Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 392 of 402
Found at i:35493490 original size:26 final size:26
Alignment explanation
Indices: 35493440--35493492 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
35493430 GTTAGCTTAG
* *
35493440 GCATACGGAGTTTATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
35493466 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
35493492 G
1 G
35493493 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:35494210 original size:26 final size:26
Alignment explanation
Indices: 35494174--35494226 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
35494164 GTTGACTTAG
*
35494174 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
35494200 GCATACAGAGTTCATTCCCAGTGTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
35494226 G
1 G
35494227 ATCGGACAGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:35495381 original size:26 final size:26
Alignment explanation
Indices: 35495345--35495397 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
35495335 GTTGGCTTAG
35495345 GCATACGGAGTTCATT-CTATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
35495371 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
35495397 G
1 G
35495398 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:35495678 original size:26 final size:26
Alignment explanation
Indices: 35495629--35495681 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
35495619 GTTGGCTTAG
* * **
35495629 GCATACGGAGTTCATTCCGTGTCTAA
1 GCATACGAAGTTCATACCCAGTCTAA
35495655 GCATACGAAGTTCATACCCAGTCTAA
1 GCATACGAAGTTCATACCCAGTCTAA
35495681 G
1 G
35495682 ATTTTGAGCC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATACCCAGTCTAA
Found at i:35496654 original size:26 final size:26
Alignment explanation
Indices: 35496618--35496669 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
35496608 TTGGCATAAA
* **
35496618 CATATGGAGTTCATTCCTTGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
*
35496644 CATACGGAGTTCGTTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
35496670 ATCGGACCCA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.23, C:0.23, G:0.21, T:0.33
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAG
Found at i:35497027 original size:26 final size:26
Alignment explanation
Indices: 35496998--35497048 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
35496988 TTGACTTAGG
*
35496998 CATATAGAGTTCATCCCCAGTCTAAT
1 CATACAGAGTTCATCCCCAGTCTAAT
*
35497024 CATACAGAGTTCATTCCCAGTCTAA
1 CATACAGAGTTCATCCCCAGTCTAA
35497049 GATCAGATCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.27, G:0.12, T:0.29
Consensus pattern (26 bp):
CATACAGAGTTCATCCCCAGTCTAAT
Found at i:35497402 original size:26 final size:26
Alignment explanation
Indices: 35497365--35497417 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
35497355 GTTGACTTAG
*
35497365 GCATACGGAGTTCA-ACCCTAGTCTAA
1 GCATACGAAGTTCATACCC-AGTCTAA
*
35497391 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATACCCAGTCTAA
35497417 G
1 G
35497418 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATACCCAGTCTAA
Found at i:35497596 original size:368 final size:369
Alignment explanation
Indices: 35496776--35497609 Score: 883
Period size: 368 Copynumber: 2.3 Consensus size: 369
35496766 TTCCAATTGA
* * * *
35496776 CTGAGCACCCGCACGCTCATTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
1 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTTATTCCATGTCTAAGC
* * * * * *
35496841 CCCAGCCGGATCGAGGGTTGTGGTAGCAAGA-CTGGCAGCGAGATTGGCAGCACGTAGAGGGGGA
66 CCCAGCTGGATCGAGGGTTGTGGTAGCAGGACCTGACAACGAGATTGACAGCACGCAGAGGGGGA
* * * * * * * *
35496905 CTGGGCTGATCCCCTACTGGCGTATTGTGCCTCTCTGACTGACCTCTCCGGTAGACTGAGCACCT
131 CTGAGCTGATACCCTACTGGCGCATTATGCCTCTCCGACTGACCTCTCCAGCAGACTGAGCACCC
* * * * *
35496970 GCATGCTCGTTCCATGGGTTGACTTAGGCATATAGAGTTCATCCCCAGTCTAATCATACAGAGTT
196 GCACGCTCATTCCATGGGTTGACTTAGGCATACAGAGTTCAACCCCAGTCTAAGCATACAGAGTT
* * * *
35497035 CATTCCCAGTCTAAGATCAGATCAAACCAAGGGGTGTAGTAACAGGATCGATAGCACGCAGGGGG
261 CATTCCCAGTCTAAGATCAGACCAAACCAAGGGGTGTAGCAACAAGATCGACAGCACGCAGGGGG
* * * ** * *
35497100 GATCGGGTCGATCATCGGCTTGTGCATTTTGCCACTCCAACATG
326 GATCGGGCCAATCACCGGCTTGCACATTCTGCCACTCCAACAGG
* * * * *
35497144 TTGAGCGCCCGCACGCTCGTTTTGTCGGTTGGCCTAGGCATACAGAGTTTATTCCATGTCTAAGC
1 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTTATTCCATGTCTAAGC
* * * * * *
35497209 CCCAG-TCGGACCAAGGGTTGTGGCAGCAGGACCT-ACAACGGGATTGACAGCACGCATAGGGGT
66 CCCAGCT-GGATCGAGGGTTGTGGTAGCAGGACCTGACAACGAGATTGACAGCACGCAGAGGGGG
* * * * * * * *
35497272 A-TCGAGCTGATACTC-AGCTTGCGCATTATGCCTCTCCGACTGGCTTGTCCAGCCGGCTGAGCG
130 ACT-GAGCTGATACCCTA-CTGGCGCATTATGCCTCTCCGACTGACCTCTCCAGCAGACTGAGCA
* * * *
35497335 CCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCAACCCTAGTCTAAGCATAC-GA
193 CCCGCACGCTCATTCCATGGGTTGACTTAGGCATACAGAGTTCAACCCCAGTCTAAGCATACAG-
* ** * ** * * *
35497399 AGTTCATTCCCAGTCTAAGATCGGACCGGATCGTGGGTTGTAGCAGCAAGATCGACAGCATGCAG
257 AGTTCATTCCCAGTCTAAGATCAGACCAAACCAAGGGGTGTAGCAACAAGATCGACAGCACGCAG
* * **
35497464 GGGGGATCGGGCCAATCCCCGGCTTGCACATTCTGCCTCTCCGGTC-GG
322 GGGGGATCGGGCCAATCACCGGCTTGCACATTCTGCCACTCC-AACAGG
* * *
35497512 CTGAGTGCCCGTACGC-CTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTTATTCCATGTCTAAG
1 CTGAGCGCCCGCACGCTC-GTTTCGTGGGTTGGCTTAGGCATACGGAGTTTATTCCATGTCTAAG
* *
35497576 CCCCAGCTAGATCGAGGGTTGTGGTAGCGGGACC
65 CCCCAGCTGGATCGAGGGTTGTGGTAGCAGGACC
35497610 GGCAGCATGC
Statistics
Matches: 377, Mismatches: 81, Indels: 16
0.80 0.17 0.03
Matches are distributed among these distances:
367 4 0.01
368 369 0.98
369 4 0.01
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (369 bp):
CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTTATTCCATGTCTAAGC
CCCAGCTGGATCGAGGGTTGTGGTAGCAGGACCTGACAACGAGATTGACAGCACGCAGAGGGGGA
CTGAGCTGATACCCTACTGGCGCATTATGCCTCTCCGACTGACCTCTCCAGCAGACTGAGCACCC
GCACGCTCATTCCATGGGTTGACTTAGGCATACAGAGTTCAACCCCAGTCTAAGCATACAGAGTT
CATTCCCAGTCTAAGATCAGACCAAACCAAGGGGTGTAGCAACAAGATCGACAGCACGCAGGGGG
GATCGGGCCAATCACCGGCTTGCACATTCTGCCACTCCAACAGG
Found at i:35497895 original size:26 final size:26
Alignment explanation
Indices: 35497866--35497918 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35497856 GTTGGCTTAG
35497866 GCATACGGAGTTCAGT-CCATGTCTAA
1 GCATACGGAGTTCAGTCCCA-GTCTAA
*
35497892 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCAGTCCCAGTCTAA
35497918 G
1 G
35497919 ATTTTGAGTG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCAGTCCCAGTCTAA
Found at i:35498965 original size:159 final size:158
Alignment explanation
Indices: 35498801--35499105 Score: 371
Period size: 158 Copynumber: 1.9 Consensus size: 158
35498791 CCAGTCAGAC
** * *
35498801 CGAGGGTTGTGGCAGCGGGACC-AGCAACATGTAGAGGGGGACCAGACCGATCCCTGACTTGCAC
1 CGAGGGTTGTGGCAGCAAGACCGA-CAACACGTA-AGGGGGACCAGACCGATCCCTGACTTACAC
* * *
35498865 ATTATGCCTCTCCGGTTGGCTCAGCACCCGAATGCTCGTTTCATGGGTTGACTTAGGCATACGGA
64 ATTATGCCTCTCCGGTCGGCTCAGCACCCGAACGCTCGTTTCATGGGTTGACTTAAGCATACGGA
35498930 GTTCATTCC-TAGTCTAAGATTGGAATGGAT
129 GTTCATTCCAT-GTCTAAGATTGGAATGGAT
* * * * * *
35498960 CGAGGGTTGTGGCAGCAAGATCGACAGCACGTAAGGGGGACCGGGCTGATCCCTGACTTACGCAT
1 CGAGGGTTGTGGCAGCAAGACCGACAACACGTAAGGGGGACCAGACCGATCCCTGACTTACACAT
* * * * * * * * *
35499025 TTTGCGTCTCCGGTCGGCTGAGCGCCCGCACGTTCGTTTCGTGGGTTGGCTTAAGCATGCGGAGT
66 TATGCCTCTCCGGTCGGCTCAGCACCCGAACGCTCGTTTCATGGGTTGACTTAAGCATACGGAGT
35499090 TCATTCCATGTCTAAG
131 TCATTCCATGTCTAAG
35499106 CATACAGAGT
Statistics
Matches: 122, Mismatches: 22, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
158 94 0.77
159 27 0.22
160 1 0.01
ACGTcount: A:0.20, C:0.25, G:0.31, T:0.25
Consensus pattern (158 bp):
CGAGGGTTGTGGCAGCAAGACCGACAACACGTAAGGGGGACCAGACCGATCCCTGACTTACACAT
TATGCCTCTCCGGTCGGCTCAGCACCCGAACGCTCGTTTCATGGGTTGACTTAAGCATACGGAGT
TCATTCCATGTCTAAGATTGGAATGGAT
Found at i:35499242 original size:183 final size:183
Alignment explanation
Indices: 35498921--35499413 Score: 472
Period size: 183 Copynumber: 2.7 Consensus size: 183
35498911 GTTGACTTAG
* ** * *
35498921 GCATACGGAGTTCATTCCTAGTCTAAGATTGGAATGGATCGAGGGTTGTGGCAGCAAGATCGACA
1 GCATACGGAGTTCATTCCTAGTCTAAGA-TAGACCGGACCGAGGGTTGCGGCAGCAAGATCGACA
* * * * * * * *
35498986 GCACGTAAGGGGGACCGGGCTGATCCCTGACTTACGCATTTTGCGTCTCCGGTCGGCTGAGCGCC
65 GCACATAAGGGGGACCAGGCCGATCCCTGACTTACGCATTCTGCCTCTCCGCTCAGCTGAGCACC
* * * * *
35499051 CGCACGTTCGTTTCGTGGGTTGGCTTAAGCATGCGGAGTTCATTCCAT-GTCTAA
130 CACACGTTCATTCCGTGGGTTGACTTAAGCATGCGAAGTTCA-TCCATAGTCTAA
* * * * * *
35499105 GCATACAGAGTTCATTCCTAATCTATGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATTGACA
1 GCATACGGAGTTCATTCCTAGTCTAAGAT-AGACCGGACCGAGGGTTGCGGCAGCAAGATCGACA
* *
35499170 GCACAT-AGGGGGACTAGGCCGAT-CCTGGGCTTACGCATTCTGCCTCTCCTGCT-AGCTGAGCA
65 GCACATAAGGGGGACCAGGCCGATCCCT-GACTTACGCATTCTGCCTCTCC-GCTCAGCTGAGCA
* *
35499232 CCCACACGTTCATTCCGTGGGTTGACTTAGGCATGCGAAGTTCATCCCTAGTCTAA
128 CCCACACGTTCATTCCGTGGGTTGACTTAAGCATGCGAAGTTCATCCATAGTCTAA
* * * ** * *
35499288 GCATACGGAGTTCATTCCCAGTCTAAGATTGAACCGGACTGAGGGTTGCAACAGCAGGATCGATA
1 GCATACGGAGTTCATTCCTAGTCTAAGATAG-ACCGGACCGAGGGTTGCGGCAGCAAGATCGACA
* ** * * * * * * * * * *
35499353 GCTCGCAGGGGGGACCGGGCCAATCCCCGGCTTGCGCATTCTTCTTCTCCGGTCGGCTGAG
65 GCACATAAGGGGGACCAGGCCGATCCCTGACTTACGCATTCTGCCTCTCCGCTCAGCTGAG
35499414 TGCCTGCACG
Statistics
Matches: 249, Mismatches: 52, Indels: 16
0.79 0.16 0.05
Matches are distributed among these distances:
182 8 0.03
183 142 0.57
184 97 0.39
185 2 0.01
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (183 bp):
GCATACGGAGTTCATTCCTAGTCTAAGATAGACCGGACCGAGGGTTGCGGCAGCAAGATCGACAG
CACATAAGGGGGACCAGGCCGATCCCTGACTTACGCATTCTGCCTCTCCGCTCAGCTGAGCACCC
ACACGTTCATTCCGTGGGTTGACTTAAGCATGCGAAGTTCATCCATAGTCTAA
Found at i:35499800 original size:26 final size:26
Alignment explanation
Indices: 35499764--35499815 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
35499754 CTTGGCTTAG
35499764 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
35499790 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
35499816 TATTTTGAGC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:35500999 original size:158 final size:159
Alignment explanation
Indices: 35500633--35501013 Score: 378
Period size: 158 Copynumber: 2.4 Consensus size: 159
35500623 TTCGGCCGGT
* * * * **
35500633 TGAGCACCCGCACACACATTTCGTGGGTTGGCGTAGGCATAGGGAGTTCATT-CCATGTCTAAGC
1 TGAGCGCCCGCACACTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCA-GTCTAAGC
* *
35500697 CCCAACTGGACCGAGGGTTGTGGCAGCGCGATCGGCAGCACGCAGAGGGGGACTGGGTCGATCCC
65 CCCAACCGGACCGAGGGTTGTGGCAGCGCGATCGACAGCACGCAGAGGGGGACTGGGTCGATCCC
* *** **
35500762 CGGCTTGTGCATTATGCCTCTCCAGTCGGG
130 CAGCTTACACATTATGCCTCTCCAGTCGAC
* * * * * * * * * *
35500792 TCAGTGCCTGCTCACTCGTTTCGTGGGTTGAGTGAGGCATATA-ACGTTCATTCCCAGTCTATGG
1 TGAGCGCCCGCACACTCATTTCGTGGGTTGACTTAGGCATACAGA-GTTCATTCCCAGTCTAAGC
* ** * * *
35500856 TCGGACCGGACCGAGGGTTGTGGCTGCAG-GATCGACAGCATGTAG-GGGGGACTGGGTCGATCC
65 CCCAACCGGACCGAGGGTTGTGGCAGC-GCGATCGACAGCACGCAGAGGGGGACTGGGTCGATCC
* *
35500919 CCAGCTTACACATTCTGCCTTTCC-GATCGAC
129 CCAGCTTACACATTATGCCTCTCCAG-TCGAC
*
35500950 TGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCA-TCCCTAGTCTAAGC
1 TGAGCGCCCGCACACTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCC-AGTCTAAGC
35501014 ATATAGAGTT
Statistics
Matches: 174, Mismatches: 42, Indels: 13
0.76 0.18 0.06
Matches are distributed among these distances:
157 5 0.03
158 86 0.49
159 79 0.45
160 4 0.02
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.24
Consensus pattern (159 bp):
TGAGCGCCCGCACACTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCC
CCAACCGGACCGAGGGTTGTGGCAGCGCGATCGACAGCACGCAGAGGGGGACTGGGTCGATCCCC
AGCTTACACATTATGCCTCTCCAGTCGAC
Found at i:35501022 original size:26 final size:26
Alignment explanation
Indices: 35500986--35501038 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35500976 GTTGACTTAG
35500986 GCATACAGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
*
35501012 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
35501038 G
1 G
35501039 ATCGGATCAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:35502071 original size:159 final size:160
Alignment explanation
Indices: 35501688--35502085 Score: 385
Period size: 159 Copynumber: 2.5 Consensus size: 160
35501678 CTCAATCTAA
** * * *
35501688 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACTGGACCAAGGGTTACGACAACAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGACAACAGGATCGACA
* ** * * * *
35501753 GCACGCAG-GGGGGA-CTGGGCTGATCCCTGGCTTGTGTATTCTGCCTCTCCGGCCGGTTGAGCA
66 GCACGTAGAGGGGGATCTAAGCTGATCCCTGGCTTGCGTATTATGCCTCTCCGGCCGGCTCAGCA
* *
35501816 CCCGTACACCCATTTCGTGGGTTGGCTTAG
131 CCCGCACACCCATTTCGTGGGTTGACTTAG
* ** * ** * ** * * *
35501846 GCATAAGGAGTTCATTCCACA-TCTAAGCCCCAACCAGATTGAGGGTTGTGGGAGC-GAGACCCA
1 GCATACGGAGTTCATTCC-CAGTCTAAGATCGAACCAGACCGAGGGTTGCGACAACAG-GATCGA
* * *
35501909 CAGCACGTAGAGGGGGATC-AAGTTGATCCTTGGCTTGCGTATTATGCCTCTTCGGCCGGCTCAG
64 CAGCACGTAGAGGGGGATCTAAGCTGATCCCTGGCTTGCGTATTATGCCTCTCCGGCCGGCTCAG
** * * *
35501973 TGCCCGCACGCTCATTTCGTGGGTTGACTTAT
129 CACCCGCACACCCATTTCGTGGGTTGACTTAG
* * * *
35502005 GCATACGTAGTTCATTCCCAGTCTAAGATCGGACCAGACCGATGGTTGCGACAACAGGATTGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGACAACAGGATCGACA
*
35502070 GCATGTA-AGGGGGATC
66 GCACGTAGAGGGGGATC
35502086 GACAGCATGC
Statistics
Matches: 183, Mismatches: 51, Indels: 12
0.74 0.21 0.05
Matches are distributed among these distances:
157 1 0.01
158 61 0.33
159 119 0.65
160 2 0.01
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (160 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGACAACAGGATCGACA
GCACGTAGAGGGGGATCTAAGCTGATCCCTGGCTTGCGTATTATGCCTCTCCGGCCGGCTCAGCA
CCCGCACACCCATTTCGTGGGTTGACTTAG
Found at i:35502089 original size:20 final size:21
Alignment explanation
Indices: 35502061--35502104 Score: 63
Period size: 20 Copynumber: 2.1 Consensus size: 21
35502051 TGCGACAACA
* *
35502061 GGATTGACAGCATGTA-AGGG
1 GGATCGACAGCATGCAGAGGG
35502081 GGATCGACAGCATGCAGAGGG
1 GGATCGACAGCATGCAGAGGG
35502102 GGA
1 GGA
35502105 CCGGGTCGAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 14 0.67
21 7 0.33
ACGTcount: A:0.30, C:0.14, G:0.43, T:0.14
Consensus pattern (21 bp):
GGATCGACAGCATGCAGAGGG
Found at i:35503236 original size:26 final size:26
Alignment explanation
Indices: 35503206--35503287 Score: 139
Period size: 26 Copynumber: 3.2 Consensus size: 26
35503196 TGGGTTGGCT
35503206 TAAGCATACGGAGTTCATTCCATGTC
1 TAAGCATACGGAGTTCATTCCATGTC
35503232 TAAGCATACGGAGTTCATTCCATGTC
1 TAAGCATACGGAGTTCATTCCATGTC
*
35503258 TAAGCATACGGGGTTCATTCCCA-GTC
1 TAAGCATACGGAGTTCATT-CCATGTC
35503284 TAAG
1 TAAG
35503288 AGTTTGAGCC
Statistics
Matches: 54, Mismatches: 1, Indels: 2
0.95 0.02 0.04
Matches are distributed among these distances:
26 51 0.94
27 3 0.06
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCATGTC
Found at i:35504310 original size:159 final size:157
Alignment explanation
Indices: 35503983--35504355 Score: 444
Period size: 159 Copynumber: 2.4 Consensus size: 157
35503973 CCCAGTCTAA
** ** **
35503983 GCATACGGAGTTCATTCCCGGTCTAAG-ATTGGACCAGATTGAGGGTTGTGGTAGCAGGATCGAC
1 GCATACGGAGTTCATTCCATGTCTAAGCCCT-G-CCAGACCGAGGGTTGTGGTAGCAGGATCGAC
* * * * * * *
35504047 AGCACGTAGGGGGGATCGGACTGATCCCCGGCTTACGCATTCTACCTCTCCAACCTGCTGAGCGC
64 AGCACGCAGGGGGGACCGGACCGATCCCCGGCTTACGCATTATACCTCCCCAACCGGCTCAGCGC
* * *
35504112 CTGCATACCCGTTTCGTGGGTTGGCTTAG
129 CCGCACACCCGTTTCATGGGTTGGCTTAG
*
35504141 GCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCAGACCGAGGGTTGTGGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCATGTCTAAGCCCT-GCCAGACCGAGGGTTGTGGTAGCAGGATCGACA
* * * * *
35504206 GCACGCAGAGGGGGACC-GAGCCGATGCCCGGCTTGCGCATTATGCCTCCCCGATCGGCTCAGCG
65 GCACGCAG-GGGGGACCGGA-CCGATCCCCGGCTTACGCATTATACCTCCCCAACCGGCTCAGCG
* *
35504270 CCCGCACGCTCGTTTCATGGGTTGGCTTAG
128 CCCGCACACCCGTTTCATGGGTTGGCTTAG
* *
35504300 GCATACGGAGTTCATTCCATGTCTAAGCCCCTGTCGGACCGAGGGTTGTGGTAGCA
1 GCATACGGAGTTCATTCCATGTCTAAG-CCCTGCCAGACCGAGGGTTGTGGTAGCA
35504356 AGACCGGCAG
Statistics
Matches: 183, Mismatches: 28, Indels: 7
0.84 0.13 0.03
Matches are distributed among these distances:
158 63 0.34
159 116 0.63
160 4 0.02
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGCCCTGCCAGACCGAGGGTTGTGGTAGCAGGATCGACAG
CACGCAGGGGGGACCGGACCGATCCCCGGCTTACGCATTATACCTCCCCAACCGGCTCAGCGCCC
GCACACCCGTTTCATGGGTTGGCTTAG
Found at i:35504513 original size:26 final size:26
Alignment explanation
Indices: 35504483--35504535 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
35504473 GTTGACTTAG
*
35504483 GCATATGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
35504509 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
35504535 G
1 G
35504536 ATCAAATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:35505097 original size:20 final size:21
Alignment explanation
Indices: 35505052--35505095 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
35505042 GACCGACAGC
35505052 GGGATCGACAGCACGCAGAGG
1 GGGATCGACAGCACGCAGAGG
*
35505073 GGGATCGACAGCACGTAGAGG
1 GGGATCGACAGCACGCAGAGG
35505094 GG
1 GG
35505096 ATAAAACGGG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.27, C:0.20, G:0.45, T:0.07
Consensus pattern (21 bp):
GGGATCGACAGCACGCAGAGG
Found at i:35505330 original size:26 final size:26
Alignment explanation
Indices: 35505301--35505353 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35505291 GTTGACTTAG
*
35505301 GCATACAGAGTTTA-TCCCCAGTCTAA
1 GCATACAGAGTTCACT-CCCAGTCTAA
35505327 GCATACAGAGTTCACTCCCAGTCTAA
1 GCATACAGAGTTCACTCCCAGTCTAA
35505353 G
1 G
35505354 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCACTCCCAGTCTAA
Found at i:35505724 original size:171 final size:169
Alignment explanation
Indices: 35505377--35505724 Score: 428
Period size: 171 Copynumber: 2.0 Consensus size: 169
35505367 GAGGGTTGGG
* * * *
35505377 CAGCAGGATCGATAGCACACAGAGGGGATCGGGCTGATCCCCGACTTACACATTTGCCTCTCTGA
1 CAGCGGGATCGACAGCACACAGAGGGGACCGGGCTGATCCCCGACTTACACATTTGCCTCTCCGA
* * * *
35505442 CCGACTAAGCACCCGCATGCTTGTTTCATGGGATGGCTTAGGCATACGGAGTTCATTCCATGTCT
66 CCGACTAAGCACCAGCACGCTCGTTTCATGGGATGGCTTAGGCATACAGAGTTCATTCCATGTCT
* * * *
35505507 AAGCCCTAGTCGAATCGAGGGTTATGGTAGTAGGACCCA
131 AAGCCCTAGTAGAACCGAGGGTTATGGCAGCAGGACCCA
* ** ** * *
35505546 TAGCGGGATCGACAGCACGTAGAGGGAGACCGGGCTGATCCGTGGCTTACTCATTATGCCTCTCC
1 CAGCGGGATCGACAGCACACAGAGGG-GACCGGGCTGATCCCCGACTTACACATT-TGCCTCTCC
* * * *
35505611 GACCGACTGAGCACTAGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGT
64 GACCGACTAAGCACCAGCACGCTCGTTTCATGGGATGGCTTAGGCATACAGAGTTCATTCCATGT
* * *
35505676 CTAAGCCCTAGCTAG-ACCGAGGGTTGTGGCAGCAGGATCGA
129 CTAAGCCCTAG-TAGAACCGAGGGTTATGGCAGCAGGACCCA
35505717 CAGCGGGA
1 CAGCGGGA
35505725 CTAGTCTATG
Statistics
Matches: 149, Mismatches: 27, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
169 21 0.14
170 23 0.15
171 103 0.69
172 2 0.01
ACGTcount: A:0.22, C:0.26, G:0.29, T:0.23
Consensus pattern (169 bp):
CAGCGGGATCGACAGCACACAGAGGGGACCGGGCTGATCCCCGACTTACACATTTGCCTCTCCGA
CCGACTAAGCACCAGCACGCTCGTTTCATGGGATGGCTTAGGCATACAGAGTTCATTCCATGTCT
AAGCCCTAGTAGAACCGAGGGTTATGGCAGCAGGACCCA
Found at i:35506143 original size:159 final size:159
Alignment explanation
Indices: 35505807--35506236 Score: 359
Period size: 159 Copynumber: 2.7 Consensus size: 159
35505797 TAGCACGTAG
* * * * * * * * *
35505807 GGGGGACCTGGCCGATCCCCG-GTATATGCATTTTGCCTCTCCAGTCGACTGAGCACCCGCACAC
1 GGGGGACCAGGCCCATCCCCGACT-TACGCATTCTACCTCTCCAGTCGGCTCAGCACCCACAC-C
* ** * * * * * ** * * *
35505871 C-CGTTTTGTGGGTTGGCTTAGACATAGGGAGTTCATTCCATGTCTAAGCCCTAGA-CGGACCAA
64 CTCATTTCATGGGTCGACTTAGGCATACGGAGTTTATTCCATGTCTAAG-ATTGGACCGGATCGA
*
35505934 GGGTTGTGGCAATAGGACTGACAGCATGCAAA
128 GGGTTGTGGCAACAGGACTGACAGCATGCAAA
* * * ** *
35505966 GGGGGACCGGGCCCATCCCCGACTTATGCATTCTGCCTCTCCAG-CTGGCTCAGTGCCCACACGC
1 GGGGGACCAGGCCCATCCCCGACTTACGCATTCTACCTCTCCAGTC-GGCTCAGCACCCACACCC
*
35506030 TCGTTTCATGGGTCGACTTAGGCATACGGAGTTTATTCGCA-GTCTAAGATTGGACCGGATCGAG
65 TCATTTCATGGGTCGACTTAGGCATACGGAGTTTATTC-CATGTCTAAGATTGGACCGGATCGAG
* *
35506094 GGTTGCT-GCAACAGGATTGACAGCATGCAGA
129 GGTTG-TGGCAACAGGACTGACAGCATGCAAA
* *** * * * * * * *
35506125 GGGGGACTAGGTTGATCCCTGGCTTGCGTATTCTACCTCTCTAGTCGGTTGAGCACCCACACCCT
1 GGGGGACCAGGCCCATCCCCGACTTACGCATTCTACCTCTCCAGTCGGCTCAGCACCCACACCCT
* *
35506190 CATTTCATGGGTTGGCTTAGGCATACGGAGTTTATTCCATGTCTAAG
66 CATTTCATGGGTCGACTTAGGCATACGGAGTTTATTCCATGTCTAAG
35506237 CATACGGAGT
Statistics
Matches: 218, Mismatches: 45, Indels: 16
0.78 0.16 0.06
Matches are distributed among these distances:
158 7 0.03
159 206 0.94
160 5 0.02
ACGTcount: A:0.20, C:0.27, G:0.28, T:0.25
Consensus pattern (159 bp):
GGGGGACCAGGCCCATCCCCGACTTACGCATTCTACCTCTCCAGTCGGCTCAGCACCCACACCCT
CATTTCATGGGTCGACTTAGGCATACGGAGTTTATTCCATGTCTAAGATTGGACCGGATCGAGGG
TTGTGGCAACAGGACTGACAGCATGCAAA
Found at i:35506246 original size:26 final size:26
Alignment explanation
Indices: 35506210--35506263 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
35506200 GTTGGCTTAG
*
35506210 GCATACGGAGTTTATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
35506236 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
35506262 GC
1 GC
35506264 TCACCCCGAA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:35506614 original size:26 final size:26
Alignment explanation
Indices: 35506565--35506617 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
35506555 GTTGACTTAT
* *
35506565 GCATATGGAGTTCATTTCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
35506591 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
35506617 G
1 G
35506618 ATTTTTAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:35507054 original size:26 final size:26
Alignment explanation
Indices: 35507018--35507070 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
35507008 GTTGACTTAG
35507018 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
35507044 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
35507070 G
1 G
35507071 ATCAGATCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:35507095 original size:15 final size:16
Alignment explanation
Indices: 35507075--35507106 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
35507065 TCTAAGATCA
35507075 GATCGACAGCA-GCAG
1 GATCGACAGCACGCAG
35507090 GATCGACAGCACGCAG
1 GATCGACAGCACGCAG
35507106 G
1 G
35507107 GGGGATCGAG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.69
16 5 0.31
ACGTcount: A:0.31, C:0.28, G:0.34, T:0.06
Consensus pattern (16 bp):
GATCGACAGCACGCAG
Found at i:35507316 original size:13 final size:13
Alignment explanation
Indices: 35507298--35507325 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
35507288 TACACATTAT
35507298 GCCTCTCCGATCG
1 GCCTCTCCGATCG
35507311 GCCTCTCCGATCG
1 GCCTCTCCGATCG
35507324 GC
1 GC
35507326 TGAGTGCCCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.07, C:0.46, G:0.25, T:0.21
Consensus pattern (13 bp):
GCCTCTCCGATCG
Found at i:35507392 original size:26 final size:26
Alignment explanation
Indices: 35507362--35507414 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
35507352 GTTGACTTAG
35507362 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* * *
35507388 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
35507414 G
1 G
35507415 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:35507909 original size:26 final size:26
Alignment explanation
Indices: 35507857--35507909 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35507847 GTTGGCTTAG
*
35507857 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTATAA
35507883 GCATACGGAGTTCATTCCCA-GTATAA
1 GCATACGGAGTTCATT-CCATGTATAA
35507909 G
1 G
35507910 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTATAA
Found at i:35508614 original size:26 final size:26
Alignment explanation
Indices: 35508576--35508628 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
35508566 GGGTTGACTG
*
35508576 AGGCATACGGAGTTCATCCCCAGTCT
1 AGGCATACAGAGTTCATCCCCAGTCT
*
35508602 AGGCATACAGAGTTCATTCCCAGTCT
1 AGGCATACAGAGTTCATCCCCAGTCT
35508628 A
1 A
35508629 AGATCAGACT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
AGGCATACAGAGTTCATCCCCAGTCT
Found at i:35509396 original size:26 final size:26
Alignment explanation
Indices: 35509358--35509410 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
35509348 GGCTCAAAAT
35509358 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35509384 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
35509410 C
1 C
35509411 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35509896 original size:26 final size:26
Alignment explanation
Indices: 35509860--35509912 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
35509850 CCTGTCTGAT
35509860 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
* *
35509886 CTTAGATTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
35509912 C
1 C
35509913 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:35510256 original size:26 final size:26
Alignment explanation
Indices: 35510227--35510279 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
35510217 CTGATCCGAT
35510227 CTTAGAATGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
* *
35510253 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
35510279 C
1 C
35510280 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Found at i:35511489 original size:26 final size:27
Alignment explanation
Indices: 35511453--35511505 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 27
35511443 TCGATCTTAC
35511453 ACTGGGAATGAACTCCGTATG-CTAAG
1 ACTGGGAATGAACTCCGTATGCCTAAG
* *
35511479 ACTGGGGATGAACTTCGTATGCCTAAG
1 ACTGGGAATGAACTCCGTATGCCTAAG
35511506 TCAACCCACG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (27 bp):
ACTGGGAATGAACTCCGTATGCCTAAG
Found at i:35512834 original size:159 final size:157
Alignment explanation
Indices: 35512481--35512853 Score: 392
Period size: 157 Copynumber: 2.4 Consensus size: 157
35512471 GGCTCAAAAT
* * * *
35512481 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATGCGGGCACTCAGC
* * * * * * * * *
35512546 CGACCGAAGAGGCAGAATGCGCAAGCCGTGGATCTATCCGTTCCCCCTACGTGCTGTCGATCCTA
66 AGACCGAAGAGGCAGAACGCACAAGCCGTGGATCGACCCGTCCCCCCTACGTGCTGCCAATCCCA
* * *
35512611 CTACTGCAACCCTCGGTCTGGTTCGAT
131 CTACAGCAACCCTCGGTCTGGCTCGAG
** * * *
35512638 CTTAGACTGGGAATGAACTTTGTATGCATAAGTCAACCCACGAAATGAGCATGCGGGCACTGAGA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATGCGGGCACTCAG-
* * * * *
35512703 CAG-TCGAAGAGGCATAACGCATAAGCCGTGGTTCGACCCGGTCCCCCTCTACGTGTTGCCAATC
65 CAGACCGAAGAGGCAGAACGCACAAGCCGTGGATCGACCC-GTCCCCC-CTACGTGCTGCCAATC
* * *
35512767 CCGCTACCAG-AACCCTCGGTCTGGCTGGGG
128 CCACTA-CAGCAACCCTCGGTCTGGCTCGAG
** *
35512797 CTTAGACAT-GGAATGAACTCCCCATGCCTAAGCCAACCCATGAAATGAGCATGCGGG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATGCGGG
35512854 TGCTCAACCG
Statistics
Matches: 175, Mismatches: 36, Indels: 8
0.80 0.16 0.04
Matches are distributed among these distances:
157 83 0.47
158 8 0.05
159 81 0.46
160 3 0.02
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.20
Consensus pattern (157 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATGCGGGCACTCAGC
AGACCGAAGAGGCAGAACGCACAAGCCGTGGATCGACCCGTCCCCCCTACGTGCTGCCAATCCCA
CTACAGCAACCCTCGGTCTGGCTCGAG
Found at i:35513347 original size:26 final size:26
Alignment explanation
Indices: 35513311--35513361 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
35513301 GGTCAGATCG
35513311 TAGACTGGGAATGAACTCTATATGCT
1 TAGACTGGGAATGAACTCTATATGCT
*
35513337 TAGACTGGGAATGAACTCTGTATGC
1 TAGACTGGGAATGAACTCTATATGC
35513362 CCAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.29
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCTATATGCT
Found at i:35514484 original size:158 final size:158
Alignment explanation
Indices: 35514191--35514533 Score: 377
Period size: 158 Copynumber: 2.2 Consensus size: 158
35514181 CTGGTCTGAT
* * * *
35514191 CTTAGACTAGGAATGAACTCTGTATGCATAAGTCAACCCACGAAATGAGCGTGCAGGCACTGAGC
1 CTTAGACTAGGAATGAACTCTCTATGCATAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAGC
* ** * * * * * *
35514256 TGATTGAAGAGGCATAATGCACAAGCCGGGGATCGCCCGGTCCCCCTCTGCGTGCTTTCGATCCC
66 CGACCGAAGAGGCAGAATACACAAGCCGAGGATCGCCCAGTCCCCCTCTGCGTGCTGTCAATCCC
* * *
35514321 GCTACCATAACCCTCGGTCCGGCTGGGG
131 ACTACCACAACCCTCGATCCGGCTGGGG
* * *
35514349 CTTAGAC-ATGGAATGAACTCTCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 CTTAGACTA-GGAATGAACTCTCTATGCATAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAG
* **
35514413 CCGACCGGAGAGGCAGAATACGTAAGCCGAGGATCGACCCAGTCCCCC-CTGCGTGCTGTCAATC
65 CCGACCGAAGAGGCAGAATACACAAGCCGAGGATCG-CCCAGTCCCCCTCTGCGTGCTGTCAATC
* * * * **
35514477 CTACTACCGCAACCCTCGATCC-GATCCGAT
129 CCACTACCACAACCCTCGATCCGGCT-GGGG
*
35514507 CTTAGACTAGGAATGAACTCTGTATGC
1 CTTAGACTAGGAATGAACTCTCTATGC
35514534 TTAGACTGGG
Statistics
Matches: 152, Mismatches: 29, Indels: 8
0.80 0.15 0.04
Matches are distributed among these distances:
157 3 0.02
158 138 0.91
159 11 0.07
ACGTcount: A:0.25, C:0.31, G:0.25, T:0.19
Consensus pattern (158 bp):
CTTAGACTAGGAATGAACTCTCTATGCATAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAGC
CGACCGAAGAGGCAGAATACACAAGCCGAGGATCGCCCAGTCCCCCTCTGCGTGCTGTCAATCCC
ACTACCACAACCCTCGATCCGGCTGGGG
Found at i:35514548 original size:26 final size:26
Alignment explanation
Indices: 35514507--35514559 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
35514497 CCGATCCGAT
*
35514507 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
35514533 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
35514559 C
1 C
35514560 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:35514916 original size:26 final size:26
Alignment explanation
Indices: 35514876--35514926 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
35514866 CGGTTCGATC
* *
35514876 TTAGACTGGGAATGAACTCTGTATGA
1 TTAGACCGGGAATGAACTCCGTATGA
* *
35514902 TTAGACCGGGGATGAGCTCCGTATG
1 TTAGACCGGGAATGAACTCCGTATG
35514927 CCTAAGTCAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.25, C:0.16, G:0.31, T:0.27
Consensus pattern (26 bp):
TTAGACCGGGAATGAACTCCGTATGA
Found at i:35515260 original size:26 final size:26
Alignment explanation
Indices: 35515231--35515283 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
35515221 CAGGTCCGAT
* *
35515231 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
35515257 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
35515283 C
1 C
35515284 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:35515572 original size:368 final size:362
Alignment explanation
Indices: 35514263--35515693 Score: 1443
Period size: 368 Copynumber: 4.0 Consensus size: 362
35514253 AGCTGATTGA
* * *
35514263 AGAGGCATAATGCACAAGCCGGGGATC-GCCCGGTCCCCCTCTGCGTGCT-T---T--CGAT--C
1 AGAGGCATAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCTCTGCATGCTGTCGATCCCGTTGCC
* * * *
35514319 --CC-GCTACCATAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCTC-TATGCCTAA
66 GTCCTGCTACCACAA-TCTCGGTCCGACTAGGGCTTAGACATGGAATGAACTC-CGTATGCCTAA
* * * *
35514380 GCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATACGTAAGCCGAGG
129 GCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGATCGAAGAGGCAGAATGCGCAAG-CGAGG
* * * * *
35514445 ATCGACCCAGTCCCCCCTGCGTGCTGTCAATCCTACTACCGCAACCCTCGATCCGATCCGATCTT
193 ATCGACCCAGTCCCCCCTACGTGCTGTCGATCCTGCTACCGCAACCCTCGGTCCGGTCCGATCTT
* * *
35514510 AGACTAGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACG
258 AGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCACG
* * * * *
35514575 AAACGAGCGTGCGGGCGTTCAGTCAACCGGAGAGGCCGATCGG
323 AAACGAGCGTGCGGGCGCTCAGTCGA-C-GA-AGGTCGGTAGG
* * * * * * *
35514618 AGAGGCATAATACGCAAGCTGGGGATCAACCCAGTCCCTCTCTGCGTGCTGTCGATCCCGCTGCC
1 AGAGGCATAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCTCTGCATGCTGTCGATCCCGTTGCC
* * * * * * * *
35514683 GATCTTGCTGCCGCAACCCTTGGTCCGGCTAGGGCTTAGACATGGAATGTACTCCGTTTGCCTAA
66 G-TCCTGCTACCACAA-TCTCGGTCCGACTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAA
* * ** * * * * *
35514748 GCCAACCCACAAAACGAGTGTGCGGGCGCTCAGTAGGTCGGAGAGGTAGAAAGCGCAAGCTGGGG
129 GCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGATCGAAGAGGCAGAATGCGCAAGC-GAGG
* * * * * * *
35514813 ATCGGCCCGGTCCCCCCTATGTGTTGTCGATCCTGCTGCCGCAACCCTCAGTCCGGTTCGATCTT
193 ATCGACCCAGTCCCCCCTACGTGCTGTCGATCCTGCTACCGCAACCCTCGGTCCGGTCCGATCTT
* * * * * *
35514878 AGACTGGGAATGAACTCTGTATGATTAGACCGGGGATGAGCTCCGTATGCCTAAGTCAACCCATG
258 AGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCACG
* ** * **
35514943 AAACAAGAATGTGGGTACTCAG-C--C---GGTC-G-A--
323 AAACGAGCGTGCGGGCGCTCAGTCGACGAAGGTCGGTAGG
* * * * * ** *
35514973 AAAGGGATAATGCACAAGTCGGGGATCAGCCTGGTCCCCCTCTGCATGCTACCGATCCCATTTGT
1 AGAGGCATAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCTCTGCATGCTGTCGATCCC-GTTG-
* * * *
35515038 CGGTCCTACTACCACAACTCTCAGTCCGACTAGGGCTTAGACATGGAATGTACTCCGTATGCCTA
64 CCGTCCTGCTACCACAA-TCTCGGTCCGACTAGGGCTTAGACATGGAATGAACTCCGTATGCCTA
* * * * *
35515103 AGCCAACCCATGAAACGAGTGTGCGGGTGCTCGGCCGATC-AGAGAGGCAGAATGCGCAAGCCAG
128 AGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGATCGA-AGAGGCAGAATGCGCAAGCGA-
* ** * * * * *
35515167 GGATCGACCCAGTCCCCTCTGTGTGCTGCCTATCCTGCTGCTGCAACCCTCGGTCAGGTCCGATC
191 GGATCGACCCAGTCCCCCCTACGTGCTGTCGATCCTGCTACCGCAACCCTCGGTCCGGTCCGATC
* *
35515232 TTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTTAACCCA
256 TTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCA
* *
35515297 TGAAACGAGCGTGCGGGTGCTCAGTCGACTAGAAAGGTCGGTAGG
321 CGAAACGAGCGTGCGGGCGCTCAGTCGAC--G-AAGGTCGGTAGG
* * *
35515342 AGAGGCATAATGTGTAAGCCGGGGATCAGCCCGGTCCCCCTCTACATGCTGTCGATCCCGTTGCC
1 AGAGGCATAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCTCTGCATGCTGTCGATCCCGTTGCC
* * *
35515407 AGTCCTGCTACCACAATGCTCGGTCTGACTGGGGCTTAGACAGGGAATGAACTCCGTATGCCTAA
66 -GTCCTGCTACCACAAT-CTCGGTCCGACTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAA
* * * * * *
35515472 GCCAACCCATGAAAGGAGCATGCGGCCGCTCAGCCGGTCGAAGAGGCAGAATGTGCAAGTCGAGG
129 GCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGATCGAAGAGGCAGAATGCGCAAG-CGAGG
***** * * *
35515537 ATCGGTTTGGCCCCCCCTACGTGCTGTCGATCCTGCTACCGTAACCCTCGGTCCGGTCTGATCTT
193 ATCGACCCAGTCCCCCCTACGTGCTGTCGATCCTGCTACCGCAACCCTCGGTCCGGTCCGATCTT
*
35515602 AGACTGGGAATGAACTTCGTATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCACG
258 AGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCACG
* *
35515667 AAACGAGCGTGCAGGCGCTCAGCCGAC
323 AAACGAGCGTGCGGGCGCTCAGTCGAC
35515694 CAGAGAGGCA
Statistics
Matches: 877, Mismatches: 163, Indels: 59
0.80 0.15 0.05
Matches are distributed among these distances:
355 70 0.08
356 255 0.29
357 4 0.00
359 4 0.00
360 1 0.00
362 3 0.00
364 2 0.00
365 4 0.00
366 1 0.00
367 7 0.01
368 474 0.54
369 52 0.06
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (362 bp):
AGAGGCATAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCTCTGCATGCTGTCGATCCCGTTGCC
GTCCTGCTACCACAATCTCGGTCCGACTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGC
CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGATCGAAGAGGCAGAATGCGCAAGCGAGGATC
GACCCAGTCCCCCCTACGTGCTGTCGATCCTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGA
CTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCACGAAA
CGAGCGTGCGGGCGCTCAGTCGACGAAGGTCGGTAGG
Found at i:35515650 original size:26 final size:26
Alignment explanation
Indices: 35515599--35515651 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
35515589 CCGGTCTGAT
* *
35515599 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
35515625 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
35515651 C
1 C
35515652 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:35516712 original size:26 final size:26
Alignment explanation
Indices: 35516676--35516728 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
35516666 CCAGTCCAAT
*
35516676 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
35516702 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35516728 C
1 C
35516729 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35517435 original size:26 final size:26
Alignment explanation
Indices: 35517397--35517446 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
35517387 GGCTCAAAAT
**
35517397 CTTAGACTGGGAATGAACTCCATACG
1 CTTAGACAAGGAATGAACTCCATACG
35517423 CTTAGACAAGGAATGAACTCCATA
1 CTTAGACAAGGAATGAACTCCATA
35517447 TGCCGAAGCC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.36, C:0.22, G:0.20, T:0.22
Consensus pattern (26 bp):
CTTAGACAAGGAATGAACTCCATACG
Found at i:35517916 original size:158 final size:158
Alignment explanation
Indices: 35517434--35517923 Score: 459
Period size: 159 Copynumber: 3.1 Consensus size: 158
35517424 TTAGACAAGG
* * * * *
35517434 AATGAACTCCATATGCCGAAGCCAACCCATGAAACGAGCGT-ACGGGCGCTCAGTCGGTCAGAGA
1 AATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCATGA-GGGCGCTCAGCCGGCCAAAGA
* * ** * **
35517498 GGCAGAATGCGCAAGCCGGGGATCGATCTGATCCCCCCTGCGTGCTGTCGATCCTATTGCCATAA
65 GGCAAAATGCGTAAGCCGGGGATCGGCCTGGTCCCCCCTGCGTGCTGTCGATCCTGCTGCCATAA
* *
35517563 -CCTCGGTCTGGTCTGATCTTAGACTAGA
130 CCCTCGGTCTGGTCCGATCTTAGACTGGA
* * ** * * * * * *
35517591 AATGAACT-TAGTATGCATAAGTTAACCCACGAAACAAGCATGCGGGCGTTGAGCCGGCCGAAGA
1 AATGAACTCCA-TATGCCTAAGCCAACCCATGAAACGAGCATGAGGGCGCTCAGCCGGCCAAAGA
* * * * * ** * * *
35517655 GGCATAATGCATAAGTCGGGGATCGGCCCGGACCCTTTCTGCGTGCTGTCGATCCCGCTGGCACA
65 GGCAAAATGCGTAAGCCGGGGATCGGCCTGGTCCC-CCCTGCGTGCTGTCGATCCTGCTGCCATA
* * **
35517720 ACCCTCGGTCCGG-CTGGGGCTTAGACTTGG-
129 ACCCTCGGTCTGGTC-CGATCTTAGAC-TGGA
* * * * *
35517750 AATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCATGAGGGCACTCAACCGGCCAAAGAG
1 AATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCATGAGGGCGCTCAGCCGGCCAAAGAG
* * * * * *
35517815 GTAAAATGCGTAAGCCGAGCATCGGCCTGGTCCCCCCTGCGTGTTGTCGATCCTGCTACCGTAAC
66 GCAAAATGCGTAAGCCGGGGATCGGCCTGGTCCCCCCTGCGTGCTGTCGATCCTGCTGCCATAAC
35517880 CCTCGGTCTGGTCCGATCTTAGACTGGA
131 CCTCGGTCTGGTCCGATCTTAGACTGGA
35517908 AATGAACTCCATATGC
1 AATGAACTCCATATGC
35517924 TTAGACTGGG
Statistics
Matches: 252, Mismatches: 72, Indels: 17
0.74 0.21 0.05
Matches are distributed among these distances:
156 1 0.00
157 75 0.30
158 80 0.32
159 94 0.37
160 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (158 bp):
AATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCATGAGGGCGCTCAGCCGGCCAAAGAG
GCAAAATGCGTAAGCCGGGGATCGGCCTGGTCCCCCCTGCGTGCTGTCGATCCTGCTGCCATAAC
CCTCGGTCTGGTCCGATCTTAGACTGGA
Found at i:35517938 original size:26 final size:26
Alignment explanation
Indices: 35517897--35517949 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
35517887 CTGGTCCGAT
35517897 CTTAGACTGGAAATGAACTCCATATG
1 CTTAGACTGGAAATGAACTCCATATG
** *
35517923 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCATATG
35517949 C
1 C
35517950 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCATATG
Found at i:35518295 original size:26 final size:26
Alignment explanation
Indices: 35518266--35518318 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35518256 CTGGTCTGAT
*
35518266 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
35518292 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
35518318 C
1 C
35518319 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:35518638 original size:26 final size:26
Alignment explanation
Indices: 35518609--35518661 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
35518599 CCGATCTGAT
*
35518609 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
35518635 CTTAGGCTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35518661 C
1 C
35518662 CTAACTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.23, C:0.19, G:0.30, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35519712 original size:26 final size:26
Alignment explanation
Indices: 35519674--35519726 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
35519664 CTGATCTGAT
35519674 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35519700 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
35519726 C
1 C
35519727 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35525639 original size:26 final size:26
Alignment explanation
Indices: 35525610--35525662 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
35525600 CTGGTTCGAT
*
35525610 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
35525636 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35525662 C
1 C
35525663 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35526378 original size:26 final size:26
Alignment explanation
Indices: 35526340--35526392 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
35526330 GGCTCAAAAT
35526340 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35526366 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
35526392 C
1 C
35526393 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35527815 original size:26 final size:26
Alignment explanation
Indices: 35527777--35527829 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
35527767 CCGGTTTGAT
*
35527777 CTTATACTAGGAATGAACTAT-GTATG
1 CTTAGACTAGGAATGAACT-TCGTATG
*
35527803 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTTCGTATG
35527829 C
1 C
35527830 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.30, C:0.15, G:0.23, T:0.32
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTTCGTATG
Found at i:35528741 original size:159 final size:159
Alignment explanation
Indices: 35528433--35528729 Score: 389
Period size: 159 Copynumber: 1.9 Consensus size: 159
35528423 ACCGATCCCA
* * * * *
35528433 CTGTCGATCCTGCTGCCACAACCCTTGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCGTATG
1 CTGTCGATCCCGCTACCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTACG
* * **
35528498 CCTAAGCCAACCCACAAAACGAGCGTTCGGGTGCTCAGCCTGTCGGAGAGGCAAAATGCACAAGC
66 CCTAAGCCAACCCACAAAACGAGCGTACAGGCACTCAGCCTGTCGGAGAGGCAAAATGCACAAGC
* *
35528563 TGGGGATCAGCCCGATCCCCCTCTGCGTG
131 CGAGGATCAGCCCGATCCCCCTCTGCGTG
* *
35528592 CTGTCGGTCCCGCTACCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTACG
1 CTGTCGATCCCGCTACCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTACG
* ** * * * * *
35528657 CCTAAGCCAACCTATGAAATGGGCGTACAGGCACTCAG-CTGGTCGGAGAGGCAGAATTCGCAAG
66 CCTAAGCCAACCCACAAAACGAGCGTACAGGCACTCAGCCT-GTCGGAGAGGCAAAATGCACAAG
35528721 CCGAGGATC
130 CCGAGGATC
35528730 GACTCGGTCC
Statistics
Matches: 116, Mismatches: 21, Indels: 2
0.83 0.15 0.01
Matches are distributed among these distances:
158 2 0.02
159 114 0.98
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.18
Consensus pattern (159 bp):
CTGTCGATCCCGCTACCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTACG
CCTAAGCCAACCCACAAAACGAGCGTACAGGCACTCAGCCTGTCGGAGAGGCAAAATGCACAAGC
CGAGGATCAGCCCGATCCCCCTCTGCGTG
Found at i:35528824 original size:26 final size:26
Alignment explanation
Indices: 35528788--35528838 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
35528778 TCGGTCTGAT
*
35528788 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
35528814 CTTAGACTGGGGATGAACTCTGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
35528839 TCCTAAGTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35529148 original size:527 final size:518
Alignment explanation
Indices: 35528018--35529555 Score: 1725
Period size: 527 Copynumber: 2.9 Consensus size: 518
35528008 AGCCAACTGG
* * * * * * * *
35528018 AGAGGCATAATGCGCAAG-TCAGGGATCGGCTCGGTCCCCTTCCGCGTGCTGTCGATCCCGTTGC
1 AGAGGCAAAATGCACAAGCT-AGGGATCAGCCCGGTCCCCCTCTGCGTGCTGTCG-TCCCGCTAC
*
35528082 CACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCTATG
64 CACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCTATG
* * * * *
35528147 AAACGGGCGTACGGGCACTCAGTCAGCTGGAGAGGCAGAATGCGCAAGTCGAGGATTGACCCGGT
129 AAATGGGCGTACGGGCACTCAG-CAGATGGAGAGGCAGAATGCGCAAGCCGAGGATCGACTCGGT
* * * ** * *
35528212 CCCCCCTGCGTGCTGTCGATCCTACTGTCGCAAGCCT-TAGTCTAAT-TCGATCTTAGACTGGGG
193 -CCCCCTGCGTGCTGTCGATCCTACTGTCGCAACCCTCGATTC-GGTCT-GATCTTAGATTGGGA
* * * *
35528275 ATGAACTCCGTATGATTGGACTGGGGAAGAACT-TCGTATGCCTAAGTTAACCCATGAAACGAGC
255 ATGAACTCCGTATGCTTAGACTGGGGATGAACTCT-GTATGCCTAAGTTAACCCAAGAAACGAGC
*
35528339 GTACAGACGCTCAACCGTCGGAAGG--AGCCGTCGAAGAGGCATAATGCGCAAGCCGAGGATCAA
319 GTAC-G-CGCTC-ACC-TCGGAAGGCCAGCCG--G-AGAGGCATAATGCGCAAGCCGGGGATCAA
** ** * *
35528402 CCCGGTCCCCTTCTGT--GTGCTACCGATCCCACTGTCGATCCTGCTGCCACAACCCT-TGGTCC
377 CCCGGTCCCC--CTGTACGTGCTGTCGATCCTGCTATCGGTCCTGCTGCCACAACCCTCT-GTCC
35528464 -AGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTTCGG
439 GA-CTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTTCGG
*** *
35528528 GTGCTCAGCCTGTCGG
503 ACACTCAGCCTGTCGA
* *
35528544 AGAGGCAAAATGCACAAGCTGGGGATCAGCCCGATCCCCCTCTGCGTGCTGTCGGTCCCGCTACC
1 AGAGGCAAAATGCACAAGCTAGGGATCAGCCCGGTCCCCCTCTGCGTGCTGTC-GTCCCGCTACC
*
35528609 ACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTACGCCTAAGCCAACCTATGA
65 ACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCTATGA
* * * *
35528674 AATGGGCGTACAGGCACTCAGCTGGTCGGAGAGGCAGAATTCGCAAGCCGAGGATCGACTCGGTC
130 AATGGGCGTACGGGCACTCAGCAGAT-GGAGAGGCAGAATGCGCAAGCCGAGGATCGACTCGGTC
* * * *
35528739 CCCTTACATGCTGCCGATCCTACTGTCGCAACCCTCGATTCGGTCTGATCTTAGATTGGGAATGA
194 CCCCTGCGTGCTGTCGATCCTACTGTCGCAACCCTCGATTCGGTCTGATCTTAGATTGGGAATGA
* * * * *
35528804 ACTCCGTATGCTTAGACTGGGGATGAACTCTGTATTCCTAAGTCAACCCACGGAACGAGTGTACG
259 ACTCCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTTAACCCAAGAAACGAGCGTAC-
* * * *
35528869 GCCGCTCAGCCAATCGGAGAGGCCAACCGGAGAGGAATAATACGCAAGCCGGGGATCAACCCAGT
323 G-CGCTCA-CC--TCGGA-AGGCCAGCCGGAGAGGCATAATGCGCAAGCCGGGGATCAACCCGGT
* * *
35528934 CCCCCTGTACGTGCTGTAGATCTTGTTCATCGGTCCTGCTGCCACAACCCTCTGTCCGACTGGGG
383 CCCCCTGTACGTGCTGTCGATCCTGCT-ATCGGTCCTGCTGCCACAACCCTCTGTCCGACTGGGG
*
35528999 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTATC-GACACTGAG
447 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGT-TCGGACACTCAG
*
35529063 TC-GATCGA
511 CCTG-TCGA
* * * *
35529071 AGAGGCATAATGCATAAGCTAGGGATTAGCCTGGTCCCCCTCTGCGTGCTGTCAGTCCCGCTACC
1 AGAGGCAAAATGCACAAGCTAGGGATCAGCCCGGTCCCCCTCTGCGTGCTGTC-GTCCCGCTACC
* * *
35529136 ACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGA
65 ACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCTATGA
* * * * * * * *
35529201 AATGGGCTTGCGGGCGCTCAGCCGATTGAAGAGGTAGAATGCGTAAGCC-AGGGATCG-GTCTGG
130 AATGGGCGTACGGGCACTCAGCAGA-TGGAGAGGCAGAATGCGCAAGCCGA-GGATCGACTC-GG
* * * **
35529264 TTCCCCCTGCGTGCTGTCGATCCTGCTATCGCAACCCTCGATGCGGTCCAATCTTAGATTGGGAA
192 -TCCCCCTGCGTGCTGTCGATCCTACTGTCGCAACCCTCGATTCGGTCTGATCTTAGATTGGGAA
* * *
35529329 TGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTTAACCCAAAAAATGAGCGT
256 TGAACTCCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTTAACCCAAGAAACGAGCGT
* * * * *
35529394 ACG-G--CA-CTC--AA--CCGGTCGGAAAGGCATAATGCGCAAGCCAGGGATCAGCCCGGTCCC
321 ACGCGCTCACCTCGGAAGGCCAGCCGGAGAGGCATAATGCGCAAGCCGGGGATCAACCCGGTCCC
* * * * * * * *
35529451 CCTCTACATGCTGTCGATCCTGCTACCGGTCTTGCTGCCACAACCCTCGGTCTGACTAGGGTTTA
386 CCTGTACGTGCTGTCGATCCTGCTATCGGTCCTGCTGCCACAACCCTCTGTCCGACTGGGGCTTA
* *
35529516 GAAATGGAATGAACTCCGTATGCCTAAGGCAACCCACAAA
451 GACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAA
35529556 CGTATGGAGG
Statistics
Matches: 867, Mismatches: 123, Indels: 57
0.83 0.12 0.05
Matches are distributed among these distances:
513 73 0.08
514 56 0.06
516 1 0.00
517 1 0.00
519 2 0.00
521 1 0.00
523 2 0.00
524 5 0.01
525 115 0.13
526 225 0.26
527 263 0.30
528 119 0.14
529 4 0.00
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (518 bp):
AGAGGCAAAATGCACAAGCTAGGGATCAGCCCGGTCCCCCTCTGCGTGCTGTCGTCCCGCTACCA
CAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCTATGAA
ATGGGCGTACGGGCACTCAGCAGATGGAGAGGCAGAATGCGCAAGCCGAGGATCGACTCGGTCCC
CCTGCGTGCTGTCGATCCTACTGTCGCAACCCTCGATTCGGTCTGATCTTAGATTGGGAATGAAC
TCCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTTAACCCAAGAAACGAGCGTACGCG
CTCACCTCGGAAGGCCAGCCGGAGAGGCATAATGCGCAAGCCGGGGATCAACCCGGTCCCCCTGT
ACGTGCTGTCGATCCTGCTATCGGTCCTGCTGCCACAACCCTCTGTCCGACTGGGGCTTAGACAT
GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTTCGGACACTCAGCCTGTCGA
Found at i:35529264 original size:159 final size:157
Alignment explanation
Indices: 35528966--35529303 Score: 401
Period size: 159 Copynumber: 2.1 Consensus size: 157
35528956 TTGTTCATCG
* * *
35528966 GTCCTGCTGCCACAACCCTCTGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAG
1 GTCCTGCTACCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAG
* * * *
35529031 CCAACCCACAAAACGAGCGTATCGACACTGAGTCGATCGAAGAGGCATAATGCATAAGCTAGGGA
66 CCAACCCACAAAACGAGCGTATCGACACTCAGCCGATCGAAGAGGCAGAATGCATAAGCCAGGGA
*
35529096 TTAGCCTGGTCCCCCTCTGCGTGCTGTC
131 TCAGCCTGGTCCCCC-CTGCGTGCTGTC
* *
35529124 AGTCCCGCTACCACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAA
1 -GTCCTGCTACCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAA
** * * * * * * *
35529189 GCCAACCCATGAAATGGGC-T-TGCGGGCGCTCAGCCGATTGAAGAGGTAGAATGCGTAAGCCAG
65 GCCAACCCACAAAACGAGCGTAT-C-GACACTCAGCCGATCGAAGAGGCAGAATGCATAAGCCAG
* * *
35529252 GGATCGGTCTGGTTCCCCCTGCGTGCTGTC
128 GGATCAGCCTGGTCCCCCCTGCGTGCTGTC
* *
35529282 GATCCTGCTATCGCAACCCTCG
1 G-TCCTGCTACCACAACCCTCG
35529304 ATGCGGTCCA
Statistics
Matches: 151, Mismatches: 25, Indels: 7
0.83 0.14 0.04
Matches are distributed among these distances:
157 2 0.01
158 31 0.21
159 118 0.78
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.21
Consensus pattern (157 bp):
GTCCTGCTACCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAG
CCAACCCACAAAACGAGCGTATCGACACTCAGCCGATCGAAGAGGCAGAATGCATAAGCCAGGGA
TCAGCCTGGTCCCCCCTGCGTGCTGTC
Found at i:35529352 original size:26 final size:26
Alignment explanation
Indices: 35529316--35529368 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
35529306 GCGGTCCAAT
*
35529316 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
35529342 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35529368 C
1 C
35529369 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35529694 original size:26 final size:26
Alignment explanation
Indices: 35529665--35529717 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
35529655 CCGGTCTGAT
35529665 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
35529691 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35529717 C
1 C
35529718 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35530750 original size:159 final size:159
Alignment explanation
Indices: 35530414--35531155 Score: 604
Period size: 159 Copynumber: 4.7 Consensus size: 159
35530404 CACAATGTAT
* * * * * * *
35530414 GCTTAGACATGAAATGAACTCCATACGCTTAAGCCAACCCACGAAACAAGCGTACGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * * * *
35530479 CC-GATCAGAGAGGTAGAATGCGTAAGTCGAGGATCAACCCAGTCCCCC-CTACGTGCTATCGAT
66 CCAG-CCGGAGAGGCAGAATGCGCAAGTCGGGGATCAGCCCGGTCCCCCTCTGCGTGCTACCGAT
* * * ** * *
35530542 CCTGTTGCTGCAACCCTCGGTCTGGTTTGA
130 CATGTTACCGCAACCCTCGGTCTGACTGGG
* * * * * * * * * *
35530572 TCTCAGA-TTGGGAATGAACTTCGTATGCATAAGTCAACCCATGAAACGAGTGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * *
35530636 GCCAGCCGAAGAGGCATAATGCGGAAGACGGGGATCAGCCCGGTCCCCCTCTGCGTGCTACCGAT
65 GCCAGCCGGAGAGGCAGAATGCGCAAGTCGGGGATCAGCCCGGTCCCCCTCTGCGTGCTACCGAT
* *
35530701 CATATTACCACAACCCTCGGTCTGACTGGG
130 CATGTTACCGCAACCCTCGGTCTGACTGGG
* * * * * *
35530731 GCTTAGACATGGAATGAACTCCCTATACCTAAGCCAACCCACGAAATGAGTGCGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * ** *
35530796 TCGGCCGGAGAGGCAGAATTTGCAAGTCGGGGATC-GACCCGGTCCCCCT-TGCGTGCTATCGAT
66 CCAGCCGGAGAGGCAGAATGCGCAAGTCGGGGATCAG-CCCGGTCCCCCTCTGCGTGCTACCGAT
* * * * * * *
35530859 CTTGTTGCCGCAACCTTCAGTTCAGTCT-GA
130 CATGTTACCGCAACCCTC-GGTCTGACTGGG
* * * * ** *
35530889 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATAAGCGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * ** * *
35530953 GCCAACCGGAGAGGCATAATGCACAAGTTGGGGATCAGCTCGGTCCGTCTCTGTGTGCTGCC-AG
65 GCCAGCCGGAGAGGCAGAATGCGCAAGTCGGGGATCAGCCCGGTCCCCCTCTGCGTGCTACCGA-
* * *
35531017 TCCTGCTACCGCAACCCTTGGT-TCGACTGGG
129 TCATGTTACCGCAACCCTCGGTCT-GACTGGG
* * *
35531048 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * *
35531113 CC-GACCGGAGAGGCAGAATACGCAAGTCGAGGATCAACCCGGT
66 CCAG-CCGGAGAGGCAGAATGCGCAAGTCGGGGATCAGCCCGGT
35531156 TCCTCCTGCA
Statistics
Matches: 450, Mismatches: 120, Indels: 27
0.75 0.20 0.05
Matches are distributed among these distances:
157 2 0.00
158 206 0.46
159 240 0.53
160 2 0.00
ACGTcount: A:0.25, C:0.28, G:0.27, T:0.20
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCAGCCGGAGAGGCAGAATGCGCAAGTCGGGGATCAGCCCGGTCCCCCTCTGCGTGCTACCGATC
ATGTTACCGCAACCCTCGGTCTGACTGGG
Found at i:35530921 original size:158 final size:156
Alignment explanation
Indices: 35530426--35531233 Score: 570
Period size: 158 Copynumber: 5.1 Consensus size: 156
35530416 TTAGACATGA
* * * * * * * * *
35530426 AATGAACTCCATACGCTTAAGCCAACCCACGAAACAAGCGTACGGGTGCTCAGCCGATCAGAGAG
1 AATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAACCGGAGAG
* * * * * * *
35530491 GTAGAATGCGTAAGTCGAGGATCAACCCAGTCCCCCCTACGTGCTATCGATCCTGTTGCTGCAAC
66 GCAGAATGCGCAAGTCGGGGATC-ACCCGGTCCCCCTTGCGTGCTATCGATCCTGTTGCCGCAAC
* * * *
35530556 CCTCGGTCTGGT-TTGATCTCAGATTGGG
130 CTTCGGTC--GTCTGGATCTTAGACTGGG
* * * * * * * *
35530584 AATGAACTTCGTATGCATAAGTCAACCCATGAAACGAGTGTGCGGGCGCTGAGCCAGCCGAAGAG
1 AATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAACCGGAGAG
* * * * * * * *
35530649 GCATAATGCGGAAGACGGGGATCAGCCCGGTCCCCCTCTGCGTGCTACCGATCATATTACCACAA
66 GCAGAATGCGCAAGTCGGGGATCA-CCCGGTCCCCCT-TGCGTGCTATCGATCCTGTTGCCGCAA
* * **
35530714 CCCTCGGTCTGACTGGGGCTTAGACAT-GG
129 CCTTCGGTC-GTCTGGATCTTAGAC-TGGG
* * * * * * ** **
35530743 AATGAACTCCCTATACCTAAGCCAACCCACGAAATGAGTGCGCGGGTGCTCAATCGGCCGGAGAG
1 AATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAACCGGAGAG
** *
35530808 GCAGAATTTGCAAGTCGGGGATCGACCCGGTCCCCCTTGCGTGCTATCGATCTTGTTGCCGCAAC
66 GCAGAATGCGCAAGTCGGGGATC-ACCCGGTCCCCCTTGCGTGCTATCGATCCTGTTGCCGCAAC
*
35530873 CTTCAGTTCAGTCT-GATCTTAGACTGGG
130 CTTC-GGTC-GTCTGGATCTTAGACTGGG
* * ** *
35530901 AATGAACTCCGTATGCCTAAGTCAACCCACAAAATAAGCGTGCGGGCGCTGAGCCAACCGGAGAG
1 AATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAACCGGAGAG
* * * * ** * * * * *
35530966 GCATAATGCACAAGTTGGGGATCAGCTCGGTCCGTCTCTGTGTGCT-GCCAGTCCTGCTACCGCA
66 GCAGAATGCGCAAGTCGGGGATCA-CCCGGTCCCCCT-TGCGTGCTATCGA-TCCTGTTGCCGCA
* **
35531030 ACCCTT-GGTTCGACTGGGGCTTAGACAT-GG
128 A-CCTTCGG-TCGTCTGGATCTTAGAC-TGGG
* * * * *
35531060 AATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCAGCCGACCGGAGAG
1 AATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAACCGGAGAG
* * * * * ** * *
35531125 GCAGAATACGCAAGTCGAGGATCAACCCGGTTCCTCC-TGCATGCTGTCGATCCTACTGTCACAA
66 GCAGAATGCGCAAGTCGGGGATC-ACCCGG-TCCCCCTTGCGTGCTATCGATCCTGTTGCCGCAA
* *
35531189 CCTTCGATCCGAT-TCGATCTTAGACTGGG
129 CCTTCGGT-CG-TCTGGATCTTAGACTGGG
*
35531218 AATGAACTACGTATGC
1 AATGAACTCCGTATGC
35531234 TTAGACTGGG
Statistics
Matches: 498, Mismatches: 131, Indels: 42
0.74 0.20 0.06
Matches are distributed among these distances:
157 9 0.02
158 243 0.49
159 234 0.47
160 12 0.02
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.21
Consensus pattern (156 bp):
AATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAACCGGAGAG
GCAGAATGCGCAAGTCGGGGATCACCCGGTCCCCCTTGCGTGCTATCGATCCTGTTGCCGCAACC
TTCGGTCGTCTGGATCTTAGACTGGG
Found at i:35530989 original size:317 final size:314
Alignment explanation
Indices: 35530414--35531233 Score: 928
Period size: 317 Copynumber: 2.6 Consensus size: 314
35530404 CACAATGTAT
* * *
35530414 GCTTAGACATGAAATGAACT-CC-ATACGCTTAAGCCAACCCACGAAACAAGCGTACGGGTGCTC
1 GCTTAGACATGGAATGAACTCCCTATAC-C-TAAGCCAACCCACGAAACGAGCGTGCGGGTGCTC
* * * * * * *
35530477 AGCCGATCAGAGAGGTAGAATGCGTAAGTCGAGGATCAACCCAGTCCCCCCTACGTGCTATCGAT
64 AGCCGACCGGAGAGGCAGAATACGCAAGTCGAGGATCAACCCGGT-CCCCCTGCGTGCTATCGAT
* * * * * * *
35530542 CCTGTTGCTGCAACCCTCGGTCTGGTTTGATCTCAGATTGGGAATGAACTTCGTATGCATAAGTC
128 CCTGTTGCCGCAACCTTCGATC-AG-TTGATCTTAGACTGGGAATGAACTACGTATGCATAAGTC
** * * * **
35530607 AACCCATGAAACGAGTGTGCGGGCGCTGAGCCAGCCGAAGAGGCATAATGCGGAAGACGGGGATC
191 AACCCACAAAACAAGCGTGCGGGCGCTGAGCCAACCGAAGAGGCATAATGCACAAGACGGGGATC
*
35530672 AGCCCGGTCCCCCTCTGCGTGCTACC-GATCATATTACCACAACCCTCGG-TCTGACTGGG
256 AGCCCGGTCCCCCTCTGCGTGCTACCAG-TCATACTACCACAACCCTCGGTTC-GACTGGG
* * * *
35530731 GCTTAGACATGGAATGAACTCCCTATACCTAAGCCAACCCACGAAATGAGTGCGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCCTATACCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
* * ** * * *
35530796 TCGGCCGGAGAGGCAGAATTTGCAAGTCGGGGATCGACCCGGTCCCCCTTGCGTGCTATCGATCT
66 CCGACCGGAGAGGCAGAATACGCAAGTCGAGGATCAACCCGGTCCCCC-TGCGTGCTATCGATCC
* * *
35530861 TGTTGCCGCAACCTTCAGTTCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
130 TGTTGCCGCAACCTTC-GATCAGT-TGATCTTAGACTGGGAATGAACTACGTATGCATAAGTCAA
* * **
35530926 CCCACAAAATAAGCGTGCGGGCGCTGAGCCAACCGGAGAGGCATAATGCACAAGTTGGGGATCAG
193 CCCACAAAACAAGCGTGCGGGCGCTGAGCCAACCGAAGAGGCATAATGCACAAGACGGGGATCAG
* ** * * * * * *
35530991 CTCGGTCCGTCTCTGTGTGCTGCCAGTCCTGCTACCGCAACCCTTGGTTCGACTGGG
258 CCCGGTCCCCCTCTGCGTGCTACCAGTCATACTACCACAACCCTCGGTTCGACTGGG
* * *
35531048 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATACCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
* * *
35531113 CCGACCGGAGAGGCAGAATACGCAAGTCGAGGATCAACCCGGTTCCTCCTGCATGCTGTCGATCC
66 CCGACCGGAGAGGCAGAATACGCAAGTCGAGGATCAACCCGG-TCCCCCTGCGTGCTATCGATCC
** * * *
35531178 TACTGTCACAACCTTCGATCCGATTCGATCTTAGACTGGGAATGAACTACGTATGC
130 TGTTGCCGCAACCTTCGATCAG-TT-GATCTTAGACTGGGAATGAACTACGTATGC
35531234 TTAGACTGGG
Statistics
Matches: 420, Mismatches: 73, Indels: 20
0.82 0.14 0.04
Matches are distributed among these distances:
316 11 0.03
317 391 0.93
318 14 0.03
319 4 0.01
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.21
Consensus pattern (314 bp):
GCTTAGACATGGAATGAACTCCCTATACCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
CCGACCGGAGAGGCAGAATACGCAAGTCGAGGATCAACCCGGTCCCCCTGCGTGCTATCGATCCT
GTTGCCGCAACCTTCGATCAGTTGATCTTAGACTGGGAATGAACTACGTATGCATAAGTCAACCC
ACAAAACAAGCGTGCGGGCGCTGAGCCAACCGAAGAGGCATAATGCACAAGACGGGGATCAGCCC
GGTCCCCCTCTGCGTGCTACCAGTCATACTACCACAACCCTCGGTTCGACTGGG
Found at i:35531243 original size:26 final size:26
Alignment explanation
Indices: 35531207--35531259 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
35531197 CCGATTCGAT
35531207 CTTAGACTGGGAATGAACTACGTATG
1 CTTAGACTGGGAATGAACTACGTATG
* *
35531233 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTACGTATG
35531259 C
1 C
35531260 CTAAGTCCAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:35531833 original size:159 final size:157
Alignment explanation
Indices: 35531393--35531826 Score: 442
Period size: 159 Copynumber: 2.7 Consensus size: 157
35531383 GGTCCTGCTG
* * * *
35531393 CCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCAT
1 CCACAACCCTCGGTCCGGC-AGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAC
* * * * *
35531458 AAAACGAGCGTGCGGGCGCTCAACCGGCCGAAAAGGCAGAATGTGCAAGTCGGGGATCGGCTCAG
65 AAAACGAGCGTGCGGGCGCTCAGCCGGCCG-AGAGGCAGAATGCGCAAGCCGGGGATCAGCTCAG
35531523 TCCCCCCTTGCGTGCTGTCGATCCTACTA
129 TCCCCCCTTGCGTGCTGTCGATCCTACTA
* ** * * * *
35531552 CCACAACCCTCGGTCCGGTCTGATCTTAAAC-TGGGAATGAACTCCGTATGCCTGAGTCAACCCT
1 CCACAACCCTCGGTCCGG-CAGGGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCA
* * * * * * * *
35531616 CAAAATGAGCGTACGGGCGCTGAGCCAGCCGGAGAGGCATAATGCGTAAGCCGGGGATCAGTTCG
64 CAAAACGAGCGTGCGGGCGCTCAGCCGGCC-GAGAGGCAGAATGCGCAAGCCGGGGATCAGCTCA
* * *
35531681 GT-CCCTCTCTGCGTGCTGTCGGT-CTCGCTA
128 GTCCCCCCT-TGCGTGCTGTCGATCCT-ACTA
* * *
35531711 CCACAACCCTCGGTCTGGCAAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACTCAC
1 CCACAACCCTCGGTCCGGC-AGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAC
* * * * * *
35531776 GAAACGGGCATGCGGGTGCTCAGTCGGCCAGAGAGGTAGAATGCGCAAGCC
65 AAAACGAGCGTGCGGGCGCTCAGCCGGCC-GAGAGGCAGAATGCGCAAGCC
35531827 AAGGATCGAT
Statistics
Matches: 219, Mismatches: 49, Indels: 14
0.78 0.17 0.05
Matches are distributed among these distances:
158 9 0.04
159 207 0.95
160 3 0.01
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.19
Consensus pattern (157 bp):
CCACAACCCTCGGTCCGGCAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACA
AAACGAGCGTGCGGGCGCTCAGCCGGCCGAGAGGCAGAATGCGCAAGCCGGGGATCAGCTCAGTC
CCCCCTTGCGTGCTGTCGATCCTACTA
Found at i:35533378 original size:26 final size:26
Alignment explanation
Indices: 35533349--35533401 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
35533339 CCGGTCTGCT
*
35533349 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
35533375 CTTAGACTGGGGATGAATTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35533401 C
1 C
35533402 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35534122 original size:26 final size:26
Alignment explanation
Indices: 35534071--35534123 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
35534061 GGCTCAAAAT
* *
35534071 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
35534097 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
35534123 C
1 C
35534124 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:35534470 original size:159 final size:157
Alignment explanation
Indices: 35534096--35534526 Score: 395
Period size: 159 Copynumber: 2.7 Consensus size: 157
35534086 AACTTCGTAT
*
35534096 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACTCACGAAACGAGG-GTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAAC-AGGCGTGCGGGCGCTCA
* ** * *
35534160 ATCGGTCGGAGAGGCAAAATACGCAAGCCGGGGATCAGCCCGATCCCCCCTACTTGCTGTCAATC
65 ATCGGCCAAAGAGGCAAAATACGCAAGCCGGGGATCAGCCCGATCCCCCCTACATGCTATCAATC
** ** *
35534225 CTGCTACCACAACCCTTGGTCCGGTCGA
130 CCACTACCACAACCCTCAGTCCGGTAGA
* * * *
35534253 ACTTAGAC-TGTGAATGAACTCCGTATGCATAAGTCAACCCACGAAAC-GAGCGTGCGGGCGCT-
1 GCTTAGACATG-GAATGAACTCCATATGCCTAAGCCAACCCACGAAACAG-GCGTGCGGGCGCTC
* * * ** ** * * *
35534315 GAGCTGGCCAAAGAGGCATAATGTGCAAGTTGGGGATCGGCCCGGTCCCCCTCTGCATGCTATCA
64 AATC-GGCCAAAGAGGCAAAATACGCAAGCCGGGGATCAGCCCGATCCCCC-CTACATGCTATCA
* * * * *
35534380 GTCCCACTGCCATAACCCTCAGTCTGGCTAGG
127 ATCCCACTACCACAACCCTCAGTCCGG-TAGA
* * *
35534412 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACAGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACAGGCGTGCGGGCGCTCAA
* ** ** * * *
35534477 CCTACCGGAGAGGTAGAATACGCAAGCCGGGGATC-GACCCGGTCCCCCCT
66 TCGGCCAAAGAGGCAAAATACGCAAGCCGGGGATCAG-CCCGATCCCCCCT
35534527 GCGTGCTGTC
Statistics
Matches: 216, Mismatches: 48, Indels: 19
0.76 0.17 0.07
Matches are distributed among these distances:
155 1 0.00
156 5 0.02
157 86 0.40
158 32 0.15
159 88 0.41
160 4 0.02
ACGTcount: A:0.25, C:0.31, G:0.26, T:0.18
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACAGGCGTGCGGGCGCTCAA
TCGGCCAAAGAGGCAAAATACGCAAGCCGGGGATCAGCCCGATCCCCCCTACATGCTATCAATCC
CACTACCACAACCCTCAGTCCGGTAGA
Found at i:35534600 original size:26 final size:26
Alignment explanation
Indices: 35534571--35534623 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
35534561 CCGGTTCGAT
35534571 CTTAGACTGG-GAATGAACTCCGTATG
1 CTTAGACTGGAG-ATGAACTCCGTATG
35534597 CTTAGACTGGAGATGAACTCCGTATG
1 CTTAGACTGGAGATGAACTCCGTATG
35534623 C
1 C
35534624 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAGATGAACTCCGTATG
Found at i:35535261 original size:26 final size:26
Alignment explanation
Indices: 35535223--35535275 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
35535213 TCAGTCTGAT
35535223 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
35535249 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
35535275 C
1 C
35535276 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:35535760 original size:26 final size:26
Alignment explanation
Indices: 35535724--35535776 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
35535714 CCAGTTTGAT
* *
35535724 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
35535750 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35535776 C
1 C
35535777 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35536246 original size:184 final size:184
Alignment explanation
Indices: 35535920--35536289 Score: 472
Period size: 184 Copynumber: 2.0 Consensus size: 184
35535910 TTTGGCTGGG
* * *
35535920 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAGCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATACGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * *
35535985 CTGGTCGGAAAGGTAGAATACACAAGCCGGGGATCGATCTGGTCCCCCCTGCATGCTGTAGATCC
66 CTGCTCGGAAAGGCAGAATACACAAGCAGGGGATCGACCTGATCCCCCCTACATGCTATAGATCC
* *
35536050 TACTACCGTAACCCTTGGTCCGATCCGATCTTAGACTGGGAATGAACTCTGTAT
131 TACTACCGTAACCCTCGGTCCGATCCGATCATAGACTGGGAATGAACTCTGTAT
* * * *
35536104 GCTTAGACATGGAATGAACTTCATACGCCTAAGCTAACCCACGAAATGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCATACGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * *
35536169 CTGACT-GGAGAGGCAGAATGCTCAAGCAGGGGATCGGCCTGATCCCTCCTACGTGCTATCGATC
66 CTG-CTCGGAAAGGCAGAATACACAAGCAGGGGATCGACCTGATCCCCCCTACATGCTATAGATC
* ** * *
35536233 CTGCTGTCGTAACCCTCGGTCCGATCTGATCATAGATTGGGAATGAACTCTGTAT
130 CTACTACCGTAACCCTCGGTCCGATCCGATCATAGACTGGGAATGAACTCTGTAT
35536288 GC
1 GC
35536290 CTAAGTCAAC
Statistics
Matches: 157, Mismatches: 28, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
184 156 0.99
185 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.27, T:0.22
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCATACGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CTGCTCGGAAAGGCAGAATACACAAGCAGGGGATCGACCTGATCCCCCCTACATGCTATAGATCC
TACTACCGTAACCCTCGGTCCGATCCGATCATAGACTGGGAATGAACTCTGTAT
Found at i:35537340 original size:26 final size:26
Alignment explanation
Indices: 35537303--35537354 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
35537293 GCTCAAAATA
35537303 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
35537329 TTAGACAT-GGAATGAACTCCGTATGC
1 TTAGAC-TGGGAATGAACTCCGTATGC
35537355 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:35538649 original size:157 final size:157
Alignment explanation
Indices: 35538090--35538649 Score: 431
Period size: 158 Copynumber: 3.6 Consensus size: 157
35538080 TGCGCAAGTT
* * * * * * * *
35538090 GGGGATCGACCCAGTCCCCCTCTGCGTGCTATCGGTCCTGCTACCACAACCCTCAGTCCTGCTGC
1 GGGGATCGACCCGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCACAACCCTCTG-CCCGGTCC
* *
35538155 G-GCTTAGACATGGAATGAACTCTTTATGCCTAAGCCAACCTTGGAACGGGCGTGCGGGTGCTCA
65 GAGCTTAGACATGGAATGAACTCTCTATGCCTAAGCCAACCTTGAAACGGGCGTGCGGGTGCTCA
*
35538219 CCCAA-TCGAAAAGGCAAAATGCACAAGCC
130 ACCAACT-G-AAAGGCAAAATGCACAAGCC
* * ** *** * * *** *
35538248 GAGGACCGACCCGGTCCCCC-CTGCGTGCTTTCGATCCTGCTTG-TGTAACCCTCGGTCTAATCT
1 GGGGATCGACCCGGTCCCCCTCTGCGTGCTACCGATCCTGC-TGCCACAACCCTCTGCCCGGTCC
* ** * * * *
35538311 GATCTTAGAC-TAGGAATGAACT-TCGTATGCAAAAGTCAACCCATGAAACGAGCATGCGGGTGC
65 GAGCTTAGACAT-GGAATGAACTCTC-TATGCCTAAGCCAA-CCTTGAAACGGGCGTGCGGGTGC
* * * * * *
35538374 TGAACCGACCGGTAAGGCATAATGCATAAGCC
127 TCAACC-AACTGAAAGGCAAAATGCACAAGCC
* * * * * ** *
35538406 AGGGATCGATCTGGTCCCCCTTTGCGTG-TCGCCGATCCTGCTGCCACAACCCT-TGGTTC-GAC
1 GGGGATCGACCCGGTCCCCCTCTGCGTGCT-ACCGATCCTGCTGCCACAACCCTCT-GCCCGGTC
* *
35538468 TGGGGCTTAGACATGGAATGAACTCTCTATGCCTAAGCCAACCTTGAAACGGGCGTGCGGGTGCT
64 -CGAGCTTAGACATGGAATGAACTCTCTATGCCTAAGCCAACCTTGAAACGGGCGTGCGGGTGCT
* * **
35538533 CAGCCAACTGAAAGGGCAGAATGCACAAATC
128 CAACCAACTGAAA-GGCAAAATGCACAAGCC
* * *
35538564 GGGGATCGGCCCGGTCCCCC-CTGCGTGCTACCGATCCTGCTGCCGCAACACTCTGCCCGGTCCG
1 GGGGATCGACCCGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCACAACCCTCTGCCCGGTCCG
*
35538628 ATCTTAGAC-TGGGAATGAACTC
66 AGCTTAGACAT-GGAATGAACTC
35538650 CGTATGCTTG
Statistics
Matches: 304, Mismatches: 79, Indels: 39
0.72 0.19 0.09
Matches are distributed among these distances:
156 7 0.02
157 106 0.35
158 134 0.44
159 54 0.18
160 3 0.01
ACGTcount: A:0.23, C:0.31, G:0.26, T:0.21
Consensus pattern (157 bp):
GGGGATCGACCCGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCACAACCCTCTGCCCGGTCCG
AGCTTAGACATGGAATGAACTCTCTATGCCTAAGCCAACCTTGAAACGGGCGTGCGGGTGCTCAA
CCAACTGAAAGGCAAAATGCACAAGCC
Found at i:35538662 original size:25 final size:25
Alignment explanation
Indices: 35538634--35538681 Score: 80
Period size: 25 Copynumber: 1.9 Consensus size: 25
35538624 TCCGATCTTA
35538634 GACT-GGGAATGAACTCCGTATGCTT
1 GACTAGGG-ATGAACTCCGTATGCTT
35538659 GACTAGGGATGAACTCCGTATGC
1 GACTAGGGATGAACTCCGTATGC
35538682 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 19 0.86
26 3 0.14
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.25
Consensus pattern (25 bp):
GACTAGGGATGAACTCCGTATGCTT
Found at i:35539391 original size:26 final size:26
Alignment explanation
Indices: 35539353--35539405 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
35539343 GGCTCAAAAT
35539353 CTTAGGCTGGGAATGAACTCTGTATG
1 CTTAGGCTGGGAATGAACTCTGTATG
35539379 CTTAGGCAT-GGAATGAACTCTGTATG
1 CTTAGGC-TGGGAATGAACTCTGTATG
35539405 C
1 C
35539406 CTAAGTCACC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGGCTGGGAATGAACTCTGTATG
Found at i:35539621 original size:158 final size:155
Alignment explanation
Indices: 35539388--35539879 Score: 444
Period size: 159 Copynumber: 3.1 Consensus size: 155
35539378 GCTTAGGCAT
* * *
35539388 GGAATGAACTCTGTATGCCTAAGTCACCCCACGAAACGAGCGTGCGGTCGCTC-AGCC-GACCGA
1 GGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGG-CAC-CAAGCCGGA-CGA
*
35539451 AGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCCTGGTACCG
63 AGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCCTGCT-CCG
35539516 CAACCCTCGGTCAGATCTGATCTTAGACTG
127 CAACCCTCGGTCA-ATCTGATCTTAGACTG
* *
35539546 GGAATGAACTTTGTATGCATAAGTCAACCCACGAAACGAGTGTGCAGGCACCAAGCCGGACGAAG
1 GGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGTGTGC-GGCACCAAGCCGGACGAAG
* * * * * * *
35539611 AGGCATAATGCGCAAGCCGAGGA-CTGACCTGGTCCCCCTCTGCGTGCTGTCGGTCCCGCTGCCA
65 AGGCAGAATGCGCAAGCCGGGGATC-GACCCGATCCCCC-CTGCGTGCTGTCGATCCTGCT-CCG
* * ** *
35539675 CAACCTTCAGTCCAA-CTGGGGCTTAAACAT-
127 CAACCCTCGGT-CAATCT-GATCTTAGAC-TG
** * * * * * *
35539705 GGAATGAACTCCCTATGCCTCAA-CCAACCCATGAAACGGGTGTACGGGCATTCAA-CCGGTC-A
1 GGAATGAACTCTGTATGCCT-AAGTCAACCCACGAAACGAGTGTGC-GGCA-CCAAGCCGGACGA
* * * * * *
35539767 GAGAGGCAGACTGCACAAGCCGGGGATC-AGCCCGATCCCCCTTGCGTGCTGTCAATCCTACTGC
63 -AGAGGCAGAATGCGCAAGCCGGGGATCGA-CCCGATCCCCCCTGCGTGCTGTCGATCCTGCTCC
* *
35539831 GCAACCCTCGGTCCTATCCGATCTTAGACTG
126 GCAACCCTCGGT-CAATCTGATCTTAGACTG
*
35539862 GGAATGAACTCCGTATGC
1 GGAATGAACTCTGTATGC
35539880 TTAGACTGGG
Statistics
Matches: 268, Mismatches: 51, Indels: 31
0.77 0.15 0.09
Matches are distributed among these distances:
156 1 0.00
157 39 0.15
158 105 0.39
159 114 0.43
160 9 0.03
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.18
Consensus pattern (155 bp):
GGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGCACCAAGCCGGACGAAGA
GGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCCTGCTCCGCAAC
CCTCGGTCAATCTGATCTTAGACTG
Found at i:35539882 original size:26 final size:26
Alignment explanation
Indices: 35539853--35539905 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
35539843 CCTATCCGAT
35539853 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
35539879 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35539905 C
1 C
35539906 CTAAGTTAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35541463 original size:26 final size:26
Alignment explanation
Indices: 35541425--35541477 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
35541415 GGCTCAAAAT
35541425 CTTAGAATGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
35541451 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGA-ATGGGAATGAACTCCGTATG
35541477 C
1 C
35541478 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Found at i:35541794 original size:159 final size:158
Alignment explanation
Indices: 35541450--35541951 Score: 502
Period size: 159 Copynumber: 3.2 Consensus size: 158
35541440 AACTCCGTAT
* * *
35541450 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * *
35541515 -CAGGCCGGAGAGGTAGAATGCACAAGTC-AGGGATTGGCCTGGTCCCCC-CTACGTGTTGTCGA
66 CCA--CCGGAGAGGCAGAATGCGCAAGCCGA-GAATCGGCCCGGTCCCCCTCTACGTGCTGTCGA
**
35541577 TCCTGCTACCACAACCCTCAGTCTGGTCTGA
128 TCCCACTACCACAACCCTCAGTCTGGTCTGA
** * * * *
35541608 TTTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGCGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * *
35541672 GCCATCCGGAGAGGCATAATGCGCAAGCCGAGAATCAGCCCGGTCCCCCTCTATGTGCTGTCGAT
65 GCCA-CCGGAGAGGCAGAATGCGCAAGCCGAGAATCGGCCCGGTCCCCCTCTACGTGCTGTCGAT
* * *
35541737 CCCACTGCCACAACCCTCGGT-TCGG-CTGGG
129 CCCACTACCACAACCCTCAGTCT-GGTCT-GA
* * *
35541767 GCTTAGACATGGAATGAACTTCC-TATGCCTAAGCCAACCCACGAAACGGGCGTGCAGACGCTCA
1 GCTTAGACATGGAATGAAC-TCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * **
35541831 GCCGACCGGAGAGGCAGAATGCGCAAGCCGAGAATCGGCCCGAT-CCCC-CTGCGTGCTACCGAT
65 GCC-ACCGGAGAGGCAGAATGCGCAAGCCGAGAATCGGCCCGGTCCCCCTCTACGTGCTGTCGAT
** ** *
35541894 CCTGCTACCGGAACCCTCAGTCCGGTCTGA
129 CCCACTACCACAACCCTCAGTCTGGTCTGA
* *
35541924 TCTTATAC-TGGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
35541952 TTAGACTGGG
Statistics
Matches: 280, Mismatches: 51, Indels: 27
0.78 0.14 0.08
Matches are distributed among these distances:
156 4 0.01
157 50 0.18
158 97 0.35
159 124 0.44
160 5 0.02
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCACCGGAGAGGCAGAATGCGCAAGCCGAGAATCGGCCCGGTCCCCCTCTACGTGCTGTCGATCC
CACTACCACAACCCTCAGTCTGGTCTGA
Found at i:35541954 original size:26 final size:26
Alignment explanation
Indices: 35541925--35541977 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
35541915 CCGGTCTGAT
*
35541925 CTTATACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
35541951 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35541977 C
1 C
35541978 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35542965 original size:26 final size:26
Alignment explanation
Indices: 35542936--35542988 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
35542926 CTGGTTCGAT
*
35542936 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
35542962 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35542988 C
1 C
35542989 CTAAGTCATC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35543169 original size:26 final size:26
Alignment explanation
Indices: 35543133--35543186 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
35543123 GGTTCAATCT
* *
35543133 TAGACAGGGAATGACCTCTGTATGCA
1 TAGACAGGGAATGAACTCCGTATGCA
*
35543159 TAGACATGGAATGAACTCCGTATGCA
1 TAGACAGGGAATGAACTCCGTATGCA
35543185 TA
1 TA
35543187 AGCCAACCCA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.33, C:0.19, G:0.24, T:0.24
Consensus pattern (26 bp):
TAGACAGGGAATGAACTCCGTATGCA
Found at i:35543264 original size:195 final size:195
Alignment explanation
Indices: 35542916--35543290 Score: 520
Period size: 195 Copynumber: 1.9 Consensus size: 195
35542906 CTGCTATCGC
* * * * *
35542916 AACCCTCGGTCTGGTTCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACT
1 AACCCTCGGTCCGGTTCAATCTTAGACAGGGAATGAACTCTGTATGCATAGACTGGGAATGAACT
* * * * *
35542981 CCGTATGCCTAAGTCATCACATGAAACGAGCGTGCGGGCGCTCAGTCGGTCGGAGAGGCAGAATG
66 CCGTATGCATAAGCCAACACATGAAACGAGCATGCGGGCGCTCAGTCGGCCGGAGAGGCAGAATG
* *
35543046 CACAAGCCAGGGATCGACCCGATCCCCCTGCGTGCTGTCGATCCTGCTGCTGGTCTTGCTGCCGT
131 CACAAGCCAGGGACCGACCCGATCCCCCTACGTGCTGTCGATCCTGCTGCTGGTCTTGCTGCCGT
*
35543111 AACCCTCGGTCCGGTTCAATCTTAGACAGGGAATGACCTCTGTATGCATAGACAT-GGAATGAAC
1 AACCCTCGGTCCGGTTCAATCTTAGACAGGGAATGAACTCTGTATGCATAGAC-TGGGAATGAAC
* * * *
35543175 TCCGTATGCATAAGCCAACCCATGAAATGAGCATGTGGGCGCTCAGAT-GGCCGGAGAGGTAGAA
65 TCCGTATGCATAAGCCAACACATGAAACGAGCATGCGGGCGCTCAG-TCGGCCGGAGAGGCAGAA
* * * * *
35543239 TGCGCAAGCCGGGGACCGGCCCGATCCCCCTATGTGCTGTCGATCTTGCTGC
129 TGCACAAGCCAGGGACCGACCCGATCCCCCTACGTGCTGTCGATCCTGCTGC
35543291 CACAACCCTC
Statistics
Matches: 156, Mismatches: 22, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
195 154 0.99
196 2 0.01
ACGTcount: A:0.22, C:0.27, G:0.29, T:0.22
Consensus pattern (195 bp):
AACCCTCGGTCCGGTTCAATCTTAGACAGGGAATGAACTCTGTATGCATAGACTGGGAATGAACT
CCGTATGCATAAGCCAACACATGAAACGAGCATGCGGGCGCTCAGTCGGCCGGAGAGGCAGAATG
CACAAGCCAGGGACCGACCCGATCCCCCTACGTGCTGTCGATCCTGCTGCTGGTCTTGCTGCCGT
Found at i:35543503 original size:159 final size:157
Alignment explanation
Indices: 35543159--35543605 Score: 414
Period size: 159 Copynumber: 2.8 Consensus size: 157
35543149 TCTGTATGCA
* *
35543159 TAGACATGGAATGAACTCCGTATGCATAAGCCAACCCATGAAATGAGCATGTGGGCGCTCAGATG
1 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCATGTGGGCGCTCAGACG
* * * * *
35543224 GCCGGAGAGGTAGAATGCGCAAGCCGGGGACCGGCCCGATCCCCCTATGTGCTGTCGATCTTGCT
66 GCCGGAGAGGCAGAATGCGCAAGCCGGGGACCGACCCAATCCCCCTATGTGCTGCCGATCCTGCT
* * *
35543289 GCCACAACCCTCAGTCCGGTCTGATCT
131 ACCACAACCCTCAGTCCGGACTGAGCT
* * * * * *
35543316 TAGAC-TGGAAATGAACTCCGTATACCTAAGTCAACCCATGAAATGAGCGT-TCGGGTGCTGAGC
1 TAGACATGG-AATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCATGT-GGGCGCTCAGA
*** * * ** * *
35543379 CGGTTTGAGAGGCATAATGCGCAAGCCGTGGTTCGACCCAATCCCCCTCTGCGTGCTGCCGGTCC
64 CGGCCGGAGAGGCAGAATGCGCAAGCCGGGGACCGACCCAATCCCCCTAT--GTGCTGCCGATCC
* *
35543444 TGCTACCACAACCCTCGGTCC-GACTGGGGCT
127 TGCTACCACAACCCTCAGTCCGGACT-GAGCT
* * * * * * * *
35543475 TAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGACACGGGCGTGCGAGCGCTCAGCCG
1 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCATGTGGGCGCTCAGACG
* * * * * * ** * *
35543540 GTCGGAGAGGTAGAATGTGCAACCCGGGGATCGGCCCGGTCCCCCCTACGTGCTCCCGATCCTGC
66 GCCGGAGAGGCAGAATGCGCAAGCCGGGGACCGACCCAAT-CCCCCTATGTGCTGCCGATCCTGC
35543605 T
130 T
35543606 GCTGCAACCC
Statistics
Matches: 230, Mismatches: 52, Indels: 15
0.77 0.18 0.05
Matches are distributed among these distances:
156 4 0.02
157 88 0.38
158 18 0.08
159 111 0.48
160 9 0.04
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.19
Consensus pattern (157 bp):
TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCATGTGGGCGCTCAGACG
GCCGGAGAGGCAGAATGCGCAAGCCGGGGACCGACCCAATCCCCCTATGTGCTGCCGATCCTGCT
ACCACAACCCTCAGTCCGGACTGAGCT
Found at i:35543682 original size:26 final size:26
Alignment explanation
Indices: 35543631--35543683 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
35543621 CTGGTTCGAT
***
35543631 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
35543657 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
35543683 C
1 C
35543684 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:35544298 original size:682 final size:678
Alignment explanation
Indices: 35542623--35544394 Score: 1981
Period size: 695 Copynumber: 2.6 Consensus size: 678
35542613 GGTCTGGTTC
* * * * * * ** *
35542623 GATCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTCAGATGCTG
1 GATCTTAGACTGGAAATGAACTCCGTATACCAAAGTCAACCCACGAAACGAGCGTGCGGGCGATG
* * * * * * * * *
35542688 TGCCGGT-CGAGAGGCATAATGTGCAAGCC--GGAT-CA-CC-GT-CCTCTCTACGTGAT-GCTG
66 AGCCGGTCCGAGAGGCATAATGCGCAAGCCGTGGATAGACCCAATCCCCCTCTGCGTGCTACCAG
* * * *
35542745 ATCCCACCGCCACAACCCTCAGTCCGGCTGGGGCCTAGACATGGAATGAACTCCCTATGCCTAAG
131 -TCCCGCTGCCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAG
* * * * * * **
35542810 CCAACCCATGAAATGGGCGTGTGGGTGTTCAGCCGATTGGAGAGGCAGAATGCGTAAGTCAAGGA
195 CCAACCCATGAAACGGGCGTGCGGGCGCTCAGCCGATCGGAGAGGCAGAATGCGCAAGTCGGGGA
* * *
35542875 TCGGTCCGATCCCCCCTGCATGCTATCGATCCTGCTATCGCAACCCTCGGTCTGGTTCGATCTTA
260 TCGGCCCGGTCCCCCCTGCATGCTATCGATCCTGCTGTCGCAACCCTCGGTCTGGTTCGATCTTA
* * *
35542940 GACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCATCACATGA
325 GACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGA
* * *
35543005 AACGAGCGTGCGGGCGCTCAGTCGGTCGGAGAGGCAGAATGCACAAGCCAGGGATCGACCCGATC
390 AACGAGCGTGCGAGCACTCAGTCGGTCGGAGAGGCAGAAGGCACAAGCCAGGGATCGACCCGATC
* * **
35543070 CCCCTGCGTGCTGTCGATCCTGCTGCTGGTCTTGCTGCCGTAACCCTCGGTCCGGTTCAATCTTA
455 CCCCTGCGTGCTGTCGATCCCGCTGCTGGTCCTGCTGCCACAACCCTCGGTCCGG-T--A-CTT-
*
35543135 GACAGGGAATGACCTCTGTATGCATAGACATGGAATGAACTCCGTATGCATAAGCCAACCCATGA
515 -A-AGGG-A-G--C-C--T-T--ATAGACATGGAATGAACTCCGTATGCATAAGCCAACCCATAA
* * * *
35543200 AATGAGCATGTGGGCGCTCAGATGGCCGGAGAGGTAGAATGCGCAAGCCGGGGACCGGCCCGATC
568 AACGAGCATGCGGGCGCTCAGACGGCCGGAGAGGTAGAATGCACAAGCCGGGGACCGGCCCGATC
* * * *
35543265 CCCCTATGTGCTGTCGATCTTGCTGCCACAACCCTCAGTCCGGTCT
633 CCCCTATGAGCTGTCGATCCTACTACCACAACCCTCAGTCCGGTCT
* * * * * *
35543311 GATCTTAGACTGGAAATGAACTCCGTATACCTAAGTCAACCCATGAAATGAGCGTTCGGGTGCTG
1 GATCTTAGACTGGAAATGAACTCCGTATACCAAAGTCAACCCACGAAACGAGCGTGCGGGCGATG
** * * * *
35543376 AGCCGGTTTGAGAGGCATAATGCGCAAGCCGTGGTTCGACCCAATCCCCCTCTGCGTGCTGCCGG
66 AGCCGGTCCGAGAGGCATAATGCGCAAGCCGTGGATAGACCCAATCCCCCTCTGCGTGCTACCAG
* * *
35543441 TCCTGCTACCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGC
131 TCCCGCTGCCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGC
* * * * * **
35543506 CAACCCATGACACGGGCGTGCGAGCGCTCAGCCGGTCGGAGAGGTAGAATGTGCAACCCGGGGAT
196 CAACCCATGAAACGGGCGTGCGGGCGCTCAGCCGATCGGAGAGGCAGAATGCGCAAGTCGGGGAT
* * **
35543571 CGGCCCGGTCCCCCCTACGTGCTCCCGATCCTGCTG-CTGCAACCCTCGGTCTGGTTCGATCTTA
261 CGGCCCGGTCCCCCCTGCATGCTATCGATCCTGCTGTC-GCAACCCTCGGTCTGGTTCGATCTTA
* * *
35543635 GACTGGGAATGAACTTTGTATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCACAA
325 GACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGA
*
35543700 AACGAGCGTGCGAGCACTCAGTCGGTCGGAGAGGTCGGTCAGAGAGGCATAATGCGTAAGCCGGG
390 AACGAGCGTGCGAGCACTCAGTCGGTCGGAGA----GG-CAGA-AGGC---A--C--AAGCCAGG
* * *
35543765 GATC-AGCCTGGTCCCCCTCTGCGTGCTGTCGATCCCGCTGCTGGTCCTGCTGCCACAACCCTCT
442 GATCGA-CCCGAT-CCCC-CTGCGTGCTGTCGATCCCGCTGCTGGTCCTGCTGCCACAACCCTCG
* * *
35543829 GTCC-G-A-TT-A-GG-G-C-T-TAGACATGGATTGAACTCCGTATGCCTAGGCCAACCCATAAA
504 GTCCGGTACTTAAGGGAGCCTTATAGACATGGAATGAACTCCGTATGCATAAGCCAACCCATAAA
* * * ** *
35543885 ACGAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGTAGAATGCACAAGCCGGGGATTGGCCCGGTCC
569 ACGAGCATGCGGGCGCTCAGACGGCCGGAGAGGTAGAATGCACAAGCCGGGGACCGGCCCGAT-C
** * *
35543950 CCCCTATGAGCTGTCGATCCTACTACCGTAACCCTCGGTTCGGTCT
633 CCCCTATGAGCTGTCGATCCTACTACCACAACCCTCAGTCCGGTCT
* * * *
35543996 GATCTTAGATTAGG-AAT-AACTCTGTATGCCAAAGTCAACCCACGAAACGAGTGTGCGGGCGAT
1 GATCTTAGACT-GGAAATGAACTCCGTATACCAAAGTCAACCCACGAAACGAGCGTGCGGGCGAT
* * * * *
35544059 GAGCCGG-CCGAAGAGGGATAATGCGCAAGCCG-GGATAG-CCCGATCCGCCTTTGCGTGCTATC
65 GAGCCGGTCCG-AGAGGCATAATGCGCAAGCCGTGGATAGACCCAATCCCCCTCTGCGTGCTACC
*
35544121 AGTCCCGCTGCCACAACCCTCAGTCCGATTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAA
129 AGTCCCGCTGCCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAA
* *
35544186 GCCAAACCATGAAACGTGCGTGCGGGCGCTCAGCCGATCGGAGAGGCAGAATGCGCAAGTCGGGG
194 GCCAACCCATGAAACGGGCGTGCGGGCGCTCAGCCGATCGGAGAGGCAGAATGCGCAAGTCGGGG
** * *
35544251 ATCGGCCCGGTCAACCCTGCATGCTATCGATCCTGCTGTCACAACCCTCGGTCTGGTCCGATCTT
259 ATCGGCCCGGTCCCCCCTGCATGCTATCGATCCTGCTGTCGCAACCCTCGGTCTGGTTCGATCTT
* *
35544316 AGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCACG
324 AGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACG
*
35544381 AAACGAGCATGCGA
389 AAACGAGCGTGCGA
35544395 ACGCTCAGCC
Statistics
Matches: 921, Mismatches: 134, Indels: 64
0.82 0.12 0.06
Matches are distributed among these distances:
682 263 0.29
683 6 0.01
684 155 0.17
685 52 0.06
686 2 0.00
687 1 0.00
688 64 0.07
689 20 0.02
691 4 0.00
692 1 0.00
693 2 0.00
694 2 0.00
695 264 0.29
696 2 0.00
698 2 0.00
699 3 0.00
700 4 0.00
701 3 0.00
703 2 0.00
704 1 0.00
705 1 0.00
706 1 0.00
707 1 0.00
708 15 0.02
709 5 0.01
710 45 0.05
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.21
Consensus pattern (678 bp):
GATCTTAGACTGGAAATGAACTCCGTATACCAAAGTCAACCCACGAAACGAGCGTGCGGGCGATG
AGCCGGTCCGAGAGGCATAATGCGCAAGCCGTGGATAGACCCAATCCCCCTCTGCGTGCTACCAG
TCCCGCTGCCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGC
CAACCCATGAAACGGGCGTGCGGGCGCTCAGCCGATCGGAGAGGCAGAATGCGCAAGTCGGGGAT
CGGCCCGGTCCCCCCTGCATGCTATCGATCCTGCTGTCGCAACCCTCGGTCTGGTTCGATCTTAG
ACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAA
ACGAGCGTGCGAGCACTCAGTCGGTCGGAGAGGCAGAAGGCACAAGCCAGGGATCGACCCGATCC
CCCTGCGTGCTGTCGATCCCGCTGCTGGTCCTGCTGCCACAACCCTCGGTCCGGTACTTAAGGGA
GCCTTATAGACATGGAATGAACTCCGTATGCATAAGCCAACCCATAAAACGAGCATGCGGGCGCT
CAGACGGCCGGAGAGGTAGAATGCACAAGCCGGGGACCGGCCCGATCCCCCTATGAGCTGTCGAT
CCTACTACCACAACCCTCAGTCCGGTCT
Found at i:35544333 original size:158 final size:156
Alignment explanation
Indices: 35543809--35544339 Score: 455
Period size: 157 Copynumber: 3.4 Consensus size: 156
35543799 CCGCTGCTGG
* * * ** ** * *
35543809 TCCTGCTGCCACAACCCTCTGTCCGATTAGGGCTTAGACATGGATTGAACTCCGTATGCCTAGGC
1 TCCTGCTGCCACAACCCTCGGTCTGGTCCGATCTTAGACATGGAATGAACTCCGTATGCCTAAGC
* * *
35543874 CAACCCATAAAACGAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGTAGAATGCACAAGCCGGGGAT
66 CAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAG-CGGGGA-
* *
35543939 TGGCCCGGTCCCCCCT--ATGAGCTGTCGA
129 TGGCCCGGTCCACCCTGCAT--GCTATCGA
* * ** * * * *
35543967 TCCTACTACCGTAACCCTCGGT-TCGGTCTGATCTTAGA-TTAGGAAT-AACTCTGTATGCCAAA
1 TCCTGCTGCCACAACCCTCGGTCT-GGTCCGATCTTAGACAT-GGAATGAACTCCGTATGCCTAA
* * * * * * * * * *
35544029 GTCAACCCACGAAACGAGTGTGCGGGCGATGAGCCGGCCGAAGAGGGATAATGCGCAAGCCGGGA
64 GCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCGGGGA
* * * * *
35544094 TAGCCCGATCCGCCTTTGCGTGCTATC-A
129 TGGCCCGGTCCACC-CTGCATGCTATCGA
* * * * ** ** *
35544122 GTCCCGCTGCCACAACCCTCAGTCCGATTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAG
1 -TCCTGCTGCCACAACCCTCGGTCTGGTCCGATCTTAGACATGGAATGAACTCCGTATGCCTAAG
* * *
35544187 CCAAACCATGAAACGTGCGTGCGGGCGCTCAGCCGATCGGAGAGGCAGAATGCGCAAGTCGGGGA
65 CCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAG-CGGGGA
*
35544252 TCGGCCCGGTCAACCCTGCATGCTATCGA
129 T-GGCCCGGTCCACCCTGCATGCTATCGA
*
35544281 TCCTGCTGTCACAACCCTCGGTCTGGTCCGATCTTAGAC-TGGGAATGAACTCCGTATGC
1 TCCTGCTGCCACAACCCTCGGTCTGGTCCGATCTTAGACAT-GGAATGAACTCCGTATGC
35544340 TTAGACTGGG
Statistics
Matches: 281, Mismatches: 79, Indels: 26
0.73 0.20 0.07
Matches are distributed among these distances:
155 12 0.04
156 41 0.15
157 124 0.44
158 94 0.33
159 10 0.04
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.20
Consensus pattern (156 bp):
TCCTGCTGCCACAACCCTCGGTCTGGTCCGATCTTAGACATGGAATGAACTCCGTATGCCTAAGC
CAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCGGGGATG
GCCCGGTCCACCCTGCATGCTATCGA
Found at i:35544342 original size:26 final size:26
Alignment explanation
Indices: 35544313--35544365 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
35544303 CTGGTCCGAT
35544313 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
35544339 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35544365 C
1 C
35544366 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35545082 original size:26 final size:26
Alignment explanation
Indices: 35545045--35545096 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
35545035 GCTCAAACTG
35545045 TTAGACTGGGAATGAACTCCATATGC
1 TTAGACTGGGAATGAACTCCATATGC
*
35545071 TTAGACAT-GGAATGAACTCCGTATGC
1 TTAGAC-TGGGAATGAACTCCATATGC
35545097 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGC
Found at i:35545421 original size:26 final size:26
Alignment explanation
Indices: 35545385--35545437 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
35545375 CCGGTTCGAT
*
35545385 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
35545411 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35545437 C
1 C
35545438 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35545611 original size:26 final size:26
Alignment explanation
Indices: 35545580--35545632 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
35545570 CCGGTTCGAT
35545580 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
35545606 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
35545632 C
1 C
35545633 CTAGGCGAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:35546816 original size:26 final size:26
Alignment explanation
Indices: 35546787--35546839 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
35546777 CTGGTCCGAT
35546787 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
35546813 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35546839 C
1 C
35546840 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35547168 original size:170 final size:171
Alignment explanation
Indices: 35546820--35547179 Score: 397
Period size: 170 Copynumber: 2.1 Consensus size: 171
35546810 ATGCTTAGAT
* * * * *
35546820 TGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGCGCTCAACCGATCGA
1 TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCAGGCGCTCAACCGACCGA
* * * * *
35546885 AGAGGCATAATGCGCAAGCCGGGGATCAGCCCGATCCCTCTCTGCGTGCTGCCGATCCCGCTGCC
66 AGAGGCAGAATGCGCAAACCGGGGATCAGCCCGATCCCTCTCTACATGCTGCCGATCCCACTGCC
* * *
35546950 GTCCTGCTGCCACAACCCTCAGTCCGACTGGGGCTTAGACA
131 GTCCTGCTGCCACAACCCTCAGTCCGACTCGAGCTTAAACA
* * *
35546991 T-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGTGCTCAGCC-AGCCG
1 TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCAGGCGCTCAACCGA-CCG
* * * * * *
35547054 GAGAGGCAGAATGCGTAAATCGGGGATCGGCCCGATCCC-CTCCTACATGCTGTCGATCCTACTG
65 AAGAGGCAGAATGCGCAAACCGGGGATCAGCCCGATCCCTCT-CTACATGCTGCCGATCCCACTG
* ** * * * *
35547118 CTGGTCCTGCTGCTGCAACCCTCGGTCGGTC-CGATCTTAAAC-
129 C-CGTCCTGCTGCCACAACCCTCAGTCCGACTCGAGCTTAAACA
35547160 TGGGAATGAACTCCGTATGC
1 TGGGAATGAACTCCGTATGC
35547180 TTAGACATGG
Statistics
Matches: 156, Mismatches: 29, Indels: 9
0.80 0.15 0.05
Matches are distributed among these distances:
169 4 0.03
170 128 0.82
171 24 0.15
ACGTcount: A:0.22, C:0.32, G:0.27, T:0.19
Consensus pattern (171 bp):
TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCAGGCGCTCAACCGACCGA
AGAGGCAGAATGCGCAAACCGGGGATCAGCCCGATCCCTCTCTACATGCTGCCGATCCCACTGCC
GTCCTGCTGCCACAACCCTCAGTCCGACTCGAGCTTAAACA
Found at i:35547182 original size:26 final size:26
Alignment explanation
Indices: 35547153--35547205 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35547143 TCGGTCCGAT
35547153 CTTAAAC-TGGGAATGAACTCCGTATG
1 CTTAAACAT-GGAATGAACTCCGTATG
*
35547179 CTTAGACATGGAATGAACTCCGTATG
1 CTTAAACATGGAATGAACTCCGTATG
35547205 C
1 C
35547206 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAAACATGGAATGAACTCCGTATG
Found at i:35547532 original size:157 final size:159
Alignment explanation
Indices: 35547179--35547579 Score: 515
Period size: 157 Copynumber: 2.5 Consensus size: 159
35547169 ACTCCGTATG
*
35547179 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* *
35547244 CGGCCAGAGAGGCAGAATGCACAAGCCGGGGATCGACCCGATTCCCGCTTGCGTGCTGTCGATCC
66 CGGCCAGAGAGGCAGAATGCACAAGCCGGGGATCGACCCGAGTCCCCCTTGCGTGCTGTCGATCC
*** *
35547309 TACTGCTGTAACCCTCAGTCCAGTCTGAT
131 TACTGCCACAACCCTCAGTCCAGACTGAT
* * * *
35547338 CTGAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* ** * *
35547402 CCGGCC-GAGAGGCATAATGTGCAAGCCTGGGATCGGCCCG-GTCCCCCTTGCGTGCTGTCGATC
65 CCGGCCAGAGAGGCAGAATGCACAAGCCGGGGATCGACCCGAGTCCCCCTTGCGTGCTGTCGATC
* ** *
35547465 CTGCTGCCACAACCCTTGGT-CTGACTGGGA-
130 CTACTGCCACAACCCTCAGTCCAGACT--GAT
* * *
35547495 CTTAGACATGGAATGAACTCCCTACGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* *
35547560 CGACCGGAGAGGCAGAATGC
66 CGGCCAGAGAGGCAGAATGC
35547580 GTAAGCCGAG
Statistics
Matches: 207, Mismatches: 30, Indels: 11
0.83 0.12 0.04
Matches are distributed among these distances:
156 4 0.02
157 95 0.46
158 45 0.22
159 63 0.30
ACGTcount: A:0.23, C:0.31, G:0.29, T:0.17
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGAGGCAGAATGCACAAGCCGGGGATCGACCCGAGTCCCCCTTGCGTGCTGTCGATCC
TACTGCCACAACCCTCAGTCCAGACTGAT
Found at i:35547672 original size:159 final size:154
Alignment explanation
Indices: 35547186--35547680 Score: 526
Period size: 159 Copynumber: 3.1 Consensus size: 154
35547176 ATGCTTAGAC
*
35547186 ATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGCCGGCCAG
1 ATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCC-G
* * * * *
35547251 AGAGGCAGAATGCACAAGCCGGGGATCGACCCGATTCCCGCTTGCGTGCTGTCGATCCTACTGCT
65 AGAGGCAGAATGCGCAAGCC-GGGATCGGCCCGA-TCCCCCTTGCGTGCTGTCGATCCTGCTGCC
* * * * * *
35547316 GTAACCCTCAGTCCAGTCTGATCTGAGA
128 GCAACCCTCGGTCGACTCCGATCTTA-A
* * * *
35547344 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTGAGCCGGCCG
1 AT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCG
* * * *
35547409 AGAGGCATAATGTGCAAGCCTGGGATCGGCCCGGTCCCCCTTGCGTGCTGTCGATCCTGCTGCCA
65 AGAGGCAGAATGCGCAAGCC-GGGATCGGCCCGATCCCCCTTGCGTGCTGTCGATCCTGCTGCCG
* **
35547474 CAACCCTTGGTCTGACTGGGA-CTTAGA
129 CAACCCTCGGTC-GACTCCGATCTTA-A
* * * *
35547501 CATGGAATGAACTCCCTACGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGACCG
1 -ATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCC-
* * * * ** * *
35547566 GAGAGGCAGAATGCGTAAGCCGAGGATTGGCTCGATCCCCCCCTATGTGCTATCGATCCTGCTAC
64 GAGAGGCAGAATGCGCAAGCCG-GGATCGGCCCGAT-CCCCCTTGCGTGCTGTCGATCCTGCTGC
35547631 CGCAACCCTCGGTTCGA-TCCGATCTTAA
127 CGCAACCCTCGG-TCGACTCCGATCTTAA
35547659 AGTAGGAATGAACTCCGTATGC
1 A-T-GGAATGAACTCCGTATGC
35547681 TTAGACTGGG
Statistics
Matches: 279, Mismatches: 48, Indels: 19
0.81 0.14 0.05
Matches are distributed among these distances:
157 97 0.35
158 68 0.24
159 112 0.40
160 2 0.01
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.19
Consensus pattern (154 bp):
ATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGA
GAGGCAGAATGCGCAAGCCGGGATCGGCCCGATCCCCCTTGCGTGCTGTCGATCCTGCTGCCGCA
ACCCTCGGTCGACTCCGATCTTAA
Found at i:35547683 original size:26 final size:26
Alignment explanation
Indices: 35547654--35547706 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
35547644 TCGATCCGAT
*
35547654 CTTAAAGTAGGAATGAACTCCGTATG
1 CTTAAACTAGGAATGAACTCCGTATG
* * *
35547680 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAAACTAGGAATGAACTCCGTATG
35547706 C
1 C
35547707 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAAACTAGGAATGAACTCCGTATG
Found at i:35553214 original size:26 final size:26
Alignment explanation
Indices: 35553176--35553228 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
35553166 GGCTCAAAAT
35553176 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35553202 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
35553228 C
1 C
35553229 CTACGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35554170 original size:159 final size:158
Alignment explanation
Indices: 35553867--35554369 Score: 501
Period size: 159 Copynumber: 3.2 Consensus size: 158
35553857 ATTCCATATG
* * * * *
35553867 CTTAGACAT-GGAAAGAACTCCGTATGCCTAACCCAACCCACGAAACAAGTGTGTGGGCACTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCAG
* * * *
35553931 CCGGTCGAAGAGGCAAAATACGTAAGTCGGGGATCGACCCAGTCTCCCCCTGCTTGCTATCGATC
65 CCGGCCGAAGAGGCAAAATACGTAAGTCGGGGATCGACCCGGTC-CCCCCTGCATGCTGTCGATC
35553996 CTGCTGCCGCAACCCTCGGTCCGGTCTGAT
129 CTGCTGCCGCAACCCTCGGTCCGGTCTGAT
* * * * * *
35554026 CTTACACTGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTGCGGGCGCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCAGC
* * * * * * * * *
35554091 CGGCCGAAGAGGCATAATCCGTAAGTCGAGGATTGGCCTGGTCCCCCTCTCCGTGCTGTCGGTCC
66 CGGCCGAAGAGGCAAAATACGTAAGTCGGGGATCGACCCGGTCCCCC-CTGCATGCTGTCGATCC
** * * * **
35554156 CACTGCCACAACCCTCGGTTCGAT-TGGGG
130 TGCTGCCGCAACCCTCGGTCCGGTCT-GAT
* * * * *
35554185 CTTAGACAT-GGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTGCGGGTGCTCAA
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCAG
* * * * * * * *
35554249 CCAGCCGGAGAGGCAGAATGCGTAAG-CTGGGGATCGACCCGATCCCACCTGCATGCTGCCAATC
65 CCGGCCGAAGAGGCAAAATACGTAAGTC-GGGGATCGACCCGGTCCCCCCTGCATGCTGTCGATC
* * *
35554313 CTGCTGCCGCAACCCTTGATCCAGTCTGAT
129 CTGCTGCCGCAACCCTCGGTCCGGTCTGAT
35554343 CTTAGACTGGGAATGAACTCCGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
35554370 TTAGACTGGG
Statistics
Matches: 269, Mismatches: 68, Indels: 15
0.76 0.19 0.04
Matches are distributed among these distances:
157 1 0.00
158 59 0.22
159 208 0.77
160 1 0.00
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.20
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCAGC
CGGCCGAAGAGGCAAAATACGTAAGTCGGGGATCGACCCGGTCCCCCCTGCATGCTGTCGATCCT
GCTGCCGCAACCCTCGGTCCGGTCTGAT
Found at i:35554379 original size:26 final size:26
Alignment explanation
Indices: 35554343--35554395 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
35554333 CCAGTCTGAT
35554343 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
35554369 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35554395 C
1 C
35554396 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35554500 original size:184 final size:183
Alignment explanation
Indices: 35554184--35554738 Score: 641
Period size: 184 Copynumber: 3.0 Consensus size: 183
35554174 TTCGATTGGG
* * * * * *
35554184 GCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * * *
35554249 CCAGCCGGAGAGGCAGAATGCGTAAGCTGGGGATCGACCCGATCCCACCTGCATGCTGCCAATCC
66 CCAGCCGGAGAGGTAAAATGCGTAAGC-GGGGATCGGCCAGGTCCCCCCTGCATGCTGTCGATCC
*
35554314 TGCTGCCGCAACCCTTGATCCAGTCTGATCTTAGACTGGGAATGAACTCCGTAT
130 TGCTGCCGCAACCCTTGATCCAGTCCGATCTTAGACTGGGAATGAACTCCGTAT
* *
35554368 GCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * *
35554432 GTC-GATCGGAGAGGTAAAATGAGCAAGTCGGGGATCGGCCAGGTCCCCCCAGCATGCTGTCGAT
65 GCCAG-CCGGAGAGGTAAAATGCGTAAG-CGGGGATCGGCCAGGTCCCCCCTGCATGCTGTCGAT
** * *
35554496 CCTGCTGCCATAACCC-TCAGTCCAGTCCGATCTTAGATTGGGAATGAACTCCGTAT
128 CCTGCTGCCGCAACCCTTGA-TCCAGTCCGATCTTAGACTGGGAATGAACTCCGTAT
* * * * *
35554552 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGACCGTACGAGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * *
35554617 CCAGCCGGGGAGGTAAAATGCGTAAGCCGAGGATCGGCCTGGTCCCCCGCTGCGTGCTATCGATC
66 CCAGCCGGAGAGGTAAAATGCGTAAG-CGGGGATCGGCCAGGTCCCCC-CTGCATGCTGTCGATC
* * ** *
35554682 CTGCTGTCGCAACCCTCGATCC-GATCCGATCTTAGACTACGAATGAACTTCGTAT
129 CTGCTGCCGCAACCCTTGATCCAG-TCCGATCTTAGACTGGGAATGAACTCCGTAT
35554737 GC
1 GC
35554739 CTAAGTCAAT
Statistics
Matches: 309, Mismatches: 53, Indels: 17
0.82 0.14 0.04
Matches are distributed among these distances:
183 4 0.01
184 244 0.79
185 60 0.19
186 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (183 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCAGCCGGAGAGGTAAAATGCGTAAGCGGGGATCGGCCAGGTCCCCCCTGCATGCTGTCGATCCT
GCTGCCGCAACCCTTGATCCAGTCCGATCTTAGACTGGGAATGAACTCCGTAT
Found at i:35555844 original size:26 final size:26
Alignment explanation
Indices: 35555808--35555860 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
35555798 ACAGTCTGAT
*
35555808 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
35555834 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35555860 C
1 C
35555861 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35556360 original size:158 final size:157
Alignment explanation
Indices: 35556005--35556506 Score: 524
Period size: 158 Copynumber: 3.2 Consensus size: 157
35555995 CAGGCTGGGG
** * * * *
35556005 CTTAGACAAGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAAC-GAGTGTGCAGGCACTGAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAG-GCGTGCGGGCGCTGAG
* * * * * *
35556069 CCGACCGAAGAGGCAGAATACGCAAGCTGGGGATCGGCTCGATCCCCTTCTGCGTGCTGTC-AGT
65 CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCC-CCTGCGTGCTGTCGA-T
*** * ** **
35556133 CCCATTGCCACAACCCTCGATCCGGTTGGGG
128 CCTGCTGCCGCAACCCTCG-TCCGGTCCGAT
* * * *
35556164 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGCGTGCGGGCGCTCAA
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAGGCGTGCGGGCGCTGAG
* ** *
35556228 TCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCC
65 CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCC
* *
35556293 TGCTACCGCAACCCTCAGTCTGGTCCGAT
130 TGCTGCCGCAACCCTC-GTCCGGTCCGAT
* *
35556322 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTTAACCCACGAAACAAGCGTGCGGGCGCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAGGCGTGCGGGCGCTGAGC
* * * * * ** * *
35556387 CAACCGGATAGGCATAATGCGCAAGCCGGGGATTGGCCCGGTCCCCCTTGTATGTTGCCGATCCT
66 CGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCT
* * *
35556452 GCTGTCGCAACCCTCGGTCCAGTCCCAT
131 GCTGCCGCAACCCTC-GTCCGGTCCGAT
35556480 CTTAGACTGGGAATGAACTCCGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
35556507 TTAGACTGGG
Statistics
Matches: 284, Mismatches: 54, Indels: 11
0.81 0.15 0.03
Matches are distributed among these distances:
157 1 0.00
158 190 0.67
159 92 0.32
160 1 0.00
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (157 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAGGCGTGCGGGCGCTGAGC
CGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCT
GCTGCCGCAACCCTCGTCCGGTCCGAT
Found at i:35556516 original size:26 final size:26
Alignment explanation
Indices: 35556480--35556532 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
35556470 CCAGTCCCAT
35556480 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
35556506 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35556532 C
1 C
35556533 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:35556900 original size:26 final size:26
Alignment explanation
Indices: 35556848--35556901 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 26
35556838 CTGGTCAGAT
* *
35556848 CTTACACTGGGAATGAACTCTGTATG
1 CTTACACTGGGAATGAACTCCGCATG
* *
35556874 CTTAGACTGGGGATGAACTCCGCATG
1 CTTACACTGGGAATGAACTCCGCATG
35556900 CT
1 CT
35556902 AAGTCAACCC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGCATG
Found at i:35562840 original size:26 final size:25
Alignment explanation
Indices: 35562811--35562862 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
35562801 GTTGGCTTAG
*
35562811 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCA-GTCTAA
*
35562837 GCATGCAGAGTTCATTCCAGTCTAA
1 GCATACAGAGTTCATTCCAGTCTAA
35562862 G
1 G
35562863 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (25 bp):
GCATACAGAGTTCATTCCAGTCTAA
Found at i:35563894 original size:158 final size:159
Alignment explanation
Indices: 35563468--35564286 Score: 521
Period size: 158 Copynumber: 5.2 Consensus size: 159
35563458 CCCAGTCTAA
* * * * * * * **
35563468 GCATACGGAGTTCATT-CCAGTCTAAAATCAGAACGGACCAAGGGTTGCGACAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-CCAGACCGAGGGTTGTGACAGCAGGACCGGTA
* * * * * * ** * *
35563532 GCCACGC-GGGGGGGATCGGGCCGATACCC-GCTTGCACATTCTGCCTCTTC-GGCCGGCTGAGC
65 G-CACGCAGAGGGGGACCGAGCCGATCCCCAGCTTGCGCATTATGCCTCTTCTGATCGGTTCAGC
* * * *
35563594 GCCTGCACGCCCGTTTCGTGGGTTGGCTTAG
129 GCCCGTACGCTCGTTTCGTGGGTTGACTTAG
* ** * * * *
35563625 GCATAGGGAGTTCATT-CCATGTCTAAGCGCCA-CCTGGACTGAGGGTTGTGGCAGC-GGAACCA
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGCC-AGACCGAGGGTTGTGACAGCAGG-ACCG
* * * *
35563687 GCAGCACACAGAGGGGGACC-AGGTCGATCCCC-GACTTGCGCATTATGCCTCTTCTGACCGGTT
62 GTAGCACGCAGAGGGGGACCGA-GCCGATCCCCAG-CTTGCGCATTATGCCTCTTCTGATCGGTT
* * *
35563750 TAGCGCCCGTACGCTCGTTTTGTGAGTTGACTTAG
125 CAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAG
* * * * **
35563785 GCATACGAAGTTCATTCCCAGTCTAAGATTAGATC-GTA-CGAGGGTT-TCGATAGCAGGATTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-CCAG-ACCGAGGGTTGT-GACAGCAGGACCGG
* * * * * *
35563847 TAGCACGCAG-GGGGGATCGGGCCGATCCCCAGCTTGCGCATTCTGCCTC-TCCGATCAGTTGAG
63 TAGCACGCAGAGGGGGACCGAGCCGATCCCCAGCTTGCGCATTATGCCTCTTCTGATCGGTTCAG
* *
35563910 CGGCCGCTCAC-C-CGTTTCGTGGGTTGGCTTAG
128 CGCCCG-T-ACGCTCGTTTCGTGGGTTGACTTAG
* * * ** * *
35563942 GCATAGGGAGTT-TTTTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCGGGACCGGT
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGCCAGACCGAGGGTTGTGACAGCAGGACCGGT
** * *
35564006 AGCACGCAGAGGGGGACCGAGCC-AAACCCAGCTTGCGCATTATGCCTCTT-TGGTCGGCTCAGC
64 AGCACGCAGAGGGGGACCGAGCCGATCCCCAGCTTGCGCATTATGCCTCTTCTGATCGGTTCAGC
* * *
35564069 ACCCGCACGCTCGTTTCGTGGGTTGACTTAC
129 GCCCGTACGCTCGTTTCGTGGGTTGACTTAG
* * * * * ***
35564100 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGAACAGTAGGATCAAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-CCAGACCGAGGGTTGTG-ACAGCAGGACCGGT
* * * * * * * * ** *
35564165 AGCATGCA-AGAGGGACCGCGGTCGATCCCCGGCTTACGCATTCTGCCTC-TCCGATCGACTGAG
64 AGCACGCAGAGGGGGACCG-AGCCGATCCCCAGCTTGCGCATTATGCCTCTTCTGATCGGTTCAG
* * * *
35564228 CGCCTGCACGCTCGTTTCATGGGTTGGCTTAG
128 CGCCCGTACGCTCGTTTCGTGGGTTGACTTAG
35564260 GCATACGGAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
35564287 CCCCAATCGG
Statistics
Matches: 511, Mismatches: 117, Indels: 65
0.74 0.17 0.09
Matches are distributed among these distances:
156 7 0.01
157 79 0.15
158 201 0.39
159 84 0.16
160 136 0.27
161 4 0.01
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.23
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGCCAGACCGAGGGTTGTGACAGCAGGACCGGTAG
CACGCAGAGGGGGACCGAGCCGATCCCCAGCTTGCGCATTATGCCTCTTCTGATCGGTTCAGCGC
CCGTACGCTCGTTTCGTGGGTTGACTTAG
Found at i:35564460 original size:26 final size:26
Alignment explanation
Indices: 35564430--35564482 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
35564420 GTTGACTTAG
35564430 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
35564456 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
35564482 G
1 G
35564483 ATCAAACTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:35565046 original size:158 final size:158
Alignment explanation
Indices: 35564575--35565113 Score: 601
Period size: 158 Copynumber: 3.4 Consensus size: 158
35564565 CTCTCTAGTT
* *
35564575 GGCTGAGCGCCCACACGCCTGTTTCGTGGGTTGGCTTAGGCAT-GGGAGTTCATTCCATGTCTAA
1 GGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
* * * * * *
35564639 GCCCCAGCCGGACCAAGGGTTGTGGCAGCGGGACCGACAGCACGTCGAGGGGGACCGGGCCAAT-
66 GCCCCAACC-GAACAAGGGTTGTGGCAGTGGGA-TGACAGCACGTAGAGGGGGACCGGGCCGATC
* * * *
35564703 CCTCGGCTTACGCATTATGCCTCTTCAG-TC
129 CCT-GGCTTGCGCATTCTGCCTCTTCCGACC
* * * * * * * *
35564733 GGCTCAGTGCCCGCATGCTCATTTCATGAGTTGACTTAGGCATAGGGAGTTCATTCCCA-GTCTA
1 GGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTA
** * * * * * * * * *
35564797 AG--ATATCGGATCGAGGGTTGCGGTAGTAGGATCGACAGCACGCA-ATGGGGGATCGGGCCGAT
65 AGCCCCAACCGAACAAGGGTTGTGGCAGTGGGAT-GACAGCACGTAGA-GGGGGACCGGGCCGAT
35564859 CCCTGGCTTGCGCATTCTGCCTCTT-CGACC
128 CCCTGGCTTGCGCATTCTGCCTCTTCCGACC
* *
35564889 GGCTGAGCGCCTGCACCCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
1 GGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
* * *
35564954 GCCCCAACCGAACAAAGGGTTGTGGCAGTGGGATGGCAACACGTAGAGGGGGACCGGGTCGATCC
66 GCCCCAACCGAAC-AAGGGTTGTGGCAGTGGGATGACAGCACGTAGAGGGGGACCGGGCCGATCC
35565019 CTGGCTTGCGCATTCTGCCT-TTCCGACC
130 CTGGCTTGCGCATTCTGCCTCTTCCGACC
** *
35565047 GGCTGAGCGCCCGCACGCTTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
1 GGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
35565112 GC
66 GC
35565114 ATACAAAGTT
Statistics
Matches: 311, Mismatches: 58, Indels: 24
0.79 0.15 0.06
Matches are distributed among these distances:
155 5 0.02
156 112 0.36
157 7 0.02
158 149 0.48
159 35 0.11
160 3 0.01
ACGTcount: A:0.18, C:0.27, G:0.32, T:0.23
Consensus pattern (158 bp):
GGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
GCCCCAACCGAACAAGGGTTGTGGCAGTGGGATGACAGCACGTAGAGGGGGACCGGGCCGATCCC
TGGCTTGCGCATTCTGCCTCTTCCGACC
Found at i:35565184 original size:668 final size:660
Alignment explanation
Indices: 35563854--35565486 Score: 1694
Period size: 668 Copynumber: 2.4 Consensus size: 660
35563844 TGGTAGCACG
* * * * * * *
35563854 CAGGGGGGATCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCC-GATCAGTTGAGCGGCCGCT
1 CAGGGGGGACCGGGCCAATCCCCAGCTTGCGCATCCTGCCTCTCCAG-CCGGCTGAGC-GCC-CA
** *
35563918 CAC-C-CGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTTTTTCCATGTCTAAGCCCCAGCCAGAC
63 CACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGAC
** * * *
35563981 CGAGGGTTGTGGCAGCGGGACCGGTAGCACG-CAGAGGGGGACCGAGCCAAACC-CAGCTTGCGC
128 CGAGGGTTGTGGCAGCGGGACCGACAGCACGTC-GAGGGGGACCGGGCCAATCCTCGGCTTGCGC
* * *
35564044 ATTATGCCTCTTTGGTCGGCTCAGCACCCGCACGCTCGTTTCGTGGGTTGACTTACGCATACGGA
192 ATTATGCCTCTTCGGTCGGCTCAGCACCCGCACGCTCGTTTCAT-GGTTGACTTAGGCATACGGA
* *
35564109 GTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGAACAGTAGGATCAACAGCATGCAA
256 GTTCATTCCCAGTCTAAGAT---A-CGGACTGAGGGTTGCGAACAGTAGGATCAACAGCACGCAA
* * *
35564174 GAGGGACCGCGGTCGATCCCCGGCTTACGCATTCTGCCTCTCCGATCGACTGAGCGCCTGCACGC
317 GAGGGACCGCGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGACCGACTGAGCGCCTGCACCC
* * * ****
35564239 TCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAATCGGACCGTTG
382 CCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCGAACAAAGG
*
35564304 GTTGTAGCAGCAGGATCGACAGCGGGATCGGAACCACGCAAAAAGGGGTCGGGCTGATCCCCGAC
447 GTTGTAG-AGCAGGAT------CGGGATCGGAACCACGCAAAAAGGGGCCGGGCTGATCCCCGAC
* * *
35564369 TTTCGCATTATGCCTCTCGGCCGGTTGAGCACCCGCACGCTTGTTTCATGGGTTGACTTAGGCAT
505 TTGCGCATTATGCCTCTCGACCGGCTGAGCACCCGCACGCTTGTTTCATGGGTTGACTTAGGCAT
** *
35564434 ACGAAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAACTGAACCAAG
570 ACGAAGTTCATCCCCAGTCTAAGCATACAAAGTTCATTCCCAGTCTAAGATCAAACAGAACCAAG
* * *
35564499 GTTTACGGCAGTAGGATCGATACCAC
635 GTTCACGGCAGTAGGATCGACACAAC
* * * * **
35564525 GCAGGGTGGACCGGGTCAATCCCC-GTCTTGCGTATCCTGCCTCTCTAGTTGGCTGAGCGCCCAC
1 -CAGGGGGGACCGGGCCAATCCCCAG-CTTGCGCATCCTGCCTCTCCAGCCGGCTGAGCGCCCAC
35564589 ACGC-CTGTTTCGTGGGTTGGCTTAGGCAT-GGGAGTTCATTCCATGTCTAAGCCCCAGCCGGAC
64 ACGCTC-GTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGAC
* *
35564652 CAAGGGTTGTGGCAGCGGGACCGACAGCACGTCGAGGGGGACCGGGCCAATCCTCGGCTTACGCA
128 CGAGGGTTGTGGCAGCGGGACCGACAGCACGTCGAGGGGGACCGGGCCAATCCTCGGCTTGCGCA
* ** * * *
35564717 TTATGCCTCTTCAGTCGGCTCAGTGCCCGCATGCTCATTTCATGAGTTGACTTAGGCATAGGGAG
193 TTATGCCTCTTCGGTCGGCTCAGCACCCGCACGCTCGTTTCATG-GTTGACTTAGGCATACGGAG
** * *
35564782 TTCATTCCCAGTCTAAGATATCGGA-TCGAGGGTTGCG-GTAGTAGGATCGACAGCACGCAATGG
257 TTCATTCCCAGTCTAAGATA-CGGACT-GAGGGTTGCGAACAGTAGGATCAACAGCACGCAA-GA
* * * * *
35564845 GGGATCG-GGCCGATCCCTGGCTTGCGCATTCTGCCTCTTCGACCGGCTGAGCGCCTGCACCCCC
319 GGGACCGCGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGACCGACTGAGCGCCTGCACCCCC
* *
35564909 GTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGAACAAAGGGT
384 GTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCGAACAAAGGGT
* * * * *
35564974 TGT-G-GCA-G-T-GGGAT-GGCAA-CACG-TAGAGGGGGACCGGG-TCGATCCCTGGCTTGCGC
449 TGTAGAGCAGGATCGGGATCGG-AACCACGCAAAAAGGGG-CCGGGCT-GATCCCCGACTTGCGC
* * * * * *
35565030 ATTCTGCCTTTCCGACCGGCTGAGCGCCCGCACGCTTGTTTCGTGGGTTGGCTTAGGCATACGGA
511 ATTATGCCTCT-CGACCGGCTGAGCACCCGCACGCTTGTTTCATGGGTTGACTTAGGCATACGAA
* ** * *
35565095 GTTCAT-TCCATGTCTAAGCATACAAAGTTCATTCCCAGTCTAAGATTGGATCAG-ACCGAGGGT
575 GTTCATCCCCA-GTCTAAGCATACAAAGTTCATTCCCAGTCTAAGA-TCAAACAGAACC-AAGGT
*
35565158 TGCAGCAATAGGACCAGTAGTAGGATCGACAGAAC
637 T-CA-C----GG--C---AGTAGGATCGACACAAC
* * * * **
35565193 TAGGGGGGACCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGTAC
1 CAGGGGGGACCGGGCCAATCCCCAGCTTGCGCATCCTGCCTCTCCAGCCGGCTGAGCGCCCACAC
* * * *
35565258 GCTCATTCCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACCGA
66 GCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGA
* * * **
35565323 GGGTTGTGGTAGCAGGAACGGCAGTGGGATCGACAGCATGTAGAGGGGGACCGGGCTGATCCTCG
131 GGGTTGT-G--GC----A--GC---GGGACCGACAGCACGTCGAGGGGGACCGGGCCAATCCTCG
*
35565388 GCTTGCGCATTATGCCTCTTCGGTCGGCTCAACACCCGCACGCTCGTTTCATTGGTT-AGCTTAG
184 GCTTGCGCATTATGCCTCTTCGGTCGGCTCAGCACCCGCACGCTCGTTTCA-TGGTTGA-CTTAG
*
35565452 GCGTACGGAGTTCATT-CCATGTCTAAGCATACGGA
247 GCATACGGAGTTCATTCCCA-GTCTAAG-ATACGGA
35565487 GTTCATTCCC
Statistics
Matches: 803, Mismatches: 112, Indels: 84
0.80 0.11 0.08
Matches are distributed among these distances:
654 7 0.01
655 35 0.04
656 95 0.12
657 9 0.01
658 1 0.00
659 1 0.00
663 3 0.00
664 1 0.00
665 4 0.00
667 75 0.09
668 186 0.23
669 22 0.03
670 4 0.00
671 86 0.11
672 149 0.19
673 1 0.00
675 1 0.00
677 2 0.00
679 4 0.00
680 112 0.14
681 5 0.01
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (660 bp):
CAGGGGGGACCGGGCCAATCCCCAGCTTGCGCATCCTGCCTCTCCAGCCGGCTGAGCGCCCACAC
GCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGA
GGGTTGTGGCAGCGGGACCGACAGCACGTCGAGGGGGACCGGGCCAATCCTCGGCTTGCGCATTA
TGCCTCTTCGGTCGGCTCAGCACCCGCACGCTCGTTTCATGGTTGACTTAGGCATACGGAGTTCA
TTCCCAGTCTAAGATACGGACTGAGGGTTGCGAACAGTAGGATCAACAGCACGCAAGAGGGACCG
CGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGACCGACTGAGCGCCTGCACCCCCGTTTCAT
GGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCGAACAAAGGGTTGTAGAG
CAGGATCGGGATCGGAACCACGCAAAAAGGGGCCGGGCTGATCCCCGACTTGCGCATTATGCCTC
TCGACCGGCTGAGCACCCGCACGCTTGTTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCCA
GTCTAAGCATACAAAGTTCATTCCCAGTCTAAGATCAAACAGAACCAAGGTTCACGGCAGTAGGA
TCGACACAAC
Found at i:35565486 original size:26 final size:26
Alignment explanation
Indices: 35565455--35565504 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
35565445 AGCTTAGGCG
35565455 TACGGAGTTCATT-CCATGTCTAAGCA
1 TACGGAGTTCATTCCCA-GTCTAAGCA
35565481 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
35565505 ATTTTGAGCC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCA
Found at i:35566211 original size:26 final size:26
Alignment explanation
Indices: 35566174--35566226 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
35566164 GTTGACTTAG
*
35566174 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
35566200 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
35566226 G
1 G
35566227 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:35566488 original size:159 final size:158
Alignment explanation
Indices: 35566200--35566634 Score: 574
Period size: 159 Copynumber: 2.7 Consensus size: 158
35566190 CCCAGTCTAA
** * * ** * *
35566200 GCATACGAAGTTCATTCCCA-GTCTAAG-ATCAGACCAGATCGAGGGTTGCGGCAGTAGGATCGA
1 GCATACGAAGTTCATT-CCATGTCTAAGCCCCAG-TCAGACCGAGGGTTGTAGCAGCAGGATCGG
* * * *
35566263 CAGCACGCAG-GGGGGACCGGGTCGATCCCCGGCTTGTGCATTCTACCTCTCCGGCCGACTGAGC
64 CAGCACGTAGAGGGGGACC-GGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCCGACTGAGC
*
35566327 ACCCGCACGCCCATTTCGTGGGTTGGCTTAG
128 ACCCGCACGCCCATTTCATGGGTTGGCTTAG
* *
35566358 GCATAGGGAA-TTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTTGTAGCAGC-GGGTCCGG
1 GCATA-CGAAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTTGTAGCAGCAGGAT-CGG
* *
35566421 TAGCACGTAGAGGGGGACCGGTTCGATCCCCGGCTTGCGCATTATGCCTCTCTGGCCGACTGAGC
64 CAGCACGTAGAGGGGGACCGG-TCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCCGACTGAGC
*
35566486 ACCCGCACGCTCATTTCATGGGTTGGCTTAG
128 ACCCGCACGCCCATTTCATGGGTTGGCTTAG
* *
35566517 GCATACGAAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCAGGATCGGCA
1 GCATACGAAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTTGTAGCAGCAGGATCGGCA
* *
35566582 GCACGTAGAGGGGGACCGGGCGGATCCCCGGCTTGCGCATTATGCCTTTCCGG
66 GCACGTAGAGGGGGACCGGTC-GATCCCCGGCTTGCGCATTATGCCTCTCCGG
35566635 TCGGCCTTTC
Statistics
Matches: 242, Mismatches: 26, Indels: 17
0.85 0.09 0.06
Matches are distributed among these distances:
157 6 0.02
158 51 0.21
159 182 0.75
160 3 0.01
ACGTcount: A:0.19, C:0.29, G:0.31, T:0.21
Consensus pattern (158 bp):
GCATACGAAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTTGTAGCAGCAGGATCGGCA
GCACGTAGAGGGGGACCGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCCGACTGAGCACC
CGCACGCCCATTTCATGGGTTGGCTTAG
Found at i:35566739 original size:26 final size:26
Alignment explanation
Indices: 35566689--35566741 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
35566679 GTTGAATTAG
* **
35566689 GCATACGGAGTTTATCCCCCGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
35566715 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
35566741 G
1 G
35566742 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:35567219 original size:26 final size:26
Alignment explanation
Indices: 35567188--35567240 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
35567178 GTTGGCTTAG
*
35567188 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
35567214 GCATACAGTGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
35567240 G
1 G
35567241 ATTTTGTGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:35567326 original size:11 final size:11
Alignment explanation
Indices: 35567310--35567350 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
35567300 CCCGGGGCAC
35567310 CATCACCGAAG
1 CATCACCGAAG
*
35567321 CATCACCGGAG
1 CATCACCGAAG
**
35567332 CATCGTCGAAG
1 CATCACCGAAG
35567343 CATCACCG
1 CATCACCG
35567351 GAGAGCCTAA
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.29, C:0.37, G:0.22, T:0.12
Consensus pattern (11 bp):
CATCACCGAAG
Found at i:35567335 original size:22 final size:22
Alignment explanation
Indices: 35567310--35567353 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
35567300 CCCGGGGCAC
35567310 CATCACCGAAGCATCACCGGAG
1 CATCACCGAAGCATCACCGGAG
**
35567332 CATCGTCGAAGCATCACCGGAG
1 CATCACCGAAGCATCACCGGAG
35567354 AGCCTAACCG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.30, C:0.34, G:0.25, T:0.11
Consensus pattern (22 bp):
CATCACCGAAGCATCACCGGAG
Found at i:35567970 original size:27 final size:26
Alignment explanation
Indices: 35567931--35567984 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 26
35567921 GTTGACTTAG
*
35567931 GCATACGGCGTTCA-TCCCTTAATCTAA
1 GCATACGGAGTTCATTCCC--AATCTAA
35567958 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
35567984 G
1 G
35567985 ATTGGATCTG
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
26 8 0.32
27 13 0.52
28 4 0.16
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:35568431 original size:26 final size:26
Alignment explanation
Indices: 35568401--35568454 Score: 92
Period size: 26 Copynumber: 2.1 Consensus size: 26
35568391 GTTGGCTTAG
35568401 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
35568427 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
35568453 GC
1 GC
35568455 TTGGATCGGA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 26 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:35568817 original size:26 final size:26
Alignment explanation
Indices: 35568781--35568833 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
35568771 GTTAACTTAG
35568781 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
35568807 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
35568833 G
1 G
35568834 ATCGAACTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Done.