTCAAGGA-TCGGCCC-GATCCCCCTCTGCGTGCTGTC
65 GCCAGCCGGAGAGGCAGAATGC-ATAAGTCAAGGACT-GACCCAG-TCCCCC-CTACGTGCTGTC
* * * **
35454618 GGTCCCGCTGCCACAACCCTTGGTCCAG-T-TGGA
126 GATCCCACTACCACAACCCTCAGT-CAGATCT-GA
* *
35454651 GCTTAGACATGGAATGAACTCTCTATGCCTAAGCCAACCCACGAAAC
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACTAAAC
35454698 GGGCGTACGG
Statistics
Matches: 164, Mismatches: 33, Indels: 17
0.77 0.15 0.08
Matches are distributed among these distances:
157 3 0.02
158 89 0.54
159 69 0.42
160 3 0.02
ACGTcount: A:0.26, C:0.28, G:0.25, T:0.21
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACTAAACAAGCATGCGGGCGCTGAG
CCAGCCGGAGAGGCAGAATGCATAAGTCAAGGACTGACCCAGTCCCCCCTACGTGCTGTCGATCC
CACTACCACAACCCTCAGTCAGATCTGA
Found at i:35454840 original size:26 final size:26
Alignment explanation
Indices: 35454811--35454862 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
35454801 CAGTTTGATC
*
35454811 TTAGACTGGGAATGAACTTTGTATGG
1 TTAGACTGGGAATGAACTCTGTATGG
*
35454837 TTAGACTGGGGATGAACTCTGTATGG
1 TTAGACTGGGAATGAACTCTGTATGG
35454863 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.10, G:0.33, T:0.33
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCTGTATGG
Found at i:35455677 original size:26 final size:26
Alignment explanation
Indices: 35455626--35455678 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
35455616 CCGGTCTGAT
* *
35455626 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
35455652 CTTAGACTAGGG-ATGAACTCCATATG
1 CTTAGACT-GGGAATGAACTCCATATG
35455678 C
1 C
35455679 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:35456033 original size:26 final size:26
Alignment explanation
Indices: 35456004--35456056 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
35455994 CCAGTCCGAT
35456004 CTTAAAC-TGGGAATGAACTCCATATG
1 CTTAAACAT-GGAATGAACTCCATATG
* *
35456030 CTTAGACATGGAATGAACTCCCTATG
1 CTTAAACATGGAATGAACTCCATATG
35456056 C
1 C
35456057 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.26
Consensus pattern (26 bp):
CTTAAACATGGAATGAACTCCATATG
Found at i:35456529 original size:26 final size:26
Alignment explanation
Indices: 35456493--35456545 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
35456483 CTGGTCTGAC
*
35456493 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
*
35456519 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
35456545 C
1 C
35456546 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:35458416 original size:26 final size:26
Alignment explanation
Indices: 35458380--35458432 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
35458370 TTGGTCCGAT
35458380 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* * *
35458406 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
35458432 C
1 C
35458433 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:35459312 original size:26 final size:26
Alignment explanation
Indices: 35459272--35459324 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35459262 CCGGTCCAAT
35459272 CTTAGACTGGAAATGAACCCCGTATG
1 CTTAGACTGGAAATGAACCCCGTATG
*
35459298 CTTAGACATGG-AATGAACTCCGTATG
1 CTTAGAC-TGGAAATGAACCCCGTATG
35459324 C
1 C
35459325 CTAACCTGAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACCCCGTATG
Found at i:35459817 original size:26 final size:26
Alignment explanation
Indices: 35459773--35459825 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
35459763 CCAGTCCGAT
* *
35459773 CTTAGACTGAGAATGAACTTTGTATG
1 CTTAGACTGAGAATAAACTCTGTATG
* *
35459799 CTTAGACTGGGGATAAACTCTGTATG
1 CTTAGACTGAGAATAAACTCTGTATG
35459825 C
1 C
35459826 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGAGAATAAACTCTGTATG
Found at i:35460530 original size:26 final size:26
Alignment explanation
Indices: 35460492--35460570 Score: 133
Period size: 26 Copynumber: 3.0 Consensus size: 26
35460482 GGCTCAAAAT
35460492 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
35460518 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
*
35460544 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
35460570 C
1 C
35460571 CTAAGCCAAC
Statistics
Matches: 51, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
26 50 0.98
27 1 0.02
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:35461045 original size:158 final size:158
Alignment explanation
Indices: 35460544--35461045 Score: 462
Period size: 158 Copynumber: 3.2 Consensus size: 158
35460534 ACTCCGTATG
* * *
35460544 CTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCATTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGTTCAAC
* * * * *
35460609 CTACCA-GAGAGGCAGAATGCT-TAAGCTGGGGATCGACTCGGTCCCACCTATGTCCTGTCGATC
66 CGACCAGGAGAGGCAGAATG-TGCAAGCTGGGGATCGGC-CGGTCCCACCTACGTGCTGTCGATC
* * * *
35460672 GTGCTGCCGCAACCCTCAGTCTGGTTC-ACT
129 CTGCTACCGCAACCCTCGGTCCGGTTCGA-T
* * *
35460702 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGTTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGTTCAA
* * * * * * *
35460766 CCGATC-GAAAAGGCATAATGAGCAAGCTGGGGATCGGCCTGGTCCCCCTCTACGTGCTGTCGGT
65 CCGACCAGGAGAGGCAGAATGTGCAAGCTGGGGATCGGCC-GGTCCCAC-CTACGTGCTGTCGAT
* * * * * **
35460830 CCCGTTACCACAACCCTCGG-CCTGGCTGGGG
128 CCTGCTACCGCAACCCTCGGTCC-GGTTCGAT
* * * * * * ** * *
35460861 CTTAGACATGGAATGAACACCCTATGCCTAAGCCAGCCCATGAAATGGGCGTGTGGGTGCTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGTTCAAC
** * *
35460926 CGA-CAGGAGAGGCAGAATGTGCAAGCTGGGGATCGGTCCAATCCCTCCTACGTGCTGCCGATCC
66 CGACCAGGAGAGGCAGAATGTGCAAGCTGGGGATCGG-CCGGTCCCACCTACGTGCTGTCGATCC
* *
35460990 TGCTACCGTAACCCTCGGTCCAGTTCGAT
130 TGCTACCGCAACCCTCGGTCCGGTTCGAT
35461019 CTTAGAC-TGGGAATGAACTCCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
35461046 TTAGACTGGG
Statistics
Matches: 270, Mismatches: 62, Indels: 24
0.76 0.17 0.07
Matches are distributed among these distances:
157 3 0.01
158 148 0.55
159 116 0.43
160 3 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.21
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGTTCAAC
CGACCAGGAGAGGCAGAATGTGCAAGCTGGGGATCGGCCGGTCCCACCTACGTGCTGTCGATCCT
GCTACCGCAACCCTCGGTCCGGTTCGAT
Found at i:35461055 original size:26 final size:26
Alignment explanation
Indices: 35461019--35461071 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
35461009 CCAGTTCGAT
35461019 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
35461045 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35461071 C
1 C
35461072 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35461828 original size:159 final size:159
Alignment explanation
Indices: 35461574--35461874 Score: 372
Period size: 159 Copynumber: 1.9 Consensus size: 159
35461564 AAGCCCCAGA
* * * * * *
35461574 CGGATCGAGGGTTGTGGTAACAGGATCAGCAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTT
1 CGGACCGAGGATTGCGGTAACAGGATCAACAGCACGAAGAGGGGGACCGGGCCGATCCCCAGCTT
*
35461639 GCGCATTATGCCTCTCCAACCGACATAGCACCCGCAGGCTCATTTCATGGGCTGACTTAGGCATA
66 GCGCATTATGCCTCTCCAACCGACATAGCACCCGCACGCTCATTTCATGGGCTGACTTAGGCATA
*
35461704 TGGAGTTCATTCCCAGTTTAAGATCGGAT
131 CGGAGTTCATTCCCAGTTTAAGATCGGAT
* * * *
35461733 CGGACCGAGGATTGCGGTAGCAGGATCAACAGTACGTAAG-GGGGGACTGGGTCGATCCCCAGCT
1 CGGACCGAGGATTGCGGTAACAGGATCAACAGCACG-AAGAGGGGGACCGGGCCGATCCCCAGCT
* ** * * * * * * *
35461797 TGCGCATTCTGCCTCTCCGGCCGGC-TGAGCACCTGCACGTTCTTTTCATGGGTTGGCTTAGGCC
65 TGCGCATTATGCCTCTCCAACCGACAT-AGCACCCGCACGCTCATTTCATGGGCTGACTTAGGCA
35461861 TACGGAGTTCATTC
129 TACGGAGTTCATTC
35461875 TATGTCTAAG
Statistics
Matches: 118, Mismatches: 22, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
158 1 0.01
159 115 0.97
160 2 0.02
ACGTcount: A:0.20, C:0.27, G:0.31, T:0.23
Consensus pattern (159 bp):
CGGACCGAGGATTGCGGTAACAGGATCAACAGCACGAAGAGGGGGACCGGGCCGATCCCCAGCTT
GCGCATTATGCCTCTCCAACCGACATAGCACCCGCACGCTCATTTCATGGGCTGACTTAGGCATA
CGGAGTTCATTCCCAGTTTAAGATCGGAT
Found at i:35461907 original size:26 final size:26
Alignment explanation
Indices: 35461861--35461910 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
35461851 GGCTTAGGCC
*
35461861 TACGGAGTTCATTCTATGTCTAAGGA
1 TACGGAGTTCATTCCATGTCTAAGGA
35461887 TACGGAGTTCATTCCCA-GTCTAAG
1 TACGGAGTTCATT-CCATGTCTAAG
35461911 ATCGGATCGG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.91
27 2 0.09
ACGTcount: A:0.26, C:0.20, G:0.22, T:0.32
Consensus pattern (26 bp):
TACGGAGTTCATTCCATGTCTAAGGA
Found at i:35462611 original size:159 final size:159
Alignment explanation
Indices: 35462409--35462772 Score: 367
Period size: 158 Copynumber: 2.3 Consensus size: 159
35462399 CGCACGCCTA
* * * * *
35462409 TTTCGTAGGTTGGCTTAGGCATAGGGAGTTCT-TTCCATATCTAAGCCCCAG-TCAAATCGAGGG
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTT-TATTCCATGTCTAAGCACCAGACCAAATCGAGGG
** * * *
35462472 TTGTGGCAGCAGGACCAACAACATGCAGAGAGGGACCGAG-CTAACCCTCGACTTGCGCATTATG
65 TTACGGCAGCAAGACCAACAACATGCAGAG-GGGACCGAGTCGAACCCT-GACTTACGCATTATG
* * * *
35462536 CTTCTCCGGCCAGCTGAGTGTCCGAACACTCG
128 CCTCTCCAGCCAGCTGAGCGCCCGAACACTCG
* * *** *
35462568 TTTCGTGGGTTGACTTAGGCATACGGAGTTTATTCCAGGTCTAAG-ATTGGACCGAATCGAGGGT
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTTATTCCATGTCTAAGCACCAGACCAAATCGAGGGT
* * * * * ** *
35462632 TACGGTAGCAAGATCGACAGCATGCAGAGGGGACCGGGTCGGTCCCTGACTTACGCATTCTGCCT
66 TACGGCAGCAAGACCAACAACATGCAGAGGGGACCGAGTCGAACCCTGACTTACGCATTATGCCT
* * * *
35462697 CTCCAGTCGGCTGAGCGCCCGCACGCTCG
131 CTCCAGCCAGCTGAGCGCCCGAACACTCG
* *
35462726 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTTATTCCATGTCTAAGCA
35462773 TATAGAGTTC
Statistics
Matches: 165, Mismatches: 36, Indels: 8
0.79 0.17 0.04
Matches are distributed among these distances:
158 88 0.53
159 77 0.47
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.25
Consensus pattern (159 bp):
TTTCGTGGGTTGGCTTAGGCATACGGAGTTTATTCCATGTCTAAGCACCAGACCAAATCGAGGGT
TACGGCAGCAAGACCAACAACATGCAGAGGGGACCGAGTCGAACCCTGACTTACGCATTATGCCT
CTCCAGCCAGCTGAGCGCCCGAACACTCG
Found at i:35462774 original size:26 final size:26
Alignment explanation
Indices: 35462744--35462796 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
35462734 GTTGGCTTAG
*
35462744 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
35462770 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
35462796 G
1 G
35462797 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:35462978 original size:26 final size:26
Alignment explanation
Indices: 35462942--35462992 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
35462932 TGACTCAGGG
35462942 ATACGGAGTTC-ATCCCCAGTCTAAGC
1 ATACGGAGTTCAAT-CCCAGTCTAAGC
35462968 ATACGGAGTTCAATCCCAGTCTAAG
1 ATACGGAGTTCAATCCCAGTCTAAG
35462993 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (26 bp):
ATACGGAGTTCAATCCCAGTCTAAGC
Found at i:35463317 original size:26 final size:26
Alignment explanation
Indices: 35463281--35463333 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35463271 GTTGGCTTAG
*
35463281 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
35463307 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
35463333 G
1 G
35463334 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:35464519 original size:26 final size:26
Alignment explanation
Indices: 35464470--35464521 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
35464460 GTTGGCTTAG
***
35464470 GCATACGGAGTTCATTCTGTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
35464496 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
35464522 AATTTTGAGC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.21, G:0.21, T:0.33
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:35465231 original size:26 final size:26
Alignment explanation
Indices: 35465194--35465243 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
35465184 GTTGACTTGG
35465194 GCATACGAAGTTCA-TCCCTAGTCTGA
1 GCATACGAAGTTCATTCCC-AGTCTGA
*
35465220 GCATACGGAGTTCATTCCCAGTCT
1 GCATACGAAGTTCATTCCCAGTCT
35465244 AAGATCAGAC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 18 0.82
27 4 0.18
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTGA
Found at i:35465953 original size:26 final size:26
Alignment explanation
Indices: 35465904--35465956 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
35465894 GTTGGCTTAG
*
35465904 GCATACGGAGTCCATTCTATGTCTAA
1 GCATACGGAGTCCATTCCATGTCTAA
*
35465930 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTCCATT-CCATGTCTAA
35465956 G
1 G
35465957 ATTTTAAGCT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTCCATTCCATGTCTAA
Found at i:35466042 original size:11 final size:11
Alignment explanation
Indices: 35466026--35466058 Score: 66
Period size: 11 Copynumber: 3.0 Consensus size: 11
35466016 CCCGAGGCAC
35466026 CATCGTCGGAG
1 CATCGTCGGAG
35466037 CATCGTCGGAG
1 CATCGTCGGAG
35466048 CATCGTCGGAG
1 CATCGTCGGAG
35466059 AGCCTAACCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.18, C:0.27, G:0.36, T:0.18
Consensus pattern (11 bp):
CATCGTCGGAG
Found at i:35466677 original size:25 final size:24
Alignment explanation
Indices: 35466632--35466680 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 24
35466622 GTTGACTTAG
*
35466632 GCATACGAAGTCATCCCAGTCTAA
1 GCATACGAAGTCATCCAAGTCTAA
*
35466656 GCATACGGAGTTCATCCAAGTCTAA
1 GCATACGAAG-TCATCCAAGTCTAA
35466681 CATCGACTGA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 9 0.41
25 13 0.59
ACGTcount: A:0.33, C:0.27, G:0.18, T:0.22
Consensus pattern (24 bp):
GCATACGAAGTCATCCAAGTCTAA
Found at i:35467168 original size:26 final size:26
Alignment explanation
Indices: 35467132--35467182 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
35467122 TGGCTTAGGT
35467132 ATACGGAGTTCATTCCAAGTCTAAGC
1 ATACGGAGTTCATTCCAAGTCTAAGC
**
35467158 ATACGGAGTTCATTCCCGGTCTAAG
1 ATACGGAGTTCATTCCAAGTCTAAG
35467183 ATTTTGAGCC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATTCCAAGTCTAAGC
Found at i:35468103 original size:170 final size:170
Alignment explanation
Indices: 35467779--35468106 Score: 392
Period size: 170 Copynumber: 1.9 Consensus size: 170
35467769 GAGGGTTGCG
* * * * * *
35467779 GCAGCCGGATCGATAGCACGTAGGGGGGACCGATTCGATCCCTGGTTTGCGCATTCTGCCTCTCC
1 GCAGCAGGATCGATAGCACGCAAGGAGGACCGAGTCGATCCCTGGCTTGCGCATTCTGCCTCTCC
* *
35467844 GGCCAGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCCAGT
66 AGCCAGCTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCCAGT
* * *
35467909 CTAAGATCAGACCAGACTGAGGGTTGTGCCAGTAGGACCA
131 CTAAGACCAGACCAAACCGAGGGTTGTGCCAGTAGGACCA
* *
35467949 GCAGCAGGATCGATAGCACGCAAGGAGGACC-AGGTCGATCCCTGGCTTGTGCATTTTGCCTCTC
1 GCAGCAGGATCGATAGCACGCAAGGAGGACCGA-GTCGATCCCTGGCTTGCGCATTCTGCCTCTC
* * * * * ** * **
35468013 TAGTCGGTTGAGCGCCCGTACGCTTGTTTCATGGGTTGGCTTCGGCATATGGAGTTCATT-CCAT
65 CAGCCAGCTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCCA-
*
35468077 GTCTAAGCCCCA-ACCAAACCGAGGGTTGTG
129 GTCTAAG-ACCAGACCAAACCGAGGGTTGTG
35468107 GGAGCATGAC
Statistics
Matches: 131, Mismatches: 24, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
169 4 0.03
170 125 0.95
171 2 0.02
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (170 bp):
GCAGCAGGATCGATAGCACGCAAGGAGGACCGAGTCGATCCCTGGCTTGCGCATTCTGCCTCTCC
AGCCAGCTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCCAGT
CTAAGACCAGACCAAACCGAGGGTTGTGCCAGTAGGACCA
Found at i:35468737 original size:26 final size:26
Alignment explanation
Indices: 35468707--35468757 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
35468697 TGGCATAGGG
*
35468707 ATACGGAGTTCATT-CCATGTCTAAGC
1 ATACGAAGTTCATTCCCA-GTCTAAGC
35468733 ATACGAAGTTCATTCCCAGTCTAAG
1 ATACGAAGTTCATTCCCAGTCTAAG
35468758 ATTTTGAGCC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (26 bp):
ATACGAAGTTCATTCCCAGTCTAAGC
Found at i:35469152 original size:25 final size:26
Alignment explanation
Indices: 35469101--35469152 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
35469091 GTTGACTTAG
*
35469101 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATAGGGAGTTCATCCCCAGTCTAA
*
35469127 GCATAGGGAGTTCAT-TCCAGTCTAA
1 GCATAGGGAGTTCATCCCCAGTCTAA
35469152 G
1 G
35469153 ATCGAATCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 10 0.42
26 14 0.58
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (26 bp):
GCATAGGGAGTTCATCCCCAGTCTAA
Found at i:35469595 original size:26 final size:26
Alignment explanation
Indices: 35469566--35469634 Score: 104
Period size: 26 Copynumber: 2.7 Consensus size: 26
35469556 GTTGGCTTAG
35469566 GCATACGGAGTTTATTCCATGTATAA
1 GCATACGGAGTTTATTCCATGTATAA
* *
35469592 GCATACGAAGTTCATTCCATGTATAA
1 GCATACGGAGTTTATTCCATGTATAA
35469618 GCATACGGA-TTTCATTC
1 GCATACGGAGTTT-ATTC
35469635 TAGTCTAAGA
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
25 2 0.05
26 36 0.95
ACGTcount: A:0.30, C:0.19, G:0.17, T:0.33
Consensus pattern (26 bp):
GCATACGGAGTTTATTCCATGTATAA
Found at i:35472344 original size:159 final size:159
Alignment explanation
Indices: 35472052--35472477 Score: 381
Period size: 159 Copynumber: 2.7 Consensus size: 159
35472042 ACGCAAAGGG
* * * * ** * * * ** *
35472052 GACCGGGCCGATCCCCGACTTGCGCATTCTTTCTCTCCGGTCGGCGGAGCGCCCGCATGCCCGTT
1 GACCGGGCCGATCCCCGCCATACGCATTATGCCTCTCCGGTCAGCTGAGCCCCCGCACACTCGTT
* * * * * *
35472117 TCGTGGGTTGGCTTAGGCATAGGGAGTTCGTTCCACGTCTAAGCCCCAACCAGACCGAGGGTTGT
66 TCATGGGTTGGCTTAGGCATACGGAGTTCATTCCACGTCTAAGACCCAACCAGACCGAGGATTAT
* *
35472182 GGCAGTGGGA-CAGGCAACACGTAGAGGGG-
131 GGCAGTAGGATC-GACAACACGTAG-GGGGA
* * * * ** ** **
35472211 GACCGGGCCGATCCCCGGCTTACGCATTATGCCTCTTCGGTCAGCTTAGTGCTTGCACGTTCGTT
1 GACCGGGCCGATCCCCGCCATACGCATTATGCCTCTCCGGTCAGCTGAGCCCCCGCACACTCGTT
* * ** * *
35472276 TCATGGGTTGACTTAGGCATACGGAGTTCATTCC-CAGTCTAAGATCGGATCGGACCGAGGATTA
66 TCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAC-GTCTAAGACCCAACCAGACCGAGGATTA
*
35472340 TGGCAGTAGGATCGACAGCACGTAGGGGGA
130 TGGCAGTAGGATCGACAACACGTAGGGGGA
* * * ** * **
35472370 GATCGGGTCGGTCCCCGCCATGTGCATTCTGCCTCTCCGGTTGGCTGAGCCCCCGCACACTCGTT
1 GACCGGGCCGATCCCCGCCATACGCATTATGCCTCTCCGGTCAGCTGAGCCCCCGCACACTCGTT
* *
35472435 CCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
66 TCATGGGTTGGCTTAGGCATACGGAGTTCATTCCACGTCTAAG
35472478 CATACGAAGT
Statistics
Matches: 212, Mismatches: 51, Indels: 8
0.78 0.19 0.03
Matches are distributed among these distances:
158 5 0.02
159 206 0.97
160 1 0.00
ACGTcount: A:0.17, C:0.28, G:0.31, T:0.24
Consensus pattern (159 bp):
GACCGGGCCGATCCCCGCCATACGCATTATGCCTCTCCGGTCAGCTGAGCCCCCGCACACTCGTT
TCATGGGTTGGCTTAGGCATACGGAGTTCATTCCACGTCTAAGACCCAACCAGACCGAGGATTAT
GGCAGTAGGATCGACAACACGTAGGGGGA
Found at i:35472480 original size:26 final size:26
Alignment explanation
Indices: 35472451--35472503 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35472441 GTTGGCTTAG
*
35472451 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
35472477 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
35472503 G
1 G
35472504 ATCGGACTAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:35472855 original size:26 final size:27
Alignment explanation
Indices: 35472814--35472868 Score: 85
Period size: 26 Copynumber: 2.1 Consensus size: 27
35472804 CGTGAGTTGA
35472814 CTTAGGCATACAGAGTTCATCCCTAGT
1 CTTAGGCATACAGAGTTCATCCCTAGT
* *
35472841 CTTA-GCATACGGAGTTCATTCCTAGT
1 CTTAGGCATACAGAGTTCATCCCTAGT
35472867 CT
1 CT
35472869 AAGATCGGAC
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.24, C:0.25, G:0.18, T:0.33
Consensus pattern (27 bp):
CTTAGGCATACAGAGTTCATCCCTAGT
Found at i:35473347 original size:158 final size:157
Alignment explanation
Indices: 35472841--35473504 Score: 563
Period size: 158 Copynumber: 4.2 Consensus size: 157
35472831 CATCCCTAGT
* * *
35472841 CTTA-GCATACGGAGTTCATTCCTAGTCTAAGATCGGACCGGATCGAGGGTTGCGGCAACAAGAT
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GAACGGACCGAGGGTTGCGGCAACAAGAT
** * * * * *
35472905 CGGTAGCACGCAGGGGGGATCGGATCGATCCCCTG-CTTACACATTCTGCATCTCCGGCCGGCTG
65 CGACAGCACGCAGGGGGGATCGGGTCGATCCCC-GACTTACGCATTCTGCCTCTCCGACTGGCTG
* * * * * *
35472969 AGCACCCGCCCTCCCATTTCGTAGGTTGG
129 AGCACCCGCACGCTCGTTTCGTGGGTTGA
* ** * * * * *
35472998 CTTAGGCATATGGAGTTCATT-CCATGTCTAAGCCCCAGCTGAACCAAGGGTTGTGGCAAC-AGA
1 CTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATCGAAC-GGACCGAGGGTTGCGGCAACAAG-
** * * * * * * * * * *
35473061 ATCGGTAGCACGTAGTGAGGGAACGGGTCGATCCTCAAC-TGCGCATTATGCTTCTTCGATTGGC
63 ATCGACAGCACGCAG-GGGGGATCGGGTCGATCCCCGACTTACGCATTCTGCCTCTCCGACTGGC
* * *
35473125 TTAGCACCCGCATGCTCGTTTCATGGGTTGA
127 TGAGCACCCGCACGCTCGTTTCGTGGGTTGA
* * * * *
35473156 CTTATGCATACTGAGTTCATTCCCAGTCTAAGATCGAACAAGACCGAGGGTTGTGGCAGCAAGAT
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAAC-GGACCGAGGGTTGCGGCAACAAGAT
* *
35473221 CGACAGCACGTAGGGGGGA-CTGGGTCGATCCCCGACTTATGCATTCTGCCTCTCCGACTGGCTG
65 CGACAGCACGCAGGGGGGATC-GGGTCGATCCCCGACTTACGCATTCTGCCTCTCCGACTGGCTG
35473285 AGCACCCGCACGCTCGTTTCGTGGGTTGA
129 AGCACCCGCACGCTCGTTTCGTGGGTTGA
* * * * * * *
35473314 CTTATGCATACGGAGTTGATTCCCAGTCTAAGATCGGATCGGATCGAAGGTTGCGACAGCAAGAT
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GAACGGACCGAGGGTTGCGGCAACAAGAT
** * * * * ** **
35473379 AAACAGCACACAGGGGGGGATCGGGTCGGTCCCCGGCATGTGCATTCTGCCTCTCCGACTGATTG
65 CGACAGCACGCA-GGGGGGATCGGGTCGATCCCCGACTTACGCATTCTGCCTCTCCGACTGGCTG
* *
35473444 AGC-CCTCGTACAG-TCGTTTCGTGGGTTGT
129 AGCACC-CGCAC-GCTCGTTTCGTGGGTTGA
35473473 CTTAGGCATACGGAGTTCATT-CCATGTCTAAG
1 CTTAGGCATACGGAGTTCATTCCCA-GTCTAAG
35473505 CATACGAAGT
Statistics
Matches: 410, Mismatches: 81, Indels: 30
0.79 0.16 0.06
Matches are distributed among these distances:
156 1 0.00
157 28 0.07
158 262 0.64
159 117 0.29
160 2 0.00
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.25
Consensus pattern (157 bp):
CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACGGACCGAGGGTTGCGGCAACAAGATC
GACAGCACGCAGGGGGGATCGGGTCGATCCCCGACTTACGCATTCTGCCTCTCCGACTGGCTGAG
CACCCGCACGCTCGTTTCGTGGGTTGA
Found at i:35473482 original size:159 final size:158
Alignment explanation
Indices: 35473127--35473504 Score: 460
Period size: 159 Copynumber: 2.4 Consensus size: 158
35473117 CGATTGGCTT
* * *
35473127 AGCACCCGCATGCTCGTTTCATGGGTTGACTTATGCATACTGAGTTCATTCCCAGTCTAAGATCG
1 AGCACCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAGATCG
* * * ** **
35473192 AACAAGACCGAGGGTTGTGGCAGCAAGATCGACAGCACGTAGGGGGGACTGGGTCGATCCCCGAC
66 AACAAGACCGAAGGTTGCGACAGCAAGATAAACAGCACACAGGGGGGACTGGGTCGATCCCCGAC
* *
35473257 TTATGCATTCTGCCTCTCCGACTGGCTG
131 ATATGCATTCTGCCTCTCCGACTGACTG
*
35473285 AGCACCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTGATTCCCAGTCTAAGATCG
1 AGCACCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAGATC-
* * * *
35473350 GATC-GGATCGAAGGTTGCGACAGCAAGATAAACAGCACACAGGGGGGGA-TCGGGTCGGTCCCC
65 GAACAAGACCGAAGGTTGCGACAGCAAGATAAACAGCACACA-GGGGGGACT-GGGTCGATCCCC
* * *
35473413 GGCATGTGCATTCTGCCTCTCCGACTGATTG
128 GACATATGCATTCTGCCTCTCCGACTGACTG
* * *
35473444 AGC-CCTCGTACAG-TCGTTTCGTGGGTTGTCTTAGGCATACGGAGTTCATT-CCATGTCTAAG
1 AGCACC-CGCAC-GCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCA-GTCTAAG
35473505 CATACGAAGT
Statistics
Matches: 190, Mismatches: 24, Indels: 11
0.84 0.11 0.05
Matches are distributed among these distances:
158 94 0.49
159 95 0.50
160 1 0.01
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.25
Consensus pattern (158 bp):
AGCACCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAGATCG
AACAAGACCGAAGGTTGCGACAGCAAGATAAACAGCACACAGGGGGGACTGGGTCGATCCCCGAC
ATATGCATTCTGCCTCTCCGACTGACTG
Found at i:35473508 original size:26 final size:26
Alignment explanation
Indices: 35473478--35473530 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
35473468 GTTGTCTTAG
*
35473478 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
35473504 GCATACGAAGTTTATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
35473530 G
1 G
35473531 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:35474270 original size:26 final size:26
Alignment explanation
Indices: 35474234--35474293 Score: 102
Period size: 26 Copynumber: 2.3 Consensus size: 26
35474224 TAGGCAAACT
35474234 GAGTTCATCCCTAGTCTAAGCATACG
1 GAGTTCATCCCTAGTCTAAGCATACG
* *
35474260 GAGTTCATCCCTAGTCTAGGCATATG
1 GAGTTCATCCCTAGTCTAAGCATACG
35474286 GAGTTCAT
1 GAGTTCAT
35474294 TCCCAGTGTA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 32 1.00
ACGTcount: A:0.25, C:0.23, G:0.22, T:0.30
Consensus pattern (26 bp):
GAGTTCATCCCTAGTCTAAGCATACG
Found at i:35476771 original size:158 final size:159
Alignment explanation
Indices: 35476371--35476866 Score: 439
Period size: 158 Copynumber: 3.1 Consensus size: 159
35476361 CTAAGAATAT
* ** * * ** *
35476371 GGAGTTCATTCCCAGTCTAAGATGGGACCGAATTGAGGGTTGTGGCAACAGGATTGGTAGCACCC
1 GGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGTGGCAGCAGGATCGACAGCACAC
* * * *
35476436 AGGGGGGATCGAGTCGATCCATGGCTTACGCATTTTGCCT-TTCCGGTCGGCTGAGCGCCCGCAC
66 AGGGGGGATCGGGTCGATCCATGGCTTGCGCATTCTGCCTCTTCCGGTCGGCTCAGCGCCCGCAC
* * *
35476500 GCCTGTTTCATGGGTTGGCTTAGGCATAG
131 GCCTATTTCATGGGTTGACTTAGGCATAC
** * ** *** * * *
35476529 GGAGTTCATTCCGTGTCTAAG-CCCCAGTTAGACCGAGGGTTGTGGTAGCGGGACCGACAGCACA
1 GGAGTTCATTCCCAGTCTAAGATCGGACCGA-ACCGAGGGTTGTGGCAGCAGGATCGACAGCACA
* * * * ** * *
35476593 CAAAGAGGGACCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTT-CGGTCGGCTCAGC-CCCGT
65 C-AGGGGGGATCGGGTCGATCCATGGCTTGCGCATTCTGCCTCTTCCGGTCGGCTCAGCGCCCGC
* *
35476656 ACG-CTCATTTCATGGGTTGACTTATGCATTC
129 ACGCCT-ATTTCATGGGTTGACTTAGGCATAC
* * **
35476687 GGAGTTCATTCCCAATCTAAGATCGGACCGAACCGAGGGTTGTGGCAGCAGGATCAACAGCATGC
1 GGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGTGGCAGCAGGATCGACAGCACAC
* * ** * *
35476752 AGGGGGTGATCGGGTCGATCCTTGGCTTGCGCATTCTGCCTC-TCCAGTCAACTGAGCGCCTGCA
66 AGGGGG-GATCGGGTCGATCCATGGCTTGCGCATTCTGCCTCTTCCGGTCGGCTCAGCGCCCGCA
** * * *
35476816 CGTTTGTTTCGTGGGTTGGCTTAGGCATAC
130 CGCCTATTTCATGGGTTGACTTAGGCATAC
35476846 GGAGTTCATT-CCATGTCTAAG
1 GGAGTTCATTCCCA-GTCTAAG
35476867 CATACGTACT
Statistics
Matches: 257, Mismatches: 71, Indels: 19
0.74 0.20 0.05
Matches are distributed among these distances:
157 9 0.04
158 158 0.61
159 87 0.34
160 3 0.01
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.25
Consensus pattern (159 bp):
GGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGTGGCAGCAGGATCGACAGCACAC
AGGGGGGATCGGGTCGATCCATGGCTTGCGCATTCTGCCTCTTCCGGTCGGCTCAGCGCCCGCAC
GCCTATTTCATGGGTTGACTTAGGCATAC
Found at i:35476879 original size:26 final size:26
Alignment explanation
Indices: 35476840--35476892 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
35476830 GTTGGCTTAG
*
35476840 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGACTTCATTCCCA-GTCTAA
*
35476866 GCATACGTACTTCATTCCCAGTCTAA
1 GCATACGGACTTCATTCCCAGTCTAA
35476892 G
1 G
35476893 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGGACTTCATTCCCAGTCTAA
Found at i:35477699 original size:26 final size:26
Alignment explanation
Indices: 35477670--35477722 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
35477660 GTTGGCTTAG
35477670 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCAT-TCTAA
35477696 GCATACGGAGTTCATTCCCATTCTAA
1 GCATACGGAGTTCATTCCCATTCTAA
35477722 G
1 G
35477723 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCATTCTAA
Found at i:35477897 original size:26 final size:26
Alignment explanation
Indices: 35477868--35477918 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
35477858 TTGGCTTAGG
35477868 CATACGGAGTTCATTCC-ATGTCTAAA
1 CATACGGAGTTCATTCCTA-GTCTAAA
35477894 CATACGGAGTTCATTCCTAGTCTAA
1 CATACGGAGTTCATTCCTAGTCTAA
35477919 GATTTTGAGC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.31
Consensus pattern (26 bp):
CATACGGAGTTCATTCCTAGTCTAAA
Found at i:35478637 original size:26 final size:25
Alignment explanation
Indices: 35478598--35478649 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 25
35478588 GTTGACATAG
*
35478598 GCATACGGACTTCATCCCCAGTCTAA
1 GCATACAGACTTCAT-CCCAGTCTAA
* *
35478624 GCATACAGAGTTCATTCCAGTCTAA
1 GCATACAGACTTCATCCCAGTCTAA
35478649 G
1 G
35478650 ATCAAACCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 10 0.43
26 13 0.57
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (25 bp):
GCATACAGACTTCATCCCAGTCTAA
Found at i:35478953 original size:159 final size:159
Alignment explanation
Indices: 35478657--35478968 Score: 344
Period size: 159 Copynumber: 2.0 Consensus size: 159
35478647 AAGATCAAAC
* * * *
35478657 CGGATCGAGGGTTGTGGCAGCGGGACCGGCAGCACACAGA-AGGGGACCAGG-CTGATCCTCGAC
1 CGGACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGA-GGGACCGGGTC-GATCCTCGAC
** * * * * ** * *
35478720 TTGTGCATTATGCCTCTTC-AGCCGGGTTAGTGCCTACACGCCCGTTTCGTGGGTTGGCTTAGGT
64 TTACGCATTATGCCTCTCCGA-CCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGC
* * * *
35478784 ACAGGGAGTTCATTTCACGTCTAAGCCCCAGT
128 ATAGGAAGTTCATTCCATGTCTAAGCCCCAGT
* * *
35478816 CGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGAGAGACCGGGTCGATCCTCGACTT
1 CGGACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGAGGGACCGGGTCGATCCTCGACTT
*
35478881 ACGCATTATGCCTCTCCGACCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
66 ACGCATTATGCCTCTCCGACCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATA
* *
35478946 CGAAGTTCATCCCCA-GTCTAAGC
131 GGAAGTTCAT-TCCATGTCTAAGC
35478969 ATATGAAGTT
Statistics
Matches: 126, Mismatches: 23, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
159 121 0.96
160 5 0.04
ACGTcount: A:0.19, C:0.29, G:0.31, T:0.21
Consensus pattern (159 bp):
CGGACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGAGGGACCGGGTCGATCCTCGACTT
ACGCATTATGCCTCTCCGACCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATA
GGAAGTTCATTCCATGTCTAAGCCCCAGT
Found at i:35478977 original size:26 final size:26
Alignment explanation
Indices: 35478941--35478993 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
35478931 GTTGACTTAG
*
35478941 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* *
35478967 GCATATGAAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
35478993 G
1 G
35478994 ATCAGATCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:35479171 original size:344 final size:341
Alignment explanation
Indices: 35478558--35480899 Score: 1541
Period size: 344 Copynumber: 6.9 Consensus size: 341
35478548 CCTCTCTAGT
* * * * *
35478558 CGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACATAGGCATACGGACTTCATCCCCAGTCTA
1 CGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTA
* * * * * * * *
35478623 AGCATACAGAGTTCATT-CCAGTCTAAGATCAAACCGGATCGAGGGTTGTGGCAGCGGGACCGGC
66 AGCATAGA-AGTTCATTCCCAATCTAAGATCAGATCGGATCGAGGGTTGCGGCAGCAGGATCGAC
** * * * * * * * * * ** * *
35478687 AGCACACAGAAGGGGACCAGGCTGATCCTCGACTTGTGCATTATGCCTCTTC-AGCCGGGTTAGT
130 AGCACGTA-AGGGGGATCGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGA-TCGACTGAGC
* * * * *
35478751 GCCTACACGCCCGTTTCGTGGGTTGGCTTAGGTACAGGGAGTTCATTTCACGTCTAAGCCCCAGT
193 GCC-GCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGT
* *
35478816 CGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGAGAGACCGGGTCGATCCTCGACTT
257 CGGACCGAGGGTTGTGGCAGCGGGATCGACAGCACGCAGAGAGGGACCGGGTCGATCCTCGACTT
35478881 ACGCATTATGCCTCTCCGAC
322 ACGCATTATGCCTCTCCGAC
35478901 CGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTA
1 CGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTA
* *
35478966 AGCATATGAAGTTCATTCCCAATCTAAGATCAGATC-GAACTGAGGGTTGCGGTAGCAGGATCGA
66 AGCATA-GAAGTTCATTCCCAATCTAAGATCAGATCGGATC-GAGGGTTGCGGCAGCAGGATCGA
*
35479030 CAGCACGTAAGGGAGGATCGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGACCGACTGAGC
129 CAGCACGTAAGGG-GGATCGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGATCGACTGAGC
* ** *
35479095 GCTCGCATGATCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCGCAGT
193 GC-CGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGT
* * * *
35479160 GGGACCGAGGGTTGTGGCAGCGGGA-CCAGCAGCATC-CAGA-AGGGGACCGGTTCAATCCTCGA
257 CGGACCGAGGGTTGTGGCAGCGGGATCGA-CAGCA-CGCAGAGA-GGGACCGGGTCGATCCTCGA
* * *
35479222 CCTATGCATTATGCCCCTCCGAC
319 CTTACGCATTATGCCTCTCCGAC
* *
35479245 TGGCTCAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGAAGTTCAT-CCCAGTCTA
1 CGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTA
* * * * *
35479309 AGCATACGAAGTTCATTCCCAGTCTAAGATCGGATCGGATCAAGGGTTGCGGCAACAAGATCGAC
66 AGCATA-GAAGTTCATTCCCAATCTAAGATCAGATCGGATCGAGGGTTGCGGCAGCAGGATCGAC
* * *
35479374 AGCATGT-AGAGGGGATCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGATC-AGCTGAGC
130 AGCACGTAAG-GGGGATCGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGATCGA-CTGAGC
* * * *
35479437 GCTCGTACGCCCTTTTCGTGGGTTGGCTGAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCCGT
193 GC-CGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGT
* * * * **
35479502 CGGACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAAAGGGGGACCGGG-CTGATCCCCGGTT
257 CGGACCGAGGGTTGTGGCAGCGGGATCGACAGCACGCAGAGAGGGACCGGGTC-GATCCTCGACT
* * * **
35479566 TGCGCATTATACCTCTTCGGTT
321 TACGCATTATGCCTC-TCCGAC
* * * * * * * *
35479588 CGG-TTAGC-CGCCACACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCAT-TCCATGTC
1 CGGCTCAGCGC-CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCA-GTC
*** ** * * * * * * * ** **
35479650 TAAGC--CCCAGTGGGA--CCGAGGGT-TATG-GCAG--CGGGACCAACAGCATGCAGAAGGGGA
64 TAAGCATAGAAGT-TCATTCCCA--ATCTAAGATCAGATC-GGATCGA-GGGTTGC-G--GCAG-
* * * * * * *** ** * * **
35479707 CCGGTTCGATCCTTG-AC-TTA--TGCATTATGCCCCTCCGACCGGCTCAACGCCCGCACGCT-C
120 CAGGATCGA--C-AGCACGTAAGGGGGATCGGGCCGATCC--CCGGCT---TG--TGCATTCTGC
* * * * * * ** ** * ***** * * * *
35479767 GTTTCATGGGTTGACTTAG-G-CATACG-AAG-TTCATCCCCAGTC-TAAGCATACGAAGTTCAT
175 CTCTC--CGATCGACTGAGCGCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCAT
** * * * * * ** * * * *
35479827 TCCCA-GTCTAAG-ATCGGATCGGATCGAGCGTTGCGGCAACAAGATCGATAGCATGTAG-GGGG
238 T-CCATGTCTAAGCCCCAG-TCGGACCGAGGGTTGTGGCAGCGGGATCGACAGCACGCAGAGAGG
* * * * *
35479889 GACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGAT
301 GACCGGGTCGATCCTCGACTTACGCATTATGCCTCTCCGAC
** * * * * * * * * * * *
35479930 CAACTGAGCGCTCGTACGCCCTTTTCGTGGGTTGGCTGAGGCATAGGGAGTTCAT-TCCA-TGT-
1 CGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTA
* * * * * **
35479992 --C-T--AAG--C---CCC---C----A-C----CGGACCGAGGGTTGTGGTAGCGGGACCGGTA
66 AGCATAGAAGTTCATTCCCAATCTAAGATCAGATCGGATCGAGGGTTGCGGCAGCAGGATCGACA
* * * ** ** * * * ** *
35480035 GCACGCAGAGGGGGA-CTGGGCTGATCCTCGTTTTACGCATTATGCCTCTTCGGTCGGGTTAGCG
131 GCACGTA-AGGGGGATC-GGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGATCGACTGAGC-
* * *
35480099 GCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCC
193 GCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTC
**
35480164 GGACCGAGGGTTGTGGCAGCGGGATCGACAGCACGCAGAGAGGGACCGGGTCGATCCTTAACTTA
258 GGACCGAGGGTTGTGGCAGCGGGATCGACAGCACGCAGAGAGGGACCGGGTCGATCCTCGACTTA
**
35480229 CGCATTATGCCTCTCCGGT
323 CGCATTATGCCTCTCCGAC
* * * *
35480248 CGACTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTACGCATACGAAGTTCATCCCTAGTCTA
1 CGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTA
* * * * *
35480313 AGCATACAGAGTTCATTCCCAATCTAAGATCAGATCGGATCGA-----G-GGCAGTAGAAGCGGC
66 AGCATAGA-AGTTCATTCCCAATCTAAGATCAGATCGGATCGAGGGTTGCGGCAGCAGGATCGAC
* * * * *
35480372 AACACGT-AGGGGGATCGGGTCGATCCTCGGCTTGTGCATTCTGCCTCTTCTG-TCGGCTGAGCG
130 AGCACGTAAGGGGGATCGGGCCGATCCCCGGCTTGTGCATTCTGCCTC-TCCGATCGACTGAGCG
* * * * *
35480435 CCCGTATGCCTGTTTCGTGGGTTGGCTTAGGCATAGGGAATTCATTCCATGTCTAAGCTCCAGTC
194 -CCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTC
* * * *
35480500 GGACCGAGGGTTGTGGCAGCGGGACCAACAGCACGCAGA-AGGGGATCGGTTCGATCCTCGACTT
258 GGACCGAGGGTTGTGGCAGCGGGATCGACAGCACGCAGAGA-GGGACCGGGTCGATCCTCGACTT
35480564 ACGCATTATGCCTCTCCGAC
322 ACGCATTATGCCTCTCCGAC
* *
35480584 CGGCTCAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTA
1 CGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTA
* * * * * *
35480649 AGCATACGAAGTCCATTCCCAATCTAAGATCGGATCGGATCAAGGGTTGCGCCAACAAGATCGAC
66 AGCATA-GAAGTTCATTCCCAATCTAAGATCAGATCGGATCGAGGGTTGCGGCAGCAGGATCGAC
* * * *
35480714 AGCATGTAAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGATC-AGCTGAGT
130 AGCACGTAA-GGGGGATCGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGATCGA-CTGAG-
* * * * * * * *
35480778 AGCCGTACGCCCTTTTCATGGGTTAGCTTAGGCATAGGGAGTTCATTCCATGTCGAAGCCCCTGC
192 CGCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGT
* * * * * **
35480843 CGGACCGAGGGTTGTGGCAGCTGGACCTACAACACGCA-AGGGGGGTCGGGTCGATCC
257 CGGACCGAGGGTTGTGGCAGCGGGATCGACAGCACGCAGAGAGGGACCGGGTCGATCC
35480900 CTGGCTTGCG
Statistics
Matches: 1544, Mismatches: 346, Indels: 218
0.73 0.16 0.10
Matches are distributed among these distances:
311 8 0.01
312 5 0.00
313 4 0.00
314 5 0.00
315 3 0.00
316 10 0.01
317 62 0.04
318 83 0.05
319 9 0.01
320 3 0.00
321 3 0.00
322 6 0.00
323 2 0.00
324 1 0.00
325 1 0.00
326 1 0.00
327 2 0.00
329 1 0.00
332 3 0.00
333 2 0.00
335 3 0.00
336 267 0.17
337 7 0.00
338 21 0.01
339 11 0.01
340 8 0.01
341 10 0.01
342 233 0.15
343 275 0.18
344 454 0.29
345 16 0.01
346 1 0.00
347 6 0.00
348 4 0.00
349 7 0.00
350 6 0.00
351 1 0.00
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.23
Consensus pattern (341 bp):
CGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTA
AGCATAGAAGTTCATTCCCAATCTAAGATCAGATCGGATCGAGGGTTGCGGCAGCAGGATCGACA
GCACGTAAGGGGGATCGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGATCGACTGAGCGCC
GCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGA
CCGAGGGTTGTGGCAGCGGGATCGACAGCACGCAGAGAGGGACCGGGTCGATCCTCGACTTACGC
ATTATGCCTCTCCGAC
Found at i:35479319 original size:25 final size:26
Alignment explanation
Indices: 35479285--35479336 Score: 97
Period size: 25 Copynumber: 2.0 Consensus size: 26
35479275 GTTGACTTAG
35479285 GCATACGAAGTTCA-TCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
35479310 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
35479336 G
1 G
35479337 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 14 0.54
26 12 0.46
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:35479620 original size:159 final size:161
Alignment explanation
Indices: 35479384--35480315 Score: 614
Period size: 159 Copynumber: 5.7 Consensus size: 161
35479374 AGCATGTAGA
* * * * * *
35479384 GGGGATCGGGCT-GATCCCCGGCTTGCGCATTCTGCCTC-TCCGATCAGCTGAG-CGCTCGTACG
1 GGGGACCGGGCTCGATCCCCGGCTTACGCATTATGCCTCTTCCGATCAGGTTAGCCGC-CGCACG
* * * *
35479446 CCCTTTTCGTGGGTTGGCTGAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCCGTCGGACCGAG
65 CCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAG
35479511 GGTTGTGGCAGCGGGACCGACAGCACGCAAAG
130 GGTTGTGGCAGCGGGACCGACAGCACGCAAAG
* * * * * *
35479543 GGGGACCGGGCT-GATCCCCGGTTTGCGCATTATACCTCTTCGGTTC-GGTTAGCCGCCACACGC
1 GGGGACCGGGCTCGATCCCCGGCTTACGCATTATGCCTCTTCCGATCAGGTTAGCCGCCGCACGC
*
35479606 CCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTGGGACCGAGG
66 CCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGG
* * *
35479671 GTTATGGCAGCGGGACCAACAGCATGCAGAA-
131 GTTGTGGCAGCGGGACCGACAGCACGCA-AAG
* ** * * * * * *
35479702 GGGGACC-GGTTCGATCCTTGACTTATGCATTATGCC-CCTCCGA-CCGGCTCA-ACGCCCGCAC
1 GGGGACCGGGCTCGATCCCCGGCTTACGCATTATGCCTCTTCCGATCAGG-TTAGCCG-CCGCAC
* * * * * ** *
35479763 GCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCCA-GTCTAAGCATACGAAGTTCAT
64 GCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCAT-TCCATGTCTAAGC---CCCAG-TC-G
** * * * * * * *
35479827 TCCCAGTCTAAGATCGGATCGGATCGAGCGTTGCG-GCAACAAGATCGATAGCATGTAGG
123 GACC-G---AGGGT-TG-T-GG--C-AGCG--G-GACCGAC-AG--C-A-CGCA---AAG
* * ** * *
35479886 GGGGACCGGG-TCGATCCCCGGCTTGCGCATTCTGCCTC-TCCGATCAACTGAG-CGCTCGTACG
1 GGGGACCGGGCTCGATCCCCGGCTTACGCATTATGCCTCTTCCGATCAGGTTAGCCGC-CGCACG
* * * *
35479948 CCCTTTTCGTGGGTTGGCTGAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCCA-CCGGACCGA
65 CCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG-CCCCAGTCGGACCGA
* ** *
35480012 GGGTTGTGGTAGCGGGACCGGTAGCACGCAGAG
129 GGGTTGTGGCAGCGGGACCGACAGCACGCAAAG
* * ** * * *
35480045 GGGGACTGGGCT-GATCCTCGTTTTACGCATTATGCCTCTT-CGGTCGGGTTAGCGGCCGCACGC
1 GGGGACCGGGCTCGATCCCCGGCTTACGCATTATGCCTCTTCCGATCAGGTTAGCCGCCGCACGC
* *
35480108 CCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCGGACCGAGG
66 CCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGG
* *
35480173 GTTGTGGCAGCGGGATCGACAGCACGCAGAG
131 GTTGTGGCAGCGGGACCGACAGCACGCAAAG
* **** * * *
35480204 AGGGACCGGG-TCGATCCTTAACTTACGCATTATGCCTC-TCCGGTC-GACTCAG-CGCCCGCAC
1 GGGGACCGGGCTCGATCCCCGGCTTACGCATTATGCCTCTTCCGATCAG-GTTAGCCG-CCGCAC
* * * * * *
35480265 GCTCGTTTCATGGGTTGACTTACGCATACGAAGTTCA-TCCCTAGTCTAAGC
64 GCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCAT-GTCTAAGC
35480316 ATACAGAGTT
Statistics
Matches: 599, Mismatches: 123, Indels: 102
0.73 0.15 0.12
Matches are distributed among these distances:
157 1 0.00
158 23 0.04
159 412 0.69
160 17 0.03
162 6 0.01
163 2 0.00
164 3 0.01
165 1 0.00
166 3 0.01
167 2 0.00
168 3 0.01
169 4 0.01
170 1 0.00
171 2 0.00
172 2 0.00
173 2 0.00
174 5 0.01
175 3 0.01
176 5 0.01
177 3 0.01
178 1 0.00
179 3 0.01
180 2 0.00
181 3 0.01
182 2 0.00
183 5 0.01
184 78 0.13
185 5 0.01
ACGTcount: A:0.18, C:0.28, G:0.30, T:0.23
Consensus pattern (161 bp):
GGGGACCGGGCTCGATCCCCGGCTTACGCATTATGCCTCTTCCGATCAGGTTAGCCGCCGCACGC
CCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGG
GTTGTGGCAGCGGGACCGACAGCACGCAAAG
Found at i:35479816 original size:26 final size:26
Alignment explanation
Indices: 35479786--35479838 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
35479776 GTTGACTTAG
35479786 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
35479812 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
35479838 G
1 G
35479839 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:35480010 original size:502 final size:501
Alignment explanation
Indices: 35479106--35480543 Score: 2121
Period size: 502 Copynumber: 2.9 Consensus size: 501
35479096 CTCGCATGAT
* *
35479106 CGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCGCAGTGGGACCGAGGG
1 CGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTGGGACCGAGGG
* * * * *
35479171 TTGTGGCAGCGGGACCAGCAGCATCCAGAAGGGGACCGGTTCAATCCTCGACCTATGCATTATGC
66 TTGTGGCAGCGGGACCAACAGCATGCAGAAGGGGACCGGTTCGATCCTTGACTTATGCATTATGC
* **
35479236 CCCTCCGACTGGCTCAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGAAGTTCAT-
131 CCCTCCGACCGGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATC
*
35479300 CCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGATCGGATCAAGGGTTGCGGCAAC
196 CCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGATCGGATCGA-GGTTGCGGCAAC
*
35479365 AAGATCGACAGCATGTAGAGGGGATCGGG-CTGATCCCCGGCTTGCGCATTCTGCCTCTCCGATC
260 AAGATCGACAGCATGTAGGGGGGATCGGGTC-GATCCCCGGCTTGCGCATTCTGCCTCTCCGATC
35479429 AGCTGAGCGCTCGTACGCCCTTTTCGTGGGTTGGCTGAGGCATAGGGAGTTCATTCCATGTCTAA
324 AGCTGAGCGCTCGTACGCCCTTTTCGTGGGTTGGCTGAGGCATAGGGAGTTCATTCCATGTCTAA
*
35479494 GCCCCCGTCGGACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAAAGGGGGACCGGGCTGATC
389 GCCCCCATCGGACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAAAGGGGGACCGGGCTGATC
*
35479559 CCCGGTTTGCGCATTATACCTCTTCGGTTC-GGTTAGCCGCCACACGCC
454 CCCGGTTTACGCATTATACCTCTTCGG-TCGGGTTAGCCGCCACACGCC
35479607 CGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTGGGACCGAGGG
1 CGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTGGGACCGAGGG
*
35479672 TTATGGCAGCGGGACCAACAGCATGCAGAAGGGGACCGGTTCGATCCTTGACTTATGCATTATGC
66 TTGTGGCAGCGGGACCAACAGCATGCAGAAGGGGACCGGTTCGATCCTTGACTTATGCATTATGC
*
35479737 CCCTCCGACCGGCTCAACGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATC
131 CCCTCCGACCGGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATC
35479802 CCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGCGTTGCGGCAAC
196 CCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAG-GTTGCGGCAAC
* *
35479867 AAGATCGATAGCATGTAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCA
260 AAGATCGACAGCATGTAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCA
*
35479932 ACTGAGCGCTCGTACGCCCTTTTCGTGGGTTGGCTGAGGCATAGGGAGTTCATTCCATGTCTAAG
325 GCTGAGCGCTCGTACGCCCTTTTCGTGGGTTGGCTGAGGCATAGGGAGTTCATTCCATGTCTAAG
* * ** * *
35479997 CCCCCACCGGACCGAGGGTTGTGGTAGCGGGACCGGTAGCACGCAGAGGGGGACTGGGCTGATCC
390 CCCCCATCGGACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAAAGGGGGACCGGGCTGATCC
* * * * *
35480062 TCGTTTTACGCATTATGCCTCTTCGGTCGGGTTAGCGGCCGCACGCC
455 CCGGTTTACGCATTATACCTCTTCGGTCGGGTTAGCCGCCACACGCC
* **
35480109 CGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCGGACCGAGGG
1 CGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTGGGACCGAGGG
* * * * * *
35480174 TTGTGGCAGCGGGATCGACAGCACGCAG-AGAGGGACCGGGTCGATCCTTAACTTACGCATTATG
66 TTGTGGCAGCGGGACCAACAGCATGCAGAAG-GGGACCGGTTCGATCCTTGACTTATGCATTATG
* ** * *
35480238 CCTCTCCGGTCGACTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTACGCATACGAAGTTCAT
130 CCCCTCCGACCGGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCAT
* * * * *
35480303 CCCTAGTCTAAGCATAC-AGAGTTCATTCCCAATCTAAGATCAGATCGGATCGAGG--GCAG-TA
195 CCCCAGTCTAAGCATACGA-AGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGTTGCGGCAA
* * * * * * *
35480364 GAAG--CGGCAACACGTA-GGGGGATCGGGTCGATCCTCGGCTTGTGCATTCTGCCTCTTCTG-T
259 CAAGATCGACAGCATGTAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTC-TCCGAT
* * * * *
35480425 CGGCTGAGCGCCCGTATG-CCTGTTTCGTGGGTTGGCTTAGGCATAGGGAATTCATTCCATGTCT
323 CAGCTGAGCGCTCGTACGCCCT-TTTCGTGGGTTGGCTGAGGCATAGGGAGTTCATTCCATGTCT
* *
35480489 AAG-CTCCAGTCGGACCGAGGGTTGTGGCAGCGGGACCAACAGCACGCAGAAGGGG
387 AAGCCCCCA-TCGGACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCA-AAGGGG
35480544 ATCGGTTCGA
Statistics
Matches: 854, Mismatches: 73, Indels: 25
0.90 0.08 0.03
Matches are distributed among these distances:
494 7 0.01
495 128 0.15
496 16 0.02
498 4 0.00
499 3 0.00
501 189 0.22
502 506 0.59
503 1 0.00
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.23
Consensus pattern (501 bp):
CGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTGGGACCGAGGG
TTGTGGCAGCGGGACCAACAGCATGCAGAAGGGGACCGGTTCGATCCTTGACTTATGCATTATGC
CCCTCCGACCGGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATC
CCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGTTGCGGCAACA
AGATCGACAGCATGTAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCAG
CTGAGCGCTCGTACGCCCTTTTCGTGGGTTGGCTGAGGCATAGGGAGTTCATTCCATGTCTAAGC
CCCCATCGGACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAAAGGGGGACCGGGCTGATCCC
CGGTTTACGCATTATACCTCTTCGGTCGGGTTAGCCGCCACACGCC
Found at i:35480338 original size:26 final size:26
Alignment explanation
Indices: 35480288--35480340 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
35480278 GTTGACTTAC
*
35480288 GCATACGAAGTTCATCCCTAGTCTAA
1 GCATACGAAGTTCATCCCTAATCTAA
35480314 GCATAC-AGAGTTCATTCCC-AATCTAA
1 GCATACGA-AGTTCA-TCCCTAATCTAA
35480340 G
1 G
35480341 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 1 0.04
26 19 0.79
27 4 0.17
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCTAATCTAA
Found at i:35480654 original size:26 final size:26
Alignment explanation
Indices: 35480624--35480676 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
35480614 GTTGACTTAG
* *
35480624 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTCCATCCCCAATCTAA
*
35480650 GCATACGAAGTCCATTCCCAATCTAA
1 GCATACGAAGTCCATCCCCAATCTAA
35480676 G
1 G
35480677 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.30, G:0.15, T:0.23
Consensus pattern (26 bp):
GCATACGAAGTCCATCCCCAATCTAA
Found at i:35481150 original size:159 final size:157
Alignment explanation
Indices: 35480724--35481152 Score: 497
Period size: 158 Copynumber: 2.7 Consensus size: 157
35480714 AGCATGTAAG
* * * *
35480724 GGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGATCAGCTGAGTAG-CCGTACGC
1 GGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTACCTCTTCGATC-GCTGAGT-GCCCGCACGC
* * **
35480788 CCTTTTCATGGGTTAGCTTAGGCATAGGGAGTTCATTCCATGTCGAAGCCCCTGCCGGACCGAGG
64 CCATTTCATGGGTTAGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGG
*
35480853 GTTGTGGCAGCTGGACCTACAACACGCAA
129 GTTGTGGCAGCGGGACCTACAACACGCAA
* * * * * * * *
35480882 GGGGGGTCGGGTCGATCCCTGGCTTGCGCATTCTATCT-TTCTGGTCGGCTGAGCGCCCACCCAC
1 GGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTACCTCTTC-GATC-GCTGAGTGCCCGCACGC
*
35480946 CCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGG
64 CCATTTCATGGGTTAGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGG
*
35481011 GTTGTGGCAGCGGGA-CTGACAGCACGCAGA
129 GTTGTGGCAGCGGGACCT-ACAACACGCA-A
* * * * *
35481041 GGGGGATTGGGTCGATCCCCGGCTTGCGCATTATGCCTCTTCGATCGCCTCAGTGCCCGCACGCT
1 GGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTACCTCTTCGATCG-CTGAGTGCCCGCACGCC
* * * **
35481106 CGTTTCATGGGTTAACTTATGCATATAGAGTTCATTCCCA-GTCTAAG
65 CATTTCATGGGTTAGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAG
35481153 ATTAGACTGG
Statistics
Matches: 225, Mismatches: 39, Indels: 13
0.81 0.14 0.05
Matches are distributed among these distances:
157 5 0.02
158 130 0.58
159 84 0.37
160 6 0.03
ACGTcount: A:0.17, C:0.29, G:0.30, T:0.24
Consensus pattern (157 bp):
GGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTACCTCTTCGATCGCTGAGTGCCCGCACGCCC
ATTTCATGGGTTAGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGT
TGTGGCAGCGGGACCTACAACACGCAA
Found at i:35481447 original size:11 final size:11
Alignment explanation
Indices: 35481412--35481440 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
35481402 ACCATCGCCG
35481412 GAGCATCACCA
1 GAGCATCACCA
35481423 GAGCATCACCA
1 GAGCATCACCA
35481434 GAGCATC
1 GAGCATC
35481441 GTCAGAGAGC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.34, C:0.34, G:0.21, T:0.10
Consensus pattern (11 bp):
GAGCATCACCA
Found at i:35482055 original size:26 final size:26
Alignment explanation
Indices: 35482019--35482071 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
35482009 GTTGACTTAG
35482019 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
**
35482045 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
35482071 G
1 G
35482072 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:35482495 original size:157 final size:155
Alignment explanation
Indices: 35482045--35482564 Score: 517
Period size: 157 Copynumber: 3.3 Consensus size: 155
35482035 CCCAGTCTAA
* * ** *
35482045 GCATACGGAGTTCATTTCCAGTCTAAGATCGGATCGGACCGAGGGTTACGATAGCAGGATCGGCA
1 GCATACGGAGTTCA-TTCCAGTCTAAGATCAGATCGGATCGAGGGTTGTGATAGCA-GATCGACA
* * *
35482110 GCACACAGGGGGGATCGGATCGATCCCCGACTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCC
64 GCACACA-GGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCC
* * * * *
35482175 TGCACGCCCATTTTTTGGGTTGGCTTAG
128 TGCACACTCATTTTGTGGGTTGACTTAT
* *** *
35482203 GCATAGGGAGTTCATTCCATGT-TAACCCCCAG-TCGGATCGAGGGTTGTGGTAGCGAGATC-AG
1 GCATACGGAGTTCATTCCA-GTCTAA-GATCAGATCGGATCGAGGGTTGTGATAGC-AGATCGA-
* * * * * *
35482265 CAGCACACAAAGGGGGACCGGGTCGATCCCCGGCTTGTGCATTATGCCTCTTCGGTCGGCTTAGT
62 CAGCACAC--AGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGC
* *
35482330 GCCCGCACATTCATTTTGTGGGTTGACTTAT
125 GCCTGCACACTCATTTTGTGGGTTGACTTAT
* * *
35482361 GCATACGAAGTTCATTCCTAGTCTAAGATCAGATCGGATCGAGGGTTGTGACAGCAGTATCGATA
1 GCATACGGAGTTCATTCC-AGTCTAAGATCAGATCGGATCGAGGGTTGTGATAGCAG-ATCGACA
** * * * * *
35482426 GCATGCAGGGGGACCGGGCCGATCCCCGGCTTGCACATTCTACCTCCCCGA-CTAGCTGAGCGCC
64 GCACACAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATC-GGCTGAGCGCC
* *
35482490 TGCACACTCGTTTCGTGGGTTGACTTAT
128 TGCACACTCATTTTGTGGGTTGACTTAT
* * * *
35482518 GCATACCGAGTTCATTCCCAGTCTAAGATTAGACCGGATCAAGGGTT
1 GCATACGGAGTTCATT-CCAGTCTAAGATCAGATCGGATCGAGGGTT
35482565 ACGGTAGCAG
Statistics
Matches: 293, Mismatches: 56, Indels: 27
0.78 0.15 0.07
Matches are distributed among these distances:
156 1 0.00
157 146 0.50
158 112 0.38
159 33 0.11
160 1 0.00
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (155 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCAGATCGGATCGAGGGTTGTGATAGCAGATCGACAGC
ACACAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCTGC
ACACTCATTTTGTGGGTTGACTTAT
Found at i:35483215 original size:26 final size:26
Alignment explanation
Indices: 35483179--35483257 Score: 158
Period size: 26 Copynumber: 3.0 Consensus size: 26
35483169 GTTGGCTTAG
35483179 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
35483205 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
35483231 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
35483257 G
1 G
35483258 ATCGTACCGG
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 53 1.00
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:35483961 original size:380 final size:378
Alignment explanation
Indices: 35483205--35484216 Score: 1081
Period size: 380 Copynumber: 2.7 Consensus size: 378
35483195 CCATGTCTAA
* * *
35483205 GCATACGGAGTTCAT-TCCATGTCTAAGCATACGGAGTTCATT-CCATGTCTAAGATCGTACCGG
1 GCATACGGAGTTCATCTCCAT-TCTAAGCATACGAAGTTCATTCCCA-GTCTAAGATCGGATCGG
* * * * *
35483268 ACTGAAGGTTGTGGTAGTAAGACCAGTAGTAGGATCGACAGCACGCAAGAGGGGATCGGGCCAAT
64 ACTGAGGGTTGTGGTAGTAGGACCAGCAGTAGGATCGACAGCACG-AAGAGTGGACCGGGCCAAT
* * * * * ** *
35483333 CCTCGACTTGTGAATTTTGCCTCTTCGGTCGACTGAGCGACCGCATGCTTGTTTCATGGGTTGGT
128 CCTAG-CTTGTGCATTCTGCCTCTCCGGTCGACTGAGCG-CCGCACGCCCGTTTCATGGGTTGGC
* * * *
35483398 TTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAGTCGGACCAAGGGTTGTGGCAGCAAGACC
191 TTAGGCATAAGGAGTTCATTCTATGTCTAAGCCCCAGCCGGACCAAGGGTTGTGGCAGCAAGACC
* ** *** *
35483463 GGCAGCGGGATCGACACTACGTAGAGGGGGACCGGACTGATCCTTGACTTGTGTATTATGCCTCT
256 AGCAGCGGGATCGACACTACGTAGAGGGGGACCGGACTGATCCCCGACTTGCACATTATGCCACT
* * * * * * * * *
35483528 CTGGATGGCCTCTCCGGTCGACTGACTACCCATATGCTCGTTTCATTGGTTGACTTAG
321 CTGAACGGCCTATCCAGTCGACTAACTACCCACACGCTCATTTCATGGGTTGACTTAG
* * * *
35483586 GCATATGGAGTTCATCCCCATTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGATTGGAG
1 GCATACGGAGTTCATCTCCATTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGATCGGAC
* * * * *
35483651 TGAGGGTTGTGGCAGTAGGACCAGCAGTAGGATCGGCAGCACGTAGCGTGGACCGAGCCAATCCT
66 TGAGGGTTGTGGTAGTAGGACCAGCAGTAGGATCGACAGCACGAAGAGTGGACCGGGCCAATCC-
** * * * **
35483716 TAGCTTACGCATTCTGCTTCTCCGGTC-AGCTGAGTGCCTGCACGCCCGTTTCGTGAATTGGCTT
130 TAGCTTGTGCATTCTGCCTCTCCGGTCGA-CTGAGCGCC-GCACGCCCGTTTCATGGGTTGGCTT
* * * * *
35483780 AGGCATAAGGAGTTCATTCTATGTCTAAGTCCCAACCGGACCGAGGGTTGTGGTAGCAGGACCAG
193 AGGCATAAGGAGTTCATTCTATGTCTAAGCCCCAGCCGGACCAAGGGTTGTGGCAGCAAGACCAG
* *
35483845 CAGTGGGATCGACAGC-ACGTAGAGGGGGA-CGGAGCTGATCCCCGGCTTGCACATTATGCCACT
258 CAGCGGGATCGACA-CTACGTAGAGGGGGACCGGA-CTGATCCCCGACTTGCACATTATGCCACT
* * *
35483908 -TCGAACGTCCTATTCAGTC-AGCTAAGC-GCCCACACGCTCATTTCATGGGTTGACTTAG
321 CT-GAACGGCCTATCCAGTCGA-CTAA-CTACCCACACGCTCATTTCATGGGTTGACTTAG
* * *
35483966 GCATACGGAGTTCATCTGCAGTCTAAGCATAC-AGAGTTCATTCCCAGTCTAAGATCGGATCAGA
1 GCATACGGAGTTCATCTCCATTCTAAGCATACGA-AGTTCATTCCCAGTCTAAGATCGGATCGGA
* * ** * * * * *
35484030 CTGAGGGTTGCGATAGTAGGACCAGCAACAGGATTGACAGCATGCAGGGTGGACCGGGCCGATCC
65 CTGAGGGTTGTGGTAGTAGGACCAGCAGTAGGATCGACAGCACGAAGAGTGGACCGGGCCAAT-C
** * *
35484095 CCGGCTTGTGCATTCTGCCTCTCCAGTCGACTGAGCGCCCGCACGCCCATTTCATGGGTTGGCTT
129 CTAGCTTGTGCATTCTGCCTCTCCGGTCGACTGAGCG-CCGCACGCCCGTTTCATGGGTTGGCTT
* *
35484160 AGGCATAAGGAGTTCATT-TCATGTCTAAGGCCCAGCCAGACCAAGGGTTGTGGCAGC
193 AGGCATAAGGAGTTCATTCT-ATGTCTAAGCCCCAGCCGGACCAAGGGTTGTGGCAGC
35484217 GAAACTGACA
Statistics
Matches: 519, Mismatches: 97, Indels: 31
0.80 0.15 0.05
Matches are distributed among these distances:
379 11 0.02
380 405 0.78
381 96 0.18
382 7 0.01
ACGTcount: A:0.22, C:0.25, G:0.28, T:0.25
Consensus pattern (378 bp):
GCATACGGAGTTCATCTCCATTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGATCGGAC
TGAGGGTTGTGGTAGTAGGACCAGCAGTAGGATCGACAGCACGAAGAGTGGACCGGGCCAATCCT
AGCTTGTGCATTCTGCCTCTCCGGTCGACTGAGCGCCGCACGCCCGTTTCATGGGTTGGCTTAGG
CATAAGGAGTTCATTCTATGTCTAAGCCCCAGCCGGACCAAGGGTTGTGGCAGCAAGACCAGCAG
CGGGATCGACACTACGTAGAGGGGGACCGGACTGATCCCCGACTTGCACATTATGCCACTCTGAA
CGGCCTATCCAGTCGACTAACTACCCACACGCTCATTTCATGGGTTGACTTAG
Found at i:35484013 original size:26 final size:26
Alignment explanation
Indices: 35483966--35484018 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
35483956 GTTGACTTAG
* *
35483966 GCATACGGAGTTCATCTGCAGTCTAA
1 GCATACAGAGTTCATCTCCAGTCTAA
35483992 GCATACAGAGTTCAT-TCCCAGTCTAA
1 GCATACAGAGTTCATCT-CCAGTCTAA
35484018 G
1 G
35484019 ATCGGATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCTCCAGTCTAA
Found at i:35485238 original size:158 final size:158
Alignment explanation
Indices: 35484892--35485258 Score: 366
Period size: 158 Copynumber: 2.3 Consensus size: 158
35484882 AAGCATGCAT
* * *
35484892 AGTTCATTCCCAGTCTAAGATCGGACCGGA-TCGAGGGTTGTGACAGCAGGATCGACAGCACGCA
1 AGTTCATTCCCAGTCTAAGATCAGACCGGACT-GAGGGTTGTGGCAGCAGGATAGACAGCACGCA
* * * * * *
35484956 GGGGGGACCAGGCTGATCCTCGGCTTGCTCATTCTGCCTCTTCGATCGACTGAACGCCCGCACAT
65 GGGGGGACCAGGCTGATCCCCGGCTTGCTCATTATGCCTCTCCGACCGACTCAACGCCCACACAT
* * * * *
35485021 CCGTTTTGTGGGTTGGCTTAGGCATAGGG
130 CCATTTCGTAGGTTGACTTAGGCATACGG
* * ** * * * *
35485050 AGGTCATT-CCATGCCTAAGCCGCAG-CCGGACTGAGGGTTATGGCAGCGGGATAGGCAGCACGT
1 AGTTCATTCCCA-GTCTAAG-ATCAGACCGGACTGAGGGTTGTGGCAGCAGGATAGACAGCACGC
* * ** **
35485113 AGAGGGGGACCAAG-TCGATCCCCGGCTTGC-GATTATGCCTCTCCGACCGGTTCAGTGCCCACA
64 AG-GGGGGACCAGGCT-GATCCCCGGCTTGCTCATTATGCCTCTCCGACCGACTCAACGCCCACA
* *
35485176 CTTTCATTTCGTAGGTTGACTTAGGCATACGG
127 CATCCATTTCGTAGGTTGACTTAGGCATACGG
* *
35485208 AGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGTGGCAGCAGGA
1 AGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGGCAGCAGGA
35485259 CCAACAGCAG
Statistics
Matches: 164, Mismatches: 38, Indels: 14
0.76 0.18 0.06
Matches are distributed among these distances:
157 6 0.04
158 129 0.79
159 29 0.18
ACGTcount: A:0.20, C:0.26, G:0.31, T:0.23
Consensus pattern (158 bp):
AGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGGCAGCAGGATAGACAGCACGCAG
GGGGGACCAGGCTGATCCCCGGCTTGCTCATTATGCCTCTCCGACCGACTCAACGCCCACACATC
CATTTCGTAGGTTGACTTAGGCATACGG
Found at i:35485420 original size:26 final size:26
Alignment explanation
Indices: 35485384--35485436 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
35485374 GTTGACTTTG
35485384 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
*
35485410 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
35485436 G
1 G
35485437 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGTCTAA
Found at i:35486330 original size:26 final size:26
Alignment explanation
Indices: 35486301--35486353 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
35486291 GTTGACTTAG
*
35486301 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* *
35486327 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
35486353 G
1 G
35486354 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:35486852 original size:26 final size:26
Alignment explanation
Indices: 35486802--35486854 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
35486792 GTTGGCTTAG
*
35486802 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
*
35486828 GCATATGGAGTTCATTCC-TAATCTAA
1 GCATACGGAGTTCATTCCAT-ATCTAA
35486854 G
1 G
35486855 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:35487051 original size:197 final size:196
Alignment explanation
Indices: 35486746--35487222 Score: 634
Period size: 197 Copynumber: 2.4 Consensus size: 196
35486736 TAGCTTGTGT
* ** * **
35486746 ATTCTACCTCTCCGGCCAGTTGAGCGTTCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGA
1 ATTCTACCACTCTAGCCGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGA
* * * *
35486811 GTTCATTCCATGTCTAAGCATATGGAGTTCATTCCTAATCTAAGATCGGACCGGATCGAGGGTTG
66 GTTCATTCCATGTCTAAGCATATAGAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTG
* ** *
35486876 CGGTAGCAGGACCAGCAGCAGGATCAACAACATGCAGGGGGGGACC-GAGGCCATCCCTGACTTG
131 CGGCAGCAGGACCAGCAGCAGGATCAACAACACACA-GGGGGGACCAG-GGCCATCCCCGACTTG
*
35486940 CGC
194 CAC
** * * *
35486943 ATTCTACCACTGC-AGTTGGTTGAGTGCCCGCACGCTCGTGTCGTGGGTTGGCTTAGGCATACGG
1 ATTCTACCACT-CTAGCCGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGG
35487007 AGTTCATTCCATGTCTAAGCATATAGAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTT
65 AGTTCATTCCATGTCTAAGCATATAGAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTT
** * * * * *
35487072 TTGGCAGTAGGACCAGCAGCAGGATCGATAGCACACAGGGGGGACCAGGGCCATCCCCGGCTTGC
130 GCGGCAGCAGGACCAGCAGCAGGATCAACAACACACAGGGGGGACCAGGGCCATCCCCGACTTGC
35487137 AC
195 AC
* * * *
35487139 ATTCTGCCTCTCTGGCCGGTTGAGCGCCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGA
1 ATTCTACCACTCTAGCCGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGA
35487204 GTTCATTCCATGTCTAAGC
66 GTTCATTCCATGTCTAAGC
35487223 CCCAGCCAAA
Statistics
Matches: 242, Mismatches: 35, Indels: 7
0.85 0.12 0.02
Matches are distributed among these distances:
195 1 0.00
196 98 0.40
197 142 0.59
198 1 0.00
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (196 bp):
ATTCTACCACTCTAGCCGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGA
GTTCATTCCATGTCTAAGCATATAGAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTG
CGGCAGCAGGACCAGCAGCAGGATCAACAACACACAGGGGGGACCAGGGCCATCCCCGACTTGCA
C
Found at i:35487766 original size:159 final size:158
Alignment explanation
Indices: 35487468--35487906 Score: 365
Period size: 159 Copynumber: 2.8 Consensus size: 158
35487458 CAGGATCGGT
* * * * * * * *
35487468 AGCACGCAGGGGGGACGGAGCTGATCCTTGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGC
1 AGCACACAGGGGGGACGGAGCTAATCCTCGACTTACGCATTATGCCTCTCCGATCGGCTCAGCGC
* * * *
35487533 CCGCACGCCTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCG
66 CCGCACGCCTGTTTCATGGGTTGACTTAGGCATAAGGAGTTCATTCCATGTCTAAGACCTAGCCA
*
35487598 GACTGAGGGTTGTGGCAGTGGGACCGAC
131 GACCGAGGGTTGTGGCAGTGGGACCGAC
* *
35487626 AGCACACAGAGGGGGATCGG-GCTAATCCTCGACTTACGCATTATGCCTCTTCGATCGGCTCAGT
1 AGCACACAG-GGGGGA-CGGAGCTAATCCTCGACTTACGCATTATGCCTCTCCGATCGGCTCAGC
* *
35487690 GCCCGCACG-CTCGTTTCATGGGTTGACTTATGCATACAGG-GTTCATTCC-TAGTCTAAGATC-
64 GCCCGCACGCCT-GTTTCATGGGTTGACTTAGGCATA-AGGAGTTCATTCCAT-GTCTAAGACCT
* ** * *
35487751 AGATCAGACCGAGGGTTGTGGCAGCAGGATCGAT
126 AG-CCAGACCGAGGGTTGTGGCAGTGGGACCGAC
** * * * * * * ** * *
35487785 AGCACATTGGGGGGAACCGG-G-TCGATCCCCGGCTTACACATTCTAG-CTCTACGGCCGGTTGA
1 AGCACACAGGGGGG-A-CGGAGCT-AATCCTCGACTTACGCATTAT-GCCTCTCCGATCGGCTCA
* * * * *
35487847 GCGCCCACACG-CTCGTTTCGTGGCTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAG
62 GCGCCCGCACGCCT-GTTTCATGGGTTGACTTAGGCATAAGGAGTTCATTCCATGTCTAAG
35487907 CATACGGAGT
Statistics
Matches: 228, Mismatches: 42, Indels: 21
0.78 0.14 0.07
Matches are distributed among these distances:
158 21 0.09
159 200 0.88
160 7 0.03
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.24
Consensus pattern (158 bp):
AGCACACAGGGGGGACGGAGCTAATCCTCGACTTACGCATTATGCCTCTCCGATCGGCTCAGCGC
CCGCACGCCTGTTTCATGGGTTGACTTAGGCATAAGGAGTTCATTCCATGTCTAAGACCTAGCCA
GACCGAGGGTTGTGGCAGTGGGACCGAC
Found at i:35487916 original size:26 final size:26
Alignment explanation
Indices: 35487880--35487932 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35487870 CTTGGCTTAG
*
35487880 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
35487906 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
35487932 G
1 G
35487933 ATTTTGATCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:35488638 original size:26 final size:26
Alignment explanation
Indices: 35488602--35488654 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
35488592 GTTGACTTAG
35488602 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
35488628 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
35488654 G
1 G
35488655 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:35489011 original size:159 final size:157
Alignment explanation
Indices: 35488628--35489026 Score: 388
Period size: 159 Copynumber: 2.5 Consensus size: 157
35488618 CCCAGTCTAA
* * ** * * *
35488628 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGATTGAGGGTTACGACAGCAGGATCGGCA
1 GCATA-GGAGTTCATTCACAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCAGGATCGACA
* * * * ** *
35488693 GCACGCAGGGGGGACCGGACAGATCCTTGGCTTGCGTATTCTGCCTCTCCGGCCGGCTGAGCACC
65 GCACGCAGGGGGGACCGGACAGATCCCTGACTTACGCATGATGCCTCTCCGGCCGGCTCAGCACC
*
35488758 CGCACGCCCATTTCATGGGTTGGCTTAG
130 CGCACGCCCATTTCATGGGTTGACTTAG
* ** *** * * * *
35488786 GCATAGCGAGTTCATTTCA-TGTCTAAGCCCCAG-CCAAACCGAGGGTTGTGGCAGCGGGACCAA
1 GCATAG-GAGTTCA-TTCACAGTCTAAG-ATCAGACTGGACCGAGGGTTGCGGCAGCAGGATCGA
* * * * * * * *
35488849 CAGCATGCAGAGGGGGACCGGGCTGATCCCTGACTTACGCATGATGCTTTTTCGGCCGGTTCAGT
63 CAGCACGCAG-GGGGGACCGGACAGATCCCTGACTTACGCATGATGCCTCTCCGGCCGGCTCAGC
* * *
35488914 GCCCGTACGCTCATTTCATGGGTTGACTTAG
127 ACCCGCACGCCCATTTCATGGGTTGACTTAG
* *
35488945 GCATATGGAGTTCATTCACAGTCTAAGATCAGACTGGACCGAGGGTTGCGGTAACAGGATCGACA
1 GCATA-GGAGTTCATTCACAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCAGGATCGACA
35489010 GCACGCAGGGGGGACCG
65 GCACGCAGGGGGGACCG
35489027 AGTCGATCCC
Statistics
Matches: 185, Mismatches: 49, Indels: 14
0.75 0.20 0.06
Matches are distributed among these distances:
157 1 0.01
158 62 0.34
159 121 0.65
160 1 0.01
ACGTcount: A:0.21, C:0.26, G:0.31, T:0.22
Consensus pattern (157 bp):
GCATAGGAGTTCATTCACAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCAGGATCGACAG
CACGCAGGGGGGACCGGACAGATCCCTGACTTACGCATGATGCCTCTCCGGCCGGCTCAGCACCC
GCACGCCCATTTCATGGGTTGACTTAG
Found at i:35489493 original size:26 final size:26
Alignment explanation
Indices: 35489457--35489509 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
35489447 GTTGACTTAG
35489457 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
35489483 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
35489509 G
1 G
35489510 ATTAGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:35489776 original size:159 final size:159
Alignment explanation
Indices: 35489480--35489987 Score: 515
Period size: 159 Copynumber: 3.2 Consensus size: 159
35489470 ATCCCCAGTC
* ** * ** **
35489480 TAAGCATATGGAGTTCATTCCCA-GTCTAAG-ATTAGATCAGACCGAGGGTTGCGACAGCAGGTT
1 TAAGCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCAGACCGAGGGTTGCGGTAGCAGGAC
* * * * *
35489543 TGACAGCACACAGGGGGGACCGGGTCGATCCCC-GACTTGCGCATTCTGCCTCTCCAGCCGACTG
65 TGACAGCTCACAGGGGGGATCGAGTCGATCCCCAG-CTTACGCATTCTGCCTCTCCGGCCGACTG
* *
35489607 AGCGCCCGCACGCCCATTTCATGGGTTGGCT
129 AGCGCCCGCACGCTCGTTTCATGGGTTGGCT
* * * * *
35489638 TAAGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCAGACCGAGGGTTGTGGTGGCGGGACT
1 TAAGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCGAGGGTTGCGGTAGCAGGACT
* * * * *
35489702 GGCAGCTCACAGAGGGGGATCGAGTCGATCCCCAGCTTATGCATTTTGCCTCTTCGGCCGACTCA
66 GACAGCTCACAG-GGGGGATCGAGTCGATCCCCAGCTTACGCATTCTGCCTCTCCGGCCGACTGA
* * *
35489767 GCGCCCGCACGCTCGTTTCGTAGGTTGACT
130 GCGCCCGCACGCTCGTTTCATGGGTTGGCT
* * * * *
35489797 TATGCATACGGAGTTCATTCCAAGTCTAAG-ATCAGACCAGACCGAGGGTTGCGGTAGTAGGATT
1 TAAGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCGAGGGTTGCGGTAGCAGGACT
* * * * * * *
35489861 GACAGCTCATAGTGGGGGATTGAG-CTGATCCCAAACTTACACATTCTACCTCTCCGGCCGGCTG
66 GACAGCTCACAG-GGGGGATCGAGTC-GATCCCCAGCTTACGCATTCTGCCTCTCCGGCCGACTG
* * *
35489925 AGCGCCTGCACGTTCGTTTCATGGGTTAGCT
129 AGCGCCCGCACGCTCGTTTCATGGGTTGGCT
* * *
35489956 TAGGCATATGGAGTTCGTTCCATGTCTAAGCA
1 TAAGCATACGGAGTTCATTCCATGTCTAAGCA
35489988 TATGGAGTTC
Statistics
Matches: 283, Mismatches: 60, Indels: 12
0.80 0.17 0.03
Matches are distributed among these distances:
157 3 0.01
158 59 0.21
159 219 0.77
160 2 0.01
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (159 bp):
TAAGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCGAGGGTTGCGGTAGCAGGACT
GACAGCTCACAGGGGGGATCGAGTCGATCCCCAGCTTACGCATTCTGCCTCTCCGGCCGACTGAG
CGCCCGCACGCTCGTTTCATGGGTTGGCT
Found at i:35489995 original size:26 final size:26
Alignment explanation
Indices: 35489959--35490011 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35489949 GTTAGCTTAG
*
35489959 GCATATGGAGTTCGTT-CCATGTCTAA
1 GCATATGGAGTTCATTCCCA-GTCTAA
35489985 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
35490011 G
1 G
35490012 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.32
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:35491025 original size:158 final size:159
Alignment explanation
Indices: 35490626--35491029 Score: 402
Period size: 159 Copynumber: 2.5 Consensus size: 159
35490616 CTCGGCTTAT
* * * * * *
35490626 GCATTCTGCCTCTCCGATTGGCTGAGCGCCCGCATGCCCGCTTCATGGGTTGGCTTAGGGATAGG
1 GCATTCTACCTCTCCGATCGGCTGAGCGCCCGCATGCTCGTTTCATGGGTTGGCTTAGGCATACG
* ** ** * *
35490691 GAGTTCATTCCATGTCTAAGCCCCAATCGGATCGAGGGTTGTGGTAGCGGGATCGACAGCACACA
66 GAGTTCATTCCATGTCTAAGCACCAATCAAAGAGAGGGTTGTGGCAGCAGGATCGACAGCACACA
* ** *
35490756 GAGGAGGGCCGAGCTGATCCTCAGCTTGC
131 GAGGAGGACCGAGCCAATCCCCAGCTTGC
* * * * * ** * * *
35490785 GCATTATAACTTCTCAG-TCGGCTCAACGCCCGCATGCTCGTTTTGTGTGTTGACTTACGCATAC
1 GCATTCT-ACCTCTCCGATCGGCTGAGCGCCCGCATGCTCGTTTCATGGGTTGGCTTAGGCATAC
* *
35490849 GAAGTTCATTCC-TAGTCTAAG-ATCAGATCAAAGAGAGGGTTGTGGCAGCAGGATCGACAGCAC
65 GGAGTTCATTCCAT-GTCTAAGCACCA-ATCAAAGAGAGGGTTGTGGCAGCAGGATCGACAGCAC
** * *
35490912 GTAGTGG-GGATCGAGCCAATCCCCAGCTTGC
128 ACAGAGGAGGACCGAGCCAATCCCCAGCTTGC
* * * **
35490943 GCATTCTACCTCTCCGACCGGTTGAGCGCCCGCACGCTTATTTCATGGGTTGGCTTAGGCATACG
1 GCATTCTACCTCTCCGATCGGCTGAGCGCCCGCATGCTCGTTTCATGGGTTGGCTTAGGCATACG
*
35491008 GAGTTTATTCCATGTCTAAGCA
66 GAGTTCATTCCATGTCTAAGCA
35491030 TACGGAGTTC
Statistics
Matches: 189, Mismatches: 50, Indels: 12
0.75 0.20 0.05
Matches are distributed among these distances:
157 7 0.04
158 80 0.42
159 96 0.51
160 6 0.03
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.25
Consensus pattern (159 bp):
GCATTCTACCTCTCCGATCGGCTGAGCGCCCGCATGCTCGTTTCATGGGTTGGCTTAGGCATACG
GAGTTCATTCCATGTCTAAGCACCAATCAAAGAGAGGGTTGTGGCAGCAGGATCGACAGCACACA
GAGGAGGACCGAGCCAATCCCCAGCTTGC
Found at i:35491051 original size:26 final size:26
Alignment explanation
Indices: 35491001--35491053 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
35490991 GTTGGCTTAG
* *
35491001 GCATACGGAGTTTATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
35491027 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
35491053 G
1 G
35491054 ATTGAACCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:35491397 original size:26 final size:26
Alignment explanation
Indices: 35491367--35491419 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35491357 GTTGACTTAG
*
35491367 GCATATGGAGTTCA-TCTCCAGTCTAA
1 GCATACGGAGTTCATTC-CCAGTCTAA
35491393 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
35491419 G
1 G
35491420 ATCGCACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:35491440 original size:366 final size:353
Alignment explanation
Indices: 35490937--35491608 Score: 835
Period size: 366 Copynumber: 1.9 Consensus size: 353
35490927 CCAATCCCCA
* * * * *
35490937 GCTTGCGCATTCTACCTCTCCGACCGGTTGAGCGCCCGCACGCTTATTTCATGGGTTGGCTTAGG
1 GCTTGCGCATTATACCTCTCCGACCGGCTGAGCGCCCGCACGATCATTTCATGGGTTGACTTAGG
* * *
35491002 CATACGGAGTTTATTCCATGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATTGAACCGATCA
66 CATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGAACCGACCA
* * *
35491067 GAGGGTTGCGGTAGCAGGACCAATAGCAGGATCGACAACACGCAGGGGGGACGGGTCGATCCTCG
131 GAGGGTTGC-G--GCA-G-----T---AGGATCGACAACACGCAGGGGGCACGGGCCAATCCTCG
* * * * * * * *
35491132 ACTTGCGCATTCTGCCTCTTCGGCTGGCTGAGCGCCTGTACGCTCATTTCATGGGTTAGCTTAGG
184 ACTTGCGCATTCTGCCTCTAC-GATCGCTCAGAGCCCGCACGCTCATTTCATGGGTGAGCTTAGG
* * * *
35491197 CATACGGAGTTCATTCCATGCCTAAGCCCCAGCCGGATCGAGGGTTGTGGCAGCCGGACCGGCAG
248 CATACGGACTTCATTCCATGCCTAAGCCCCAGCCGGACCAAGGGTTGTGGCAGCAGGACCGGCAG
35491262 TGGGATCGACAGCACGCAGAGGGGGACCGGGCTGATTCGTG
313 TGGGATCGACAGCACGCAGAGGGGGACCGGGCTGATTCGTG
* * *
35491303 GCTTGCGCATTATGCCTCTCCGGCCGGCTGAGCGCCCGCACGATCGTTTCATGGGTTGACTTAGG
1 GCTTGCGCATTATACCTCTCCGACCGGCTGAGCGCCCGCACGATCATTTCATGGGTTGACTTAGG
* * * *
35491368 CATATGGAGTTCATCTCCA-GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGCACTGGAC
66 CATACGGAGTTCAT-TCCATGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGAAC-CGAC
* * * *
35491432 CA-AGGGTTGCGGCAGTAGGTTCGACAGCACGCAGGGGGCTCGGGCCAATCCTCGGCTTGCGCAT
129 CAGAGGGTTGCGGCAGTAGGATCGACAACACGCAGGGGGCACGGGCCAATCCTCGACTTGCGCAT
* * * *
35491496 TTTGCCTCTACGATCGCTCAGAGCCCGCACGCTCATTTCATGGGTGGGCTTAGGCATAGGGTCTT
194 TCTGCCTCTACGATCGCTCAGAGCCCGCACGCTCATTTCATGGGTGAGCTTAGGCATACGGACTT
* *
35491561 CATTCCATGTCTAAGCCCCAGCTGGACCAAGGGTTGTGGCAGCAGGAC
259 CATTCCATGCCTAAGCCCCAGCCGGACCAAGGGTTGTGGCAGCAGGAC
35491609 TGGTAGCATG
Statistics
Matches: 264, Mismatches: 40, Indels: 17
0.82 0.12 0.05
Matches are distributed among these distances:
353 86 0.33
354 50 0.19
357 1 0.00
362 1 0.00
363 3 0.01
365 1 0.00
366 114 0.43
367 8 0.03
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.23
Consensus pattern (353 bp):
GCTTGCGCATTATACCTCTCCGACCGGCTGAGCGCCCGCACGATCATTTCATGGGTTGACTTAGG
CATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGAACCGACCA
GAGGGTTGCGGCAGTAGGATCGACAACACGCAGGGGGCACGGGCCAATCCTCGACTTGCGCATTC
TGCCTCTACGATCGCTCAGAGCCCGCACGCTCATTTCATGGGTGAGCTTAGGCATACGGACTTCA
TTCCATGCCTAAGCCCCAGCCGGACCAAGGGTTGTGGCAGCAGGACCGGCAGTGGGATCGACAGC
ACGCAGAGGGGGACCGGGCTGATTCGTG
Found at i:35491896 original size:26 final size:26
Alignment explanation
Indices: 35491866--35491918 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
35491856 GTTGGCTTAG
35491866 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
35491892 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
35491918 G
1 G
35491919 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:35492644 original size:26 final size:26
Alignment explanation
Indices: 35492599--35492651 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
35492589 GTTGACTTAG
*
35492599 GCATACGGAGTTCAACCCCATTCTAA
1 GCATACGGAGTTCAACCCCAGTCTAA
* **
35492625 GCATACGTAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCAACCCCAGTCTAA
35492651 G
1 G
35492652 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCAACCCCAGTCTAA
Found at i:35493252 original size:343 final size:342
Alignment explanation
Indices: 35492547--35493305 Score: 921
Period size: 342 Copynumber: 2.2 Consensus size: 342
35492537 TTACGCATCC
*
35492547 TGCCTC-TCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
1 TGCCTCTTC-GGTCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
* * * * * ** * *
35492611 CAACCCCATTCTAAGCATACGTAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGTGA
65 CATCCCCAGTCTAAGCACACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTGCGA
* ** * * * * * *
35492676 TAGCAGAATCGGCAGCACGTAGGGGGGATCGGGTCGGTCCCCGGCTTATGCATTATGCCTCTCTG
130 CAGCAGAATCCACAGCACGTAAGGGGGATCAGGCCGATCCCCGGCTTACGCATTATGCCTCTCCG
* * * * * *
35492741 ATCGACTGAGTGCCCGCAGCTAGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCTTTCCATGTCT
195 ACCGACTGAGCGCCCACAGCTAGTTTCATGGGTTGGCTTAGGCATAGGAAGGTCATTCCATGTCT
** ** * * *
35492806 AAGCCCCAACCGGACTGAGAGTTTTGGCAGTGGGATCGATAGCATGTAGAGAGGGATCGGGCCAA
260 AAGCCCCAACCAAACTGAGAGTTTTGGCAGCAGGACCGACAGCATGCAGAGAGGGATCGGGCCAA
35492871 TCCTCGGCTTGCACATTA
325 TCCTCGGCTTGCACATTA
* * * *
35492889 TGCCTCTTCGATCGGCTCAGCACCCACACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTC
1 TGCCTCTTCGGTCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
* * * *
35492954 ATCCCCAGTCTAAGCACATGGAGTTCATTCCCAGTCTAAGATCAGATCAAACCGCGGGTTGCGGC
66 ATCCCCAGTCTAAGCACACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTGCGAC
* * * * * *
35493019 AGTAGGATCCACAGCATGTAAGGGGGATCAGGCCGATCCCCTGCTTGCGCATTCTGCCTCTCCGA
131 AGCAGAATCCACAGCACGTAAGGGGGATCAGGCCGATCCCCGGCTTACGCATTATGCCTCTCCGA
* * *
35493084 CCGATTGAGCGCCCACACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGAAGGTCATTCCATGTCT
196 CCGACTGAGCGCCCACA-GCTAGTTTCATGGGTTGGCTTAGGCATAGGAAGGTCATTCCATGTCT
** *
35493149 AAGCCCCAGTCAAACTGAG-GTTTGTGGCAGCAGGACCGACAGCATGCAGAGGGGGATCGGGCCA
260 AAGCCCCAACCAAACTGAGAGTTT-TGGCAGCAGGACCGACAGCATGCAGAGAGGGATCGGGCCA
*
35493213 ATCCTCGGCTTGCTCATTA
324 ATCCTCGGCTTGCACATTA
* * * * * * *
35493232 TGCCTCTTCGGTCAGCTCAGCGCCTGTACACTCGTTTCAT-GGTTGACTTATGCATACAGAGTTC
1 TGCCTCTTCGGTCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
*
35493296 ATTCCCAGTC
66 ATCCCCAGTC
35493306 GAAGATCAAA
Statistics
Matches: 349, Mismatches: 65, Indels: 6
0.83 0.15 0.01
Matches are distributed among these distances:
342 207 0.59
343 142 0.41
ACGTcount: A:0.20, C:0.27, G:0.28, T:0.25
Consensus pattern (342 bp):
TGCCTCTTCGGTCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
ATCCCCAGTCTAAGCACACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTGCGAC
AGCAGAATCCACAGCACGTAAGGGGGATCAGGCCGATCCCCGGCTTACGCATTATGCCTCTCCGA
CCGACTGAGCGCCCACAGCTAGTTTCATGGGTTGGCTTAGGCATAGGAAGGTCATTCCATGTCTA
AGCCCCAACCAAACTGAGAGTTTTGGCAGCAGGACCGACAGCATGCAGAGAGGGATCGGGCCAAT
CCTCGGCTTGCACATTA
Done.